BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4072
(191 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|242009361|ref|XP_002425456.1| LIM/homeobox protein Lhx9, putative [Pediculus humanus corporis]
gi|212509292|gb|EEB12718.1| LIM/homeobox protein Lhx9, putative [Pediculus humanus corporis]
Length = 433
Score = 232 bits (592), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 126/185 (68%), Positives = 137/185 (74%), Gaps = 29/185 (15%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
KRRLSLCVGCG QIHDQYILRVAPDLEWHAACL+CAECHQFLD
Sbjct: 5 KRRLSLCVGCGAQIHDQYILRVAPDLEWHAACLKCAECHQFLD----------------- 47
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
ENCTCFVRDGKTYCKRDYVRLFGTKC+KC +F + DFVMRAK KIYHV
Sbjct: 48 -----------ENCTCFVRDGKTYCKRDYVRLFGTKCDKCGQSFSKNDFVMRAKTKIYHV 96
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGE-NNNNNTNINNNLHNLNNE 179
CF C C +QLVPGDEFALREDGLFCK+DHE +DKS GE NNNN NNN ++++NE
Sbjct: 97 DCFRCTACERQLVPGDEFALREDGLFCKEDHEVLDKSCTGEHNNNNTNVNNNNSNSVHNE 156
Query: 180 GSNSG 184
GSNSG
Sbjct: 157 GSNSG 161
>gi|156398319|ref|XP_001638136.1| predicted protein [Nematostella vectensis]
gi|156225254|gb|EDO46073.1| predicted protein [Nematostella vectensis]
Length = 329
Score = 223 bits (568), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 106/183 (57%), Positives = 126/183 (68%), Gaps = 31/183 (16%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
KRR+S+CVGCG QIHDQYILRVAPDLEWHA+CL+CA+CH +LDE C
Sbjct: 11 KRRVSMCVGCGSQIHDQYILRVAPDLEWHASCLKCADCHMYLDEKC-------------- 56
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
TCFVR+GKTYCKRDYVRLFGTKC KC+LNF + DFVMRA+NKIYH+
Sbjct: 57 --------------TCFVREGKTYCKRDYVRLFGTKCAKCSLNFSKNDFVMRARNKIYHI 102
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNNTNINNNLHNLNNEG 180
CF CV C +QLVPGDEFALREDGLFCK DHE ++K++ T++ NN + G
Sbjct: 103 DCFRCVACSRQLVPGDEFALREDGLFCKADHEIVEKAT---ATAQATHVRNNGQRSSQSG 159
Query: 181 SNS 183
+
Sbjct: 160 GQT 162
>gi|308097158|gb|ADO14133.1| ISL1 transcription factor [Notophthalmus viridescens]
Length = 349
Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 97/160 (60%), Positives = 118/160 (73%), Gaps = 28/160 (17%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
KR +SLCVGCG QIHDQYILRV+PDLEWHAACL+CAEC
Sbjct: 11 KRLISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAEC---------------------- 48
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
NQ+LDE CTCFVRDGKTYCKRDY+RL+G KC KCN+ F + DFVMRA++K+YH+
Sbjct: 49 ------NQYLDETCTCFVRDGKTYCKRDYIRLYGIKCAKCNIGFSKNDFVMRARSKVYHI 102
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNG 160
+CF CV C +QL+PGDEFALREDGLFC+ DH+ ++++S G
Sbjct: 103 ECFSCVACSRQLIPGDEFALREDGLFCRADHDVVERASLG 142
>gi|327262855|ref|XP_003216239.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Anolis
carolinensis]
Length = 349
Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 97/163 (59%), Positives = 119/163 (73%), Gaps = 28/163 (17%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
KR +SLCVGCG QIHDQYILRV+PDLEWHAACL+CAEC
Sbjct: 11 KRLISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAEC---------------------- 48
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
NQ+LDE CTCFVRDGKTYCKRDY+RL+G KC KCN+ F + DFVMRA++K+YH+
Sbjct: 49 ------NQYLDETCTCFVRDGKTYCKRDYIRLYGIKCAKCNIGFSKNDFVMRARSKVYHI 102
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENN 163
+CF CV C +QL+PGDEFALREDGLFC+ DH+ ++++S G +
Sbjct: 103 ECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGPGD 145
>gi|209737368|gb|ACI69553.1| Insulin gene enhancer protein isl-1 [Salmo salar]
Length = 356
Score = 216 bits (551), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 97/163 (59%), Positives = 120/163 (73%), Gaps = 28/163 (17%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
KR +SLCVGCG QIHDQYILRV+PDLEWHAACL+CAEC
Sbjct: 11 KRLISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAEC---------------------- 48
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
NQ+LDE+CTCFVRDGKTYCKRDYVRL+G KC KCN+ F + DFVMRA++K+YH+
Sbjct: 49 ------NQYLDESCTCFVRDGKTYCKRDYVRLYGIKCAKCNIGFSKNDFVMRARSKVYHI 102
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENN 163
+CF CV C +QL+PGDEFALREDGLFC+ DH+ +++++ G +
Sbjct: 103 ECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERATMGSGD 145
>gi|18858905|ref|NP_571037.1| insulin gene enhancer protein isl-1 [Danio rerio]
gi|1708559|sp|P53405.1|ISL1_DANRE RecName: Full=Insulin gene enhancer protein isl-1; Short=Islet-1
gi|497898|dbj|BAA04670.1| insulin gene enhancer binding protein [Danio rerio]
gi|38173895|gb|AAH60892.1| Isl1 protein [Danio rerio]
Length = 349
Score = 216 bits (550), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 96/163 (58%), Positives = 120/163 (73%), Gaps = 28/163 (17%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
KR +SLCVGCG QIHDQYILRV+PDLEWHAACL+CAEC
Sbjct: 11 KRLISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAEC---------------------- 48
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
NQ+LDE+CTCFVRDGKTYCKRDY+RL+G KC KCN+ F + DFVMRA++K+YH+
Sbjct: 49 ------NQYLDESCTCFVRDGKTYCKRDYIRLYGIKCAKCNIGFSKNDFVMRARSKVYHI 102
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENN 163
+CF CV C +QL+PGDEFALREDGLFC+ DH+ +++++ G +
Sbjct: 103 ECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERATMGAGD 145
>gi|443690540|gb|ELT92649.1| hypothetical protein CAPTEDRAFT_219057 [Capitella teleta]
Length = 432
Score = 216 bits (549), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 102/189 (53%), Positives = 131/189 (69%), Gaps = 28/189 (14%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
+RR+S+CVGCG QI DQYILRVAPDLEWHA+CLRC +C
Sbjct: 11 RRRISMCVGCGSQITDQYILRVAPDLEWHASCLRCTDC---------------------- 48
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
NQ+LDE+CTCFVRDGKTYCKRDYVRLFGTKC +C+ +F + DFVMRAKNKIYH+
Sbjct: 49 ------NQYLDESCTCFVRDGKTYCKRDYVRLFGTKCARCSQSFSKNDFVMRAKNKIYHI 102
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNNTNINNNLHNLNNEG 180
CF C+ C +QL+PGDEFALR+DGLFCK DH+ ++ +S G + + ++ LNN
Sbjct: 103 DCFRCIACSRQLIPGDEFALRDDGLFCKADHDVVESASTGSITPSPAQDDAKMNILNNNN 162
Query: 181 SNSGKIQLY 189
+N+ ++L+
Sbjct: 163 NNNKDLKLH 171
>gi|6980082|gb|AAF34717.1|AF226616_1 LIM-homeodomain transcription factor islet [Branchiostoma floridae]
Length = 419
Score = 216 bits (549), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 101/184 (54%), Positives = 125/184 (67%), Gaps = 28/184 (15%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
RR ++CVGCG IHDQYILRVAPDLEWHAACL+C++C
Sbjct: 10 RRNAMCVGCGSHIHDQYILRVAPDLEWHAACLKCSDC----------------------- 46
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
NQ+LDE CTCFVR+GKTYCKR YVRLFGTKC KC+L F + DFVMRAKNKIYH+
Sbjct: 47 -----NQYLDETCTCFVREGKTYCKRCYVRLFGTKCAKCSLGFTKNDFVMRAKNKIYHID 101
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNNTNINNNLHNLNNEGS 181
CF CV C +QL+PGDEFALREDGLFCK DHE ++++SN ++N ++ + +
Sbjct: 102 CFRCVACSRQLIPGDEFALREDGLFCKADHEVLERASNNVDSNGRASLGSTDLEMATRPE 161
Query: 182 NSGK 185
+ G+
Sbjct: 162 SHGR 165
>gi|431908581|gb|ELK12174.1| Insulin protein enhancer protein ISL-1 [Pteropus alecto]
Length = 383
Score = 215 bits (548), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 96/163 (58%), Positives = 120/163 (73%), Gaps = 28/163 (17%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
KR +SLCVGCG QIHDQYILRV+PDLEWHAACL+CAEC
Sbjct: 45 KRLISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAEC---------------------- 82
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
NQ+LDE+CTCFVRDGKTYCKRDY+RL+G KC KC++ F + DFVMRA++K+YH+
Sbjct: 83 ------NQYLDESCTCFVRDGKTYCKRDYIRLYGIKCAKCSIGFSKNDFVMRARSKVYHI 136
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENN 163
+CF CV C +QL+PGDEFALREDGLFC+ DH+ ++++S G +
Sbjct: 137 ECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGAGD 179
>gi|345304657|ref|XP_001508080.2| PREDICTED: insulin gene enhancer protein ISL-1-like
[Ornithorhynchus anatinus]
Length = 382
Score = 215 bits (548), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 96/163 (58%), Positives = 119/163 (73%), Gaps = 28/163 (17%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
KR +SLCVGCG QIHDQYILRV+PDLEWHAACL+CAEC
Sbjct: 44 KRLISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAEC---------------------- 81
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
NQ+LDE CTCFVRDGKTYCKRDY+RL+G KC KC++ F + DFVMRA++K+YH+
Sbjct: 82 ------NQYLDETCTCFVRDGKTYCKRDYIRLYGIKCAKCSIGFSKNDFVMRARSKVYHI 135
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENN 163
+CF CV C +QL+PGDEFALREDGLFC+ DH+ ++++S G +
Sbjct: 136 ECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGAGD 178
>gi|533419|gb|AAA81946.1| ISL-1 [Homo sapiens]
Length = 346
Score = 215 bits (548), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 96/163 (58%), Positives = 120/163 (73%), Gaps = 28/163 (17%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
KR +SLCVGCG QIHDQYILRV+PDLEWHAACL+CAEC
Sbjct: 8 KRLISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAEC---------------------- 45
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
NQ+LDE+CTCFVRDGKTYCKRDY+RL+G KC KC++ F + DFVMRA++K+YH+
Sbjct: 46 ------NQYLDESCTCFVRDGKTYCKRDYIRLYGIKCAKCSIGFSKNDFVMRARSKVYHI 99
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENN 163
+CF CV C +QL+PGDEFALREDGLFC+ DH+ ++++S G +
Sbjct: 100 ECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGAGD 142
>gi|440908077|gb|ELR58138.1| Insulin enhancer protein ISL-1, partial [Bos grunniens mutus]
Length = 359
Score = 215 bits (548), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 96/163 (58%), Positives = 120/163 (73%), Gaps = 28/163 (17%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
KR +SLCVGCG QIHDQYILRV+PDLEWHAACL+CAEC
Sbjct: 21 KRLISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAEC---------------------- 58
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
NQ+LDE+CTCFVRDGKTYCKRDY+RL+G KC KC++ F + DFVMRA++K+YH+
Sbjct: 59 ------NQYLDESCTCFVRDGKTYCKRDYIRLYGIKCAKCSIGFSKNDFVMRARSKVYHI 112
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENN 163
+CF CV C +QL+PGDEFALREDGLFC+ DH+ ++++S G +
Sbjct: 113 ECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGAGD 155
>gi|395510266|ref|XP_003759400.1| PREDICTED: insulin gene enhancer protein ISL-1 isoform 2
[Sarcophilus harrisii]
Length = 354
Score = 215 bits (548), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 96/163 (58%), Positives = 119/163 (73%), Gaps = 28/163 (17%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
KR +SLCVGCG QIHDQYILRV+PDLEWHAACL+CAEC
Sbjct: 11 KRLISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAEC---------------------- 48
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
NQ+LDE CTCFVRDGKTYCKRDY+RL+G KC KC++ F + DFVMRA++K+YH+
Sbjct: 49 ------NQYLDETCTCFVRDGKTYCKRDYIRLYGIKCAKCSIGFSKNDFVMRARSKVYHI 102
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENN 163
+CF CV C +QL+PGDEFALREDGLFC+ DH+ ++++S G +
Sbjct: 103 ECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGAGD 145
>gi|281342386|gb|EFB17970.1| hypothetical protein PANDA_008333 [Ailuropoda melanoleuca]
Length = 340
Score = 215 bits (548), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 96/163 (58%), Positives = 120/163 (73%), Gaps = 28/163 (17%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
KR +SLCVGCG QIHDQYILRV+PDLEWHAACL+CAEC
Sbjct: 2 KRLISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAEC---------------------- 39
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
NQ+LDE+CTCFVRDGKTYCKRDY+RL+G KC KC++ F + DFVMRA++K+YH+
Sbjct: 40 ------NQYLDESCTCFVRDGKTYCKRDYIRLYGIKCAKCSIGFSKNDFVMRARSKVYHI 93
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENN 163
+CF CV C +QL+PGDEFALREDGLFC+ DH+ ++++S G +
Sbjct: 94 ECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGTGD 136
>gi|426246540|ref|XP_004017051.1| PREDICTED: insulin gene enhancer protein ISL-1 [Ovis aries]
Length = 349
Score = 215 bits (548), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 96/163 (58%), Positives = 120/163 (73%), Gaps = 28/163 (17%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
KR +SLCVGCG QIHDQYILRV+PDLEWHAACL+CAEC
Sbjct: 11 KRLISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAEC---------------------- 48
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
NQ+LDE+CTCFVRDGKTYCKRDY+RL+G KC KC++ F + DFVMRA++K+YH+
Sbjct: 49 ------NQYLDESCTCFVRDGKTYCKRDYIRLYGIKCAKCSIGFSKNDFVMRARSKVYHI 102
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENN 163
+CF CV C +QL+PGDEFALREDGLFC+ DH+ ++++S G +
Sbjct: 103 ECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGAGD 145
>gi|94400881|ref|NP_059035.3| insulin gene enhancer protein ISL-1 [Rattus norvegicus]
gi|115387114|ref|NP_002193.2| insulin gene enhancer protein ISL-1 [Homo sapiens]
gi|149642655|ref|NP_001092600.1| insulin gene enhancer protein ISL-1 [Bos taurus]
gi|162287065|ref|NP_067434.3| insulin gene enhancer protein ISL-1 [Mus musculus]
gi|291395329|ref|XP_002714072.1| PREDICTED: islet-1 [Oryctolagus cuniculus]
gi|311273676|ref|XP_003133982.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Sus scrofa]
gi|332254884|ref|XP_003276562.1| PREDICTED: insulin gene enhancer protein ISL-1 [Nomascus
leucogenys]
gi|332821395|ref|XP_001150633.2| PREDICTED: insulin gene enhancer protein ISL-1 isoform 2 [Pan
troglodytes]
gi|344272509|ref|XP_003408074.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Loxodonta
africana]
gi|345799577|ref|XP_853721.2| PREDICTED: insulin gene enhancer protein ISL-1 isoform 1 [Canis
lupus familiaris]
gi|348568904|ref|XP_003470238.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Cavia
porcellus]
gi|354472426|ref|XP_003498440.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Cricetulus
griseus]
gi|395818859|ref|XP_003782831.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Otolemur
garnettii]
gi|397514229|ref|XP_003827396.1| PREDICTED: insulin gene enhancer protein ISL-1 [Pan paniscus]
gi|402871509|ref|XP_003899703.1| PREDICTED: insulin gene enhancer protein ISL-1 [Papio anubis]
gi|403267625|ref|XP_003925922.1| PREDICTED: insulin gene enhancer protein ISL-1 [Saimiri boliviensis
boliviensis]
gi|410949527|ref|XP_003981473.1| PREDICTED: insulin gene enhancer protein ISL-1 [Felis catus]
gi|47606422|sp|P61374.1|ISL1_RAT RecName: Full=Insulin gene enhancer protein ISL-1; Short=Islet-1
gi|47606423|sp|P61371.1|ISL1_HUMAN RecName: Full=Insulin gene enhancer protein ISL-1; Short=Islet-1
gi|47606424|sp|P61372.1|ISL1_MOUSE RecName: Full=Insulin gene enhancer protein ISL-1; Short=Islet-1
gi|47606425|sp|P61373.1|ISL1_MESAU RecName: Full=Insulin gene enhancer protein ISL-1; Short=Islet-1
gi|2137056|pir||I67418 transcription factor isl-1 - hamster
gi|4261764|gb|AAD14064.1|S70721_1 homeobox [Homo sapiens]
gi|545787|gb|AAB30128.1| homeobox [Rattus sp.]
gi|4469284|emb|CAB38446.1| Lim-homeodomain protein Islet1 [Mus musculus]
gi|22658390|gb|AAH31213.1| ISL LIM homeobox 1 [Homo sapiens]
gi|30065750|gb|AAP20776.1| Isl-1 [Cricetulus sp.]
gi|119575256|gb|EAW54861.1| ISL1 transcription factor, LIM/homeodomain, (islet-1) [Homo
sapiens]
gi|123996141|gb|ABM85672.1| ISL1 transcription factor, LIM/homeodomain, (islet-1) [synthetic
construct]
gi|124298178|gb|AAI32264.1| ISL1 transcription factor, LIM/homeodomain [Mus musculus]
gi|124375804|gb|AAI32610.1| ISL1 transcription factor, LIM/homeodomain [Mus musculus]
gi|148686421|gb|EDL18368.1| ISL1 transcription factor, LIM/homeodomain, isoform CRA_b [Mus
musculus]
gi|148877422|gb|AAI46164.1| ISL1 protein [Bos taurus]
gi|149059388|gb|EDM10395.1| ISL1 transcription factor, LIM/homeodomain 1 [Rattus norvegicus]
gi|157928248|gb|ABW03420.1| ISL LIM homeobox 1 [synthetic construct]
gi|261861196|dbj|BAI47120.1| ISL LIM homeobox 1 [synthetic construct]
gi|296475787|tpg|DAA17902.1| TPA: islet-1 [Bos taurus]
gi|351712707|gb|EHB15626.1| Insulin gene enhancer protein ISL-1 [Heterocephalus glaber]
gi|355691298|gb|EHH26483.1| Insulin gene enhancer protein ISL-1 [Macaca mulatta]
gi|226841|prf||1608207A insulin gene enhancer binding protein Isl-1
Length = 349
Score = 215 bits (548), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 96/163 (58%), Positives = 120/163 (73%), Gaps = 28/163 (17%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
KR +SLCVGCG QIHDQYILRV+PDLEWHAACL+CAEC
Sbjct: 11 KRLISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAEC---------------------- 48
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
NQ+LDE+CTCFVRDGKTYCKRDY+RL+G KC KC++ F + DFVMRA++K+YH+
Sbjct: 49 ------NQYLDESCTCFVRDGKTYCKRDYIRLYGIKCAKCSIGFSKNDFVMRARSKVYHI 102
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENN 163
+CF CV C +QL+PGDEFALREDGLFC+ DH+ ++++S G +
Sbjct: 103 ECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGAGD 145
>gi|301768533|ref|XP_002919684.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Ailuropoda
melanoleuca]
Length = 349
Score = 215 bits (547), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 96/163 (58%), Positives = 120/163 (73%), Gaps = 28/163 (17%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
KR +SLCVGCG QIHDQYILRV+PDLEWHAACL+CAEC
Sbjct: 11 KRLISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAEC---------------------- 48
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
NQ+LDE+CTCFVRDGKTYCKRDY+RL+G KC KC++ F + DFVMRA++K+YH+
Sbjct: 49 ------NQYLDESCTCFVRDGKTYCKRDYIRLYGIKCAKCSIGFSKNDFVMRARSKVYHI 102
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENN 163
+CF CV C +QL+PGDEFALREDGLFC+ DH+ ++++S G +
Sbjct: 103 ECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGTGD 145
>gi|260829945|ref|XP_002609922.1| LIM class homeodomain transcription factor, islet subclass
[Branchiostoma floridae]
gi|229295284|gb|EEN65932.1| LIM class homeodomain transcription factor, islet subclass
[Branchiostoma floridae]
Length = 430
Score = 215 bits (547), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 100/184 (54%), Positives = 125/184 (67%), Gaps = 28/184 (15%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
RR ++CVGCG IHDQYILRVAPDLEWHAACL+C++C
Sbjct: 21 RRNAMCVGCGSHIHDQYILRVAPDLEWHAACLKCSDC----------------------- 57
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
NQ+LDE CTCFVR+GKTYCKR YVRLFGTKC KC+L F + DFVMRA+NKIYH+
Sbjct: 58 -----NQYLDETCTCFVREGKTYCKRCYVRLFGTKCAKCSLGFTKNDFVMRARNKIYHID 112
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNNTNINNNLHNLNNEGS 181
CF CV C +QL+PGDEFALREDGLFCK DHE ++++SN ++N ++ + +
Sbjct: 113 CFRCVACSRQLIPGDEFALREDGLFCKADHEVLERASNNVDSNGRASLGSTDLEMATRPE 172
Query: 182 NSGK 185
+ G+
Sbjct: 173 SHGR 176
>gi|126315044|ref|XP_001365199.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Monodelphis
domestica]
gi|395510264|ref|XP_003759399.1| PREDICTED: insulin gene enhancer protein ISL-1 isoform 1
[Sarcophilus harrisii]
Length = 349
Score = 215 bits (547), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 96/163 (58%), Positives = 119/163 (73%), Gaps = 28/163 (17%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
KR +SLCVGCG QIHDQYILRV+PDLEWHAACL+CAEC
Sbjct: 11 KRLISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAEC---------------------- 48
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
NQ+LDE CTCFVRDGKTYCKRDY+RL+G KC KC++ F + DFVMRA++K+YH+
Sbjct: 49 ------NQYLDETCTCFVRDGKTYCKRDYIRLYGIKCAKCSIGFSKNDFVMRARSKVYHI 102
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENN 163
+CF CV C +QL+PGDEFALREDGLFC+ DH+ ++++S G +
Sbjct: 103 ECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGAGD 145
>gi|355749907|gb|EHH54245.1| Insulin gene enhancer protein ISL-1 [Macaca fascicularis]
Length = 349
Score = 214 bits (546), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 96/163 (58%), Positives = 120/163 (73%), Gaps = 28/163 (17%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
KR +SLCVGCG QIHDQYILRV+PDLEWHAACL+CAEC
Sbjct: 11 KRLISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAEC---------------------- 48
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
NQ+LDE+CTCFVRDGKTYCKRDY+RL+G KC KC++ F + DFVMRA++K+YH+
Sbjct: 49 ------NQYLDESCTCFVRDGKTYCKRDYIRLYGIKCAKCSIGFSKNDFVMRARSKVYHI 102
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENN 163
+CF CV C +QL+PGDEFALREDGLFC+ DH+ ++++S G +
Sbjct: 103 ECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGAGD 145
>gi|28569978|dbj|BAC57891.1| transcription factor islet-1 isoform beta [Mus musculus]
gi|148686420|gb|EDL18367.1| ISL1 transcription factor, LIM/homeodomain, isoform CRA_a [Mus
musculus]
Length = 326
Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 96/163 (58%), Positives = 120/163 (73%), Gaps = 28/163 (17%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
KR +SLCVGCG QIHDQYILRV+PDLEWHAACL+CAEC
Sbjct: 11 KRLISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAEC---------------------- 48
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
NQ+LDE+CTCFVRDGKTYCKRDY+RL+G KC KC++ F + DFVMRA++K+YH+
Sbjct: 49 ------NQYLDESCTCFVRDGKTYCKRDYIRLYGIKCAKCSIGFSKNDFVMRARSKVYHI 102
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENN 163
+CF CV C +QL+PGDEFALREDGLFC+ DH+ ++++S G +
Sbjct: 103 ECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGAGD 145
>gi|426384765|ref|XP_004058922.1| PREDICTED: insulin gene enhancer protein ISL-1 [Gorilla gorilla
gorilla]
Length = 393
Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 96/163 (58%), Positives = 120/163 (73%), Gaps = 28/163 (17%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
KR +SLCVGCG QIHDQYILRV+PDLEWHAACL+CAEC
Sbjct: 11 KRLISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAEC---------------------- 48
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
NQ+LDE+CTCFVRDGKTYCKRDY+RL+G KC KC++ F + DFVMRA++K+YH+
Sbjct: 49 ------NQYLDESCTCFVRDGKTYCKRDYIRLYGIKCAKCSIGFSKNDFVMRARSKVYHI 102
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENN 163
+CF CV C +QL+PGDEFALREDGLFC+ DH+ ++++S G +
Sbjct: 103 ECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGAGD 145
>gi|348539204|ref|XP_003457079.1| PREDICTED: insulin gene enhancer protein isl-1-like isoform 1
[Oreochromis niloticus]
Length = 349
Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 96/163 (58%), Positives = 120/163 (73%), Gaps = 28/163 (17%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
KR +SLCVGCG QIHDQYILRV+PDLEWHAACL+CAEC
Sbjct: 11 KRLVSLCVGCGNQIHDQYILRVSPDLEWHAACLKCAEC---------------------- 48
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
+Q+LDE+CTCFVRDGKTYCKRDY+RL+G KC KCN+ F + DFVMRA++K+YH+
Sbjct: 49 ------SQYLDESCTCFVRDGKTYCKRDYIRLYGIKCAKCNIGFSKNDFVMRARSKVYHI 102
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENN 163
+CF CV C +QL+PGDEFALREDGLFC+ DH+ ++++S G +
Sbjct: 103 ECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGPGD 145
>gi|158299279|ref|XP_319393.4| AGAP010209-PA [Anopheles gambiae str. PEST]
gi|157014289|gb|EAA13793.5| AGAP010209-PA [Anopheles gambiae str. PEST]
Length = 451
Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 115/205 (56%), Positives = 135/205 (65%), Gaps = 49/205 (23%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K RLSLCVGCGGQIHDQYILRVAPDLEWHAACL+C EC
Sbjct: 50 KERLSLCVGCGGQIHDQYILRVAPDLEWHAACLKCQEC---------------------- 87
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
QFLDE+CTCFVRDGKTYCKRDYVRLFGTKC+KC +F + DFVMRAK KIYH+
Sbjct: 88 ------RQFLDESCTCFVRDGKTYCKRDYVRLFGTKCDKCGSSFSKNDFVMRAKTKIYHI 141
Query: 121 QCFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGMDKSS-NG------------ENNNNN 166
+CF C C +QL+PGDEFALR+ G L+CK+DH+ ++KSS NG + NN +
Sbjct: 142 ECFRCSACARQLIPGDEFALRDGGSLYCKEDHDHLEKSSQNGLVQGAGKQERRIQKNNKH 201
Query: 167 TN------INNNLHNLN-NEGSNSG 184
TN N N+ ++N N GS SG
Sbjct: 202 TNKRQSSPSNANVVHVNQNSGSESG 226
>gi|390339027|ref|XP_781774.3| PREDICTED: insulin gene enhancer protein ISL-1-like
[Strongylocentrotus purpuratus]
Length = 402
Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 106/192 (55%), Positives = 126/192 (65%), Gaps = 31/192 (16%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
KRR SLCVGCGG I DQYILRVAPDLEWHAACL+CA+C CT
Sbjct: 45 KRRASLCVGCGGSIQDQYILRVAPDLEWHAACLKCADC-------CT------------- 84
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
+LDE CTCFVRDGK YCKRDY+RLFGTKC KC+ F + DFVMRA+NKIYH+
Sbjct: 85 --------YLDETCTCFVRDGKPYCKRDYLRLFGTKCAKCSQGFTKNDFVMRARNKIYHI 136
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGE---NNNNNTNINNNLHNLN 177
CF CV C +QL+PGDEFALREDGLFCK DHE M++ + + N N+ IN
Sbjct: 137 DCFRCVACSRQLIPGDEFALREDGLFCKADHEVMERPGDRDQVPNVNHRNYINATRAEPM 196
Query: 178 NEGSNSGKIQLY 189
++SG+ ++
Sbjct: 197 PNRTSSGRSHVH 208
>gi|45382271|ref|NP_990745.1| insulin gene enhancer protein ISL-1 [Gallus gallus]
gi|1708560|sp|P50211.1|ISL1_CHICK RecName: Full=Insulin gene enhancer protein ISL-1; Short=Islet-1
gi|531179|gb|AAA62171.1| amino acid feature: LIM1, bp 331 .. 483; amino acid feature: LIM2,
bp 517 .. 669; amino acid feature: homeodomain, bp 820
.. 999 [Gallus gallus]
Length = 349
Score = 214 bits (545), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 96/163 (58%), Positives = 118/163 (72%), Gaps = 28/163 (17%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
KR +SLCVGCG QIHDQYILRV+PDLEWHAACL+CAEC
Sbjct: 11 KRLISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAEC---------------------- 48
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
NQ+LDE CTCFVRDGKTYCKRDY+RL+G KC KC++ F + DFVMRA+ K+YH+
Sbjct: 49 ------NQYLDETCTCFVRDGKTYCKRDYIRLYGIKCAKCSIGFSKNDFVMRARAKVYHI 102
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENN 163
+CF CV C +QL+PGDEFALREDGLFC+ DH+ ++++S G +
Sbjct: 103 ECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGAGD 145
>gi|160420135|ref|NP_001104188.1| ISL LIM homeobox 1 [Xenopus laevis]
gi|115528275|gb|AAI24895.1| LOC100126604 protein [Xenopus laevis]
gi|144952770|gb|ABP04039.1| islet-1 [Xenopus laevis]
gi|213626865|gb|AAI70282.1| Islet-1 [Xenopus laevis]
Length = 354
Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 96/163 (58%), Positives = 121/163 (74%), Gaps = 28/163 (17%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
KR +SLCVGCG QIHDQYILRV+PDLEWHAACL+CAEC
Sbjct: 11 KRLISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAEC---------------------- 48
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
+Q+LDE+CTCFVRDGKTYCKRDY+RL+G KC KCN+ F + DFVMRA++K+YH+
Sbjct: 49 ------SQYLDESCTCFVRDGKTYCKRDYIRLYGIKCAKCNIGFSKNDFVMRARSKVYHI 102
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENN 163
+CF CV C +QL+PGDEFALREDGLFC+ DH+ ++++S G ++
Sbjct: 103 ECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGGSD 145
>gi|348539206|ref|XP_003457080.1| PREDICTED: insulin gene enhancer protein isl-1-like isoform 2
[Oreochromis niloticus]
Length = 357
Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 96/163 (58%), Positives = 120/163 (73%), Gaps = 28/163 (17%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
KR +SLCVGCG QIHDQYILRV+PDLEWHAACL+CAEC
Sbjct: 11 KRLVSLCVGCGNQIHDQYILRVSPDLEWHAACLKCAEC---------------------- 48
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
+Q+LDE+CTCFVRDGKTYCKRDY+RL+G KC KCN+ F + DFVMRA++K+YH+
Sbjct: 49 ------SQYLDESCTCFVRDGKTYCKRDYIRLYGIKCAKCNIGFSKNDFVMRARSKVYHI 102
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENN 163
+CF CV C +QL+PGDEFALREDGLFC+ DH+ ++++S G +
Sbjct: 103 ECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGPGD 145
>gi|224090443|ref|XP_002197098.1| PREDICTED: insulin gene enhancer protein ISL-1 [Taeniopygia
guttata]
Length = 349
Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 96/160 (60%), Positives = 117/160 (73%), Gaps = 28/160 (17%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
KR +SLCVGCG QIHDQYILRV+PDLEWHAACL+CAEC
Sbjct: 11 KRLISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAEC---------------------- 48
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
NQ+LDE CTCFVRDGKTYCKRDY+RL+G KC KC++ F + DFVMRA+ K+YH+
Sbjct: 49 ------NQYLDETCTCFVRDGKTYCKRDYIRLYGIKCAKCSIGFSKNDFVMRARAKVYHI 102
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNG 160
+CF CV C +QL+PGDEFALREDGLFC+ DH+ ++++S G
Sbjct: 103 ECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLG 142
>gi|194223906|ref|XP_001916580.1| PREDICTED: insulin gene enhancer protein ISL-1 [Equus caballus]
Length = 349
Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 95/163 (58%), Positives = 120/163 (73%), Gaps = 28/163 (17%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
KR +SLCVGCG QIHDQYILRV+PDLEWHAACL+CAEC
Sbjct: 11 KRLISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAEC---------------------- 48
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
NQ+LDE+CTCFVRDGKTYCKRDY+RL+G KC KC++ F + DFVMRA++K+YH+
Sbjct: 49 ------NQYLDESCTCFVRDGKTYCKRDYIRLYGIKCAKCSIGFSKNDFVMRARSKVYHI 102
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENN 163
+CF CV C +QL+PGDEFALREDGLFC+ +H+ ++++S G +
Sbjct: 103 ECFRCVACSRQLIPGDEFALREDGLFCRAEHDVVERASLGAGD 145
>gi|57613|emb|CAA37349.1| insulin gene enhancer binding protein [Rattus rattus]
Length = 313
Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 96/163 (58%), Positives = 120/163 (73%), Gaps = 28/163 (17%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
KR +SLCVGCG QIHDQYILRV+PDLEWHAACL+CAEC
Sbjct: 8 KRLISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAEC---------------------- 45
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
NQ+LDE+CTCFVRDGKTYCKRDY+RL+G KC KC++ F + DFVMRA++K+YH+
Sbjct: 46 ------NQYLDESCTCFVRDGKTYCKRDYIRLYGIKCAKCSIGFSKNDFVMRARSKVYHI 99
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENN 163
+CF CV C +QL+PGDEFALREDGLFC+ DH+ ++++S G +
Sbjct: 100 ECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGAGD 142
>gi|26355418|dbj|BAC41153.1| unnamed protein product [Mus musculus]
Length = 349
Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 95/163 (58%), Positives = 119/163 (73%), Gaps = 28/163 (17%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
KR +SLCVGCG QIHDQYILRV+PDLEWHAACL+CAEC
Sbjct: 11 KRLISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAEC---------------------- 48
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
NQ+LDE+CTC VRDGKTYCKRDY+RL+G KC KC++ F + DFVMRA++K+YH+
Sbjct: 49 ------NQYLDESCTCLVRDGKTYCKRDYIRLYGIKCAKCSIGFSKNDFVMRARSKVYHI 102
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENN 163
+CF CV C +QL+PGDEFALREDGLFC+ DH+ ++++S G +
Sbjct: 103 ECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGAGD 145
>gi|183985542|gb|AAI66037.1| isl1 protein [Xenopus (Silurana) tropicalis]
Length = 335
Score = 213 bits (543), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 96/163 (58%), Positives = 120/163 (73%), Gaps = 28/163 (17%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
KR +SLCVGCG QIHDQYILRV+PDLEWHAACL+CAEC
Sbjct: 11 KRLISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAEC---------------------- 48
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
+Q+LDE CTCFVRDGKTYCKRDY+RL+G KC KCN+ F + DFVMRA++K+YH+
Sbjct: 49 ------SQYLDETCTCFVRDGKTYCKRDYIRLYGIKCAKCNIGFSKNDFVMRARSKVYHI 102
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENN 163
+CF CV C +QL+PGDEFALREDGLFC+ DH+ ++++S G ++
Sbjct: 103 ECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGASD 145
>gi|123981310|gb|ABM82484.1| ISL1 transcription factor, LIM/homeodomain, (islet-1) [synthetic
construct]
Length = 349
Score = 213 bits (543), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 95/163 (58%), Positives = 120/163 (73%), Gaps = 28/163 (17%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
KR +SLCVGCG QIHD+YILRV+PDLEWHAACL+CAEC
Sbjct: 11 KRLISLCVGCGNQIHDRYILRVSPDLEWHAACLKCAEC---------------------- 48
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
NQ+LDE+CTCFVRDGKTYCKRDY+RL+G KC KC++ F + DFVMRA++K+YH+
Sbjct: 49 ------NQYLDESCTCFVRDGKTYCKRDYIRLYGIKCAKCSIGFSKNDFVMRARSKVYHI 102
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENN 163
+CF CV C +QL+PGDEFALREDGLFC+ DH+ ++++S G +
Sbjct: 103 ECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGAGD 145
>gi|50253600|gb|AAT72002.1| isl1, partial [Xenopus (Silurana) tropicalis]
Length = 268
Score = 213 bits (542), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 96/163 (58%), Positives = 120/163 (73%), Gaps = 28/163 (17%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
KR +SLCVGCG QIHDQYILRV+PDLEWHAACL+CAEC
Sbjct: 11 KRLISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAEC---------------------- 48
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
+Q+LDE CTCFVRDGKTYCKRDY+RL+G KC KCN+ F + DFVMRA++K+YH+
Sbjct: 49 ------SQYLDETCTCFVRDGKTYCKRDYIRLYGIKCAKCNIGFSKNDFVMRARSKVYHI 102
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENN 163
+CF CV C +QL+PGDEFALREDGLFC+ DH+ ++++S G ++
Sbjct: 103 ECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGASD 145
>gi|44194074|gb|AAS46773.1| insulin enhancer binding protein [Rattus norvegicus]
Length = 326
Score = 213 bits (541), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 95/163 (58%), Positives = 119/163 (73%), Gaps = 28/163 (17%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
KR +SLCVGCG QIHDQYILRV+PDLEWHAACL+CAEC
Sbjct: 11 KRLISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAEC---------------------- 48
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
NQ+LDE+CTCFVRDGKTY KRDY+RL+G KC KC++ F + DFVMRA++K+YH+
Sbjct: 49 ------NQYLDESCTCFVRDGKTYSKRDYIRLYGIKCAKCSIGFSKNDFVMRARSKVYHI 102
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENN 163
+CF CV C +QL+PGDEFALREDGLFC+ DH+ ++++S G +
Sbjct: 103 ECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGAGD 145
>gi|410922098|ref|XP_003974520.1| PREDICTED: insulin gene enhancer protein isl-1-like [Takifugu
rubripes]
Length = 331
Score = 212 bits (540), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 94/158 (59%), Positives = 118/158 (74%), Gaps = 28/158 (17%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
KR +SLCVGCG QIHDQYILRV+PDLEWHAACL+CAEC
Sbjct: 11 KRLVSLCVGCGNQIHDQYILRVSPDLEWHAACLKCAEC---------------------- 48
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
+Q+LDE+CTCFVRDGKTYCKRDY+RL+G KC KCN+ F + DFVMRA++K+YH+
Sbjct: 49 ------SQYLDESCTCFVRDGKTYCKRDYIRLYGIKCAKCNIGFSKNDFVMRARSKVYHI 102
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSS 158
+CF CV C +QL+PGDEFALR+DGLFC+ DH+ ++++S
Sbjct: 103 ECFRCVACSRQLIPGDEFALRDDGLFCRADHDVVERAS 140
>gi|158254920|dbj|BAF83431.1| unnamed protein product [Homo sapiens]
Length = 349
Score = 212 bits (539), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 96/163 (58%), Positives = 119/163 (73%), Gaps = 28/163 (17%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
KR +SLCVGCG QIHDQYILRV+PDLEWHAACL+CAEC
Sbjct: 11 KRLISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAEC---------------------- 48
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
NQ LDE+CTCFVRDGKTYCKRDY+RL+G KC KC++ F + DFVMRA++K+YH+
Sbjct: 49 ------NQCLDESCTCFVRDGKTYCKRDYIRLYGIKCAKCSIGFSKNDFVMRARSKVYHI 102
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENN 163
+CF CV C +QL+PGDEFALREDGLFC+ DH+ ++++S G +
Sbjct: 103 ECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGAGD 145
>gi|157119485|ref|XP_001653405.1| insulinprotein enhancer protein isl [Aedes aegypti]
gi|108883188|gb|EAT47413.1| AAEL001500-PA, partial [Aedes aegypti]
Length = 398
Score = 211 bits (538), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 104/174 (59%), Positives = 122/174 (70%), Gaps = 30/174 (17%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K RLSLCVGCGGQIHDQYILRVAPDLEWHAACL+C EC
Sbjct: 1 KERLSLCVGCGGQIHDQYILRVAPDLEWHAACLKCQEC---------------------- 38
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
QFLDE+CTCFVRDGKTYCKRDYVRLFGTKC+KC +F + DFVMRAK KIYH+
Sbjct: 39 ------RQFLDESCTCFVRDGKTYCKRDYVRLFGTKCDKCGSSFSKNDFVMRAKTKIYHI 92
Query: 121 QCFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGMDKSSNGENNNNNTNINNNL 173
+CF C C +QL+PGDEFALR+ G L+CK+DH+ ++K SN + + NNN+
Sbjct: 93 ECFRCSACARQLIPGDEFALRDGGALYCKEDHDHLEK-SNQNSLIQSVEPNNNI 145
>gi|143347423|gb|ABO93221.1| Islet [Platynereis dumerilii]
Length = 414
Score = 209 bits (533), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 94/160 (58%), Positives = 114/160 (71%), Gaps = 28/160 (17%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
++ S+CVGCG +I DQYILRVAPDLEWHAACL+CA+C
Sbjct: 16 RKHSSMCVGCGSKIQDQYILRVAPDLEWHAACLKCADC---------------------- 53
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
+QFLDE CTCFVR+GKTYCKRDY RLFGTKC +C +F + DFVMRA+NKIYH+
Sbjct: 54 ------DQFLDETCTCFVREGKTYCKRDYARLFGTKCARCTESFSKNDFVMRARNKIYHI 107
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNG 160
CF CV C +QL+PGDEFALR+DGLFCK DHE ++++ NG
Sbjct: 108 DCFRCVACSRQLIPGDEFALRDDGLFCKSDHEVLERAQNG 147
>gi|170053181|ref|XP_001862556.1| insulin protein enhancer protein isl [Culex quinquefasciatus]
gi|167873811|gb|EDS37194.1| insulin protein enhancer protein isl [Culex quinquefasciatus]
Length = 438
Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 100/160 (62%), Positives = 116/160 (72%), Gaps = 29/160 (18%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K RLSLCVGCG QIHDQYILRVAPDLEWHAACL+C ECHQFLD
Sbjct: 21 KERLSLCVGCGTQIHDQYILRVAPDLEWHAACLKCQECHQFLD----------------- 63
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
E+CTCFVRDGKTYCKRDYVRLFGTKC+KC +F + DFVMRAK+KIYH+
Sbjct: 64 -----------ESCTCFVRDGKTYCKRDYVRLFGTKCDKCGNSFSKNDFVMRAKSKIYHI 112
Query: 121 QCFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGMDKSSN 159
+CF C +C K L PGDEFALR+ G L+CK+DH+ ++K+S
Sbjct: 113 ECFRCSLCMKHLQPGDEFALRDGGALYCKEDHDHLEKTSQ 152
>gi|328707561|ref|XP_003243430.1| PREDICTED: insulin gene enhancer protein isl-1-like isoform 2
[Acyrthosiphon pisum]
Length = 487
Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 96/152 (63%), Positives = 111/152 (73%), Gaps = 28/152 (18%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
+RRLSLCVGCGG I+DQYIL+VAPDLEWHAACL+CAECHQFLD
Sbjct: 70 RRRLSLCVGCGGAINDQYILKVAPDLEWHAACLKCAECHQFLD----------------- 112
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
E+CTCFVRDGKTYCK DYVRLFGTKC+KCNL+F R + VMRAK K+YH+
Sbjct: 113 -----------EHCTCFVRDGKTYCKLDYVRLFGTKCDKCNLSFDRTELVMRAKTKVYHM 161
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHE 152
+CF C C +QL+PGDEFALR+D L CK DH+
Sbjct: 162 ECFRCNACSRQLIPGDEFALRDDTLLCKQDHD 193
>gi|258645165|ref|NP_001158279.1| tailup [Tribolium castaneum]
Length = 431
Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 98/159 (61%), Positives = 115/159 (72%), Gaps = 29/159 (18%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
RRLS CVGCGGQIHDQYILRVAPDLEWHAACL+C EC
Sbjct: 44 PRRLSHCVGCGGQIHDQYILRVAPDLEWHAACLKCQEC---------------------- 81
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
QFLDE+CTCFVRDGKTYCKRDYVRLFG KC++C +F ++DFVMRAK+KIYH+
Sbjct: 82 ------RQFLDESCTCFVRDGKTYCKRDYVRLFGAKCDRCGSSFSKDDFVMRAKSKIYHI 135
Query: 121 QCFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGMDKSS 158
+CF C C + LVPGDEFALR+ G L+CK+DH+ M+K+S
Sbjct: 136 KCFKCCACSRPLVPGDEFALRDGGNLYCKEDHDHMEKTS 174
>gi|270011029|gb|EFA07477.1| tailup [Tribolium castaneum]
Length = 411
Score = 206 bits (525), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 98/159 (61%), Positives = 115/159 (72%), Gaps = 29/159 (18%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
RRLS CVGCGGQIHDQYILRVAPDLEWHAACL+C EC
Sbjct: 20 PRRLSHCVGCGGQIHDQYILRVAPDLEWHAACLKCQEC---------------------- 57
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
QFLDE+CTCFVRDGKTYCKRDYVRLFG KC++C +F ++DFVMRAK+KIYH+
Sbjct: 58 ------RQFLDESCTCFVRDGKTYCKRDYVRLFGAKCDRCGSSFSKDDFVMRAKSKIYHI 111
Query: 121 QCFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGMDKSS 158
+CF C C + LVPGDEFALR+ G L+CK+DH+ M+K+S
Sbjct: 112 KCFKCCACSRPLVPGDEFALRDGGNLYCKEDHDHMEKTS 150
>gi|328707559|ref|XP_001944557.2| PREDICTED: insulin gene enhancer protein isl-1-like isoform 1
[Acyrthosiphon pisum]
Length = 513
Score = 206 bits (524), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 96/152 (63%), Positives = 111/152 (73%), Gaps = 28/152 (18%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
+RRLSLCVGCGG I+DQYIL+VAPDLEWHAACL+CAECHQFLD
Sbjct: 96 RRRLSLCVGCGGAINDQYILKVAPDLEWHAACLKCAECHQFLD----------------- 138
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
E+CTCFVRDGKTYCK DYVRLFGTKC+KCNL+F R + VMRAK K+YH+
Sbjct: 139 -----------EHCTCFVRDGKTYCKLDYVRLFGTKCDKCNLSFDRTELVMRAKTKVYHM 187
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHE 152
+CF C C +QL+PGDEFALR+D L CK DH+
Sbjct: 188 ECFRCNACSRQLIPGDEFALRDDTLLCKQDHD 219
>gi|259013450|ref|NP_001158468.1| ISL LIM homeobox 1 [Saccoglossus kowalevskii]
gi|197320557|gb|ACH68440.1| islet homeobox protein [Saccoglossus kowalevskii]
Length = 383
Score = 206 bits (523), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 96/158 (60%), Positives = 114/158 (72%), Gaps = 28/158 (17%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
KRR+SLCVGCG QI DQ+ILRVAPDLEWHA+CL+C +C
Sbjct: 10 KRRVSLCVGCGNQIQDQFILRVAPDLEWHASCLKCTDC---------------------- 47
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
NQ+LDE CTCFVRD KTYCKR YVRLFGTKC KCNL F + DFVMRA+NKI+H+
Sbjct: 48 ------NQYLDETCTCFVRDSKTYCKRCYVRLFGTKCAKCNLGFSKNDFVMRARNKIFHI 101
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSS 158
CF CV C +QL+PGDEFALR+DGLFCK DH+ ++++S
Sbjct: 102 DCFRCVACSRQLIPGDEFALRDDGLFCKADHDVVERAS 139
>gi|194758653|ref|XP_001961576.1| GF14867 [Drosophila ananassae]
gi|190615273|gb|EDV30797.1| GF14867 [Drosophila ananassae]
Length = 550
Score = 205 bits (522), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 97/157 (61%), Positives = 114/157 (72%), Gaps = 29/157 (18%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K+RLS CVGCGGQIHDQYILRVAPDLEWHAACL+C EC
Sbjct: 50 KQRLSHCVGCGGQIHDQYILRVAPDLEWHAACLKCQEC---------------------- 87
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
QFLDE+CTCFVRDGKTYCKRDYVRLFGTKC+KC +F + DFVMRAK KI+H+
Sbjct: 88 ------RQFLDESCTCFVRDGKTYCKRDYVRLFGTKCDKCGNSFSKNDFVMRAKTKIFHI 141
Query: 121 QCFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGMDK 156
+CF C C +QL+PGDEFALR+ G L+CK+DH+ ++K
Sbjct: 142 ECFRCSACARQLLPGDEFALRDAGALYCKEDHDVLEK 178
>gi|195484275|ref|XP_002090625.1| GE12696 [Drosophila yakuba]
gi|194176726|gb|EDW90337.1| GE12696 [Drosophila yakuba]
Length = 540
Score = 205 bits (521), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 97/157 (61%), Positives = 114/157 (72%), Gaps = 29/157 (18%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K+RLS CVGCGGQIHDQYILRVAPDLEWHAACL+C EC
Sbjct: 48 KQRLSHCVGCGGQIHDQYILRVAPDLEWHAACLKCQEC---------------------- 85
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
QFLDE+CTCFVRDGKTYCKRDYVRLFGTKC+KC +F + DFVMRAK KI+H+
Sbjct: 86 ------RQFLDESCTCFVRDGKTYCKRDYVRLFGTKCDKCGNSFSKNDFVMRAKTKIFHI 139
Query: 121 QCFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGMDK 156
+CF C C +QL+PGDEFALR+ G L+CK+DH+ ++K
Sbjct: 140 ECFRCSACARQLLPGDEFALRDAGALYCKEDHDVLEK 176
>gi|194879942|ref|XP_001974333.1| GG21675 [Drosophila erecta]
gi|190657520|gb|EDV54733.1| GG21675 [Drosophila erecta]
Length = 534
Score = 205 bits (521), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 97/157 (61%), Positives = 114/157 (72%), Gaps = 29/157 (18%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K+RLS CVGCGGQIHDQYILRVAPDLEWHAACL+C EC
Sbjct: 48 KQRLSHCVGCGGQIHDQYILRVAPDLEWHAACLKCQEC---------------------- 85
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
QFLDE+CTCFVRDGKTYCKRDYVRLFGTKC+KC +F + DFVMRAK KI+H+
Sbjct: 86 ------RQFLDESCTCFVRDGKTYCKRDYVRLFGTKCDKCGNSFSKNDFVMRAKTKIFHI 139
Query: 121 QCFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGMDK 156
+CF C C +QL+PGDEFALR+ G L+CK+DH+ ++K
Sbjct: 140 ECFRCSACARQLLPGDEFALRDAGALYCKEDHDVLEK 176
>gi|1895062|gb|AAB49892.1| LIM homeobox protein [Drosophila melanogaster]
Length = 534
Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 97/157 (61%), Positives = 114/157 (72%), Gaps = 29/157 (18%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K+RLS CVGCGGQIHDQYILRVAPDLEWHAACL+C EC
Sbjct: 48 KQRLSHCVGCGGQIHDQYILRVAPDLEWHAACLKCQEC---------------------- 85
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
QFLDE+CTCFVRDGKTYCKRDYVRLFGTKC+KC +F + DFVMRAK KI+H+
Sbjct: 86 ------RQFLDESCTCFVRDGKTYCKRDYVRLFGTKCDKCGNSFSKNDFVMRAKTKIFHI 139
Query: 121 QCFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGMDK 156
+CF C C +QL+PGDEFALR+ G L+CK+DH+ ++K
Sbjct: 140 ECFRCSACARQLLPGDEFALRDAGALYCKEDHDVLEK 176
>gi|195433046|ref|XP_002064526.1| GK23894 [Drosophila willistoni]
gi|194160611|gb|EDW75512.1| GK23894 [Drosophila willistoni]
Length = 539
Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 97/157 (61%), Positives = 114/157 (72%), Gaps = 29/157 (18%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K+RLS CVGCGGQIHDQYILRVAPDLEWHAACL+C EC
Sbjct: 46 KQRLSHCVGCGGQIHDQYILRVAPDLEWHAACLKCQEC---------------------- 83
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
QFLDE+CTCFVRDGKTYCKRDYVRLFGTKC+KC +F + DFVMRAK KI+H+
Sbjct: 84 ------RQFLDESCTCFVRDGKTYCKRDYVRLFGTKCDKCGNSFSKNDFVMRAKTKIFHI 137
Query: 121 QCFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGMDK 156
+CF C C +QL+PGDEFALR+ G L+CK+DH+ ++K
Sbjct: 138 ECFRCSACARQLLPGDEFALRDAGALYCKEDHDVLEK 174
>gi|17136568|ref|NP_476775.1| tailup, isoform A [Drosophila melanogaster]
gi|195580000|ref|XP_002079844.1| GD21801 [Drosophila simulans]
gi|7298500|gb|AAF53720.1| tailup, isoform A [Drosophila melanogaster]
gi|194191853|gb|EDX05429.1| GD21801 [Drosophila simulans]
Length = 534
Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 97/157 (61%), Positives = 114/157 (72%), Gaps = 29/157 (18%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K+RLS CVGCGGQIHDQYILRVAPDLEWHAACL+C EC
Sbjct: 48 KQRLSHCVGCGGQIHDQYILRVAPDLEWHAACLKCQEC---------------------- 85
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
QFLDE+CTCFVRDGKTYCKRDYVRLFGTKC+KC +F + DFVMRAK KI+H+
Sbjct: 86 ------RQFLDESCTCFVRDGKTYCKRDYVRLFGTKCDKCGNSFSKNDFVMRAKTKIFHI 139
Query: 121 QCFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGMDK 156
+CF C C +QL+PGDEFALR+ G L+CK+DH+ ++K
Sbjct: 140 ECFRCSACARQLLPGDEFALRDAGALYCKEDHDVLEK 176
>gi|195344936|ref|XP_002039032.1| GM17053 [Drosophila sechellia]
gi|194134162|gb|EDW55678.1| GM17053 [Drosophila sechellia]
Length = 534
Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 97/157 (61%), Positives = 114/157 (72%), Gaps = 29/157 (18%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K+RLS CVGCGGQIHDQYILRVAPDLEWHAACL+C EC
Sbjct: 48 KQRLSHCVGCGGQIHDQYILRVAPDLEWHAACLKCQEC---------------------- 85
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
QFLDE+CTCFVRDGKTYCKRDYVRLFGTKC+KC +F + DFVMRAK KI+H+
Sbjct: 86 ------RQFLDESCTCFVRDGKTYCKRDYVRLFGTKCDKCGNSFSKNDFVMRAKTKIFHI 139
Query: 121 QCFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGMDK 156
+CF C C +QL+PGDEFALR+ G L+CK+DH+ ++K
Sbjct: 140 ECFRCSACARQLLPGDEFALRDAGALYCKEDHDVLEK 176
>gi|198473929|ref|XP_001356494.2| GA10441 [Drosophila pseudoobscura pseudoobscura]
gi|198138172|gb|EAL33558.2| GA10441 [Drosophila pseudoobscura pseudoobscura]
Length = 548
Score = 204 bits (519), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 97/157 (61%), Positives = 114/157 (72%), Gaps = 29/157 (18%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K+RLS CVGCGGQIHDQYILRVAPDLEWHAACL+C EC
Sbjct: 48 KQRLSHCVGCGGQIHDQYILRVAPDLEWHAACLKCQEC---------------------- 85
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
QFLDE+CTCFVRDGKTYCKRDYVRLFGTKC+KC +F + DFVMRAK KI+H+
Sbjct: 86 ------RQFLDESCTCFVRDGKTYCKRDYVRLFGTKCDKCGNSFSKNDFVMRAKTKIFHI 139
Query: 121 QCFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGMDK 156
+CF C C +QL+PGDEFALR+ G L+CK+DH+ ++K
Sbjct: 140 ECFRCSACARQLLPGDEFALRDAGALYCKEDHDVLEK 176
>gi|195147414|ref|XP_002014675.1| GL18825 [Drosophila persimilis]
gi|194106628|gb|EDW28671.1| GL18825 [Drosophila persimilis]
Length = 550
Score = 204 bits (519), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 97/157 (61%), Positives = 114/157 (72%), Gaps = 29/157 (18%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K+RLS CVGCGGQIHDQYILRVAPDLEWHAACL+C EC
Sbjct: 48 KQRLSHCVGCGGQIHDQYILRVAPDLEWHAACLKCQEC---------------------- 85
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
QFLDE+CTCFVRDGKTYCKRDYVRLFGTKC+KC +F + DFVMRAK KI+H+
Sbjct: 86 ------RQFLDESCTCFVRDGKTYCKRDYVRLFGTKCDKCGNSFSKNDFVMRAKTKIFHI 139
Query: 121 QCFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGMDK 156
+CF C C +QL+PGDEFALR+ G L+CK+DH+ ++K
Sbjct: 140 ECFRCSACARQLLPGDEFALRDAGALYCKEDHDVLEK 176
>gi|195386470|ref|XP_002051927.1| GJ24442 [Drosophila virilis]
gi|194148384|gb|EDW64082.1| GJ24442 [Drosophila virilis]
Length = 529
Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 97/157 (61%), Positives = 114/157 (72%), Gaps = 29/157 (18%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K+RLS CVGCGGQIHDQYILRVAPDLEWHAACL+C EC
Sbjct: 48 KQRLSHCVGCGGQIHDQYILRVAPDLEWHAACLKCQEC---------------------- 85
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
QFLDE+CTCFVRDGKTYCKRDYVRLFGTKC+KC +F + DFVMRAK KI+H+
Sbjct: 86 ------RQFLDESCTCFVRDGKTYCKRDYVRLFGTKCDKCGNSFSKNDFVMRAKTKIFHI 139
Query: 121 QCFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGMDK 156
+CF C C +QL+PGDEFALR+ G L+CK+DH+ ++K
Sbjct: 140 ECFRCSACARQLLPGDEFALRDAGALYCKEDHDVLEK 176
>gi|195114382|ref|XP_002001746.1| GI17017 [Drosophila mojavensis]
gi|193912321|gb|EDW11188.1| GI17017 [Drosophila mojavensis]
Length = 533
Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 97/157 (61%), Positives = 114/157 (72%), Gaps = 29/157 (18%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K+RLS CVGCGGQIHDQYILRVAPDLEWHAACL+C EC
Sbjct: 56 KQRLSHCVGCGGQIHDQYILRVAPDLEWHAACLKCQEC---------------------- 93
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
QFLDE+CTCFVRDGKTYCKRDYVRLFGTKC+KC +F + DFVMRAK KI+H+
Sbjct: 94 ------RQFLDESCTCFVRDGKTYCKRDYVRLFGTKCDKCGNSFSKNDFVMRAKTKIFHI 147
Query: 121 QCFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGMDK 156
+CF C C +QL+PGDEFALR+ G L+CK+DH+ ++K
Sbjct: 148 ECFRCSACARQLLPGDEFALRDAGALYCKEDHDVLEK 184
>gi|17136566|ref|NP_476774.1| tailup, isoform B [Drosophila melanogaster]
gi|5052638|gb|AAD38649.1|AF145674_1 tailup [Drosophila melanogaster]
gi|22946785|gb|AAN11018.1| tailup, isoform B [Drosophila melanogaster]
gi|220942306|gb|ACL83696.1| tup-PB [synthetic construct]
gi|220952524|gb|ACL88805.1| tup-PB [synthetic construct]
Length = 465
Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 97/157 (61%), Positives = 114/157 (72%), Gaps = 29/157 (18%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K+RLS CVGCGGQIHDQYILRVAPDLEWHAACL+C EC
Sbjct: 48 KQRLSHCVGCGGQIHDQYILRVAPDLEWHAACLKCQEC---------------------- 85
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
QFLDE+CTCFVRDGKTYCKRDYVRLFGTKC+KC +F + DFVMRAK KI+H+
Sbjct: 86 ------RQFLDESCTCFVRDGKTYCKRDYVRLFGTKCDKCGNSFSKNDFVMRAKTKIFHI 139
Query: 121 QCFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGMDK 156
+CF C C +QL+PGDEFALR+ G L+CK+DH+ ++K
Sbjct: 140 ECFRCSACARQLLPGDEFALRDAGALYCKEDHDVLEK 176
>gi|156552953|ref|XP_001603153.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Nasonia
vitripennis]
Length = 458
Score = 203 bits (516), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 96/155 (61%), Positives = 110/155 (70%), Gaps = 28/155 (18%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K R SLCVGCGG+IHDQ+ILRVAPDLEWHAACL+CA C
Sbjct: 41 KSRSSLCVGCGGRIHDQWILRVAPDLEWHAACLKCAAC---------------------- 78
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
QFLDE+CTCFVRDGKTYCK DYVRLFGTKC+KC +F + DFVMRAK KIYH+
Sbjct: 79 ------QQFLDESCTCFVRDGKTYCKDDYVRLFGTKCDKCRQSFNKNDFVMRAKTKIYHL 132
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMD 155
+CF C C +QLVPGDEFALR DGLFC+ DH+ ++
Sbjct: 133 ECFRCSACMRQLVPGDEFALRSDGLFCRHDHDALE 167
>gi|74096249|ref|NP_001027767.1| LIM homeodomain protein [Ciona intestinalis]
gi|3150146|emb|CAA06919.1| LIM homeodomain protein [Ciona intestinalis]
Length = 381
Score = 202 bits (513), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 94/150 (62%), Positives = 106/150 (70%), Gaps = 28/150 (18%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R+ LCVGCG IHDQYILRVAP+LEWHA CL+CA+C
Sbjct: 15 RIPLCVGCGSPIHDQYILRVAPNLEWHAGCLKCADC------------------------ 50
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQC 122
Q+LDE CTCFVRDGKTYCKRDY RLFGTKC KC L F + DFVMRA++KIYH+QC
Sbjct: 51 ----GQYLDETCTCFVRDGKTYCKRDYTRLFGTKCNKCGLCFSKNDFVMRARDKIYHIQC 106
Query: 123 FCCVVCGKQLVPGDEFALREDGLFCKDDHE 152
F CV C +QL+PGDEFALR+DGLFCK DHE
Sbjct: 107 FKCVACSRQLIPGDEFALRDDGLFCKADHE 136
>gi|70570020|dbj|BAE06522.1| transcription factor protein [Ciona intestinalis]
Length = 402
Score = 202 bits (513), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 94/150 (62%), Positives = 106/150 (70%), Gaps = 28/150 (18%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R+ LCVGCG IHDQYILRVAP+LEWHA CL+CA+C
Sbjct: 36 RIPLCVGCGSPIHDQYILRVAPNLEWHAGCLKCADC------------------------ 71
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQC 122
Q+LDE CTCFVRDGKTYCKRDY RLFGTKC KC L F + DFVMRA++KIYH+QC
Sbjct: 72 ----GQYLDETCTCFVRDGKTYCKRDYTRLFGTKCNKCGLCFSKNDFVMRARDKIYHIQC 127
Query: 123 FCCVVCGKQLVPGDEFALREDGLFCKDDHE 152
F CV C +QL+PGDEFALR+DGLFCK DHE
Sbjct: 128 FKCVACSRQLIPGDEFALRDDGLFCKADHE 157
>gi|356577835|ref|XP_003557027.1| PREDICTED: insulin gene enhancer protein isl-1-like, partial
[Glycine max]
Length = 289
Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 97/157 (61%), Positives = 114/157 (72%), Gaps = 29/157 (18%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K+RLS CVGCGGQIHDQYILRVAPDLEWHAACL+C EC
Sbjct: 1 KQRLSHCVGCGGQIHDQYILRVAPDLEWHAACLKCQEC---------------------- 38
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
QFLDE+CTCFVRDGKTYCKRDYVRLFGTKC+KC +F + DFVMRAK KI+H+
Sbjct: 39 ------RQFLDESCTCFVRDGKTYCKRDYVRLFGTKCDKCGNSFSKNDFVMRAKTKIFHI 92
Query: 121 QCFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGMDK 156
+CF C C +QL+PGDEFALR+ G L+CK+DH+ ++K
Sbjct: 93 ECFRCSSCARQLLPGDEFALRDGGALYCKEDHDMLEK 129
>gi|340717324|ref|XP_003397134.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Bombus
terrestris]
gi|350407611|ref|XP_003488142.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Bombus
impatiens]
Length = 458
Score = 198 bits (504), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 93/152 (61%), Positives = 111/152 (73%), Gaps = 28/152 (18%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K S CVGCGG+IHDQ+ILRVAP+LEWHAACL+CAEC
Sbjct: 47 KSTSSHCVGCGGRIHDQWILRVAPNLEWHAACLKCAEC---------------------- 84
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
QFLDE+CTCFVRDGKTYCKRDYVRLFGTKC+KC+ F ++D+VMRA++KIYH+
Sbjct: 85 ------QQFLDEHCTCFVRDGKTYCKRDYVRLFGTKCDKCSECFSKDDYVMRARSKIYHI 138
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHE 152
+CF C C +QLVPGDEFALR+DGLFC+ DH+
Sbjct: 139 KCFRCSACMRQLVPGDEFALRQDGLFCRHDHD 170
>gi|383858654|ref|XP_003704814.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Megachile
rotundata]
Length = 416
Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 94/155 (60%), Positives = 113/155 (72%), Gaps = 28/155 (18%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K S CVGCGG+IHDQ+ILRVAP+LEWHAACL+CAEC
Sbjct: 5 KSTSSHCVGCGGRIHDQWILRVAPNLEWHAACLKCAEC---------------------- 42
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
QFLDE+CTCFVRDGKTYCKRDYVRLFGTKC+KC+ F ++D+VMRAK+KIYH+
Sbjct: 43 ------QQFLDEHCTCFVRDGKTYCKRDYVRLFGTKCDKCSECFSKDDYVMRAKSKIYHI 96
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMD 155
+CF C C +QLVPGDEFALR+DGLFC+ DH+ ++
Sbjct: 97 KCFRCSACMRQLVPGDEFALRQDGLFCRHDHDVLE 131
>gi|380018327|ref|XP_003693083.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Apis florea]
Length = 419
Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 92/151 (60%), Positives = 112/151 (74%), Gaps = 28/151 (18%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S CVGCGG+IHDQ+ILRVAP+LEWHAACL+CAEC
Sbjct: 12 SHCVGCGGRIHDQWILRVAPNLEWHAACLKCAEC-------------------------- 45
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
QFLDE+CTCFVRDGKTYCKRDYVRLFGTKC+KC+ F ++D+VMRA++KIYH++CF
Sbjct: 46 --QQFLDEHCTCFVRDGKTYCKRDYVRLFGTKCDKCSECFSKDDYVMRARSKIYHIKCFR 103
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEGMD 155
C C +QLVPGDEFALR+DGLFC+ DH+ ++
Sbjct: 104 CSACMRQLVPGDEFALRQDGLFCRHDHDVLE 134
>gi|328793255|ref|XP_003251852.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Apis
mellifera]
Length = 418
Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 92/151 (60%), Positives = 112/151 (74%), Gaps = 28/151 (18%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S CVGCGG+IHDQ+ILRVAP+LEWHAACL+CAEC
Sbjct: 11 SHCVGCGGRIHDQWILRVAPNLEWHAACLKCAEC-------------------------- 44
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
QFLDE+CTCFVRDGKTYCKRDYVRLFGTKC+KC+ F ++D+VMRA++KIYH++CF
Sbjct: 45 --QQFLDEHCTCFVRDGKTYCKRDYVRLFGTKCDKCSECFSKDDYVMRARSKIYHIKCFR 102
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEGMD 155
C C +QLVPGDEFALR+DGLFC+ DH+ ++
Sbjct: 103 CSACMRQLVPGDEFALRQDGLFCRHDHDVLE 133
>gi|348500124|ref|XP_003437623.1| PREDICTED: insulin gene enhancer protein ISL-3-like [Oreochromis
niloticus]
Length = 360
Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 91/172 (52%), Positives = 115/172 (66%), Gaps = 28/172 (16%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K ++CVGCG QIHDQYILRV+PDLEWHAACL+CAEC
Sbjct: 21 KPGFAMCVGCGSQIHDQYILRVSPDLEWHAACLKCAEC---------------------- 58
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
+Q+LDE CTCFVRDGKTYCKRDYVRLFG KC KCNL F D VMRA++ +YH+
Sbjct: 59 ------SQYLDETCTCFVRDGKTYCKRDYVRLFGIKCAKCNLGFSSSDLVMRARDNVYHI 112
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNNTNINNN 172
+CF C VC +QL+PGDEF+LRE+ L C+ DH + + S+ + + +I++N
Sbjct: 113 ECFRCSVCSRQLLPGDEFSLREEELLCRADHSLLLERSSAGSPVSPGHIHSN 164
>gi|296194639|ref|XP_002745038.1| PREDICTED: insulin gene enhancer protein ISL-1 [Callithrix jacchus]
Length = 348
Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 91/163 (55%), Positives = 113/163 (69%), Gaps = 29/163 (17%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
KR +SLCVGCG QIHDQYILRV+PDLEWHAACL+CAEC
Sbjct: 11 KRLISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAEC---------------------- 48
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
NQ+LDE+CTCFVRDGKTYCKRDY+RL+G KC ++ F + DFVMRA++K+YH+
Sbjct: 49 ------NQYLDESCTCFVRDGKTYCKRDYIRLYGIKCAXXSIGFSKNDFVMRARSKVYHI 102
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENN 163
+CF CV PGDEFALREDGLFC+ DH+ ++++S G +
Sbjct: 103 ECFRCVAAAPAH-PGDEFALREDGLFCRADHDVVERASLGAGD 144
>gi|410912158|ref|XP_003969557.1| PREDICTED: insulin gene enhancer protein ISL-3-like [Takifugu
rubripes]
Length = 359
Score = 196 bits (499), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 94/176 (53%), Positives = 117/176 (66%), Gaps = 30/176 (17%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K+ ++CVGCG QIHDQYIL+V+PDLEWHAACL+CAEC
Sbjct: 21 KQGFAMCVGCGSQIHDQYILKVSPDLEWHAACLKCAEC---------------------- 58
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
+Q+LDE CTCFVRDGKTYCKRDYVRLFG KC KCNL F D VMRA++ +YH+
Sbjct: 59 ------SQYLDETCTCFVRDGKTYCKRDYVRLFGIKCAKCNLGFSSSDLVMRARDHVYHI 112
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEG-MDKSSNGEN-NNNNTNINNNLH 174
+CF C VC +QL+PGDEF+LRE+ L C+ DH ++KSS G + + + N LH
Sbjct: 113 ECFRCSVCSRQLLPGDEFSLREEELLCRADHSILLEKSSAGSPISPGHLHSNRALH 168
>gi|195084069|ref|XP_001997398.1| GH23605 [Drosophila grimshawi]
gi|193905450|gb|EDW04317.1| GH23605 [Drosophila grimshawi]
Length = 203
Score = 196 bits (499), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 97/157 (61%), Positives = 114/157 (72%), Gaps = 29/157 (18%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K+RLS CVGCGGQIHDQYILRVAPDLEWHAACL+C EC
Sbjct: 32 KQRLSHCVGCGGQIHDQYILRVAPDLEWHAACLKCQEC---------------------- 69
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
QFLDE+CTCFVRDGKTYCKRDYVRLFGTKC+KC +F + DFVMRAK KI+H+
Sbjct: 70 ------RQFLDESCTCFVRDGKTYCKRDYVRLFGTKCDKCGNSFSKNDFVMRAKTKIFHI 123
Query: 121 QCFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGMDK 156
+CF C C +QL+PGDEFALR+ G L+CK+DH+ ++K
Sbjct: 124 ECFRCSACARQLLPGDEFALRDAGALYCKEDHDVLEK 160
>gi|1708565|sp|P53409.1|ISL3_ONCTS RecName: Full=Insulin gene enhancer protein ISL-3; Short=Islet-3
Length = 363
Score = 196 bits (498), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 93/176 (52%), Positives = 117/176 (66%), Gaps = 30/176 (17%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K ++CVGCG QIHDQYILRV+PDLEWHAACL+CAEC
Sbjct: 21 KSGFAMCVGCGSQIHDQYILRVSPDLEWHAACLKCAEC---------------------- 58
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
+Q+LDE CTCFVRDGKTYCKRDYVRLFG KC KCNL F D VMRA++ +YH+
Sbjct: 59 ------SQYLDETCTCFVRDGKTYCKRDYVRLFGIKCAKCNLGFSSSDLVMRARDNVYHI 112
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHE-GMDKSSNGEN-NNNNTNINNNLH 174
+CF C VC +QL+PGDEF+LR++ L C+ DH M+++S G + + + N +LH
Sbjct: 113 ECFRCSVCSRQLLPGDEFSLRDEELLCRADHSLLMERTSAGSPISPGHIHSNRSLH 168
>gi|432861700|ref|XP_004069695.1| PREDICTED: insulin gene enhancer protein isl-2a-like [Oryzias
latipes]
Length = 358
Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 91/174 (52%), Positives = 113/174 (64%), Gaps = 28/174 (16%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K +++CVGCG QIHDQYILRV+PDLEWHAACL+CAEC
Sbjct: 21 KSGIAMCVGCGSQIHDQYILRVSPDLEWHAACLKCAEC---------------------- 58
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
NQ+LDE CTCFVRDGKTYCKRDY RLFG KC KCN F D VMRA+ K+YH+
Sbjct: 59 ------NQYLDETCTCFVRDGKTYCKRDYARLFGIKCAKCNTGFCSSDLVMRAREKVYHM 112
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNNTNINNNLH 174
+CF C VC + L+PGDEF+LRED L C+ +H+ ++++S G + + LH
Sbjct: 113 ECFRCSVCSRHLLPGDEFSLREDELLCRANHDLLERASAGSPLSPDNLHKRTLH 166
>gi|47217859|emb|CAG02352.1| unnamed protein product [Tetraodon nigroviridis]
Length = 235
Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 91/172 (52%), Positives = 116/172 (67%), Gaps = 28/172 (16%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K+ ++CVGCG QIHDQYILRV+PDLEWHAACL+CAEC
Sbjct: 21 KQGFAMCVGCGSQIHDQYILRVSPDLEWHAACLKCAEC---------------------- 58
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
+Q+LDE CTCFVRDGKTYCKRDYVRLFG KC KCNL F D VMRA++ +YH+
Sbjct: 59 ------SQYLDETCTCFVRDGKTYCKRDYVRLFGIKCAKCNLGFSSSDLVMRARDHVYHI 112
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNNTNINNN 172
+CF C VC +QL+PGDEF+LRE+ L C+ DH + + S+ + + +I++N
Sbjct: 113 ECFRCSVCSRQLLPGDEFSLREEELLCRADHSLLLERSSAGSPISPGHIHSN 164
>gi|391340116|ref|XP_003744391.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Metaseiulus
occidentalis]
Length = 460
Score = 194 bits (493), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 90/157 (57%), Positives = 106/157 (67%), Gaps = 28/157 (17%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+SLCVGCG QI DQYILRV+PDLEWHA+CL+C EC QFLD
Sbjct: 101 ISLCVGCGSQIQDQYILRVSPDLEWHASCLKCVECLQFLD-------------------- 140
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
E+CTCFVR+GKTYCK DY RLFG KC KC L+F R DFVMRA+ KI+H+ CF
Sbjct: 141 --------ESCTCFVREGKTYCKSDYHRLFGAKCSKCGLSFSRSDFVMRARGKIFHIDCF 192
Query: 124 CCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNG 160
C+ C +QL+PGDEFA+RED LFCK DH+ + NG
Sbjct: 193 RCIACSRQLIPGDEFAIREDELFCKADHDVLGPRGNG 229
>gi|307209962|gb|EFN86739.1| Insulin gene enhancer protein ISL-1 [Harpegnathos saltator]
Length = 407
Score = 191 bits (486), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 93/153 (60%), Positives = 109/153 (71%), Gaps = 28/153 (18%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R SLCVGCGG+IHDQ+ILRVAP+LEWHAACL+CAEC
Sbjct: 1 RSSLCVGCGGRIHDQWILRVAPNLEWHAACLKCAEC------------------------ 36
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQC 122
QFLDE CTCFVRDGKTYCKRDYVRLFGTKC+KC+ F + D+VMRAK KIYHV+C
Sbjct: 37 ----QQFLDEKCTCFVRDGKTYCKRDYVRLFGTKCDKCSQCFSKNDYVMRAKTKIYHVEC 92
Query: 123 FCCVVCGKQLVPGDEFALREDGLFCKDDHEGMD 155
F C C ++L GDEFALR+DGLFC+ DH+ ++
Sbjct: 93 FRCCACMRRLETGDEFALRQDGLFCRHDHDVLE 125
>gi|307184076|gb|EFN70611.1| Insulin gene enhancer protein ISL-1 [Camponotus floridanus]
Length = 408
Score = 191 bits (486), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 93/153 (60%), Positives = 109/153 (71%), Gaps = 28/153 (18%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R SLCVGCGG+IHDQ+ILRVAP+LEWHAACL+CAEC
Sbjct: 1 RSSLCVGCGGRIHDQWILRVAPNLEWHAACLKCAEC------------------------ 36
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQC 122
QFLDE CTCFVRDGKTYCKRDYVRLFGTKC+KC+ F + D+VMRAK KIYHV+C
Sbjct: 37 ----QQFLDEKCTCFVRDGKTYCKRDYVRLFGTKCDKCSQCFSKNDYVMRAKTKIYHVEC 92
Query: 123 FCCVVCGKQLVPGDEFALREDGLFCKDDHEGMD 155
F C C ++L GDEFALR+DGLFC+ DH+ ++
Sbjct: 93 FRCCACMRRLETGDEFALRQDGLFCRHDHDVLE 125
>gi|18858909|ref|NP_571039.1| insulin gene enhancer protein isl-2b [Danio rerio]
gi|1708564|sp|P53407.1|ISL2B_DANRE RecName: Full=Insulin gene enhancer protein isl-2b; Short=Islet-2B;
AltName: Full=Insulin gene enhancer protein isl-3;
Short=Islet-3
gi|1037168|dbj|BAA07485.1| zfIsl-3 [Danio rerio]
gi|55962547|emb|CAI11499.1| islet 3 [Danio rerio]
gi|63100507|gb|AAH95011.1| Islet2b [Danio rerio]
Length = 358
Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 89/171 (52%), Positives = 110/171 (64%), Gaps = 28/171 (16%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K L++CVGCG QIHDQYILRV+PDLEWHAACL+C EC
Sbjct: 21 KSGLAMCVGCGSQIHDQYILRVSPDLEWHAACLKCVEC---------------------- 58
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
NQ+LDE CTCFVRDGKTYCKRDYVRLFG KC KC L F D VMRA++ +YH+
Sbjct: 59 ------NQYLDETCTCFVRDGKTYCKRDYVRLFGIKCAKCTLGFSSSDLVMRARDSVYHI 112
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNNTNINN 171
+CF C VC +QL+PGDEF++R++ L C+ DH + G + + NI+
Sbjct: 113 ECFRCSVCSRQLLPGDEFSVRDEELLCRADHGLALERGPGGSPLSPGNIHT 163
>gi|1708558|sp|P50212.1|ISL2B_ONCTS RecName: Full=Insulin gene enhancer protein ISL-2B; Short=Islet-2B
gi|64209|emb|CAA46102.1| isl-1 [Oncorhynchus tshawytscha]
gi|1094403|prf||2106150A LIM domain homeobox protein
Length = 340
Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 90/175 (51%), Positives = 116/175 (66%), Gaps = 29/175 (16%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K +++CVGCG QIHDQYILRVAPDLEWHAACL+C+EC
Sbjct: 3 KSGIAMCVGCGSQIHDQYILRVAPDLEWHAACLKCSEC---------------------- 40
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
+Q+LDE CTCFVRDGKTYCKRDYVRLFG KC KCN+ F D VMRA++ +YH+
Sbjct: 41 ------SQYLDETCTCFVRDGKTYCKRDYVRLFGIKCAKCNIGFCSSDLVMRARDNVYHM 94
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHE-GMDKSSNGENNNNNTNINNNLH 174
+CF C VC +QLVPGDEF+LR++ L C+ DH ++++S G + ++ + H
Sbjct: 95 ECFRCSVCSRQLVPGDEFSLRDEELLCRADHGLLLERASAGSPISPGNILSRSFH 149
>gi|348505840|ref|XP_003440468.1| PREDICTED: insulin gene enhancer protein isl-2a-like [Oreochromis
niloticus]
Length = 359
Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/181 (50%), Positives = 117/181 (64%), Gaps = 28/181 (15%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K +++CVGCG QIHDQYILRV+PDLEWHAACL+CAEC
Sbjct: 21 KSGIAMCVGCGSQIHDQYILRVSPDLEWHAACLKCAEC---------------------- 58
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
NQ LDE CTCFVRDGKTYCKRDY RLFG KC KCN+ F D VMRA++ +YH+
Sbjct: 59 ------NQHLDETCTCFVRDGKTYCKRDYARLFGIKCAKCNMGFCSSDLVMRARDNVYHM 112
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNNTNINNNLHNLNNEG 180
+CF C VC + L+PGDEF+LR+D L C+ DH M + ++ + + NI+N ++++
Sbjct: 113 ECFRCSVCSRHLLPGDEFSLRDDELLCRADHGLMMERASAGSPLSPGNIHNRPLHISDPV 172
Query: 181 S 181
S
Sbjct: 173 S 173
>gi|410908008|ref|XP_003967483.1| PREDICTED: insulin gene enhancer protein ISL-2A-like [Takifugu
rubripes]
Length = 359
Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 91/175 (52%), Positives = 114/175 (65%), Gaps = 29/175 (16%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K +++CVGCG QIHDQYI+RV+PDLEWHAACL+CAEC
Sbjct: 21 KSGIAMCVGCGSQIHDQYIMRVSPDLEWHAACLKCAEC---------------------- 58
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
+Q+LDE CTCFVRDGKTYCKRDY RLFG KC KCN+ F D VMRA++ +YH+
Sbjct: 59 ------SQYLDETCTCFVRDGKTYCKRDYARLFGIKCAKCNMGFCSSDLVMRARDSVYHM 112
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDH-EGMDKSSNGENNNNNTNINNNLH 174
+CF C VC + L+PGDEF+LRED L C+ DH M+++S G + T + LH
Sbjct: 113 ECFRCSVCCRHLLPGDEFSLREDELLCRADHCLLMERASAGSPLSPGTIHSRPLH 167
>gi|126272190|ref|XP_001362509.1| PREDICTED: insulin gene enhancer protein ISL-2 [Monodelphis
domestica]
Length = 359
Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 89/183 (48%), Positives = 119/183 (65%), Gaps = 31/183 (16%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K +++CVGCG QIHDQYIL+V+PDLEWHAACL+CAEC
Sbjct: 21 KPGIAMCVGCGSQIHDQYILKVSPDLEWHAACLKCAEC---------------------- 58
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
+Q+LDE CTCFVR+GKTYCKRDY+RLFG KC KC + F D VMRA+ +YH+
Sbjct: 59 ------SQYLDETCTCFVRNGKTYCKRDYIRLFGIKCAKCKVGFSSSDLVMRARENVYHI 112
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNNTNINNN--LHNLNN 178
+CF C VC +QL+PGDEF+LR+ L C+ DH + ++GE+ + ++ ++ LH L+
Sbjct: 113 ECFRCSVCSRQLLPGDEFSLRDHELLCRADHSLLLDRASGESPRSPGHLPSSRGLH-LSE 171
Query: 179 EGS 181
GS
Sbjct: 172 PGS 174
>gi|332023208|gb|EGI63464.1| Insulin gene enhancer protein ISL-1 [Acromyrmex echinatior]
Length = 432
Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 92/151 (60%), Positives = 108/151 (71%), Gaps = 28/151 (18%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
SLCVGCGG+IHDQ+ILRVAP+LEWHAACL+CAEC
Sbjct: 27 SLCVGCGGRIHDQWILRVAPNLEWHAACLKCAEC-------------------------- 60
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
QFLDE CTCFVRDGKTYCKRDYVRLFGTKC+KC+ F + D+VMRAK KIYHV+CF
Sbjct: 61 --QQFLDEKCTCFVRDGKTYCKRDYVRLFGTKCDKCSRCFSKNDYVMRAKTKIYHVECFR 118
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEGMD 155
C C ++L GDEFALR+DGLFC+ DH+ ++
Sbjct: 119 CCACSRRLETGDEFALRQDGLFCRLDHDVLE 149
>gi|321469905|gb|EFX80883.1| hypothetical protein DAPPUDRAFT_50562 [Daphnia pulex]
Length = 315
Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 92/147 (62%), Positives = 104/147 (70%), Gaps = 29/147 (19%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
CVGCG I DQYILRVAPDLEWHA+CL+C EC
Sbjct: 1 CVGCGSPIQDQYILRVAPDLEWHASCLKCVEC---------------------------- 32
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
FLDENCTCFVRDGKT+C+RDYVRLFG KC+KC L F R DFVMRAK+KIYH++CF C
Sbjct: 33 GIFLDENCTCFVRDGKTFCRRDYVRLFGAKCDKCGLGFSRSDFVMRAKSKIYHIECFRCA 92
Query: 127 VCGKQLVPGDEFALREDG-LFCKDDHE 152
+C +QLVPGDEFALR+DG LFCKDDH+
Sbjct: 93 LCQRQLVPGDEFALRDDGNLFCKDDHD 119
>gi|109081997|ref|XP_001105068.1| PREDICTED: insulin gene enhancer protein ISL-2 isoform 2 [Macaca
mulatta]
Length = 359
Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 88/179 (49%), Positives = 114/179 (63%), Gaps = 29/179 (16%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++CVGCG QIHDQ+ILRV+PDLEWHAACL+CAEC
Sbjct: 25 AMCVGCGSQIHDQFILRVSPDLEWHAACLKCAEC-------------------------- 58
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+Q+LDE CTCFVRDGKTYCKRDYVRLFG KC KC + F D VMRA++ +YH++CF
Sbjct: 59 --SQYLDETCTCFVRDGKTYCKRDYVRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFR 116
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE-GMDKSSNGENNNNNTNINNNLHNLNNEGSN 182
C VC +QL+PGDEF+LRE L C+ DH +++++ G + + +L + GS
Sbjct: 117 CSVCSRQLLPGDEFSLREHELLCRADHGLLLERAAAGSPRSPGPLPGSRGLHLPDAGSG 175
>gi|241688853|ref|XP_002411721.1| LIM domain containing protein [Ixodes scapularis]
gi|215504541|gb|EEC14035.1| LIM domain containing protein [Ixodes scapularis]
Length = 173
Score = 190 bits (482), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 91/152 (59%), Positives = 103/152 (67%), Gaps = 28/152 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+CVGCG I DQYILRVAPDLEWHAACL+CA+C
Sbjct: 26 VCVGCGAPIRDQYILRVAPDLEWHAACLKCADC--------------------------- 58
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
QFLDE CTCFVRDGKTYCKRDYVRLFG KC KC F R DFVMRA+ IYH+ CF C
Sbjct: 59 -QQFLDETCTCFVRDGKTYCKRDYVRLFGAKCSKCQQGFSRTDFVMRARQHIYHLDCFRC 117
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKS 157
C +QL+PGDEFALR+DGLFC+ DH+ +DK+
Sbjct: 118 QACARQLIPGDEFALRDDGLFCRADHDVLDKT 149
>gi|13516919|dbj|BAB40339.1| islet [Halocynthia roretzi]
Length = 432
Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 93/185 (50%), Positives = 118/185 (63%), Gaps = 33/185 (17%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R+ LCVGCG I DQY+LRVAP+LEWHA CL+CA+C
Sbjct: 21 RVPLCVGCGTPIQDQYMLRVAPNLEWHAGCLKCADC------------------------ 56
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQC 122
LDE+ TCFVRDGKTYCK+DY+ LFGTKC KC L F + DFVMRA+NKIYH++C
Sbjct: 57 ----GLHLDESRTCFVRDGKTYCKQDYIMLFGTKCNKCGLGFTKNDFVMRARNKIYHIEC 112
Query: 123 FCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKS-----SNGENNNNNTNINNNLHNLN 177
F CV C KQL+PGDEFALREDGLFCK DH+ ++++ +N N+ + N + ++
Sbjct: 113 FKCVACSKQLIPGDEFALREDGLFCKADHDVVERNCLVGDVLSLSNGNDHRMTNGMSPMS 172
Query: 178 NEGSN 182
+ N
Sbjct: 173 MQSGN 177
>gi|296475432|tpg|DAA17547.1| TPA: ISL LIM homeobox 2 [Bos taurus]
gi|440909295|gb|ELR59218.1| Insulin enhancer protein ISL-2 [Bos grunniens mutus]
Length = 359
Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 88/179 (49%), Positives = 113/179 (63%), Gaps = 29/179 (16%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++CVGCG QIHDQ+ILRV+PDLEWHAACL+CAEC
Sbjct: 25 AMCVGCGSQIHDQFILRVSPDLEWHAACLKCAEC-------------------------- 58
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+Q+LDE CTCFVRDGKTYCKRDYVRLFG KC KC + F D VMRA++ +YH++CF
Sbjct: 59 --SQYLDETCTCFVRDGKTYCKRDYVRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFR 116
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE-GMDKSSNGENNNNNTNINNNLHNLNNEGSN 182
C VC +QL+PGDEF+LRE L C+ DH +++++ G + +L + GS
Sbjct: 117 CSVCSRQLLPGDEFSLREHELLCRADHGLLLERAAAGSPRSPGPLPGARGLHLPDPGSG 175
>gi|426248250|ref|XP_004017877.1| PREDICTED: LOW QUALITY PROTEIN: insulin gene enhancer protein ISL-2
[Ovis aries]
Length = 366
Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 88/179 (49%), Positives = 113/179 (63%), Gaps = 29/179 (16%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++CVGCG QIHDQ+ILRV+PDLEWHAACL+CAEC
Sbjct: 25 AMCVGCGSQIHDQFILRVSPDLEWHAACLKCAEC-------------------------- 58
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+Q+LDE CTCFVRDGKTYCKRDYVRLFG KC KC + F D VMRA++ +YH++CF
Sbjct: 59 --SQYLDETCTCFVRDGKTYCKRDYVRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFR 116
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE-GMDKSSNGENNNNNTNINNNLHNLNNEGSN 182
C VC +QL+PGDEF+LRE L C+ DH +++++ G + +L + GS
Sbjct: 117 CSVCSRQLLPGDEFSLREHELLCRADHGLLLERAAAGSPRSPGPLPGARGLHLPDPGSG 175
>gi|300795417|ref|NP_001178166.1| insulin gene enhancer protein ISL-2 [Bos taurus]
Length = 359
Score = 189 bits (481), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 88/179 (49%), Positives = 113/179 (63%), Gaps = 29/179 (16%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++CVGCG QIHDQ+ILRV+PDLEWHAACL+CAEC
Sbjct: 25 AMCVGCGSQIHDQFILRVSPDLEWHAACLKCAEC-------------------------- 58
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+Q+LDE CTCFVRDGKTYCKRDYVRLFG KC KC + F D VMRA++ +YH++CF
Sbjct: 59 --SQYLDETCTCFVRDGKTYCKRDYVRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFR 116
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE-GMDKSSNGENNNNNTNINNNLHNLNNEGSN 182
C VC +QL+PGDEF+LRE L C+ DH +++++ G + +L + GS
Sbjct: 117 CSVCSRQLLPGDEFSLREHELLCRADHGLLLERAAAGSPRSPGPLPGARGLHLPDPGSG 175
>gi|21956641|ref|NP_665804.1| insulin gene enhancer protein ISL-2 [Homo sapiens]
gi|114658283|ref|XP_001147206.1| PREDICTED: insulin gene enhancer protein ISL-2 isoform 1 [Pan
troglodytes]
gi|297697192|ref|XP_002825752.1| PREDICTED: insulin gene enhancer protein ISL-2 [Pongo abelii]
gi|426379888|ref|XP_004056619.1| PREDICTED: insulin gene enhancer protein ISL-2 isoform 1 [Gorilla
gorilla gorilla]
gi|20978495|sp|Q96A47.1|ISL2_HUMAN RecName: Full=Insulin gene enhancer protein ISL-2; Short=Islet-2
gi|15080438|gb|AAH11967.1| ISL LIM homeobox 2 [Homo sapiens]
gi|15082435|gb|AAH12136.1| ISL LIM homeobox 2 [Homo sapiens]
gi|119619626|gb|EAW99220.1| ISL2 transcription factor, LIM/homeodomain, (islet-2) [Homo
sapiens]
gi|167773881|gb|ABZ92375.1| ISL LIM homeobox 2 [synthetic construct]
gi|193785483|dbj|BAG50849.1| unnamed protein product [Homo sapiens]
Length = 359
Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 88/179 (49%), Positives = 113/179 (63%), Gaps = 29/179 (16%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++CVGCG QIHDQ+ILRV+PDLEWHAACL+CAEC
Sbjct: 25 AMCVGCGSQIHDQFILRVSPDLEWHAACLKCAEC-------------------------- 58
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+Q+LDE CTCFVRDGKTYCKRDYVRLFG KC KC + F D VMRA++ +YH++CF
Sbjct: 59 --SQYLDETCTCFVRDGKTYCKRDYVRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFR 116
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE-GMDKSSNGENNNNNTNINNNLHNLNNEGSN 182
C VC +QL+PGDEF+LRE L C+ DH +++++ G + +L + GS
Sbjct: 117 CSVCSRQLLPGDEFSLREHELLCRADHGLLLERAAAGSPRSPGPLPGARGLHLPDAGSG 175
>gi|395822580|ref|XP_003784594.1| PREDICTED: insulin gene enhancer protein ISL-2 [Otolemur garnettii]
Length = 359
Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 88/178 (49%), Positives = 113/178 (63%), Gaps = 29/178 (16%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++CVGCG QIHDQ+ILRV+PDLEWHAACL+CAEC
Sbjct: 25 AMCVGCGSQIHDQFILRVSPDLEWHAACLKCAEC-------------------------- 58
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+Q+LDE CTCFVRDGKTYCKRDYVRLFG KC KC + F D VMRA++ +YH++CF
Sbjct: 59 --SQYLDETCTCFVRDGKTYCKRDYVRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFR 116
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE-GMDKSSNGENNNNNTNINNNLHNLNNEGS 181
C VC +QL+PGDEF+LRE L C+ DH +++++ G + +L + GS
Sbjct: 117 CSVCSRQLLPGDEFSLREHELLCRADHGLLLERAAAGSPRSPGQLPGARGLHLPDPGS 174
>gi|296236843|ref|XP_002763501.1| PREDICTED: insulin gene enhancer protein ISL-2 [Callithrix jacchus]
Length = 359
Score = 189 bits (480), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 89/180 (49%), Positives = 115/180 (63%), Gaps = 31/180 (17%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++CVGCG QIHDQ+ILRV+PDLEWHAACL+CAEC
Sbjct: 25 AMCVGCGSQIHDQFILRVSPDLEWHAACLKCAEC-------------------------- 58
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+Q+LDE CTCFVRDGKTYCKRDYVRLFG KC KC + F D VMRA++ +YH++CF
Sbjct: 59 --SQYLDETCTCFVRDGKTYCKRDYVRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFR 116
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNNTNINN--NLHNLNNEGSN 182
C VC +QL+PGDEF+LRE L C+ DH + + + ++ + + LH L++ GS
Sbjct: 117 CSVCSRQLLPGDEFSLREHELLCRADHGLLLERAAADSPRSPGPLPGARGLH-LSDPGSG 175
>gi|18858907|ref|NP_571045.1| insulin gene enhancer protein isl-2a [Danio rerio]
gi|1708561|sp|P53406.1|ISL2A_DANRE RecName: Full=Insulin gene enhancer protein isl-2a; Short=Islet-2A;
AltName: Full=Insulin gene enhancer protein isl-2;
Short=Islet-2
gi|871001|emb|CAA61283.1| Islet-2 protein [Danio rerio]
gi|1037166|dbj|BAA07484.1| zfIsl-2 [Danio rerio]
gi|190336908|gb|AAI62631.1| Islet2a [Danio rerio]
gi|190339440|gb|AAI62833.1| Islet2a [Danio rerio]
Length = 359
Score = 189 bits (480), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 91/176 (51%), Positives = 116/176 (65%), Gaps = 30/176 (17%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K +++CVGCG QIHDQYILRV+PDLEWHAACL+CAEC
Sbjct: 21 KSGIAMCVGCGSQIHDQYILRVSPDLEWHAACLKCAEC---------------------- 58
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
+Q+LDE CTCFVRDGKTYCKRDYVRLFG KC KCN+ F D VMRA++ +YH+
Sbjct: 59 ------SQYLDETCTCFVRDGKTYCKRDYVRLFGIKCAKCNIGFCSSDLVMRARDNVYHM 112
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHE-GMDKSSNGEN-NNNNTNINNNLH 174
+CF C VC + L+PGDEF+LR++ L C+ DH M+++S G + N + + LH
Sbjct: 113 ECFRCSVCSRHLLPGDEFSLRDEELLCRADHGLLMERASAGSPISPGNIHSSRPLH 168
>gi|395501088|ref|XP_003754930.1| PREDICTED: insulin gene enhancer protein ISL-2 [Sarcophilus
harrisii]
Length = 335
Score = 189 bits (480), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 87/178 (48%), Positives = 113/178 (63%), Gaps = 30/178 (16%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+CVGCG QIHDQYIL+V+PDLEWHAACL+CAEC
Sbjct: 1 MCVGCGTQIHDQYILKVSPDLEWHAACLKCAEC--------------------------- 33
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
+Q+LDE CTCFVR+GKTYCKRDY+RLFG KC KC + F D VMRA+ +YH++CF C
Sbjct: 34 -SQYLDETCTCFVRNGKTYCKRDYIRLFGIKCAKCKVGFSSSDLVMRARENVYHIECFRC 92
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNNTNI--NNNLHNLNNEGS 181
VC +QL+PGDEF+LRE L C+ DH + ++ E+ + ++ + +LH GS
Sbjct: 93 SVCSRQLLPGDEFSLREHELLCRADHSLLLDRASAESPRSPGHLASSRSLHLSAEPGS 150
>gi|281494552|gb|ADA72028.1| Isl1/2A [Lethenteron camtschaticum]
Length = 138
Score = 189 bits (479), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 86/162 (53%), Positives = 109/162 (67%), Gaps = 28/162 (17%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S+CVGCG QI D +ILRV+PDLEWHA+CL+CAEC
Sbjct: 3 SVCVGCGAQIRDPFILRVSPDLEWHASCLKCAEC-------------------------- 36
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
Q+LDE CTCFVRDGKTYCKRDYVRLFG KC KC + F + DFVMR + +++H++CF
Sbjct: 37 --AQYLDETCTCFVRDGKTYCKRDYVRLFGIKCAKCGVGFSKTDFVMRVRTQVFHLECFR 94
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
CV C +QL+PGDEFALREDGLFC+ DHE ++++ + +
Sbjct: 95 CVACSRQLIPGDEFALREDGLFCRADHELLERAGTADGMGSP 136
>gi|339252354|ref|XP_003371400.1| insulin protein enhancer protein ISL-1 [Trichinella spiralis]
gi|316968379|gb|EFV52660.1| insulin protein enhancer protein ISL-1 [Trichinella spiralis]
Length = 1751
Score = 189 bits (479), Expect = 6e-46, Method: Composition-based stats.
Identities = 85/157 (54%), Positives = 102/157 (64%), Gaps = 28/157 (17%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+R S+C GCG +I DQYILRV+PDLEWHAACL+C +C QFLD
Sbjct: 1313 KRSSICNGCGHEILDQYILRVSPDLEWHAACLKCVDCRQFLD------------------ 1354
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
E CTCFVRDGK YCK DYVRLFG +C KC F R D+VMRAKN +YH+
Sbjct: 1355 ----------ETCTCFVRDGKPYCKLDYVRLFGVRCSKCGEVFDRNDYVMRAKNNLYHIS 1404
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSS 158
CF CVVC + L+PGDEFALR L+CK D+E +++S
Sbjct: 1405 CFKCVVCTRPLLPGDEFALRHIALYCKADYELAERNS 1441
>gi|149691761|ref|XP_001490268.1| PREDICTED: insulin gene enhancer protein ISL-2 [Equus caballus]
Length = 359
Score = 189 bits (479), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 87/179 (48%), Positives = 113/179 (63%), Gaps = 29/179 (16%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++CVGCG QIHDQ+ILRV+PDLEWHAACL+CAEC
Sbjct: 25 AMCVGCGSQIHDQFILRVSPDLEWHAACLKCAEC-------------------------- 58
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+Q+LDE CTCFVRDGKTYCKRDYVRLFG KC KC + F D VMRA++ +YH++CF
Sbjct: 59 --SQYLDETCTCFVRDGKTYCKRDYVRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFR 116
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE-GMDKSSNGENNNNNTNINNNLHNLNNEGSN 182
C VC +QL+PGDEF+LRE L C+ DH +++++ G + +L + G+
Sbjct: 117 CSVCSRQLLPGDEFSLREHELLCRADHGLLLERAAAGSPRSPGPLPGARGLHLPDPGAG 175
>gi|332844416|ref|XP_003314842.1| PREDICTED: insulin gene enhancer protein ISL-2 isoform 2 [Pan
troglodytes]
gi|426379890|ref|XP_004056620.1| PREDICTED: insulin gene enhancer protein ISL-2 isoform 2 [Gorilla
gorilla gorilla]
Length = 360
Score = 188 bits (478), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 89/180 (49%), Positives = 113/180 (62%), Gaps = 30/180 (16%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++CVGCG QIHDQ+ILRV+PDLEWHAACL+CAEC
Sbjct: 25 AMCVGCGSQIHDQFILRVSPDLEWHAACLKCAEC-------------------------- 58
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+Q+LDE CTCFVRDGKTYCKRDYVRLFG KC KC + F D VMRA++ +YH++CF
Sbjct: 59 --SQYLDETCTCFVRDGKTYCKRDYVRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFR 116
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE-GMDKSSNGENNNNNTNIN-NNLHNLNNEGSN 182
C VC +QL+PGDEF+LRE L C+ DH +++++ G + LH + GS
Sbjct: 117 CSVCSRQLLPGDEFSLREHELLCRADHGLLLERAAAGSPRSPGPLPGARGLHLPADAGSG 176
>gi|291410745|ref|XP_002721643.1| PREDICTED: ISL LIM homeobox 2 [Oryctolagus cuniculus]
Length = 359
Score = 188 bits (478), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 87/179 (48%), Positives = 112/179 (62%), Gaps = 29/179 (16%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++CVGCG QIHDQ+ILRV+PDLEWHAACL+CAEC
Sbjct: 25 AMCVGCGSQIHDQFILRVSPDLEWHAACLKCAEC-------------------------- 58
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+Q+LDE CTCFVRDGKTYCKRDYVRLFG KC KC + F D VMRA++ +YH++CF
Sbjct: 59 --SQYLDETCTCFVRDGKTYCKRDYVRLFGIKCAKCQVGFGSSDLVMRARDSVYHIECFR 116
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE-GMDKSSNGENNNNNTNINNNLHNLNNEGSN 182
C VC +QL+PGDEF+LRE L C+ DH +++++ G + +L + G
Sbjct: 117 CSVCSRQLLPGDEFSLREHELLCRADHGLLLERAAAGSPRSPGPLPGARGLHLPDPGPG 175
>gi|431920332|gb|ELK18367.1| Insulin protein enhancer protein ISL-2 [Pteropus alecto]
Length = 306
Score = 188 bits (478), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 86/177 (48%), Positives = 112/177 (63%), Gaps = 28/177 (15%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
+ CVGCG QIHDQ+ILRV+PDLEWHAACL+CAEC
Sbjct: 29 ATCVGCGSQIHDQFILRVSPDLEWHAACLKCAEC-------------------------- 62
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+Q+LDE CTCFVRDGKTYCKRDYVRLFG KC KC + F D VMRA++ +YH++CF
Sbjct: 63 --SQYLDETCTCFVRDGKTYCKRDYVRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFR 120
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNNTNINNNLHNLNNEGS 181
C VC +QL+PGDEF+LRE L C+ DH + + + + ++ + +L + G+
Sbjct: 121 CSVCSRQLLPGDEFSLREHELLCRADHGLLLERAAATSPSSPGPLPARGLHLPDPGA 177
>gi|154146254|ref|NP_081673.2| insulin gene enhancer protein ISL-2 [Mus musculus]
gi|408360153|sp|Q9CXV0.2|ISL2_MOUSE RecName: Full=Insulin gene enhancer protein ISL-2; Short=Islet-2
gi|148693907|gb|EDL25854.1| insulin related protein 2 (islet 2) [Mus musculus]
gi|183396835|gb|AAI65972.1| Insulin related protein 2 (islet 2) [synthetic construct]
Length = 359
Score = 188 bits (478), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 87/179 (48%), Positives = 113/179 (63%), Gaps = 29/179 (16%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++CVGCG QIHDQ+ILRV+PDLEWHAACL+CAEC
Sbjct: 25 AMCVGCGSQIHDQFILRVSPDLEWHAACLKCAEC-------------------------- 58
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+Q+LDE CTCFVRDGKTYCKRDYVRLFG KC +C + F D VMRA++ +YH++CF
Sbjct: 59 --SQYLDETCTCFVRDGKTYCKRDYVRLFGIKCAQCQVGFSSSDLVMRARDSVYHIECFR 116
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE-GMDKSSNGENNNNNTNINNNLHNLNNEGSN 182
C VC +QL+PGDEF+LRE L C+ DH +++++ G + +L + GS
Sbjct: 117 CSVCSRQLLPGDEFSLREHELLCRADHGLLLERAAAGSPRSPGPLPGARGLHLPDAGSG 175
>gi|149041730|gb|EDL95571.1| insulin related protein 2 (islet 2) [Rattus norvegicus]
Length = 359
Score = 188 bits (478), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 87/179 (48%), Positives = 113/179 (63%), Gaps = 29/179 (16%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++CVGCG QIHDQ+ILRV+PDLEWHAACL+CAEC
Sbjct: 25 AMCVGCGSQIHDQFILRVSPDLEWHAACLKCAEC-------------------------- 58
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+Q+LDE CTCFVRDGKTYCKRDYVRLFG KC +C + F D VMRA++ +YH++CF
Sbjct: 59 --SQYLDETCTCFVRDGKTYCKRDYVRLFGIKCAQCQVGFSSSDLVMRARDSVYHIECFR 116
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE-GMDKSSNGENNNNNTNINNNLHNLNNEGSN 182
C VC +QL+PGDEF+LRE L C+ DH +++++ G + +L + GS
Sbjct: 117 CSVCSRQLLPGDEFSLREHELLCRADHGLLLERAAAGSPRSPGPLPGARGLHLPDAGSG 175
>gi|12851555|dbj|BAB29088.1| unnamed protein product [Mus musculus]
Length = 359
Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 87/179 (48%), Positives = 112/179 (62%), Gaps = 29/179 (16%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++CVGCG QIHDQ+ILRV+PDLEWHAACL+CAEC
Sbjct: 25 AMCVGCGSQIHDQFILRVSPDLEWHAACLKCAEC-------------------------- 58
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+Q+LDE CTCFVRDGKTYCKRDYVRLFG KC +C + F D VMRA++ +YH++CF
Sbjct: 59 --SQYLDETCTCFVRDGKTYCKRDYVRLFGIKCAQCQVGFSSSDLVMRARDSVYHIECFR 116
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE-GMDKSSNGENNNNNTNINNNLHNLNNEGSN 182
C VC +QL+PGDEF+LRE L C+ DH +++++ G +L + GS
Sbjct: 117 CSVCSRQLLPGDEFSLREHELLCRADHGLLLERAAAGSPRTPGPLPGARGLHLPDAGSG 175
>gi|1708557|sp|P53408.1|ISL2A_ONCTS RecName: Full=Insulin gene enhancer protein ISL-2A; Short=Islet-2A
Length = 358
Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 90/175 (51%), Positives = 114/175 (65%), Gaps = 29/175 (16%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K +++CVGCG QIHDQYILRVAPDLEWHAACL+CAEC
Sbjct: 21 KSGIAMCVGCGSQIHDQYILRVAPDLEWHAACLKCAEC---------------------- 58
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
+Q+LDE CTCFVRDGKTYCKRDYVRLFG KC CN+ F D VMRA++ +YH+
Sbjct: 59 ------SQYLDETCTCFVRDGKTYCKRDYVRLFGIKCANCNIGFCSSDLVMRARDNVYHM 112
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHE-GMDKSSNGENNNNNTNINNNLH 174
+CF C VC + L+PGDEF+LR++ L C+ DH M+++S G + + +LH
Sbjct: 113 ECFRCSVCSRHLLPGDEFSLRDEELLCRADHGLLMEQASAGSPLSPGIIHSRSLH 167
>gi|348555669|ref|XP_003463646.1| PREDICTED: insulin gene enhancer protein ISL-2-like [Cavia
porcellus]
Length = 371
Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 83/147 (56%), Positives = 100/147 (68%), Gaps = 28/147 (19%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++CVGCG QIHDQ+ILRV+PDLEWHAACL+CAEC
Sbjct: 25 AMCVGCGSQIHDQFILRVSPDLEWHAACLKCAEC-------------------------- 58
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+Q+LDE CTCFVRDGKTYCKRDY RLFG KC KC + F D VMRA++ ++HV+CF
Sbjct: 59 --SQYLDETCTCFVRDGKTYCKRDYARLFGIKCAKCQVGFSSSDLVMRARDSVFHVECFR 116
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDH 151
C VC +QL+PGDEF+LRE L C+ DH
Sbjct: 117 CAVCSRQLLPGDEFSLREHELLCRADH 143
>gi|9994171|ref|NP_065204.1| insulin gene enhancer protein ISL-2 [Rattus norvegicus]
gi|1708563|sp|P50480.1|ISL2_RAT RecName: Full=Insulin gene enhancer protein ISL-2; Short=Islet-2
gi|531218|gb|AAA62161.1| amino acid feature: homeodomain, bp 647 .. 826; amino acid feature:
LIM1, bp 155 .. 307; amino acid feature: LIM2, bp 341 ..
493 [Rattus norvegicus]
Length = 360
Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 83/147 (56%), Positives = 101/147 (68%), Gaps = 28/147 (19%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++CVGCG QIHDQ+ILRV+PDLEWHAACL+CAEC
Sbjct: 25 AMCVGCGSQIHDQFILRVSPDLEWHAACLKCAEC-------------------------- 58
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+Q+LDE CTCFVRDGKTYCKRDYVRLFG KC +C + F D VMRA++ +YH++CF
Sbjct: 59 --SQYLDETCTCFVRDGKTYCKRDYVRLFGIKCAQCQVGFSSSDLVMRARDSVYHIECFR 116
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDH 151
C VC +QL+PGDEF+LRE L C+ DH
Sbjct: 117 CSVCSRQLLPGDEFSLREHELLCRADH 143
>gi|47225812|emb|CAF98292.1| unnamed protein product [Tetraodon nigroviridis]
Length = 360
Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 89/175 (50%), Positives = 113/175 (64%), Gaps = 29/175 (16%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K +++CVGCG QIHDQYI+RV+PDLEWHAACL+CAEC
Sbjct: 21 KSGIAMCVGCGSQIHDQYIMRVSPDLEWHAACLKCAEC---------------------- 58
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
+Q+LDE CTCFVRDGKTYCKRDY R+FG KC KCN+ F D VMRA++ +YH+
Sbjct: 59 ------SQYLDETCTCFVRDGKTYCKRDYARIFGIKCAKCNVGFCSSDLVMRARDNVYHM 112
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDH-EGMDKSSNGENNNNNTNINNNLH 174
+CF C VC + L+PGDEF+LRED L C+ DH M+++S G + + LH
Sbjct: 113 ECFRCSVCCRHLLPGDEFSLREDELLCRADHCLLMERASAGSPLSPGPIHSRPLH 167
>gi|403304937|ref|XP_003943035.1| PREDICTED: insulin gene enhancer protein ISL-2 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 359
Score = 186 bits (473), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 87/179 (48%), Positives = 111/179 (62%), Gaps = 29/179 (16%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
+ CVGCG QIHD +ILRV+PDLEWHAACL+CAEC
Sbjct: 25 ATCVGCGSQIHDPFILRVSPDLEWHAACLKCAEC-------------------------- 58
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+Q+LDE CTCFVRDGKTYCKRDYVRLFG KC KC + F D VMRA++ +YH++CF
Sbjct: 59 --SQYLDETCTCFVRDGKTYCKRDYVRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFR 116
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE-GMDKSSNGENNNNNTNINNNLHNLNNEGSN 182
C VC +QL+PGDEF+LRE L C+ DH +++++ G + +L + GS
Sbjct: 117 CSVCSRQLLPGDEFSLREHELLCRADHGLLLERAAAGSPRSPGPLPGARGLHLPDPGSG 175
>gi|34733869|gb|AAQ81867.1| islet 2 [Ambystoma mexicanum]
Length = 361
Score = 186 bits (472), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 83/158 (52%), Positives = 105/158 (66%), Gaps = 28/158 (17%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K L+LCVGCG QIHD +I+RV+PDLEWHAACL+CAEC
Sbjct: 21 KHTLALCVGCGSQIHDPFIMRVSPDLEWHAACLKCAEC---------------------- 58
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
+Q+LDE CTCFVRDGKTYCKRDY+RLFG KC +C L F D VMRA+ ++YH+
Sbjct: 59 ------SQYLDETCTCFVRDGKTYCKRDYIRLFGVKCAQCGLGFSSSDLVMRARERVYHM 112
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSS 158
+CF C +C +QL+PGDEF LRE L C+ +H +D+ +
Sbjct: 113 ECFRCSLCNRQLLPGDEFCLREHELLCRAEHSHLDREA 150
>gi|403304939|ref|XP_003943036.1| PREDICTED: insulin gene enhancer protein ISL-2 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 360
Score = 186 bits (471), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 88/180 (48%), Positives = 111/180 (61%), Gaps = 30/180 (16%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
+ CVGCG QIHD +ILRV+PDLEWHAACL+CAEC
Sbjct: 25 ATCVGCGSQIHDPFILRVSPDLEWHAACLKCAEC-------------------------- 58
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+Q+LDE CTCFVRDGKTYCKRDYVRLFG KC KC + F D VMRA++ +YH++CF
Sbjct: 59 --SQYLDETCTCFVRDGKTYCKRDYVRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFR 116
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE-GMDKSSNGENNNNNTNIN-NNLHNLNNEGSN 182
C VC +QL+PGDEF+LRE L C+ DH +++++ G + LH + GS
Sbjct: 117 CSVCSRQLLPGDEFSLREHELLCRADHGLLLERAAAGSPRSPGPLPGARGLHLPADPGSG 176
>gi|326205389|dbj|BAJ84073.1| insulin gene enhancer protein ISL-2 [Homo sapiens]
Length = 189
Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 89/184 (48%), Positives = 111/184 (60%), Gaps = 29/184 (15%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K ++CVGCG QIHDQ+ILRV+PDLEWHAACL+CAEC
Sbjct: 21 KPGTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAEC---------------------- 58
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
+Q+LDE CTCFVRDGKTYCKRDYVRLFG KC KC + F D VMRA++ +YH+
Sbjct: 59 ------SQYLDETCTCFVRDGKTYCKRDYVRLFGIKCAKCQVGFSSSDLVMRARDSVYHI 112
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNNTNINNNLHNLNNEG 180
+CF C VC +QL+PGDEF+LRE L C+ DH G+ + + L+ G
Sbjct: 113 ECFRCSVCSRQLLPGDEFSLREHELLCRADH-GLLLERAAAGSPRSPGPLPGARGLHLPG 171
Query: 181 SNSG 184
+G
Sbjct: 172 KRAG 175
>gi|301780216|ref|XP_002925525.1| PREDICTED: insulin gene enhancer protein ISL-2-like [Ailuropoda
melanoleuca]
Length = 540
Score = 176 bits (445), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 78/136 (57%), Positives = 94/136 (69%), Gaps = 28/136 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++CVGCG QIHDQ+ILRV+PDLEWHAACL+CAEC
Sbjct: 25 AMCVGCGSQIHDQFILRVSPDLEWHAACLKCAEC-------------------------- 58
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+Q+LDE CTCFVRDGKTYCKRDYVRLFG KC KC + F D VMRA++ +YH++CF
Sbjct: 59 --SQYLDETCTCFVRDGKTYCKRDYVRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFR 116
Query: 125 CVVCGKQLVPGDEFAL 140
C VC +QL+PGDEF+L
Sbjct: 117 CSVCSRQLLPGDEFSL 132
>gi|281349042|gb|EFB24626.1| hypothetical protein PANDA_015045 [Ailuropoda melanoleuca]
Length = 329
Score = 175 bits (444), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 78/136 (57%), Positives = 94/136 (69%), Gaps = 28/136 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++CVGCG QIHDQ+ILRV+PDLEWHAACL+CAEC
Sbjct: 6 AMCVGCGSQIHDQFILRVSPDLEWHAACLKCAEC-------------------------- 39
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+Q+LDE CTCFVRDGKTYCKRDYVRLFG KC KC + F D VMRA++ +YH++CF
Sbjct: 40 --SQYLDETCTCFVRDGKTYCKRDYVRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFR 97
Query: 125 CVVCGKQLVPGDEFAL 140
C VC +QL+PGDEF+L
Sbjct: 98 CSVCSRQLLPGDEFSL 113
>gi|387538435|gb|AFJ79494.1| LIM-homeodomain transcription factor islet, partial [Branchiostoma
lanceolatum]
Length = 162
Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 84/164 (51%), Positives = 107/164 (65%), Gaps = 28/164 (17%)
Query: 22 VAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDG 81
VAPDLEWHAACL+C++C NQ+LDE CT FVR+G
Sbjct: 1 VAPDLEWHAACLKCSDC----------------------------NQYLDETCTYFVREG 32
Query: 82 KTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALR 141
KTYCKR YVRLFGTKC KC+L F + DFVMRA+NKIYH+ CF CV C +QL+PGDEFALR
Sbjct: 33 KTYCKRCYVRLFGTKCAKCSLGFTKNDFVMRARNKIYHIDCFRCVACSRQLIPGDEFALR 92
Query: 142 EDGLFCKDDHEGMDKSSNGENNNNNTNINNNLHNLNNEGSNSGK 185
EDGLFCK DHE ++++SN ++N ++ + + + G+
Sbjct: 93 EDGLFCKADHEVLERASNNVDSNGRASLGSTDLEMATRPESHGR 136
>gi|260447067|ref|NP_001159513.1| ISL LIM homeobox 2 [Xenopus (Silurana) tropicalis]
gi|257043811|gb|ACV33233.1| islet 2 [Xenopus (Silurana) tropicalis]
Length = 333
Score = 166 bits (419), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 109/191 (57%), Gaps = 31/191 (16%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K L++CVGCG I DQYILRV+PDLEWHAACL+CAEC Q+LDENCTCFVRDGKTYCK
Sbjct: 21 KAGLAVCVGCGSHILDQYILRVSPDLEWHAACLKCAECSQYLDENCTCFVRDGKTYCK-- 78
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
RDY+RLF +C +C R + VMR ++YH
Sbjct: 79 --------------------------RDYIRLFSARCPRCQGTLPRSELVMRVGERVYHT 112
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNNTNINNNLHNLNNEG 180
CF C VC ++L+PG+E +LR+ L C +H + S +G ++ ++I+
Sbjct: 113 DCFRCSVCSRRLLPGEEISLRDQDLLCGAEH---NLSDSGRPSSLRSHIHKQTEKTTRVR 169
Query: 181 SNSGKIQLYLL 191
+ + QL+ L
Sbjct: 170 TVLNEKQLHTL 180
>gi|289541370|gb|ADD09808.1| LIM-homeodomain transcription factor islet protein [Branchiostoma
belcheri]
Length = 250
Score = 162 bits (409), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 72/119 (60%), Positives = 91/119 (76%)
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
NQ+LDE CTCFVRDGKTYCKR YVRLFGTKC KC+L F + DFVMRA+NKIYH+ CF CV
Sbjct: 9 NQYLDETCTCFVRDGKTYCKRCYVRLFGTKCAKCSLGFTKNDFVMRARNKIYHIDCFRCV 68
Query: 127 VCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNNTNINNNLHNLNNEGSNSGK 185
C +QL+PGDEFALREDGLFCK DHE ++++SN ++N ++ + + + G+
Sbjct: 69 ACSRQLIPGDEFALREDGLFCKTDHEVLERASNNVDSNGRASLGSTDLEMATRPESHGR 127
>gi|432105544|gb|ELK31741.1| Insulin protein enhancer protein ISL-1 [Myotis davidii]
Length = 199
Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 73/123 (59%), Positives = 87/123 (70%), Gaps = 28/123 (22%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
KR +SLCVGCG QIHDQYILRV+PDLEWHAACL+CAEC
Sbjct: 11 KRLISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAEC---------------------- 48
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
NQ+LDE+CTCFVRDGKTYCKRDY+RL+G KC KC++ F + DFVMRA+ K+YH+
Sbjct: 49 ------NQYLDESCTCFVRDGKTYCKRDYIRLYGIKCAKCSIGFSKNDFVMRARAKVYHI 102
Query: 121 QCF 123
+CF
Sbjct: 103 ECF 105
>gi|293339636|gb|ADE44110.1| tailup [Megaselia abdita]
Length = 348
Score = 159 bits (402), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 87/177 (49%), Positives = 109/177 (61%), Gaps = 39/177 (22%)
Query: 19 ILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFV 78
ILRVAPDLEWHAACL+C EC Q+LDENCTCFV
Sbjct: 1 ILRVAPDLEWHAACLKCTEC----------------------------RQYLDENCTCFV 32
Query: 79 RDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEF 138
RDGKTYCKRDYVRLF KC+KC +F R D+VMRA+ KI+H+ CF C C QL PG EF
Sbjct: 33 RDGKTYCKRDYVRLFRAKCDKCGNSFSRNDYVMRARTKIFHMDCFRCNTCAIQLKPGQEF 92
Query: 139 ALREDG-LFCKDDHEGMDKSSNGENNNN----------NTNINNNLHNLNNEGSNSG 184
ALR+ G L+CK+DH+ ++KS + N ++ N N ++ L +L++ GS SG
Sbjct: 93 ALRDGGVLYCKEDHDILEKSHSQTNISSIETNNNTNLNNNNHSSELGSLSDSGSESG 149
>gi|395735796|ref|XP_003776642.1| PREDICTED: LOW QUALITY PROTEIN: insulin gene enhancer protein ISL-1
[Pongo abelii]
Length = 382
Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 103/165 (62%), Gaps = 29/165 (17%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCA-ECHQFLDENCTCFVRDGKTYCKR 59
KR +SLCVGCG QIHDQYILRV+PDLEW CL+C Q+L+
Sbjct: 11 KRLISLCVGCGNQIHDQYILRVSPDLEWPCGCLKCGGSVIQYLER--------------- 55
Query: 60 DYVSSEKNQFLDENCTCFVRDGK-TYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIY 118
E + +GK K DY+RL+G KC KC++ F + DFVMRA++K+Y
Sbjct: 56 ------------ELYMLLLGNGKHPTVKGDYIRLYGIKCAKCSIGFSKNDFVMRARSKVY 103
Query: 119 HVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENN 163
H++CF CV C +QL+PGDEFALREDGLFC+ DH+ ++++S G +
Sbjct: 104 HIECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGAGD 148
>gi|397496393|ref|XP_003819022.1| PREDICTED: LOW QUALITY PROTEIN: insulin gene enhancer protein ISL-2
[Pan paniscus]
Length = 357
Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 72/131 (54%), Positives = 86/131 (65%), Gaps = 28/131 (21%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K ++CVGCG QIHDQ+ILRV+PDLEWHAACL+CAEC
Sbjct: 21 KPGTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAEC---------------------- 58
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
+Q+LDE CTCFVRDGKTYCKRDYVRLFG KC KC + F D VMRA++ +YH+
Sbjct: 59 ------SQYLDETCTCFVRDGKTYCKRDYVRLFGIKCAKCQVGFSSSDLVMRARDSVYHI 112
Query: 121 QCFCCVVCGKQ 131
+CF C VC +Q
Sbjct: 113 ECFRCSVCSRQ 123
>gi|449472133|ref|XP_002192003.2| PREDICTED: insulin gene enhancer protein ISL-2 [Taeniopygia
guttata]
Length = 271
Score = 155 bits (393), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 91/148 (61%), Gaps = 28/148 (18%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
L+LC GCGG+I D ++LRV+PDLEWH ACL+CAEC
Sbjct: 70 LALCAGCGGRIQDPFLLRVSPDLEWHVACLKCAEC------------------------- 104
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
Q L+E CTCF+RDGK YCK+ RLFG KC +C F D VMRA++ +YH++CF
Sbjct: 105 ---GQPLNETCTCFLRDGKAYCKQITGRLFGIKCAQCRAAFSSSDLVMRARDHVYHLECF 161
Query: 124 CCVVCGKQLVPGDEFALREDGLFCKDDH 151
C CG+QL+PGD+F LRE L C+ DH
Sbjct: 162 RCAACGRQLLPGDQFCLRERDLLCRADH 189
>gi|61200414|gb|AAX39779.1| ISL1 transcription factor, partial [Ovis aries]
Length = 243
Score = 155 bits (392), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 64/100 (64%), Positives = 86/100 (86%)
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
+E NQ+LDE+CTCFVRDGKTYCKRDY+RL+G KC KC++ F + DFVMRA++K+YH++CF
Sbjct: 4 AECNQYLDESCTCFVRDGKTYCKRDYIRLYGIKCAKCSIGFSKNDFVMRARSKVYHIECF 63
Query: 124 CCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENN 163
CV C +QL+PGDEFALREDGLFC+ DH+ ++++S G +
Sbjct: 64 RCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGAGD 103
>gi|344284256|ref|XP_003413884.1| PREDICTED: LOW QUALITY PROTEIN: insulin gene enhancer protein
ISL-2-like [Loxodonta africana]
Length = 356
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/179 (41%), Positives = 102/179 (56%), Gaps = 32/179 (17%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++CVGCG QIHDQ+ILRV+PDLEWHAACL+CAEC
Sbjct: 25 AMCVGCGSQIHDQFILRVSPDLEWHAACLKCAEC-------------------------- 58
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+Q+LDE CTCFV G+ VR+ KC KC + F D VMRA++ +YH++CF
Sbjct: 59 --SQYLDETCTCFVXXGRPRLGPQAVRI---KCAKCQVGFSSSDLVMRARDSVYHIECFR 113
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE-GMDKSSNGENNNNNTNINNNLHNLNNEGSN 182
C VC +QL+PGDEF+LRE L C+ DH +++++ G + +L + G+
Sbjct: 114 CSVCSRQLLPGDEFSLREHELLCRADHGLLLERAAAGSPRSPGPLPGARGLHLPDPGAG 172
>gi|324509239|gb|ADY43889.1| Insulin enhancer protein isl-2b [Ascaris suum]
Length = 427
Score = 149 bits (375), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 95/149 (63%), Gaps = 28/149 (18%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+R ++C GC +I D+YILRV P+LE+HA CL+C +C
Sbjct: 33 KRPAMCSGCLQEITDRYILRVHPNLEFHATCLKCTDC----------------------- 69
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
+++DE+CT FVR+GKTYCK DYVRLF TKC +C+ F R D VMRA++ +YHV
Sbjct: 70 -----ERYMDESCTAFVRNGKTYCKDDYVRLFATKCSRCDGTFGRTDLVMRARHLVYHVN 124
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDD 150
CF C+ C K+LVPG+EF +++D L+C+ D
Sbjct: 125 CFTCLSCEKRLVPGEEFIIKDDELYCRAD 153
>gi|324508533|gb|ADY43602.1| Insulin gene enhancer protein isl-2b [Ascaris suum]
Length = 452
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 95/149 (63%), Gaps = 28/149 (18%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+R ++C GC +I D+YILRV P+LE+HA CL+C +C
Sbjct: 33 KRPAMCSGCLQEITDRYILRVHPNLEFHATCLKCTDC----------------------- 69
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
+++DE+CT FVR+GKTYCK DYVRLF TKC +C+ F R D VMRA++ +YHV
Sbjct: 70 -----ERYMDESCTAFVRNGKTYCKDDYVRLFATKCSRCDGTFGRTDLVMRARHLVYHVN 124
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDD 150
CF C+ C K+LVPG+EF +++D L+C+ D
Sbjct: 125 CFTCLSCEKRLVPGEEFIIKDDELYCRAD 153
>gi|1708562|sp|P53410.1|ISL2_CHICK RecName: Full=Insulin gene enhancer protein ISL-2; Short=Islet-2
gi|531181|gb|AAA62172.1| sequence encoding 37 predicted 5' amino acids has not been
determined, partial [Gallus gallus]
Length = 319
Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 86/156 (55%), Gaps = 28/156 (17%)
Query: 18 YILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCF 77
++LRV+PDLEWH ACL+CAEC Q LDE CTCF
Sbjct: 1 FLLRVSPDLEWHVACLKCAEC----------------------------GQPLDETCTCF 32
Query: 78 VRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDE 137
+RDGK YCKRDY RLFG KC +C F D VMRA++ +YH++CF C CG+QL+PGD+
Sbjct: 33 LRDGKAYCKRDYGRLFGIKCAQCRAAFSSSDLVMRARDHVYHLECFRCAACGRQLLPGDQ 92
Query: 138 FALREDGLFCKDDHEGMDKSSNGENNNNNTNINNNL 173
F LRE L C+ DH + + +L
Sbjct: 93 FCLRERDLLCRADHGPPPDGAAARGPRSPAPPPAHL 128
>gi|50344739|ref|NP_001002043.1| islet1, like [Danio rerio]
gi|37682137|gb|AAQ97995.1| ISL1 transcription factor, LIM/homeodomain [Danio rerio]
Length = 323
Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 100/172 (58%), Gaps = 31/172 (18%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S CVGCG +I D++I+RV+PDLEWHA CL+CAECHQFLD
Sbjct: 17 SFCVGCGLEILDRFIVRVSPDLEWHARCLKCAECHQFLD--------------------- 55
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
E+CTCF+RDGKT+C+ Y RL +KC KC+ F ++FVMR++ IYHVQCF
Sbjct: 56 -------ESCTCFIRDGKTFCREHYSRLSTSKCAKCDKAFISKEFVMRSQVNIYHVQCFR 108
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSS---NGENNNNNTNINNNL 173
C C + L+ GDE+ L++ L C D H + +S E + + I + L
Sbjct: 109 CEGCNRPLLSGDEYVLQDGQLLCTDHHNKLMSASINQQKEAGDPSEEIKSTL 160
>gi|371573882|gb|AEX38311.1| islet [Mnemiopsis leidyi]
Length = 321
Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 68/143 (47%), Positives = 89/143 (62%), Gaps = 29/143 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S+C GC I DQ+ILRVAP+LEWHA+CL+C +C++FLDENCTCF+R+GK YCK+D+V
Sbjct: 9 SVCAGCRCPITDQFILRVAPNLEWHASCLKCDDCNKFLDENCTCFIREGKPYCKKDFVR- 67
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
FG KC +C+ F DFVMR + I+H+ CF
Sbjct: 68 ----------------------------FGAKCHRCDQGFSSNDFVMRVRENIFHLSCFR 99
Query: 125 CVVCGKQLVPGDEFALREDGLFC 147
C +C +QLVPG+EFAL +GL C
Sbjct: 100 CNMCSRQLVPGEEFALLPEGLIC 122
>gi|410960782|ref|XP_003986966.1| PREDICTED: LOW QUALITY PROTEIN: insulin gene enhancer protein ISL-2
[Felis catus]
Length = 354
Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 71/147 (48%), Positives = 85/147 (57%), Gaps = 33/147 (22%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++CVGCG QIHDQ+ILRV+PDLEWHAACL+CAEC Q+LDE CTCFVRDGKTYCKRDYV
Sbjct: 25 AMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYVRX 84
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+ + G +Y RL G +
Sbjct: 85 GRRE-----------PGLSY------RLLG----------------LXXXXXXXXXXXXX 111
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDH 151
C VC +QL+PGDEF+LRE L C+ DH
Sbjct: 112 CSVCSRQLLPGDEFSLREHELLCRADH 138
>gi|341925954|dbj|BAK53866.1| insulin gene enhancer protein isl-1 [Dugesia japonica]
Length = 517
Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 68/148 (45%), Positives = 85/148 (57%), Gaps = 28/148 (18%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
SLCVGCGG I D++ILRV PDLEWHA CLRC +C++ LDE TCFV+DGKTY
Sbjct: 26 SLCVGCGGAITDKFILRVQPDLEWHARCLRCVKCNRGLDEKNTCFVKDGKTY-------- 77
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
CK DY +LF C CN + D+V+ ++IYH+ C
Sbjct: 78 --------------------CKEDYQKLFLQVCAACNRGLHKSDYVLHVGSRIYHISCMK 117
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
CV C + L GDEFALR +G+ C DH+
Sbjct: 118 CVACNRILQTGDEFALRPNGVICLHDHQ 145
>gi|196013287|ref|XP_002116505.1| hypothetical protein TRIADDRAFT_30944 [Trichoplax adhaerens]
gi|190581096|gb|EDV21175.1| hypothetical protein TRIADDRAFT_30944 [Trichoplax adhaerens]
Length = 265
Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 101/181 (55%), Gaps = 28/181 (15%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+L C GCGG+I+D+YIL+VAPD+++HAACL+CA C Q LDE T
Sbjct: 13 QLPFCSGCGGKINDRYILQVAPDMQYHAACLKCASCQQLLDEKET--------------- 57
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQC 122
CF+R+GK YCK D+ LF +C KCN F+ +F+MRAK YH+ C
Sbjct: 58 -------------CFLRNGKPYCKSDFKMLFHNRCTKCNRIFEPSEFIMRAKGNPYHIDC 104
Query: 123 FCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNNTNINNNLHNLNNEGSN 182
F C C ++L+PGD + + L+CK+ + SS+ + +T +++ N +N +
Sbjct: 105 FRCHSCMRKLIPGDRYGVDTYILYCKEHYLNKMSSSSNHDTLQSTMADSDWQNSDNTDTK 164
Query: 183 S 183
S
Sbjct: 165 S 165
>gi|444730284|gb|ELW70671.1| Insulin enhancer protein ISL-2 [Tupaia chinensis]
Length = 577
Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats.
Identities = 49/61 (80%), Positives = 57/61 (93%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++CVGCG QIHDQ+ILRV+PDLEWHA+CL+CAEC Q+LDE CTCFVRDGKTYCKRDYVS
Sbjct: 36 AMCVGCGSQIHDQFILRVSPDLEWHASCLKCAECSQYLDETCTCFVRDGKTYCKRDYVSR 95
Query: 65 E 65
+
Sbjct: 96 Q 96
>gi|297294254|ref|XP_001094225.2| PREDICTED: insulin gene enhancer protein ISL-1-like [Macaca
mulatta]
Length = 286
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 53/62 (85%), Positives = 60/62 (96%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
KR +SLCVGCG QIHDQYILRV+PDLEWHAACL+CAEC+Q+LDE+CTCFVRDGKTYCKRD
Sbjct: 11 KRLISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRD 70
Query: 61 YV 62
Y+
Sbjct: 71 YI 72
>gi|17508249|ref|NP_491668.1| Protein LIM-7 [Caenorhabditis elegans]
gi|1658400|gb|AAB18328.1| CeLIM-7, partial [Caenorhabditis elegans]
gi|351020974|emb|CCD62964.1| Protein LIM-7 [Caenorhabditis elegans]
Length = 452
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 90/153 (58%), Gaps = 29/153 (18%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+++C GC +I D+Y LRV P+LE+HA CL+C +C
Sbjct: 53 MAVCAGCRLEISDRYFLRVNPNLEFHAQCLKCVQC------------------------- 87
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRA-KNKIYHVQC 122
++ LDEN T FV++G+TYC+ DY RLF T+C +C+ +F + D VMRA ++H+ C
Sbjct: 88 ---SRPLDENQTAFVKNGQTYCRDDYRRLFTTRCSRCHGDFDKTDLVMRAGPQNVFHLNC 144
Query: 123 FCCVVCGKQLVPGDEFALREDGLFCKDDHEGMD 155
F CV C K+L G+EF ++ + L+C+ D G+D
Sbjct: 145 FACVACEKRLQTGEEFQIKNNSLYCRSDCRGLD 177
>gi|62859667|ref|NP_001016720.1| ISL LIM homeobox 1 [Xenopus (Silurana) tropicalis]
Length = 135
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/62 (85%), Positives = 58/62 (93%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
KR +SLCVGCG QIHDQYILRV+PDLEWHAACL+CAEC Q+LDE CTCFVRDGKTYCKRD
Sbjct: 11 KRLISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRD 70
Query: 61 YV 62
Y+
Sbjct: 71 YI 72
>gi|306020805|gb|ADM79456.1| islet [Cupiennius salei]
Length = 249
Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 65/85 (76%), Gaps = 3/85 (3%)
Query: 79 RDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEF 138
RDGKTYCKRDY RLFG KC +CN++ + DFVMRA+++IYH+ CF C+ C +QL+PGDEF
Sbjct: 1 RDGKTYCKRDYFRLFGIKCARCNVSLSKSDFVMRARSQIYHIDCFRCIACARQLLPGDEF 60
Query: 139 ALREDGLFCKDDH---EGMDKSSNG 160
AL+EDGL CK +H DK NG
Sbjct: 61 ALKEDGLCCKSEHCTLAITDKKPNG 85
>gi|1079258|pir||S52089 transcription factor isl-2a (clone S3) - chinook salmon
Length = 91
Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 52/59 (88%), Positives = 56/59 (94%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
++CVGCG QIHDQYILRVAPDLEWHAACL+CAEC Q+LDE CTCFVRDGKTYCKRDYVS
Sbjct: 1 AMCVGCGSQIHDQYILRVAPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYVS 59
>gi|268565351|ref|XP_002639418.1| C. briggsae CBR-LIM-7 protein [Caenorhabditis briggsae]
Length = 458
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 94/163 (57%), Gaps = 28/163 (17%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
++ +++C GC +I D+Y LRV PD+E+HA CL+CA+C + LDEN T FV+DG TYCK D
Sbjct: 52 QQPMAVCAGCRLEIADRYFLRVHPDMEFHAHCLKCAQCARPLDENQTAFVKDGHTYCKDD 111
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKN-KIYH 119
Y S K T+C +C+ F + D VMRA + ++H
Sbjct: 112 YRSIFKT---------------------------TRCTRCHGEFDKSDLVMRAGDLNVFH 144
Query: 120 VQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGEN 162
+ CF CV C K+L G+EF ++ + ++C+ D +G+++ ++
Sbjct: 145 LHCFSCVACEKRLQTGEEFQIKNNNVYCRADCQGIERPDRSDS 187
>gi|111307610|gb|AAI20881.1| Isl2 protein [Mus musculus]
gi|157423231|gb|AAI48308.2| Isl2 protein [Mus musculus]
Length = 174
Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/62 (80%), Positives = 56/62 (90%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K ++CVGCG QIHDQ+ILRV+PDLEWHAACL+CAEC Q+LDE CTCFVRDGKTYCKRD
Sbjct: 21 KPGTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRD 80
Query: 61 YV 62
YV
Sbjct: 81 YV 82
>gi|359070468|ref|XP_002691651.2| PREDICTED: uncharacterized protein LOC100337389 [Bos taurus]
Length = 779
Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats.
Identities = 56/148 (37%), Positives = 74/148 (50%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GC I D++++RV + WH CL+CA C Q L
Sbjct: 431 AVCEGCQRPISDRFLMRVN-ESSWHEECLQCAACQQAL---------------------- 467
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFC
Sbjct: 468 --------TTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFC 519
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C VC +QL GDEF L+E L CK D+E
Sbjct: 520 CCVCERQLRKGDEFVLKEGQLLCKGDYE 547
>gi|296482212|tpg|DAA24327.1| TPA: LIM homeobox transcription factor 1, beta-like [Bos taurus]
Length = 1019
Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats.
Identities = 56/148 (37%), Positives = 74/148 (50%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GC I D++++RV + WH CL+CA C Q L
Sbjct: 671 AVCEGCQRPISDRFLMRVN-ESSWHEECLQCAACQQAL---------------------- 707
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFC
Sbjct: 708 --------TTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFC 759
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C VC +QL GDEF L+E L CK D+E
Sbjct: 760 CCVCERQLRKGDEFVLKEGQLLCKGDYE 787
>gi|345325463|ref|XP_003430923.1| PREDICTED: hypothetical protein LOC100085508 [Ornithorhynchus
anatinus]
Length = 884
Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats.
Identities = 66/187 (35%), Positives = 86/187 (45%), Gaps = 35/187 (18%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
++ C GC I D++IL+V D WH +CL+CA+C L + CF R G YCK D+
Sbjct: 576 KIPQCAGCNQHILDKFILKVL-DRHWHGSCLKCADCQMQLADR--CFSRAGSVYCKEDF- 631
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQC 122
F R FGTKC C V +A++ +YH+ C
Sbjct: 632 --------------FKR-------------FGTKCTACQQGIPPTQVVRKAQDFVYHLHC 664
Query: 123 FCCVVCGKQLVPGDEFALREDG-LFCKDDHEGM---DKSSNGENNNNNTNINNNLHNLNN 178
F C++C +QL GDEF L EDG L CK+D+E D S G T L L N
Sbjct: 665 FACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLKN 724
Query: 179 EGSNSGK 185
NS K
Sbjct: 725 AYKNSPK 731
>gi|114626799|ref|XP_001141606.1| PREDICTED: LIM homeobox transcription factor 1-beta [Pan
troglodytes]
Length = 623
Score = 115 bits (288), Expect = 8e-24, Method: Composition-based stats.
Identities = 56/148 (37%), Positives = 74/148 (50%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GC I D++++RV + WH CL+CA C Q L
Sbjct: 275 AVCEGCQRPISDRFLMRVN-ESSWHEECLQCAACQQAL---------------------- 311
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFC
Sbjct: 312 --------TTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFC 363
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C VC +QL GDEF L+E L CK D+E
Sbjct: 364 CCVCERQLRKGDEFVLKEGQLLCKGDYE 391
>gi|355692896|gb|EHH27499.1| Insulin gene enhancer protein ISL-2 [Macaca mulatta]
Length = 310
Score = 115 bits (288), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 47/57 (82%), Positives = 53/57 (92%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
++CVGCG QIHDQ+ILRV+PDL WHAACL+CAEC Q+LDE CTCFVRDGKTYCKRDY
Sbjct: 25 AMCVGCGSQIHDQFILRVSPDLGWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDY 81
>gi|390458375|ref|XP_002743346.2| PREDICTED: LIM homeobox transcription factor 1-beta [Callithrix
jacchus]
Length = 638
Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats.
Identities = 56/148 (37%), Positives = 74/148 (50%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GC I D++++RV + WH CL+CA C Q L
Sbjct: 290 AVCEGCQRPISDRFLMRVN-ESSWHEECLQCAACQQAL---------------------- 326
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFC
Sbjct: 327 --------TTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFC 378
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C VC +QL GDEF L+E L CK D+E
Sbjct: 379 CCVCERQLRKGDEFVLKEGQLLCKGDYE 406
>gi|120537751|gb|AAI29375.1| Lhx4 protein [Danio rerio]
Length = 244
Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 87/188 (46%), Gaps = 35/188 (18%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+++ C GC I D++IL+V D WH+ CL+CA+CH L + C
Sbjct: 26 QQIPQCAGCSQHILDKFILKVL-DRHWHSKCLKCADCHALLADKC--------------- 69
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
F R G YCK D+ + FGTKC C V +A++ +YH+
Sbjct: 70 ---------------FSRAGNVYCKEDFFKRFGTKCASCQQGIPPTQVVRKAQDFVYHLH 114
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGM---DKSSNGENNNNNTNINNNLHNLN 177
CF CV+C +QL GDEF L EDG L CK+D+E D S G T L L
Sbjct: 115 CFACVMCSRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSETGAKRPRTTITAKQLETLK 174
Query: 178 NEGSNSGK 185
+ NS K
Sbjct: 175 SAYKNSPK 182
>gi|393908929|gb|EJD75252.1| transcription factor protein [Loa loa]
Length = 594
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 56/147 (38%), Positives = 79/147 (53%), Gaps = 29/147 (19%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
LC+GC +I D ++LRV+PDLE+HA CL+C +C +LDE+CT ++R+ K YCK DY+
Sbjct: 192 LCIGCLQEIRDPFVLRVSPDLEFHARCLKCEQCECYLDESCTAYIRNNKPYCKEDYIR-- 249
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
+ D K KC +C + D VM+ + YH CF C
Sbjct: 250 ------------ITDAK-------------KCIRCKEYISKTDMVMKIRTLTYHATCFSC 284
Query: 126 VVCGKQLVPGDEFAL--REDGLFCKDD 150
C K+L G+EF L RED + C+ D
Sbjct: 285 SNCDKKLTIGEEFVLREREDDILCRAD 311
>gi|171916111|ref|NP_001116445.1| LIM/homeobox protein Lhx4 [Danio rerio]
Length = 391
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 87/188 (46%), Gaps = 35/188 (18%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+++ C GC I D++IL+V D WH+ CL+CA+CH L + C
Sbjct: 28 QQIPQCAGCSQHILDKFILKVL-DRHWHSKCLKCADCHALLADKC--------------- 71
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
F R G YCK D+ + FGTKC C V +A++ +YH+
Sbjct: 72 ---------------FSRAGNVYCKEDFFKRFGTKCASCQQGIPPTQVVRKAQDFVYHLH 116
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGM---DKSSNGENNNNNTNINNNLHNLN 177
CF CV+C +QL GDEF L EDG L CK+D+E D S G T L L
Sbjct: 117 CFACVMCSRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSETGAKRPRTTITAKQLETLK 176
Query: 178 NEGSNSGK 185
+ NS K
Sbjct: 177 SAYKNSPK 184
>gi|595301|gb|AAA80275.1| LIM domain homeobox protein, partial [Danio rerio]
Length = 167
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 49/93 (52%), Positives = 65/93 (69%)
Query: 79 RDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEF 138
RDGKTYCKRDYVRLFG KC KC L F D VMRA++ +YH++CF C VC +QL+PGDEF
Sbjct: 1 RDGKTYCKRDYVRLFGIKCAKCTLGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEF 60
Query: 139 ALREDGLFCKDDHEGMDKSSNGENNNNNTNINN 171
++R++ L C+ DH + G + + NI+
Sbjct: 61 SVRDEELLCRADHGLALERGPGGSPLSPGNIHT 93
>gi|225543484|ref|NP_001139388.1| apterous [Tribolium castaneum]
gi|224459214|gb|ACN43342.1| apterous b [Tribolium castaneum]
Length = 361
Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 78/152 (51%), Gaps = 30/152 (19%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
+ C GCGG+I D+Y L +A D +WHA+CL+C EC
Sbjct: 28 TTCAGCGGRIQDRYYL-LAVDRQWHASCLKCCEC-------------------------- 60
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFG-TKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
LD TCF RDG YCK DY R+F T+C +C + VMRA++ +YH+ CF
Sbjct: 61 --KLPLDTELTCFARDGNIYCKEDYYRMFAVTRCGRCQAGISANELVMRARDSVYHLHCF 118
Query: 124 CCVVCGKQLVPGDEFALREDGLFCKDDHEGMD 155
C CG L GD F +R+ ++C+ +E +D
Sbjct: 119 SCTSCGMPLSKGDHFGMRDGLIYCRPHYELLD 150
>gi|260828933|ref|XP_002609417.1| LIM class homeodomain transcription factor, Lhx6/8 subclass
[Branchiostoma floridae]
gi|229294773|gb|EEN65427.1| LIM class homeodomain transcription factor, Lhx6/8 subclass
[Branchiostoma floridae]
Length = 292
Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 83/161 (51%), Gaps = 30/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
LC GCGG I D+++L+V + +WH CLRC+ C L + TC+ R+ +C
Sbjct: 50 LCTGCGGPIQDKFLLKVG-ERQWHVKCLRCSVCQTPLGRHTTCYTREADVFC-------- 100
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
K DY+R FGTKC KC N + D+V RAK +YH+ CF C
Sbjct: 101 --------------------KADYIRQFGTKCAKCCRNIQSNDWVRRAKTHVYHLACFAC 140
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDH-EGMDKSSNGENNNN 165
C +QL G+EFAL + + CK + E MD ++ N ++
Sbjct: 141 DACKRQLSTGEEFALHDGKVLCKSHYLEAMDAAAGSGNGSD 181
>gi|487805|gb|AAA80274.1| LIM domain homeobox protein, partial [Danio rerio]
Length = 167
Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 70/98 (71%), Gaps = 2/98 (2%)
Query: 79 RDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEF 138
RDGKTYCKRDYVRLFG KC KCN+ F D VMRA++ +YH++CF C VC + L+PGDEF
Sbjct: 1 RDGKTYCKRDYVRLFGIKCAKCNIGFCSSDLVMRARDNVYHMECFRCSVCSRHLLPGDEF 60
Query: 139 ALREDGLFCKDDHE-GMDKSSNGEN-NNNNTNINNNLH 174
+LR++ L C+ DH M+++S G + N + + LH
Sbjct: 61 SLRDEELLCRADHGLLMERASAGSPISPGNIHSSRPLH 98
>gi|301615074|ref|XP_002937009.1| PREDICTED: LIM/homeobox protein Lhx4-like [Xenopus (Silurana)
tropicalis]
Length = 385
Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 85/189 (44%), Gaps = 35/189 (18%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
+ + C GC I D++IL+V D WH+ACL+C EC L E C
Sbjct: 33 PKEIPRCSGCNEHILDKFILKVL-DRHWHSACLKCCECQVPLAERC-------------- 77
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
F R G YCK D+ + FGTKC C V +A++ +YH+
Sbjct: 78 ----------------FYRAGNVYCKEDFFKCFGTKCTACQQGIPPTQVVRKAQDFVYHL 121
Query: 121 QCFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGM---DKSSNGENNNNNTNINNNLHNL 176
CF C++C +QL GDEF L EDG L CK+D+E D S G T L L
Sbjct: 122 HCFSCIICSRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEGGAKRPRTTITAKQLETL 181
Query: 177 NNEGSNSGK 185
N NS K
Sbjct: 182 KNAYKNSPK 190
>gi|260793680|ref|XP_002591839.1| LIM class homeodomain transcription factor, Lhx3 subclass
[Branchiostoma floridae]
gi|229277050|gb|EEN47850.1| LIM class homeodomain transcription factor, Lhx3 subclass
[Branchiostoma floridae]
Length = 278
Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 84/187 (44%), Gaps = 36/187 (19%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ C GC I D++IL+V D WHA CL+C++C L + C
Sbjct: 38 IPKCAGCEQVILDRFILKVL-DRSWHAKCLQCSDCQAQLTDKC----------------- 79
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F RDG YCK D+ R FGTKC C V RA++KIYH+QCF
Sbjct: 80 -------------FSRDGHVYCKDDFFRRFGTKCAGCGQGIPPTQVVRRAQDKIYHLQCF 126
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHEGMDKSS---NGENNNNNTNIN-NNLHNLNN 178
C++C +QL GDEF L ED L CK D+E + G T I L L
Sbjct: 127 ACIMCKRQLATGDEFYLMEDAKLVCKSDYEAAKQREMELEGTQKRPRTTITAKQLETLKQ 186
Query: 179 EGSNSGK 185
NS K
Sbjct: 187 AYQNSPK 193
>gi|383850854|ref|XP_003700989.1| PREDICTED: protein apterous-like [Megachile rotundata]
Length = 620
Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 53/149 (35%), Positives = 76/149 (51%), Gaps = 31/149 (20%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C GCG +I D++ L+ A D WHAACL+C+ C Q LD TCF RDG YC
Sbjct: 244 VCAGCGLRISDRFYLQ-AVDRRWHAACLQCSHCRQGLDGEVTCFSRDGNIYC-------- 294
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGT--KCEKCNLNFKREDFVMRAKNKIYHVQCF 123
K+DY R+FG+ +C +C + VMRA++ ++HV+CF
Sbjct: 295 --------------------KKDYYRMFGSMKRCARCQAAILASELVMRARDLVFHVRCF 334
Query: 124 CCVVCGKQLVPGDEFALREDGLFCKDDHE 152
C C L GD F +R+ + C+ +E
Sbjct: 335 SCAACAVPLTKGDHFGMRDGAVLCRLHYE 363
>gi|363736513|ref|XP_001235592.2| PREDICTED: LIM/homeobox protein Lhx4 [Gallus gallus]
Length = 374
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 87/188 (46%), Gaps = 35/188 (18%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
R++ C GC I D++IL+V D WH++CL+CA+C L E CF R G Y
Sbjct: 11 RQIPQCAGCSQHILDKFILKVL-DRHWHSSCLKCADCQMQLAER--CFARAGSVY----- 62
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
CK D+ + FGTKC C V +A++ +YH+
Sbjct: 63 -----------------------CKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLH 99
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGM---DKSSNGENNNNNTNINNNLHNLN 177
CF C++C +QL GDEF L EDG L CK+D+E D S G T L L
Sbjct: 100 CFACIICSRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLK 159
Query: 178 NEGSNSGK 185
N NS K
Sbjct: 160 NAYKNSPK 167
>gi|242007294|ref|XP_002424476.1| Homeobox protein ceh-14, putative [Pediculus humanus corporis]
gi|212507894|gb|EEB11738.1| Homeobox protein ceh-14, putative [Pediculus humanus corporis]
Length = 389
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 76/147 (51%), Gaps = 31/147 (21%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C GCG +IHD+Y++RV D WH CL C C L
Sbjct: 28 MCEGCGQKIHDRYLMRVG-DTSWHEHCLSCNVCGVLLSH--------------------- 65
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
+C+ R GK YCK+DY R+FG KC +C + VMRA++ ++H+QCFCC
Sbjct: 66 ---------SCYTRSGKLYCKQDYDRIFGVKCSRCGDRILPHELVMRAQHLVFHLQCFCC 116
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHE 152
+ CG+ L G++F L+ LFC+ D E
Sbjct: 117 IACGQHLQKGEQFVLKAGQLFCRPDFE 143
>gi|229619792|dbj|BAH58094.1| LIM homeobox protein 3 [Hemicentrotus pulcherrimus]
Length = 485
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 91/191 (47%), Gaps = 38/191 (19%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
++ +SLC GC I D++IL+V D WHA CLRC +C+ L + C
Sbjct: 81 QKSISLCAGCDHPILDRFILKVV-DRAWHAKCLRCVDCNAQLTDRC-------------- 125
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
F RDG +CK D+ + FGTKC C + V RA + +YH+
Sbjct: 126 ----------------FSRDGGVFCKEDFFKRFGTKCSSCEKGIAPTEIVRRALDNVYHL 169
Query: 121 QCFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGMDKSSNGENNNNN-----TNINNNLH 174
CFCC++C +QL GDEF L D L CK D+E K+ E +N+N T L
Sbjct: 170 HCFCCIICTRQLSTGDEFFLMTDNKLVCKQDYEAA-KARELEMDNSNKRPRTTITAKQLE 228
Query: 175 NLNNEGSNSGK 185
L SNS K
Sbjct: 229 TLKTAYSNSPK 239
>gi|390335971|ref|XP_780701.3| PREDICTED: LIM/homeobox protein Lhx3-like [Strongylocentrotus
purpuratus]
Length = 545
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 91/191 (47%), Gaps = 38/191 (19%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
++ +SLC GC I D++IL+V D WHA CLRC +C+ L + C
Sbjct: 141 QKSISLCAGCDHPILDRFILKVV-DRAWHAKCLRCVDCNAQLTDRC-------------- 185
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
F RDG +CK D+ + FGTKC C + V RA + +YH+
Sbjct: 186 ----------------FSRDGGVFCKEDFFKRFGTKCSSCEKGIAPTEIVRRALDNVYHL 229
Query: 121 QCFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGMDKSSNGENNNNN-----TNINNNLH 174
CFCC++C +QL GDEF L D L CK D+E K+ E +N+N T L
Sbjct: 230 HCFCCIICTRQLSTGDEFFLMTDNKLVCKQDYEAA-KARELEMDNSNKRPRTTITAKQLE 288
Query: 175 NLNNEGSNSGK 185
L SNS K
Sbjct: 289 TLKTAYSNSPK 299
>gi|391339813|ref|XP_003744241.1| PREDICTED: sodium-coupled monocarboxylate transporter 1-like
[Metaseiulus occidentalis]
Length = 707
Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 57/169 (33%), Positives = 85/169 (50%), Gaps = 30/169 (17%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R ++C GCG I ++ L+V + WH CLRC C +C
Sbjct: 451 RGTICGGCGQLILERVQLQV-DNCSWHVDCLRCCVC------DC---------------- 487
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQC 122
L+++ TCF RD YCK+DY R FG +C KC + D+V RA++++YH+ C
Sbjct: 488 ------LLEKDSTCFFRDNNVYCKQDYARQFGVRCSKCTRGIQSSDWVRRARDQVYHLAC 541
Query: 123 FCCVVCGKQLVPGDEFALREDGLFCKDDH-EGMDKSSNGENNNNNTNIN 170
F C C +QL G+EFAL + + CK E +D S ++N + + N
Sbjct: 542 FACEECKRQLSTGEEFALHDGRVLCKIHFCELIDPGSQSTDDNADQDHN 590
>gi|308461174|ref|XP_003092882.1| CRE-LIM-7 protein [Caenorhabditis remanei]
gi|308252088|gb|EFO96040.1| CRE-LIM-7 protein [Caenorhabditis remanei]
Length = 462
Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 88/160 (55%), Gaps = 29/160 (18%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+++C GC +I D+Y +RV P+LE+H CL+C +C
Sbjct: 62 MAVCAGCRLEIADRYFMRVNPNLEFHTHCLKCVQC------------------------- 96
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRA-KNKIYHVQC 122
++ LDEN T FVR+G TYC+ DY LF T+C C F + D VM+A + ++H++C
Sbjct: 97 ---SRPLDENQTTFVRNGLTYCRDDYRSLFTTRCSGCQGEFDKTDLVMKAGPHNVFHLRC 153
Query: 123 FCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGEN 162
F C C K+L G+EF ++ + L+C+ D G+ + S ++
Sbjct: 154 FSCTACEKRLQTGEEFQIKNNSLYCRGDCRGLPEDSRPDS 193
>gi|260793678|ref|XP_002591838.1| LIM class homeodomain transcription factor, Lhx3 subclass
[Branchiostoma floridae]
gi|229277049|gb|EEN47849.1| LIM class homeodomain transcription factor, Lhx3 subclass
[Branchiostoma floridae]
Length = 402
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 84/187 (44%), Gaps = 36/187 (19%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ C GC I D++IL+V D WHA CL+C++C L + C
Sbjct: 38 IPKCAGCEQVILDRFILKVL-DRSWHAKCLQCSDCQAQLTDKC----------------- 79
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F RDG YCK D+ R FGTKC C V RA++KIYH+QCF
Sbjct: 80 -------------FSRDGHVYCKDDFFRRFGTKCAGCGQGIPPTQVVRRAQDKIYHLQCF 126
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHEGMDKSS---NGENNNNNTNIN-NNLHNLNN 178
C++C +QL GDEF L ED L CK D+E + G T I L L
Sbjct: 127 ACIMCKRQLATGDEFYLMEDAKLVCKSDYEAAKQREMELEGTQKRPRTTITAKQLETLKQ 186
Query: 179 EGSNSGK 185
NS K
Sbjct: 187 AYQNSPK 193
>gi|449509307|ref|XP_002191188.2| PREDICTED: LIM/homeobox protein Lhx4-like, partial [Taeniopygia
guttata]
Length = 412
Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 85/186 (45%), Gaps = 35/186 (18%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ C GC I D++IL+V D WH++CL+CA+C L E CF R G Y
Sbjct: 44 IPQCAGCNQHILDKFILKVL-DRHWHSSCLKCADCQMQLAER--CFSRAGSVY------- 93
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
CK D+ + FGTKC C V +A++ +YH+ CF
Sbjct: 94 ---------------------CKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCF 132
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHEGM---DKSSNGENNNNNTNINNNLHNLNNE 179
C++C +QL GDEF L EDG L CK+D+E D S G T L L N
Sbjct: 133 ACIICSRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLKNA 192
Query: 180 GSNSGK 185
NS K
Sbjct: 193 YKNSPK 198
Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 53/103 (51%), Gaps = 5/103 (4%)
Query: 87 RDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDG-L 145
R ++R FGTKC C V +A++ +YH+ CF C++C +QL GDEF L EDG L
Sbjct: 276 RAFLR-FGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICSRQLATGDEFYLMEDGRL 334
Query: 146 FCKDDHEGM---DKSSNGENNNNNTNINNNLHNLNNEGSNSGK 185
CK+D+E D S G T L L N NS K
Sbjct: 335 VCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLKNAYKNSPK 377
>gi|270004609|gb|EFA01057.1| hypothetical protein TcasGA2_TC003974 [Tribolium castaneum]
Length = 218
Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 78/152 (51%), Gaps = 30/152 (19%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
+ C GCGG+I D+Y L +A D +WHA+CL+C EC
Sbjct: 28 TTCAGCGGRIQDRYYL-LAVDRQWHASCLKCCEC-------------------------- 60
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFG-TKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
LD TCF RDG YCK DY R+F T+C +C + VMRA++ +YH+ CF
Sbjct: 61 --KLPLDTELTCFARDGNIYCKEDYYRMFAVTRCGRCQAGISANELVMRARDSVYHLHCF 118
Query: 124 CCVVCGKQLVPGDEFALREDGLFCKDDHEGMD 155
C CG L GD F +R+ ++C+ +E +D
Sbjct: 119 SCTSCGIPLSKGDHFGMRDGLIYCRPHYELLD 150
>gi|326924792|ref|XP_003208609.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx4-like
[Meleagris gallopavo]
Length = 384
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 85/186 (45%), Gaps = 35/186 (18%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ C GC I D++IL+V D WH++CL+CA+C L E CF R G Y
Sbjct: 24 IPQCAGCSQHILDKFILKVL-DRHWHSSCLKCADCQMQLAER--CFARAGSVY------- 73
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
CK D+ + FGTKC C V +A++ +YH+ CF
Sbjct: 74 ---------------------CKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCF 112
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHEGM---DKSSNGENNNNNTNINNNLHNLNNE 179
C++C +QL GDEF L EDG L CK+D+E D S G T L L N
Sbjct: 113 ACIICSRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLKNA 172
Query: 180 GSNSGK 185
NS K
Sbjct: 173 YKNSPK 178
>gi|344308352|ref|XP_003422841.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Loxodonta africana]
Length = 403
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 86/188 (45%), Gaps = 34/188 (18%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
+R + LC GC I D++IL+ D WH+ CL+C++CH L E C
Sbjct: 30 RREIPLCAGCDQHILDRFILKAL-DRHWHSKCLKCSDCHTPLAERC-------------- 74
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
F R YC+ D+ R FGTKC C L V RA++ +YH+
Sbjct: 75 ----------------FSRGESVYCREDFFRRFGTKCAACQLGIPPTQVVRRAQDFVYHL 118
Query: 121 QCFCCVVCGKQLVPGDEFALREDG-LFCKDDHE-GMDKSSNGENNNNNTNIN-NNLHNLN 177
CF CVVC +QL GDEF L ED L CK D+E + + T I L L
Sbjct: 119 HCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLK 178
Query: 178 NEGSNSGK 185
+ +NS K
Sbjct: 179 SAYNNSPK 186
>gi|109019176|ref|XP_001115086.1| PREDICTED: LIM/homeobox protein Lhx4-like isoform 2 [Macaca
mulatta]
Length = 390
Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 86/188 (45%), Gaps = 35/188 (18%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+++ C GC I D++IL+V D WH++CL+CA+C L + C
Sbjct: 25 QQIPQCAGCNQHILDKFILKVL-DRHWHSSCLKCADCQMQLADRC--------------- 68
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
F R G YCK D R FGTKC C V +A++ +YH+
Sbjct: 69 ---------------FSRAGSVYCKEDPDRRFGTKCTACQQGIPPTQVVRKAQDFVYHLH 113
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGM---DKSSNGENNNNNTNINNNLHNLN 177
CF C++C +QL GDEF L EDG L CK+D+E D S G T L L
Sbjct: 114 CFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLK 173
Query: 178 NEGSNSGK 185
N NS K
Sbjct: 174 NAYKNSPK 181
>gi|20502369|dbj|BAB91364.1| LIM homeodomain protein [Branchiostoma belcheri]
Length = 402
Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 84/187 (44%), Gaps = 36/187 (19%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ C GC I D++IL+V D WHA CL+C++C L + C
Sbjct: 38 IPKCAGCEQVILDRFILKVL-DRSWHAKCLQCSDCQAQLTDKC----------------- 79
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F RDG YCK D+ R FGTKC C V RA++KIYH+QCF
Sbjct: 80 -------------FSRDGHVYCKDDFFRRFGTKCAGCGQGIPPTQVVRRAQDKIYHLQCF 126
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHEGMDKSS---NGENNNNNTNIN-NNLHNLNN 178
C++C +QL GDEF L ED L CK D+E + G T I L L
Sbjct: 127 ACIMCKRQLATGDEFYLMEDAKLVCKSDYEAAKQREMELEGTQKRPRTTITAKQLETLKQ 186
Query: 179 EGSNSGK 185
NS K
Sbjct: 187 AYQNSPK 193
>gi|344308350|ref|XP_003422840.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Loxodonta africana]
Length = 401
Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 85/187 (45%), Gaps = 34/187 (18%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
R + LC GC I D++IL+ D WH+ CL+C++CH L E C
Sbjct: 29 REIPLCAGCDQHILDRFILKAL-DRHWHSKCLKCSDCHTPLAERC--------------- 72
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
F R YC+ D+ R FGTKC C L V RA++ +YH+
Sbjct: 73 ---------------FSRGESVYCREDFFRRFGTKCAACQLGIPPTQVVRRAQDFVYHLH 117
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHE-GMDKSSNGENNNNNTNIN-NNLHNLNN 178
CF CVVC +QL GDEF L ED L CK D+E + + T I L L +
Sbjct: 118 CFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKS 177
Query: 179 EGSNSGK 185
+NS K
Sbjct: 178 AYNNSPK 184
>gi|170034020|ref|XP_001844873.1| arrowhead [Culex quinquefasciatus]
gi|167875281|gb|EDS38664.1| arrowhead [Culex quinquefasciatus]
Length = 304
Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 75/148 (50%), Gaps = 29/148 (19%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K+ L C CG I DQY+L V WH+ACLRC CH LD+ +CF
Sbjct: 4 KKELRSCTACGEPISDQYLLDVG-GCSWHSACLRCCICHTPLDQQPSCF----------- 51
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
+RD + YCK DY FG KC +C+ + D+V RA+ I+H+
Sbjct: 52 -----------------LRDRQIYCKADYASTFGAKCARCSRSISASDWVRRARKMIFHL 94
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCK 148
CF C CG+QL G++FAL +D + CK
Sbjct: 95 ACFACDSCGRQLSTGEQFALADDKVLCK 122
>gi|167859587|gb|ACA04748.1| Lim3 [Amphimedon queenslandica]
Length = 338
Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 82/174 (47%), Gaps = 32/174 (18%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ C GC +I D++ILRV D WHA CLRC++C C + D
Sbjct: 90 VPFCAGCNTRIFDRFILRVQ-DKSWHAKCLRCSDCQ--------CQLSDK---------- 130
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
C+ R G+ YCK D+ + FGT+C C V RA+ +YH+QCF
Sbjct: 131 ------------CYSRSGQVYCKDDFSKRFGTRCAGCQQPIPPTQVVRRAQENVYHLQCF 178
Query: 124 CCVVCGKQLVPGDEFALRED-GLFCKDDHEGMDKSSNGENNNNNTNINNNLHNL 176
C +C +QL GDEF L +D L CK D+E ++G T I+ +L
Sbjct: 179 ACFICQRQLSTGDEFYLMDDRKLVCKADYEAAKARADGSQKRPRTTISQKQLDL 232
>gi|340376253|ref|XP_003386648.1| PREDICTED: LIM/homeobox protein Lhx3-like [Amphimedon
queenslandica]
Length = 338
Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
C GC +I D++ILRV D WHA CLRC++C C + D
Sbjct: 92 FCAGCNTRIFDRFILRVQ-DKSWHAKCLRCSDCQ--------CQLSDK------------ 130
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
C+ R G+ YCK D+ + FGT+C C V RA+ +YH+QCF C
Sbjct: 131 ----------CYSRSGQVYCKDDFSKRFGTRCAGCQQPIPPTQVVRRAQENVYHLQCFAC 180
Query: 126 VVCGKQLVPGDEFALRED-GLFCKDDHEGMDKSSNGENNNNNTNINNNLHNL 176
+C +QL GDEF L +D L CK D+E ++G T I+ +L
Sbjct: 181 FICQRQLSTGDEFYLMDDRKLVCKADYEAAKARADGSQKRPRTTISQKQLDL 232
>gi|449478428|ref|XP_002187534.2| PREDICTED: LIM/homeobox protein Lhx3 [Taeniopygia guttata]
Length = 665
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 65/185 (35%), Positives = 85/185 (45%), Gaps = 34/185 (18%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ LC GC I D++IL+V D WH+ CL+C++C L E CF R YCK D+
Sbjct: 25 IPLCAGCNQHIVDRFILKVL-DRHWHSKCLKCSDCQTQLAEK--CFSRGDGVYCKEDF-- 79
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F R FGTKC C+ V RA++ +YH+ CF
Sbjct: 80 -------------FKR-------------FGTKCAACHQGIPPTQVVRRAQDFVYHLHCF 113
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHE-GMDKSSNGENNNNNTNIN-NNLHNLNNEG 180
C+VC +QL GDEF L ED L CK D+E + + T I L L N
Sbjct: 114 ACIVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAESTAKRPRTTITAKQLETLKNAY 173
Query: 181 SNSGK 185
+NS K
Sbjct: 174 NNSPK 178
>gi|410979495|ref|XP_003996119.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx3 [Felis
catus]
Length = 309
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 88/187 (47%), Gaps = 36/187 (19%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
R + LC GC I D++IL+ D WH+ CLRC++CH L E C
Sbjct: 29 REIPLCAGCDQHILDRFILKAL-DRHWHSKCLRCSDCHAPLAERC--------------- 72
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
F R YCK D+ + FGTKC C L V RA++ +YH+
Sbjct: 73 ---------------FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLH 117
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGMDKSSN---GENNNNNTNINNNLHNLN 177
CF CVVC +QL GDEF+ ED L CK D+E + G++++ + + + ++
Sbjct: 118 CFACVVCKRQLATGDEFSFMEDSRLVCKADYETAKQRGQWEEGQDSDADVSFTDE-PSMA 176
Query: 178 NEGSNSG 184
G SG
Sbjct: 177 EMGPASG 183
>gi|242023961|ref|XP_002432399.1| LIM/homeobox protein Lhx2, putative [Pediculus humanus corporis]
gi|212517822|gb|EEB19661.1| LIM/homeobox protein Lhx2, putative [Pediculus humanus corporis]
Length = 383
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 72/149 (48%), Gaps = 30/149 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
+ C GCGG+I D+Y L +A D +WH+ CL+C EC
Sbjct: 29 TACAGCGGRILDRYYL-LAVDRQWHSPCLKCTEC-------------------------- 61
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTK-CEKCNLNFKREDFVMRAKNKIYHVQCF 123
LD TCF RDG YCK DY RLF K C +C + VMRAK+ ++H+ CF
Sbjct: 62 --KSPLDTELTCFARDGNIYCKEDYYRLFAIKRCSRCQTGISASELVMRAKDMVFHINCF 119
Query: 124 CCVVCGKQLVPGDEFALREDGLFCKDDHE 152
C CG L GD F +R ++C +E
Sbjct: 120 TCTSCGIPLSKGDHFGMRNGLVYCHPHYE 148
>gi|114627514|ref|XP_001171072.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Pan troglodytes]
Length = 397
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 85/187 (45%), Gaps = 34/187 (18%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
R + LC GC I D++IL+ A D WH+ CL+C++CH L E C
Sbjct: 26 REIPLCAGCDQHILDRFILK-ALDRHWHSKCLKCSDCHTPLAERC--------------- 69
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
F R YCK D+ R FGTKC C L V RA++ +YH+
Sbjct: 70 ---------------FSRGESVYCKDDFFRRFGTKCAACQLGIPPTQVVRRAQDFVYHLH 114
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHE-GMDKSSNGENNNNNTNIN-NNLHNLNN 178
CF CVVC +QL GDEF L ED L CK D+E + + T I L L +
Sbjct: 115 CFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKS 174
Query: 179 EGSNSGK 185
+ S K
Sbjct: 175 AYNTSPK 181
>gi|259013283|ref|NP_001158443.1| lim homeobox 2/9 protein [Saccoglossus kowalevskii]
gi|197320559|gb|ACH68441.1| lim homeobox 2/9 protein [Saccoglossus kowalevskii]
Length = 402
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 77/150 (51%), Gaps = 30/150 (20%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C GCGG+I D+Y L +A D +WH CL+C C C +R
Sbjct: 58 ICAGCGGRILDRYYL-LAVDKQWHMQCLKC----------CECKLR-------------- 92
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTK-CEKCNLNFKREDFVMRAKNKIYHVQCFC 124
LD TCF +DG YCK DY R F K C +C+L + VMRA++ +YH+ CF
Sbjct: 93 ----LDSELTCFAKDGSIYCKDDYYRRFSVKRCARCHLGISASEMVMRARDLVYHLSCFT 148
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
C C K L GD F +++ ++C+ +E M
Sbjct: 149 CATCNKALATGDHFGMKDAMVYCRSHYEAM 178
>gi|395824959|ref|XP_003785717.1| PREDICTED: LIM/homeobox protein Lhx4 [Otolemur garnettii]
Length = 390
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 87/188 (46%), Gaps = 35/188 (18%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+++ C GC I D++IL+V D WH++CL+CA+C L + CF R G Y
Sbjct: 25 QQIPQCAGCNQHILDKFILKVL-DRHWHSSCLKCADCQMQLADR--CFSRAGSVY----- 76
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
CK D+ + FGTKC C V +A++ +YH+
Sbjct: 77 -----------------------CKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLH 113
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGM---DKSSNGENNNNNTNINNNLHNLN 177
CF CV+C +QL GDEF L EDG L CK+D+E D S G T L L
Sbjct: 114 CFACVICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLK 173
Query: 178 NEGSNSGK 185
N NS K
Sbjct: 174 NAYKNSPK 181
>gi|403266388|ref|XP_003925368.1| PREDICTED: LIM/homeobox protein Lhx4 [Saimiri boliviensis
boliviensis]
Length = 390
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 87/188 (46%), Gaps = 35/188 (18%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+++ C GC I D++IL+V D WH++CL+CA+C L + CF R G Y
Sbjct: 25 QQIPQCAGCNQHILDKFILKVL-DRHWHSSCLKCADCQMQLADR--CFSRAGSVY----- 76
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
CK D+ + FGTKC C V +A++ +YH+
Sbjct: 77 -----------------------CKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLH 113
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGM---DKSSNGENNNNNTNINNNLHNLN 177
CF C++C +QL GDEF L EDG L CK+D+E D S G T L L
Sbjct: 114 CFACIICTRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLK 173
Query: 178 NEGSNSGK 185
N NS K
Sbjct: 174 NAYKNSPK 181
>gi|296229653|ref|XP_002760359.1| PREDICTED: LIM/homeobox protein Lhx4 [Callithrix jacchus]
Length = 390
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 87/188 (46%), Gaps = 35/188 (18%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+++ C GC I D++IL+V D WH++CL+CA+C L + CF R G Y
Sbjct: 25 QQIPQCAGCNQHILDKFILKVL-DRHWHSSCLKCADCQMQLADR--CFSRAGSVY----- 76
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
CK D+ + FGTKC C V +A++ +YH+
Sbjct: 77 -----------------------CKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLH 113
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGM---DKSSNGENNNNNTNINNNLHNLN 177
CF C++C +QL GDEF L EDG L CK+D+E D S G T L L
Sbjct: 114 CFACIICTRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLK 173
Query: 178 NEGSNSGK 185
N NS K
Sbjct: 174 NAYKNSPK 181
>gi|301770851|ref|XP_002920842.1| PREDICTED: LIM/homeobox protein Lhx4-like [Ailuropoda melanoleuca]
Length = 390
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 87/188 (46%), Gaps = 35/188 (18%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+++ C GC I D++IL+V D WH++CL+CA+C L + CF R G Y
Sbjct: 25 QQIPQCAGCNQHILDKFILKVL-DRHWHSSCLKCADCQMQLADR--CFSRAGSVY----- 76
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
CK D+ + FGTKC C V +A++ +YH+
Sbjct: 77 -----------------------CKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLH 113
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGM---DKSSNGENNNNNTNINNNLHNLN 177
CF CV+C +QL GDEF L EDG L CK+D+E D S G T L L
Sbjct: 114 CFSCVICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLK 173
Query: 178 NEGSNSGK 185
N NS K
Sbjct: 174 NAYKNSPK 181
>gi|397492166|ref|XP_003816999.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Pan paniscus]
Length = 401
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 75/152 (49%), Gaps = 32/152 (21%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
R + LC GC I D++IL+ A D WH+ CL+C++CH L E C
Sbjct: 26 REIPLCAGCDQHILDRFILK-ALDRHWHSKCLKCSDCHTPLAERC--------------- 69
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
F R YCK D+ R FGTKC C L V RA++ +YH+
Sbjct: 70 ---------------FSRGESVYCKDDFFRRFGTKCAACQLGIPPTQVVRRAQDFVYHLH 114
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHE 152
CF CVVC +QL GDEF L ED L CK D+E
Sbjct: 115 CFACVVCKRQLATGDEFYLMEDSRLVCKADYE 146
>gi|426239972|ref|XP_004013890.1| PREDICTED: LIM/homeobox protein Lhx4 [Ovis aries]
Length = 390
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 87/188 (46%), Gaps = 35/188 (18%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+++ C GC I D++IL+V D WH++CL+CA+C L + CF R G Y
Sbjct: 25 QQIPQCAGCNQHILDKFILKVL-DRHWHSSCLKCADCQMQLADR--CFSRAGSVY----- 76
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
CK D+ + FGTKC C V +A++ +YH+
Sbjct: 77 -----------------------CKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLH 113
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGM---DKSSNGENNNNNTNINNNLHNLN 177
CF C++C +QL GDEF L EDG L CK+D+E D S G T L L
Sbjct: 114 CFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLK 173
Query: 178 NEGSNSGK 185
N NS K
Sbjct: 174 NAYKNSPK 181
>gi|119611484|gb|EAW91078.1| LIM homeobox 4 [Homo sapiens]
Length = 390
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 87/188 (46%), Gaps = 35/188 (18%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+++ C GC I D++IL+V D WH++CL+CA+C L + CF R G Y
Sbjct: 25 QQIPQCAGCNQHILDKFILKVL-DRHWHSSCLKCADCQMQLADR--CFSRAGSVY----- 76
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
CK D+ + FGTKC C V +A++ +YH+
Sbjct: 77 -----------------------CKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLH 113
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGM---DKSSNGENNNNNTNINNNLHNLN 177
CF C++C +QL GDEF L EDG L CK+D+E D S G T L L
Sbjct: 114 CFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLK 173
Query: 178 NEGSNSGK 185
N NS K
Sbjct: 174 NAYKNSPK 181
>gi|449266486|gb|EMC77539.1| LIM/homeobox protein Lhx4, partial [Columba livia]
Length = 236
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 85/186 (45%), Gaps = 35/186 (18%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ C GC I D++IL+V D WH++CL+CA+C L + CF R G
Sbjct: 2 IPQCAGCNQHILDKFILKVL-DRHWHSSCLKCADCQMQLADR--CFSRAGSV-------- 50
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
YCK D+ + FGTKC C V +A++ +YH+ CF
Sbjct: 51 --------------------YCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCF 90
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHEGM---DKSSNGENNNNNTNINNNLHNLNNE 179
C++C +QL GDEF L EDG L CK+D+E D S G T L L N
Sbjct: 91 ACIICSRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLKNA 150
Query: 180 GSNSGK 185
NS K
Sbjct: 151 YKNSPK 156
>gi|402857943|ref|XP_003893495.1| PREDICTED: LIM/homeobox protein Lhx4 [Papio anubis]
gi|355558975|gb|EHH15755.1| hypothetical protein EGK_01889 [Macaca mulatta]
Length = 390
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 87/188 (46%), Gaps = 35/188 (18%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+++ C GC I D++IL+V D WH++CL+CA+C L + CF R G Y
Sbjct: 25 QQIPQCAGCNQHILDKFILKVL-DRHWHSSCLKCADCQMQLADR--CFSRAGSVY----- 76
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
CK D+ + FGTKC C V +A++ +YH+
Sbjct: 77 -----------------------CKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLH 113
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGM---DKSSNGENNNNNTNINNNLHNLN 177
CF C++C +QL GDEF L EDG L CK+D+E D S G T L L
Sbjct: 114 CFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLK 173
Query: 178 NEGSNSGK 185
N NS K
Sbjct: 174 NAYKNSPK 181
>gi|73960401|ref|XP_547420.2| PREDICTED: LIM/homeobox protein Lhx4 isoform 1 [Canis lupus
familiaris]
Length = 390
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 87/188 (46%), Gaps = 35/188 (18%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+++ C GC I D++IL+V D WH++CL+CA+C L + CF R G Y
Sbjct: 25 QQIPQCAGCNQHILDKFILKVL-DRHWHSSCLKCADCQMQLADR--CFSRAGSVY----- 76
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
CK D+ + FGTKC C V +A++ +YH+
Sbjct: 77 -----------------------CKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLH 113
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGM---DKSSNGENNNNNTNINNNLHNLN 177
CF C++C +QL GDEF L EDG L CK+D+E D S G T L L
Sbjct: 114 CFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLK 173
Query: 178 NEGSNSGK 185
N NS K
Sbjct: 174 NAYKNSPK 181
>gi|84490413|ref|NP_001033709.1| LIM/homeobox protein Lhx3 [Bos taurus]
gi|62952823|gb|AAY23167.1| LIM homeodomain 3 protein b isoform [Bos taurus]
gi|62952825|gb|AAY23168.1| LIM homeodomain 3 protein b isoform [Bos taurus]
gi|296482071|tpg|DAA24186.1| TPA: LIM homeobox protein 3 [Bos taurus]
Length = 403
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 86/188 (45%), Gaps = 34/188 (18%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
+R + LC GC I D++IL+ A D WH+ CL+C++CH L E C
Sbjct: 30 RREIPLCAGCDQHILDRFILK-ALDRHWHSKCLKCSDCHAPLAERC-------------- 74
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
F R YCK D+ + FGTKC C L V RA++ +YH+
Sbjct: 75 ----------------FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHL 118
Query: 121 QCFCCVVCGKQLVPGDEFALREDG-LFCKDDHE-GMDKSSNGENNNNNTNIN-NNLHNLN 177
CF CVVC +QL GDEF L ED L CK D+E + + T I L L
Sbjct: 119 HCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLK 178
Query: 178 NEGSNSGK 185
+ + S K
Sbjct: 179 SAYNTSPK 186
>gi|344278250|ref|XP_003410909.1| PREDICTED: LIM/homeobox protein Lhx4-like [Loxodonta africana]
Length = 390
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 87/188 (46%), Gaps = 35/188 (18%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+++ C GC I D++IL+V D WH++CL+CA+C L + CF R G Y
Sbjct: 25 QQIPQCAGCNQHILDKFILKVL-DRHWHSSCLKCADCQMQLADR--CFSRAGSVY----- 76
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
CK D+ + FGTKC C V +A++ +YH+
Sbjct: 77 -----------------------CKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLH 113
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGM---DKSSNGENNNNNTNINNNLHNLN 177
CF C++C +QL GDEF L EDG L CK+D+E D S G T L L
Sbjct: 114 CFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLK 173
Query: 178 NEGSNSGK 185
N NS K
Sbjct: 174 NAYKNSPK 181
>gi|426332930|ref|XP_004028045.1| PREDICTED: LIM/homeobox protein Lhx4 [Gorilla gorilla gorilla]
Length = 390
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 87/188 (46%), Gaps = 35/188 (18%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+++ C GC I D++IL+V D WH++CL+CA+C L + CF R G Y
Sbjct: 25 QQIPQCAGCNQHILDKFILKVL-DRHWHSSCLKCADCQMQLADR--CFSRAGSVY----- 76
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
CK D+ + FGTKC C V +A++ +YH+
Sbjct: 77 -----------------------CKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLH 113
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGM---DKSSNGENNNNNTNINNNLHNLN 177
CF C++C +QL GDEF L EDG L CK+D+E D S G T L L
Sbjct: 114 CFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLK 173
Query: 178 NEGSNSGK 185
N NS K
Sbjct: 174 NAYKNSPK 181
>gi|15375314|ref|NP_203129.1| LIM/homeobox protein Lhx4 [Homo sapiens]
gi|209572644|sp|Q969G2.2|LHX4_HUMAN RecName: Full=LIM/homeobox protein Lhx4; Short=LIM homeobox protein
4
gi|14599448|gb|AAK70923.1|AF179849_1 LIM homeobox protein 4 [Homo sapiens]
gi|22094433|gb|AAM91896.1|AF405430_1 LIM homeobox protein 4 [Homo sapiens]
gi|15079940|gb|AAH11759.1| LIM homeobox 4 [Homo sapiens]
gi|123988108|gb|ABM83830.1| LIM homeobox 4 [synthetic construct]
gi|123999145|gb|ABM87154.1| LIM homeobox 4 [synthetic construct]
gi|261861646|dbj|BAI47345.1| LIM homeobox 4 [synthetic construct]
Length = 390
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 87/188 (46%), Gaps = 35/188 (18%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+++ C GC I D++IL+V D WH++CL+CA+C L + CF R G Y
Sbjct: 25 QQIPQCAGCNQHILDKFILKVL-DRHWHSSCLKCADCQMQLADR--CFSRAGSVY----- 76
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
CK D+ + FGTKC C V +A++ +YH+
Sbjct: 77 -----------------------CKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLH 113
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGM---DKSSNGENNNNNTNINNNLHNLN 177
CF C++C +QL GDEF L EDG L CK+D+E D S G T L L
Sbjct: 114 CFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLK 173
Query: 178 NEGSNSGK 185
N NS K
Sbjct: 174 NAYKNSPK 181
>gi|410986072|ref|XP_003999336.1| PREDICTED: LIM/homeobox protein Lhx4 [Felis catus]
Length = 390
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 87/188 (46%), Gaps = 35/188 (18%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+++ C GC I D++IL+V D WH++CL+CA+C L + CF R G Y
Sbjct: 25 QQIPQCAGCNQHILDKFILKVL-DRHWHSSCLKCADCQMQLADR--CFSRAGSVY----- 76
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
CK D+ + FGTKC C V +A++ +YH+
Sbjct: 77 -----------------------CKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLH 113
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGM---DKSSNGENNNNNTNINNNLHNLN 177
CF C++C +QL GDEF L EDG L CK+D+E D S G T L L
Sbjct: 114 CFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLK 173
Query: 178 NEGSNSGK 185
N NS K
Sbjct: 174 NAYKNSPK 181
>gi|300795912|ref|NP_001179714.1| LIM/homeobox protein Lhx4 [Bos taurus]
gi|296479119|tpg|DAA21234.1| TPA: LIM homeobox 4 [Bos taurus]
gi|440901216|gb|ELR52198.1| LIM/homeobox protein Lhx4 [Bos grunniens mutus]
Length = 390
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 87/188 (46%), Gaps = 35/188 (18%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+++ C GC I D++IL+V D WH++CL+CA+C L + CF R G Y
Sbjct: 25 QQIPQCAGCNQHILDKFILKVL-DRHWHSSCLKCADCQMQLADR--CFSRAGSVY----- 76
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
CK D+ + FGTKC C V +A++ +YH+
Sbjct: 77 -----------------------CKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLH 113
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGM---DKSSNGENNNNNTNINNNLHNLN 177
CF C++C +QL GDEF L EDG L CK+D+E D S G T L L
Sbjct: 114 CFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLK 173
Query: 178 NEGSNSGK 185
N NS K
Sbjct: 174 NAYKNSPK 181
>gi|29437129|gb|AAH49834.1| Lhx4 protein [Mus musculus]
Length = 390
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 87/188 (46%), Gaps = 35/188 (18%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+++ C GC I D++IL+V D WH++CL+CA+C L + CF R G Y
Sbjct: 25 QQIPQCAGCNQHILDKFILKVL-DRHWHSSCLKCADCQMQLADR--CFSRAGSVY----- 76
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
CK D+ + FGTKC C V +A++ +YH+
Sbjct: 77 -----------------------CKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLH 113
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGM---DKSSNGENNNNNTNINNNLHNLN 177
CF C++C +QL GDEF L EDG L CK+D+E D S G T L L
Sbjct: 114 CFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLK 173
Query: 178 NEGSNSGK 185
N NS K
Sbjct: 174 NAYKNSPK 181
>gi|432115998|gb|ELK37137.1| LIM/homeobox protein Lhx4 [Myotis davidii]
Length = 389
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 87/188 (46%), Gaps = 35/188 (18%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+++ C GC I D++IL+V D WH++CL+CA+C L + CF R G Y
Sbjct: 24 QQIPQCAGCNQHILDKFILKVL-DRHWHSSCLKCADCQMQLADR--CFSRAGSVY----- 75
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
CK D+ + FGTKC C V +A++ +YH+
Sbjct: 76 -----------------------CKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLH 112
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGM---DKSSNGENNNNNTNINNNLHNLN 177
CF C++C +QL GDEF L EDG L CK+D+E D S G T L L
Sbjct: 113 CFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLK 172
Query: 178 NEGSNSGK 185
N NS K
Sbjct: 173 NAYKNSPK 180
>gi|18026224|gb|AAL07260.1| LIM homeodomain protein [Homo sapiens]
Length = 390
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 87/188 (46%), Gaps = 35/188 (18%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+++ C GC I D++IL+V D WH++CL+CA+C L + CF R G Y
Sbjct: 25 QQIPQCAGCNQHILDKFILKVL-DRHWHSSCLKCADCQMQLADR--CFSRAGSVY----- 76
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
CK D+ + FGTKC C V +A++ +YH+
Sbjct: 77 -----------------------CKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLH 113
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGM---DKSSNGENNNNNTNINNNLHNLN 177
CF C++C +QL GDEF L EDG L CK+D+E D S G T L L
Sbjct: 114 CFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLK 173
Query: 178 NEGSNSGK 185
N NS K
Sbjct: 174 NAYKNSPK 181
>gi|194226030|ref|XP_001918019.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx3 [Equus
caballus]
Length = 401
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 84/187 (44%), Gaps = 34/187 (18%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
R + LC GC I D++IL+ D WH+ CL+C++CH L E C
Sbjct: 29 REIPLCAGCDQHILDRFILKAL-DRHWHSKCLKCSDCHTPLAERC--------------- 72
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
F R YCK D+ + FGTKC C L V RA++ +YH+
Sbjct: 73 ---------------FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLH 117
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHE-GMDKSSNGENNNNNTNIN-NNLHNLNN 178
CF CVVC +QL GDEF L ED L CK D+E + + T I L L +
Sbjct: 118 CFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKS 177
Query: 179 EGSNSGK 185
+ S K
Sbjct: 178 AYNTSPK 184
>gi|190684642|ref|NP_034842.2| LIM/homeobox protein Lhx4 [Mus musculus]
gi|209572773|sp|P53776.4|LHX4_MOUSE RecName: Full=LIM/homeobox protein Lhx4; Short=LIM homeobox protein
4
gi|148707456|gb|EDL39403.1| LIM homeobox protein 4, isoform CRA_b [Mus musculus]
Length = 390
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 87/188 (46%), Gaps = 35/188 (18%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+++ C GC I D++IL+V D WH++CL+CA+C L + CF R G Y
Sbjct: 25 QQIPQCAGCNQHILDKFILKVL-DRHWHSSCLKCADCQMQLADR--CFSRAGSVY----- 76
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
CK D+ + FGTKC C V +A++ +YH+
Sbjct: 77 -----------------------CKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLH 113
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGM---DKSSNGENNNNNTNINNNLHNLN 177
CF C++C +QL GDEF L EDG L CK+D+E D S G T L L
Sbjct: 114 CFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLK 173
Query: 178 NEGSNSGK 185
N NS K
Sbjct: 174 NAYKNSPK 181
>gi|335295820|ref|XP_003357609.1| PREDICTED: LIM/homeobox protein Lhx4-like [Sus scrofa]
Length = 390
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 87/188 (46%), Gaps = 35/188 (18%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+++ C GC I D++IL+V D WH++CL+CA+C L + CF R G Y
Sbjct: 25 QQIPQCAGCNQHILDKFILKVL-DRHWHSSCLKCADCQMQLADR--CFSRAGSVY----- 76
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
CK D+ + FGTKC C V +A++ +YH+
Sbjct: 77 -----------------------CKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLP 113
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGM---DKSSNGENNNNNTNINNNLHNLN 177
CF C++C +QL GDEF L EDG L CK+D+E D S G T L L
Sbjct: 114 CFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLK 173
Query: 178 NEGSNSGK 185
N NS K
Sbjct: 174 NAYKNSPK 181
>gi|194210370|ref|XP_001914860.1| PREDICTED: LIM/homeobox protein Lhx4-like [Equus caballus]
Length = 390
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 87/188 (46%), Gaps = 35/188 (18%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+++ C GC I D++IL+V D WH++CL+CA+C L + CF R G Y
Sbjct: 25 QQIPQCAGCNQHILDKFILKVL-DRHWHSSCLKCADCQMQLADR--CFSRAGSVY----- 76
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
CK D+ + FGTKC C V +A++ +YH+
Sbjct: 77 -----------------------CKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLH 113
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGM---DKSSNGENNNNNTNINNNLHNLN 177
CF C++C +QL GDEF L EDG L CK+D+E D S G T L L
Sbjct: 114 CFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLK 173
Query: 178 NEGSNSGK 185
N NS K
Sbjct: 174 NAYKNSPK 181
>gi|297662584|ref|XP_002809779.1| PREDICTED: LIM/homeobox protein Lhx4 [Pongo abelii]
Length = 390
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 87/188 (46%), Gaps = 35/188 (18%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+++ C GC I D++IL+V D WH++CL+CA+C L + CF R G Y
Sbjct: 25 QQIPQCAGCNQHILDKFILKVL-DRHWHSSCLKCADCQMQLADR--CFSRAGSVY----- 76
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
CK D+ + FGTKC C V +A++ +YH+
Sbjct: 77 -----------------------CKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLH 113
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGM---DKSSNGENNNNNTNINNNLHNLN 177
CF C++C +QL GDEF L EDG L CK+D+E D S G T L L
Sbjct: 114 CFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLK 173
Query: 178 NEGSNSGK 185
N NS K
Sbjct: 174 NAYKNSPK 181
>gi|403301480|ref|XP_003941417.1| PREDICTED: LIM/homeobox protein Lhx3 [Saimiri boliviensis
boliviensis]
Length = 397
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 85/187 (45%), Gaps = 34/187 (18%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
R + LC GC I D++IL+ A D WH+ CL+C++CH L E C
Sbjct: 26 REIPLCAGCDQHILDRFILK-ALDRHWHSKCLKCSDCHTPLAERC--------------- 69
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
F R YCK D+ + FGTKC C L V RA++ +YH+
Sbjct: 70 ---------------FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLH 114
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHE-GMDKSSNGENNNNNTNIN-NNLHNLNN 178
CF CVVC +QL GDEF L ED L CK D+E + + T I L L +
Sbjct: 115 CFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKS 174
Query: 179 EGSNSGK 185
+ S K
Sbjct: 175 AYNTSPK 181
>gi|291397314|ref|XP_002715058.1| PREDICTED: LIM homeobox protein 4 [Oryctolagus cuniculus]
Length = 390
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 87/188 (46%), Gaps = 35/188 (18%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+++ C GC I D++IL+V D WH++CL+CA+C L + CF R G Y
Sbjct: 25 QQIPQCAGCNQHILDKFILKVL-DRHWHSSCLKCADCQMQLADR--CFSRAGSFY----- 76
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
CK D+ + FGTKC C V +A++ +YH+
Sbjct: 77 -----------------------CKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLH 113
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGM---DKSSNGENNNNNTNINNNLHNLN 177
CF C++C +QL GDEF L EDG L CK+D+E D S G T L L
Sbjct: 114 CFACIICSRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLK 173
Query: 178 NEGSNSGK 185
N NS K
Sbjct: 174 NAYKNSPK 181
>gi|2149584|gb|AAC53336.1| LIM-homeobox protein [Mus musculus]
Length = 190
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 84/183 (45%), Gaps = 35/183 (19%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D++IL+V D WH++CL+CA+C L + CF R G
Sbjct: 1 CAGCNQHILDKFILKVL-DRHWHSSCLKCADCQMQLADR--CFSRAGSV----------- 46
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
YCK D+ + FGTKC C V +A++ +YH+ CF C+
Sbjct: 47 -----------------YCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACI 89
Query: 127 VCGKQLVPGDEFALREDG-LFCKDDHEGM---DKSSNGENNNNNTNINNNLHNLNNEGSN 182
+C +QL GDEF L EDG L CK+D+E D S G T L L N N
Sbjct: 90 ICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLKNAYKN 149
Query: 183 SGK 185
S K
Sbjct: 150 SPK 152
>gi|296191169|ref|XP_002743508.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Callithrix jacchus]
Length = 397
Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 85/187 (45%), Gaps = 34/187 (18%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
R + LC GC I D++IL+ A D WH+ CL+C++CH L E C
Sbjct: 26 REIPLCAGCDQHILDRFILK-ALDRHWHSKCLKCSDCHTPLAERC--------------- 69
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
F R YCK D+ + FGTKC C L V RA++ +YH+
Sbjct: 70 ---------------FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLH 114
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHE-GMDKSSNGENNNNNTNIN-NNLHNLNN 178
CF CVVC +QL GDEF L ED L CK D+E + + T I L L +
Sbjct: 115 CFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKS 174
Query: 179 EGSNSGK 185
+ S K
Sbjct: 175 AYNTSPK 181
>gi|354475897|ref|XP_003500163.1| PREDICTED: LIM/homeobox protein Lhx4 [Cricetulus griseus]
Length = 390
Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 88/189 (46%), Gaps = 37/189 (19%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECH-QFLDENCTCFVRDGKTYCKRD 60
+++ C GC I D++IL+V D WH++CL+CA+C Q +D CF R G Y
Sbjct: 25 QQIPQCAGCNQHILDKFILKVL-DRHWHSSCLKCADCQMQLVDR---CFSRAGSVY---- 76
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
CK D+ + FGTKC C V +A++ +YH+
Sbjct: 77 ------------------------CKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHL 112
Query: 121 QCFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGM---DKSSNGENNNNNTNINNNLHNL 176
CF C++C +QL GDEF L EDG L CK+D+E D S G T L L
Sbjct: 113 HCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETL 172
Query: 177 NNEGSNSGK 185
N NS K
Sbjct: 173 KNAYKNSPK 181
>gi|351699208|gb|EHB02127.1| LIM/homeobox protein Lhx4 [Heterocephalus glaber]
Length = 390
Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 87/188 (46%), Gaps = 35/188 (18%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+++ C GC I D++IL+V D WH++CL+CA+C L + CF R G Y
Sbjct: 25 QQIPQCAGCNQHILDKFILKVL-DRHWHSSCLKCADCQMQLADR--CFSRAGSVY----- 76
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
CK D+ + FGTKC C V +A++ +YH+
Sbjct: 77 -----------------------CKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLH 113
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGM---DKSSNGENNNNNTNINNNLHNLN 177
CF C++C +QL GDEF L EDG L CK+D+E D S G T L L
Sbjct: 114 CFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLK 173
Query: 178 NEGSNSGK 185
N NS K
Sbjct: 174 NAYKNSPK 181
>gi|348504222|ref|XP_003439661.1| PREDICTED: LIM homeobox transcription factor 1-beta-like
[Oreochromis niloticus]
Length = 456
Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 75/151 (49%), Gaps = 31/151 (20%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
R+ ++C GC I D++++RV WH CL+CA C Q L +
Sbjct: 27 RQQAVCEGCAQIISDRFLMRVN-GASWHQKCLQCAACQQPLTD----------------- 68
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
TC+ RD K YCK DY +LF +C C +FVMRA + +YH+
Sbjct: 69 -------------TCYFRDTKPYCKSDYQQLFAVECSNCLGKIAPTEFVMRALDSVYHLS 115
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHE 152
CFCC VC QL GDEF L+E L CK D+E
Sbjct: 116 CFCCCVCQHQLCKGDEFVLKEGQLLCKTDYE 146
>gi|402896085|ref|XP_003911138.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Papio anubis]
Length = 397
Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 85/187 (45%), Gaps = 34/187 (18%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
R + LC GC I D++IL+ A D WH+ CL+C++CH L E C
Sbjct: 26 REIPLCAGCDQHILDRFILK-ALDRHWHSKCLKCSDCHTPLAERC--------------- 69
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
F R YCK D+ + FGTKC C L V RA++ +YH+
Sbjct: 70 ---------------FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLH 114
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHE-GMDKSSNGENNNNNTNIN-NNLHNLNN 178
CF CVVC +QL GDEF L ED L CK D+E + + T I L L +
Sbjct: 115 CFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKS 174
Query: 179 EGSNSGK 185
+ S K
Sbjct: 175 AYNTSPK 181
>gi|345487077|ref|XP_001599660.2| PREDICTED: hypothetical protein LOC100114734 [Nasonia vitripennis]
Length = 644
Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats.
Identities = 52/149 (34%), Positives = 75/149 (50%), Gaps = 31/149 (20%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C GCG +I D++ L+ A D WHA+CL+C+ C Q LD TC
Sbjct: 238 VCAGCGLRISDRFYLQ-AVDRRWHASCLQCSHCRQGLDGEVTC----------------- 279
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGT--KCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F R+G YCK+DY R+FG+ +C +C + VMRA+ ++HV+CF
Sbjct: 280 -----------FSREGNIYCKKDYYRMFGSMKRCARCQAAILASELVMRARELVFHVRCF 328
Query: 124 CCVVCGKQLVPGDEFALREDGLFCKDDHE 152
C C L GD F +RE + C+ +E
Sbjct: 329 SCAACSVPLTKGDHFGMREGAVLCRLHYE 357
>gi|348578364|ref|XP_003474953.1| PREDICTED: LIM/homeobox protein Lhx4 [Cavia porcellus]
Length = 390
Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 87/188 (46%), Gaps = 35/188 (18%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+++ C GC I D++IL+V D WH++CL+CA+C L + CF R G Y
Sbjct: 25 QQIPQCAGCNQHILDKFILKVL-DRHWHSSCLKCADCQMQLADR--CFSRAGSVY----- 76
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
CK D+ + FGTKC C V +A++ +YH+
Sbjct: 77 -----------------------CKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLH 113
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGM---DKSSNGENNNNNTNINNNLHNLN 177
CF C++C +QL GDEF L EDG L CK+D+E D S G T L L
Sbjct: 114 CFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLK 173
Query: 178 NEGSNSGK 185
N NS K
Sbjct: 174 NAYKNSPK 181
>gi|4809173|gb|AAD30125.1|AF135415_1 LIM-homeobox protein [Mus musculus]
Length = 367
Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 87/188 (46%), Gaps = 35/188 (18%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+++ C GC I D++IL+V D WH++CL+CA+C L + CF R G Y
Sbjct: 2 QQIPQCAGCNQHILDKFILKVL-DRHWHSSCLKCADCQMQLADR--CFSRAGSVY----- 53
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
CK D+ + FGTKC C V +A++ +YH+
Sbjct: 54 -----------------------CKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLH 90
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGM---DKSSNGENNNNNTNINNNLHNLN 177
CF C++C +QL GDEF L EDG L CK+D+E D S G T L L
Sbjct: 91 CFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLK 150
Query: 178 NEGSNSGK 185
N NS K
Sbjct: 151 NAYKNSPK 158
>gi|348574776|ref|XP_003473166.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx3-like
[Cavia porcellus]
Length = 403
Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 83/185 (44%), Gaps = 34/185 (18%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ LC GC I D++IL+ D WH+ CLRC++CH L E C
Sbjct: 33 IPLCAGCDQHILDRFILKAL-DRHWHSKCLRCSDCHTPLAERC----------------- 74
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F R YCK D+ + FGTKC C L V RA++ +YH+ CF
Sbjct: 75 -------------FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCF 121
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHEGM-DKSSNGENNNNNTNIN-NNLHNLNNEG 180
CVVC +QL GDEF L ED L CK D+E + + T I L L +
Sbjct: 122 ACVVCKRQLATGDEFYLMEDSRLVCKADYEAAKQREAEATAKRPRTTITAKQLETLKSAY 181
Query: 181 SNSGK 185
+ S K
Sbjct: 182 NTSPK 186
>gi|308235933|ref|NP_001184116.1| LIM/homeobox protein Lhx3 [Canis lupus familiaris]
gi|300837161|gb|ADK38612.1| LIM homeodomain protein 3 isoform LHX3b [Canis lupus familiaris]
Length = 403
Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 84/188 (44%), Gaps = 34/188 (18%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
+R + LC GC I D++IL+ D WH+ CL+C +CH L E C
Sbjct: 30 RREIPLCAGCDQHILDRFILKAL-DRHWHSKCLKCTDCHTPLAERC-------------- 74
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
F R YCK D+ + FGTKC C L V RA++ +YH+
Sbjct: 75 ----------------FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHL 118
Query: 121 QCFCCVVCGKQLVPGDEFALREDG-LFCKDDHE-GMDKSSNGENNNNNTNIN-NNLHNLN 177
CF CVVC +QL GDEF L ED L CK D+E + + T I L L
Sbjct: 119 HCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLK 178
Query: 178 NEGSNSGK 185
+ + S K
Sbjct: 179 SAYNTSPK 186
>gi|30023847|ref|NP_835258.1| LIM/homeobox protein Lhx3 isoform a [Homo sapiens]
gi|12643415|sp|Q9UBR4.2|LHX3_HUMAN RecName: Full=LIM/homeobox protein Lhx3; Short=LIM homeobox protein
3
gi|7110143|gb|AAF36808.1|AF156888_1 LIM homeobox protein 3 isoform a [Homo sapiens]
gi|16565927|gb|AAL26314.1| LIM homeobox protein 3 [Homo sapiens]
gi|119608612|gb|EAW88206.1| LIM homeobox 3, isoform CRA_b [Homo sapiens]
gi|326205254|dbj|BAJ84009.1| LIM/homeobox protein Lhx3 [Homo sapiens]
gi|326205256|dbj|BAJ84010.1| LIM/homeobox protein Lhx3 [Homo sapiens]
gi|326205264|dbj|BAJ84014.1| LIM/homeobox protein Lhx3 [Homo sapiens]
Length = 397
Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 85/187 (45%), Gaps = 34/187 (18%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
R + LC GC I D++IL+ A D WH+ CL+C++CH L E C
Sbjct: 26 REIPLCAGCDQHILDRFILK-ALDRHWHSKCLKCSDCHTPLAERC--------------- 69
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
F R YCK D+ + FGTKC C L V RA++ +YH+
Sbjct: 70 ---------------FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLH 114
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHE-GMDKSSNGENNNNNTNIN-NNLHNLNN 178
CF CVVC +QL GDEF L ED L CK D+E + + T I L L +
Sbjct: 115 CFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKS 174
Query: 179 EGSNSGK 185
+ S K
Sbjct: 175 AYNTSPK 181
>gi|215276334|gb|ACJ65031.1| LHX9 [Xenopus laevis]
Length = 399
Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 75/147 (51%), Gaps = 30/147 (20%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 69 KPTLCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 103
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTK-CEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F K C +C+L + VMRA+ +YH+
Sbjct: 104 ----KLTLESELTCFAKDGSIYCKEDYYRRFSVKRCARCHLGISASEMVMRARESVYHLS 159
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCK 148
CF C C K L GD+F ++E+ ++C+
Sbjct: 160 CFTCTTCNKTLSTGDQFGMKENLVYCR 186
>gi|14579221|gb|AAK69169.1|AF282899_1 LIM homeobox protein [Homo sapiens]
gi|15146348|dbj|BAB62817.1| LIM homeobox 4 [Homo sapiens]
Length = 367
Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 87/188 (46%), Gaps = 35/188 (18%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+++ C GC I D++IL+V D WH++CL+CA+C L + CF R G Y
Sbjct: 2 QQIPQCAGCNQHILDKFILKVL-DRHWHSSCLKCADCQMQLADR--CFSRAGSVY----- 53
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
CK D+ + FGTKC C V +A++ +YH+
Sbjct: 54 -----------------------CKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLH 90
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGM---DKSSNGENNNNNTNINNNLHNLN 177
CF C++C +QL GDEF L EDG L CK+D+E D S G T L L
Sbjct: 91 CFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLK 150
Query: 178 NEGSNSGK 185
N NS K
Sbjct: 151 NAYKNSPK 158
>gi|109109777|ref|XP_001096075.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Macaca mulatta]
Length = 397
Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 84/187 (44%), Gaps = 34/187 (18%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
R + LC GC I D++IL+ D WH+ CL+C++CH L E C
Sbjct: 26 REIPLCAGCDQHILDRFILKAL-DRHWHSKCLKCSDCHTPLAERC--------------- 69
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
F R YCK D+ + FGTKC C L V RA++ +YH+
Sbjct: 70 ---------------FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLH 114
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHE-GMDKSSNGENNNNNTNIN-NNLHNLNN 178
CF CVVC +QL GDEF L ED L CK D+E + + T I L L +
Sbjct: 115 CFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKS 174
Query: 179 EGSNSGK 185
+ S K
Sbjct: 175 AYNTSPK 181
>gi|410903283|ref|XP_003965123.1| PREDICTED: LIM domain transcription factor LMO4-B-like [Takifugu
rubripes]
Length = 233
Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 90/195 (46%), Gaps = 38/195 (19%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCGG+I D+++L + + WH CLRC+ CH L E F R
Sbjct: 23 CAGCGGRITDRFLL-FSMERYWHTRCLRCSCCHAELGE----FSR--------------- 62
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFG--TKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ R G CK DY+RLFG C C + VMRA+ +YH++CF
Sbjct: 63 --------SCYSRGGMILCKDDYIRLFGHTGACSACGQTIPPSEMVMRAQGSVYHLKCFT 114
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEGMD--------KSSNGENNNNNTNINNNLHNL 176
C C +LVPGD F +FC+ DH G + ++G + I+ +L
Sbjct: 115 CATCRNRLVPGDRFHYINGSIFCEHDHPGPELHGGHAAPLQASGRMSEQKMPISEDLSWT 174
Query: 177 NNEGSNSGKIQLYLL 191
+ S + K Q+YLL
Sbjct: 175 ISSTSLAKKAQMYLL 189
>gi|332833327|ref|XP_003312450.1| PREDICTED: LIM/homeobox protein Lhx3 [Pan troglodytes]
Length = 396
Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 84/185 (45%), Gaps = 34/185 (18%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ LC GC I D++IL+ A D WH+ CL+C++CH L E C
Sbjct: 27 IPLCAGCDQHILDRFILK-ALDRHWHSKCLKCSDCHTPLAERC----------------- 68
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F R YCK D+ R FGTKC C L V RA++ +YH+ CF
Sbjct: 69 -------------FSRGESVYCKDDFFRRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCF 115
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHE-GMDKSSNGENNNNNTNIN-NNLHNLNNEG 180
CVVC +QL GDEF L ED L CK D+E + + T I L L +
Sbjct: 116 ACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKSAY 175
Query: 181 SNSGK 185
+ S K
Sbjct: 176 NTSPK 180
>gi|149058349|gb|EDM09506.1| LIM homeobox protein 4 (predicted), isoform CRA_a [Rattus
norvegicus]
Length = 376
Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 85/186 (45%), Gaps = 35/186 (18%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ C GC I D++IL+V D WH++CL+CA+C L + CF R G Y
Sbjct: 13 IPQCAGCNQHILDKFILKVL-DRHWHSSCLKCADCQMQLADR--CFSRAGSVY------- 62
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
CK D+ + FGTKC C V +A++ +YH+ CF
Sbjct: 63 ---------------------CKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCF 101
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHEGM---DKSSNGENNNNNTNINNNLHNLNNE 179
C++C +QL GDEF L EDG L CK+D+E D S G T L L N
Sbjct: 102 ACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLKNA 161
Query: 180 GSNSGK 185
NS K
Sbjct: 162 YKNSPK 167
>gi|397508667|ref|XP_003824769.1| PREDICTED: LIM/homeobox protein Lhx4 [Pan paniscus]
gi|410034179|ref|XP_524984.3| PREDICTED: LIM/homeobox protein Lhx4 [Pan troglodytes]
Length = 466
Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 87/188 (46%), Gaps = 35/188 (18%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+++ C GC I D++IL+V D WH++CL+CA+C L + CF R G Y
Sbjct: 101 QQIPQCAGCNQHILDKFILKVL-DRHWHSSCLKCADCQMQLADR--CFSRAGSVY----- 152
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
CK D+ + FGTKC C V +A++ +YH+
Sbjct: 153 -----------------------CKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLH 189
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGM---DKSSNGENNNNNTNINNNLHNLN 177
CF C++C +QL GDEF L EDG L CK+D+E D S G T L L
Sbjct: 190 CFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLK 249
Query: 178 NEGSNSGK 185
N NS K
Sbjct: 250 NAYKNSPK 257
>gi|91077954|ref|XP_967240.1| PREDICTED: similar to CG32105 CG32105-PB [Tribolium castaneum]
Length = 472
Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 85/167 (50%), Gaps = 35/167 (20%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C GCG +IHD+Y++RVA D WH CL C+ C L
Sbjct: 127 MCEGCGQKIHDRYLMRVA-DASWHEHCLTCSICGVQLAH--------------------- 164
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
+C+ R+ K YCK DY R+FG KC +C + VMRA+ ++H+ CF C
Sbjct: 165 ---------SCYTRNTKLYCKADYDRIFGVKCSRCGDRLLPHEMVMRAQQHVFHLPCFVC 215
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEG----MDKSSNGENNNNNTN 168
VVC + L G++F LR LFC+ D E M ++S+G+++ + N
Sbjct: 216 VVCCQPLQKGEQFVLRAGQLFCRQDFEKEMYLMQQASSGDDDMLDEN 262
>gi|114627512|ref|XP_001171089.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Pan troglodytes]
Length = 402
Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 84/185 (45%), Gaps = 34/185 (18%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ LC GC I D++IL+ A D WH+ CL+C++CH L E C
Sbjct: 33 IPLCAGCDQHILDRFILK-ALDRHWHSKCLKCSDCHTPLAERC----------------- 74
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F R YCK D+ R FGTKC C L V RA++ +YH+ CF
Sbjct: 75 -------------FSRGESVYCKDDFFRRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCF 121
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHE-GMDKSSNGENNNNNTNIN-NNLHNLNNEG 180
CVVC +QL GDEF L ED L CK D+E + + T I L L +
Sbjct: 122 ACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKSAY 181
Query: 181 SNSGK 185
+ S K
Sbjct: 182 NTSPK 186
>gi|281354363|gb|EFB29947.1| hypothetical protein PANDA_009642 [Ailuropoda melanoleuca]
Length = 365
Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 85/186 (45%), Gaps = 35/186 (18%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ C GC I D++IL+V D WH++CL+CA+C L + CF R G Y
Sbjct: 2 IPQCAGCNQHILDKFILKVL-DRHWHSSCLKCADCQMQLADR--CFSRAGSVY------- 51
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
CK D+ + FGTKC C V +A++ +YH+ CF
Sbjct: 52 ---------------------CKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCF 90
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHEGM---DKSSNGENNNNNTNINNNLHNLNNE 179
CV+C +QL GDEF L EDG L CK+D+E D S G T L L N
Sbjct: 91 SCVICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLKNA 150
Query: 180 GSNSGK 185
NS K
Sbjct: 151 YKNSPK 156
>gi|270002859|gb|EEZ99306.1| LIM homeobox transcription factor 1, beta [Tribolium castaneum]
Length = 388
Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 85/167 (50%), Gaps = 35/167 (20%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C GCG +IHD+Y++RVA D WH CL C+ C L
Sbjct: 43 MCEGCGQKIHDRYLMRVA-DASWHEHCLTCSICGVQLAH--------------------- 80
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
+C+ R+ K YCK DY R+FG KC +C + VMRA+ ++H+ CF C
Sbjct: 81 ---------SCYTRNTKLYCKADYDRIFGVKCSRCGDRLLPHEMVMRAQQHVFHLPCFVC 131
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEG----MDKSSNGENNNNNTN 168
VVC + L G++F LR LFC+ D E M ++S+G+++ + N
Sbjct: 132 VVCCQPLQKGEQFVLRAGQLFCRQDFEKEMYLMQQASSGDDDMLDEN 178
>gi|133778048|gb|AAI27382.2| LIM homeobox 2 [Danio rerio]
gi|182888988|gb|AAI64490.1| Lhx2 protein [Danio rerio]
Length = 396
Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 75/147 (51%), Gaps = 30/147 (20%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R++LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 49 RVALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 83
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 84 ----KLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLN 139
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCK 148
CF C C K L GD F +++ ++CK
Sbjct: 140 CFTCTTCNKMLTTGDHFGMKDSLVYCK 166
>gi|397492170|ref|XP_003817001.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 3 [Pan paniscus]
Length = 377
Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 76/152 (50%), Gaps = 32/152 (21%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+++ LC GC I D++IL+ A D WH+ CL+C++CH L E C
Sbjct: 2 QQIPLCAGCDQHILDRFILK-ALDRHWHSKCLKCSDCHTPLAERC--------------- 45
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
F R YCK D+ R FGTKC C L V RA++ +YH+
Sbjct: 46 ---------------FSRGESVYCKDDFFRRFGTKCAACQLGIPPTQVVRRAQDFVYHLH 90
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHE 152
CF CVVC +QL GDEF L ED L CK D+E
Sbjct: 91 CFACVVCKRQLATGDEFYLMEDSRLVCKADYE 122
>gi|444521209|gb|ELV13150.1| LIM/homeobox protein Lhx3 [Tupaia chinensis]
Length = 290
Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 89/197 (45%), Gaps = 41/197 (20%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
R + LC GC I D++IL+ D WH+ CL+C +CH L E C
Sbjct: 27 REIPLCAGCDQHILDRFILKAL-DRHWHSQCLKCCDCHAPLAERC--------------- 70
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
F R YCK D+ + FGTKC C L V RA++ +YH+
Sbjct: 71 ---------------FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLH 115
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGMDK------SSNGENNNNNTNINNNLH 174
CF CVVC +QL GDEF L ED L CK D+E + +S G N+ ++
Sbjct: 116 CFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQRDEPPLASVGPANSLYGSLGEPAP 175
Query: 175 NLNNEGSNSGKIQLYLL 191
L G +G + ++L
Sbjct: 176 AL---GRPTGALGSFVL 189
>gi|148224455|ref|NP_001087527.1| LIM/homeobox protein Lhx9 [Xenopus laevis]
gi|82198794|sp|Q68EY3.1|LHX9_XENLA RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
gi|51258697|gb|AAH80067.1| Lhx9 protein [Xenopus laevis]
Length = 331
Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 74/146 (50%), Gaps = 29/146 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 69 KPTLCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 103
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQC 122
L+ TCF +DG YCK DY R +C +C+L + VMRA+ +YH+ C
Sbjct: 104 ----KLTLESELTCFAKDGSIYCKEDYYRFSVKRCARCHLGISASEMVMRARESVYHLSC 159
Query: 123 FCCVVCGKQLVPGDEFALREDGLFCK 148
F C C K L GD+F ++E+ ++C+
Sbjct: 160 FTCTTCNKTLSTGDQFGMKENLVYCR 185
>gi|355746127|gb|EHH50752.1| hypothetical protein EGM_01626, partial [Macaca fascicularis]
Length = 364
Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 85/186 (45%), Gaps = 35/186 (18%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ C GC I D++IL+V D WH++CL+CA+C L + CF R G Y
Sbjct: 1 IPQCAGCNQHILDKFILKVL-DRHWHSSCLKCADCQMQLADR--CFSRAGSVY------- 50
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
CK D+ + FGTKC C V +A++ +YH+ CF
Sbjct: 51 ---------------------CKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCF 89
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHEGM---DKSSNGENNNNNTNINNNLHNLNNE 179
C++C +QL GDEF L EDG L CK+D+E D S G T L L N
Sbjct: 90 ACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLKNA 149
Query: 180 GSNSGK 185
NS K
Sbjct: 150 YKNSPK 155
>gi|432874756|ref|XP_004072577.1| PREDICTED: LIM homeobox transcription factor 1-beta-like [Oryzias
latipes]
Length = 398
Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 75/148 (50%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S+C GC I D++++RV D WH CL+CA C Q L
Sbjct: 54 SVCEGCQRPISDRFLMRVN-DSSWHEECLQCAVCQQPL---------------------- 90
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C++R+ K YCK DY +LF TKC C +FVMRA +YH+ CFC
Sbjct: 91 --------TTSCYLRERKLYCKHDYQQLFATKCSGCMEKIAPTEFVMRALECVYHLNCFC 142
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C VC +QL GDEF L+E L CK D+E
Sbjct: 143 CCVCDRQLRKGDEFVLKEGQLLCKVDYE 170
>gi|327270281|ref|XP_003219918.1| PREDICTED: LIM/homeobox protein Lhx4-like [Anolis carolinensis]
Length = 449
Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 84/186 (45%), Gaps = 35/186 (18%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ C GC I D++IL+V D WH +CL+CA+C L + CF R G Y
Sbjct: 86 IPQCAGCNQHILDKFILKVL-DRHWHGSCLKCADCQMQLADR--CFSRAGSVY------- 135
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
CK D+ + FGTKC C V +A++ +YH+ CF
Sbjct: 136 ---------------------CKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCF 174
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHEGM---DKSSNGENNNNNTNINNNLHNLNNE 179
C++C +QL GDEF L EDG L CK+D+E D S G T L L N
Sbjct: 175 ACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLKNA 234
Query: 180 GSNSGK 185
NS K
Sbjct: 235 YKNSPK 240
>gi|345326124|ref|XP_001508297.2| PREDICTED: hypothetical protein LOC100077000 [Ornithorhynchus
anatinus]
Length = 553
Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 92/191 (48%), Gaps = 41/191 (21%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GC I D+++LRV + WH CL+CA C Q L
Sbjct: 207 AVCEGCQRPISDRFLLRVN-EASWHEECLQCAACQQAL---------------------- 243
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFC
Sbjct: 244 --------TTSCYFRDRKLYCKQDYQQLFAAKCSGCLEKIAPTEFVMRALECVYHLGCFC 295
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE---------GMDKSSNGENNNNNTNINNNLHN 175
C VC +QL GDEF L+E L CK D+E D+S + ++++ + ++
Sbjct: 296 CCVCERQLRKGDEFVLKEGQLLCKSDYEKEKDLLSSVSPDESDSVKSDDEDGDVKPTKGQ 355
Query: 176 LNN-EGSNSGK 185
+ +GS+ GK
Sbjct: 356 ASQGKGSDDGK 366
>gi|224493113|sp|A2I8Z7.1|LHX9_ASTFA RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
gi|121531644|gb|ABM55505.1| LIM/homeobox protein 9 [Astyanax mexicanus]
Length = 377
Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCG +I D+Y L +A D +WH CL+C EC
Sbjct: 48 KPALCAGCGSKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 82
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 83 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 138
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +RE+ ++C+ E +
Sbjct: 139 CFTCTSCNKTLTTGDHFGMRENLVYCRAHFESL 171
>gi|397492168|ref|XP_003817000.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Pan paniscus]
Length = 390
Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 73/150 (48%), Gaps = 32/150 (21%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ LC GC I D++IL+ D WH+ CL+C++CH L E C
Sbjct: 17 IPLCAGCDQHILDRFILKAL-DRHWHSKCLKCSDCHTPLAERC----------------- 58
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F R YCK D+ R FGTKC C L V RA++ +YH+ CF
Sbjct: 59 -------------FSRGESVYCKDDFFRRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCF 105
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHE 152
CVVC +QL GDEF L ED L CK D+E
Sbjct: 106 ACVVCKRQLATGDEFYLMEDSRLVCKADYE 135
>gi|410986575|ref|XP_003999585.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Felis catus]
Length = 382
Score = 105 bits (263), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 89/189 (47%), Gaps = 39/189 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S+C GC I D+++LR+ D WH C++CA C + L+
Sbjct: 33 SVCEGCQRVISDRFLLRLN-DSFWHEQCVQCASCKEPLE--------------------- 70
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
TCF RD K YCK DY +LF KC C +FVMRA+ +YH+ CFC
Sbjct: 71 ---------TTCFYRDKKLYCKYDYEKLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFC 121
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEG--------MDKSSNGENNNNNTNINNNLHNL 176
C VC +QL GDEF L+E L CK D+E +S+ +++ ++ ++H
Sbjct: 122 CCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSLVSPAASDSGKSDDEESLCKSVHGA 181
Query: 177 NNEGSNSGK 185
+ GK
Sbjct: 182 GKGAAEDGK 190
>gi|296191171|ref|XP_002743509.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 3 [Callithrix jacchus]
Length = 373
Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 86/187 (45%), Gaps = 34/187 (18%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+++ LC GC I D++IL+ A D WH+ CL+C++CH L E C
Sbjct: 2 QQIPLCAGCDQHILDRFILK-ALDRHWHSKCLKCSDCHTPLAERC--------------- 45
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
F R YCK D+ + FGTKC C L V RA++ +YH+
Sbjct: 46 ---------------FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLH 90
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHE-GMDKSSNGENNNNNTNIN-NNLHNLNN 178
CF CVVC +QL GDEF L ED L CK D+E + + T I L L +
Sbjct: 91 CFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKS 150
Query: 179 EGSNSGK 185
+ S K
Sbjct: 151 AYNTSPK 157
>gi|49659006|emb|CAD37944.1| homeobox protein LHX [Suberites domuncula]
Length = 342
Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 80/180 (44%), Gaps = 32/180 (17%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D++IL+V D WH+ CLRC +C L + C
Sbjct: 119 CAGCHHPIVDRFILKVL-DKPWHSKCLRCVDCDMLLTDKC-------------------- 157
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
+ RDG+ +CK D+ R FGT+C CN V RA+ +YH+QCF C
Sbjct: 158 ----------YSRDGEVFCKADFSRRFGTRCAGCNQPIPPTQVVRRAQENVYHLQCFACF 207
Query: 127 VCGKQLVPGDEFALRED-GLFCKDDHEGMDKSSNGENNNNNTNINNNLHNLNNEGSNSGK 185
+C +QL GDEF L +D L CK D+E + T + L L + S K
Sbjct: 208 ICSRQLSTGDEFYLMDDKKLVCKADYEAARAKDGNQKRPRTTITSKQLDTLKAAYTVSSK 267
>gi|351696220|gb|EHA99138.1| LIM homeobox transcription factor 1-alpha [Heterocephalus glaber]
Length = 382
Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 75/148 (50%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S+C GC I D+++LR+ D WH C++CA C + L+
Sbjct: 33 SVCEGCQRVISDRFLLRLN-DSFWHEQCVQCASCKEPLE--------------------- 70
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
TCF RD K YCK DY +LF KC C +FVMRA+ +YH+ CFC
Sbjct: 71 ---------TTCFYRDKKLYCKYDYEKLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFC 121
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C VC +QL GDEF L+E L CK D+E
Sbjct: 122 CCVCERQLQKGDEFVLKEGQLLCKGDYE 149
>gi|348565813|ref|XP_003468697.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Cavia
porcellus]
Length = 382
Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 75/148 (50%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S+C GC I D+++LR+ D WH C++CA C + L+
Sbjct: 33 SVCEGCQRVISDRFLLRLN-DSFWHEQCVQCASCKEPLE--------------------- 70
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
TCF RD K YCK DY +LF KC C +FVMRA+ +YH+ CFC
Sbjct: 71 ---------TTCFYRDKKLYCKYDYEKLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFC 121
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C VC +QL GDEF L+E L CK D+E
Sbjct: 122 CCVCERQLQKGDEFVLKEGQLLCKGDYE 149
>gi|300797454|ref|NP_001178254.1| LIM homeobox transcription factor 1-alpha [Bos taurus]
gi|296489924|tpg|DAA32037.1| TPA: LIM homeobox transcription factor 1 alpha-like [Bos taurus]
Length = 382
Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 75/148 (50%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S+C GC I D+++LR+ D WH C++CA C + L+
Sbjct: 33 SVCEGCQRVISDRFLLRLN-DSFWHEQCVQCASCKEPLE--------------------- 70
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
TCF RD K YCK DY +LF KC C +FVMRA+ +YH+ CFC
Sbjct: 71 ---------TTCFYRDKKLYCKYDYEKLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFC 121
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C VC +QL GDEF L+E L CK D+E
Sbjct: 122 CCVCERQLQKGDEFVLKEGQLLCKGDYE 149
>gi|426217051|ref|XP_004002767.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Ovis aries]
Length = 382
Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 75/148 (50%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S+C GC I D+++LR+ D WH C++CA C + L+
Sbjct: 33 SVCEGCQRVISDRFLLRLN-DSFWHEQCVQCASCKEPLE--------------------- 70
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
TCF RD K YCK DY +LF KC C +FVMRA+ +YH+ CFC
Sbjct: 71 ---------TTCFYRDKKLYCKYDYEKLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFC 121
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C VC +QL GDEF L+E L CK D+E
Sbjct: 122 CCVCERQLQKGDEFVLKEGQLLCKGDYE 149
>gi|410921498|ref|XP_003974220.1| PREDICTED: LIM/homeobox protein Lhx4-like [Takifugu rubripes]
Length = 389
Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 86/188 (45%), Gaps = 35/188 (18%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+++ C GC I D++IL+V D WH+ CL+CA+C L + CF R G YCK D+
Sbjct: 26 QQIPQCAGCSQHILDKFILKVL-DRHWHSKCLKCADCQTPLADK--CFSRAGSVYCKEDF 82
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
F R FGTKC C V +A++ +YH+
Sbjct: 83 ---------------FKR-------------FGTKCASCQQGIPPMQVVRKAQDFVYHLH 114
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGM---DKSSNGENNNNNTNINNNLHNLN 177
CF C++C +QL GDEF L EDG L CK D+E D S G T L L
Sbjct: 115 CFACIMCSRQLATGDEFYLMEDGRLVCKVDYEAAKQNDDSEAGTKRPRTTITAKQLETLK 174
Query: 178 NEGSNSGK 185
+ NS K
Sbjct: 175 SAYKNSPK 182
>gi|291397514|ref|XP_002715925.1| PREDICTED: LIM homeobox transcription factor 1 alpha-like
[Oryctolagus cuniculus]
Length = 382
Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 75/148 (50%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S+C GC I D+++LR+ D WH C++CA C + L+
Sbjct: 33 SVCEGCQRVISDRFLLRLN-DSFWHEQCVQCASCKEPLE--------------------- 70
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
TCF RD K YCK DY +LF KC C +FVMRA+ +YH+ CFC
Sbjct: 71 ---------TTCFYRDKKLYCKYDYEKLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFC 121
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C VC +QL GDEF L+E L CK D+E
Sbjct: 122 CCVCERQLQKGDEFVLKEGQLLCKGDYE 149
>gi|345797790|ref|XP_851352.2| PREDICTED: LIM homeobox transcription factor 1-alpha [Canis lupus
familiaris]
Length = 382
Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 75/148 (50%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S+C GC I D+++LR+ D WH C++CA C + L+
Sbjct: 33 SVCEGCQRVISDRFLLRLN-DSFWHEQCVQCASCKEPLE--------------------- 70
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
TCF RD K YCK DY +LF KC C +FVMRA+ +YH+ CFC
Sbjct: 71 ---------TTCFYRDKKLYCKYDYEKLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFC 121
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C VC +QL GDEF L+E L CK D+E
Sbjct: 122 CCVCERQLQKGDEFVLKEGQLLCKGDYE 149
>gi|334321803|ref|XP_001374523.2| PREDICTED: LIM/homeobox protein Lhx4-like [Monodelphis domestica]
Length = 391
Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 84/186 (45%), Gaps = 35/186 (18%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ C GC I D++IL+V D WH +CL+CA+C L + CF R G Y
Sbjct: 28 IPQCAGCNQHILDKFILKVL-DRHWHGSCLKCADCQMQLADR--CFSRAGSVY------- 77
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
CK D+ + FGTKC C V +A++ +YH+ CF
Sbjct: 78 ---------------------CKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCF 116
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHEGM---DKSSNGENNNNNTNINNNLHNLNNE 179
C++C +QL GDEF L EDG L CK+D+E D S G T L L N
Sbjct: 117 ACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLKNA 176
Query: 180 GSNSGK 185
NS K
Sbjct: 177 YKNSPK 182
>gi|334311509|ref|XP_001366137.2| PREDICTED: LIM homeobox transcription factor 1-beta isoform 1
[Monodelphis domestica]
Length = 394
Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 74/148 (50%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GC I D++++RV + WH CL+CA C Q L
Sbjct: 54 AVCEGCQRPISDRFLMRVN-ESSWHEECLQCAACQQAL---------------------- 90
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFC
Sbjct: 91 --------TTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLSCFC 142
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C VC +QL GDEF L+E L CK D+E
Sbjct: 143 CCVCERQLRKGDEFVLKEGQLLCKSDYE 170
>gi|402896089|ref|XP_003911140.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 3 [Papio anubis]
Length = 373
Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 86/187 (45%), Gaps = 34/187 (18%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+++ LC GC I D++IL+ A D WH+ CL+C++CH L E C
Sbjct: 2 QQIPLCAGCDQHILDRFILK-ALDRHWHSKCLKCSDCHTPLAERC--------------- 45
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
F R YCK D+ + FGTKC C L V RA++ +YH+
Sbjct: 46 ---------------FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLH 90
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHE-GMDKSSNGENNNNNTNIN-NNLHNLNN 178
CF CVVC +QL GDEF L ED L CK D+E + + T I L L +
Sbjct: 91 CFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKS 150
Query: 179 EGSNSGK 185
+ S K
Sbjct: 151 AYNTSPK 157
>gi|395505734|ref|XP_003757194.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 1
[Sarcophilus harrisii]
Length = 394
Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 74/148 (50%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GC I D++++RV + WH CL+CA C Q L
Sbjct: 54 AVCEGCQRPISDRFLMRVN-ESSWHEECLQCAACQQAL---------------------- 90
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFC
Sbjct: 91 --------TTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLSCFC 142
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C VC +QL GDEF L+E L CK D+E
Sbjct: 143 CCVCERQLRKGDEFVLKEGQLLCKSDYE 170
>gi|444725137|gb|ELW65716.1| Insulin enhancer protein ISL-1 [Tupaia chinensis]
Length = 308
Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 59/72 (81%)
Query: 92 LFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDH 151
L+G KC KC++ F + DFVMRA++K+YH++CF CV C +QL+PGDEFALREDGLFC+ DH
Sbjct: 30 LYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADH 89
Query: 152 EGMDKSSNGENN 163
+ ++++S G +
Sbjct: 90 DVVERASLGAGD 101
>gi|158296021|ref|XP_316578.4| AGAP006540-PA [Anopheles gambiae str. PEST]
gi|157016312|gb|EAA11207.4| AGAP006540-PA [Anopheles gambiae str. PEST]
Length = 334
Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 77/154 (50%), Gaps = 29/154 (18%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
+ L C CG I DQ++L V WH+ACLRC CH LD +CF+
Sbjct: 17 PKELRSCTACGEPISDQFLLDVG-GCSWHSACLRCCICHTPLDHQPSCFL---------- 65
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
R+ + YCK DY + FGTKC +C+ D+V RA++ I+H+
Sbjct: 66 ------------------RERQIYCKTDYTKRFGTKCARCSRTISATDWVRRARDLIFHL 107
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C CG+QL G++FAL +D + CK + M
Sbjct: 108 ACFACDSCGRQLSTGEQFALVDDKVLCKTHYSEM 141
>gi|348504454|ref|XP_003439776.1| PREDICTED: LIM/homeobox protein Lhx4-like [Oreochromis niloticus]
Length = 387
Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 86/188 (45%), Gaps = 35/188 (18%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+++ C GC I D++IL+V D WH+ CL+CA+C L + CF R G YCK D+
Sbjct: 26 QQIPQCAGCSQHILDKFILKVL-DRHWHSKCLKCADCQTPLADK--CFSRAGSVYCKEDF 82
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
F R FGTKC C V +A++ +YH+
Sbjct: 83 ---------------FKR-------------FGTKCASCQQGIPPTQVVRKAQDFVYHLH 114
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGM---DKSSNGENNNNNTNINNNLHNLN 177
CF C++C +QL GDEF L EDG L CK D+E D S G T L L
Sbjct: 115 CFACIMCSRQLATGDEFYLMEDGRLVCKVDYEAAKQNDDSEAGTKRPRTTITAKQLETLK 174
Query: 178 NEGSNSGK 185
+ NS K
Sbjct: 175 SAYKNSPK 182
>gi|311253923|ref|XP_003125689.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Sus
scrofa]
Length = 382
Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 75/148 (50%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S+C GC I D+++LR+ D WH C++CA C + L+
Sbjct: 33 SVCEGCQRVISDRFLLRLN-DSFWHEQCVQCASCKEPLE--------------------- 70
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
TCF RD K YCK DY +LF KC C +FVMRA+ +YH+ CFC
Sbjct: 71 ---------TTCFYRDKKLYCKYDYEKLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFC 121
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C VC +QL GDEF L+E L CK D+E
Sbjct: 122 CCVCERQLQKGDEFVLKEGQLLCKGDYE 149
>gi|395505736|ref|XP_003757195.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 2
[Sarcophilus harrisii]
Length = 404
Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 74/148 (50%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GC I D++++RV + WH CL+CA C Q L
Sbjct: 54 AVCEGCQRPISDRFLMRVN-ESSWHEECLQCAACQQAL---------------------- 90
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFC
Sbjct: 91 --------TTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLSCFC 142
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C VC +QL GDEF L+E L CK D+E
Sbjct: 143 CCVCERQLRKGDEFVLKEGQLLCKSDYE 170
>gi|170055943|ref|XP_001863808.1| lim homeobox protein [Culex quinquefasciatus]
gi|167875776|gb|EDS39159.1| lim homeobox protein [Culex quinquefasciatus]
Length = 456
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 88/167 (52%), Gaps = 40/167 (23%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D++IL+V+ D WHA CL+C+ECH L+E CF R+G+ +CK D+
Sbjct: 66 CGGCHELILDRFILKVS-DRTWHAKCLQCSECHVQLNEK--CFARNGQLFCKDDF----- 117
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R +GTKC C+L V RA++ +YH+QCF C
Sbjct: 118 ----------FKR-------------YGTKCAACDLGIPPTQVVRRAQDNVYHLQCFMCS 154
Query: 127 VCGKQLVPGDEFALREDG-LFCKDDHEGM--------DKSSNGENNN 164
+C +QL GDEF L EDG L CK D+E D S +GE++N
Sbjct: 155 MCSRQLNTGDEFYLMEDGKLVCKPDYEAAKAKGLYLSDGSLDGESSN 201
>gi|395530698|ref|XP_003767425.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Sarcophilus
harrisii]
Length = 382
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 75/148 (50%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S+C GC I D+++LR+ D WH C++CA C + L+
Sbjct: 33 SVCEGCQRVISDRFLLRLN-DSFWHEQCVQCASCKEPLE--------------------- 70
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
TCF RD K YCK DY +LF KC C +FVMRA+ +YH+ CFC
Sbjct: 71 ---------TTCFYRDKKLYCKYDYEKLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFC 121
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C VC +QL GDEF L+E L CK D+E
Sbjct: 122 CCVCERQLQKGDEFVLKEGQLLCKGDYE 149
>gi|334311511|ref|XP_003339631.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 2
[Monodelphis domestica]
Length = 401
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 74/148 (50%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GC I D++++RV + WH CL+CA C Q L
Sbjct: 54 AVCEGCQRPISDRFLMRVN-ESSWHEECLQCAACQQAL---------------------- 90
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFC
Sbjct: 91 --------TTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLSCFC 142
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C VC +QL GDEF L+E L CK D+E
Sbjct: 143 CCVCERQLRKGDEFVLKEGQLLCKSDYE 170
>gi|291232097|ref|XP_002736028.1| PREDICTED: lim 1/5-like [Saccoglossus kowalevskii]
Length = 498
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 98/186 (52%), Gaps = 41/186 (22%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ LC GC I D+++L V D WH C++C++C NCT
Sbjct: 2 VQLCAGCDRPILDRFLLNVL-DRAWHVKCVQCSDC------NCTL--------------- 39
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
S+K C+ R+GK YC+ D+VR +GTKC C+ D V RA+NK++H++CF
Sbjct: 40 SDK---------CYSREGKLYCRTDFVRRYGTKCAGCSHGIAPNDLVRRARNKVFHLKCF 90
Query: 124 CCVVCGKQLVPGDE-FALREDGLFCKDDHEGMDKSSNGENNN--------NNTNINNNLH 174
C+VC KQL G+E + + E+ CKDD+ G KS + E++ +N ++ N +
Sbjct: 91 TCMVCSKQLSTGEELYVVDENQYICKDDYLG-SKSPSAESDQTDMSVGPLSNGPVSTNGY 149
Query: 175 NLNNEG 180
+L N G
Sbjct: 150 SLTNGG 155
>gi|18308156|gb|AAL67847.1|AF461699_1 LIM homeobox protein [Gallus gallus]
Length = 214
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 83/185 (44%), Gaps = 34/185 (18%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ LC GC I D++IL+V D WH+ CL+C++C L E C
Sbjct: 25 IPLCAGCNQHIVDRFILKVL-DRHWHSKCLKCSDCQTQLAEKC----------------- 66
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F R YCK D+ + FGTKC C V RA++ +YH+ CF
Sbjct: 67 -------------FSRGDGVYCKEDFFKRFGTKCAACQQGIPPTQVVRRAQDFVYHLHCF 113
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHEGMDK--SSNGENNNNNTNINNNLHNLNNEG 180
C+VC +QL GDEF L ED L CK D+E + + + T L L N
Sbjct: 114 ACIVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAESTAKRPRTTITAKQLETLKNAY 173
Query: 181 SNSGK 185
+NS K
Sbjct: 174 NNSPK 178
>gi|149755774|ref|XP_001493379.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Equus
caballus]
Length = 382
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 75/148 (50%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S+C GC I D+++LR+ D WH C++CA C + L+
Sbjct: 33 SVCEGCQRVISDRFLLRLN-DSFWHEQCVQCASCKEPLE--------------------- 70
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
TCF RD K YCK DY +LF KC C +FVMRA+ +YH+ CFC
Sbjct: 71 ---------TTCFYRDKKLYCKYDYEKLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFC 121
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C VC +QL GDEF L+E L CK D+E
Sbjct: 122 CCVCERQLQKGDEFVLKEGQLLCKGDYE 149
>gi|301756737|ref|XP_002914217.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like
[Ailuropoda melanoleuca]
Length = 382
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 75/148 (50%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S+C GC I D+++LR+ D WH C++CA C + L+
Sbjct: 33 SVCEGCQRVISDRFLLRLN-DSFWHEQCVQCASCKEPLE--------------------- 70
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
TCF RD K YCK DY +LF KC C +FVMRA+ +YH+ CFC
Sbjct: 71 ---------TTCFYRDKKLYCKYDYEKLFAVKCGGCFEAVAPNEFVMRAQKSVYHLSCFC 121
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C VC +QL GDEF L+E L CK D+E
Sbjct: 122 CCVCERQLQKGDEFVLKEGQLLCKGDYE 149
>gi|328787176|ref|XP_392622.4| PREDICTED: protein apterous [Apis mellifera]
Length = 560
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 76/149 (51%), Gaps = 31/149 (20%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C GCG +I D++ L+ D WHAACL+C+ C Q LD TCF RDG YC
Sbjct: 187 VCAGCGLRISDRFYLQAV-DRRWHAACLQCSHCRQGLDGEVTCFSRDGNIYC-------- 237
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGT--KCEKCNLNFKREDFVMRAKNKIYHVQCF 123
K+DY R+FG+ +C +C+ + VMRA++ ++HV+CF
Sbjct: 238 --------------------KKDYYRMFGSMKRCARCHAAILASELVMRARDLVFHVRCF 277
Query: 124 CCVVCGKQLVPGDEFALREDGLFCKDDHE 152
C C L GD F +R+ + C+ +E
Sbjct: 278 SCAACAVPLTKGDHFGMRDGAVLCRLHYE 306
>gi|193786574|dbj|BAG51357.1| unnamed protein product [Homo sapiens]
Length = 406
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 77/153 (50%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 49 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 83
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG +YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 84 ----KLNLESELTCFSKDGSSYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLN 139
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 140 CFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEAL 172
>gi|395505738|ref|XP_003757196.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 3
[Sarcophilus harrisii]
Length = 401
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 74/148 (50%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GC I D++++RV + WH CL+CA C Q L
Sbjct: 54 AVCEGCQRPISDRFLMRVN-ESSWHEECLQCAACQQAL---------------------- 90
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFC
Sbjct: 91 --------TTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLSCFC 142
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C VC +QL GDEF L+E L CK D+E
Sbjct: 143 CCVCERQLRKGDEFVLKEGQLLCKSDYE 170
>gi|126306172|ref|XP_001363612.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Monodelphis
domestica]
Length = 382
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 75/148 (50%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S+C GC I D+++LR+ D WH C++CA C + L+
Sbjct: 33 SVCEGCQRVISDRFLLRLN-DSFWHEQCVQCASCKEPLE--------------------- 70
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
TCF RD K YCK DY +LF KC C +FVMRA+ +YH+ CFC
Sbjct: 71 ---------TTCFYRDKKLYCKYDYEKLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFC 121
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C VC +QL GDEF L+E L CK D+E
Sbjct: 122 CCVCERQLQKGDEFVLKEGQLLCKGDYE 149
>gi|344287033|ref|XP_003415260.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Loxodonta
africana]
Length = 382
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 87/189 (46%), Gaps = 39/189 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S+C GC I D+++LR+ D WH C+ CA C + L+
Sbjct: 33 SVCEGCQRVISDRFLLRLN-DSFWHEQCVLCASCKEPLE--------------------- 70
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
TCF RD K YCK DY +LF KC C +FVMRA+ +YH+ CFC
Sbjct: 71 ---------TTCFYRDKKLYCKYDYEKLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFC 121
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEG--------MDKSSNGENNNNNTNINNNLHNL 176
C VC +QL GDEF L+E L CK D+E +S+ +++ N+ + H
Sbjct: 122 CCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSLVSPAASDSGKSDDEENLCKSAHGA 181
Query: 177 NNEGSNSGK 185
+ GK
Sbjct: 182 GKGAAEDGK 190
>gi|62955397|ref|NP_001017710.1| LIM/homeobox protein Lhx9 isoform 1 [Danio rerio]
gi|62205415|gb|AAH93258.1| LIM homeobox 9 [Danio rerio]
Length = 330
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 77/153 (50%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 67 RPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 101
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 102 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 157
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F ++++ ++C+ E +
Sbjct: 158 CFTCTTCNKTLTTGDHFGMKDNLVYCRVHFETL 190
>gi|354497584|ref|XP_003510899.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Cricetulus griseus]
Length = 401
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 85/187 (45%), Gaps = 34/187 (18%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
R + +C GC I D++IL+ A D WH+ CL+C++CH L E C
Sbjct: 29 REIPMCAGCDQHILDRFILK-ALDRHWHSKCLKCSDCHIPLAERC--------------- 72
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
F R YCK D+ + FGTKC C L V RA++ +YH+
Sbjct: 73 ---------------FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLH 117
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHE-GMDKSSNGENNNNNTNIN-NNLHNLNN 178
CF CVVC +QL GDEF L ED L CK D+E + + T I L L +
Sbjct: 118 CFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKS 177
Query: 179 EGSNSGK 185
+ S K
Sbjct: 178 AYNTSPK 184
>gi|326924940|ref|XP_003208680.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 1 [Meleagris
gallopavo]
Length = 338
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 8 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 42
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA+ +YH+
Sbjct: 43 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARESVYHLS 98
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F ++++ ++C+ E +
Sbjct: 99 CFTCTTCNKTLTTGDHFGMKDNLVYCRAHFESL 131
>gi|190338019|gb|AAI62549.1| LIM homeobox 2 [Danio rerio]
Length = 396
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 75/147 (51%), Gaps = 30/147 (20%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R++LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 49 RVALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 83
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 84 ----KLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLN 139
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCK 148
CF C C K L GD F +++ ++C+
Sbjct: 140 CFTCTTCNKMLTTGDHFGMKDSLVYCR 166
>gi|405961382|gb|EKC27193.1| LIM/homeobox protein Lhx9 [Crassostrea gigas]
Length = 415
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 75/149 (50%), Gaps = 30/149 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S C GCG +I D+Y L +A D +WH CL+C EC
Sbjct: 60 SFCAGCGSRIFDRYYL-MAVDKQWHVNCLKCCEC-------------------------- 92
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTK-CEKCNLNFKREDFVMRAKNKIYHVQCF 123
LD TCF RDG YCK DY R + K C +C+ + VMRAK+ ++H+ CF
Sbjct: 93 --KIGLDSELTCFARDGNIYCKEDYYRRYAVKRCTRCHQGITANELVMRAKDLVFHINCF 150
Query: 124 CCVVCGKQLVPGDEFALREDGLFCKDDHE 152
C C K L GD+F +++D ++C+ D+E
Sbjct: 151 TCASCNKTLTTGDQFGMQDDLIYCRTDYE 179
>gi|449268141|gb|EMC79011.1| LIM/homeobox protein Lhx9 [Columba livia]
Length = 378
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 48 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 82
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA+ +YH+
Sbjct: 83 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARESVYHLS 138
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F ++++ ++C+ E +
Sbjct: 139 CFTCTTCNKTLTTGDHFGMKDNLVYCRAHFESL 171
>gi|45382197|ref|NP_990757.1| LIM/homeobox protein Lhx9 [Gallus gallus]
gi|556038|gb|AAA50258.1| homeobox protein [Gallus gallus]
Length = 378
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 48 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 82
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA+ +YH+
Sbjct: 83 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARESVYHLS 138
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F ++++ ++C+ E +
Sbjct: 139 CFTCTTCNKTLTTGDHFGMKDNLVYCRAHFESL 171
>gi|348569787|ref|XP_003470679.1| PREDICTED: LIM homeobox transcription factor 1-beta-like [Cavia
porcellus]
Length = 402
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 89/184 (48%), Gaps = 36/184 (19%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GC I D++++RV + WH CL+CA C Q L
Sbjct: 54 AVCEGCQRPISDRFLMRVN-ESSWHEECLQCAACQQAL---------------------- 90
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFC
Sbjct: 91 --------TTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFC 142
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEG----MDKSSNGENNN-NNTNINNNLHNLNNE 179
C VC +QL GDEF L+E L CK D+E + S E+++ + + + ++ +
Sbjct: 143 CCVCERQLRKGDEFVLKEGQLLCKGDYEKEKDLLSSVSPDESDSVKSEDEDGDMKPTKGQ 202
Query: 180 GSNS 183
GS S
Sbjct: 203 GSQS 206
>gi|281348858|gb|EFB24442.1| hypothetical protein PANDA_002084 [Ailuropoda melanoleuca]
Length = 368
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 75/148 (50%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S+C GC I D+++LR+ D WH C++CA C + L+
Sbjct: 19 SVCEGCQRVISDRFLLRLN-DSFWHEQCVQCASCKEPLE--------------------- 56
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
TCF RD K YCK DY +LF KC C +FVMRA+ +YH+ CFC
Sbjct: 57 ---------TTCFYRDKKLYCKYDYEKLFAVKCGGCFEAVAPNEFVMRAQKSVYHLSCFC 107
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C VC +QL GDEF L+E L CK D+E
Sbjct: 108 CCVCERQLQKGDEFVLKEGQLLCKGDYE 135
>gi|311213854|ref|NP_001185656.1| LIM homeobox 9 [Taeniopygia guttata]
Length = 378
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 48 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 82
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA+ +YH+
Sbjct: 83 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARESVYHLS 138
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F ++++ ++C+ E +
Sbjct: 139 CFTCTTCNKTLTTGDHFGMKDNLVYCRAHFESL 171
>gi|75993708|gb|ABA33890.1| lim homeobox transcription factor 2 [Danio rerio]
Length = 396
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 75/147 (51%), Gaps = 30/147 (20%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R++LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 49 RVALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 83
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 84 ----KLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLN 139
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCK 148
CF C C K L GD F +++ ++C+
Sbjct: 140 CFTCTTCNKMLTTGDHFGMKDSLVYCR 166
>gi|397473155|ref|XP_003808084.1| PREDICTED: LOW QUALITY PROTEIN: LIM homeobox transcription factor
1-beta [Pan paniscus]
Length = 402
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 89/184 (48%), Gaps = 36/184 (19%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GC I D++++RV + WH CL+CA C Q L
Sbjct: 54 AVCXGCQRPISDRFLMRVN-ESSWHEECLQCAACQQAL---------------------- 90
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFC
Sbjct: 91 --------TTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFC 142
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEG----MDKSSNGENNN-NNTNINNNLHNLNNE 179
C VC +QL GDEF L+E L CK D+E + S E+++ + + + ++ +
Sbjct: 143 CCVCERQLRKGDEFVLKEGQLLCKGDYEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQ 202
Query: 180 GSNS 183
GS S
Sbjct: 203 GSQS 206
>gi|260794981|ref|XP_002592485.1| LIM class homeodomain transcription factor, apterous subclass
[Branchiostoma floridae]
gi|229277705|gb|EEN48496.1| LIM class homeodomain transcription factor, apterous subclass
[Branchiostoma floridae]
Length = 452
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 82/155 (52%), Gaps = 30/155 (19%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
+ + +C GCGG+I D+Y L +A D +WH CL+C C C +R
Sbjct: 54 EEKPGVCAGCGGRIVDRYYL-LAVDKQWHLHCLKC----------CECKLR--------- 93
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTK-CEKCNLNFKREDFVMRAKNKIYH 119
L+ TCF +DG YCK+DY R F K C +C+L + VMRA++ ++H
Sbjct: 94 ---------LESELTCFAKDGSIYCKQDYYRRFSVKRCARCHLGISASEMVMRARDLVFH 144
Query: 120 VQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
+ CF C C + L GD++ +R D ++C+ D+E +
Sbjct: 145 LNCFMCETCNRPLTTGDQYGMRGDTVYCRYDYETL 179
>gi|187171273|ref|NP_001035099.3| LIM/homeobox protein Lhx2 [Danio rerio]
Length = 427
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 75/147 (51%), Gaps = 30/147 (20%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R++LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 80 RVALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 114
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 115 ----KLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLN 170
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCK 148
CF C C K L GD F +++ ++C+
Sbjct: 171 CFTCTTCNKMLTTGDHFGMKDSLVYCR 197
>gi|68448499|ref|NP_001020339.1| LIM homeobox transcription factor 1, beta a [Danio rerio]
gi|62461839|gb|AAX83056.1| LIM homeodomain protein [Danio rerio]
gi|190337362|gb|AAI63321.1| LIM homeobox transcription factor 1, beta 2 [Danio rerio]
gi|190339774|gb|AAI63333.1| LIM homeobox transcription factor 1, beta 2 [Danio rerio]
Length = 373
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 87/177 (49%), Gaps = 31/177 (17%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S+C GC I D+++LR+ D WH CL+C+ C Q L
Sbjct: 29 SVCEGCHRPISDRFLLRMN-DSSWHEECLQCSVCQQLL---------------------- 65
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ RD K YCK DY +LF TKC C + VMRA +YH+ CFC
Sbjct: 66 --------TMSCYSRDHKLYCKHDYQQLFATKCSGCLEKISPTELVMRALESVYHLSCFC 117
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNNTNINNNLHNLNNEGS 181
C VC ++L GDEF L+E L CK D+E ++ + ++++ + + +L +G+
Sbjct: 118 CCVCERRLCKGDEFVLKEGQLLCKTDYEREKDLASPDLSDSDKSEDEDLDVKPEKGA 174
>gi|380027050|ref|XP_003697249.1| PREDICTED: protein apterous-like [Apis florea]
Length = 555
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 75/149 (50%), Gaps = 31/149 (20%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C GCG +I D++ L+ D WHAACL+C+ C
Sbjct: 185 VCAGCGLRISDRFYLQAV-DRRWHAACLQCSHC--------------------------- 216
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGT--KCEKCNLNFKREDFVMRAKNKIYHVQCF 123
Q LD TCF RDG YCK+DY R+FG+ +C +C+ + VMRA+ ++HV+CF
Sbjct: 217 -RQGLDGEVTCFSRDGNIYCKKDYYRMFGSMKRCARCHAAILASELVMRARELVFHVRCF 275
Query: 124 CCVVCGKQLVPGDEFALREDGLFCKDDHE 152
C C L GD F +R+ + C+ +E
Sbjct: 276 SCAACAVPLTKGDHFGMRDGAVLCRLHYE 304
>gi|344271900|ref|XP_003407775.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 2
[Loxodonta africana]
Length = 406
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 89/184 (48%), Gaps = 36/184 (19%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GC I D++++RV + WH CL+CA C Q L
Sbjct: 54 AVCEGCQRPISDRFLMRVN-ESSWHEECLQCAACQQAL---------------------- 90
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFC
Sbjct: 91 --------TTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFC 142
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEG----MDKSSNGENNN-NNTNINNNLHNLNNE 179
C VC +QL GDEF L+E L CK D+E + S E+++ + + + ++ +
Sbjct: 143 CCVCERQLRKGDEFVLKEGQLLCKGDYEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQ 202
Query: 180 GSNS 183
GS S
Sbjct: 203 GSQS 206
>gi|410979116|ref|XP_003995932.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 3
[Felis catus]
Length = 406
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 89/184 (48%), Gaps = 36/184 (19%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GC I D++++RV + WH CL+CA C Q L
Sbjct: 54 AVCEGCQRPISDRFLMRVN-ESSWHEECLQCAACQQAL---------------------- 90
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFC
Sbjct: 91 --------TTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFC 142
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEG----MDKSSNGENNN-NNTNINNNLHNLNNE 179
C VC +QL GDEF L+E L CK D+E + S E+++ + + + ++ +
Sbjct: 143 CCVCERQLRKGDEFVLKEGQLLCKGDYEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQ 202
Query: 180 GSNS 183
GS S
Sbjct: 203 GSQS 206
>gi|126306413|ref|XP_001367734.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Monodelphis
domestica]
gi|395531043|ref|XP_003767592.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Sarcophilus
harrisii]
Length = 388
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 58 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 92
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA+ +YH+
Sbjct: 93 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARESVYHLS 148
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F ++++ ++C+ E +
Sbjct: 149 CFTCTTCNKTLTTGDHFGMKDNLVYCRAHFETL 181
>gi|48375213|gb|AAT42259.1| LIM homeodomain protein Lmx1b.2 [Danio rerio]
Length = 375
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 87/177 (49%), Gaps = 31/177 (17%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S+C GC I D+++LR+ D WH CL+C+ C Q L
Sbjct: 31 SVCEGCHRPISDRFLLRMN-DSSWHEECLQCSVCQQLL---------------------- 67
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ RD K YCK DY +LF TKC C + VMRA +YH+ CFC
Sbjct: 68 --------TMSCYSRDHKLYCKHDYQQLFATKCSGCLEKISPTELVMRALESVYHLSCFC 119
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNNTNINNNLHNLNNEGS 181
C VC ++L GDEF L+E L CK D+E ++ + ++++ + + +L +G+
Sbjct: 120 CCVCERRLCKGDEFVLKEGQLLCKTDYEREKDLASPDLSDSDKSEDEDLDVKPEKGA 176
>gi|332220030|ref|XP_003259160.1| PREDICTED: LOW QUALITY PROTEIN: LIM homeobox transcription factor
1-alpha [Nomascus leucogenys]
Length = 368
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 75/148 (50%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S+C GC I D+++LR+ D WH C++CA C + L+
Sbjct: 33 SVCEGCQRVILDRFLLRLN-DSFWHEQCVQCASCKEPLE--------------------- 70
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
TCF RD K YCK DY +LF KC C +FVMRA+ +YH+ CFC
Sbjct: 71 ---------TTCFYRDKKLYCKYDYEKLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFC 121
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C VC +QL GDEF L+E L CK D+E
Sbjct: 122 CCVCERQLQKGDEFVLKEGQLLCKGDYE 149
>gi|292494913|ref|NP_001167617.1| LIM homeobox transcription factor 1-beta isoform 3 [Homo sapiens]
Length = 406
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 89/184 (48%), Gaps = 36/184 (19%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GC I D++++RV + WH CL+CA C Q L
Sbjct: 54 AVCEGCQRPISDRFLMRVN-ESSWHEECLQCAACQQAL---------------------- 90
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFC
Sbjct: 91 --------TTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFC 142
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEG----MDKSSNGENNN-NNTNINNNLHNLNNE 179
C VC +QL GDEF L+E L CK D+E + S E+++ + + + ++ +
Sbjct: 143 CCVCERQLRKGDEFVLKEGQLLCKGDYEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQ 202
Query: 180 GSNS 183
GS S
Sbjct: 203 GSQS 206
>gi|109109779|ref|XP_001096188.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Macaca mulatta]
Length = 402
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 83/185 (44%), Gaps = 34/185 (18%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ LC GC I D++IL+ D WH+ CL+C++CH L E C
Sbjct: 33 IPLCAGCDQHILDRFILKAL-DRHWHSKCLKCSDCHTPLAERC----------------- 74
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F R YCK D+ + FGTKC C L V RA++ +YH+ CF
Sbjct: 75 -------------FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCF 121
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHE-GMDKSSNGENNNNNTNIN-NNLHNLNNEG 180
CVVC +QL GDEF L ED L CK D+E + + T I L L +
Sbjct: 122 ACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKSAY 181
Query: 181 SNSGK 185
+ S K
Sbjct: 182 NTSPK 186
>gi|410921836|ref|XP_003974389.1| PREDICTED: LIM/homeobox protein Lhx9-like [Takifugu rubripes]
Length = 506
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 74/147 (50%), Gaps = 30/147 (20%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 176 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 210
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 211 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 266
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCK 148
CF C C K L GD F +++ ++C+
Sbjct: 267 CFTCTTCNKTLTTGDHFGMKDSLVYCR 293
>gi|403272543|ref|XP_003928115.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 1
[Saimiri boliviensis boliviensis]
gi|403272545|ref|XP_003928116.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 2
[Saimiri boliviensis boliviensis]
Length = 382
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 75/148 (50%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S+C GC I D+++LR+ D WH C++CA C + L+
Sbjct: 33 SVCEGCQRVILDRFLLRLN-DSFWHEQCVQCASCKEPLE--------------------- 70
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
TCF RD K YCK DY +LF KC C +FVMRA+ +YH+ CFC
Sbjct: 71 ---------TTCFYRDKKLYCKYDYEKLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFC 121
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C VC +QL GDEF L+E L CK D+E
Sbjct: 122 CCVCERQLQKGDEFVLKEGQLLCKGDYE 149
>gi|395506420|ref|XP_003757530.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Sarcophilus
harrisii]
Length = 403
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 85/188 (45%), Gaps = 34/188 (18%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
++ + LC GC I D++IL+V D WH+ CL+C++C L E C
Sbjct: 30 RKEIPLCAGCNQHIVDRFILKVL-DRHWHSKCLKCSDCQTPLAEKC-------------- 74
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
F R YCK D+ + FGTKC C V RA++ +YH+
Sbjct: 75 ----------------FSRGDGVYCKEDFFKRFGTKCAACQQGIPPTQVVRRAQDFVYHL 118
Query: 121 QCFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGMDK--SSNGENNNNNTNINNNLHNLN 177
CF CVVC +QL GDEF L ED L CK D+E + + + T L L
Sbjct: 119 HCFSCVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAESTAKRPRTTITAKQLETLK 178
Query: 178 NEGSNSGK 185
N +NS K
Sbjct: 179 NAYNNSPK 186
>gi|350404757|ref|XP_003487210.1| PREDICTED: protein apterous-like [Bombus impatiens]
Length = 550
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 76/149 (51%), Gaps = 31/149 (20%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C GCG +I D++ L+ D WHAACL+C+ C Q LD TCF RDG YC
Sbjct: 174 VCAGCGLRISDRFYLQAV-DRRWHAACLQCSHCRQGLDGEVTCFSRDGNIYC-------- 224
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGT--KCEKCNLNFKREDFVMRAKNKIYHVQCF 123
K+DY R+FG+ +C +C+ + VMRA++ ++HV+CF
Sbjct: 225 --------------------KKDYYRMFGSMKRCARCHAAILASELVMRARDLVFHVRCF 264
Query: 124 CCVVCGKQLVPGDEFALREDGLFCKDDHE 152
C C L GD F +R+ + C+ +E
Sbjct: 265 SCAACAVPLTKGDHFGMRDGAVLCRLHYE 293
>gi|292494911|ref|NP_002307.2| LIM homeobox transcription factor 1-beta isoform 1 [Homo sapiens]
gi|301761898|ref|XP_002916367.1| PREDICTED: LIM homeobox transcription factor 1-beta-like isoform 2
[Ailuropoda melanoleuca]
gi|344271898|ref|XP_003407774.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 1
[Loxodonta africana]
gi|306921455|dbj|BAJ17807.1| LIM homeobox transcription factor 1, beta [synthetic construct]
gi|387541732|gb|AFJ71493.1| LIM homeobox transcription factor 1-beta isoform 1 [Macaca mulatta]
Length = 395
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 89/184 (48%), Gaps = 36/184 (19%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GC I D++++RV + WH CL+CA C Q L
Sbjct: 54 AVCEGCQRPISDRFLMRVN-ESSWHEECLQCAACQQAL---------------------- 90
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFC
Sbjct: 91 --------TTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFC 142
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEG----MDKSSNGENNN-NNTNINNNLHNLNNE 179
C VC +QL GDEF L+E L CK D+E + S E+++ + + + ++ +
Sbjct: 143 CCVCERQLRKGDEFVLKEGQLLCKGDYEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQ 202
Query: 180 GSNS 183
GS S
Sbjct: 203 GSQS 206
>gi|224493175|sp|Q90881.2|LHX9_CHICK RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
Length = 397
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 67 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 101
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA+ +YH+
Sbjct: 102 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARESVYHLS 157
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F ++++ ++C+ E +
Sbjct: 158 CFTCTTCNKTLTTGDHFGMKDNLVYCRAHFESL 190
>gi|126302627|ref|XP_001366305.1| PREDICTED: LIM/homeobox protein Lhx3-like isoform 2 [Monodelphis
domestica]
Length = 403
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 85/188 (45%), Gaps = 34/188 (18%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
++ + LC GC I D++IL+V D WH+ CL+C++C L E C
Sbjct: 30 RKEIPLCAGCNQHIVDRFILKVL-DRHWHSKCLKCSDCQTPLAEKC-------------- 74
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
F R YCK D+ + FGTKC C V RA++ +YH+
Sbjct: 75 ----------------FSRGDGVYCKEDFFKRFGTKCAACQQGIPPTQVVRRAQDFVYHL 118
Query: 121 QCFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGMDK--SSNGENNNNNTNINNNLHNLN 177
CF CVVC +QL GDEF L ED L CK D+E + + + T L L
Sbjct: 119 HCFSCVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAESTAKRPRTTITAKQLETLK 178
Query: 178 NEGSNSGK 185
N +NS K
Sbjct: 179 NAYNNSPK 186
>gi|417410318|gb|JAA51634.1| Putative lim homeobox transcription factor 1-beta, partial
[Desmodus rotundus]
Length = 391
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 89/184 (48%), Gaps = 36/184 (19%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GC I D++++RV + WH CL+CA C Q L
Sbjct: 50 AVCEGCQRPISDRFLMRVN-ESSWHEECLQCAACQQAL---------------------- 86
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFC
Sbjct: 87 --------TTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFC 138
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEG----MDKSSNGENNN-NNTNINNNLHNLNNE 179
C VC +QL GDEF L+E L CK D+E + S E+++ + + + ++ +
Sbjct: 139 CCVCERQLRKGDEFVLKEGQLLCKGDYEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQ 198
Query: 180 GSNS 183
GS S
Sbjct: 199 GSQS 202
>gi|326205258|dbj|BAJ84011.1| LIM/homeobox protein Lhx3 [Homo sapiens]
Length = 386
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 84/185 (45%), Gaps = 34/185 (18%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ LC GC I D++IL+ A D WH+ CL+C++CH L E C
Sbjct: 17 IPLCAGCDQHILDRFILK-ALDRHWHSKCLKCSDCHTPLAERC----------------- 58
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F R YCK D+ + FGTKC C L V RA++ +YH+ CF
Sbjct: 59 -------------FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCF 105
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHE-GMDKSSNGENNNNNTNIN-NNLHNLNNEG 180
CVVC +QL GDEF L ED L CK D+E + + T I L L +
Sbjct: 106 ACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKSAY 165
Query: 181 SNSGK 185
+ S K
Sbjct: 166 NTSPK 170
>gi|301761900|ref|XP_002916368.1| PREDICTED: LIM homeobox transcription factor 1-beta-like isoform 3
[Ailuropoda melanoleuca]
Length = 406
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 89/184 (48%), Gaps = 36/184 (19%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GC I D++++RV + WH CL+CA C Q L
Sbjct: 54 AVCEGCQRPISDRFLMRVN-ESSWHEECLQCAACQQAL---------------------- 90
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFC
Sbjct: 91 --------TTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFC 142
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEG----MDKSSNGENNN-NNTNINNNLHNLNNE 179
C VC +QL GDEF L+E L CK D+E + S E+++ + + + ++ +
Sbjct: 143 CCVCERQLRKGDEFVLKEGQLLCKGDYEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQ 202
Query: 180 GSNS 183
GS S
Sbjct: 203 GSQS 206
>gi|255759880|ref|NP_034855.2| LIM homeobox transcription factor 1-beta [Mus musculus]
gi|109112190|ref|XP_001097412.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 2
[Macaca mulatta]
gi|297685370|ref|XP_002820263.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 1
[Pongo abelii]
gi|395824199|ref|XP_003785358.1| PREDICTED: LIM homeobox transcription factor 1-beta [Otolemur
garnettii]
gi|403299811|ref|XP_003940668.1| PREDICTED: LIM homeobox transcription factor 1-beta [Saimiri
boliviensis boliviensis]
gi|410979114|ref|XP_003995931.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 2
[Felis catus]
gi|341940912|sp|O88609.2|LMX1B_MOUSE RecName: Full=LIM homeobox transcription factor 1-beta; AltName:
Full=LIM/homeobox protein 1.2; Short=LMX-1.2; AltName:
Full=LIM/homeobox protein LMX1B
gi|3132909|gb|AAC39738.1| LIM homeodomain protein LMX1B [Homo sapiens]
gi|47479658|gb|AAH69601.1| LIM homeobox transcription factor 1, beta [Homo sapiens]
gi|85567565|gb|AAI12121.1| LIM homeobox transcription factor 1, beta [Homo sapiens]
gi|109731283|gb|AAI13492.1| LIM homeobox transcription factor 1, beta [Homo sapiens]
gi|111600533|gb|AAI19170.1| LIM homeobox transcription factor 1 beta [Mus musculus]
gi|116138517|gb|AAI25470.1| LIM homeobox transcription factor 1 beta [Mus musculus]
gi|119608048|gb|EAW87642.1| LIM homeobox transcription factor 1, beta, isoform CRA_b [Homo
sapiens]
gi|148676655|gb|EDL08602.1| LIM homeobox transcription factor 1 beta [Mus musculus]
gi|312150934|gb|ADQ31979.1| LIM homeobox transcription factor 1, beta [synthetic construct]
gi|313882992|gb|ADR82982.1| LIM homeobox transcription factor 1, beta (LMX1B) [synthetic
construct]
Length = 372
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 89/184 (48%), Gaps = 36/184 (19%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GC I D++++RV + WH CL+CA C Q L
Sbjct: 31 AVCEGCQRPISDRFLMRVN-ESSWHEECLQCAACQQAL---------------------- 67
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFC
Sbjct: 68 --------TTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFC 119
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEG----MDKSSNGENNN-NNTNINNNLHNLNNE 179
C VC +QL GDEF L+E L CK D+E + S E+++ + + + ++ +
Sbjct: 120 CCVCERQLRKGDEFVLKEGQLLCKGDYEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQ 179
Query: 180 GSNS 183
GS S
Sbjct: 180 GSQS 183
>gi|395825137|ref|XP_003785798.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Otolemur
garnettii]
Length = 382
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 75/148 (50%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S+C GC I D+++LR+ D WH C++CA C + L+
Sbjct: 33 SVCEGCQRVILDRFLLRLN-DSFWHEQCVQCASCKEPLE--------------------- 70
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
TCF RD K YCK DY +LF KC C +FVMRA+ +YH+ CFC
Sbjct: 71 ---------TTCFYRDKKLYCKYDYEKLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFC 121
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C VC +QL GDEF L+E L CK D+E
Sbjct: 122 CCVCERQLQKGDEFVLKEGQLLCKGDYE 149
>gi|297271296|ref|XP_002800229.1| PREDICTED: LIM homeobox transcription factor 1-beta [Macaca
mulatta]
Length = 385
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 89/184 (48%), Gaps = 36/184 (19%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GC I D++++RV + WH CL+CA C Q L
Sbjct: 31 AVCEGCQRPISDRFLMRVN-ESSWHEECLQCAACQQAL---------------------- 67
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFC
Sbjct: 68 --------TTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFC 119
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEG----MDKSSNGENNN-NNTNINNNLHNLNNE 179
C VC +QL GDEF L+E L CK D+E + S E+++ + + + ++ +
Sbjct: 120 CCVCERQLRKGDEFVLKEGQLLCKGDYEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQ 179
Query: 180 GSNS 183
GS S
Sbjct: 180 GSQS 183
>gi|219520075|gb|AAI43802.1| LMX1B protein [Homo sapiens]
Length = 383
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 89/184 (48%), Gaps = 36/184 (19%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GC I D++++RV + WH CL+CA C Q L
Sbjct: 31 AVCEGCQRPISDRFLMRVN-ESSWHEECLQCAACQQAL---------------------- 67
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFC
Sbjct: 68 --------TTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFC 119
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEG----MDKSSNGENNN-NNTNINNNLHNLNNE 179
C VC +QL GDEF L+E L CK D+E + S E+++ + + + ++ +
Sbjct: 120 CCVCERQLRKGDEFVLKEGQLLCKGDYEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQ 179
Query: 180 GSNS 183
GS S
Sbjct: 180 GSQS 183
>gi|345805844|ref|XP_003435360.1| PREDICTED: LIM homeobox transcription factor 1-beta [Canis lupus
familiaris]
Length = 487
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 89/184 (48%), Gaps = 36/184 (19%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GC I D++++RV + WH CL+CA C Q L
Sbjct: 139 AVCEGCQRPISDRFLMRVN-ESSWHEECLQCAACQQAL---------------------- 175
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFC
Sbjct: 176 --------TTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFC 227
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEG----MDKSSNGENNN-NNTNINNNLHNLNNE 179
C VC +QL GDEF L+E L CK D+E + S E+++ + + + ++ +
Sbjct: 228 CCVCERQLRKGDEFVLKEGQLLCKGDYEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQ 287
Query: 180 GSNS 183
GS S
Sbjct: 288 GSQS 291
>gi|297685372|ref|XP_002820264.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 2
[Pongo abelii]
Length = 383
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 89/184 (48%), Gaps = 36/184 (19%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GC I D++++RV + WH CL+CA C Q L
Sbjct: 31 AVCEGCQRPISDRFLMRVN-ESSWHEECLQCAACQQAL---------------------- 67
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFC
Sbjct: 68 --------TTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFC 119
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEG----MDKSSNGENNN-NNTNINNNLHNLNNE 179
C VC +QL GDEF L+E L CK D+E + S E+++ + + + ++ +
Sbjct: 120 CCVCERQLRKGDEFVLKEGQLLCKGDYEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQ 179
Query: 180 GSNS 183
GS S
Sbjct: 180 GSQS 183
>gi|402896087|ref|XP_003911139.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Papio anubis]
Length = 402
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 84/185 (45%), Gaps = 34/185 (18%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ LC GC I D++IL+ A D WH+ CL+C++CH L E C
Sbjct: 33 IPLCAGCDQHILDRFILK-ALDRHWHSKCLKCSDCHTPLAERC----------------- 74
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F R YCK D+ + FGTKC C L V RA++ +YH+ CF
Sbjct: 75 -------------FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCF 121
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHE-GMDKSSNGENNNNNTNIN-NNLHNLNNEG 180
CVVC +QL GDEF L ED L CK D+E + + T I L L +
Sbjct: 122 ACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKSAY 181
Query: 181 SNSGK 185
+ S K
Sbjct: 182 NTSPK 186
>gi|28893581|ref|NP_796372.1| LIM homeobox transcription factor 1-alpha [Homo sapiens]
gi|291327513|ref|NP_001167540.1| LIM homeobox transcription factor 1-alpha [Homo sapiens]
gi|109019319|ref|XP_001084612.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 2
[Macaca mulatta]
gi|109019321|ref|XP_001084727.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 3
[Macaca mulatta]
gi|114561083|ref|XP_001174539.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 2 [Pan
troglodytes]
gi|114561085|ref|XP_001174542.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 3 [Pan
troglodytes]
gi|296229940|ref|XP_002760489.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Callithrix
jacchus]
gi|397508364|ref|XP_003824628.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 1 [Pan
paniscus]
gi|397508366|ref|XP_003824629.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 2 [Pan
paniscus]
gi|402858034|ref|XP_003893535.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 1
[Papio anubis]
gi|402858036|ref|XP_003893536.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 2
[Papio anubis]
gi|426332555|ref|XP_004027869.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 1
[Gorilla gorilla gorilla]
gi|426332557|ref|XP_004027870.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 2
[Gorilla gorilla gorilla]
gi|27923801|sp|Q8TE12.1|LMX1A_HUMAN RecName: Full=LIM homeobox transcription factor 1-alpha; AltName:
Full=LIM/homeobox protein 1.1; Short=LMX-1.1; AltName:
Full=LIM/homeobox protein LMX1A
gi|19879681|gb|AAL82892.1| LIM homeobox transcription factor 1 alpha [Homo sapiens]
gi|119611150|gb|EAW90744.1| LIM homeobox transcription factor 1, alpha, isoform CRA_b [Homo
sapiens]
gi|182887815|gb|AAI60062.1| LIM homeobox transcription factor 1, alpha [synthetic construct]
gi|193785405|dbj|BAG54558.1| unnamed protein product [Homo sapiens]
gi|208966672|dbj|BAG73350.1| LIM homeobox transcription factor 1, alpha [synthetic construct]
gi|355558990|gb|EHH15770.1| hypothetical protein EGK_01906 [Macaca mulatta]
gi|355746154|gb|EHH50779.1| hypothetical protein EGM_01656 [Macaca fascicularis]
Length = 382
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 75/148 (50%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S+C GC I D+++LR+ D WH C++CA C + L+
Sbjct: 33 SVCEGCQRVILDRFLLRLN-DSFWHEQCVQCASCKEPLE--------------------- 70
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
TCF RD K YCK DY +LF KC C +FVMRA+ +YH+ CFC
Sbjct: 71 ---------TTCFYRDKKLYCKYDYEKLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFC 121
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C VC +QL GDEF L+E L CK D+E
Sbjct: 122 CCVCERQLQKGDEFVLKEGQLLCKGDYE 149
>gi|296191167|ref|XP_002743507.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Callithrix jacchus]
Length = 402
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 84/185 (45%), Gaps = 34/185 (18%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ LC GC I D++IL+ A D WH+ CL+C++CH L E C
Sbjct: 33 IPLCAGCDQHILDRFILK-ALDRHWHSKCLKCSDCHTPLAERC----------------- 74
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F R YCK D+ + FGTKC C L V RA++ +YH+ CF
Sbjct: 75 -------------FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCF 121
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHE-GMDKSSNGENNNNNTNIN-NNLHNLNNEG 180
CVVC +QL GDEF L ED L CK D+E + + T I L L +
Sbjct: 122 ACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKSAY 181
Query: 181 SNSGK 185
+ S K
Sbjct: 182 NTSPK 186
>gi|143347140|gb|ABO93218.1| Lhx2 [Platynereis dumerilii]
Length = 280
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 74/148 (50%), Gaps = 28/148 (18%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
+ C CGG+I D+Y L +A D +WH CL+CA+CH LD TCF +DG YCK DY
Sbjct: 47 APCAACGGKIIDRYYL-LAVDKQWHINCLKCADCHLPLDSELTCFAKDGDIYCKEDY--- 102
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
Y R +C +C+L + VMRA+ ++H+ CF
Sbjct: 103 ------------------------YRRFAAKRCSRCHLAISANELVMRAREHVFHIGCFT 138
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C C K L GD F +++ ++C+ +E
Sbjct: 139 CASCAKALTTGDYFGMKDHLIYCRSHYE 166
>gi|3348118|gb|AAC27793.1| LIM homeodomain protein [Mus musculus]
Length = 372
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 89/184 (48%), Gaps = 36/184 (19%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GC I D++++RV + WH CL+CA C Q L
Sbjct: 31 AVCEGCQRPISDRFLMRVN-ESSWHEECLQCAACQQAL---------------------- 67
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFC
Sbjct: 68 --------TTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFC 119
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEG----MDKSSNGENNN-NNTNINNNLHNLNNE 179
C VC +QL GDEF L+E L CK D+E + S E+++ + + + ++ +
Sbjct: 120 CCVCERQLRKGDEFVLKEGQLLCKGDYEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQ 179
Query: 180 GSNS 183
GS S
Sbjct: 180 GSQS 183
>gi|126306417|ref|XP_001367814.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 3 [Monodelphis
domestica]
Length = 380
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 48 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 82
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA+ +YH+
Sbjct: 83 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARESVYHLS 138
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F ++++ ++C+ E +
Sbjct: 139 CFTCTTCNKTLTTGDHFGMKDNLVYCRAHFETL 171
>gi|395531047|ref|XP_003767594.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 3 [Sarcophilus
harrisii]
Length = 380
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 48 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 82
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA+ +YH+
Sbjct: 83 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARESVYHLS 138
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F ++++ ++C+ E +
Sbjct: 139 CFTCTTCNKTLTTGDHFGMKDNLVYCRAHFETL 171
>gi|4406518|gb|AAD20013.1| LIM-homeodomain protein HLHX2 [Homo sapiens]
Length = 389
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 32 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 66
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 67 ----KLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLN 122
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 123 CFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEAL 155
>gi|344243883|gb|EGV99986.1| LIM/homeobox protein Lhx2 [Cricetulus griseus]
Length = 385
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 32 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 66
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 67 ----KLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLN 122
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 123 CFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEAL 155
>gi|319740961|gb|ADV69000.1| lim-homeobox 2/9 [Patiria miniata]
Length = 304
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 86/189 (45%), Gaps = 38/189 (20%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K + +C GCGG I D+Y L +A D +WH CLRC EC LD TCF +DG
Sbjct: 42 KSKACMCAGCGGPIQDRYYL-LAADQQWHTECLRCCECKVTLDNELTCFAKDG------- 93
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYH 119
YCK Y R FG KC +C + VMRA++ +YH
Sbjct: 94 ---------------------GIYCKEHYFRRFGVKKCARCGTGIAAHEMVMRARSLVYH 132
Query: 120 VQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSS-------NGENNNNNTNINNN 172
+ CF C C L GD + +R+ ++C+ +E S GEN + T+ +
Sbjct: 133 LSCFTCSACSMALTTGDYYGMRDTQVYCRLHYESTALSPAEQHRRHQGENQPHLTHQPHP 192
Query: 173 LHN-LNNEG 180
H L+++G
Sbjct: 193 AHQPLHSQG 201
>gi|385862228|ref|NP_001245353.1| LIM homeobox transcription factor 1-beta [Sus scrofa]
Length = 379
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 89/184 (48%), Gaps = 36/184 (19%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GC I D++++RV + WH CL+CA C Q L
Sbjct: 31 AVCEGCQRPISDRFLMRVN-ESSWHEECLQCAACQQAL---------------------- 67
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFC
Sbjct: 68 --------TTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFC 119
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEG----MDKSSNGENNN-NNTNINNNLHNLNNE 179
C VC +QL GDEF L+E L CK D+E + S E+++ + + + ++ +
Sbjct: 120 CCVCERQLRKGDEFVLKEGQLLCKGDYEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQ 179
Query: 180 GSNS 183
GS S
Sbjct: 180 GSQS 183
>gi|344271943|ref|XP_003407796.1| PREDICTED: LIM/homeobox protein Lhx2 [Loxodonta africana]
Length = 365
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 8 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 42
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 43 ----KLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLN 98
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 99 CFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEAL 131
>gi|7657303|ref|NP_055379.1| LIM/homeobox protein Lhx3 isoform b [Homo sapiens]
gi|7110145|gb|AAF36809.1|AF156889_1 LIM homeobox protein 3 isoform b [Homo sapiens]
gi|119608611|gb|EAW88205.1| LIM homeobox 3, isoform CRA_a [Homo sapiens]
gi|157169604|gb|AAI52819.1| LIM homeobox 3 [synthetic construct]
gi|162318656|gb|AAI56736.1| LIM homeobox 3 [synthetic construct]
gi|307685965|dbj|BAJ20913.1| LIM homeobox 3 [synthetic construct]
gi|326205262|dbj|BAJ84013.1| LIM/homeobox protein Lhx3 [Homo sapiens]
Length = 402
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 84/185 (45%), Gaps = 34/185 (18%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ LC GC I D++IL+ A D WH+ CL+C++CH L E C
Sbjct: 33 IPLCAGCDQHILDRFILK-ALDRHWHSKCLKCSDCHTPLAERC----------------- 74
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F R YCK D+ + FGTKC C L V RA++ +YH+ CF
Sbjct: 75 -------------FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCF 121
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHE-GMDKSSNGENNNNNTNIN-NNLHNLNNEG 180
CVVC +QL GDEF L ED L CK D+E + + T I L L +
Sbjct: 122 ACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKSAY 181
Query: 181 SNSGK 185
+ S K
Sbjct: 182 NTSPK 186
>gi|432095435|gb|ELK26634.1| LIM/homeobox protein Lhx2 [Myotis davidii]
Length = 389
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 32 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 66
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 67 ----KLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLN 122
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 123 CFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEAL 155
>gi|297685716|ref|XP_002820429.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Pongo abelii]
Length = 402
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 84/185 (45%), Gaps = 34/185 (18%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ LC GC I D++IL+ A D WH+ CL+C++CH L E C
Sbjct: 33 IPLCAGCDQHILDRFILK-ALDRHWHSKCLKCSDCHTPLAERC----------------- 74
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F R YCK D+ + FGTKC C L V RA++ +YH+ CF
Sbjct: 75 -------------FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCF 121
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHE-GMDKSSNGENNNNNTNIN-NNLHNLNNEG 180
CVVC +QL GDEF L ED L CK D+E + + T I L L +
Sbjct: 122 ACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKSAY 181
Query: 181 SNSGK 185
+ S K
Sbjct: 182 NTSPK 186
>gi|114626624|ref|XP_528427.2| PREDICTED: LIM/homeobox protein Lhx2 [Pan troglodytes]
Length = 365
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 8 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 42
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 43 ----KLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLN 98
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 99 CFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEAL 131
>gi|1145814|gb|AAA84995.1| LIM homeodomain protein [Gallus gallus]
Length = 377
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 74/148 (50%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GC I D++++RV + WH CL+CA C Q L
Sbjct: 31 AVCEGCQRPISDRFLMRVN-ESSWHEECLQCAVCQQAL---------------------- 67
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFC
Sbjct: 68 --------TTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLSCFC 119
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C VC +QL GDEF L+E L CK D+E
Sbjct: 120 CCVCERQLRKGDEFVLKEGQLLCKSDYE 147
>gi|296190791|ref|XP_002743350.1| PREDICTED: LIM/homeobox protein Lhx2 [Callithrix jacchus]
Length = 365
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 8 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 42
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 43 ----KLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLN 98
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 99 CFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEAL 131
>gi|47480835|gb|AAH69588.1| LMX1B protein [Homo sapiens]
Length = 377
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 89/184 (48%), Gaps = 36/184 (19%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GC I D++++RV + WH CL+CA C Q L
Sbjct: 29 AVCEGCQRPISDRFLMRVN-ESSWHEECLQCAACQQAL---------------------- 65
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFC
Sbjct: 66 --------TTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFC 117
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEG----MDKSSNGENNN-NNTNINNNLHNLNNE 179
C VC +QL GDEF L+E L CK D+E + S E+++ + + + ++ +
Sbjct: 118 CCVCERQLRKGDEFVLKEGQLLCKGDYEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQ 177
Query: 180 GSNS 183
GS S
Sbjct: 178 GSQS 181
>gi|410979118|ref|XP_003995933.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 4
[Felis catus]
Length = 382
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 89/184 (48%), Gaps = 36/184 (19%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GC I D++++RV + WH CL+CA C Q L
Sbjct: 31 AVCEGCQRPISDRFLMRVN-ESSWHEECLQCAACQQAL---------------------- 67
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFC
Sbjct: 68 --------TTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFC 119
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEG----MDKSSNGENNN-NNTNINNNLHNLNNE 179
C VC +QL GDEF L+E L CK D+E + S E+++ + + + ++ +
Sbjct: 120 CCVCERQLRKGDEFVLKEGQLLCKGDYEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQ 179
Query: 180 GSNS 183
GS S
Sbjct: 180 GSQS 183
>gi|123907024|sp|Q1LWV4.1|LHX9_DANRE RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
gi|94732381|emb|CAK04966.1| novel protein similar to vertebrate LIM homeobox 9 (LHX9) [Danio
rerio]
gi|190339118|gb|AAI63023.1| Lhx9 protein [Danio rerio]
gi|190339147|gb|AAI63060.1| Lhx9 protein [Danio rerio]
gi|190339149|gb|AAI63073.1| Lhx9 protein [Danio rerio]
Length = 396
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 77/153 (50%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 67 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 101
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 102 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 157
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F ++++ ++C+ E +
Sbjct: 158 CFTCTTCNKTLTTGDHFGMKDNLVYCRVHFETL 190
>gi|395505659|ref|XP_003757157.1| PREDICTED: LIM/homeobox protein Lhx2 [Sarcophilus harrisii]
Length = 408
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 49 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 83
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 84 ----KLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLN 139
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 140 CFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEAL 172
>gi|301605176|ref|XP_002932201.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 2 [Xenopus
(Silurana) tropicalis]
Length = 398
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 74/147 (50%), Gaps = 30/147 (20%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 68 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 102
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA+ +YH+
Sbjct: 103 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARESVYHLS 158
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCK 148
CF C C K L GD F ++E+ ++C+
Sbjct: 159 CFTCTTCNKTLSTGDHFGMKENLVYCR 185
>gi|6754538|ref|NP_034840.1| LIM/homeobox protein Lhx2 [Mus musculus]
gi|157817308|ref|NP_001100041.1| LIM/homeobox protein Lhx2 [Rattus norvegicus]
gi|8134552|sp|Q9Z0S2.1|LHX2_MOUSE RecName: Full=LIM/homeobox protein Lhx2; Short=Homeobox protein
LH-2; Short=LIM homeobox protein 2
gi|4406516|gb|AAD20012.1| LIM-homeodomain protein MLHX2 [Mus musculus]
gi|26343551|dbj|BAC35432.1| unnamed protein product [Mus musculus]
gi|33416474|gb|AAH55741.1| LIM homeobox protein 2 [Mus musculus]
gi|149047902|gb|EDM00518.1| LIM homeobox protein 2 (predicted) [Rattus norvegicus]
Length = 406
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 49 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 83
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 84 ----KLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLN 139
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 140 CFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEAL 172
>gi|426223060|ref|XP_004005697.1| PREDICTED: LIM/homeobox protein Lhx2 [Ovis aries]
Length = 404
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 49 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 83
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 84 ----KLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLN 139
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 140 CFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEAL 172
>gi|417410392|gb|JAA51670.1| Putative lim homeobox transcription factor 1-beta, partial
[Desmodus rotundus]
Length = 398
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 89/184 (48%), Gaps = 36/184 (19%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GC I D++++RV + WH CL+CA C Q L
Sbjct: 50 AVCEGCQRPISDRFLMRVN-ESSWHEECLQCAACQQAL---------------------- 86
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFC
Sbjct: 87 --------TTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFC 138
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEG----MDKSSNGENNN-NNTNINNNLHNLNNE 179
C VC +QL GDEF L+E L CK D+E + S E+++ + + + ++ +
Sbjct: 139 CCVCERQLRKGDEFVLKEGQLLCKGDYEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQ 198
Query: 180 GSNS 183
GS S
Sbjct: 199 GSQS 202
>gi|395844276|ref|XP_003794888.1| PREDICTED: LIM/homeobox protein Lhx3 [Otolemur garnettii]
Length = 402
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 84/185 (45%), Gaps = 34/185 (18%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ LC GC I D++IL+ A D WH+ CL+C++CH L E C
Sbjct: 33 VPLCAGCDQHILDRFILK-ALDRHWHSKCLKCSDCHAPLAERC----------------- 74
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F R YCK D+ + FGTKC C L V RA++ +YH+ CF
Sbjct: 75 -------------FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCF 121
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHE-GMDKSSNGENNNNNTNIN-NNLHNLNNEG 180
CVVC +QL GDEF L ED L CK D+E + + T I L L +
Sbjct: 122 ACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKSAY 181
Query: 181 SNSGK 185
+ S K
Sbjct: 182 NTSPK 186
>gi|391346181|ref|XP_003747357.1| PREDICTED: LIM homeobox transcription factor 1-beta.1-like
[Metaseiulus occidentalis]
Length = 434
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 76/150 (50%), Gaps = 31/150 (20%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
RL +C GC I D+YI++V + WH +CL C+ CHQ L
Sbjct: 55 RLEVCAGCERPIVDRYIMKVR-ESSWHESCLICSVCHQHL-------------------- 93
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQC 122
+C+ R+ + +CK DY RLFG KC C + + VM+A +++YH+ C
Sbjct: 94 ----------ATSCYSRERRIFCKNDYDRLFGAKCAACTGSIAPAELVMKALDQVYHLSC 143
Query: 123 FCCVVCGKQLVPGDEFALREDGLFCKDDHE 152
F C CG+QL GDE+ LR L+C+ D E
Sbjct: 144 FLCCTCGRQLQRGDEYVLRNGRLYCRQDFE 173
>gi|345132129|gb|AEN75257.1| apterous [Neanthes arenaceodentata]
Length = 420
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 74/146 (50%), Gaps = 28/146 (19%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCGG+I D+Y L +A D +WH CL+CA+CH LD TCF +DG+ +CK DY
Sbjct: 61 CAGCGGKIIDRYYL-LAVDKQWHINCLKCADCHLPLDSELTCFAKDGEIFCKEDY----- 114
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
Y R +C +C+ + VMRA+ ++H+ CF C
Sbjct: 115 ----------------------YRRFAVKRCSRCHQAISANELVMRAREHVFHIGCFTCA 152
Query: 127 VCGKQLVPGDEFALREDGLFCKDDHE 152
C K L GD F +++ ++C+ +E
Sbjct: 153 SCSKALTTGDYFGMKDHLIYCRSHYE 178
>gi|355567447|gb|EHH23788.1| LIM/homeobox protein Lhx2 [Macaca mulatta]
Length = 406
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 49 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 83
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 84 ----KLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLN 139
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 140 CFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEAL 172
>gi|224073927|ref|XP_002191376.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Taeniopygia
guttata]
Length = 436
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 75/147 (51%), Gaps = 30/147 (20%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 86 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 120
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 121 ----KLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLN 176
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCK 148
CF C C K L GD F ++++ ++C+
Sbjct: 177 CFTCTTCNKMLTTGDHFGMKDNLVYCR 203
>gi|449478340|ref|XP_004175607.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Taeniopygia
guttata]
Length = 399
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 75/147 (51%), Gaps = 30/147 (20%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 49 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 83
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 84 ----KLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLN 139
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCK 148
CF C C K L GD F ++++ ++C+
Sbjct: 140 CFTCTTCNKMLTTGDHFGMKDNLVYCR 166
>gi|432854592|ref|XP_004067977.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Oryzias latipes]
Length = 380
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 74/147 (50%), Gaps = 30/147 (20%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 48 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 82
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 83 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 138
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCK 148
CF C C K L GD F +++ ++C+
Sbjct: 139 CFTCTTCNKTLTTGDHFGMKDSLVYCR 165
>gi|45382441|ref|NP_990220.1| LIM/homeobox protein Lhx2 [Gallus gallus]
gi|2340819|dbj|BAA21846.1| LIM homeodomain [Gallus gallus]
Length = 400
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 75/147 (51%), Gaps = 30/147 (20%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 50 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 84
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 85 ----KLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLN 140
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCK 148
CF C C K L GD F ++++ ++C+
Sbjct: 141 CFTCTTCNKMLTTGDHFGMKDNLVYCR 167
>gi|292494915|ref|NP_001167618.1| LIM homeobox transcription factor 1-beta isoform 2 [Homo sapiens]
gi|301761896|ref|XP_002916366.1| PREDICTED: LIM homeobox transcription factor 1-beta-like isoform 1
[Ailuropoda melanoleuca]
gi|344271902|ref|XP_003407776.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 3
[Loxodonta africana]
gi|410979112|ref|XP_003995930.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 1
[Felis catus]
gi|281340079|gb|EFB15663.1| hypothetical protein PANDA_004429 [Ailuropoda melanoleuca]
Length = 402
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 89/184 (48%), Gaps = 36/184 (19%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GC I D++++RV + WH CL+CA C Q L
Sbjct: 54 AVCEGCQRPISDRFLMRVN-ESSWHEECLQCAACQQAL---------------------- 90
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFC
Sbjct: 91 --------TTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFC 142
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEG----MDKSSNGENNN-NNTNINNNLHNLNNE 179
C VC +QL GDEF L+E L CK D+E + S E+++ + + + ++ +
Sbjct: 143 CCVCERQLRKGDEFVLKEGQLLCKGDYEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQ 202
Query: 180 GSNS 183
GS S
Sbjct: 203 GSQS 206
>gi|8247930|sp|O60663.2|LMX1B_HUMAN RecName: Full=LIM homeobox transcription factor 1-beta; AltName:
Full=LIM/homeobox protein 1.2; Short=LMX-1.2; AltName:
Full=LIM/homeobox protein LMX1B
gi|3335524|gb|AAC27294.1| LIM homeodomain protein [Homo sapiens]
gi|119608047|gb|EAW87641.1| LIM homeobox transcription factor 1, beta, isoform CRA_a [Homo
sapiens]
Length = 379
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 89/184 (48%), Gaps = 36/184 (19%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GC I D++++RV + WH CL+CA C Q L
Sbjct: 31 AVCEGCQRPISDRFLMRVN-ESSWHEECLQCAACQQAL---------------------- 67
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFC
Sbjct: 68 --------TTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFC 119
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEG----MDKSSNGENNN-NNTNINNNLHNLNNE 179
C VC +QL GDEF L+E L CK D+E + S E+++ + + + ++ +
Sbjct: 120 CCVCERQLRKGDEFVLKEGQLLCKGDYEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQ 179
Query: 180 GSNS 183
GS S
Sbjct: 180 GSQS 183
>gi|281427312|ref|NP_001163990.1| LIM/homeobox protein Lhx2 [Sus scrofa]
gi|300794175|ref|NP_001178104.1| LIM/homeobox protein Lhx2 [Bos taurus]
gi|239937382|dbj|BAH79127.1| LIM homeobox protein 2 [Sus scrofa]
gi|296482193|tpg|DAA24308.1| TPA: LIM homeobox protein 2-like [Bos taurus]
Length = 406
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 49 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 83
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 84 ----KLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLN 139
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 140 CFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEAL 172
>gi|547852|sp|P36198.1|LHX2_RAT RecName: Full=LIM/homeobox protein Lhx2; Short=Homeobox protein
LH-2; Short=LIM homeobox protein 2
Length = 426
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 48 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 82
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 83 ----KLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISESEMVMRARDLVYHLN 138
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 139 CFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEAL 171
>gi|387763115|ref|NP_001248721.1| LIM/homeobox protein Lhx2 [Macaca mulatta]
gi|402896424|ref|XP_003911300.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Papio anubis]
gi|380818036|gb|AFE80892.1| LIM/homeobox protein Lhx2 [Macaca mulatta]
Length = 406
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 49 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 83
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 84 ----KLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLN 139
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 140 CFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEAL 172
>gi|432854590|ref|XP_004067976.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Oryzias latipes]
Length = 378
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 74/147 (50%), Gaps = 30/147 (20%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 48 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 82
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 83 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 138
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCK 148
CF C C K L GD F +++ ++C+
Sbjct: 139 CFTCTTCNKTLTTGDHFGMKDSLVYCR 165
>gi|301769255|ref|XP_002920044.1| PREDICTED: LIM/homeobox protein Lhx2-like isoform 1 [Ailuropoda
melanoleuca]
gi|345806102|ref|XP_863668.2| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Canis lupus
familiaris]
gi|281350174|gb|EFB25758.1| hypothetical protein PANDA_008723 [Ailuropoda melanoleuca]
Length = 406
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 49 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 83
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 84 ----KLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLN 139
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 140 CFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEAL 172
>gi|410986202|ref|XP_003999401.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Felis catus]
Length = 388
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 58 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 92
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 93 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 148
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 149 CFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETL 181
>gi|348578262|ref|XP_003474902.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 2 [Cavia
porcellus]
Length = 388
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 58 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 92
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 93 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 148
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 149 CFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETL 181
>gi|291408369|ref|XP_002720520.1| PREDICTED: LIM homeobox protein 2-like [Oryctolagus cuniculus]
Length = 406
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 49 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 83
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 84 ----KLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLN 139
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 140 CFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEAL 172
>gi|45382493|ref|NP_990689.1| LIM/homeobox protein LMX-1.2 [Gallus gallus]
gi|1708855|sp|P53413.1|LMX1B_CHICK RecName: Full=LIM/homeobox protein LMX-1.2; Short=Homeobox protein
LMX-1; Short=LIM/homeobox protein 1; Short=LMX
gi|1050198|gb|AAA96240.1| LIM1 domain bp 172-315, LIM2 domain bp 349-501, homeobox domain bp
655-831 [Gallus gallus]
Length = 377
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 74/148 (50%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GC I D++++RV + WH CL+CA C Q L
Sbjct: 31 AVCEGCQRPISDRFLMRVN-ESSWHEECLQCAVCQQAL---------------------- 67
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFC
Sbjct: 68 --------TTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLSCFC 119
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C VC +QL GDEF L+E L CK D+E
Sbjct: 120 CCVCERQLRKGDEFVLKEGQLLCKSDYE 147
>gi|348570108|ref|XP_003470839.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Cavia porcellus]
Length = 406
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 49 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 83
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 84 ----KLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLN 139
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 140 CFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEAL 172
>gi|30795196|ref|NP_004780.3| LIM/homeobox protein Lhx2 [Homo sapiens]
gi|297685314|ref|XP_002820237.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Pongo abelii]
gi|397473226|ref|XP_003808118.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Pan paniscus]
gi|426362988|ref|XP_004048630.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Gorilla gorilla
gorilla]
gi|8247936|sp|P50458.2|LHX2_HUMAN RecName: Full=LIM/homeobox protein Lhx2; Short=Homeobox protein
LH-2; Short=LIM homeobox protein 2
gi|62739692|gb|AAH93662.1| LIM homeobox 2 [Homo sapiens]
gi|85567249|gb|AAI12186.1| LIM homeobox protein 2 [Homo sapiens]
gi|119607982|gb|EAW87576.1| LIM homeobox 2, isoform CRA_a [Homo sapiens]
gi|167773563|gb|ABZ92216.1| LIM homeobox 2 [synthetic construct]
gi|261859194|dbj|BAI46119.1| LIM homeobox 2 [synthetic construct]
Length = 406
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 49 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 83
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 84 ----KLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLN 139
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 140 CFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEAL 172
>gi|403299862|ref|XP_003940693.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Saimiri boliviensis
boliviensis]
Length = 406
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 49 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 83
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 84 ----KLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLN 139
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 140 CFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEAL 172
>gi|348536385|ref|XP_003455677.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 3 [Oreochromis
niloticus]
Length = 320
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 73/146 (50%), Gaps = 29/146 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 69 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 103
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQC 122
L+ TCF +DG YCK DY R +C +C+L + VMRA++ +YH+ C
Sbjct: 104 ----KLALESELTCFAKDGSIYCKEDYYRFSVQRCARCHLGISASEMVMRARDSVYHLSC 159
Query: 123 FCCVVCGKQLVPGDEFALREDGLFCK 148
F C C K L GD F +++ ++C+
Sbjct: 160 FTCTTCNKTLTTGDHFGMKDSLVYCR 185
>gi|354498706|ref|XP_003511455.1| PREDICTED: LIM/homeobox protein Lhx2-like [Cricetulus griseus]
Length = 475
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 122 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 156
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 157 ----KLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLN 212
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 213 CFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEAL 245
>gi|326924942|ref|XP_003208681.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 2 [Meleagris
gallopavo]
Length = 271
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 8 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 42
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA+ +YH+
Sbjct: 43 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARESVYHLS 98
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F ++++ ++C+ E +
Sbjct: 99 CFTCTTCNKTLTTGDHFGMKDNLVYCRAHFESL 131
>gi|432856246|ref|XP_004068425.1| PREDICTED: LIM/homeobox protein Lhx4-like [Oryzias latipes]
Length = 389
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 86/188 (45%), Gaps = 35/188 (18%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+++ C GC I D++IL+V D WH+ CL+CA+C L + CF R G YCK D+
Sbjct: 26 QQIPQCAGCSQHILDKFILKVL-DRHWHSKCLKCADCQTPLADK--CFSRAGSVYCKEDF 82
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
F R FGTKC C V +A++ +YH+
Sbjct: 83 ---------------FKR-------------FGTKCASCQQGIPPTQVVRKAQDFVYHLH 114
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGM---DKSSNGENNNNNTNINNNLHNLN 177
CF C++C +QL GDEF L EDG L CK D+E D S G T L L
Sbjct: 115 CFACIMCSRQLATGDEFYLMEDGRLVCKVDYETAKQNDDSEAGTKRPRTTITAKQLETLK 174
Query: 178 NEGSNSGK 185
+ NS K
Sbjct: 175 SAYKNSPK 182
>gi|344276912|ref|XP_003410249.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Loxodonta africana]
Length = 388
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 58 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 92
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 93 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 148
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 149 CFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETL 181
>gi|332229975|ref|XP_003264161.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Nomascus
leucogenys]
Length = 406
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 49 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 83
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 84 ----KLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLN 139
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 140 CFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEAL 172
>gi|402897927|ref|XP_003911988.1| PREDICTED: LOW QUALITY PROTEIN: LIM homeobox transcription factor
1-beta [Papio anubis]
Length = 406
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 89/184 (48%), Gaps = 36/184 (19%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GC I D++++RV + WH CL+CA C Q L
Sbjct: 54 AVCEGCQRPISDRFLMRVN-ESSWHEECLQCAACQQAL---------------------- 90
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFC
Sbjct: 91 --------TTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFC 142
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEG----MDKSSNGENNN-NNTNINNNLHNLNNE 179
C VC +QL GDEF L+E L CK D+E + S E+++ + + + ++ +
Sbjct: 143 CCVCERQLRKGDEFVLKEGQLLCKGDYEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQ 202
Query: 180 GSNS 183
GS S
Sbjct: 203 GSQS 206
>gi|431898999|gb|ELK07369.1| LIM/homeobox protein Lhx3 [Pteropus alecto]
Length = 357
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 74/150 (49%), Gaps = 32/150 (21%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ LC GC I D++IL+ A D WH+ CL+C++CH L E C
Sbjct: 31 IPLCAGCDQHILDRFILK-ALDRHWHSKCLKCSDCHTPLAERC----------------- 72
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F R YCK D+ + FGTKC C L V RA++ +YH+ CF
Sbjct: 73 -------------FSRGESVYCKEDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCF 119
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHE 152
CVVC +QL GDEF L ED L CK D+E
Sbjct: 120 ACVVCKRQLATGDEFYLMEDSRLVCKADYE 149
>gi|395824161|ref|XP_003785339.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Otolemur garnettii]
Length = 406
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 49 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 83
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 84 ----KLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLN 139
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 140 CFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEAL 172
>gi|62241033|ref|NP_001014434.1| LIM/homeobox protein Lhx9 isoform 2 [Homo sapiens]
gi|114571650|ref|XP_525011.2| PREDICTED: LIM/homeobox protein Lhx9 isoform 6 [Pan troglodytes]
gi|297281170|ref|XP_001110674.2| PREDICTED: LIM/homeobox protein Lhx9 isoform 3 [Macaca mulatta]
gi|395729258|ref|XP_002809704.2| PREDICTED: LIM/homeobox protein Lhx9 [Pongo abelii]
gi|397505118|ref|XP_003823120.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Pan paniscus]
gi|402857736|ref|XP_003893401.1| PREDICTED: LIM/homeobox protein Lhx9 [Papio anubis]
gi|426333155|ref|XP_004028150.1| PREDICTED: LIM/homeobox protein Lhx9 [Gorilla gorilla gorilla]
gi|9367761|emb|CAB97493.1| LIM-homeobox 9 [Homo sapiens]
gi|119611697|gb|EAW91291.1| LIM homeobox 9, isoform CRA_e [Homo sapiens]
Length = 388
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 58 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 92
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 93 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 148
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 149 CFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETL 181
>gi|403307414|ref|XP_003944190.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Saimiri boliviensis
boliviensis]
Length = 388
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 58 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 92
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 93 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 148
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 149 CFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETL 181
>gi|348536381|ref|XP_003455675.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 1 [Oreochromis
niloticus]
Length = 399
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 74/147 (50%), Gaps = 30/147 (20%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 69 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 103
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 104 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 159
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCK 148
CF C C K L GD F +++ ++C+
Sbjct: 160 CFTCTTCNKTLTTGDHFGMKDSLVYCR 186
>gi|348570110|ref|XP_003470840.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 3 [Cavia porcellus]
Length = 404
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 48 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 82
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 83 ----KLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLN 138
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 139 CFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEAL 171
>gi|1708829|sp|P50481.1|LHX3_MOUSE RecName: Full=LIM/homeobox protein Lhx3; Short=LIM homeobox protein
3; AltName: Full=Homeobox protein LIM-3; AltName:
Full=Homeobox protein P-LIM
gi|575517|gb|AAA62369.1| LIM-homeoprotein [Mus musculus]
gi|187956241|gb|AAI50690.1| Lhx3 protein [Mus musculus]
Length = 400
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 84/185 (45%), Gaps = 34/185 (18%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ +C GC I D++IL+ A D WH+ CL+C++CH L E C
Sbjct: 31 IPMCAGCDQHILDRFILK-ALDRHWHSKCLKCSDCHVPLAERC----------------- 72
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F R YCK D+ + FGTKC C L V RA++ +YH+ CF
Sbjct: 73 -------------FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCF 119
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHE-GMDKSSNGENNNNNTNIN-NNLHNLNNEG 180
CVVC +QL GDEF L ED L CK D+E + + T I L L +
Sbjct: 120 ACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKSAY 179
Query: 181 SNSGK 185
+ S K
Sbjct: 180 NTSPK 184
>gi|296230329|ref|XP_002760660.1| PREDICTED: LIM/homeobox protein Lhx9 [Callithrix jacchus]
Length = 388
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 58 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 92
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 93 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 148
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 149 CFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETL 181
>gi|291402696|ref|XP_002717724.1| PREDICTED: LIM homeobox protein 9-like isoform 2 [Oryctolagus
cuniculus]
Length = 388
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 58 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 92
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 93 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 148
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 149 CFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETL 181
>gi|410986204|ref|XP_003999402.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Felis catus]
Length = 380
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 48 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 82
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 83 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 138
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 139 CFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETL 171
>gi|348570106|ref|XP_003470838.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Cavia porcellus]
Length = 404
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 48 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 82
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 83 ----KLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLN 138
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 139 CFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEAL 171
>gi|25453086|sp|O97581.1|LHX3_PIG RecName: Full=LIM/homeobox protein Lhx3; Short=LIM homeobox protein
3; AltName: Full=Homeobox protein LIM-3; AltName:
Full=Homeobox protein P-LIM
gi|4091889|gb|AAC99331.1| LIM homeodomain transcription factor [Sus scrofa]
Length = 383
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 85/187 (45%), Gaps = 34/187 (18%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+ + LC GC I D++IL+ A D WH+ CL+C++CH L E C
Sbjct: 11 KEIPLCAGCDQHILDRFILK-ALDRHWHSKCLKCSDCHTPLAERC--------------- 54
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
F R YCK D+ + FGTKC C L V RA++ +YH+
Sbjct: 55 ---------------FSRGESLYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLH 99
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHE-GMDKSSNGENNNNNTNIN-NNLHNLNN 178
CF CVVC +QL GDEF L ED L CK D+E + + T I L L +
Sbjct: 100 CFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKS 159
Query: 179 EGSNSGK 185
+ S K
Sbjct: 160 AYNTSPK 166
>gi|301769257|ref|XP_002920045.1| PREDICTED: LIM/homeobox protein Lhx2-like isoform 2 [Ailuropoda
melanoleuca]
Length = 404
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 48 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 82
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 83 ----KLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLN 138
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 139 CFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEAL 171
>gi|351701911|gb|EHB04830.1| LIM/homeobox protein Lhx3 [Heterocephalus glaber]
Length = 448
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 73/150 (48%), Gaps = 32/150 (21%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ LC GC I D+++L+ D WH+ CL+C++CH L E C
Sbjct: 79 IPLCAGCDQHILDRFVLKAL-DRHWHSKCLKCSDCHTPLAERC----------------- 120
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F R YCK D+ + FGTKC C L V RA++ +YH+ CF
Sbjct: 121 -------------FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCF 167
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHE 152
CVVC +QL GDEF L ED L CK D+E
Sbjct: 168 ACVVCKRQLATGDEFYLMEDSRLVCKADYE 197
>gi|6180221|emb|CAB59908.1| putative LIM homeodomain protein [Mus musculus]
Length = 366
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 36 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 70
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 71 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 126
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 127 CFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETL 159
>gi|281347117|gb|EFB22701.1| hypothetical protein PANDA_014076 [Ailuropoda melanoleuca]
Length = 369
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 72/150 (48%), Gaps = 32/150 (21%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ LC GC I D++IL+ D WH+ CL+C +CH L E C
Sbjct: 31 IPLCAGCDQHILDRFILKAL-DRHWHSKCLKCTDCHAPLAERC----------------- 72
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F R YCK D+ + FGTKC C L V RA++ +YH+ CF
Sbjct: 73 -------------FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCF 119
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHE 152
CVVC +QL GDEF L ED L CK D+E
Sbjct: 120 ACVVCKRQLATGDEFYLMEDSRLVCKADYE 149
>gi|117306370|gb|AAI26705.1| LHX9 protein [Bos taurus]
Length = 388
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 58 KPALCAGCGGKIADRYYL-LAVDKQWHLRCLKCCEC------------------------ 92
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 93 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 148
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 149 CFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETL 181
>gi|395838925|ref|XP_003792355.1| PREDICTED: LIM/homeobox protein Lhx9 [Otolemur garnettii]
Length = 397
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 67 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 101
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 102 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 157
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 158 CFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETL 190
>gi|119611694|gb|EAW91288.1| LIM homeobox 9, isoform CRA_b [Homo sapiens]
Length = 378
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 48 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 82
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 83 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 138
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 139 CFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETL 171
>gi|345803062|ref|XP_857156.2| PREDICTED: LIM/homeobox protein Lhx9 isoform 4 [Canis lupus
familiaris]
Length = 380
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 48 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 82
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 83 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 138
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 139 CFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETL 171
>gi|301767830|ref|XP_002919335.1| PREDICTED: LIM/homeobox protein Lhx9-like [Ailuropoda melanoleuca]
Length = 447
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 58 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 92
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 93 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 148
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 149 CFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETL 181
>gi|148676344|gb|EDL08291.1| mCG18748, isoform CRA_a [Mus musculus]
Length = 400
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 84/185 (45%), Gaps = 34/185 (18%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ +C GC I D++IL+ A D WH+ CL+C++CH L E C
Sbjct: 31 IPMCAGCDQHILDRFILK-ALDRHWHSKCLKCSDCHVPLAERC----------------- 72
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F R YCK D+ + FGTKC C L V RA++ +YH+ CF
Sbjct: 73 -------------FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCF 119
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHE-GMDKSSNGENNNNNTNIN-NNLHNLNNEG 180
CVVC +QL GDEF L ED L CK D+E + + T I L L +
Sbjct: 120 ACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKSAY 179
Query: 181 SNSGK 185
+ S K
Sbjct: 180 NTSPK 184
>gi|426363578|ref|XP_004048915.1| PREDICTED: LIM/homeobox protein Lhx3 [Gorilla gorilla gorilla]
Length = 304
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 73/150 (48%), Gaps = 32/150 (21%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ LC GC I D++IL+ D WH+ CL+C++CH L E C
Sbjct: 33 IPLCAGCDQHILDRFILKAL-DRHWHSKCLKCSDCHTPLAERC----------------- 74
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F R YCK D+ + FGTKC C L V RA++ +YH+ CF
Sbjct: 75 -------------FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCF 121
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHE 152
CVVC +QL GDEF L ED L CK D+E
Sbjct: 122 ACVVCKRQLATGDEFYLMEDSRLVCKADYE 151
>gi|126302625|ref|XP_001366249.1| PREDICTED: LIM/homeobox protein Lhx3-like isoform 1 [Monodelphis
domestica]
Length = 401
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 86/192 (44%), Gaps = 34/192 (17%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+ + LC GC I D++IL+V D WH+ CL+C++C L E C
Sbjct: 29 QEIPLCAGCNQHIVDRFILKVL-DRHWHSKCLKCSDCQTPLAEKC--------------- 72
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
F R YCK D+ + FGTKC C V RA++ +YH+
Sbjct: 73 ---------------FSRGDGVYCKEDFFKRFGTKCAACQQGIPPTQVVRRAQDFVYHLH 117
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGMDK--SSNGENNNNNTNINNNLHNLNN 178
CF CVVC +QL GDEF L ED L CK D+E + + + T L L N
Sbjct: 118 CFSCVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAESTAKRPRTTITAKQLETLKN 177
Query: 179 EGSNSGKIQLYL 190
+NS K ++
Sbjct: 178 AYNNSPKPARHV 189
>gi|4530371|gb|AAD22008.1| LIM homeobox protein 9 [Mus musculus]
Length = 378
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 48 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 82
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 83 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 138
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 139 CFTCFTCNKTLTTGDHFGMKDSLVYCRAHFETL 171
>gi|351707222|gb|EHB10141.1| LIM homeobox transcription factor 1-beta [Heterocephalus glaber]
Length = 395
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 74/148 (50%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GC I D++++RV + WH CL+CA C Q L
Sbjct: 54 AVCEGCQRPISDRFLMRVN-ESSWHEECLQCAACQQAL---------------------- 90
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFC
Sbjct: 91 --------TTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFC 142
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C VC +QL GDEF L+E L CK D+E
Sbjct: 143 CCVCERQLRKGDEFVLKEGQLLCKGDYE 170
>gi|31077136|ref|NP_852032.1| LIM/homeobox protein Lhx9 [Rattus norvegicus]
gi|81895227|sp|Q80W90.1|LHX9_RAT RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
gi|30525882|gb|AAP32472.1| LIM-homeodomain type transcription factor Lhx9 [Rattus norvegicus]
Length = 388
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 58 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 92
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 93 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 148
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 149 CFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETL 181
>gi|390345308|ref|XP_790548.3| PREDICTED: LIM homeobox transcription factor 1-beta-like
[Strongylocentrotus purpuratus]
Length = 387
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 76/146 (52%), Gaps = 31/146 (21%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C GC I D+Y+++V D WH CL+C+ C L
Sbjct: 32 MCAGCQRAIDDRYLMKVM-DHCWHEQCLQCSVCRIRLSH--------------------- 69
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
+CF RD K YCK DY +LFGTKC C + + VMRA + +YH++CF C
Sbjct: 70 ---------SCFARDRKLYCKLDYEKLFGTKCNACFQSIPSSELVMRALSNVYHLRCFTC 120
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDH 151
V C +QL GDEF L+E+ L+CK+D+
Sbjct: 121 VTCDQQLKKGDEFVLKENRLYCKEDY 146
>gi|344276910|ref|XP_003410248.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Loxodonta africana]
Length = 380
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 48 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 82
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 83 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 138
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 139 CFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETL 171
>gi|301605174|ref|XP_002932200.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 1 [Xenopus
(Silurana) tropicalis]
Length = 331
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 74/147 (50%), Gaps = 30/147 (20%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 68 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 102
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA+ +YH+
Sbjct: 103 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARESVYHLS 158
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCK 148
CF C C K L GD F ++E+ ++C+
Sbjct: 159 CFTCTTCNKTLSTGDHFGMKENLVYCR 185
>gi|149743835|ref|XP_001492921.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Equus caballus]
Length = 388
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 58 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 92
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 93 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 148
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 149 CFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETL 181
>gi|293345789|ref|XP_002726117.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Rattus norvegicus]
gi|293357702|ref|XP_002729190.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Rattus norvegicus]
gi|149039301|gb|EDL93521.1| rCG45383, isoform CRA_a [Rattus norvegicus]
Length = 400
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 84/185 (45%), Gaps = 34/185 (18%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ +C GC I D++IL+ A D WH+ CL+C++CH L E C
Sbjct: 31 IPMCAGCDQHILDRFILK-ALDRHWHSKCLKCSDCHVPLAERC----------------- 72
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F R YCK D+ + FGTKC C L V RA++ +YH+ CF
Sbjct: 73 -------------FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCF 119
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHE-GMDKSSNGENNNNNTNIN-NNLHNLNNEG 180
CVVC +QL GDEF L ED L CK D+E + + T I L L +
Sbjct: 120 ACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKSAY 179
Query: 181 SNSGK 185
+ S K
Sbjct: 180 NTSPK 184
>gi|397505116|ref|XP_003823119.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Pan paniscus]
gi|441624364|ref|XP_004088986.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Nomascus
leucogenys]
Length = 399
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 67 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 101
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 102 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 157
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 158 CFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETL 190
>gi|351708127|gb|EHB11046.1| LIM/homeobox protein Lhx9 [Heterocephalus glaber]
Length = 397
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 67 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 101
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 102 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 157
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 158 CFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETL 190
>gi|348578260|ref|XP_003474901.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 1 [Cavia
porcellus]
Length = 397
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 67 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 101
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 102 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 157
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 158 CFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETL 190
>gi|126306415|ref|XP_001367775.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Monodelphis
domestica]
gi|395531045|ref|XP_003767593.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Sarcophilus
harrisii]
Length = 321
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 58 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 92
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA+ +YH+
Sbjct: 93 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARESVYHLS 148
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F ++++ ++C+ E +
Sbjct: 149 CFTCTTCNKTLTTGDHFGMKDNLVYCRAHFETL 181
>gi|149038965|gb|EDL93185.1| LIM homeobox transcription factor 1 beta [Rattus norvegicus]
Length = 372
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 74/148 (50%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GC I D++++RV + WH CL+CA C Q L
Sbjct: 31 AVCEGCQRPISDRFLMRVN-ESSWHEECLQCAACQQAL---------------------- 67
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFC
Sbjct: 68 --------TTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFC 119
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C VC +QL GDEF L+E L CK D+E
Sbjct: 120 CCVCERQLRKGDEFVLKEGQLLCKGDYE 147
>gi|301778549|ref|XP_002924694.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx3-like
[Ailuropoda melanoleuca]
Length = 365
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 82/173 (47%), Gaps = 34/173 (19%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+ + LC GC I D++IL+ D WH+ CL+C +CH L E C
Sbjct: 29 QEIPLCAGCDQHILDRFILKAL-DRHWHSKCLKCTDCHAPLAERC--------------- 72
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
F R YCK D+ + FGTKC C L V RA++ +YH+
Sbjct: 73 ---------------FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLH 117
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGMDKSSNGENNNNNTNINNNL 173
CF CVVC +QL GDEF L ED L CK D+E + G+ + T ++ ++
Sbjct: 118 CFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQ--RGQWGSPPTLLSPSV 168
>gi|2497672|sp|Q60564.1|LMX1B_MESAU RecName: Full=LIM homeobox transcription factor 1-beta; AltName:
Full=LIM/homeobox protein 1.2; Short=LMX-1.2; AltName:
Full=LIM/homeobox protein LMX1B
gi|1432087|gb|AAB62320.1| LIM-homeodomain protein [Mesocricetus auratus]
Length = 369
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 74/148 (50%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GC I D++++RV + WH CL+CA C Q L
Sbjct: 21 AVCEGCQRPISDRFLMRVN-ESSWHEECLQCAACQQAL---------------------- 57
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFC
Sbjct: 58 --------TTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFC 109
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C VC +QL GDEF L+E L CK D+E
Sbjct: 110 CCVCERQLRKGDEFVLKEGQLLCKGDYE 137
>gi|33569216|ref|NP_064589.2| LIM/homeobox protein Lhx9 isoform 1 [Homo sapiens]
gi|73960328|ref|XP_848787.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Canis lupus
familiaris]
gi|332230752|ref|XP_003264559.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Nomascus
leucogenys]
gi|224471883|sp|Q9NQ69.3|LHX9_HUMAN RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
gi|33416232|gb|AAP32471.2| LIM-homeobox 9 protein [Homo sapiens]
gi|119611696|gb|EAW91290.1| LIM homeobox 9, isoform CRA_d [Homo sapiens]
gi|124297089|gb|AAI31623.1| LIM homeobox 9 [Homo sapiens]
gi|355558916|gb|EHH15696.1| hypothetical protein EGK_01820 [Macaca mulatta]
gi|355746065|gb|EHH50690.1| hypothetical protein EGM_01558 [Macaca fascicularis]
Length = 397
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 67 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 101
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 102 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 157
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 158 CFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETL 190
>gi|431921900|gb|ELK19103.1| LIM/homeobox protein Lhx9 [Pteropus alecto]
Length = 479
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 149 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 183
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 184 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 239
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 240 CFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETL 272
>gi|351702111|gb|EHB05030.1| LIM/homeobox protein Lhx2 [Heterocephalus glaber]
Length = 502
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 161 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 195
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 196 ----KLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLN 251
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 252 CFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEAL 284
>gi|291402694|ref|XP_002717723.1| PREDICTED: LIM homeobox protein 9-like isoform 1 [Oryctolagus
cuniculus]
Length = 397
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 67 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 101
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 102 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 157
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 158 CFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETL 190
>gi|444717046|gb|ELW57882.1| LIM/homeobox protein Lhx9 [Tupaia chinensis]
Length = 378
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 48 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 82
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 83 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 138
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 139 CFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETL 171
>gi|403307412|ref|XP_003944189.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Saimiri boliviensis
boliviensis]
Length = 399
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 67 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 101
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 102 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 157
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 158 CFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETL 190
>gi|225709660|gb|ACO10676.1| LIM/homeobox protein Awh [Caligus rogercresseyi]
Length = 274
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 75/142 (52%), Gaps = 29/142 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C CG I DQYIL+VA WH++CLRC+ C + LD + +C
Sbjct: 25 CSDCGAGITDQYILQVAGQ-SWHSSCLRCSVCQEILDSHSSC------------------ 65
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F++D +CK DY R FG+KC KC+ N D+V +A+ +IYH+ CF C
Sbjct: 66 ----------FIKDDLLFCKLDYARAFGSKCFKCSRNISPSDWVRKAREQIYHLACFSCD 115
Query: 127 VCGKQLVPGDEFALREDGLFCK 148
C +QL G+EF + ED + CK
Sbjct: 116 GCKRQLSTGEEFGIFEDRVLCK 137
>gi|114571656|ref|XP_001139158.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Pan troglodytes]
Length = 399
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 67 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 101
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 102 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 157
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 158 CFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETL 190
>gi|89001116|ref|NP_001034742.1| LIM/homeobox protein Lhx3 [Mus musculus]
gi|598327|gb|AAB64178.1| homeodomain protein [Mus musculus]
gi|124375774|gb|AAI32557.1| LIM homeobox protein 3 [Mus musculus]
gi|124376794|gb|AAI32555.1| LIM homeobox protein 3 [Mus musculus]
Length = 402
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 84/185 (45%), Gaps = 34/185 (18%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ +C GC I D++IL+ A D WH+ CL+C++CH L E C
Sbjct: 33 IPMCAGCDQHILDRFILK-ALDRHWHSKCLKCSDCHVPLAERC----------------- 74
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F R YCK D+ + FGTKC C L V RA++ +YH+ CF
Sbjct: 75 -------------FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCF 121
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHE-GMDKSSNGENNNNNTNIN-NNLHNLNNEG 180
CVVC +QL GDEF L ED L CK D+E + + T I L L +
Sbjct: 122 ACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKSAY 181
Query: 181 SNSGK 185
+ S K
Sbjct: 182 NTSPK 186
>gi|293345851|ref|XP_001078699.2| PREDICTED: LIM homeobox transcription factor 1-beta isoform 2
[Rattus norvegicus]
gi|293357761|ref|XP_001069713.2| PREDICTED: LIM homeobox transcription factor 1-beta isoform 1
[Rattus norvegicus]
Length = 395
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 74/148 (50%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GC I D++++RV + WH CL+CA C Q L
Sbjct: 54 AVCEGCQRPISDRFLMRVN-ESSWHEECLQCAACQQAL---------------------- 90
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFC
Sbjct: 91 --------TTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFC 142
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C VC +QL GDEF L+E L CK D+E
Sbjct: 143 CCVCERQLRKGDEFVLKEGQLLCKGDYE 170
>gi|332018691|gb|EGI59263.1| Protein apterous [Acromyrmex echinatior]
Length = 558
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 75/149 (50%), Gaps = 31/149 (20%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C GCG +I D++ L+ D WHAACL+C+ C
Sbjct: 183 VCAGCGLKISDRFYLQAV-DKRWHAACLQCSHC--------------------------- 214
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGT--KCEKCNLNFKREDFVMRAKNKIYHVQCF 123
Q LD TCF RDG YCK+DY R+FG+ +C +C + VMRA+ ++HV+CF
Sbjct: 215 -RQGLDGEVTCFSRDGNIYCKKDYYRMFGSMKRCARCQAAILASELVMRARELVFHVRCF 273
Query: 124 CCVVCGKQLVPGDEFALREDGLFCKDDHE 152
C C L+ GD F +R+ + C+ +E
Sbjct: 274 SCAACAVLLMKGDHFGMRDGAVLCRLHYE 302
>gi|440904877|gb|ELR55334.1| LIM/homeobox protein Lhx9 [Bos grunniens mutus]
Length = 397
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 67 KPALCAGCGGKIADRYYL-LAVDKQWHLRCLKCCEC------------------------ 101
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 102 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 157
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 158 CFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETL 190
>gi|354485102|ref|XP_003504723.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 2 [Cricetulus
griseus]
Length = 397
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 67 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 101
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 102 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 157
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 158 CFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETL 190
>gi|148676345|gb|EDL08292.1| mCG18748, isoform CRA_b [Mus musculus]
Length = 402
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 84/185 (45%), Gaps = 34/185 (18%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ +C GC I D++IL+ A D WH+ CL+C++CH L E C
Sbjct: 33 IPMCAGCDQHILDRFILK-ALDRHWHSKCLKCSDCHVPLAERC----------------- 74
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F R YCK D+ + FGTKC C L V RA++ +YH+ CF
Sbjct: 75 -------------FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCF 121
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHE-GMDKSSNGENNNNNTNIN-NNLHNLNNEG 180
CVVC +QL GDEF L ED L CK D+E + + T I L L +
Sbjct: 122 ACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKSAY 181
Query: 181 SNSGK 185
+ S K
Sbjct: 182 NTSPK 186
>gi|224471838|sp|A0JNI8.2|LHX9_BOVIN RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
gi|110665672|gb|ABG81482.1| LIM homeobox 9 [Bos taurus]
Length = 397
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 67 KPALCAGCGGKIADRYYL-LAVDKQWHLRCLKCCEC------------------------ 101
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 102 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 157
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 158 CFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETL 190
>gi|66792874|ref|NP_001019715.1| LIM/homeobox protein Lhx9 [Bos taurus]
gi|61555226|gb|AAX46681.1| LIM homeobox 9 [Bos taurus]
gi|296478851|tpg|DAA20966.1| TPA: LIM/homeobox protein Lhx9 [Bos taurus]
Length = 378
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 48 KPALCAGCGGKIADRYYL-LAVDKQWHLRCLKCCEC------------------------ 82
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 83 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 138
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 139 CFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETL 171
>gi|780314|gb|AAA73902.1| PLim [Mus musculus]
Length = 400
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 83/185 (44%), Gaps = 34/185 (18%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ +C GC I D++IL+ D WH+ CL+C++CH L E C
Sbjct: 31 IPMCAGCDQHILDRFILKAL-DRHWHSKCLKCSDCHVPLAERC----------------- 72
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F R YCK D+ + FGTKC C L V RA++ +YH+ CF
Sbjct: 73 -------------FSRRESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCF 119
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHE-GMDKSSNGENNNNNTNIN-NNLHNLNNEG 180
CVVC +QL GDEF L ED L CK D+E + + T I L L +
Sbjct: 120 ACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKSAY 179
Query: 181 SNSGK 185
+ S K
Sbjct: 180 NTSPK 184
>gi|47225657|emb|CAG08000.1| unnamed protein product [Tetraodon nigroviridis]
Length = 363
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 83/186 (44%), Gaps = 35/186 (18%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ C GC I D++IL+V D WH+ CL+CA+C L + CF R G Y
Sbjct: 2 IPQCAGCSQHILDKFILKVL-DRHWHSKCLKCADCQTPLADK--CFSRAGSVY------- 51
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
CK D+ + FGTKC C V +A++ +YH+ CF
Sbjct: 52 ---------------------CKEDFFKRFGTKCASCQKGIPPMQVVRKAQDFVYHLHCF 90
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHEGM---DKSSNGENNNNNTNINNNLHNLNNE 179
C++C +QL GDEF L EDG L CK D+E D S G T L L +
Sbjct: 91 ACIMCSRQLATGDEFYLMEDGRLVCKVDYEAAKQNDDSEAGTKRPRTTITAKQLETLKSA 150
Query: 180 GSNSGK 185
NS K
Sbjct: 151 YKNSPK 156
>gi|395506422|ref|XP_003757531.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Sarcophilus
harrisii]
Length = 401
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 86/192 (44%), Gaps = 34/192 (17%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+ + LC GC I D++IL+V D WH+ CL+C++C L E C
Sbjct: 29 QEIPLCAGCNQHIVDRFILKVL-DRHWHSKCLKCSDCQTPLAEKC--------------- 72
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
F R YCK D+ + FGTKC C V RA++ +YH+
Sbjct: 73 ---------------FSRGDGVYCKEDFFKRFGTKCAACQQGIPPTQVVRRAQDFVYHLH 117
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHEGMDK--SSNGENNNNNTNINNNLHNLNN 178
CF CVVC +QL GDEF L ED L CK D+E + + + T L L N
Sbjct: 118 CFSCVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAESTAKRPRTTITAKQLETLKN 177
Query: 179 EGSNSGKIQLYL 190
+NS K ++
Sbjct: 178 AYNNSPKPARHV 189
>gi|110611159|ref|NP_001036042.1| LIM/homeobox protein Lhx9 isoform c [Mus musculus]
gi|224471884|sp|Q9WUH2.3|LHX9_MOUSE RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
Length = 397
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 67 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 101
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 102 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 157
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 158 CFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETL 190
>gi|149058121|gb|EDM09278.1| LIM homeobox transcription factor 1 alpha (predicted) [Rattus
norvegicus]
Length = 263
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 87/189 (46%), Gaps = 39/189 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S+C GC I D+++LR+ D WH C++CA C + L+
Sbjct: 33 SVCEGCQRVISDRFLLRLN-DSFWHEQCVQCASCKEPLE--------------------- 70
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
TCF RD K YCK Y +LF KC C +FVMRA+ +YH+ CFC
Sbjct: 71 ---------TTCFYRDKKLYCKYHYEKLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFC 121
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEG--------MDKSSNGENNNNNTNINNNLHNL 176
C VC +QL GDEF L+E L CK D+E +S+ +++ ++ + H
Sbjct: 122 CCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSLVSPAASDSGKSDDEESLCKSAHGA 181
Query: 177 NNEGSNSGK 185
S GK
Sbjct: 182 GKGASEDGK 190
>gi|281354175|gb|EFB29759.1| hypothetical protein PANDA_007956 [Ailuropoda melanoleuca]
Length = 382
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 67 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 101
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 102 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 157
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 158 CFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETL 190
>gi|332230041|ref|XP_003264195.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 2
[Nomascus leucogenys]
Length = 401
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 74/148 (50%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GC I D++++RV + WH CL+CA C Q L
Sbjct: 54 AVCEGCQRPISDRFLMRVN-ESSWHEECLQCAACQQAL---------------------- 90
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFC
Sbjct: 91 --------TTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFC 142
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C VC +QL GDEF L+E L CK D+E
Sbjct: 143 CCVCERQLRKGDEFVLKEGQLLCKGDYE 170
>gi|332230043|ref|XP_003264196.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 3
[Nomascus leucogenys]
Length = 416
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 74/148 (50%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GC I D++++RV + WH CL+CA C Q L
Sbjct: 54 AVCEGCQRPISDRFLMRVN-ESSWHEECLQCAACQQAL---------------------- 90
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFC
Sbjct: 91 --------TTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFC 142
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C VC +QL GDEF L+E L CK D+E
Sbjct: 143 CCVCERQLRKGDEFVLKEGQLLCKGDYE 170
>gi|225708026|gb|ACO09859.1| LIM/homeobox protein Lhx9 [Osmerus mordax]
Length = 317
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 72/146 (49%), Gaps = 29/146 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D WH CL+C EC
Sbjct: 67 KPALCAGCGGKISDRYYL-LAVDKRWHLRCLKCCEC------------------------ 101
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQC 122
L+ TCF +DG YCK DY R +C +C+L + VMRA++ +YH+ C
Sbjct: 102 ----KLALESELTCFAKDGSIYCKEDYYRFSVQRCARCHLGISASEMVMRARDSVYHLSC 157
Query: 123 FCCVVCGKQLVPGDEFALREDGLFCK 148
F C C K L GD F +++ ++C+
Sbjct: 158 FTCTTCNKTLTTGDHFGMKDSLVYCR 183
>gi|157127146|ref|XP_001661055.1| lim homeobox protein [Aedes aegypti]
gi|108873020|gb|EAT37245.1| AAEL010744-PA [Aedes aegypti]
Length = 459
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 88/167 (52%), Gaps = 40/167 (23%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D++IL+V+ D WHA CL+C++CH L+E CF R+G+ +CK D+
Sbjct: 63 CGGCHELILDRFILKVS-DRTWHAKCLQCSDCHIQLNEK--CFARNGQLFCKDDF----- 114
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R +GTKC C+L V RA++ +YH+QCF C
Sbjct: 115 ----------FKR-------------YGTKCAACDLGIPPTQVVRRAQDNVYHLQCFMCS 151
Query: 127 VCGKQLVPGDEFALREDG-LFCKDDHEGM--------DKSSNGENNN 164
+C +QL GDEF L EDG L CK D+E D S +GE++N
Sbjct: 152 MCSRQLNTGDEFYLIEDGKLICKPDYEAAKAKGLYLSDGSLDGESSN 198
>gi|148707230|gb|EDL39177.1| LIM homeobox transcription factor 1 alpha [Mus musculus]
Length = 352
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 87/189 (46%), Gaps = 39/189 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S+C GC I D+++LR+ D WH C++CA C + L+
Sbjct: 33 SVCEGCQRVISDRFLLRLN-DSFWHEQCVQCASCKEPLE--------------------- 70
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
TCF RD K YCK Y +LF KC C +FVMRA+ +YH+ CFC
Sbjct: 71 ---------TTCFYRDKKLYCKYHYEKLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFC 121
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEG--------MDKSSNGENNNNNTNINNNLHNL 176
C VC +QL GDEF L+E L CK D+E +S+ +++ ++ + H
Sbjct: 122 CCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSLVSPAASDSGKSDDEESLCKSAHGA 181
Query: 177 NNEGSNSGK 185
S GK
Sbjct: 182 GKGASEDGK 190
>gi|444707251|gb|ELW48535.1| LIM/homeobox protein Lhx2 [Tupaia chinensis]
Length = 442
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 49 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 83
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 84 ----KLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLN 139
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 140 CFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEAL 172
>gi|157115167|ref|XP_001652548.1| lim homeobox protein [Aedes aegypti]
gi|108876992|gb|EAT41217.1| AAEL007120-PA [Aedes aegypti]
Length = 459
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 88/167 (52%), Gaps = 40/167 (23%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D++IL+V+ D WHA CL+C++CH L+E CF R+G+ +CK D+
Sbjct: 63 CGGCHELILDRFILKVS-DRTWHAKCLQCSDCHIQLNEK--CFARNGQLFCKDDF----- 114
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R +GTKC C+L V RA++ +YH+QCF C
Sbjct: 115 ----------FKR-------------YGTKCAACDLGIPPTQVVRRAQDNVYHLQCFMCS 151
Query: 127 VCGKQLVPGDEFALREDG-LFCKDDHEGM--------DKSSNGENNN 164
+C +QL GDEF L EDG L CK D+E D S +GE++N
Sbjct: 152 MCSRQLNTGDEFYLIEDGKLICKPDYEAAKAKGLYLSDGSLDGESSN 198
>gi|357622661|gb|EHJ74087.1| apterous [Danaus plexippus]
Length = 359
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 74/149 (49%), Gaps = 30/149 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCGG+I D+Y L +A D +WH ACLRC EC LD TCF RDG Y
Sbjct: 18 CAGCGGRIQDRYYL-LAVDRQWHGACLRCCECRLPLDSELTCFSRDGNIY---------- 66
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK-CEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
CK DY RLF K C +C + VMRA++ ++H+ CF C
Sbjct: 67 ------------------CKDDYYRLFCVKRCARCGNGITANELVMRARDMVFHLTCFTC 108
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGM 154
V CG L GD F +R ++C+ ++ +
Sbjct: 109 VACGTLLSKGDVFGMRNSLVYCRPHYDSV 137
>gi|348578264|ref|XP_003474903.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 3 [Cavia
porcellus]
Length = 321
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 58 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 92
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 93 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 148
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 149 CFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETL 181
>gi|332230039|ref|XP_003264194.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 1
[Nomascus leucogenys]
Length = 408
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 74/148 (50%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GC I D++++RV + WH CL+CA C Q L
Sbjct: 54 AVCEGCQRPISDRFLMRVN-ESSWHEECLQCAACQQAL---------------------- 90
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFC
Sbjct: 91 --------TTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFC 142
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C VC +QL GDEF L+E L CK D+E
Sbjct: 143 CCVCERQLRKGDEFVLKEGQLLCKGDYE 170
>gi|335296201|ref|XP_003357709.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Sus scrofa]
Length = 388
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 58 KPALCAGCGGKIADRYYL-LAVDKQWHLRCLKCCEC------------------------ 92
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 93 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 148
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 149 CFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETL 181
>gi|4809142|gb|AAD30110.1|AF134761_1 LIM-homeodomain type transcription factor Lhx9 [Mus musculus]
Length = 300
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 58 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 92
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 93 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 148
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 149 CFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETL 181
>gi|6754542|ref|NP_034844.1| LIM/homeobox protein Lhx9 isoform b [Mus musculus]
gi|6179608|emb|CAB59907.1| putative LIM-homeodomain alpha isoform [Mus musculus]
gi|148707590|gb|EDL39537.1| LIM homeobox protein 9, isoform CRA_b [Mus musculus]
Length = 321
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 58 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 92
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 93 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 148
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 149 CFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETL 181
>gi|293345787|ref|XP_001078243.2| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Rattus norvegicus]
gi|293357700|ref|XP_001059910.2| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Rattus norvegicus]
gi|149039302|gb|EDL93522.1| rCG45383, isoform CRA_b [Rattus norvegicus]
Length = 402
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 84/185 (45%), Gaps = 34/185 (18%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ +C GC I D++IL+ A D WH+ CL+C++CH L E C
Sbjct: 33 IPMCAGCDQHILDRFILK-ALDRHWHSKCLKCSDCHVPLAERC----------------- 74
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F R YCK D+ + FGTKC C L V RA++ +YH+ CF
Sbjct: 75 -------------FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCF 121
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHE-GMDKSSNGENNNNNTNIN-NNLHNLNNEG 180
CVVC +QL GDEF L ED L CK D+E + + T I L L +
Sbjct: 122 ACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKSAY 181
Query: 181 SNSGK 185
+ S K
Sbjct: 182 NTSPK 186
>gi|354485100|ref|XP_003504722.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 1 [Cricetulus
griseus]
gi|118763751|gb|AAI28723.1| Lhx9 protein [Rattus norvegicus]
Length = 321
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 58 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 92
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 93 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 148
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 149 CFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETL 181
>gi|357622660|gb|EHJ74086.1| apterous a [Danaus plexippus]
Length = 397
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 76/150 (50%), Gaps = 30/150 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCG +I D+Y L +A + WH CLRC EC LD SE+
Sbjct: 63 CAGCGARITDRYYL-LALERRWHTPCLRCCECKMPLD--------------------SEQ 101
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK-CEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
C+ RD +CK DY RL+G+K C +CN + VMRA++ ++HV CF C
Sbjct: 102 R--------CYARDSNIFCKNDYFRLYGSKRCSRCNTTISASELVMRARDLVFHVHCFSC 153
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMD 155
+C +L GD F +R+ ++C+ +E M
Sbjct: 154 ALCSARLTKGDTFGIRDSAVYCRLHYETMP 183
>gi|335296199|ref|XP_003130643.2| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Sus scrofa]
Length = 399
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 67 KPALCAGCGGKIADRYYL-LAVDKQWHLRCLKCCEC------------------------ 101
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 102 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 157
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 158 CFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETL 190
>gi|34733871|gb|AAQ81868.1| LIM homeobox gene protein 2 [Ambystoma mexicanum]
Length = 398
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 49 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 83
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 84 ----KLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLN 139
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 140 CFTCSTCNKMLTTGDHFGMKDSLVYCRLHFESL 172
>gi|6180222|emb|CAB59909.1| putative LIM homeodomain protein [Mus musculus]
Length = 299
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 36 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 70
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 71 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 126
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 127 CFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETL 159
>gi|119611698|gb|EAW91292.1| LIM homeobox 9, isoform CRA_f [Homo sapiens]
Length = 321
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 58 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 92
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 93 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 148
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 149 CFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETL 181
>gi|348536383|ref|XP_003455676.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 2 [Oreochromis
niloticus]
Length = 333
Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 74/147 (50%), Gaps = 30/147 (20%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 69 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 103
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 104 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 159
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCK 148
CF C C K L GD F +++ ++C+
Sbjct: 160 CFTCTTCNKTLTTGDHFGMKDSLVYCR 186
>gi|291402698|ref|XP_002717725.1| PREDICTED: LIM homeobox protein 9-like isoform 3 [Oryctolagus
cuniculus]
Length = 321
Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 58 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 92
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 93 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 148
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 149 CFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETL 181
>gi|47217395|emb|CAG00755.1| unnamed protein product [Tetraodon nigroviridis]
Length = 343
Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 8 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 42
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 43 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 98
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 99 CFTCTTCNKTLTTGDHFGMKDSLVYCRLHFESL 131
>gi|70909340|ref|NP_001020736.1| LIM/homeobox protein Lhx9 isoform a [Mus musculus]
gi|49119043|gb|AAH72623.1| LIM homeobox protein 9 [Mus musculus]
Length = 330
Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 67 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 101
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 102 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 157
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 158 CFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETL 190
>gi|344254817|gb|EGW10921.1| LIM/homeobox protein Lhx9 [Cricetulus griseus]
Length = 311
Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 48 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 82
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 83 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 138
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 139 CFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETL 171
>gi|47228451|emb|CAG05271.1| unnamed protein product [Tetraodon nigroviridis]
Length = 579
Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats.
Identities = 64/204 (31%), Positives = 90/204 (44%), Gaps = 57/204 (27%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WHA C++C EC L E C
Sbjct: 164 CAGCERPILDRFLLNVL-DRAWHAKCVQCCECSCNLTEKC-------------------- 202
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F RDGK YCK D+ R FGTKC C D V +A++K++H+ CF C+
Sbjct: 203 ----------FSRDGKLYCKMDFFRRFGTKCAGCLQGISPNDLVRKARSKVFHLNCFTCM 252
Query: 127 VCGKQLVPGDE-FALREDGLFCKDD--HEGMDKSSNG----------------------- 160
VC KQL G+E + + E+ CK+D G K +N
Sbjct: 253 VCNKQLSTGEELYVIDENKFVCKEDFLSSGAIKEANLNSVSSCTDRSLSPDLQDPTQDDI 312
Query: 161 ENNNNNTNINNNLHNLNNEGSNSG 184
+ +N+T+ + +N+ NE NSG
Sbjct: 313 KETDNSTSSDKETNNIENEEQNSG 336
>gi|72535130|ref|NP_001025506.1| LIM/homeobox protein Lhx3 [Gallus gallus]
gi|1708828|sp|P53412.1|LHX3_CHICK RecName: Full=LIM/homeobox protein Lhx3; Short=LIM homeobox protein
3; AltName: Full=Homeobox protein LIM-3
gi|531185|gb|AAA62174.1| amino acid feature: LIM1, bp 82 .. 225; amino acid feature: LIM2,
bp 259 .. 414; amino acid feature: homeodomain, bp 457
.. 636 [Gallus gallus]
Length = 395
Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 83/185 (44%), Gaps = 34/185 (18%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ LC GC I D++IL+V D WH+ CL+C++C L E C
Sbjct: 25 IPLCAGCNQHIVDRFILKVL-DRHWHSKCLKCSDCQTQLAEKC----------------- 66
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F R YCK D+ + FGTKC C V RA++ +YH+ CF
Sbjct: 67 -------------FSRGDGVYCKEDFFKRFGTKCAACQQGIPPTQVVRRAQDFVYHLHCF 113
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHEGMDK--SSNGENNNNNTNINNNLHNLNNEG 180
C+VC +QL GDEF L ED L CK D+E + + + T L L N
Sbjct: 114 ACIVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAESTAKRPRTTITAKQLETLKNAY 173
Query: 181 SNSGK 185
+NS K
Sbjct: 174 NNSPK 178
>gi|27923333|gb|AAO27570.1| LIM-homeodomain type transcription factor Lhx9 [Rattus norvegicus]
Length = 325
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 36 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 70
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 71 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 126
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 127 CFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETL 159
>gi|123299964|dbj|BAF45328.1| LIM homeobox protein 2 [Sus scrofa]
Length = 373
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 49 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 83
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 84 ----KLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLN 139
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 140 CFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEAL 172
>gi|354497582|ref|XP_003510898.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Cricetulus griseus]
gi|344256661|gb|EGW12765.1| LIM/homeobox protein Lhx3 [Cricetulus griseus]
Length = 403
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 84/185 (45%), Gaps = 34/185 (18%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ +C GC I D++IL+ A D WH+ CL+C++CH L E C
Sbjct: 33 IPMCAGCDQHILDRFILK-ALDRHWHSKCLKCSDCHIPLAERC----------------- 74
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F R YCK D+ + FGTKC C L V RA++ +YH+ CF
Sbjct: 75 -------------FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCF 121
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHE-GMDKSSNGENNNNNTNIN-NNLHNLNNEG 180
CVVC +QL GDEF L ED L CK D+E + + T I L L +
Sbjct: 122 ACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKSAY 181
Query: 181 SNSGK 185
+ S K
Sbjct: 182 NTSPK 186
>gi|410903464|ref|XP_003965213.1| PREDICTED: LIM/homeobox protein Lhx3-like isoform 3 [Takifugu
rubripes]
Length = 390
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 86/188 (45%), Gaps = 34/188 (18%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
++ + +C GC I D++IL+V D WH+ CL+C++C L E C
Sbjct: 13 RKEIPVCAGCNQHIVDRFILKVL-DRHWHSKCLKCSDCQAQLAEKC-------------- 57
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
F R YCK D+ + FGTKC C V RA++ +YH+
Sbjct: 58 ----------------FSRGDSVYCKEDFFKRFGTKCAACQQGIPPTQVVRRAQDFVYHL 101
Query: 121 QCFCCVVCGKQLVPGDEFALREDG-LFCKDDHE-GMDKSSNGENNNNNTNIN-NNLHNLN 177
CF C+VC +QL GDE+ L ED L CK D+E + ++ T I L L
Sbjct: 102 HCFACIVCKRQLATGDEYYLMEDSRLVCKTDYETAKQREADSTAKRPRTTITAKQLETLK 161
Query: 178 NEGSNSGK 185
N +NS K
Sbjct: 162 NAYNNSPK 169
>gi|431898835|gb|ELK07205.1| LIM homeobox transcription factor 1-beta, partial [Pteropus alecto]
Length = 291
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 74/148 (50%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GC I D++++RV + WH CL+CA C Q L
Sbjct: 8 AVCEGCQRPISDRFLMRVN-ESSWHEECLQCAACQQAL---------------------- 44
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFC
Sbjct: 45 --------TTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFC 96
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C VC +QL GDEF L+E L CK D+E
Sbjct: 97 CCVCERQLRKGDEFVLKEGQLLCKGDYE 124
>gi|444730606|gb|ELW70984.1| LIM homeobox transcription factor 1-alpha [Tupaia chinensis]
Length = 265
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 75/148 (50%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S+C GC I D+++LR+ D WH C++CA C + L+
Sbjct: 33 SVCEGCQRVISDRFLLRLN-DSFWHEQCVQCASCKEPLET-------------------- 71
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
TCF RD K YCK DY +LF KC C +FVMRA+ +YH+ CFC
Sbjct: 72 ----------TCFYRDKKLYCKFDYEKLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFC 121
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C VC +QL GDEF L+E L CK D+E
Sbjct: 122 CCVCERQLQKGDEFVLKEGQLLCKGDYE 149
>gi|357605400|gb|EHJ64588.1| hypothetical protein KGM_21596 [Danaus plexippus]
Length = 406
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 82/161 (50%), Gaps = 33/161 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C CG I D+++L V WH CLRC C C V+
Sbjct: 138 CCACGEPIADRFLLEVGGGA-WHTGCLRC----------CVCAVQ--------------- 171
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
LD + +CF+RD + YCK+DY + FG KC KC D+V +A+ ++YH+ CF C
Sbjct: 172 ---LDRHPSCFLRDRQVYCKQDYAKSFGAKCSKCCRGISSSDWVRKAREQVYHLACFACD 228
Query: 127 VCGKQLVPGDEFALREDGLFCKDDH----EGMDKSSNGENN 163
CG+QL G++FAL ED + CK + +G SS+G+ N
Sbjct: 229 ACGRQLSTGEQFALHEDRVLCKPHYLETLDGGSISSDGKCN 269
>gi|148707589|gb|EDL39536.1| LIM homeobox protein 9, isoform CRA_a [Mus musculus]
Length = 342
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 58 KPALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 92
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 93 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 148
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 149 CFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETL 181
>gi|410979132|ref|XP_003995940.1| PREDICTED: LIM/homeobox protein Lhx2 [Felis catus]
Length = 484
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 8 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 42
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 43 ----KLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLN 98
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 99 CFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEAL 131
>gi|29570244|gb|AAO85392.1| LIM-homeobox protein 9 [Sus scrofa]
Length = 369
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 67 KPALCAGCGGKIADRYYL-LAVDKQWHLRCLKCCEC------------------------ 101
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 102 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLS 157
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 158 CFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETL 190
>gi|17298670|ref|NP_387501.1| LIM homeobox transcription factor 1-alpha [Mus musculus]
gi|27923804|sp|Q9JKU8.1|LMX1A_MOUSE RecName: Full=LIM homeobox transcription factor 1-alpha; AltName:
Full=LIM/homeobox protein 1.1; Short=LMX-1.1; AltName:
Full=LIM/homeobox protein LMX1A
gi|7230571|gb|AAF43012.1|AF226662_1 lim homeodomain-containing transcription factor [Mus musculus]
gi|26336939|dbj|BAC32153.1| unnamed protein product [Mus musculus]
gi|80477081|gb|AAI09168.1| LIM homeobox transcription factor 1 alpha [Mus musculus]
gi|80478204|gb|AAI09169.1| LIM homeobox transcription factor 1 alpha [Mus musculus]
Length = 382
Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 87/189 (46%), Gaps = 39/189 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S+C GC I D+++LR+ D WH C++CA C + L+
Sbjct: 33 SVCEGCQRVISDRFLLRLN-DSFWHEQCVQCASCKEPLE--------------------- 70
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
TCF RD K YCK Y +LF KC C +FVMRA+ +YH+ CFC
Sbjct: 71 ---------TTCFYRDKKLYCKYHYEKLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFC 121
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEG--------MDKSSNGENNNNNTNINNNLHNL 176
C VC +QL GDEF L+E L CK D+E +S+ +++ ++ + H
Sbjct: 122 CCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSLVSPAASDSGKSDDEESLCKSAHGA 181
Query: 177 NNEGSNSGK 185
S GK
Sbjct: 182 GKGASEDGK 190
>gi|354486854|ref|XP_003505592.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like
[Cricetulus griseus]
Length = 382
Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 87/189 (46%), Gaps = 39/189 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S+C GC I D+++LR+ D WH C++CA C + L+
Sbjct: 33 SVCEGCQRVISDRFLLRLN-DSFWHEQCVQCASCKEPLE--------------------- 70
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
TCF RD K YCK Y +LF KC C +FVMRA+ +YH+ CFC
Sbjct: 71 ---------TTCFYRDKKLYCKYHYEKLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFC 121
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEG--------MDKSSNGENNNNNTNINNNLHNL 176
C VC +QL GDEF L+E L CK D+E +S+ +++ ++ + H
Sbjct: 122 CCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSLVSPAASDSGKSDDEESLCKSAHGA 181
Query: 177 NNEGSNSGK 185
S GK
Sbjct: 182 GKGASEDGK 190
>gi|432876050|ref|XP_004072952.1| PREDICTED: LIM/homeobox protein Lhx2-like [Oryzias latipes]
Length = 380
Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 75/147 (51%), Gaps = 30/147 (20%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R++LC GCG +I D+Y L +A D +WH CL+C EC
Sbjct: 70 RVALCAGCGRKIADRYYL-LAVDKQWHMRCLKCCEC------------------------ 104
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 105 ----KLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLN 160
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCK 148
CF C CGK L GD F +++ ++C+
Sbjct: 161 CFTCTTCGKMLTTGDHFGMKDSLVYCR 187
>gi|158187529|ref|NP_001099437.2| LIM homeobox transcription factor 1 alpha [Rattus norvegicus]
Length = 382
Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 87/189 (46%), Gaps = 39/189 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S+C GC I D+++LR+ D WH C++CA C + L+
Sbjct: 33 SVCEGCQRVISDRFLLRLN-DSFWHEQCVQCASCKEPLE--------------------- 70
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
TCF RD K YCK Y +LF KC C +FVMRA+ +YH+ CFC
Sbjct: 71 ---------TTCFYRDKKLYCKYHYEKLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFC 121
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEG--------MDKSSNGENNNNNTNINNNLHNL 176
C VC +QL GDEF L+E L CK D+E +S+ +++ ++ + H
Sbjct: 122 CCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSLVSPAASDSGKSDDEESLCKSAHGA 181
Query: 177 NNEGSNSGK 185
S GK
Sbjct: 182 GKGASEDGK 190
>gi|410922082|ref|XP_003974512.1| PREDICTED: LIM homeobox transcription factor 1-beta-like [Takifugu
rubripes]
Length = 375
Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 73/148 (49%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S+C GC I D++++RV D WH CL+C C Q L
Sbjct: 31 SVCEGCQRPISDRFLMRVN-DSSWHEECLQCTVCQQPL---------------------- 67
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ R+ K YCK DY +LF TKC C +FVMRA +YH+ CFC
Sbjct: 68 --------TTSCYFRERKLYCKHDYQQLFATKCSGCMEKIAPTEFVMRALECVYHLNCFC 119
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C VC +QL GDEF L+E L CK D+E
Sbjct: 120 CCVCDRQLRKGDEFVLKEGQLLCKFDYE 147
>gi|508712|gb|AAB08752.1| LIM-homeobox domain protein [Homo sapiens]
Length = 423
Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 48 RAALCGGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 82
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 83 ----KLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLN 138
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 139 CFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEAL 171
>gi|321477982|gb|EFX88940.1| hypothetical protein DAPPUDRAFT_4176 [Daphnia pulex]
Length = 199
Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 80/160 (50%), Gaps = 30/160 (18%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C CG I D+++++V+ WH+ CLRC+ C LD
Sbjct: 1 CAACGELITDRFLIQVSGR-TWHSTCLRCSVCRTALD----------------------- 36
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
NQ +CFVR G YC+ DY R FG KC +C+ + D+V RA+ +YH+ CF C
Sbjct: 37 NQ-----PSCFVRAGAIYCRADYTRTFGAKCARCSRSISAADWVRRAREHVYHLACFACD 91
Query: 127 VCGKQLVPGDEFALREDGLFCKDDH-EGMDKSSNGENNNN 165
C +QL G+EFAL E + CK + +G+D S + +
Sbjct: 92 ACRRQLSTGEEFALHEGRVLCKTHYLDGLDAGSTSSDETD 131
>gi|432092293|gb|ELK24915.1| LIM/homeobox protein Lhx9, partial [Myotis davidii]
Length = 420
Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 8 KPALCAGCGGKIADRYYL-LAVDKQWHLRCLKCCEC------------------------ 42
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 43 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDAVYHLS 98
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C C K L GD F +++ ++C+ E +
Sbjct: 99 CFTCSTCSKTLATGDHFGMKDGLVYCRAHFESL 131
>gi|76667074|dbj|BAE45356.1| LIM homeodomain type transcription factor Lhx2 [Danio rerio]
Length = 395
Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 86/179 (48%), Gaps = 30/179 (16%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R++LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 49 RVALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 83
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK +Y R F +C +C+L + VMRA++ +YH+
Sbjct: 84 ----KLNLESELTCFDKDGSIYCKEEYYRRFSVQRCARCHLGISASEMVMRARDLVYHLN 139
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNNTNINNNLHNLNNEG 180
CF C C K L GD +++ ++C+ E + + ++ N+ + N L + G
Sbjct: 140 CFTCTTCNKMLTTGDHVGMKDSLVYCRLHFETLIQETSTHFNHTDVAPNKGLSSTGPLG 198
>gi|291290877|ref|NP_001167469.1| LIM homeobox 2 [Xenopus laevis]
gi|37720481|gb|AAN41461.1| LIM homeobox protein 2 [Xenopus laevis]
Length = 419
Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 75/147 (51%), Gaps = 30/147 (20%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 70 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 104
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 105 ----KLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLN 160
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCK 148
CF C C K L GD F ++++ ++C+
Sbjct: 161 CFTCNTCNKMLTTGDHFGMKDNLVYCR 187
>gi|547859|sp|Q04650.1|LMX1A_MESAU RecName: Full=LIM homeobox transcription factor 1-alpha; AltName:
Full=LIM/homeobox protein LMX1A; Short=LIM/homeobox
protein 1; Short=LMX-1
gi|587461|emb|CAA57163.1| lmx1.1 [Mesocricetus auratus]
Length = 382
Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 74/148 (50%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S+C GC I D+++LR+ D WH C++CA C + L+
Sbjct: 33 SVCEGCQRVISDRFLLRLN-DSFWHEQCVQCASCKEPLE--------------------- 70
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
TCF RD K YCK Y +LF KC C +FVMRA+ +YH+ CFC
Sbjct: 71 ---------TTCFYRDKKLYCKYHYEKLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFC 121
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C VC +QL GDEF L+E L CK D+E
Sbjct: 122 CCVCERQLQKGDEFVLKEGQLLCKGDYE 149
>gi|91078266|ref|XP_971202.1| PREDICTED: similar to GA10520-PA [Tribolium castaneum]
Length = 343
Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 72/143 (50%), Gaps = 29/143 (20%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
LC CG I D+++L V+ WHA CLRC C C ++
Sbjct: 82 LCSACGEPISDKFLLEVSGR-SWHARCLRC----------CVCQLQ-------------- 116
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
LD +CF+RD YCK DY + FG KC C+ D+V +A++ +YH+ CF C
Sbjct: 117 ----LDRQPSCFIRDRAIYCKADYAKSFGAKCSVCSRGISSSDWVRKARDHVYHLACFAC 172
Query: 126 VVCGKQLVPGDEFALREDGLFCK 148
C +QL G+EFAL ED + CK
Sbjct: 173 AACHRQLSTGEEFALHEDRVLCK 195
>gi|301618805|ref|XP_002938795.1| PREDICTED: LIM/homeobox protein Lhx2-like [Xenopus (Silurana)
tropicalis]
Length = 419
Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 75/147 (51%), Gaps = 30/147 (20%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 70 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 104
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 105 ----KLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLN 160
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCK 148
CF C C K L GD F ++++ ++C+
Sbjct: 161 CFTCNTCNKMLTTGDHFGMKDNLVYCR 187
>gi|379698940|ref|NP_001243941.1| arrowhead PA [Bombyx mori]
gi|346223348|dbj|BAK78925.1| arrowhead PA [Bombyx mori]
Length = 274
Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 78/153 (50%), Gaps = 30/153 (19%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C CG I D+++L V WH CLRC C C V+
Sbjct: 8 CCACGEPIADRFLLEVG-GAAWHTGCLRC----------CVCAVQ--------------- 41
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
LD + +CF+RD + YCK+DY + FG KC KC D+V +A+ ++YH+ CF C
Sbjct: 42 ---LDRHPSCFLRDRQVYCKQDYAKSFGAKCSKCCRGISSSDWVRKAREQVYHLACFACD 98
Query: 127 VCGKQLVPGDEFALREDGLFCKDDH-EGMDKSS 158
CG+QL G++FAL ED + CK + E +D S
Sbjct: 99 ACGRQLSTGEQFALHEDRVLCKPHYLETLDGGS 131
>gi|82524343|ref|NP_001032320.1| LIM/homeobox protein Lhx9 isoform 2 [Danio rerio]
gi|76667071|dbj|BAE45355.1| LIM homeodomain type transcription factor Lhx9 [Danio rerio]
Length = 395
Score = 102 bits (255), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 73/147 (49%), Gaps = 30/147 (20%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L A D +WH CL+C EC
Sbjct: 67 KPALCAGCGGKISDRYYLH-AVDKQWHLRCLKCCEC------------------------ 101
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C C+L + VMRA++ +YH+
Sbjct: 102 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCAHCHLGISASEMVMRARDSVYHLS 157
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCK 148
CF C C K L GD F ++++ ++C+
Sbjct: 158 CFTCTTCNKTLTTGDHFGMKDNLVYCR 184
>gi|345132131|gb|AEN75258.1| Lim1 [Neanthes arenaceodentata]
Length = 498
Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 87/179 (48%), Gaps = 38/179 (21%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+++ +C GC I D+++L V D WHA C++C EC L + C
Sbjct: 21 KKMVMCAGCERPILDRFLLNVL-DRAWHAKCVQCVECRSNLTDKC--------------- 64
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
F RDGK YC+ D+ R FGTKC C+ D V RA+NK++H++
Sbjct: 65 ---------------FSRDGKLYCREDFFRRFGTKCGGCSQGISPNDLVRRARNKVFHLK 109
Query: 122 CFCCVVCGKQLVPGDE-FALREDGLFCKDDH------EGMDKSSNGENNNNNTNINNNL 173
CF C+VC KQL G+E + L E+ CK+D+ G D NG+ + ++ L
Sbjct: 110 CFTCMVCRKQLSTGEELYVLDENKFICKEDYLSSKLQGGSDHEDNGDTELDTKDMLEKL 168
>gi|348516128|ref|XP_003445591.1| PREDICTED: LIM homeobox transcription factor 1-beta.1-like
[Oreochromis niloticus]
Length = 399
Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 73/148 (49%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S+C GC I D++++RV D WH CL+C C Q L
Sbjct: 54 SVCEGCQRPISDRFLMRVN-DSSWHEECLQCTVCQQPLTN-------------------- 92
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ R+ K YCK DY +LF TKC C +FVMRA +YH+ CFC
Sbjct: 93 ----------SCYFRERKLYCKHDYQQLFATKCSGCMEKIAPTEFVMRALECVYHLNCFC 142
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C VC +QL GDEF L+E L CK D+E
Sbjct: 143 CCVCDRQLRKGDEFVLKEGQLLCKIDYE 170
>gi|260794979|ref|XP_002592484.1| LIM class homeodomain transcription factor, apterous subclass
[Branchiostoma floridae]
gi|229277704|gb|EEN48495.1| LIM class homeodomain transcription factor, apterous subclass
[Branchiostoma floridae]
Length = 330
Score = 102 bits (254), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 79/152 (51%), Gaps = 30/152 (19%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCG +I D++ L A D +WH+ACL+C C C VR
Sbjct: 15 CGGCGEKIQDRFFLH-AVDRQWHSACLKC----------CECDVR--------------- 48
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
LD TCF +DG+ YC+ DY R F +C +C+L + VMRA++ +YH+ CF C
Sbjct: 49 ---LDCELTCFSKDGRIYCREDYYRRFAVQRCGRCHLGITAREMVMRARDSVYHLACFTC 105
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKS 157
V C K L GDEF ++ ++C+ +E +S
Sbjct: 106 VTCDKALTTGDEFGMQGSAIYCRYHYETFMRS 137
>gi|270004863|gb|EFA01311.1| arrowhead [Tribolium castaneum]
Length = 349
Score = 102 bits (254), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 79/159 (49%), Gaps = 30/159 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
LC CG I D+++L V+ WHA CLRC C C ++
Sbjct: 68 LCSACGEPISDKFLLEVS-GRSWHARCLRC----------CVCQLQ-------------- 102
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
LD +CF+RD YCK DY + FG KC C+ D+V +A++ +YH+ CF C
Sbjct: 103 ----LDRQPSCFIRDRAIYCKADYAKSFGAKCSVCSRGISSSDWVRKARDHVYHLACFAC 158
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDH-EGMDKSSNGENN 163
C +QL G+EFAL ED + CK + E +D + ++
Sbjct: 159 AACHRQLSTGEEFALHEDRVLCKAHYLETLDGGTTSSDD 197
>gi|301763072|ref|XP_002916962.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx8-like
[Ailuropoda melanoleuca]
Length = 574
Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats.
Identities = 52/161 (32%), Positives = 79/161 (49%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V DL WH CL C+ C L + +C+++
Sbjct: 302 VCNSCGLEIVDKYLLKVN-DLCWHVRCLSCSVCRTSLGRHTSCYIK-------------- 346
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
D +CK DY R +GT+C +C + D+V RAK +YH+ CF C
Sbjct: 347 --------------DKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFAC 392
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EFAL E+ + C+ ++ M + E N N
Sbjct: 393 FSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNLKREVENGN 433
>gi|326923371|ref|XP_003207910.1| PREDICTED: LIM/homeobox protein Lhx3-like [Meleagris gallopavo]
Length = 399
Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 83/185 (44%), Gaps = 34/185 (18%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ LC GC I D++IL+V D WH+ CL+C++C L E C
Sbjct: 29 IPLCAGCNQHIVDRFILKVL-DRHWHSKCLKCSDCQTQLAEKC----------------- 70
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F R YCK D+ + FGTKC C V RA++ +YH+ CF
Sbjct: 71 -------------FSRGDGVYCKEDFFKRFGTKCAACQQGIPPTQVVRRAQDFVYHLHCF 117
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHEGMDK--SSNGENNNNNTNINNNLHNLNNEG 180
C+VC +QL GDEF L ED L CK D+E + + + T L L N
Sbjct: 118 ACIVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAESTAKRPRTTITAKQLETLKNAY 177
Query: 181 SNSGK 185
+NS K
Sbjct: 178 NNSPK 182
>gi|328925124|dbj|BAK19077.1| apterous B alpha [Bombyx mori]
Length = 349
Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 74/147 (50%), Gaps = 30/147 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCGG+I D+Y L +A D +WH +CLRC EC LD TCF RDG Y
Sbjct: 18 CAGCGGKIQDRYYL-LAVDRQWHGSCLRCCECRLPLDTELTCFSRDGNIY---------- 66
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK-CEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
CK DY RLF K C +C + VMRA++ +YH+ CF C
Sbjct: 67 ------------------CKEDYYRLFCVKRCGRCCNGITANELVMRARDLVYHLNCFTC 108
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHE 152
V CG QL GD F ++ ++C+ ++
Sbjct: 109 VACGTQLSKGDVFGMKGGLVYCRPHYD 135
>gi|157134682|ref|XP_001663345.1| arrowhead [Aedes aegypti]
gi|108870378|gb|EAT34603.1| AAEL013168-PA, partial [Aedes aegypti]
Length = 306
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 75/154 (48%), Gaps = 29/154 (18%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
++ L C CG I D+Y+L V WH+ACLRC CH LD +CF+
Sbjct: 2 QKELRSCTACGEPISDKYLLDVG-GCSWHSACLRCCICHNPLDHQPSCFL---------- 50
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
RD + YCK DY + FG KC +C + D+V RA+ +H+
Sbjct: 51 ------------------RDRQIYCKNDYTKTFGAKCARCCRSISASDWVRRARELTFHL 92
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
CF C CG+QL G++FAL +D + CK + M
Sbjct: 93 ACFACDSCGRQLSTGEQFALVDDKVLCKTHYSEM 126
>gi|405977546|gb|EKC41989.1| LIM/homeobox protein Lhx3 [Crassostrea gigas]
Length = 432
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 84/157 (53%), Gaps = 11/157 (7%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD--- 60
+ C GCG I D++IL+V D WH+ CL+C +CH L + C F + K +CK D
Sbjct: 44 IPKCAGCGEPILDRFILKVL-DRSWHSRCLQCHDCHARLSDKC--FSKGEKVFCKDDFFR 100
Query: 61 ----YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNK 116
Y+S + + + R KT +R +GTKC C + V RA++
Sbjct: 101 WSYVYLSMQPDLIGPLSDHGVTRPPKTVRERVGALRYGTKCAGCEKGIPPTEVVRRAQDN 160
Query: 117 IYHVQCFCCVVCGKQLVPGDEFALRED-GLFCKDDHE 152
+YH++CF C++C +QL GDEF L ED L CK D+E
Sbjct: 161 VYHLECFACLMCSRQLNTGDEFYLMEDRKLVCKADYE 197
>gi|224058880|ref|XP_002190501.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Taeniopygia
guttata]
Length = 379
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 73/148 (49%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S+C GC I D+++LR+ L WH C++CA C + L
Sbjct: 31 SVCEGCQRVILDRFLLRLNDSL-WHEQCVQCASCKEPL---------------------- 67
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
TCF RD K YCK DY +LF KC C + VMRA+ +YH+ CFC
Sbjct: 68 --------QTTCFYRDKKLYCKLDYEKLFAVKCAGCLEPIAPSELVMRAQKSVYHLHCFC 119
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C VC ++L GDEF L+E L CK D+E
Sbjct: 120 CCVCERRLQKGDEFVLKEGQLLCKGDYE 147
>gi|291240697|ref|XP_002740254.1| PREDICTED: LIM class homeodomain transcription factor, Lhx6/8
subclass-like [Saccoglossus kowalevskii]
Length = 283
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 81/155 (52%), Gaps = 30/155 (19%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C+GC I D+Y+L+V WH CLRC C + G
Sbjct: 21 VCLGCTSPIQDRYLLKVG-TRSWHVRCLRC------------CICQTG------------ 55
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L +CF +D YCK DY+R FGTKC +C N + D+V +AKN +YH+ CF C
Sbjct: 56 ----LGGQQSCFTKDDNIYCKMDYIRQFGTKCSRCMRNIQSNDWVRKAKNHVYHLACFAC 111
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDH-EGMDKSSN 159
C +QL G+EFA++E+ + CK + E ++ SS+
Sbjct: 112 DNCKRQLSTGEEFAMQENKVLCKTHYLELLENSSD 146
>gi|348535176|ref|XP_003455077.1| PREDICTED: LIM/homeobox protein Lhx2-like [Oreochromis niloticus]
Length = 417
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 74/147 (50%), Gaps = 30/147 (20%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R++LC GCG +I D+Y L +A D +WH CL+C EC
Sbjct: 70 RVALCAGCGRKIADRYYL-LAVDKQWHMRCLKCCEC------------------------ 104
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 105 ----KLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLN 160
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCK 148
CF C C K L GD F +++ ++C+
Sbjct: 161 CFTCTTCSKMLTTGDHFGMKDSLVYCR 187
>gi|301616969|ref|XP_002937919.1| PREDICTED: LIM/homeobox protein LMX-1.2-like isoform 2 [Xenopus
(Silurana) tropicalis]
Length = 393
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 73/148 (49%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GC I D++++RV + WH CL+C C Q L
Sbjct: 54 AVCEGCQRPISDRFLMRVN-EASWHEECLQCTVCQQPL---------------------- 90
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ RD K +CK+DY +LF KC C +FVMRA +YH+ CFC
Sbjct: 91 --------TTSCYFRDRKLFCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLSCFC 142
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C VC +QL GDEF L+E L CK D+E
Sbjct: 143 CCVCERQLRKGDEFVLKEGQLLCKSDYE 170
>gi|224493106|sp|A2PZF9.1|LHX9_RANRU RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
gi|124377598|dbj|BAF46216.1| LIM homeobox gene 9 alpha protein [Glandirana rugosa]
Length = 379
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 72/145 (49%), Gaps = 30/145 (20%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 49 KPTLCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 83
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA+ +YH+
Sbjct: 84 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEIVMRARESVYHLS 139
Query: 122 CFCCVVCGKQLVPGDEFALREDGLF 146
CF C C K L GD F ++E+ ++
Sbjct: 140 CFTCTTCNKTLSTGDHFGMKENLVY 164
>gi|410903462|ref|XP_003965212.1| PREDICTED: LIM/homeobox protein Lhx3-like isoform 2 [Takifugu
rubripes]
Length = 406
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 84/185 (45%), Gaps = 34/185 (18%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ +C GC I D++IL+V D WH+ CL+C++C L E C
Sbjct: 32 IPVCAGCNQHIVDRFILKVL-DRHWHSKCLKCSDCQAQLAEKC----------------- 73
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F R YCK D+ + FGTKC C V RA++ +YH+ CF
Sbjct: 74 -------------FSRGDSVYCKEDFFKRFGTKCAACQQGIPPTQVVRRAQDFVYHLHCF 120
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHE-GMDKSSNGENNNNNTNIN-NNLHNLNNEG 180
C+VC +QL GDE+ L ED L CK D+E + ++ T I L L N
Sbjct: 121 ACIVCKRQLATGDEYYLMEDSRLVCKTDYETAKQREADSTAKRPRTTITAKQLETLKNAY 180
Query: 181 SNSGK 185
+NS K
Sbjct: 181 NNSPK 185
>gi|148227168|ref|NP_001083902.1| LIM homeobox transcription factor 1-beta.1 [Xenopus laevis]
gi|82216057|sp|Q8UVR3.1|LMX1B_XENLA RecName: Full=LIM homeobox transcription factor 1-beta.1; AltName:
Full=LIM homeobox protein 1b; Short=Xlmx1b
gi|16974694|gb|AAL32444.1|AF414086_1 LIM homeobox protein 1b [Xenopus laevis]
Length = 400
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 73/148 (49%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GC I D++++RV + WH CL+C C Q L
Sbjct: 54 AVCEGCQRPISDRFLMRVN-EASWHEECLQCTVCQQPL---------------------- 90
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ RD K +CK+DY +LF KC C +FVMRA +YH+ CFC
Sbjct: 91 --------TTSCYFRDRKLFCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLSCFC 142
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C VC +QL GDEF L+E L CK D+E
Sbjct: 143 CCVCERQLRKGDEFVLKEGQLLCKSDYE 170
>gi|301616967|ref|XP_002937918.1| PREDICTED: LIM/homeobox protein LMX-1.2-like isoform 1 [Xenopus
(Silurana) tropicalis]
Length = 400
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 73/148 (49%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GC I D++++RV + WH CL+C C Q L
Sbjct: 54 AVCEGCQRPISDRFLMRVN-EASWHEECLQCTVCQQPL---------------------- 90
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ RD K +CK+DY +LF KC C +FVMRA +YH+ CFC
Sbjct: 91 --------TTSCYFRDRKLFCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLSCFC 142
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C VC +QL GDEF L+E L CK D+E
Sbjct: 143 CCVCERQLRKGDEFVLKEGQLLCKSDYE 170
>gi|443696308|gb|ELT97041.1| hypothetical protein CAPTEDRAFT_43751, partial [Capitella teleta]
Length = 271
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 76/148 (51%), Gaps = 30/148 (20%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
LC GCG +I D+Y L+ A + WHA CLRCA+C
Sbjct: 1 LCAGCGEKITDRYYLQ-AVERAWHANCLRCAQC--------------------------- 32
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTK-CEKCNLNFKREDFVMRAKNKIYHVQCFC 124
LD TC+ RDG +CK DY RLF K C C+L + VM+A++ +YH+ CF
Sbjct: 33 -KLPLDSEVTCYARDGSIFCKEDYYRLFAIKRCSGCHLAISANELVMKARDSVYHMNCFT 91
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C C K L+ G+ F ++E+ ++C+ +E
Sbjct: 92 CASCHKLLITGEHFGMKENLIYCRMHYE 119
>gi|410903460|ref|XP_003965211.1| PREDICTED: LIM/homeobox protein Lhx3-like isoform 1 [Takifugu
rubripes]
Length = 399
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 85/187 (45%), Gaps = 34/187 (18%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+ + +C GC I D++IL+V D WH+ CL+C++C L E C
Sbjct: 23 QEIPVCAGCNQHIVDRFILKVL-DRHWHSKCLKCSDCQAQLAEKC--------------- 66
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
F R YCK D+ + FGTKC C V RA++ +YH+
Sbjct: 67 ---------------FSRGDSVYCKEDFFKRFGTKCAACQQGIPPTQVVRRAQDFVYHLH 111
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHE-GMDKSSNGENNNNNTNIN-NNLHNLNN 178
CF C+VC +QL GDE+ L ED L CK D+E + ++ T I L L N
Sbjct: 112 CFACIVCKRQLATGDEYYLMEDSRLVCKTDYETAKQREADSTAKRPRTTITAKQLETLKN 171
Query: 179 EGSNSGK 185
+NS K
Sbjct: 172 AYNNSPK 178
>gi|380027052|ref|XP_003697250.1| PREDICTED: LIM/homeobox protein Lhx9-like [Apis florea]
Length = 390
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 69/146 (47%), Gaps = 29/146 (19%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCG +I +++ LR A D WH CLRC C C V
Sbjct: 38 CGGCGREIAERWYLRAA-DRAWHCGCLRC----------CHCRVP--------------- 71
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
L TCF RDG YCK DY RLF +C +C + VMRA++ +YHV CF C
Sbjct: 72 ---LAAELTCFARDGNIYCKEDYYRLFAGRCSRCRAGISATELVMRARDLVYHVACFTCA 128
Query: 127 VCGKQLVPGDEFALREDGLFCKDDHE 152
CG L GD F R+ ++C+ +E
Sbjct: 129 SCGTPLNKGDHFGQRDGLVYCRPHYE 154
>gi|383792181|ref|NP_001244317.1| LIM homeobox transcription factor 1-alpha [Gallus gallus]
Length = 380
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 74/148 (50%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S+C GC I D+++LR+ L WH C++C C + L
Sbjct: 33 SVCEGCQRVIADRFLLRLNDSL-WHERCVQCTSCKEPL---------------------- 69
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+ TCF RD K YCK DY +LF KC C + + VMRA+ +YH+ CFC
Sbjct: 70 --------HTTCFYRDKKLYCKLDYEKLFAVKCAGCLESIAPSELVMRAQQSVYHLHCFC 121
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C VC ++L GDEF L+E L CK D+E
Sbjct: 122 CCVCERRLQKGDEFVLKEGQLLCKGDYE 149
>gi|391759011|dbj|BAM22649.1| LIM homeobox 3/4, partial [Eptatretus burgeri]
Length = 205
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 83/186 (44%), Gaps = 36/186 (19%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
+C GC I D+++L+ A + WHA+CLRC +C L E C
Sbjct: 30 PVCGGCSLPIGDRFLLK-ALERSWHASCLRCRDCQSPLSERC------------------ 70
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
F RDG YCK D+ R FGTKC C V +A+ +++H+ CF
Sbjct: 71 ------------FSRDGALYCKEDFFRRFGTKCAGCRQGIPPSQAVRKAQERVFHLHCFA 118
Query: 125 CVVCGKQLVPGDEFALREDG-LFCKDDHEGM---DKSSNGENNNNNTNIN-NNLHNLNNE 179
C +CG+QL GD F L +D L C+ D+ G D +G T I L L N
Sbjct: 119 CSLCGRQLATGDLFYLLDDARLVCQHDYPGTAHRDSEVDGAAKRPRTTITAKQLETLKNA 178
Query: 180 GSNSGK 185
+S K
Sbjct: 179 YKSSPK 184
>gi|156364672|ref|XP_001626470.1| predicted protein [Nematostella vectensis]
gi|156213347|gb|EDO34370.1| predicted protein [Nematostella vectensis]
Length = 304
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 79/153 (51%), Gaps = 30/153 (19%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
CVGC +I D+Y+++V+ WH CL+C C DE
Sbjct: 28 CVGCEAKIVDRYLVKVS-GRAWHTKCLKCCLCS---DE---------------------- 61
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
L TC+ +DGK YCK DY R FGTKC +C + D+V RAKN +YH+ CF C
Sbjct: 62 ---LGREATCYTKDGKIYCKADYARQFGTKCARCGRSIHANDWVRRAKNCVYHLACFACD 118
Query: 127 VCGKQLVPGDEFALREDGLFCKDDH-EGMDKSS 158
C +QL G+EFAL++ + CK + E +D S
Sbjct: 119 NCKRQLSTGEEFALKDGHVLCKLHYLEALDTSP 151
>gi|326924822|ref|XP_003208624.1| PREDICTED: LOW QUALITY PROTEIN: LIM homeobox transcription factor
1-alpha-like [Meleagris gallopavo]
Length = 367
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 74/148 (50%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S+C GC I D+++LR+ L WH C++C C + L
Sbjct: 20 SVCEGCQRVIADRFLLRLNDSL-WHERCVQCTSCKEPL---------------------- 56
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+ TCF RD K YCK DY +LF KC C + + VMRA+ +YH+ CFC
Sbjct: 57 --------HTTCFYRDKKLYCKLDYEKLFAVKCAGCLESIAPSELVMRAQQSVYHLHCFC 108
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C VC ++L GDEF L+E L CK D+E
Sbjct: 109 CCVCERRLQKGDEFVLKEGQLLCKGDYE 136
>gi|270007707|gb|EFA04155.1| hypothetical protein TcasGA2_TC014400 [Tribolium castaneum]
Length = 415
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 92/192 (47%), Gaps = 43/192 (22%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECH-QFLDENCTCFVRDGKTYCKRDYV 62
+ C GC I D++IL+VA D WHA CL+C++C Q D+ CF R+G
Sbjct: 65 IPKCGGCHELILDRFILKVA-DRTWHAKCLQCSDCRIQLTDK---CFARNG--------- 111
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQC 122
+ +CK D+ + FGTKC C+L V RA++ +YH+QC
Sbjct: 112 -------------------QLFCKEDFFKRFGTKCAGCDLGIPPTQVVRRAQDNVYHLQC 152
Query: 123 FCCVVCGKQLVPGDEFALRED-GLFCKDDHEGMDKSSNGE-------NNNNNTNIN-NNL 173
F CV+C +QL GDEF L ED L CK D+E KS E N T I L
Sbjct: 153 FSCVMCARQLNTGDEFYLMEDRKLVCKPDYEAA-KSKAAECLDGDQPNKRPRTTITAKQL 211
Query: 174 HNLNNEGSNSGK 185
L N +NS K
Sbjct: 212 ETLKNAYNNSPK 223
>gi|189237525|ref|XP_973330.2| PREDICTED: similar to lim homeobox protein [Tribolium castaneum]
Length = 448
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 92/192 (47%), Gaps = 43/192 (22%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECH-QFLDENCTCFVRDGKTYCKRDYV 62
+ C GC I D++IL+VA D WHA CL+C++C Q D+ CF R+G
Sbjct: 98 IPKCGGCHELILDRFILKVA-DRTWHAKCLQCSDCRIQLTDK---CFARNG--------- 144
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQC 122
+ +CK D+ + FGTKC C+L V RA++ +YH+QC
Sbjct: 145 -------------------QLFCKEDFFKRFGTKCAGCDLGIPPTQVVRRAQDNVYHLQC 185
Query: 123 FCCVVCGKQLVPGDEFALRED-GLFCKDDHEGMDKSSNGE-------NNNNNTNIN-NNL 173
F CV+C +QL GDEF L ED L CK D+E KS E N T I L
Sbjct: 186 FSCVMCARQLNTGDEFYLMEDRKLVCKPDYEAA-KSKAAECLDGDQPNKRPRTTITAKQL 244
Query: 174 HNLNNEGSNSGK 185
L N +NS K
Sbjct: 245 ETLKNAYNNSPK 256
>gi|47214973|emb|CAG01307.1| unnamed protein product [Tetraodon nigroviridis]
Length = 396
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 73/147 (49%), Gaps = 30/147 (20%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCG +I D+Y L +A D +WH CLRC EC
Sbjct: 49 RGALCAGCGRKIVDRYYL-LAVDKQWHMRCLRCCEC------------------------ 83
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 84 ----KLHLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLN 139
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCK 148
CF C C K L GD F +++ ++C+
Sbjct: 140 CFTCTTCSKMLTTGDHFGMKDSLVYCR 166
>gi|444723048|gb|ELW63713.1| LIM/homeobox protein Lhx5 [Tupaia chinensis]
Length = 610
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 54/159 (33%), Positives = 74/159 (46%), Gaps = 32/159 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 5 CAGCERPILDRFLLNVL-DRAWHIKCVQCCECKTNLSEKC-------------------- 43
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK YCK D+ R FGTKC C D V +A++K++H+ CF C+
Sbjct: 44 ----------FSREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCM 93
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDHEGMDKSSNGENNN 164
VC KQL G+E + + E+ CKDD+ G N+
Sbjct: 94 VCNKQLSTGEELYVIDENKFVCKDDYLSSSSLKEGSLNS 132
>gi|309243111|ref|NP_001020338.2| LIM homeobox transcription factor 1, beta 1 [Danio rerio]
gi|48375211|gb|AAT42258.1| LIM homeodomain protein Lmx1b.1 [Danio rerio]
gi|190337176|gb|AAI62952.1| LIM homeobox transcription factor 1, beta 1 [Danio rerio]
gi|190338183|gb|AAI62932.1| LIM homeobox transcription factor 1, beta 1 [Danio rerio]
Length = 375
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 74/148 (50%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GC I D++++RV + WH CL+CA C Q L
Sbjct: 31 AVCEGCQRPISDRFLMRVN-ESSWHEECLQCAVCQQPL---------------------- 67
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ R+ K YCK DY +LF TKC C +FVMRA +YH+ CFC
Sbjct: 68 --------TTSCYFRERKLYCKYDYQQLFATKCSGCLEKIAPTEFVMRALECVYHLNCFC 119
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C VC +QL GDEF L++ L CK D+E
Sbjct: 120 CCVCDRQLRKGDEFVLKDGQLLCKSDYE 147
>gi|62461837|gb|AAX83055.1| LIM homeodomain protein [Danio rerio]
Length = 375
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 74/148 (50%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GC I D++++RV + WH CL+CA C Q L
Sbjct: 31 AVCEGCQRPISDRFLMRVN-ESSWHEECLQCAVCQQPL---------------------- 67
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ R+ K YCK DY +LF TKC C +FVMRA +YH+ CFC
Sbjct: 68 --------TTSCYFRERKLYCKYDYQQLFATKCSGCLEKIAPTEFVMRALECVYHLNCFC 119
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C VC +QL GDEF L++ L CK D+E
Sbjct: 120 CCVCDRQLRKGDEFVLKDGQLLCKSDYE 147
>gi|390356846|ref|XP_785118.3| PREDICTED: LIM/homeobox protein Awh-like [Strongylocentrotus
purpuratus]
Length = 335
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 75/145 (51%), Gaps = 28/145 (19%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCG I D+Y+LR+ L WH++CLRC EC
Sbjct: 37 CAGCGKAIIDRYLLRIGRGLSWHSSCLRCLEC---------------------------- 68
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
++ L + +C+ +D +C++ Y R FGTKC +C N D+V RA+ IYH+ CF C
Sbjct: 69 DESLSSHQSCYFKDQNVFCRKCYSREFGTKCARCLRNIDASDWVRRARENIYHLACFACD 128
Query: 127 VCGKQLVPGDEFALREDGLFCKDDH 151
C +QL G+EFA+ E+ + CK +
Sbjct: 129 NCKRQLSTGEEFAMIENRVLCKSHY 153
>gi|196049633|pdb|2RGT|A Chain A, Crystal Structure Of Lhx3 Lim Domains 1 And 2 With The
Binding Domain Of Isl1
gi|196049634|pdb|2RGT|B Chain B, Crystal Structure Of Lhx3 Lim Domains 1 And 2 With The
Binding Domain Of Isl1
Length = 169
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 74/150 (49%), Gaps = 32/150 (21%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ +C GC I D++IL+ A D WH+ CL+C++CH L E C
Sbjct: 6 IPMCAGCDQHILDRFILK-ALDRHWHSKCLKCSDCHVPLAERC----------------- 47
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F R YCK D+ + FGTKC C L V RA++ +YH+ CF
Sbjct: 48 -------------FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCF 94
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHE 152
CVVC +QL GDEF L ED L CK D+E
Sbjct: 95 ACVVCKRQLATGDEFYLMEDSRLVCKADYE 124
>gi|6572499|gb|AAF17291.1| LHX3 protein [Homo sapiens]
gi|6572501|gb|AAF17292.1| LHX3 protein [Homo sapiens]
Length = 370
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 83/185 (44%), Gaps = 34/185 (18%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ LC G I D++IL+ A D WH+ CL+C++CH L E C
Sbjct: 1 IPLCAGRDQHILDRFILK-ALDRHWHSKCLKCSDCHTPLAERC----------------- 42
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F R YCK D+ + FGTKC C L V RA++ +YH+ CF
Sbjct: 43 -------------FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCF 89
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHE-GMDKSSNGENNNNNTNIN-NNLHNLNNEG 180
CVVC +QL GDEF L ED L CK D+E + + T I L L +
Sbjct: 90 ACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKSAY 149
Query: 181 SNSGK 185
+ S K
Sbjct: 150 NTSPK 154
>gi|295656539|gb|ADG26732.1| Lhx1/5 [Platynereis dumerilii]
Length = 291
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 85/179 (47%), Gaps = 38/179 (21%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ +C GC I D+++L V D WHA C++C EC L + C
Sbjct: 1 MVVCAGCDRPILDRFLLNVL-DRAWHAQCVQCTECKAHLTDKC----------------- 42
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F R+GK YC+ D+ R FGTKC C+ D V RA+NK++H++CF
Sbjct: 43 -------------FSREGKLYCRDDFFRRFGTKCGGCSQGISPNDLVRRARNKVFHLKCF 89
Query: 124 CCVVCGKQLVPGDE-FALREDGLFCKDDH------EGMDKSSNGENNNNNTNINNNLHN 175
C+VC KQL G+E + L E+ CK+D+ G D NGE + + L N
Sbjct: 90 TCMVCRKQLSTGEELYVLDENKFICKEDYLSSKLQGGSDHEENGEPEMDTKEMFEKLDN 148
>gi|410929509|ref|XP_003978142.1| PREDICTED: LIM/homeobox protein Lhx2-like [Takifugu rubripes]
Length = 417
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 74/147 (50%), Gaps = 30/147 (20%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R++LC GCG +I D+Y L +A D +WH CL+C EC
Sbjct: 70 RVALCAGCGRKIVDRYYL-LAVDKQWHMRCLKCCEC------------------------ 104
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+
Sbjct: 105 ----KLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLN 160
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCK 148
CF C C K L GD F +++ ++C+
Sbjct: 161 CFTCTTCSKMLTTGDHFGMKDSLVYCR 187
>gi|328787166|ref|XP_003250891.1| PREDICTED: LIM/homeobox protein Lhx9-like [Apis mellifera]
Length = 390
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 69/146 (47%), Gaps = 29/146 (19%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCG +I +++ LR A D WH CLRC C C V
Sbjct: 38 CGGCGREIAERWYLRAA-DRAWHCGCLRC----------CHCRVP--------------- 71
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
L TCF RDG YCK DY RLF +C +C + VMRA++ +YHV CF C
Sbjct: 72 ---LAAELTCFARDGNIYCKEDYYRLFAGRCSRCRAGISATELVMRARDLVYHVACFTCA 128
Query: 127 VCGKQLVPGDEFALREDGLFCKDDHE 152
CG L GD F R+ ++C+ +E
Sbjct: 129 SCGTPLNKGDYFGQRDGLVYCRPHYE 154
>gi|190613352|pdb|2JTN|A Chain A, Nmr Solution Structure Of A Ldb1-Lid:lhx3-Lim Complex
Length = 182
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 74/150 (49%), Gaps = 32/150 (21%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ +C GC I D++IL+ A D WH+ CL+C++CH L E C
Sbjct: 60 IPMCAGCDQHILDRFILK-ALDRHWHSKCLKCSDCHVPLAERC----------------- 101
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F R YCK D+ + FGTKC C L V RA++ +YH+ CF
Sbjct: 102 -------------FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCF 148
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHE 152
CVVC +QL GDEF L ED L CK D+E
Sbjct: 149 ACVVCKRQLATGDEFYLMEDSRLVCKADYE 178
>gi|334853818|gb|AEH05849.1| Lhx3, partial [Capra hircus]
gi|334853820|gb|AEH05850.1| Lhx3, partial [Capra hircus]
Length = 124
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 74/150 (49%), Gaps = 32/150 (21%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ LC GC I D++IL+ A D WH+ CL+C++CH L E
Sbjct: 1 IPLCAGCDQHILDRFILK-ALDRHWHSKCLKCSDCHAPLAER------------------ 41
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
CF R YCK D+ + FGTKC C L V RA++ +YH+ CF
Sbjct: 42 ------------CFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCF 89
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHE 152
CVVC +QL GDEF L ED L CK D+E
Sbjct: 90 ACVVCKRQLATGDEFYLMEDSRLVCKADYE 119
>gi|124377600|dbj|BAF46217.1| LIM homeobox gene 9 beta protein [Glandirana rugosa]
Length = 347
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 72/145 (49%), Gaps = 30/145 (20%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 49 KPTLCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 83
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA+ +YH+
Sbjct: 84 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEIVMRARESVYHLS 139
Query: 122 CFCCVVCGKQLVPGDEFALREDGLF 146
CF C C K L GD F ++E+ ++
Sbjct: 140 CFTCTTCNKTLSTGDHFGMKENLVY 164
>gi|291237424|ref|XP_002738638.1| PREDICTED: Lim homeobox transcription factor [Saccoglossus
kowalevskii]
Length = 441
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 77/148 (52%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
+LC GC I D++++RV + WH CL+C+ C L
Sbjct: 39 ALCAGCQQPIEDRFLMRVMEN-SWHEQCLQCSVCQSPLSR-------------------- 77
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ +D K YCK DY +LFGTKC C + + VMRA +YH++CF
Sbjct: 78 ----------SCYFKDRKLYCKGDYEKLFGTKCNGCLQSITSNELVMRALCNVYHLRCFN 127
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C++C ++L GDEF +R++ LFCK D+E
Sbjct: 128 CIICNQRLQKGDEFVVRDNQLFCKVDYE 155
>gi|47218680|emb|CAG12404.1| unnamed protein product [Tetraodon nigroviridis]
Length = 444
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 84/185 (45%), Gaps = 34/185 (18%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ +C GC I D++IL+V + WH+ CL+C++C L E C
Sbjct: 2 IPVCAGCNQHIVDRFILKVL-ERHWHSKCLKCSDCQAQLAEKC----------------- 43
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F R YCK D+ + FGTKC C V RA++ +YH+ CF
Sbjct: 44 -------------FSRGDSVYCKEDFFKRFGTKCAACQQGIPPTQVVRRAQDFVYHLHCF 90
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHE-GMDKSSNGENNNNNTNIN-NNLHNLNNEG 180
C+VC +QL GDE+ L ED L CK D+E + ++ T I L L N
Sbjct: 91 ACIVCKRQLATGDEYYLMEDSRLVCKTDYETAKQREADSTAKRPRTTITAKQLETLKNAY 150
Query: 181 SNSGK 185
+NS K
Sbjct: 151 NNSPK 155
>gi|157412000|gb|ABV54626.1| Lim homeobox protein 3 splice variant [Salmo salar]
Length = 379
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 84/185 (45%), Gaps = 34/185 (18%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ +C GC I D++IL+V D WH+ CL+C++C L + C
Sbjct: 9 IPVCAGCNQHIVDRFILKVL-DRHWHSKCLKCSDCQSQLADKC----------------- 50
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F R YCK D+ + FGTKC C V RA++ +YH+ CF
Sbjct: 51 -------------FSRGDSVYCKEDFFKRFGTKCAACQQGIPPTQVVRRAQDFVYHLHCF 97
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHE-GMDKSSNGENNNNNTNIN-NNLHNLNNEG 180
C+VC +QL GDE+ L ED L CK D+E + ++ T I L L N
Sbjct: 98 ACIVCKRQLATGDEYYLMEDSRLVCKADYETAKQREADSTAKRPRTTITAKQLETLKNAY 157
Query: 181 SNSGK 185
+NS K
Sbjct: 158 NNSPK 162
>gi|124377602|dbj|BAF46218.1| LIM homeobox gene 9 gamma protein [Glandirana rugosa]
Length = 331
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 72/145 (49%), Gaps = 30/145 (20%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 49 KPTLCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 83
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA+ +YH+
Sbjct: 84 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEIVMRARESVYHLS 139
Query: 122 CFCCVVCGKQLVPGDEFALREDGLF 146
CF C C K L GD F ++E+ ++
Sbjct: 140 CFTCTTCNKTLSTGDHFGMKENLVY 164
>gi|348535047|ref|XP_003455013.1| PREDICTED: LIM/homeobox protein Lhx3-like [Oreochromis niloticus]
Length = 400
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 85/187 (45%), Gaps = 34/187 (18%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+ + +C GC I D++IL+V D WH+ CL+C++C L + C
Sbjct: 23 QEIPMCAGCNQHIVDRFILKVL-DRHWHSKCLKCSDCQAQLADKC--------------- 66
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
F R YCK D+ + FGTKC C V RA++ +YH+
Sbjct: 67 ---------------FTRGDSVYCKDDFFKRFGTKCAACQQGIPPTQVVRRAQDFVYHLH 111
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHE-GMDKSSNGENNNNNTNIN-NNLHNLNN 178
CF C+VC +QL GDE+ L ED L CK D+E + ++ T I L L N
Sbjct: 112 CFACIVCKRQLATGDEYYLMEDSRLVCKADYETAKQREADSTAKRPRTTITAKQLETLKN 171
Query: 179 EGSNSGK 185
+NS K
Sbjct: 172 AYNNSPK 178
>gi|167859072|gb|ACA04471.1| Lhx2 [Strongylocentrotus purpuratus]
Length = 251
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 92/180 (51%), Gaps = 36/180 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GCGG+I D++ L +A D +WH CL+C EC
Sbjct: 49 AVCAGCGGRICDRFYL-LAADRQWHTQCLQCCEC-------------------------- 81
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTK-CEKCNLNFKREDFVMRAKNKIYHVQCF 123
N LD +CF ++G YCK DY++ +G K C +C++ + + VMRA+ +YH+ CF
Sbjct: 82 --NVQLDSELSCFAKEGNIYCKEDYLKRYGIKKCARCHVGIESHEMVMRARELVYHLACF 139
Query: 124 CCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGEN------NNNNTNINNNLHNLN 177
C VC +L GD + +RE+ ++C+ +E + S+ ++ + + LHNL+
Sbjct: 140 SCAVCNLELHTGDYYGMRENLVYCQLHYETLFVPSSDQSTYHHLHHASPPPPQPTLHNLS 199
>gi|211971017|ref|NP_001130018.1| LIM/homeobox protein Lhx3 [Salmo salar]
gi|157412002|gb|ABV54627.1| Lim homeobox protein 3 [Salmo salar]
Length = 395
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 85/187 (45%), Gaps = 34/187 (18%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+ + +C GC I D++IL+V D WH+ CL+C++C L + C
Sbjct: 23 QEIPVCAGCNQHIVDRFILKVL-DRHWHSKCLKCSDCQSQLADKC--------------- 66
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
F R YCK D+ + FGTKC C V RA++ +YH+
Sbjct: 67 ---------------FSRGDSVYCKEDFFKRFGTKCAACQQGIPPTQVVRRAQDFVYHLH 111
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHE-GMDKSSNGENNNNNTNIN-NNLHNLNN 178
CF C+VC +QL GDE+ L ED L CK D+E + ++ T I L L N
Sbjct: 112 CFACIVCKRQLATGDEYYLMEDSRLVCKADYETAKQREADSTAKRPRTTITAKQLETLKN 171
Query: 179 EGSNSGK 185
+NS K
Sbjct: 172 AYNNSPK 178
>gi|124377606|dbj|BAF46220.1| LIM homeobox gene 9 epsilon protein [Glandirana rugosa]
Length = 297
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 72/145 (49%), Gaps = 30/145 (20%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 49 KPTLCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 83
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA+ +YH+
Sbjct: 84 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEIVMRARESVYHLS 139
Query: 122 CFCCVVCGKQLVPGDEFALREDGLF 146
CF C C K L GD F ++E+ ++
Sbjct: 140 CFTCTXCNKTLSTGDHFGMKENLVY 164
>gi|124377604|dbj|BAF46219.1| LIM homeobox gene 9 delta protein [Glandirana rugosa]
Length = 312
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 72/145 (49%), Gaps = 30/145 (20%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 49 KPTLCAGCGGKISDRYYL-LAVDKQWHLRCLKCCEC------------------------ 83
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQ 121
L+ TCF +DG YCK DY R F +C +C+L + VMRA+ +YH+
Sbjct: 84 ----KLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEIVMRARESVYHLS 139
Query: 122 CFCCVVCGKQLVPGDEFALREDGLF 146
CF C C K L GD F ++E+ ++
Sbjct: 140 CFTCTXCNKTLSTGDHFGMKENLVY 164
>gi|328708276|ref|XP_001946004.2| PREDICTED: protein apterous-like [Acyrthosiphon pisum]
Length = 556
Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 77/150 (51%), Gaps = 30/150 (20%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
++LC GCG +I D+Y L A D WHA+CL+C++C
Sbjct: 182 VNLCDGCGLKILDRYYL-FAVDKRWHASCLQCSQC------------------------- 215
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTK-CEKCNLNFKREDFVMRAKNKIYHVQC 122
+ L CF RDG YCK DY RL+G + C +C+ + VMRA++ ++HV C
Sbjct: 216 ---TRTLASEIKCFYRDGNIYCKADYQRLYGIRRCGRCHAGISPSELVMRARDTVFHVPC 272
Query: 123 FCCVVCGKQLVPGDEFALREDGLFCKDDHE 152
F C VC L GD+F +R+ +FC+ ++
Sbjct: 273 FSCTVCLAVLTKGDQFGMRDGAVFCQHHYQ 302
>gi|193575711|ref|XP_001949543.1| PREDICTED: LIM/homeobox protein Lhx2-like [Acyrthosiphon pisum]
Length = 356
Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 72/147 (48%), Gaps = 30/147 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCG I D++ L A D+ WH CL+CAEC
Sbjct: 23 CAGCGRSIDDRFYLS-AVDMCWHIGCLQCAEC---------------------------- 53
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK-CEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
LD TC+ R G YCK+DY RLF K C +C D VMRAK+ +YHV+CF C
Sbjct: 54 KLPLDTELTCYSRHGNIYCKQDYYRLFSIKRCARCQGGIGACDLVMRAKDLVYHVECFAC 113
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHE 152
CG L GD + +R+ +FC+ D+E
Sbjct: 114 YACGAVLCKGDYYGVRDGAVFCRPDYE 140
>gi|115727487|ref|XP_782032.2| PREDICTED: LIM/homeobox protein Lhx9 [Strongylocentrotus
purpuratus]
Length = 474
Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 92/180 (51%), Gaps = 36/180 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GCGG+I D++ L +A D +WH CL+C EC
Sbjct: 52 AVCAGCGGRICDRFYL-LAADRQWHTQCLQCCEC-------------------------- 84
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTK-CEKCNLNFKREDFVMRAKNKIYHVQCF 123
N LD +CF ++G YCK DY++ +G K C +C++ + + VMRA+ +YH+ CF
Sbjct: 85 --NVQLDSELSCFAKEGNIYCKEDYLKRYGIKKCARCHVGIESHEMVMRARELVYHLACF 142
Query: 124 CCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGEN------NNNNTNINNNLHNLN 177
C VC +L GD + +RE+ ++C+ +E + S+ ++ + + LHNL+
Sbjct: 143 SCAVCNLELHTGDYYGMRENLVYCQLHYETLFVPSSDQSTYHHLHHASPPPPQPTLHNLS 202
>gi|118343872|ref|NP_001071755.1| LIM/homeobox protein Lhx3a type 1 [Ciona intestinalis]
gi|70570105|dbj|BAE06537.1| transcription factor protein [Ciona intestinalis]
Length = 596
Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats.
Identities = 52/151 (34%), Positives = 73/151 (48%), Gaps = 32/151 (21%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
++ C GC I D+YIL+V D WH+ CL+C +C + L + C
Sbjct: 191 KIPKCTGCDHHIFDRYILKVQ-DKPWHSQCLKCNDCGRQLTDKC---------------- 233
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQC 122
F R YCK D+ + FGTKC C L V RA++ +YH++C
Sbjct: 234 --------------FSRGSYVYCKEDFFKRFGTKCSGCELAIPPTQVVRRAQDNVYHLEC 279
Query: 123 FCCVVCGKQLVPGDEFALREDG-LFCKDDHE 152
F C +C +QL GD+F L +D L CK D+E
Sbjct: 280 FRCFMCSEQLGTGDQFYLLDDSRLVCKKDYE 310
>gi|190336903|gb|AAI62627.1| LIM homeobox 3 [Danio rerio]
Length = 398
Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 84/185 (45%), Gaps = 34/185 (18%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ +C GC I D++IL+V D WH+ CL+C++C L + C
Sbjct: 25 IPVCAGCNQHIVDRFILKVL-DRHWHSKCLKCSDCQSQLADKC----------------- 66
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F R YCK D+ + FGTKC C V RA++ +YH+ CF
Sbjct: 67 -------------FSRGDSVYCKDDFFKRFGTKCAACQQGIPPTQVVRRAQDFVYHLHCF 113
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHE-GMDKSSNGENNNNNTNIN-NNLHNLNNEG 180
C+VC +QL GDE+ L ED L CK D+E + ++ T I L L N
Sbjct: 114 ACIVCKRQLATGDEYYLMEDSRLVCKADYETAKQREADSTAKRPRTTITAKQLETLKNAY 173
Query: 181 SNSGK 185
+NS K
Sbjct: 174 NNSPK 178
>gi|18858975|ref|NP_571283.1| LIM/homeobox protein Lhx3 [Danio rerio]
gi|2497671|sp|Q90421.1|LHX3_DANRE RecName: Full=LIM/homeobox protein Lhx3; Short=LIM homeobox protein
3; AltName: Full=Homeobox protein LIM-3
gi|1000342|gb|AAA76714.1| LIM homeobox protein [Danio rerio]
Length = 398
Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 84/185 (45%), Gaps = 34/185 (18%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ +C GC I D++IL+V D WH+ CL+C++C L + C
Sbjct: 25 IPVCAGCNQHIVDRFILKVL-DRHWHSKCLKCSDCQSQLADKC----------------- 66
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F R YCK D+ + FGTKC C V RA++ +YH+ CF
Sbjct: 67 -------------FSRGDSVYCKDDFFKRFGTKCAACQQGIPPTQVVRRAQDFVYHLHCF 113
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHE-GMDKSSNGENNNNNTNIN-NNLHNLNNEG 180
C+VC +QL GDE+ L ED L CK D+E + ++ T I L L N
Sbjct: 114 ACIVCKRQLATGDEYYLMEDSRLVCKADYETAKQREADSTAKRPRTTITAKQLETLKNAY 173
Query: 181 SNSGK 185
+NS K
Sbjct: 174 NNSPK 178
>gi|339252326|ref|XP_003371386.1| LIM/homeobox protein Lhx1 [Trichinella spiralis]
gi|316968365|gb|EFV52646.1| LIM/homeobox protein Lhx1 [Trichinella spiralis]
Length = 309
Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 74/149 (49%), Gaps = 32/149 (21%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
++LC GC I+D+Y+ V D WH +C+ C C LD+ C
Sbjct: 9 MTLCAGCKKPIYDRYLYHVM-DKSWHGSCIVCEVCQTPLDDRC----------------- 50
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F RDG +CK D+++ +G KC +C+ NF R D V A+NK +H+ CF
Sbjct: 51 -------------FTRDGLIFCKTDFLKRYGAKCSRCSQNFSRGDLVRYARNKAFHIDCF 97
Query: 124 CCVVCGKQLVPGDEFALREDGLF-CKDDH 151
CC +C K+L GD+ + D F CK D+
Sbjct: 98 CCTICQKRLNTGDQLYIINDSTFVCKTDY 126
>gi|312385468|gb|EFR29960.1| hypothetical protein AND_00755 [Anopheles darlingi]
Length = 339
Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 78/159 (49%), Gaps = 34/159 (21%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC QI D+YI V WH +CLRC+ C YC
Sbjct: 74 CGGCSEQITDRYIFEVN-GASWHGSCLRCSVC-----------------YCP-------- 107
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
L+ +CF+RDG YCK DY++ F T C KC + D+V RA+ ++H+ CF C
Sbjct: 108 ---LERQASCFLRDGDVYCKADYIKKFKTSCAKCARSISATDWVRRAREYVFHLACFACD 164
Query: 127 VCGKQLVPGDEFALREDGLFCKDDH-----EGMDKSSNG 160
CG+QL G++FA+ ED + CK + +G S +G
Sbjct: 165 SCGRQLSTGEQFAICEDRVLCKTHYMELIDDGTTSSEDG 203
>gi|158299816|ref|XP_319836.3| AGAP009088-PA [Anopheles gambiae str. PEST]
gi|157013700|gb|EAA14726.3| AGAP009088-PA [Anopheles gambiae str. PEST]
Length = 389
Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 87/170 (51%), Gaps = 40/170 (23%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ C GC I D++IL+V+ D WHA CL+C+EC L+E CF R+G+ +CK D+
Sbjct: 38 IPKCGGCHELILDRFILKVS-DRTWHAKCLQCSECRVQLNEK--CFARNGQLFCKDDF-- 92
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F R +GTKC C+L V RA++ +YH+QCF
Sbjct: 93 -------------FKR-------------YGTKCAACDLGIPPTQVVRRAQDNVYHLQCF 126
Query: 124 CCVVCGKQLVPGDEFALRED-GLFCKDDHEGM--------DKSSNGENNN 164
C +C +QL GDEF L ED L CK D+E D S +GE++N
Sbjct: 127 MCSMCSRQLNTGDEFYLMEDCKLICKPDYEAAKAKGLYLSDGSLDGESSN 176
>gi|340711972|ref|XP_003394539.1| PREDICTED: LIM homeobox transcription factor 1-beta-like [Bombus
terrestris]
Length = 402
Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 75/148 (50%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GCG I D+Y+++VA +H CL CA C L
Sbjct: 56 TICAGCGRTIVDKYVMQVA-GRNYHEECLSCAACATPLTH-------------------- 94
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+CF+R+ K YC+ DY R+FG KC +C DFV+RA ++HV+CF
Sbjct: 95 ----------SCFIRELKLYCRNDYERIFGVKCARCMEKISCSDFVLRAPGLVFHVECFA 144
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C +CG+ L+PG ++ LR+ C+ D+E
Sbjct: 145 CCMCGQPLLPGTQYFLRQGQPICRRDYE 172
Score = 42.7 bits (99), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Query: 18 YILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV------SSEKNQFLD 71
++LR AP L +H C C C Q L F+R G+ C+RDY S + + LD
Sbjct: 129 FVLR-APGLVFHVECFACCMCGQPLLPGTQYFLRQGQPICRRDYEHELYLNSPQDDDLLD 187
Query: 72 ENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFK 105
EN RDG+ KR L + + F+
Sbjct: 188 ENRP---RDGRRGPKRPRTILTSAQRRQFKAAFE 218
>gi|440898169|gb|ELR49722.1| LIM homeobox transcription factor 1-beta [Bos grunniens mutus]
Length = 392
Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 85/179 (47%), Gaps = 36/179 (20%)
Query: 10 CGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQF 69
C I D++++RV + WH CL+CA C Q L
Sbjct: 49 CERPISDRFLMRVN-ESSWHEECLQCAACQQAL--------------------------- 80
Query: 70 LDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCG 129
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFCC VC
Sbjct: 81 ---TTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCE 137
Query: 130 KQLVPGDEFALREDGLFCKDDHEG----MDKSSNGENNN-NNTNINNNLHNLNNEGSNS 183
+QL GDEF L+E L CK D+E + S E+++ + + + ++ +GS S
Sbjct: 138 RQLRKGDEFVLKEGQLLCKGDYEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQS 196
>gi|312374311|gb|EFR21889.1| hypothetical protein AND_16082 [Anopheles darlingi]
Length = 568
Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 62/167 (37%), Positives = 86/167 (51%), Gaps = 40/167 (23%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D++IL+V+ D WHA CL+C+EC L+E CF R+G+ +CK D+
Sbjct: 175 CGGCHELILDRFILKVS-DRTWHAKCLQCSECRVQLNEK--CFARNGQLFCKDDF----- 226
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R +GTKC C+L V RA++ +YH+QCF C
Sbjct: 227 ----------FKR-------------YGTKCAACDLGIPPTQVVRRAQDNVYHLQCFMCS 263
Query: 127 VCGKQLVPGDEFALRED-GLFCKDDHEGM--------DKSSNGENNN 164
+C +QL GDE+ L ED L CK D+E D S +GE++N
Sbjct: 264 MCSRQLNTGDEYYLMEDCKLICKPDYEAAKAKGLYLSDGSLDGESSN 310
>gi|56185681|gb|AAV84105.1| apterous [Euprymna scolopes]
Length = 423
Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 76/148 (51%), Gaps = 30/148 (20%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C GCG I ++Y L VA + WH CL+C EC LD +E
Sbjct: 91 ICAGCGDLITERYYLNVANN-AWHFNCLKCYECKSTLD--------------------TE 129
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+ +C+ R G YC+ DY RLF T +C +CN+ + D VMRA+N +YH+ CF
Sbjct: 130 R--------SCYERMGNYYCRDDYQRLFSTQRCARCNMGIQSTDLVMRARNHVYHLTCFT 181
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C C K L GD F LRE ++C+ +E
Sbjct: 182 CFTCNKALQAGDTFGLREHLVYCQVHYE 209
>gi|431916082|gb|ELK16336.1| LIM homeobox transcription factor 1-alpha [Pteropus alecto]
Length = 374
Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 75/149 (50%), Gaps = 31/149 (20%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
L +C GC I D+++LR+ D WH C++CA C + L+
Sbjct: 24 LLVCEGCQRVISDRFLLRLN-DSFWHEECVQCASCKEPLE-------------------- 62
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
TCF RD K YCK DY +LF KC C +FVMRA+ +YH+ CF
Sbjct: 63 ----------TTCFYRDKKLYCKCDYEKLFAVKCGGCFEAIAPNEFVMRAQKTVYHLGCF 112
Query: 124 CCVVCGKQLVPGDEFALREDGLFCKDDHE 152
CC VC +QL GDEF L++ L C+ D+E
Sbjct: 113 CCCVCERQLQKGDEFVLKDGQLLCRGDYE 141
>gi|321464128|gb|EFX75138.1| hypothetical protein DAPPUDRAFT_323670 [Daphnia pulex]
Length = 278
Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 81/182 (44%), Gaps = 38/182 (20%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ C GC G I D++IL+V D WH CL+C +C L + CFVR G TY
Sbjct: 38 IPRCAGCSGFILDRFILKVL-DRPWHTECLKCMDCGTHLVDK--CFVRGGSTY------- 87
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
CK D+ R FGTKC C+ V RA++ +YH++CF
Sbjct: 88 ---------------------CKEDFFRRFGTKCACCDQGIAPSQIVRRAQHHVYHLECF 126
Query: 124 CCVVCGKQLVPGDEFALRED-GLFCKDDHEGMDKSSN------GENNNNNTNINNNLHNL 176
CV+CG+QL GDEF L ED L CK D+E + GEN L
Sbjct: 127 QCVLCGRQLDTGDEFYLMEDRKLVCKADYESAKTKGSHFLELEGENPPKRPRTTITAKQL 186
Query: 177 NN 178
Sbjct: 187 ET 188
>gi|344254045|gb|EGW10149.1| LIM/homeobox protein Lhx4 [Cricetulus griseus]
Length = 397
Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 76/151 (50%), Gaps = 34/151 (22%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECH-QFLDENCTCFVRDGKTYCKRDYV 62
+ C GC I D++IL+V D WH++CL+CA+C Q +D CF R G Y
Sbjct: 7 IPQCAGCNQHILDKFILKVL-DRHWHSSCLKCADCQMQLVDR---CFSRAGSVY------ 56
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQC 122
CK D+ + FGTKC C V +A++ +YH+ C
Sbjct: 57 ----------------------CKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHC 94
Query: 123 FCCVVCGKQLVPGDEFALREDG-LFCKDDHE 152
F C++C +QL GDEF L EDG L CK+D+E
Sbjct: 95 FACIICNRQLATGDEFYLMEDGRLVCKEDYE 125
>gi|383861320|ref|XP_003706134.1| PREDICTED: LIM homeobox transcription factor 1-beta-like [Megachile
rotundata]
Length = 402
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 74/148 (50%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GCG I D+Y+++VA +H CL CA C L +
Sbjct: 56 TICAGCGRTISDKYVMQVA-GRNYHEECLSCAACAAPLTQ-------------------- 94
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+CF+R+ K YC+ DY R+FG KC +C DFV+R ++HV+CF
Sbjct: 95 ----------SCFIRELKFYCRTDYERIFGVKCARCMEKISCSDFVLRTPGLVFHVECFA 144
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C +CG+ L PG ++ LR+ C+ D+E
Sbjct: 145 CCMCGQPLPPGTQYFLRQGQPICRRDYE 172
Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Query: 18 YILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV------SSEKNQFLD 71
++LR P L +H C C C Q L F+R G+ C+RDY S + + LD
Sbjct: 129 FVLRT-PGLVFHVECFACCMCGQPLPPGTQYFLRQGQPICRRDYEHELYLNSPQDDDLLD 187
Query: 72 ENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFK 105
EN RDG+ KR L + + +F+
Sbjct: 188 EN---RPRDGRRGPKRPRTILTSAQRRQFKASFE 218
>gi|156390719|ref|XP_001635417.1| predicted protein [Nematostella vectensis]
gi|156222511|gb|EDO43354.1| predicted protein [Nematostella vectensis]
Length = 253
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 87/168 (51%), Gaps = 34/168 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GCG +I +++ L +A D EWHA CL+C++C +R
Sbjct: 7 AVCAGCGSRILERFYL-MAVDQEWHADCLKCSDCE----------LR------------- 42
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTK-CEKCNLNFKREDFVMRAKNKIYHVQCF 123
LD TCF +DG C+ DY R F K C C+ ++ VMRA++++YHV CF
Sbjct: 43 -----LDNELTCFSKDGVILCREDYYRRFSVKKCSSCSQAISSKELVMRARDQVYHVNCF 97
Query: 124 CCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNNTNINN 171
C C + L G+ F +R ++CK+D+E + + E + N T IN+
Sbjct: 98 ACDRCKRMLATGEYFGMRGIRIYCKEDYEELLR----EESRNPTKINS 141
>gi|383850874|ref|XP_003700999.1| PREDICTED: LIM/homeobox protein Lhx9-like [Megachile rotundata]
Length = 391
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 70/147 (47%), Gaps = 30/147 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCG +I +++ LR A D WH CLRC C C V
Sbjct: 38 CGGCGREIAERWYLRAA-DRAWHCGCLRC----------CHCRVP--------------- 71
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFG-TKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L TCF RDG YCK DY RLF ++C +C + VMRA++ +YHV CF C
Sbjct: 72 ---LAAELTCFARDGNIYCKEDYYRLFAVSRCSRCRAGISASELVMRARDLVYHVACFTC 128
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHE 152
CG L GD F R+ ++C+ +E
Sbjct: 129 ASCGTPLNKGDHFGQRDGLVYCRPHYE 155
>gi|390345093|ref|XP_787486.3| PREDICTED: LIM domain transcription factor LMO4-B-like
[Strongylocentrotus purpuratus]
Length = 208
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 77/154 (50%), Gaps = 30/154 (19%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCGG+I D+++L A D WH CL+C+ C+
Sbjct: 59 CAGCGGKIIDRFLLH-AVDRFWHTGCLKCSCCNV-------------------------- 91
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFC 124
Q D +CF + G CK+DY+R+FGT C C + VMR +N++YH++CF
Sbjct: 92 -QLGDIGHSCFSKGGMILCKKDYLRIFGTSGACTACGQQIPANELVMRTQNRVYHLKCFA 150
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSS 158
C C QLVPGD + + + C++DH + KS+
Sbjct: 151 CSSCHIQLVPGDRYTVVNGSIVCENDHSKLYKSA 184
>gi|47177844|emb|CAG14401.1| unnamed protein product [Tetraodon nigroviridis]
Length = 63
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/62 (64%), Positives = 53/62 (85%)
Query: 91 RLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDD 150
RL+G KC KCN+ F + DFVMRA++K+YH++CF CV C +QL+PGDEFALR+DGLFC+ D
Sbjct: 1 RLYGIKCAKCNIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALRDDGLFCRAD 60
Query: 151 HE 152
H+
Sbjct: 61 HD 62
>gi|171544941|ref|NP_001116387.1| LIM/homeobox protein Lhx3 [Oryzias latipes]
gi|157410515|gb|ABV53980.1| LIM/homeobox protein Lhx3 [Oryzias latipes]
Length = 401
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 86/190 (45%), Gaps = 33/190 (17%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ +C GC I D++IL+V D WH CL+C++C L E CF R YCK D+
Sbjct: 27 IPVCAGCNQHIVDRFILKVL-DRHWHGKCLKCSDCQAQLAEK--CFSRGDSVYCKDDF-- 81
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
+ R FGTKC C V RA++ +YH+ CF
Sbjct: 82 -------------------------FKRRFGTKCAACQQGIPPTQVVRRAQDFVYHLHCF 116
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHE-GMDKSSNGENNNNNTNIN-NNLHNLNNEG 180
C+VC +QL GDE+ L ED L CK D+E + ++ T I L L N
Sbjct: 117 ACIVCKRQLATGDEYYLMEDSRLVCKTDYETAKQREADSTAKRPRTTITAKQLETLKNAY 176
Query: 181 SNSGKIQLYL 190
+NS K ++
Sbjct: 177 NNSPKPARHV 186
>gi|195425678|ref|XP_002061119.1| apterous [Drosophila willistoni]
gi|27374312|gb|AAO01060.1| ap-PA [Drosophila willistoni]
gi|194157204|gb|EDW72105.1| apterous [Drosophila willistoni]
Length = 469
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 72/148 (48%), Gaps = 30/148 (20%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
R L C GCG QI D++ L + WHA+CL+C C
Sbjct: 144 RSLDDCAGCGRQIQDRFYLSAV-EKRWHASCLQCYAC----------------------- 179
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTK-CEKCNLNFKREDFVMRAKNKIYHV 120
Q L+ +C+ RDG YCK DY FGT+ C +C + + VMRA+N ++HV
Sbjct: 180 -----RQPLERESSCYSRDGNIYCKNDYYSFFGTRRCSRCLASISSNELVMRARNLVFHV 234
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCK 148
CFCC VC L GD++ + + ++C+
Sbjct: 235 NCFCCTVCHTPLTKGDQYGIIDALIYCR 262
>gi|321455236|gb|EFX66374.1| hypothetical protein DAPPUDRAFT_11288 [Daphnia pulex]
Length = 349
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 72/145 (49%), Gaps = 32/145 (22%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WHA C+RCA+C L E C
Sbjct: 1 CAGCDRAILDKFLLTVL-DRTWHAECVRCADCRNILAERC-------------------- 39
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F RDGK YC+ D+ R +GTKC C D V +A++K+YH++CF C
Sbjct: 40 ----------FSRDGKLYCRTDFFRRYGTKCGGCGQGLSPTDLVRKARDKVYHLRCFTCA 89
Query: 127 VCGKQLVPGDEFALREDGLF-CKDD 150
+C +QL G+E L +D F CK+D
Sbjct: 90 LCRRQLSTGEELYLLDDARFLCKED 114
>gi|158296015|ref|XP_316574.4| AGAP006536-PA [Anopheles gambiae str. PEST]
gi|157016309|gb|EAA11386.5| AGAP006536-PA [Anopheles gambiae str. PEST]
Length = 291
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 82/163 (50%), Gaps = 31/163 (19%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
L +C CG I D+Y+ + WH +CLRC+ C L+ +C+ R
Sbjct: 33 LRICTACGEPIADKYLFDID-GCAWHGSCLRCSVCLTLLERQPSCYFR------------ 79
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
D + YC+ DY+++FG KC KC D+V +A++ ++H+ CF
Sbjct: 80 ----------------DRQVYCRTDYIKMFGAKCSKCCRTIAASDWVRKARDLVFHLACF 123
Query: 124 CCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C CG+QL G++FAL +D + CK + MD +G N++++
Sbjct: 124 SCDTCGRQLSTGEQFALIDDKVMCKIHY--MDTVEDGSNSSDD 164
>gi|350402518|ref|XP_003486514.1| PREDICTED: LIM homeobox transcription factor 1-beta-like [Bombus
impatiens]
Length = 402
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 75/148 (50%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GCG I D+Y+++V+ +H CL CA C L
Sbjct: 56 TICAGCGRTIVDKYVMQVS-GRNYHEECLSCAACATPLTH-------------------- 94
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+CF+R+ K YC+ DY R+FG KC +C DFV+RA ++HV+CF
Sbjct: 95 ----------SCFIRELKLYCRNDYERIFGVKCARCMEKISCSDFVLRAPGLVFHVECFA 144
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C +CG+ L+PG ++ LR+ C+ D+E
Sbjct: 145 CCMCGQPLLPGTQYFLRQGQPICRRDYE 172
Score = 43.1 bits (100), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Query: 18 YILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV------SSEKNQFLD 71
++LR AP L +H C C C Q L F+R G+ C+RDY S + + LD
Sbjct: 129 FVLR-APGLVFHVECFACCMCGQPLLPGTQYFLRQGQPICRRDYEHELYLNSPQDDDLLD 187
Query: 72 ENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFK 105
EN RDG+ KR L + + F+
Sbjct: 188 ENRP---RDGRRGPKRPRTILTSAQRRQFKAAFE 218
>gi|301608740|ref|XP_002933954.1| PREDICTED: LIM homeobox transcription factor 1-beta-like [Xenopus
(Silurana) tropicalis]
Length = 533
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 72/147 (48%), Gaps = 31/147 (21%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C GCG I D+++LRV D WH C++CA C Q L
Sbjct: 185 VCAGCGNTISDRFLLRVN-DRSWHECCVKCAACLQIL----------------------- 220
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
+ TC+ R+ + YCK DY +LF TKC C + +MR + +YHV CF C
Sbjct: 221 -------SGTCYYRNRQLYCKEDYDKLFATKCNSCLKTVLPSELIMRVLSNVYHVACFFC 273
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHE 152
C ++L GDEF L+E L C+ D+E
Sbjct: 274 CECERRLERGDEFVLKEGQLLCRSDYE 300
>gi|443704461|gb|ELU01523.1| hypothetical protein CAPTEDRAFT_46615, partial [Capitella teleta]
Length = 122
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 72/146 (49%), Gaps = 30/146 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCGG+I D+++L A D WH CL+C+ C L E T
Sbjct: 3 CAGCGGKIIDRFLLH-AMDRYWHTGCLKCSCCQAQLGELGT------------------- 42
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+CF + G CKRDY+RLFG+ C C+ +FVM+A+ +YHV CF
Sbjct: 43 --------SCFTKSGMILCKRDYIRLFGSTGTCAACSQAIPASEFVMKAQGNVYHVHCFT 94
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDD 150
CV C +LVPGD + + L C+ D
Sbjct: 95 CVTCHSRLVPGDRYGIINGSLICEHD 120
>gi|443694945|gb|ELT95963.1| hypothetical protein CAPTEDRAFT_167213 [Capitella teleta]
Length = 352
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 72/148 (48%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
SLC GCG I D+Y+LRV + WH CL+C C L
Sbjct: 13 SLCCGCGLTIEDRYLLRVMGN-SWHERCLQCDFCRAPLTR-------------------- 51
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+CFV++G+ CK DY RL+ +C C + VMRA ++H+QCF
Sbjct: 52 ----------SCFVKNGRLLCKLDYDRLYAARCSACVQTVPSNELVMRAVGHVFHLQCFV 101
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
CV CG QL GD+F +++ LFC+ D E
Sbjct: 102 CVACGHQLQRGDQFVVKDGQLFCRADFE 129
>gi|194758260|ref|XP_001961380.1| GF13843 [Drosophila ananassae]
gi|190622678|gb|EDV38202.1| GF13843 [Drosophila ananassae]
Length = 469
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 72/148 (48%), Gaps = 30/148 (20%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
R L C GCG QI D++ L + WHA+CL+C C
Sbjct: 143 RNLDECAGCGRQIQDRFYLSAV-EKRWHASCLQCYAC----------------------- 178
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTK-CEKCNLNFKREDFVMRAKNKIYHV 120
Q L+ +C+ RDG YCK DY FGT+ C +C + + VMRA+N ++HV
Sbjct: 179 -----RQPLERESSCYSRDGNIYCKNDYYSFFGTRRCSRCLASISSNELVMRARNLVFHV 233
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCK 148
CFCC VC L GD++ + + ++C+
Sbjct: 234 NCFCCTVCHTPLTKGDQYGIIDALIYCR 261
>gi|125810912|ref|XP_001361667.1| ap [Drosophila pseudoobscura pseudoobscura]
gi|195154388|ref|XP_002018104.1| GL16944 [Drosophila persimilis]
gi|27374288|gb|AAO01041.1| ap-PA [Drosophila pseudoobscura]
gi|54636843|gb|EAL26246.1| ap [Drosophila pseudoobscura pseudoobscura]
gi|194113900|gb|EDW35943.1| GL16944 [Drosophila persimilis]
Length = 469
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 72/148 (48%), Gaps = 30/148 (20%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
R L C GCG QI D++ L + WHA+CL+C C
Sbjct: 143 RNLDDCAGCGRQIQDRFYLSAV-EKRWHASCLQCYAC----------------------- 178
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTK-CEKCNLNFKREDFVMRAKNKIYHV 120
Q L+ +C+ RDG YCK DY FGT+ C +C + + VMRA+N ++HV
Sbjct: 179 -----RQPLERESSCYSRDGNIYCKNDYYSFFGTRRCSRCLASISSNELVMRARNLVFHV 233
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCK 148
CFCC VC L GD++ + + ++C+
Sbjct: 234 NCFCCTVCHTPLTKGDQYGIIDALIYCR 261
>gi|301609265|ref|XP_002934210.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Xenopus
(Silurana) tropicalis]
Length = 380
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 73/147 (49%), Gaps = 31/147 (21%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C GC I D+++LR++ L WH C +C C + L+
Sbjct: 34 VCEGCERVICDRFLLRISDSL-WHEQCAQCCTCKEPLES--------------------- 71
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
+CF RD K YC+ DY +LF KC C +FVMRA+ +YH+ CFCC
Sbjct: 72 ---------SCFYRDKKLYCRNDYEKLFAVKCGTCLDTITPSEFVMRAQKNVYHLGCFCC 122
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHE 152
VC +QL GDEF L++ L CK D+E
Sbjct: 123 CVCDRQLQKGDEFVLKDGQLLCKSDYE 149
>gi|324511990|gb|ADY44978.1| Protein lin-11 [Ascaris suum]
Length = 368
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 78/149 (52%), Gaps = 32/149 (21%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+++C GC I D+Y+ V D WHA+C++CA+C + L E
Sbjct: 1 MAICGGCNTAILDRYVFHVL-DKTWHASCIQCADCKEPLTE------------------- 40
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
TCF RDG C++D+ R FGT+C CN+ R D V RA++K++HVQCF
Sbjct: 41 -----------TCFSRDGLILCRQDFSRRFGTRCAGCNVALDRNDLVRRARDKVFHVQCF 89
Query: 124 CCVVCGKQLVPGDE-FALREDGLFCKDDH 151
C VC K+L G++ + L + CK D+
Sbjct: 90 QCTVCQKKLDTGEQLYILNGNRFVCKHDY 118
>gi|357611533|gb|EHJ67530.1| lim homeobox protein [Danaus plexippus]
Length = 481
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 80/190 (42%), Gaps = 39/190 (20%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ C GC I D+Y+L+V+ D WHA CLRC EC L C
Sbjct: 133 IPKCGGCHEMIVDRYVLKVS-DRTWHAGCLRCVECRAMLSGKC----------------- 174
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F R+ + YC D+ + +GTKC C V RA+ +YH++CF
Sbjct: 175 -------------FARNNQLYCTEDFFKRYGTKCAGCGQGIPPTQVVRRAQAHVYHLRCF 221
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHEGMDKSSNGENNNN-------NTNINNNLHN 175
C C + L GDEF L EDG L CK D+E G + + T L
Sbjct: 222 ACAACARTLNTGDEFYLMEDGKLVCKPDYEAARAKGEGSLDGDAASKRPRTTITAKQLET 281
Query: 176 LNNEGSNSGK 185
L + S+S K
Sbjct: 282 LKSAYSSSPK 291
Score = 36.6 bits (83), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCF-VRDGKTYCKR 59
KR + C GCG I ++R A +H C CA C + L+ + + DGK CK
Sbjct: 189 KRYGTKCAGCGQGIPPTQVVRRAQAHVYHLRCFACAACARTLNTGDEFYLMEDGKLVCKP 248
Query: 60 DYVSS 64
DY ++
Sbjct: 249 DYEAA 253
>gi|62859451|ref|NP_001015899.1| LIM homeobox 8 [Xenopus (Silurana) tropicalis]
gi|89268071|emb|CAJ83129.1| LIM homeobox 7/8 [Xenopus (Silurana) tropicalis]
gi|110645724|gb|AAI18740.1| LIM homeobox 8 [Xenopus (Silurana) tropicalis]
Length = 374
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 82/170 (48%), Gaps = 30/170 (17%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S+C CG +I D+Y+L+V DL WH CL C+ C
Sbjct: 91 SVCSNCGLEIVDKYLLKVN-DLCWHVRCLSCSVC-------------------------- 123
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
L + +C+++D YCK DY R +GT+C +C + D+V RAK +YH+ CF
Sbjct: 124 --RTSLGRHTSCYIKDKDIYCKLDYFRRYGTRCSRCGRHIHATDWVRRAKGNVYHLACFA 181
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEGM-DKSSNGENNNNNTNINNNL 173
C C +QL G+EFAL E+ + C+ ++ M D N N ++ L
Sbjct: 182 CYSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNLKRAVENGNRVSVEGAL 231
>gi|339961229|pdb|3MMK|A Chain A, The Structural Basis For Partial Redundancy In A Class Of
Transcription Factors, The Lim-Homeodomain Proteins, In
Neural Cell Type Specification
gi|339961230|pdb|3MMK|B Chain B, The Structural Basis For Partial Redundancy In A Class Of
Transcription Factors, The Lim-Homeodomain Proteins, In
Neural Cell Type Specification
Length = 169
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 77/152 (50%), Gaps = 32/152 (21%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+++ C GC I D++IL+V D WH++CL+CA+C L + CF R G Y
Sbjct: 4 QQIPQCAGCNQHILDKFILKVL-DRHWHSSCLKCADCQMQLADR--CFSRAGSVY----- 55
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
CK D+ + FGTKC C V +A++ +YH+
Sbjct: 56 -----------------------CKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLH 92
Query: 122 CFCCVVCGKQLVPGDEFALREDG-LFCKDDHE 152
CF C++C +QL GDEF L EDG L CK+D+E
Sbjct: 93 CFACIICNRQLATGDEFYLMEDGRLVCKEDYE 124
>gi|397473228|ref|XP_003808119.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Pan paniscus]
gi|426362990|ref|XP_004048631.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Gorilla gorilla
gorilla]
gi|21753589|dbj|BAC04371.1| unnamed protein product [Homo sapiens]
gi|119607983|gb|EAW87577.1| LIM homeobox 2, isoform CRA_b [Homo sapiens]
Length = 397
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 75/161 (46%), Gaps = 38/161 (23%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 32 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 66
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYV---------RLFGTKCEKCNLNFKREDFVMRA 113
L+ TCF +DG YCK DY R +C +C+L + VMRA
Sbjct: 67 ----KLNLESELTCFSKDGSIYCKEDYYSPSLHGPYRRFSVQRCARCHLGISASEMVMRA 122
Query: 114 KNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
++ +YH+ CF C C K L GD F +++ ++C+ E +
Sbjct: 123 RDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEAL 163
>gi|403299864|ref|XP_003940694.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Saimiri boliviensis
boliviensis]
Length = 397
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 75/161 (46%), Gaps = 38/161 (23%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 32 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 66
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYV---------RLFGTKCEKCNLNFKREDFVMRA 113
L+ TCF +DG YCK DY R +C +C+L + VMRA
Sbjct: 67 ----KLNLESELTCFSKDGSIYCKEDYYSPSLHGPYRRFSVQRCARCHLGISASEMVMRA 122
Query: 114 KNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
++ +YH+ CF C C K L GD F +++ ++C+ E +
Sbjct: 123 RDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEAL 163
>gi|345806104|ref|XP_548461.3| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Canis lupus
familiaris]
Length = 397
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 75/161 (46%), Gaps = 38/161 (23%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 32 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 66
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYV---------RLFGTKCEKCNLNFKREDFVMRA 113
L+ TCF +DG YCK DY R +C +C+L + VMRA
Sbjct: 67 ----KLNLESELTCFSKDGSIYCKEDYYSPSLNGPYRRFSVQRCARCHLGISASEMVMRA 122
Query: 114 KNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
++ +YH+ CF C C K L GD F +++ ++C+ E +
Sbjct: 123 RDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEAL 163
>gi|395824163|ref|XP_003785340.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Otolemur garnettii]
Length = 414
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 75/161 (46%), Gaps = 38/161 (23%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 49 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 83
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYV---------RLFGTKCEKCNLNFKREDFVMRA 113
L+ TCF +DG YCK DY R +C +C+L + VMRA
Sbjct: 84 ----KLNLESELTCFSKDGSIYCKEDYYSPSLHGLYRRFSVQRCARCHLGISASEMVMRA 139
Query: 114 KNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
++ +YH+ CF C C K L GD F +++ ++C+ E +
Sbjct: 140 RDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEAL 180
>gi|195475694|ref|XP_002090119.1| GE19443 [Drosophila yakuba]
gi|194176220|gb|EDW89831.1| GE19443 [Drosophila yakuba]
Length = 469
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 73/152 (48%), Gaps = 30/152 (19%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
R L C GCG QI D++ L + WHA+CL+C C
Sbjct: 143 RSLDDCSGCGRQIQDRFYLSAV-EKRWHASCLQCYAC----------------------- 178
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTK-CEKCNLNFKREDFVMRAKNKIYHV 120
Q L+ +C+ RDG YCK DY FGT+ C +C + + VMRA+N ++HV
Sbjct: 179 -----RQPLERESSCYSRDGNIYCKNDYYSFFGTRRCSRCLASISSNELVMRARNLVFHV 233
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHE 152
CFCC VC L GD++ + + ++C+ +
Sbjct: 234 NCFCCTVCHTPLTKGDQYGIIDALIYCRSHYS 265
>gi|332229977|ref|XP_003264162.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Nomascus
leucogenys]
Length = 414
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 75/161 (46%), Gaps = 38/161 (23%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 49 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 83
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYV---------RLFGTKCEKCNLNFKREDFVMRA 113
L+ TCF +DG YCK DY R +C +C+L + VMRA
Sbjct: 84 ----KLNLESELTCFSKDGSIYCKEDYYSPSLHGPYRRFSVQRCARCHLGISASEMVMRA 139
Query: 114 KNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
++ +YH+ CF C C K L GD F +++ ++C+ E +
Sbjct: 140 RDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEAL 180
>gi|345487079|ref|XP_001599685.2| PREDICTED: LIM/homeobox protein Lhx9-like [Nasonia vitripennis]
Length = 406
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 70/147 (47%), Gaps = 30/147 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCG +I +++ LR A D WH CLRC CH L
Sbjct: 46 CGGCGREIAERWYLRAA-DRPWHCGCLRC--CHCRLP----------------------- 79
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFG-TKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L TCF RDG YCK DY RLF ++C +C + VMRA++ +YHV CF C
Sbjct: 80 ---LAAELTCFARDGNIYCKEDYYRLFAVSRCSRCRAGISATELVMRARDLVYHVACFTC 136
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHE 152
CG L GD F R+ ++C+ +E
Sbjct: 137 ASCGTPLNKGDHFGQRDGLVYCRPHYE 163
>gi|28316900|gb|AAO39472.1| RE70568p [Drosophila melanogaster]
Length = 523
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 91/193 (47%), Gaps = 39/193 (20%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ C GC I D++IL+V + WHA CL+C+ECH L N CF R+G+ +CK D+
Sbjct: 119 IPKCGGCHELILDRFILKVL-ERTWHAKCLQCSECHGQL--NDKCFARNGQLFCKEDFFK 175
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
S R +GTKC C++ V RA++ +YH+QCF
Sbjct: 176 SN-------------------------RRYGTKCSACDMGIPPTQVVRRAQDNVYHLQCF 210
Query: 124 CCVVCGKQLVPGDEFALRED-GLFCKDDHEG-------MDKSSNGENNNN---NTNINNN 172
C +C + L GDEF L ED L CK D+E +D S +G+ N T
Sbjct: 211 LCAMCSRTLNTGDEFYLMEDRKLICKRDYEEAKAKGLYLDGSLDGDQPNKRPRTTITAKQ 270
Query: 173 LHNLNNEGSNSGK 185
L L +NS K
Sbjct: 271 LETLKTAYNNSPK 283
>gi|148232304|ref|NP_001081623.1| LIM/homeobox protein Lhx3 [Xenopus laevis]
gi|547856|sp|P36200.1|LHX3_XENLA RecName: Full=LIM/homeobox protein Lhx3; Short=LIM homeobox protein
3; AltName: Full=Homeobox protein LIM-3; Short=xLIM-3
gi|407072|emb|CAA80402.1| Xlim-3 [Xenopus laevis]
gi|213623314|gb|AAI69580.1| Xlim-3 protein [Xenopus laevis]
Length = 395
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 80/185 (43%), Gaps = 34/185 (18%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ C GC I D++IL+V D WH+ CL+C +C L E C
Sbjct: 25 IPQCAGCNQHIVDRFILKVL-DRHWHSKCLKCNDCQIQLAEKC----------------- 66
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F R YCK D+ + FGTKC C V RA+ +YH+ CF
Sbjct: 67 -------------FSRGDSVYCKDDFFKRFGTKCAACQQGIPPTQVVRRAQEFVYHLHCF 113
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHEGMDK--SSNGENNNNNTNINNNLHNLNNEG 180
C+VC +QL GDEF L ED L CK D+E + + + T L L N
Sbjct: 114 ACIVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAESTAKRPRTTITAKQLETLKNAY 173
Query: 181 SNSGK 185
+NS K
Sbjct: 174 NNSPK 178
>gi|402896426|ref|XP_003911301.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Papio anubis]
Length = 414
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 75/161 (46%), Gaps = 38/161 (23%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 49 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 83
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYV---------RLFGTKCEKCNLNFKREDFVMRA 113
L+ TCF +DG YCK DY R +C +C+L + VMRA
Sbjct: 84 ----KLNLESELTCFSKDGSIYCKEDYYSPSLHGPYRRFSVQRCARCHLGISASEMVMRA 139
Query: 114 KNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
++ +YH+ CF C C K L GD F +++ ++C+ E +
Sbjct: 140 RDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEAL 180
>gi|440908262|gb|ELR58305.1| LIM/homeobox protein Lhx2, partial [Bos grunniens mutus]
Length = 410
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 75/161 (46%), Gaps = 38/161 (23%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 46 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 80
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYV---------RLFGTKCEKCNLNFKREDFVMRA 113
L+ TCF +DG YCK DY R +C +C+L + VMRA
Sbjct: 81 ----KLNLESELTCFSKDGSIYCKEDYYSPSLDGPYRRFSVQRCARCHLGISASEMVMRA 136
Query: 114 KNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
++ +YH+ CF C C K L GD F +++ ++C+ E +
Sbjct: 137 RDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEAL 177
>gi|195353746|ref|XP_002043364.1| GM16501 [Drosophila sechellia]
gi|194127487|gb|EDW49530.1| GM16501 [Drosophila sechellia]
Length = 535
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 72/148 (48%), Gaps = 30/148 (20%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
R L C GCG QI D++ L + WHA+CL+C C Q L+ +C+ R
Sbjct: 209 RNLDDCSGCGRQIQDRFYLSAV-EKRWHASCLQCYACRQPLERESSCYSR---------- 257
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTK-CEKCNLNFKREDFVMRAKNKIYHV 120
DG YCK DY FGT+ C +C + + VMRA+N ++HV
Sbjct: 258 ------------------DGNIYCKNDYYSFFGTRRCSRCLASISSNELVMRARNLVFHV 299
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCK 148
CFCC VC L GD++ + + ++C+
Sbjct: 300 NCFCCTVCHTPLTKGDQYGIIDALIYCR 327
>gi|297685312|ref|XP_002820236.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Pongo abelii]
Length = 414
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 75/161 (46%), Gaps = 38/161 (23%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 49 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 83
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYV---------RLFGTKCEKCNLNFKREDFVMRA 113
L+ TCF +DG YCK DY R +C +C+L + VMRA
Sbjct: 84 ----KLNLESELTCFSKDGSIYCKEDYYSPSLHGPYRRFSVQRCARCHLGISASEMVMRA 139
Query: 114 KNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
++ +YH+ CF C C K L GD F +++ ++C+ E +
Sbjct: 140 RDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEAL 180
>gi|431898812|gb|ELK07182.1| LIM/homeobox protein Lhx2 [Pteropus alecto]
Length = 414
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 75/161 (46%), Gaps = 38/161 (23%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 49 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 83
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYV---------RLFGTKCEKCNLNFKREDFVMRA 113
L+ TCF +DG YCK DY R +C +C+L + VMRA
Sbjct: 84 ----KLNLESELTCFSKDGSIYCKEDYYSPSFDGPYRRFSVQRCARCHLGISASEMVMRA 139
Query: 114 KNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
++ +YH+ CF C C K L GD F +++ ++C+ E +
Sbjct: 140 RDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEAL 180
>gi|194864184|ref|XP_001970812.1| ap [Drosophila erecta]
gi|190662679|gb|EDV59871.1| ap [Drosophila erecta]
Length = 469
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 72/148 (48%), Gaps = 30/148 (20%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
R L C GCG QI D++ L + WHA+CL+C C Q L+ +C+ R
Sbjct: 143 RNLDDCSGCGRQIQDRFYLSAV-EKRWHASCLQCYACRQPLERESSCYSR---------- 191
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTK-CEKCNLNFKREDFVMRAKNKIYHV 120
DG YCK DY FGT+ C +C + + VMRA+N ++HV
Sbjct: 192 ------------------DGNIYCKNDYYSFFGTRRCSRCLASISSNELVMRARNLVFHV 233
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCK 148
CFCC VC L GD++ + + ++C+
Sbjct: 234 NCFCCTVCHTPLTKGDQYGIIDALIYCR 261
>gi|380030211|ref|XP_003698747.1| PREDICTED: LOW QUALITY PROTEIN: LIM homeobox transcription factor
1-beta-like [Apis florea]
Length = 402
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 73/148 (49%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GCG I D+Y+++VA +H CL CA C T +
Sbjct: 56 TICAGCGRTIVDKYVMQVA-GRNYHEECLSCAAC-------ATPLIH------------- 94
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+CF+R+ K YC+ DY R+FG KC +C DFV+R ++HV+CF
Sbjct: 95 ----------SCFIRELKLYCRTDYERIFGVKCARCMEKISCSDFVLRTPGSVFHVECFA 144
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C +CG+ L PG + LR+ C+ D+E
Sbjct: 145 CCMCGQPLPPGAHYXLRQGQPICRRDYE 172
Score = 37.0 bits (84), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 10/94 (10%)
Query: 18 YILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV------SSEKNQFLD 71
++LR P +H C C C Q L +R G+ C+RDY S + + LD
Sbjct: 129 FVLRT-PGSVFHVECFACCMCGQPLPPGAHYXLRQGQPICRRDYEHELYLNSPQDDDLLD 187
Query: 72 ENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFK 105
+N RDG+ KR L + + +F+
Sbjct: 188 DNRP---RDGRRGPKRPRTILTSAQRRQFKASFE 218
>gi|24585889|ref|NP_724428.1| apterous, isoform A [Drosophila melanogaster]
gi|195580840|ref|XP_002080242.1| GD10352 [Drosophila simulans]
gi|231559|sp|P29673.1|APTE_DROME RecName: Full=Protein apterous
gi|7601|emb|CAA46276.1| developmental regulatory protein [Drosophila melanogaster]
gi|157822|gb|AAA28673.1| LIM-homeodomain apterous protein [Drosophila melanogaster]
gi|7302219|gb|AAF57314.1| apterous, isoform A [Drosophila melanogaster]
gi|28912908|gb|AAO61758.1| HL02012p [Drosophila melanogaster]
gi|194192251|gb|EDX05827.1| GD10352 [Drosophila simulans]
gi|220942502|gb|ACL83794.1| ap-PA [synthetic construct]
gi|220952712|gb|ACL88899.1| ap-PA [synthetic construct]
Length = 469
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 72/148 (48%), Gaps = 30/148 (20%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
R L C GCG QI D++ L + WHA+CL+C C
Sbjct: 143 RNLDDCSGCGRQIQDRFYLSAV-EKRWHASCLQCYAC----------------------- 178
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTK-CEKCNLNFKREDFVMRAKNKIYHV 120
Q L+ +C+ RDG YCK DY FGT+ C +C + + VMRA+N ++HV
Sbjct: 179 -----RQPLERESSCYSRDGNIYCKNDYYSFFGTRRCSRCLASISSNELVMRARNLVFHV 233
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCK 148
CFCC VC L GD++ + + ++C+
Sbjct: 234 NCFCCTVCHTPLTKGDQYGIIDALIYCR 261
>gi|281360182|ref|NP_001163058.1| apterous, isoform C [Drosophila melanogaster]
gi|17862966|gb|AAL39960.1| SD05618p [Drosophila melanogaster]
gi|272432345|gb|ACZ94338.1| apterous, isoform C [Drosophila melanogaster]
Length = 468
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 72/148 (48%), Gaps = 30/148 (20%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
R L C GCG QI D++ L + WHA+CL+C C
Sbjct: 142 RNLDDCSGCGRQIQDRFYLSAV-EKRWHASCLQCYAC----------------------- 177
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTK-CEKCNLNFKREDFVMRAKNKIYHV 120
Q L+ +C+ RDG YCK DY FGT+ C +C + + VMRA+N ++HV
Sbjct: 178 -----RQPLERESSCYSRDGNIYCKNDYYSFFGTRRCSRCLASISSNELVMRARNLVFHV 232
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCK 148
CFCC VC L GD++ + + ++C+
Sbjct: 233 NCFCCTVCHTPLTKGDQYGIIDALIYCR 260
>gi|338720511|ref|XP_001502198.3| PREDICTED: LIM/homeobox protein Lhx2-like [Equus caballus]
Length = 373
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 75/161 (46%), Gaps = 38/161 (23%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 8 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 42
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYV---------RLFGTKCEKCNLNFKREDFVMRA 113
L+ TCF +DG YCK DY R +C +C+L + VMRA
Sbjct: 43 ----KLNLESELTCFSKDGSIYCKEDYYSPSLDGPYRRFSVQRCARCHLGISASEMVMRA 98
Query: 114 KNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
++ +YH+ CF C C K L GD F +++ ++C+ E +
Sbjct: 99 RDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEAL 139
>gi|328705917|ref|XP_001945631.2| PREDICTED: LIM/homeobox protein Lhx5-like [Acyrthosiphon pisum]
Length = 555
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 87/178 (48%), Gaps = 40/178 (22%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WHA C++CA+CH L + C
Sbjct: 117 CAGCDKPIMDKFLLNVL-DRAWHAECVKCADCHGTLSDKC-------------------- 155
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
+ RDGK CK D+ R +G KC C D V +A++K++H+ CF C+
Sbjct: 156 ----------YSRDGKILCKPDFYRRYGKKCNGCAQGISPTDLVRKARDKVFHLNCFTCM 205
Query: 127 VCGKQLVPGDEFALREDGLF-CKDDH------EGMDK--SSNGENNNNNTNINNNLHN 175
+C KQL G+E + ED F CKDD+ +G+D S E+ +++ +N++ +
Sbjct: 206 ICRKQLSTGEELYVLEDNKFICKDDYISGKNGQGIDSLTYSGSEDEDDDETTSNSISS 263
>gi|443696309|gb|ELT97042.1| hypothetical protein CAPTEDRAFT_167444 [Capitella teleta]
Length = 444
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 72/150 (48%), Gaps = 30/150 (20%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C GCG I D+Y L WH CL C +CH+ LD TC+
Sbjct: 98 ICAGCGETITDRYYLTTVEQC-WHVHCLMCVDCHRPLDTQMTCYA--------------- 141
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTK-CEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+DG YCK DY R F K C +C+++ + VM+A+ ++H+ CF
Sbjct: 142 -------------KDGNIYCKEDYYRRFAVKQCARCHMSIASHEMVMKARQMVFHLNCFT 188
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
C VC K L PG+ F ++ D ++C+ +E M
Sbjct: 189 CCVCMKMLTPGEHFGMQHDMVYCRVHYEDM 218
>gi|157137277|ref|XP_001663968.1| arrowhead [Aedes aegypti]
gi|108869746|gb|EAT33971.1| AAEL013763-PA, partial [Aedes aegypti]
Length = 211
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 86/179 (48%), Gaps = 35/179 (19%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC QI D+YI V+ WH +CLRC+ C YC
Sbjct: 13 CGGCAEQITDRYIFEVS-GCAWHGSCLRCSIC-----------------YCS-------- 46
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
L+ +C+ +DG+ YCK DY++ F C KC+ + D+V RA++ ++H+ CF C
Sbjct: 47 ---LERQVSCYFKDGEVYCKTDYIKKFKASCAKCSRSISPSDWVRRARDFVFHLACFACD 103
Query: 127 VCGKQLVPGDEFALREDGLFCKDDH-----EGMDKSSNG-ENNNNNTNINNNLHNLNNE 179
CG+QL G++FA+ +D + CK + +G S +G + N+ N + E
Sbjct: 104 SCGRQLSTGEQFAIIDDRVLCKTHYMELIDDGTTSSEDGCDAEGNSKNKTKRIRTTFTE 162
>gi|321454678|gb|EFX65839.1| hypothetical protein DAPPUDRAFT_65174 [Daphnia pulex]
Length = 291
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 77/156 (49%), Gaps = 30/156 (19%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
+LC GCG +I D+Y L VA + WH+ CLRC EC
Sbjct: 16 TLCGGCGFKITDRYYL-VAVERAWHSECLRCGEC-------------------------- 48
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTK-CEKCNLNFKREDFVMRAKNKIYHVQCF 123
+ LD +CF R + YC+ DY RLFG + C +C L + VMRA++ ++H+ CF
Sbjct: 49 --RRPLDTALSCFSRQSRIYCRDDYYRLFGVRRCNRCCLPLGSNELVMRARDAVFHLACF 106
Query: 124 CCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSN 159
C C + L GD F +R+ ++C+ +E + S
Sbjct: 107 TCAACNQPLAKGDIFGMRDGIVYCRLHYEMLQHPST 142
>gi|195402627|ref|XP_002059906.1| apterous [Drosophila virilis]
gi|27374202|gb|AAN87274.1| ap [Drosophila virilis]
gi|194140772|gb|EDW57243.1| apterous [Drosophila virilis]
Length = 472
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 70/143 (48%), Gaps = 30/143 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCG QI D++ L + WHA+CL+C C
Sbjct: 150 CAGCGRQIQDRFYLSAV-EKRWHASCLQCYAC---------------------------- 180
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK-CEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
Q L+ +C+ RDG YCK DY FGT+ C +C + + VMRA+N ++HV CFCC
Sbjct: 181 RQPLERESSCYSRDGNIYCKNDYYSFFGTRRCSRCLASISSNELVMRARNLVFHVNCFCC 240
Query: 126 VVCGKQLVPGDEFALREDGLFCK 148
VC L GD++ + + ++C+
Sbjct: 241 TVCHTPLTKGDQYGIIDALIYCR 263
>gi|195027475|ref|XP_001986608.1| GH20430 [Drosophila grimshawi]
gi|193902608|gb|EDW01475.1| GH20430 [Drosophila grimshawi]
Length = 469
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 70/143 (48%), Gaps = 30/143 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCG QI D++ L + WHA+CL+C C
Sbjct: 148 CAGCGRQIQDRFYLSAV-EKRWHASCLQCYAC---------------------------- 178
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK-CEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
Q L+ +C+ RDG YCK DY FGT+ C +C + + VMRA+N ++HV CFCC
Sbjct: 179 RQPLERESSCYSRDGNIYCKNDYYSFFGTRRCSRCLASISSNELVMRARNLVFHVNCFCC 238
Query: 126 VVCGKQLVPGDEFALREDGLFCK 148
VC L GD++ + + ++C+
Sbjct: 239 TVCHTPLTKGDQYGIIDALIYCR 261
>gi|328925118|dbj|BAK19074.1| Bmptp-Z and Bmap-A fusion protein alpha [Bombyx mori]
Length = 466
Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 76/151 (50%), Gaps = 30/151 (19%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCG +I D+Y L +A + WH CLRC EC LD SE+
Sbjct: 132 CAGCGCRITDRYYL-LALERRWHTPCLRCCECKMPLD--------------------SEQ 170
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK-CEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
C+ RD +CK DY+RL+G K C +CN + VMRA++ ++HV CF C
Sbjct: 171 R--------CYARDSNIFCKNDYIRLYGPKRCARCNTVISASELVMRARDLVFHVHCFSC 222
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDK 156
+C L GD + +R+ ++C+ +E M +
Sbjct: 223 ALCNTPLNKGDTYGIRDAAVYCRLHYETMPE 253
>gi|195119850|ref|XP_002004442.1| GI19612 [Drosophila mojavensis]
gi|193909510|gb|EDW08377.1| GI19612 [Drosophila mojavensis]
Length = 485
Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 70/143 (48%), Gaps = 30/143 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCG QI D++ L + WHA+CL+C C
Sbjct: 163 CAGCGRQIQDRFYLSAV-EKRWHASCLQCYAC---------------------------- 193
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK-CEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
Q L+ +C+ RDG YCK DY FGT+ C +C + + VMRA+N ++HV CFCC
Sbjct: 194 RQPLERESSCYSRDGNIYCKNDYYSFFGTRRCSRCLASISSNELVMRARNLVFHVNCFCC 253
Query: 126 VVCGKQLVPGDEFALREDGLFCK 148
VC L GD++ + + ++C+
Sbjct: 254 TVCHTPLTKGDQYGIIDALIYCR 276
>gi|237512911|dbj|BAA07578.2| LIM homeodomain protein Hr-Lhx3 a-form [Halocynthia roretzi]
Length = 690
Score = 96.7 bits (239), Expect = 4e-18, Method: Composition-based stats.
Identities = 49/147 (33%), Positives = 72/147 (48%), Gaps = 32/147 (21%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC +I D++IL+V D WH+ CL+C +C L E C
Sbjct: 282 CTGCEHRIFDRFILKVQ-DKPWHSQCLKCNDCSAQLSEKC-------------------- 320
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R +CK D+ + FGTKC C + + RA++ +YH++CFCC
Sbjct: 321 ----------FSRGNLVFCKDDFFKRFGTKCTACGHGIPPTEVIRRAQDNVYHLECFCCF 370
Query: 127 VCGKQLVPGDEFALREDG-LFCKDDHE 152
+C +++ GD+F L ED L CK D+E
Sbjct: 371 LCHEKMGTGDQFYLLEDNRLVCKKDYE 397
>gi|147902022|ref|NP_001084038.1| LIM/homeobox protein Lhx5 [Xenopus laevis]
gi|1708831|sp|P37137.2|LHX5_XENLA RecName: Full=LIM/homeobox protein Lhx5; Short=LIM homeobox protein
5; AltName: Full=Homeobox protein LIM-5; Short=xLIM-5;
AltName: Full=xLIM-2A
gi|840658|gb|AAA99464.1| LIM class homeodomain protein [Xenopus laevis]
gi|54311470|gb|AAH84744.1| Lim5/Lhx5 protein [Xenopus laevis]
Length = 402
Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 75/149 (50%), Gaps = 32/149 (21%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
++ C GC I D+++L V D WH C++C EC L E C
Sbjct: 2 MAHCAGCERPILDRFLLNVL-DRAWHVKCVQCCECKCNLTEKC----------------- 43
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F R+GK YCK D+ R FGTKC C+L D V +A+NK++H+ CF
Sbjct: 44 -------------FSREGKLYCKTDFFRRFGTKCAGCSLGISPSDLVRKARNKVFHLNCF 90
Query: 124 CCVVCGKQLVPGDE-FALREDGLFCKDDH 151
C+VC KQL G+E + + E+ CK+D+
Sbjct: 91 TCMVCNKQLSTGEELYIIDENKFVCKEDY 119
>gi|126294098|ref|XP_001365314.1| PREDICTED: LIM/homeobox protein Lhx2-like [Monodelphis domestica]
Length = 408
Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 72/152 (47%), Gaps = 28/152 (18%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R + C GCGG+I D+Y L +A D +WH L+C EC + CF +DG YCK D+
Sbjct: 49 RAAFCAGCGGKISDRYSL-LAGDKQWHMLSLKCWECKLIREWEFPCFSKDGTFYCKEDF- 106
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQC 122
Y R +C +C+L + VMRA++ +YH+ C
Sbjct: 107 --------------------------YRRFSVQRCARCHLGISASEMVMRARDLVYHLNC 140
Query: 123 FCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
F C C K L GD F +++ ++C+ E +
Sbjct: 141 FTCTTCNKMLTTGDHFGMKDSLVYCRLHFEAL 172
>gi|391334316|ref|XP_003741551.1| PREDICTED: LIM domain transcription factor LMO4-A-like [Metaseiulus
occidentalis]
Length = 189
Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 75/173 (43%), Gaps = 34/173 (19%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C CGG I D+Y L A D WH +CL+C+ C
Sbjct: 37 CAACGGAIQDRYFLH-AMDRYWHHSCLKCSLC---------------------------A 68
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKN----KIYHV 120
D +CF ++ C+ DYVR+FG+ C CN D+VMRA + ++YH
Sbjct: 69 TPLADIGTSCFFKNDMILCRTDYVRMFGSPGMCAACNQMIPANDYVMRAPSMRGGQVYHP 128
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNNTNINNNL 173
CF CV C QL PGD + L LFC+ D M K+S G NN+
Sbjct: 129 TCFSCVKCQNQLKPGDRYNLVNGSLFCEQDSLKMLKTSTGTGRGRGRKAQNNV 181
>gi|299115102|dbj|BAJ09782.1| apterous 1 [Daphnia magna]
Length = 468
Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 30/165 (18%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
+LC GCG +I D+Y L VA + WH+ CLRC EC
Sbjct: 5 TLCGGCGFKITDRYYL-VAVERAWHSECLRCGEC-------------------------- 37
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTK-CEKCNLNFKREDFVMRAKNKIYHVQCF 123
+ LD +CF R + YC+ DY RLFG + C +C L + VMRA++ ++H+ CF
Sbjct: 38 --RRPLDTALSCFSRQSRIYCRDDYYRLFGVRRCNRCCLPLGSNELVMRARDAVFHLACF 95
Query: 124 CCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNNTN 168
C C + L GD F +R+ ++C+ +E + + ++ + +
Sbjct: 96 TCAACNQPLTKGDIFGMRDGIVYCRLHYEMLQHPAGSLSSTHQPH 140
>gi|259013380|ref|NP_001158395.1| lim domain homeobox 3/4 transcription factor [Saccoglossus
kowalevskii]
gi|90659991|gb|ABD97272.1| lim domain homeobox 3/4 transcription factor [Saccoglossus
kowalevskii]
Length = 390
Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 87/193 (45%), Gaps = 41/193 (21%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
++ C GC I D++IL+V D WH+ CL+C +C L + C+ R G+ YCK D+
Sbjct: 31 QIPKCSGCEHPILDRFILKVQ-DRAWHSKCLKCTDCQAQLSDK--CYSRGGQVYCKEDF- 86
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQC 122
F R FGTKC C+ V RA++ +YH+QC
Sbjct: 87 --------------FKR-------------FGTKCSACDQGIPPTQVVRRAQDNVYHLQC 119
Query: 123 FCCVVCGKQLVPGDEFALREDG-LFCKDDHEGM--------DKSSNGENNNNNTNIN-NN 172
F CV+C +QL GDEF L D L CK D+E D + N T I+
Sbjct: 120 FACVMCNRQLATGDEFYLMNDNKLVCKGDYEAAKVRGGTDSDLEMDASNKRPRTTISAKQ 179
Query: 173 LHNLNNEGSNSGK 185
L L +NS K
Sbjct: 180 LETLKTAYANSPK 192
>gi|391342697|ref|XP_003745652.1| PREDICTED: LIM/homeobox protein Lhx1-like [Metaseiulus
occidentalis]
Length = 363
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 83/171 (48%), Gaps = 32/171 (18%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
++ C GC I D+++L V D WHA C++C++C L E C
Sbjct: 2 KMVQCAGCERPILDRFLLHVL-DRSWHAKCVQCSDCRCSLSEKC---------------- 44
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQC 122
F RDGK +C+ D+ + FGTKC C D V RA++K++H++C
Sbjct: 45 --------------FSRDGKLFCRSDFYKRFGTKCAGCAQGISPTDLVRRARSKVFHLKC 90
Query: 123 FCCVVCGKQLVPGDE-FALREDGLFCKDDHEGMDKSSNGENNNNNTNINNN 172
F C+VC KQL G+E + L E+ CK+D+ + +G + N + N
Sbjct: 91 FTCLVCRKQLSTGEELYVLDENRFICKEDYLNQRQQGSGPESQMNVADDGN 141
>gi|328925120|dbj|BAK19075.1| Bmptp-Z and Bmap-A fusion protein beta [Bombyx mori]
Length = 444
Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 76/151 (50%), Gaps = 30/151 (19%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCG +I D+Y L +A + WH CLRC EC LD SE+
Sbjct: 132 CAGCGCRITDRYYL-LALERRWHTPCLRCCECKMPLD--------------------SEQ 170
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK-CEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
C+ RD +CK DY+RL+G K C +CN + VMRA++ ++HV CF C
Sbjct: 171 R--------CYARDSNIFCKNDYIRLYGPKRCARCNTVISASELVMRARDLVFHVHCFSC 222
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDK 156
+C L GD + +R+ ++C+ +E M +
Sbjct: 223 ALCNTPLNKGDTYGIRDAAVYCRLHYETMPE 253
>gi|426223032|ref|XP_004005683.1| PREDICTED: LIM homeobox transcription factor 1-beta [Ovis aries]
Length = 405
Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 87/188 (46%), Gaps = 42/188 (22%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D++++RV + WH CL+CA C Q L
Sbjct: 56 CEGCQRPISDRFLMRVN-ESSWHEECLQCAACQQAL------------------------ 90
Query: 67 NQFLDENCTCFVRDGKTYCKRDY------VRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+
Sbjct: 91 ------TTSCYFRDRKLYCKQDYGVAGTLQQLFAAKCSGCMEKIAPTEFVMRALECVYHL 144
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEG----MDKSSNGENNN-NNTNINNNLHN 175
CFCC VC +QL GDEF L+E L CK D+E + S E+++ + + + ++
Sbjct: 145 GCFCCCVCERQLRKGDEFVLKEGQLLCKGDYEKEKDLLSSVSPDESDSVKSEDEDGDMKP 204
Query: 176 LNNEGSNS 183
+GS S
Sbjct: 205 AKGQGSQS 212
>gi|328779726|ref|XP_001120677.2| PREDICTED: LIM homeobox transcription factor 1-beta-like [Apis
mellifera]
Length = 402
Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 73/148 (49%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GCG I D+Y+++VA +H CL CA C T +
Sbjct: 56 TICAGCGRTIVDKYVMQVA-GRNYHEECLSCAAC-------ATPLIH------------- 94
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+CF+R+ K YC+ DY R+FG KC +C DFV+R ++HV+CF
Sbjct: 95 ----------SCFIRELKLYCRTDYERIFGVKCARCMEKISCSDFVLRTPGSVFHVECFA 144
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C +CG+ L PG + LR+ C+ D+E
Sbjct: 145 CCMCGQPLPPGAHYFLRQGQPICRRDYE 172
Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 18 YILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV------SSEKNQFLD 71
++LR P +H C C C Q L F+R G+ C+RDY S + + LD
Sbjct: 129 FVLRT-PGSVFHVECFACCMCGQPLPPGAHYFLRQGQPICRRDYEHELYLNSPQDDDLLD 187
Query: 72 ENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFK 105
+N RDG+ KR L + + +F+
Sbjct: 188 DNRP---RDGRRGPKRPRTILTSAQRRQFKASFE 218
>gi|62859483|ref|NP_001016082.1| LIM homeobox 5 [Xenopus (Silurana) tropicalis]
gi|89269010|emb|CAJ81605.1| LIM homeobox 5 [Xenopus (Silurana) tropicalis]
gi|189441838|gb|AAI67665.1| LIM homeobox 5 [Xenopus (Silurana) tropicalis]
gi|213624072|gb|AAI70608.1| LIM homeobox 5 [Xenopus (Silurana) tropicalis]
gi|213624092|gb|AAI70634.1| LIM homeobox 5 [Xenopus (Silurana) tropicalis]
Length = 402
Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 73/146 (50%), Gaps = 32/146 (21%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 5 CAGCERPILDRFLLNVL-DRAWHVKCVQCCECKCNLTEKC-------------------- 43
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK YCK D+ R FGTKC C+L D V +A+NK++H+ CF C+
Sbjct: 44 ----------FSREGKLYCKTDFFRRFGTKCAGCSLGISPSDLVRKARNKVFHLNCFTCM 93
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDH 151
VC KQL G+E + + E+ CK+D+
Sbjct: 94 VCNKQLSTGEELYIIDENKFVCKEDY 119
>gi|291240630|ref|XP_002740222.1| PREDICTED: LIM domain only 4-like [Saccoglossus kowalevskii]
Length = 180
Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 76/165 (46%), Gaps = 36/165 (21%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCG +I D+++L A D WH CL+C C L E
Sbjct: 43 CAGCGVKIMDRFLLH-ALDRYWHTGCLKCTCCGAQLGE---------------------- 79
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+CF + G CK+DY+RLFG C C + + VMRA+ +YH +CF
Sbjct: 80 -----LGPSCFSKGGMILCKKDYLRLFGNSGACSSCGQSIPASELVMRAQGNVYHQKCFA 134
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNNTNI 169
C C QLVPGD F + LFC+ DH + ++ NNNT I
Sbjct: 135 CTSCHNQLVPGDRFLIVNGNLFCETDHLKILRA------NNNTGI 173
>gi|443711321|gb|ELU05149.1| hypothetical protein CAPTEDRAFT_228137 [Capitella teleta]
Length = 506
Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 73/150 (48%), Gaps = 32/150 (21%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ C GCG I D++IL+V D WH+ CL CA+C+ L + C
Sbjct: 141 IPKCAGCGDAILDRFILKVL-DRSWHSKCLMCADCNGHLSDKC----------------- 182
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F + K YCK D+ R FGTKC C V RA++ +YH++CF
Sbjct: 183 -------------FSKGDKVYCKEDFFRRFGTKCAGCEQGIPPTQVVRRAQDNVYHLECF 229
Query: 124 CCVVCGKQLVPGDEFALRED-GLFCKDDHE 152
C +C +QL GDEF L +D L CK D+E
Sbjct: 230 ACSMCSQQLNTGDEFYLMDDKKLVCKGDYE 259
>gi|440808054|gb|AGC24170.1| islet, partial [Lymnaea stagnalis]
Length = 189
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 54/73 (73%), Gaps = 1/73 (1%)
Query: 90 VRLFGTKCEKCNLNFKREDFVMRA-KNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCK 148
VRLFGTKC +C L F RED VMR K +YH+ CF C+VC K LV GDEFA+R+DGLFC+
Sbjct: 1 VRLFGTKCSRCGLGFCREDVVMRPTKGTVYHLNCFRCIVCNKPLVTGDEFAIRDDGLFCR 60
Query: 149 DDHEGMDKSSNGE 161
DH+ +D+S G
Sbjct: 61 ADHDVIDRSVTGS 73
>gi|157128769|ref|XP_001661512.1| arrowhead [Aedes aegypti]
gi|108872464|gb|EAT36689.1| AAEL011247-PA [Aedes aegypti]
Length = 271
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 81/179 (45%), Gaps = 38/179 (21%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
L C CG I D+Y+ V WH +CLRC+ C L+ +C+ R
Sbjct: 19 LRTCTACGEPIADKYLFDVD-GCSWHGSCLRCSVCLTLLERQPSCYFR------------ 65
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
D + YC+ DY + FG KC KC+ D+V +A++ ++H+ CF
Sbjct: 66 ----------------DRQVYCRSDYAKTFGAKCSKCSRTIAPSDWVRKARDLVFHLACF 109
Query: 124 CCVVCGKQLVPGDEFALREDGLFCK-------DDHEGMDK--SSNGENNNNNTNINNNL 173
C CG+QL G++FAL +D + CK DD D S++G N N + +
Sbjct: 110 SCDTCGRQLSTGEQFALIDDKVMCKIHYMDNADDSNSSDDGCSTDGFNKNKSKRVRTTF 168
>gi|52354701|gb|AAH82847.1| Unknown (protein for MGC:81549) [Xenopus laevis]
Length = 402
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 75/152 (49%), Gaps = 32/152 (21%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
++ C GC I D+++L V D WH C++C EC L E C
Sbjct: 2 MAHCAGCERPILDRFLLNVL-DRAWHVKCVQCCECKCNLTEKC----------------- 43
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F RD K YCK D+ R FGTKC C+L D V +A+NK++H+ CF
Sbjct: 44 -------------FSRDSKLYCKTDFFRRFGTKCAGCSLGISPSDLVRKARNKVFHLNCF 90
Query: 124 CCVVCGKQLVPGDE-FALREDGLFCKDDHEGM 154
C+VC KQL G+E + + E+ CK+D+ +
Sbjct: 91 TCMVCNKQLSTGEELYIIDENKFVCKEDYTSV 122
>gi|328925128|dbj|BAK19079.1| apterous A splicing isoform type B [Bombyx mori]
Length = 398
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 76/151 (50%), Gaps = 30/151 (19%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCG +I D+Y L +A + WH CLRC EC LD SE+
Sbjct: 64 CAGCGCRITDRYYL-LALERRWHTPCLRCCECKMPLD--------------------SEQ 102
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK-CEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
C+ RD +CK DY+RL+G K C +CN + VMRA++ ++HV CF C
Sbjct: 103 R--------CYARDSNIFCKNDYIRLYGPKRCARCNTVISASELVMRARDLVFHVHCFSC 154
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDK 156
+C L GD + +R+ ++C+ +E M +
Sbjct: 155 ALCNTPLNKGDTYGIRDAAVYCRLHYETMPE 185
>gi|88954018|gb|ABD59002.1| LIM-homeodomain protein AmphiLim1/5 [Branchiostoma floridae]
Length = 464
Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 69/144 (47%), Gaps = 32/144 (22%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC + D+++L V D WHA C+RC++C L E C
Sbjct: 5 CAGCERPVLDRFLLNVL-DRAWHAKCVRCSDCSCRLTEKC-------------------- 43
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F RD K YC+ D+ R FGTKC C D V RA+NK++H++CF C
Sbjct: 44 ----------FTRDSKLYCREDFFRRFGTKCAGCTQGILPNDLVRRARNKVFHLKCFTCA 93
Query: 127 VCGKQLVPGDE-FALREDGLFCKD 149
C KQ+ G+E F + +D CKD
Sbjct: 94 ACAKQMATGEELFVVDDDKFICKD 117
>gi|2641222|gb|AAB86860.1| homeobox protein LIM-3 [Danio rerio]
Length = 374
Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 83/185 (44%), Gaps = 34/185 (18%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ +C GC I D++IL+V D WH+ CL+C++C L + C
Sbjct: 1 IPVCAGCNQHIVDRFILKVL-DRHWHSKCLKCSDCQSQLADKC----------------- 42
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F R YCK D+ + FGTKC C V RA++ +YH+ C
Sbjct: 43 -------------FSRGDSVYCKDDFFKRFGTKCAACQQGIPPTQVVRRAQDFVYHLHCN 89
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHE-GMDKSSNGENNNNNTNIN-NNLHNLNNEG 180
C+VC +QL GDE+ L ED L CK D+E + ++ T I L L N
Sbjct: 90 ACIVCKRQLATGDEYYLMEDSRLVCKADYETAKQREADSTAKRPRTTITAKQLETLKNAY 149
Query: 181 SNSGK 185
+NS K
Sbjct: 150 NNSPK 154
>gi|348533440|ref|XP_003454213.1| PREDICTED: LIM/homeobox protein Lhx6-like [Oreochromis niloticus]
Length = 392
Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 73/148 (49%), Gaps = 29/148 (19%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C CG +IHD+Y+L+V +L WH CL C+ C
Sbjct: 114 CASCGMEIHDRYLLKVN-NLNWHLGCLECSVC---------------------------- 144
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
L ++ +C+V++ + YCK DY FGTKC +C D+V RA+ +YH+ CF C
Sbjct: 145 RASLRQHSSCYVKNKEIYCKLDYFSRFGTKCAQCGRQVYASDWVRRARGSVYHLACFACF 204
Query: 127 VCGKQLVPGDEFALREDGLFCKDDHEGM 154
C +QL G+EF L E + C+ ++ M
Sbjct: 205 SCKRQLSTGEEFGLVEGRVLCRSHYDIM 232
>gi|449268595|gb|EMC79451.1| LIM/homeobox protein Lhx2 [Columba livia]
Length = 416
Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 75/164 (45%), Gaps = 47/164 (28%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCGG+I D+Y L +A D +WH CL+C EC
Sbjct: 49 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCEC------------------------ 83
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT------------------KCEKCNLNF 104
L+ TCF +DG YCK DY R G +C +C+L
Sbjct: 84 ----KLNLESELTCFSKDGSIYCKEDYYRGGGMHLSPSLLAVLFYRRFSVQRCARCHLGI 139
Query: 105 KREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCK 148
+ VMRA++ +YH+ CF C C K L GD F ++++ ++C+
Sbjct: 140 SASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDNLVYCR 183
>gi|426222898|ref|XP_004005617.1| PREDICTED: LIM/homeobox protein Lhx3 [Ovis aries]
Length = 401
Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 78/181 (43%), Gaps = 34/181 (18%)
Query: 8 VGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKN 67
GC I D++ L+ WH+ CL+C++CH L E C
Sbjct: 35 AGCAQPILDRFTLKAL-GRHWHSKCLKCSDCHAPLAERC--------------------- 72
Query: 68 QFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVV 127
F R YCK D+ + FGTKC C L V RA++ +YH+ CF CVV
Sbjct: 73 ---------FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVV 123
Query: 128 CGKQLVPGDEFALREDG-LFCKDDHE-GMDKSSNGENNNNNTNIN-NNLHNLNNEGSNSG 184
C +QL GDEF L ED L CK D+E + + T I L L + + S
Sbjct: 124 CKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKSAYNTSP 183
Query: 185 K 185
K
Sbjct: 184 K 184
>gi|307166312|gb|EFN60494.1| LIM/homeobox protein Lhx9 [Camponotus floridanus]
Length = 487
Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 68/145 (46%), Gaps = 30/145 (20%)
Query: 9 GCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQ 68
GCG +I +++ LR A D WH CLRC C C V
Sbjct: 139 GCGREIAERWYLRAA-DRAWHCGCLRC----------CHCRVP----------------- 170
Query: 69 FLDENCTCFVRDGKTYCKRDYVRLFG-TKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVV 127
L TCF RDG YCK DY RLF ++C +C + VMRA++ +YHV CF C
Sbjct: 171 -LAAELTCFARDGNIYCKEDYYRLFAVSRCSRCRAGISASELVMRARDLVYHVACFTCAS 229
Query: 128 CGKQLVPGDEFALREDGLFCKDDHE 152
CG L GD F R ++C+ +E
Sbjct: 230 CGTPLNKGDHFGQRNGLVYCRPHYE 254
>gi|195050066|ref|XP_001992820.1| GH13485 [Drosophila grimshawi]
gi|193899879|gb|EDV98745.1| GH13485 [Drosophila grimshawi]
Length = 451
Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 91/193 (47%), Gaps = 42/193 (21%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ C GC I D++IL+V + WHA CL+C+ECH L++ CF R+G
Sbjct: 39 IPKCGGCHELILDRFILKVL-ERTWHAKCLQCSECHSQLNDK--CFARNG---------- 85
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
+ +CK D+ + +GTKC C++ V RA++ +YH+QCF
Sbjct: 86 ------------------QLFCKEDFFKRYGTKCSACDMGIPPTQVVRRAQDNVYHLQCF 127
Query: 124 CCVVCGKQLVPGDEFALRED-GLFCKDDHEG-------MDKSSNGENNNN---NTNINNN 172
C +C + L GDEF L ED L CK D+E +D S +G+ N T
Sbjct: 128 LCAMCSRTLNTGDEFYLMEDRKLICKRDYEEAKAKGLYLDGSLDGDQPNKRPRTTITAKQ 187
Query: 173 LHNLNNEGSNSGK 185
L L +NS K
Sbjct: 188 LETLKTAYNNSPK 200
>gi|427795151|gb|JAA63027.1| hypothetical protein, partial [Rhipicephalus pulchellus]
Length = 182
Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 71/154 (46%), Gaps = 30/154 (19%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCG +I D+Y+L A D WH CL+C+ C L
Sbjct: 42 CAGCGAKILDRYLLH-ALDRYWHNGCLKCSCCQATLA----------------------- 77
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFC 124
D +CF + G C+ DY+RLFGT C C D+VMRA +YHV+CF
Sbjct: 78 ----DIGASCFAKAGMILCRNDYIRLFGTSGACSGCGQMIPANDYVMRAAQNVYHVKCFA 133
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSS 158
CV C QLVPGD + L + C+ D M K S
Sbjct: 134 CVKCHSQLVPGDRYNLVNGNVLCEQDCLKMLKGS 167
>gi|328925130|dbj|BAK19080.1| apterous A splicing isoform type C [Bombyx mori]
Length = 385
Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 76/151 (50%), Gaps = 30/151 (19%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCG +I D+Y L +A + WH CLRC EC LD SE+
Sbjct: 64 CAGCGCRITDRYYL-LALERRWHTPCLRCCECKMPLD--------------------SEQ 102
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK-CEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
C+ RD +CK DY+RL+G K C +CN + VMRA++ ++HV CF C
Sbjct: 103 R--------CYARDSNIFCKNDYIRLYGPKRCARCNTVISASELVMRARDLVFHVHCFSC 154
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDK 156
+C L GD + +R+ ++C+ +E M +
Sbjct: 155 ALCNTPLNKGDTYGIRDAAVYCRLHYETMPE 185
>gi|432872837|ref|XP_004072149.1| PREDICTED: LIM/homeobox protein Lhx6-like [Oryzias latipes]
Length = 346
Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 73/148 (49%), Gaps = 29/148 (19%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C CG +IHD+Y+L+V +L WH CL C+ C
Sbjct: 68 CANCGIEIHDRYLLKVN-NLNWHLGCLECSVC---------------------------- 98
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
L ++ +C+V++ + YCK DY FGTKC +C D+V RA+ +YH+ CF C
Sbjct: 99 RASLHQHSSCYVKNKEIYCKLDYFSRFGTKCAQCGRQVYASDWVRRARGSVYHLACFACF 158
Query: 127 VCGKQLVPGDEFALREDGLFCKDDHEGM 154
C +QL G+EF L E + C+ ++ M
Sbjct: 159 SCKRQLSTGEEFGLVEGRVLCRSHYDIM 186
>gi|339247641|ref|XP_003375454.1| LIM/homeobox protein Lhx3 [Trichinella spiralis]
gi|316971202|gb|EFV55014.1| LIM/homeobox protein Lhx3 [Trichinella spiralis]
Length = 305
Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 74/141 (52%), Gaps = 29/141 (20%)
Query: 14 IHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDEN 73
I+D+++L VA + WH CL C+ C L
Sbjct: 3 INDRFMLNVAGNF-WHERCLVCSIC----------------------------GLELSLA 33
Query: 74 CTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLV 133
+CF+RDGK C+ DY+R++G+KC KC L DFV R++++I+H+ CF C +CGK L
Sbjct: 34 PSCFLRDGKVLCRGDYLRIYGSKCAKCALPLNPSDFVQRSQDRIFHMNCFGCSICGKLLQ 93
Query: 134 PGDEFALREDGLFCKDDHEGM 154
PGDE+ + + + C+ D E +
Sbjct: 94 PGDEYVRQNEQILCRGDFESL 114
>gi|405975209|gb|EKC39790.1| LIM/homeobox protein Lhx5 [Crassostrea gigas]
Length = 471
Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 73/146 (50%), Gaps = 32/146 (21%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C C I D+++L V D WHA C++C++C L + C
Sbjct: 4 CAACDRPILDRFLLNVL-DRAWHAKCVQCSDCKTTLTDKC-------------------- 42
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F RDGK +C+ D+ R FGTKC C D V RA+NK++H++CF C+
Sbjct: 43 ----------FSRDGKLFCRNDFFRRFGTKCAGCTQGISPNDLVRRARNKVFHLKCFTCI 92
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDH 151
+C KQL G+E + + E+ CK+D+
Sbjct: 93 ICRKQLSTGEELYVMDENRFICKEDY 118
>gi|158296017|ref|XP_001237835.2| AGAP006537-PA [Anopheles gambiae str. PEST]
gi|157016310|gb|EAU76621.2| AGAP006537-PA [Anopheles gambiae str. PEST]
Length = 271
Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 80/176 (45%), Gaps = 41/176 (23%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K C C I D+YI V WH +CLRC C +C
Sbjct: 2 KTEFKTCGSCAEPITDRYIFEVNGS-AWHGSCLRCTVC-----------------FCP-- 41
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
L+ +C++RDG YCK DY++ F T C KC + D+V RA+ ++H+
Sbjct: 42 ---------LERQVSCYLRDGDMYCKSDYIKKFKTSCAKCARSISATDWVRRAREYVFHL 92
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCK-------DD-----HEGMDKSSNGENNN 164
CF C CG+QL G++FA+ ED + CK DD +G+D NG+N
Sbjct: 93 ACFACDSCGRQLSTGEQFAICEDRVLCKTHYMELIDDGTTSSEDGLDADGNGKNKT 148
>gi|312385469|gb|EFR29961.1| hypothetical protein AND_00756 [Anopheles darlingi]
Length = 344
Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 85/172 (49%), Gaps = 18/172 (10%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV- 62
L +C CG I D+Y+ + WH +CLRC+ C L+ +C+ RD YC+ DY
Sbjct: 10 LRICTACGEPIADKYLFDI-DGCAWHGSCLRCSVCLTLLERQPSCYFRDRHVYCRADYAN 68
Query: 63 -----------SSEKNQFLDENCTCFVRDGKTYCKR---DYVRLFGTKCEKCNLNFKRED 108
S+++ Q + C+ R + R + FG KC KC D
Sbjct: 69 TASTDSKPPGTSTKQQQQQQQQVVCYHRRDREVLDRFPGPLLLTFGAKCSKCCRTIAASD 128
Query: 109 FVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNG 160
+V +A++ ++H+ CF C CG+QL G++FAL +D + C+ + MD +G
Sbjct: 129 WVRKARDLVFHLACFSCDTCGRQLSTGEQFALIDDKVMCRSHY--MDTVDDG 178
>gi|402591685|gb|EJW85614.1| hypothetical protein WUBG_03477, partial [Wuchereria bancrofti]
Length = 103
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 70/134 (52%), Gaps = 31/134 (23%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+++C GC I D+Y+ V WHA+C++CA+C + L E
Sbjct: 1 MAICAGCNNAILDRYVFHVLEK-AWHASCIQCADCKELLSE------------------- 40
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
TCF RDG C++D+ R +GT+C CN+ R D V RA++KI+HVQCF
Sbjct: 41 -----------TCFTRDGLILCRKDFARRYGTRCAGCNMGLDRNDLVRRARDKIFHVQCF 89
Query: 124 CCVVCGKQLVPGDE 137
C VC K+L G++
Sbjct: 90 QCTVCQKKLDTGEQ 103
>gi|328925116|dbj|BAK19073.1| apterous A splicing isoform type A [Bombyx mori]
Length = 376
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 76/151 (50%), Gaps = 30/151 (19%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCG +I D+Y L +A + WH CLRC EC LD SE+
Sbjct: 64 CAGCGCRITDRYYL-LALERRWHTPCLRCCECKMPLD--------------------SEQ 102
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK-CEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
C+ RD +CK DY+RL+G K C +CN + VMRA++ ++HV CF C
Sbjct: 103 R--------CYARDSNIFCKNDYIRLYGPKRCARCNTVISASELVMRARDLVFHVHCFSC 154
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDK 156
+C L GD + +R+ ++C+ +E M +
Sbjct: 155 ALCNTPLNKGDTYGIRDAAVYCRLHYETMPE 185
>gi|195115252|ref|XP_002002178.1| GI17237 [Drosophila mojavensis]
gi|193912753|gb|EDW11620.1| GI17237 [Drosophila mojavensis]
Length = 449
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 91/193 (47%), Gaps = 42/193 (21%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ C GC I D++IL+V + WHA CL+C+ECH L++ CF R+G
Sbjct: 39 IPKCGGCHELILDRFILKVL-ERTWHAKCLQCSECHAQLNDK--CFARNG---------- 85
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
+ +CK D+ + +GTKC C++ V RA++ +YH+QCF
Sbjct: 86 ------------------QLFCKEDFFKRYGTKCSACDMGIPPTQVVRRAQDNVYHLQCF 127
Query: 124 CCVVCGKQLVPGDEFALRED-GLFCKDDHEG-------MDKSSNGENNNN---NTNINNN 172
C +C + L GDEF L ED L CK D+E +D S +G+ N T
Sbjct: 128 LCAMCSRTLNTGDEFYLMEDRKLICKRDYEEAKAKGLYLDGSLDGDQPNKRPRTTITAKQ 187
Query: 173 LHNLNNEGSNSGK 185
L L +NS K
Sbjct: 188 LETLKTAYNNSPK 200
>gi|395541258|ref|XP_003772563.1| PREDICTED: LIM/homeobox protein Lhx8-like [Sarcophilus harrisii]
Length = 365
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 80/161 (49%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C GC +I D+Y+L+V D+ WH CL C+ C L ++ TCF
Sbjct: 84 VCSGCRLEILDKYLLKVN-DMYWHMQCLCCSVCQTSLGKHATCF---------------- 126
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
++D +CK DY+R FGT C C D+V +A+ +YH+ CF C
Sbjct: 127 ------------IKDNTIFCKIDYLRKFGTCCCGCGRYVCSSDWVQKARGYVYHLACFVC 174
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL GDEFAL E+ + C+ ++G++ S E N N
Sbjct: 175 FSCKRQLSTGDEFALVEEKVLCRIHYDGLEDSLKREAENGN 215
>gi|328708271|ref|XP_001949712.2| PREDICTED: LIM/homeobox protein Awh-like [Acyrthosiphon pisum]
Length = 346
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 73/142 (51%), Gaps = 29/142 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L+V+ D WH +CLRC C C
Sbjct: 61 CRGCSDPITDRFLLKVS-DKIWHVSCLRC----------CVC------------------ 91
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
N L++ +CF++D YC++DY R FGT C KC+ +V +A++ +YH+ CF C
Sbjct: 92 NLVLEDEPSCFIKDDSIYCRQDYARSFGTVCSKCSKGISASHWVRKARDHVYHLACFRCD 151
Query: 127 VCGKQLVPGDEFALREDGLFCK 148
C +QL G+EFAL E + CK
Sbjct: 152 ACDRQLNTGEEFALHEGRVLCK 173
>gi|195398039|ref|XP_002057632.1| GJ17996 [Drosophila virilis]
gi|194141286|gb|EDW57705.1| GJ17996 [Drosophila virilis]
Length = 545
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 91/193 (47%), Gaps = 42/193 (21%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ C GC I D++IL+V + WHA CL+C+ECH L++ CF R+G
Sbjct: 123 IPKCGGCHELILDRFILKVL-ERTWHAKCLQCSECHAQLNDK--CFARNG---------- 169
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
+ +CK D+ + +GTKC C++ V RA++ +YH+QCF
Sbjct: 170 ------------------QLFCKEDFFKRYGTKCSACDMGIPPTQVVRRAQDNVYHLQCF 211
Query: 124 CCVVCGKQLVPGDEFALRED-GLFCKDDHEG-------MDKSSNGENNNN---NTNINNN 172
C +C + L GDEF L ED L CK D+E +D S +G+ N T
Sbjct: 212 LCAMCSRTLNTGDEFYLMEDRKLICKRDYEEAKAKGLYLDGSLDGDQPNKRPRTTITAKQ 271
Query: 173 LHNLNNEGSNSGK 185
L L +NS K
Sbjct: 272 LETLKTAYNNSPK 284
>gi|307196006|gb|EFN77731.1| LIM/homeobox protein Lhx9 [Harpegnathos saltator]
Length = 433
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 69/147 (46%), Gaps = 30/147 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCG +I +++ L+ A D WH CLRC C C V
Sbjct: 58 CGGCGREIAERWYLKAA-DRVWHCGCLRC----------CHCRVP--------------- 91
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFG-TKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L TCF RDG YCK DY RLF ++C +C + VMRA+ +YHV CF C
Sbjct: 92 ---LAAELTCFARDGNIYCKEDYCRLFAVSRCSRCRAGISASELVMRARELVYHVACFTC 148
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHE 152
CG L GD F R+ ++C+ +E
Sbjct: 149 ASCGTPLNKGDHFGQRDGLVYCRPHYE 175
>gi|405973461|gb|EKC38176.1| LIM/homeobox protein Awh [Crassostrea gigas]
Length = 278
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 70/143 (48%), Gaps = 29/143 (20%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
LC GCG I ++++L V WH CLRC C C +
Sbjct: 44 LCYGCGDLITERFLLHVNGQA-WHVGCLRC----------CICQIG-------------- 78
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L+ +CF+R+ YC+ DY R FGTKC KC + D+V RA+ +YH+ CF C
Sbjct: 79 ----LERQTSCFIREDNIYCRNDYSREFGTKCAKCYRTIQSTDWVRRARENVYHLACFAC 134
Query: 126 VVCGKQLVPGDEFALREDGLFCK 148
C +QL G+EFAL D + CK
Sbjct: 135 DSCKRQLSTGEEFALHGDRVLCK 157
>gi|338727662|ref|XP_001915147.2| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx5-like
[Equus caballus]
Length = 403
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 79/163 (48%), Gaps = 34/163 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 5 CAGCERPILDRFLLNVL-DRAWHIKCVQCCECKANLSEKC-------------------- 43
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK YCK D+ R FGTKC C D V +A++K++H+ CF C+
Sbjct: 44 ----------FSREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCM 93
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDHEGMDKSSNGENNNNNTN 168
VC KQL G+E + + E+ CKDD+ + SS E + N+ +
Sbjct: 94 VCNKQLSTGEELYVIDENKFVCKDDY--LSSSSLKEGSLNSVS 134
>gi|195438224|ref|XP_002067037.1| GK24239 [Drosophila willistoni]
gi|194163122|gb|EDW78023.1| GK24239 [Drosophila willistoni]
Length = 448
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 91/193 (47%), Gaps = 42/193 (21%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ C GC I D++IL+V + WHA CL+C+ECH L++ CF R+G
Sbjct: 39 IPKCGGCHELILDRFILKVL-ERTWHAKCLQCSECHGQLNDK--CFARNG---------- 85
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
+ +CK D+ + +GTKC C++ V RA++ +YH+QCF
Sbjct: 86 ------------------QLFCKEDFFKRYGTKCSACDMGIPPTQVVRRAQDNVYHLQCF 127
Query: 124 CCVVCGKQLVPGDEFALRED-GLFCKDDHEG-------MDKSSNGENNNN---NTNINNN 172
C +C + L GDEF L ED L CK D+E +D S +G+ N T
Sbjct: 128 LCAMCSRTLNTGDEFYLMEDRKLICKRDYEEAKAKGLYLDGSLDGDQPNKRPRTTITAKQ 187
Query: 173 LHNLNNEGSNSGK 185
L L +NS K
Sbjct: 188 LETLKTAYNNSPK 200
>gi|194879752|ref|XP_001974294.1| GG21652 [Drosophila erecta]
gi|190657481|gb|EDV54694.1| GG21652 [Drosophila erecta]
Length = 442
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 91/193 (47%), Gaps = 42/193 (21%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ C GC I D++IL+V + WHA CL+C+ECH L++ CF R+G
Sbjct: 39 IPKCGGCHELILDRFILKVL-ERTWHAKCLQCSECHGQLNDK--CFARNG---------- 85
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
+ +CK D+ + +GTKC C++ V RA++ +YH+QCF
Sbjct: 86 ------------------QLFCKEDFFKRYGTKCSACDMGIPPTQVVRRAQDNVYHLQCF 127
Query: 124 CCVVCGKQLVPGDEFALRED-GLFCKDDHEG-------MDKSSNGENNNN---NTNINNN 172
C +C + L GDEF L ED L CK D+E +D S +G+ N T
Sbjct: 128 LCAMCSRTLNTGDEFYLMEDRKLICKRDYEEAKAKGLYLDGSLDGDQPNKRPRTTITAKQ 187
Query: 173 LHNLNNEGSNSGK 185
L L +NS K
Sbjct: 188 LETLKTAYNNSPK 200
>gi|355564712|gb|EHH21212.1| hypothetical protein EGK_04224, partial [Macaca mulatta]
Length = 293
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 79/163 (48%), Gaps = 34/163 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 5 CAGCERPILDRFLLNVL-DRAWHIKCVQCCECKTNLSEKC-------------------- 43
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK YCK D+ R FGTKC C D V +A++K++H+ CF C+
Sbjct: 44 ----------FSREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCM 93
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDHEGMDKSSNGENNNNNTN 168
VC KQL G+E + + E+ CKDD+ + SS E + N+ +
Sbjct: 94 VCNKQLSTGEELYVIDENKFVCKDDY--LSSSSLKEGSLNSVS 134
>gi|321473071|gb|EFX84039.1| hypothetical protein DAPPUDRAFT_24627 [Daphnia pulex]
Length = 225
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 73/148 (49%), Gaps = 32/148 (21%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C GCG I D+Y++RVA D WH CL C CH L
Sbjct: 1 VCEGCGLGIADRYVMRVA-DGSWHEDCLVCCICHAPLVH--------------------- 38
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKI-YHVQCFC 124
+CF R G+ YC++DY R++G KC +C + VMRA + + +H+ CF
Sbjct: 39 ---------SCFTRSGRVYCRQDYDRVYGAKCGRCGERLYPHELVMRAGSSLAFHLPCFG 89
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C +CG+ L GD+F +R L C+DD E
Sbjct: 90 CFICGRPLQKGDQFVVRAGQLLCRDDLE 117
>gi|348551170|ref|XP_003461403.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx5-like
[Cavia porcellus]
Length = 404
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 79/163 (48%), Gaps = 34/163 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 5 CAGCERPILDRFLLNVL-DRAWHIKCVQCCECKTNLSEKC-------------------- 43
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK YCK D+ R FGTKC C D V +A++K++H+ CF C+
Sbjct: 44 ----------FSREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCM 93
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDHEGMDKSSNGENNNNNTN 168
VC KQL G+E + + E+ CKDD+ + SS E + N+ +
Sbjct: 94 VCNKQLSTGEELYVIDENKFVCKDDY--LSSSSLKEGSLNSVS 134
>gi|4106560|gb|AAD02889.1| LIM homeodomain transcription factor [Drosophila melanogaster]
Length = 440
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 91/193 (47%), Gaps = 42/193 (21%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ C GC I D++IL+V + WHA CL+C+ECH L++ CF R+G
Sbjct: 39 IPKCGGCHELILDRFILKVL-ERTWHAKCLQCSECHGQLNDK--CFARNG---------- 85
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
+ +CK D+ + +GTKC C++ V RA++ +YH+QCF
Sbjct: 86 ------------------QLFCKEDFFKRYGTKCSACDMGIPPTQVVRRAQDNVYHLQCF 127
Query: 124 CCVVCGKQLVPGDEFALRED-GLFCKDDHEG-------MDKSSNGENNNN---NTNINNN 172
C +C + L GDEF L ED L CK D+E +D S +G+ N T
Sbjct: 128 LCAMCSRTLNTGDEFYLMEDRKLICKRDYEEAKAKGLYLDGSLDGDQPNKRPRTTITAKQ 187
Query: 173 LHNLNNEGSNSGK 185
L L +NS K
Sbjct: 188 LETLKTAYNNSPK 200
>gi|17136270|ref|NP_476606.1| Lim3, isoform A [Drosophila melanogaster]
gi|7298537|gb|AAF53756.1| Lim3, isoform A [Drosophila melanogaster]
Length = 440
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 91/193 (47%), Gaps = 42/193 (21%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ C GC I D++IL+V + WHA CL+C+ECH L++ CF R+G
Sbjct: 39 IPKCGGCHELILDRFILKVL-ERTWHAKCLQCSECHGQLNDK--CFARNG---------- 85
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
+ +CK D+ + +GTKC C++ V RA++ +YH+QCF
Sbjct: 86 ------------------QLFCKEDFFKRYGTKCSACDMGIPPTQVVRRAQDNVYHLQCF 127
Query: 124 CCVVCGKQLVPGDEFALRED-GLFCKDDHEG-------MDKSSNGENNNN---NTNINNN 172
C +C + L GDEF L ED L CK D+E +D S +G+ N T
Sbjct: 128 LCAMCSRTLNTGDEFYLMEDRKLICKRDYEEAKAKGLYLDGSLDGDQPNKRPRTTITAKQ 187
Query: 173 LHNLNNEGSNSGK 185
L L +NS K
Sbjct: 188 LETLKTAYNNSPK 200
>gi|11641283|ref|NP_071758.1| LIM/homeobox protein Lhx5 [Homo sapiens]
gi|332840493|ref|XP_001153819.2| PREDICTED: LIM/homeobox protein Lhx5 [Pan troglodytes]
gi|397525022|ref|XP_003832477.1| PREDICTED: LIM/homeobox protein Lhx5 [Pan paniscus]
gi|426374256|ref|XP_004053995.1| PREDICTED: LIM/homeobox protein Lhx5 [Gorilla gorilla gorilla]
gi|18202938|sp|Q9H2C1.1|LHX5_HUMAN RecName: Full=LIM/homeobox protein Lhx5; Short=LIM homeobox protein
5
gi|11527289|gb|AAG36963.1|AF291181_1 LHX5 protein [Homo sapiens]
gi|80475867|gb|AAI09231.1| LIM homeobox 5 [Homo sapiens]
gi|119618466|gb|EAW98060.1| LIM homeobox 5 [Homo sapiens]
gi|261861188|dbj|BAI47116.1| LIM homeobox 5 [synthetic construct]
Length = 402
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 79/163 (48%), Gaps = 34/163 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 5 CAGCERPILDRFLLNVL-DRAWHIKCVQCCECKTNLSEKC-------------------- 43
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK YCK D+ R FGTKC C D V +A++K++H+ CF C+
Sbjct: 44 ----------FSREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCM 93
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDHEGMDKSSNGENNNNNTN 168
VC KQL G+E + + E+ CKDD+ + SS E + N+ +
Sbjct: 94 VCNKQLSTGEELYVIDENKFVCKDDY--LSSSSLKEGSLNSVS 134
>gi|195580083|ref|XP_002079885.1| GD21780 [Drosophila simulans]
gi|194191894|gb|EDX05470.1| GD21780 [Drosophila simulans]
Length = 438
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 91/193 (47%), Gaps = 42/193 (21%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ C GC I D++IL+V + WHA CL+C+ECH L++ CF R+G
Sbjct: 39 IPKCGGCHELILDRFILKVL-ERTWHAKCLQCSECHGQLNDK--CFARNG---------- 85
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
+ +CK D+ + +GTKC C++ V RA++ +YH+QCF
Sbjct: 86 ------------------QLFCKEDFFKRYGTKCSACDMGIPPTQVVRRAQDNVYHLQCF 127
Query: 124 CCVVCGKQLVPGDEFALRED-GLFCKDDHEG-------MDKSSNGENNNN---NTNINNN 172
C +C + L GDEF L ED L CK D+E +D S +G+ N T
Sbjct: 128 LCAMCSRTLNTGDEFYLMEDRKLICKRDYEEAKAKGLYLDGSLDGDQPNKRPRTTITAKQ 187
Query: 173 LHNLNNEGSNSGK 185
L L +NS K
Sbjct: 188 LETLKTAYNNSPK 200
>gi|426247330|ref|XP_004017439.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx5 [Ovis
aries]
Length = 386
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 79/163 (48%), Gaps = 34/163 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 5 CAGCERPILDRFLLNVL-DRAWHIKCVQCCECKTNLSEKC-------------------- 43
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK YCK D+ R FGTKC C D V +A++K++H+ CF C+
Sbjct: 44 ----------FSREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCM 93
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDHEGMDKSSNGENNNNNTN 168
VC KQL G+E + + E+ CKDD+ + SS E + N+ +
Sbjct: 94 VCNKQLSTGEELYVIDENKFVCKDDY--LSSSSLKEGSLNSVS 134
>gi|355786560|gb|EHH66743.1| hypothetical protein EGM_03791, partial [Macaca fascicularis]
Length = 306
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 79/163 (48%), Gaps = 34/163 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 5 CAGCERPILDRFLLNVL-DRAWHIKCVQCCECKTNLSEKC-------------------- 43
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK YCK D+ R FGTKC C D V +A++K++H+ CF C+
Sbjct: 44 ----------FSREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCM 93
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDHEGMDKSSNGENNNNNTN 168
VC KQL G+E + + E+ CKDD+ + SS E + N+ +
Sbjct: 94 VCNKQLSTGEELYVIDENKFVCKDDY--LSSSSLKEGSLNSVS 134
>gi|195164566|ref|XP_002023117.1| GL21131 [Drosophila persimilis]
gi|194105202|gb|EDW27245.1| GL21131 [Drosophila persimilis]
Length = 490
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 91/193 (47%), Gaps = 42/193 (21%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ C GC I D++IL+V + WHA CL+C+ECH L N CF R+G+ +CK D+
Sbjct: 95 IPKCGGCHELILDRFILKVL-ERTWHAKCLQCSECHGQL--NDKCFARNGQLFCKEDF-- 149
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F R +GTKC C++ V RA++ +YH+QCF
Sbjct: 150 -------------FKR-------------YGTKCSACDMGIPPTQVVRRAQDHVYHLQCF 183
Query: 124 CCVVCGKQLVPGDEFALRED-GLFCKDDHEG-------MDKSSNGENNNN---NTNINNN 172
C +C + L GDEF L ED L CK D+E +D S +G+ N T
Sbjct: 184 LCAMCSRTLNTGDEFYLMEDRKLICKRDYEEAKAKGLYLDGSLDGDQPNKRPRTTITAKQ 243
Query: 173 LHNLNNEGSNSGK 185
L L +NS K
Sbjct: 244 LETLKTAYNNSPK 256
>gi|109098848|ref|XP_001111705.1| PREDICTED: LIM/homeobox protein Lhx5-like [Macaca mulatta]
gi|296213013|ref|XP_002753087.1| PREDICTED: LIM/homeobox protein Lhx5 [Callithrix jacchus]
gi|297693055|ref|XP_002823842.1| PREDICTED: LIM/homeobox protein Lhx5 [Pongo abelii]
gi|402887767|ref|XP_003907254.1| PREDICTED: LIM/homeobox protein Lhx5 [Papio anubis]
Length = 402
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 79/163 (48%), Gaps = 34/163 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 5 CAGCERPILDRFLLNVL-DRAWHIKCVQCCECKTNLSEKC-------------------- 43
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK YCK D+ R FGTKC C D V +A++K++H+ CF C+
Sbjct: 44 ----------FSREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCM 93
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDHEGMDKSSNGENNNNNTN 168
VC KQL G+E + + E+ CKDD+ + SS E + N+ +
Sbjct: 94 VCNKQLSTGEELYVIDENKFVCKDDY--LSSSSLKEGSLNSVS 134
>gi|410921222|ref|XP_003974082.1| PREDICTED: LIM/homeobox protein Lhx8-like [Takifugu rubripes]
Length = 324
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 76/150 (50%), Gaps = 29/150 (19%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C CG +I D+Y+L+V DL WH CL C+ CH L + +C++++ + +
Sbjct: 53 AVCANCGEEIVDKYLLKVN-DLCWHVRCLSCSVCHTSLGSHTSCYIKEKEVF-------- 103
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
CK DY R +GT C C N D+V RAK +YH+ CF
Sbjct: 104 --------------------CKMDYFRRYGTWCACCGRNIHSTDWVRRAKGNVYHLACFA 143
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
C C +QL G+EFAL E+ + C+ ++ M
Sbjct: 144 CFSCKRQLSTGEEFALVEEKVLCRVHYDCM 173
>gi|403281850|ref|XP_003932386.1| PREDICTED: LIM/homeobox protein Lhx5 [Saimiri boliviensis
boliviensis]
Length = 385
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 71/146 (48%), Gaps = 32/146 (21%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 5 CAGCERPILDRFLLNVL-DRAWHIKCVQCCECKTNLSEKC-------------------- 43
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK YCK D+ R FGTKC C D V +A++K++H+ CF C+
Sbjct: 44 ----------FSREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCM 93
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDH 151
VC KQL G+E + + E+ CKDD+
Sbjct: 94 VCNKQLSTGEELYVIDENKFVCKDDY 119
>gi|348505324|ref|XP_003440211.1| PREDICTED: LIM domain transcription factor LMO4.1-like [Oreochromis
niloticus]
Length = 198
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 77/168 (45%), Gaps = 35/168 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCGG+I D+++L + + WH CL+C+ CH L E +
Sbjct: 25 CAGCGGRIADRFLL-FSMERYWHTRCLKCSCCHAQLGEYSS------------------- 64
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFG--TKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
TC+ + G CK DY+RLFG C C + + VMRA+ +YH++CF
Sbjct: 65 --------TCYSKGGMILCKNDYIRLFGHSGACSACGQSIPASEMVMRAQGSVYHLKCFT 116
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNNTNINNN 172
C C +LVPGD F +FC+ D G G ++T + N
Sbjct: 117 CATCRNRLVPGDRFHYVNGTIFCEHDRPG-----GGLLGGHSTPLQGN 159
>gi|431914229|gb|ELK15487.1| LIM/homeobox protein Lhx5 [Pteropus alecto]
Length = 402
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 79/163 (48%), Gaps = 34/163 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 5 CAGCERPILDRFLLNVL-DRAWHIKCVQCCECKTNLSEKC-------------------- 43
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK YCK D+ R FGTKC C D V +A++K++H+ CF C+
Sbjct: 44 ----------FSREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCM 93
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDHEGMDKSSNGENNNNNTN 168
VC KQL G+E + + E+ CKDD+ + SS E + N+ +
Sbjct: 94 VCNKQLSTGEELYVIDENKFVCKDDY--LSSSSLKEGSLNSVS 134
>gi|395833990|ref|XP_003790000.1| PREDICTED: LIM/homeobox protein Lhx5 [Otolemur garnettii]
Length = 402
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 79/163 (48%), Gaps = 34/163 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 5 CAGCERPILDRFLLNVL-DRAWHIKCVQCCECKTNLSEKC-------------------- 43
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK YCK D+ R FGTKC C D V +A++K++H+ CF C+
Sbjct: 44 ----------FSREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCM 93
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDHEGMDKSSNGENNNNNTN 168
VC KQL G+E + + E+ CKDD+ + SS E + N+ +
Sbjct: 94 VCNKQLSTGEELYVIDENKFVCKDDY--LSSSSLKEGSLNSVS 134
>gi|281343471|gb|EFB19055.1| hypothetical protein PANDA_014809 [Ailuropoda melanoleuca]
Length = 354
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 79/163 (48%), Gaps = 34/163 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 5 CAGCERPILDRFLLNVL-DRAWHIKCVQCCECKTNLSEKC-------------------- 43
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK YCK D+ R FGTKC C D V +A++K++H+ CF C+
Sbjct: 44 ----------FSREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCM 93
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDHEGMDKSSNGENNNNNTN 168
VC KQL G+E + + E+ CKDD+ + SS E + N+ +
Sbjct: 94 VCNKQLSTGEELYVIDENKFVCKDDY--LSSSSLKEGSLNSVS 134
>gi|195164562|ref|XP_002023115.1| GL21181 [Drosophila persimilis]
gi|194105200|gb|EDW27243.1| GL21181 [Drosophila persimilis]
Length = 436
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 89/189 (47%), Gaps = 38/189 (20%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ C GC I D++IL+V + WHA CL+C+ECH L++ CF R+G
Sbjct: 45 IPKCGGCHELILDRFILKVL-ERTWHAKCLQCSECHGQLNDK--CFARNG---------- 91
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
+ +CK D+ + +GTKC C++ V RA++ +YH+QCF
Sbjct: 92 ------------------QLFCKEDFFKRYGTKCSACDMGIPPTQVVRRAQDHVYHLQCF 133
Query: 124 CCVVCGKQLVPGDEFALRED-GLFCKDDHE-----GMDKSSNGENNNNNTNIN-NNLHNL 176
C +C + L GDEF L ED L CK D+E G+ + N T I L L
Sbjct: 134 LCAMCSRTLNTGDEFYLMEDRKLICKRDYEEAKAKGLYLDGDQPNKRPRTTITAKQLETL 193
Query: 177 NNEGSNSGK 185
+NS K
Sbjct: 194 KTAYNNSPK 202
>gi|410976694|ref|XP_003994749.1| PREDICTED: LIM/homeobox protein Lhx5 [Felis catus]
Length = 332
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 78/163 (47%), Gaps = 34/163 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 5 CAGCERPILDRFLLNVL-DRAWHIKCVQCCECKTNLSEKC-------------------- 43
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK YCK D+ R FGTKC C D V +A+ K++H+ CF C+
Sbjct: 44 ----------FSREGKLYCKNDFFRRFGTKCAGCGQGISPSDLVRKARGKVFHLNCFTCM 93
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDHEGMDKSSNGENNNNNTN 168
VC KQL G+E + + E+ CKDD+ + SS E + N+ +
Sbjct: 94 VCNKQLSTGEELYVIDENKFVCKDDY--LSSSSLKEGSLNSVS 134
>gi|344295258|ref|XP_003419329.1| PREDICTED: LIM/homeobox protein Lhx5-like [Loxodonta africana]
Length = 402
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 79/163 (48%), Gaps = 34/163 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 5 CAGCERPILDRFLLNVL-DRAWHIKCVQCCECKTNLSEKC-------------------- 43
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK YCK D+ R FGTKC C D V +A++K++H+ CF C+
Sbjct: 44 ----------FSREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCM 93
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDHEGMDKSSNGENNNNNTN 168
VC KQL G+E + + E+ CKDD+ + SS E + N+ +
Sbjct: 94 VCNKQLSTGEELYVIDENKFVCKDDY--LSSSSLKEGSLNSVS 134
>gi|311270693|ref|XP_003132949.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx5-like [Sus
scrofa]
Length = 402
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 79/163 (48%), Gaps = 34/163 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 5 CAGCERPILDRFLLNVL-DRAWHIKCVQCCECXTNLSEKC-------------------- 43
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK YCK D+ R FGTKC C D V +A++K++H+ CF C+
Sbjct: 44 ----------FSREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCM 93
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDHEGMDKSSNGENNNNNTN 168
VC KQL G+E + + E+ CKDD+ + SS E + N+ +
Sbjct: 94 VCNKQLSTGEELYVIDENKFVCKDDY--LSSSSLKEGSLNSVS 134
>gi|195161060|ref|XP_002021388.1| GL25299 [Drosophila persimilis]
gi|198465223|ref|XP_001353549.2| GA10520 [Drosophila pseudoobscura pseudoobscura]
gi|194118501|gb|EDW40544.1| GL25299 [Drosophila persimilis]
gi|198150064|gb|EAL31062.2| GA10520 [Drosophila pseudoobscura pseudoobscura]
Length = 275
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 71/148 (47%), Gaps = 29/148 (19%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K L C CG I D++ L V WHA CLRC C C
Sbjct: 2 KTELRSCAACGEPISDRFFLEVG-GCSWHAHCLRC----------CMCMCP--------- 41
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
LD +CF+R+ + YCK DY + FG KC KC D+V RA++ ++H+
Sbjct: 42 ---------LDRQQSCFIRERQVYCKADYSKNFGAKCSKCCRGISASDWVRRARDLVFHL 92
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCK 148
CF C CG+QL G++FAL +D + CK
Sbjct: 93 ACFACDQCGRQLSTGEQFALMDDRVLCK 120
>gi|156120769|ref|NP_001095531.1| LIM/homeobox protein Lhx5 [Bos taurus]
gi|151557071|gb|AAI50044.1| LHX5 protein [Bos taurus]
gi|296478515|tpg|DAA20630.1| TPA: LIM homeobox protein 5 [Bos taurus]
Length = 402
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 71/146 (48%), Gaps = 32/146 (21%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 5 CAGCERPILDRFLLNVL-DRAWHIKCVQCCECKTNLSEKC-------------------- 43
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK YCK D+ R FGTKC C D V +A++K++H+ CF C+
Sbjct: 44 ----------FSREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCM 93
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDH 151
VC KQL G+E + + E+ CKDD+
Sbjct: 94 VCNKQLSTGEELYVIDENKFVCKDDY 119
>gi|148237976|ref|NP_001079958.1| LIM homeobox 8 [Xenopus laevis]
gi|34784686|gb|AAH57730.1| MGC68912 protein [Xenopus laevis]
Length = 282
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 30/169 (17%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V DL WH CL C+ C L + +C+++D
Sbjct: 92 VCNNCGMEIVDKYLLKVN-DLCWHVRCLSCSVCRTSLGRHTSCYIKDKDI---------- 140
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
YCK DY R +GT+C +C + D+V RAK +YH+ CF C
Sbjct: 141 ------------------YCKLDYFRRYGTRCSRCGRHIHATDWVRRAKGNVYHLACFAC 182
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGM-DKSSNGENNNNNTNINNNL 173
C +QL G+EFAL E+ + C+ ++ M D N N ++ L
Sbjct: 183 YSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNLKRAVENGNRVSVEGAL 231
>gi|194749355|ref|XP_001957104.1| GF24228 [Drosophila ananassae]
gi|190624386|gb|EDV39910.1| GF24228 [Drosophila ananassae]
Length = 275
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 71/148 (47%), Gaps = 29/148 (19%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K L C CG I D++ L V WHA CLRC C C
Sbjct: 2 KTELRSCAACGEPISDRFFLEVG-GCSWHAHCLRC----------CMCMCP--------- 41
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
LD +CF+R+ + YCK DY + FG KC KC D+V RA++ ++H+
Sbjct: 42 ---------LDRQQSCFIRERQVYCKADYSKNFGAKCSKCCRGISASDWVRRARDLVFHL 92
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCK 148
CF C CG+QL G++FAL +D + CK
Sbjct: 93 ACFACDQCGRQLSTGEQFALMDDRVLCK 120
>gi|442628307|ref|NP_001260559.1| Lim3, isoform G [Drosophila melanogaster]
gi|440213916|gb|AGB93094.1| Lim3, isoform G [Drosophila melanogaster]
Length = 555
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 90/193 (46%), Gaps = 42/193 (21%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ C GC I D++IL+V + WHA CL+C+ECH L N CF R+G
Sbjct: 119 IPKCGGCHELILDRFILKVL-ERTWHAKCLQCSECHGQL--NDKCFARNG---------- 165
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
+ +CK D+ + +GTKC C++ V RA++ +YH+QCF
Sbjct: 166 ------------------QLFCKEDFFKRYGTKCSACDMGIPPTQVVRRAQDNVYHLQCF 207
Query: 124 CCVVCGKQLVPGDEFALRED-GLFCKDDHEG-------MDKSSNGENNNN---NTNINNN 172
C +C + L GDEF L ED L CK D+E +D S +G+ N T
Sbjct: 208 LCAMCSRTLNTGDEFYLMEDRKLICKRDYEEAKAKGLYLDGSLDGDQPNKRPRTTITAKQ 267
Query: 173 LHNLNNEGSNSGK 185
L L +NS K
Sbjct: 268 LETLKTAYNNSPK 280
>gi|355763645|gb|EHH62200.1| LIM/homeobox protein LMX1B [Macaca fascicularis]
Length = 379
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 82/172 (47%), Gaps = 36/172 (20%)
Query: 17 QYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTC 76
++++RV + WH CL+CA C Q L +C
Sbjct: 47 RFLMRVN-ESSWHEECLQCAACQQAL------------------------------TTSC 75
Query: 77 FVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGD 136
+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFCC VC +QL GD
Sbjct: 76 YFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGD 135
Query: 137 EFALREDGLFCKDDHEG----MDKSSNGENNN-NNTNINNNLHNLNNEGSNS 183
EF L+E L CK D+E + S E+++ + + + ++ +GS S
Sbjct: 136 EFVLKEGQLLCKGDYEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQS 187
>gi|440898273|gb|ELR49802.1| LIM/homeobox protein Lhx5, partial [Bos grunniens mutus]
Length = 376
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 79/163 (48%), Gaps = 34/163 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 5 CAGCERPILDRFLLNVL-DRAWHIKCVQCCECKTNLSEKC-------------------- 43
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK YCK D+ R FGTKC C D V +A++K++H+ CF C+
Sbjct: 44 ----------FSREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCM 93
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDHEGMDKSSNGENNNNNTN 168
VC KQL G+E + + E+ CKDD+ + SS E + N+ +
Sbjct: 94 VCNKQLSTGEELYVIDENKFVCKDDY--LSSSSLKEGSLNSVS 134
>gi|297662848|ref|XP_002809900.1| PREDICTED: LOW QUALITY PROTEIN: LIM homeobox transcription factor
1-alpha [Pongo abelii]
Length = 489
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 70/145 (48%), Gaps = 31/145 (21%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S+C GC I D+++LR+ D WH C++CA C + L+
Sbjct: 33 SVCEGCQRVILDRFLLRLN-DSFWHEQCVQCASCKEPLE--------------------- 70
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
TCF RD K YCK DY +LF KC C +FVMRA+ +YH+ CFC
Sbjct: 71 ---------TTCFYRDKKLYCKYDYEKLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFC 121
Query: 125 CVVCGKQLVPGDEFALREDGLFCKD 149
C VC +QL GDEF L+ +D
Sbjct: 122 CCVCERQLQXGDEFVLKRAAALQRD 146
>gi|386769869|ref|NP_001246087.1| Lim3, isoform E [Drosophila melanogaster]
gi|383291572|gb|AFH03761.1| Lim3, isoform E [Drosophila melanogaster]
Length = 405
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 91/193 (47%), Gaps = 42/193 (21%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ C GC I D++IL+V + WHA CL+C+ECH L++ CF R+G
Sbjct: 4 IPKCGGCHELILDRFILKVL-ERTWHAKCLQCSECHGQLNDK--CFARNG---------- 50
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
+ +CK D+ + +GTKC C++ V RA++ +YH+QCF
Sbjct: 51 ------------------QLFCKEDFFKRYGTKCSACDMGIPPTQVVRRAQDNVYHLQCF 92
Query: 124 CCVVCGKQLVPGDEFALRED-GLFCKDDHEG-------MDKSSNGENNNN---NTNINNN 172
C +C + L GDEF L ED L CK D+E +D S +G+ N T
Sbjct: 93 LCAMCSRTLNTGDEFYLMEDRKLICKRDYEEAKAKGLYLDGSLDGDQPNKRPRTTITAKQ 152
Query: 173 LHNLNNEGSNSGK 185
L L +NS K
Sbjct: 153 LETLKTAYNNSPK 165
>gi|345790894|ref|XP_543409.3| PREDICTED: LIM/homeobox protein Lhx5 [Canis lupus familiaris]
Length = 402
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 79/163 (48%), Gaps = 34/163 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 5 CAGCERPILDRFLLNVL-DRAWHIKCVQCCECKTNLSEKC-------------------- 43
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK YCK D+ R FGTKC C D V +A++K++H+ CF C+
Sbjct: 44 ----------FSREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCM 93
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDHEGMDKSSNGENNNNNTN 168
VC KQL G+E + + E+ CKDD+ + SS E + N+ +
Sbjct: 94 VCNKQLSTGEELYVIDENKFVCKDDY--LSSSSLKEGSLNSVS 134
>gi|195484367|ref|XP_002090664.1| GE12672 [Drosophila yakuba]
gi|194176765|gb|EDW90376.1| GE12672 [Drosophila yakuba]
Length = 442
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 91/193 (47%), Gaps = 42/193 (21%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ C GC I D++IL+V + WHA CL+C+ECH L++ CF R+G
Sbjct: 39 IPKCGGCHELILDRFILKVL-ERTWHAKCLQCSECHGQLNDK--CFARNG---------- 85
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
+ +CK D+ + +GTKC C++ V RA++ +YH+QCF
Sbjct: 86 ------------------QLFCKEDFFKRYGTKCSACDMGIPPTQVVRRAQDNVYHLQCF 127
Query: 124 CCVVCGKQLVPGDEFALRED-GLFCKDDHEG-------MDKSSNGENNNN---NTNINNN 172
C +C + L GDEF L ED L CK D+E +D S +G+ N T
Sbjct: 128 LCAMCSRTLNTGDEFYLMEDRKLICKRDYEEAKAKGLYLDGSLDGDQPNKRPRTTITAKQ 187
Query: 173 LHNLNNEGSNSGK 185
L L +NS K
Sbjct: 188 LETLKTAYNNSPK 200
>gi|94957756|ref|NP_001035556.1| LIM/homeobox protein Lhx8 [Gallus gallus]
gi|71800649|gb|AAZ41374.1| LIM homeodomain protein [Gallus gallus]
Length = 347
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 79/161 (49%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V DL WH CL C+ C
Sbjct: 65 VCSSCGLEIVDKYLLKVN-DLCWHVRCLSCSVC--------------------------- 96
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C+++D +CK DY R +GT+C +C + D+V RAK +YH+ CF C
Sbjct: 97 -RTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFAC 155
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EFAL E+ + C+ ++ M + E N N
Sbjct: 156 FSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNLKREVENGN 196
>gi|6678690|ref|NP_032525.1| LIM/homeobox protein Lhx5 [Mus musculus]
gi|20514764|ref|NP_620605.1| LIM/homeobox protein Lhx5 [Rattus norvegicus]
gi|47606426|sp|P61376.1|LHX5_RAT RecName: Full=LIM/homeobox protein Lhx5; Short=LIM homeobox protein
5; AltName: Full=Homeobox protein LIM-2
gi|47606427|sp|P61375.1|LHX5_MOUSE RecName: Full=LIM/homeobox protein Lhx5; Short=LIM homeobox protein
5
gi|531220|gb|AAA62162.1| amino acid feature: homeodomain, bp 895 .. 1074; amino acid
feature: LIM1, bp 373 .. 516; amino acid feature: LIM2,
bp 550 .. 705 [Rattus norvegicus]
gi|1388183|gb|AAC52842.1| LIM/homeodomain [Mus musculus]
gi|26329557|dbj|BAC28517.1| unnamed protein product [Mus musculus]
gi|26339568|dbj|BAC33455.1| unnamed protein product [Mus musculus]
gi|34784227|gb|AAH57585.1| LIM homeobox protein 5 [Mus musculus]
gi|74148661|dbj|BAE24281.1| unnamed protein product [Mus musculus]
gi|148687827|gb|EDL19774.1| LIM homeobox protein 5 [Mus musculus]
gi|149063463|gb|EDM13786.1| LIM homeobox protein 5 [Rattus norvegicus]
Length = 402
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 79/163 (48%), Gaps = 34/163 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 5 CAGCERPILDRFLLNVL-DRAWHIKCVQCCECKTNLSEKC-------------------- 43
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK YCK D+ R FGTKC C D V +A++K++H+ CF C+
Sbjct: 44 ----------FSREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCM 93
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDHEGMDKSSNGENNNNNTN 168
VC KQL G+E + + E+ CKDD+ + SS E + N+ +
Sbjct: 94 VCNKQLSTGEELYVIDENKFVCKDDY--LSSSSLKEGSLNSVS 134
>gi|224058535|ref|XP_002189228.1| PREDICTED: LIM/homeobox protein Lhx8 [Taeniopygia guttata]
Length = 347
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 79/161 (49%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V DL WH CL C+ C
Sbjct: 65 VCSSCGLEIVDKYLLKVN-DLCWHVRCLSCSVC--------------------------- 96
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C+++D +CK DY R +GT+C +C + D+V RAK +YH+ CF C
Sbjct: 97 -RTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFAC 155
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EFAL E+ + C+ ++ M + E N N
Sbjct: 156 FSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNLKREVENGN 196
>gi|198473411|ref|XP_001356286.2| GA10505 [Drosophila pseudoobscura pseudoobscura]
gi|198139444|gb|EAL33349.2| GA10505 [Drosophila pseudoobscura pseudoobscura]
Length = 491
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 91/193 (47%), Gaps = 42/193 (21%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ C GC I D++IL+V + WHA CL+C+ECH L++ CF R+G
Sbjct: 96 IPKCGGCHELILDRFILKVL-ERTWHAKCLQCSECHGQLNDK--CFARNG---------- 142
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
+ +CK D+ + +GTKC C++ V RA++ +YH+QCF
Sbjct: 143 ------------------QLFCKEDFFKRYGTKCSACDMGIPPTQVVRRAQDHVYHLQCF 184
Query: 124 CCVVCGKQLVPGDEFALRED-GLFCKDDHEG-------MDKSSNGENNNN---NTNINNN 172
C +C + L GDEF L ED L CK D+E +D S +G+ N T
Sbjct: 185 LCAMCSRTLNTGDEFYLMEDRKLICKRDYEEAKAKGLYLDGSLDGDQPNKRPRTTITAKQ 244
Query: 173 LHNLNNEGSNSGK 185
L L +NS K
Sbjct: 245 LETLKTAYNNSPK 257
>gi|170034024|ref|XP_001844875.1| arrowhead [Culex quinquefasciatus]
gi|167875283|gb|EDS38666.1| arrowhead [Culex quinquefasciatus]
Length = 257
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 74/148 (50%), Gaps = 29/148 (19%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K C GC QI D+YI V+ WH ACLRC+ C YC
Sbjct: 2 KTEFKSCGGCSEQITDRYIFEVS-GCAWHGACLRCSVC-----------------YCP-- 41
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
L+ +C+ +DG+ YCK DY++ + C KC+ + D+V RA++ ++H+
Sbjct: 42 ---------LERQVSCYFKDGEVYCKTDYIKKYKAACTKCSRSISPSDWVRRARDFVFHL 92
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCK 148
CF C C +QL G++FA+ +D + CK
Sbjct: 93 ACFSCDTCSRQLSTGEQFAIIDDRVLCK 120
>gi|354497499|ref|XP_003510857.1| PREDICTED: LIM/homeobox protein Lhx5-like [Cricetulus griseus]
gi|344257745|gb|EGW13849.1| LIM/homeobox protein Lhx5 [Cricetulus griseus]
Length = 402
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 79/163 (48%), Gaps = 34/163 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 5 CAGCERPILDRFLLNVL-DRAWHIKCVQCCECKTNLSEKC-------------------- 43
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK YCK D+ R FGTKC C D V +A++K++H+ CF C+
Sbjct: 44 ----------FSREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCM 93
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDHEGMDKSSNGENNNNNTN 168
VC KQL G+E + + E+ CKDD+ + SS E + N+ +
Sbjct: 94 VCNKQLSTGEELYVIDENKFVCKDDY--LSSSSLKEGSLNSVS 134
>gi|194759358|ref|XP_001961916.1| GF15212 [Drosophila ananassae]
gi|190615613|gb|EDV31137.1| GF15212 [Drosophila ananassae]
Length = 444
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 91/193 (47%), Gaps = 42/193 (21%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ C GC I D++IL+V + WHA CL+C+ECH L++ CF R+G
Sbjct: 39 IPKCGGCHELILDRFILKVL-ERTWHAKCLQCSECHGQLNDK--CFARNG---------- 85
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
+ +CK D+ + +GTKC C++ V RA++ +YH+QCF
Sbjct: 86 ------------------QLFCKEDFFKRYGTKCSACDMGIPPTQVVRRAQDNVYHLQCF 127
Query: 124 CCVVCGKQLVPGDEFALRED-GLFCKDDHEG-------MDKSSNGENNNN---NTNINNN 172
C +C + L GDEF L ED L CK D+E +D S +G+ N T
Sbjct: 128 LCAMCSRTLNTGDEFYLMEDRKLICKRDYEEAKAKGLYLDGSLDGDQPNKRPRTTITAKQ 187
Query: 173 LHNLNNEGSNSGK 185
L L +NS K
Sbjct: 188 LETLKTAYNNSPK 200
>gi|24585132|ref|NP_724161.1| Lim3, isoform B [Drosophila melanogaster]
gi|386769865|ref|NP_001246085.1| Lim3, isoform C [Drosophila melanogaster]
gi|386769867|ref|NP_001246086.1| Lim3, isoform D [Drosophila melanogaster]
gi|386769871|ref|NP_001246088.1| Lim3, isoform F [Drosophila melanogaster]
gi|22946804|gb|AAF53758.2| Lim3, isoform B [Drosophila melanogaster]
gi|124248338|gb|ABM92789.1| FI01025p [Drosophila melanogaster]
gi|383291570|gb|AFH03759.1| Lim3, isoform C [Drosophila melanogaster]
gi|383291571|gb|AFH03760.1| Lim3, isoform D [Drosophila melanogaster]
gi|383291573|gb|AFH03762.1| Lim3, isoform F [Drosophila melanogaster]
Length = 520
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 90/193 (46%), Gaps = 42/193 (21%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ C GC I D++IL+V + WHA CL+C+ECH L N CF R+G
Sbjct: 119 IPKCGGCHELILDRFILKVL-ERTWHAKCLQCSECHGQL--NDKCFARNG---------- 165
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
+ +CK D+ + +GTKC C++ V RA++ +YH+QCF
Sbjct: 166 ------------------QLFCKEDFFKRYGTKCSACDMGIPPTQVVRRAQDNVYHLQCF 207
Query: 124 CCVVCGKQLVPGDEFALRED-GLFCKDDHEG-------MDKSSNGENNNN---NTNINNN 172
C +C + L GDEF L ED L CK D+E +D S +G+ N T
Sbjct: 208 LCAMCSRTLNTGDEFYLMEDRKLICKRDYEEAKAKGLYLDGSLDGDQPNKRPRTTITAKQ 267
Query: 173 LHNLNNEGSNSGK 185
L L +NS K
Sbjct: 268 LETLKTAYNNSPK 280
>gi|225581041|gb|ACN94618.1| GA10505 [Drosophila miranda]
Length = 499
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 90/193 (46%), Gaps = 42/193 (21%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ C GC I D++IL+V + WHA CL+C+ECH L N CF R+G
Sbjct: 95 IPKCGGCHELILDRFILKVL-ERTWHAKCLQCSECHGQL--NDKCFARNG---------- 141
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
+ +CK D+ + +GTKC C++ V RA++ +YH+QCF
Sbjct: 142 ------------------QLFCKEDFFKRYGTKCSACDMGIPPTQVVRRAQDNVYHLQCF 183
Query: 124 CCVVCGKQLVPGDEFALRED-GLFCKDDHEG-------MDKSSNGENNNN---NTNINNN 172
C +C + L GDEF L ED L CK D+E +D S +G+ N T
Sbjct: 184 LCAMCSRTLNTGDEFYLMEDRKLICKRDYEEAKAKGLYLDGSLDGDQPNKRPRTTITAKQ 243
Query: 173 LHNLNNEGSNSGK 185
L L +NS K
Sbjct: 244 LETLKTAYNNSPK 256
>gi|297473064|ref|XP_002686347.1| PREDICTED: LIM/homeobox protein Lhx8 [Bos taurus]
gi|296489244|tpg|DAA31357.1| TPA: LIM domain family member (lim-4)-like [Bos taurus]
Length = 346
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 81/169 (47%), Gaps = 30/169 (17%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V DL WH CL C+ C
Sbjct: 64 VCSSCGLEIVDKYLLKVN-DLCWHVRCLSCSVC--------------------------- 95
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C+++D +CK DY R +GT+C +C + D+V RAK +YH+ CF C
Sbjct: 96 -RTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFAC 154
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGM-DKSSNGENNNNNTNINNNL 173
C +QL G+EFAL E+ + C+ ++ M D N N ++ L
Sbjct: 155 FSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNLKREVENGNGISVEGAL 203
>gi|195345019|ref|XP_002039073.1| GM17030 [Drosophila sechellia]
gi|194134203|gb|EDW55719.1| GM17030 [Drosophila sechellia]
Length = 523
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 90/193 (46%), Gaps = 42/193 (21%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ C GC I D++IL+V + WHA CL+C+ECH L N CF R+G
Sbjct: 124 IPKCGGCHELILDRFILKVL-ERTWHAKCLQCSECHGQL--NDKCFARNG---------- 170
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
+ +CK D+ + +GTKC C++ V RA++ +YH+QCF
Sbjct: 171 ------------------QLFCKEDFFKRYGTKCSACDMGIPPTQVVRRAQDNVYHLQCF 212
Query: 124 CCVVCGKQLVPGDEFALRED-GLFCKDDHEG-------MDKSSNGENNNN---NTNINNN 172
C +C + L GDEF L ED L CK D+E +D S +G+ N T
Sbjct: 213 LCAMCSRTLNTGDEFYLMEDRKLICKRDYEEAKAKGLYLDGSLDGDQPNKRPRTTITAKQ 272
Query: 173 LHNLNNEGSNSGK 185
L L +NS K
Sbjct: 273 LETLKTAYNNSPK 285
>gi|213514790|ref|NP_001133458.1| LIM domain transcription factor LMO4.1 [Salmo salar]
gi|209154084|gb|ACI33274.1| LIM domain transcription factor LMO4.1 [Salmo salar]
Length = 168
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 71/149 (47%), Gaps = 30/149 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCGG+I D+++L + + WH CL+C+ CH L E T
Sbjct: 25 CAGCGGRIADRFLL-FSMERYWHTRCLKCSCCHAQLGEIGT------------------- 64
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFG--TKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
TC+ + G CK DY+RLFG C C + + VMRA+ +YH++CF
Sbjct: 65 --------TCYSKGGMILCKNDYIRLFGHSGACSACGQSIPASEMVMRAQGNVYHLKCFT 116
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEG 153
C C +LVPGD F +FC+ D G
Sbjct: 117 CATCRNRLVPGDRFHYVNGTIFCEHDRPG 145
>gi|345321290|ref|XP_003430404.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 2 [Ornithorhynchus
anatinus]
Length = 347
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 79/161 (49%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V DL WH CL C+ C
Sbjct: 65 VCSSCGLEIVDKYLLKVN-DLCWHVRCLSCSVC--------------------------- 96
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C+++D +CK DY R +GT+C +C + D+V RAK +YH+ CF C
Sbjct: 97 -RTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFAC 155
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EFAL E+ + C+ ++ M + E N N
Sbjct: 156 FSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNLKREVENGN 196
>gi|291407015|ref|XP_002719805.1| PREDICTED: LIM homeobox protein 5 [Oryctolagus cuniculus]
Length = 402
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 78/163 (47%), Gaps = 34/163 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 5 CAGCERPILDRFLLNVL-DRAWHIKCVQCCECKTNLSEKC-------------------- 43
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK YCK D+ R FGTKC C D V +A+ K++H+ CF C+
Sbjct: 44 ----------FSREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARGKVFHLNCFTCM 93
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDHEGMDKSSNGENNNNNTN 168
VC KQL G+E + + E+ CKDD+ + SS E + N+ +
Sbjct: 94 VCNKQLSTGEELYVIDENKFVCKDDY--LSSSSLKEGSLNSVS 134
>gi|327276679|ref|XP_003223095.1| PREDICTED: LIM/homeobox protein Lhx8-like [Anolis carolinensis]
Length = 379
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 79/161 (49%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V DL WH CL C+ C
Sbjct: 97 VCSSCGLEIVDKYLLKVN-DLCWHVRCLSCSVC--------------------------- 128
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C+++D +CK DY R +GT+C +C + D+V RAK +YH+ CF C
Sbjct: 129 -RTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFAC 187
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EFAL E+ + C+ ++ M + E N N
Sbjct: 188 FSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNLKREVENGN 228
>gi|17945534|gb|AAL48819.1| RE24382p [Drosophila melanogaster]
Length = 275
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 70/148 (47%), Gaps = 29/148 (19%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K L C CG I D++ L V WHA CLRC C C
Sbjct: 2 KTELRSCAACGEPISDRFFLEVG-GCSWHAHCLRC----------CMCMCP--------- 41
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
LD +CF+R+ + YCK DY + FG KC KC D+V RA+ ++H+
Sbjct: 42 ---------LDRQQSCFIRERQVYCKADYSKNFGAKCSKCCRGISASDWVRRARELVFHL 92
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCK 148
CF C CG+QL G++FAL +D + CK
Sbjct: 93 ACFACDQCGRQLSTGEQFALMDDRVLCK 120
>gi|442630036|ref|NP_001261379.1| arrowhead, isoform C [Drosophila melanogaster]
gi|440215263|gb|AGB94074.1| arrowhead, isoform C [Drosophila melanogaster]
Length = 287
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 70/148 (47%), Gaps = 29/148 (19%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K L C CG I D++ L V WHA CLRC C C
Sbjct: 2 KTELRSCAACGEPISDRFFLEVG-GCSWHAHCLRC----------CMCMCP--------- 41
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
LD +CF+R+ + YCK DY + FG KC KC D+V RA+ ++H+
Sbjct: 42 ---------LDRQQSCFIRERQVYCKADYSKNFGAKCSKCCRGISASDWVRRARELVFHL 92
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCK 148
CF C CG+QL G++FAL +D + CK
Sbjct: 93 ACFACDQCGRQLSTGEQFALMDDRVLCK 120
>gi|45382269|ref|NP_990744.1| LIM/homeobox protein Lhx1 [Gallus gallus]
gi|1708826|sp|P53411.1|LHX1_CHICK RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein Lim-1
gi|531183|gb|AAA62173.1| amino acid feature: homeodomain, bp 674 .. 853; amino acid feature:
LIM2, bp 326 .. 481; amino acid feature: LIM1, bp 149
..292 [Gallus gallus]
Length = 406
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 81/170 (47%), Gaps = 42/170 (24%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 4 CAGCKRPILDRFLLNVL-DRAWHVKCVQCCECKCNLTEKC-------------------- 42
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK YCK D+ R FGTKC C D V RA++K++H+ CF C+
Sbjct: 43 ----------FSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCM 92
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDHEGMDKSSNGENNNNNTNINNNLHN 175
+C KQL G+E + + E+ CK+D+ NN+NT N+LH+
Sbjct: 93 MCNKQLSTGEELYIIDENKFVCKEDYL----------NNSNTAKENSLHS 132
>gi|431897053|gb|ELK06317.1| LIM domain transcription factor LMO4 [Pteropus alecto]
Length = 214
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 70/148 (47%), Gaps = 30/148 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCGG+I D+++L A D WH+ CL+C+ C +
Sbjct: 23 CAGCGGKIADRFLL-YAMDSYWHSRCLKCSCC---------------------------Q 54
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFC 124
Q D +C+ + G C+ DY+RLFG C C + + VMRA+ +YH++CF
Sbjct: 55 AQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFT 114
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C C +LVPGD F LFC+ D
Sbjct: 115 CSTCRNRLVPGDRFHYINGSLFCEHDRP 142
>gi|24656992|ref|NP_728906.1| arrowhead, isoform B [Drosophila melanogaster]
gi|194866170|ref|XP_001971791.1| GG15164 [Drosophila erecta]
gi|195491511|ref|XP_002093592.1| GE21383 [Drosophila yakuba]
gi|62510367|sp|Q8IRC7.1|AWH_DROME RecName: Full=LIM/homeobox protein Awh; AltName: Full=Protein
arrowhead
gi|23092944|gb|AAN11572.1| arrowhead, isoform B [Drosophila melanogaster]
gi|94400621|gb|ABF17921.1| FI01007p [Drosophila melanogaster]
gi|190653574|gb|EDV50817.1| GG15164 [Drosophila erecta]
gi|194179693|gb|EDW93304.1| GE21383 [Drosophila yakuba]
Length = 275
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 70/148 (47%), Gaps = 29/148 (19%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K L C CG I D++ L V WHA CLRC C C
Sbjct: 2 KTELRSCAACGEPISDRFFLEVG-GCSWHAHCLRC----------CMCMCP--------- 41
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
LD +CF+R+ + YCK DY + FG KC KC D+V RA+ ++H+
Sbjct: 42 ---------LDRQQSCFIRERQVYCKADYSKNFGAKCSKCCRGISASDWVRRARELVFHL 92
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCK 148
CF C CG+QL G++FAL +D + CK
Sbjct: 93 ACFACDQCGRQLSTGEQFALMDDRVLCK 120
>gi|195337236|ref|XP_002035235.1| GM14592 [Drosophila sechellia]
gi|194128328|gb|EDW50371.1| GM14592 [Drosophila sechellia]
Length = 275
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 70/148 (47%), Gaps = 29/148 (19%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K L C CG I D++ L V WHA CLRC C C
Sbjct: 2 KTELRSCAACGEPISDRFFLEVG-GCSWHAHCLRC----------CMCMCP--------- 41
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
LD +CF+R+ + YCK DY + FG KC KC D+V RA+ ++H+
Sbjct: 42 ---------LDRQQSCFIRERQVYCKADYSKNFGAKCSKCCRGISASDWVRRARELVFHL 92
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCK 148
CF C CG+QL G++FAL +D + CK
Sbjct: 93 ACFACDQCGRQLSTGEQFALMDDRVLCK 120
>gi|443701941|gb|ELU00131.1| hypothetical protein CAPTEDRAFT_168913 [Capitella teleta]
Length = 481
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 73/147 (49%), Gaps = 32/147 (21%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
LC GC I ++++L V D WHA C+ C +C L + C
Sbjct: 5 LCAGCDRPIIERFLLTVL-DRAWHAQCVLCVDCQAPLTDKC------------------- 44
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
F RDG+ YC++D+ R +GTKC C D V RA+NK++H++CF C
Sbjct: 45 -----------FSRDGRLYCRQDFYRRYGTKCGGCAEGISPNDLVRRARNKVFHLKCFTC 93
Query: 126 VVCGKQLVPGDE-FALREDGLFCKDDH 151
+VC KQL G+E + L E+ CK D+
Sbjct: 94 MVCRKQLSTGEELYVLDENKFICKSDY 120
>gi|440907910|gb|ELR57994.1| LIM/homeobox protein Lhx8 [Bos grunniens mutus]
Length = 375
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 81/169 (47%), Gaps = 30/169 (17%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V DL WH CL C+ C
Sbjct: 93 VCSSCGLEIVDKYLLKVN-DLCWHVRCLSCSVC--------------------------- 124
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C+++D +CK DY R +GT+C +C + D+V RAK +YH+ CF C
Sbjct: 125 -RTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFAC 183
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGM-DKSSNGENNNNNTNINNNL 173
C +QL G+EFAL E+ + C+ ++ M D N N ++ L
Sbjct: 184 FSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNLKREVENGNGISVEGAL 232
>gi|324540769|gb|ADY49599.1| Protein lin-11, partial [Ascaris suum]
Length = 141
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 78/149 (52%), Gaps = 32/149 (21%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+++C GC I D+Y+ V D WHA+C++CA+C + L E
Sbjct: 1 MAICGGCNTAILDRYVFHVL-DKTWHASCIQCADCKEPLTE------------------- 40
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
TCF RDG C++D+ R FGT+C CN+ R D V RA++K++HVQCF
Sbjct: 41 -----------TCFSRDGLILCRQDFSRRFGTRCAGCNVALDRNDLVRRARDKVFHVQCF 89
Query: 124 CCVVCGKQLVPGDE-FALREDGLFCKDDH 151
C VC K+L G++ + L + CK D+
Sbjct: 90 QCTVCQKKLDTGEQLYILNGNRFVCKHDY 118
>gi|339236177|ref|XP_003379643.1| LIM/homeobox protein Awh [Trichinella spiralis]
gi|316977684|gb|EFV60755.1| LIM/homeobox protein Awh [Trichinella spiralis]
Length = 902
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 29/156 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C GCG I+D+Y+L+V WH CLRC+ C
Sbjct: 622 ICSGCGNLIYDRYLLQVNQQF-WHVNCLRCSSC--------------------------- 653
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
LD+ +C++++ K +CK Y R F KC++CN + +V RA+ +YH+ CF C
Sbjct: 654 -TALLDKLPSCYLKEDKVFCKMCYQRQFSVKCDRCNQVIQSNHWVRRARQYVYHLACFAC 712
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGE 161
C +QL G+EFAL++ + CK + + + NG+
Sbjct: 713 DSCQRQLSTGEEFALQDSRVLCKQHYMELLEGDNGK 748
>gi|391342699|ref|XP_003745653.1| PREDICTED: LIM/homeobox protein Lhx1-like [Metaseiulus
occidentalis]
Length = 405
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 73/146 (50%), Gaps = 32/146 (21%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WHA C++C +C L E C
Sbjct: 6 CAGCERPILDRFLLHVL-DRSWHAKCVQCTDCRCSLIEKC-------------------- 44
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F RDGK YC+ D+ + FGTKC C D V RA++K++H++CF C+
Sbjct: 45 ----------FSRDGKLYCRSDFYKRFGTKCAGCGQGISPTDLVRRARSKVFHLKCFTCL 94
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDH 151
VC KQL G+E + L E+ CK+D+
Sbjct: 95 VCRKQLSTGEELYVLDENRFICKEDY 120
>gi|358411510|ref|XP_589896.5| PREDICTED: LIM/homeobox protein Lhx8 [Bos taurus]
Length = 443
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 81/169 (47%), Gaps = 30/169 (17%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V DL WH CL C+ C
Sbjct: 171 VCSSCGLEIVDKYLLKVN-DLCWHVRCLSCSVC--------------------------- 202
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C+++D +CK DY R +GT+C +C + D+V RAK +YH+ CF C
Sbjct: 203 -RTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFAC 261
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGM-DKSSNGENNNNNTNINNNL 173
C +QL G+EFAL E+ + C+ ++ M D N N ++ L
Sbjct: 262 FSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNLKREVENGNGISVEGAL 310
>gi|345321288|ref|XP_001521123.2| PREDICTED: LIM/homeobox protein Lhx8 isoform 1 [Ornithorhynchus
anatinus]
Length = 347
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 81/169 (47%), Gaps = 30/169 (17%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V DL WH CL C+ C
Sbjct: 65 VCSSCGLEIVDKYLLKVN-DLCWHVRCLSCSVC--------------------------- 96
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C+++D +CK DY R +GT+C +C + D+V RAK +YH+ CF C
Sbjct: 97 -RTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFAC 155
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGM-DKSSNGENNNNNTNINNNL 173
C +QL G+EFAL E+ + C+ ++ M D N N ++ L
Sbjct: 156 FSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNLKREVENGNGISVEGAL 204
>gi|442630038|ref|NP_001261380.1| arrowhead, isoform D [Drosophila melanogaster]
gi|440215264|gb|AGB94075.1| arrowhead, isoform D [Drosophila melanogaster]
Length = 271
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 70/148 (47%), Gaps = 29/148 (19%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K L C CG I D++ L V WHA CLRC C C
Sbjct: 2 KTELRSCAACGEPISDRFFLEVG-GCSWHAHCLRC----------CMCMCP--------- 41
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
LD +CF+R+ + YCK DY + FG KC KC D+V RA+ ++H+
Sbjct: 42 ---------LDRQQSCFIRERQVYCKADYSKNFGAKCSKCCRGISASDWVRRARELVFHL 92
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCK 148
CF C CG+QL G++FAL +D + CK
Sbjct: 93 ACFACDQCGRQLSTGEQFALMDDRVLCK 120
>gi|18858977|ref|NP_571293.1| LIM/homeobox protein Lhx5 [Danio rerio]
gi|1708830|sp|P52889.1|LHX5_DANRE RecName: Full=LIM/homeobox protein Lhx5; Short=LIM homeobox protein
5; AltName: Full=Homeobox protein LIM-5
gi|840664|gb|AAA99465.1| LIM class homeodomain protein [Danio rerio]
gi|68534671|gb|AAH98523.1| LIM homeobox 5 [Danio rerio]
Length = 399
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 83/163 (50%), Gaps = 34/163 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WHA C++C EC NC +EK
Sbjct: 5 CAGCERPILDRFLLNVL-DRAWHAKCVQCCEC------NCNL---------------TEK 42
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
CF RDGK YCK D+ R FGTKC C D V RA++K++H+ CF C+
Sbjct: 43 ---------CFSRDGKLYCKIDFFRRFGTKCAGCLQGISPSDLVRRARSKVFHLNCFTCM 93
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDHEGMDKSSNGENNNNNTN 168
VC KQL G+E + + E+ CK+D+ + S+ E N N+ +
Sbjct: 94 VCNKQLSTGEELYVIDENKFVCKEDY--LSASAIKEVNLNSVS 134
>gi|261490776|ref|NP_001159787.1| LIM/homeobox protein Lhx8 [Sus scrofa]
gi|238683613|gb|ACR54090.1| LIM homeobox 8 [Sus scrofa]
Length = 295
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 79/161 (49%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V DL WH CL C+ C
Sbjct: 13 VCNSCGLEIVDKYLLKVN-DLCWHVRCLSCSVC--------------------------- 44
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C+++D +CK DY R +GT+C +C + D+V RAK +YH+ CF C
Sbjct: 45 -RTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFAC 103
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EFAL E+ + C+ ++ M + E N N
Sbjct: 104 FSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNLKREVENGN 144
>gi|334321736|ref|XP_001364235.2| PREDICTED: LIM domain transcription factor LMO4-like [Monodelphis
domestica]
Length = 225
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 77/164 (46%), Gaps = 32/164 (19%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCGG+I D+++L A D WH+ CL+C+ C +
Sbjct: 23 CAGCGGKIADRFLL-YAMDSYWHSRCLKCSCC---------------------------Q 54
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFC 124
Q D +C+ + G C+ DY+RLFG C C + + VMRA+ +YH++CF
Sbjct: 55 AQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFT 114
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNNTN 168
C C +LVPGD F LFC +H+ NG N+ +N
Sbjct: 115 CSTCRNRLVPGDRFHYINGSLFC--EHDRPTALINGHLNSLQSN 156
>gi|348535371|ref|XP_003455174.1| PREDICTED: LIM/homeobox protein Lhx5-like [Oreochromis niloticus]
Length = 396
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 75/146 (51%), Gaps = 32/146 (21%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WHA C++C EC NC +EK
Sbjct: 5 CAGCERPILDRFLLNVL-DRAWHAKCVQCCEC------NCNL---------------TEK 42
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
CF RDGK YCK D+ R FGTKC C D V +A++K++H+ CF C+
Sbjct: 43 ---------CFSRDGKLYCKIDFFRRFGTKCAGCLQGISPNDLVRKARSKVFHLNCFTCM 93
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDH 151
VC KQL G+E + + E+ CKDD+
Sbjct: 94 VCNKQLSTGEELYVIDENKFVCKDDY 119
>gi|328708425|ref|XP_001944208.2| PREDICTED: LIM/homeobox protein Lhx3-like [Acyrthosiphon pisum]
Length = 375
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 76/158 (48%), Gaps = 32/158 (20%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ C GC I D++IL+V + WHA CL+C EC L + CF R
Sbjct: 42 IPKCGGCQELILDRFILKVL-ERTWHARCLKCNECGATLADK--CFAR------------ 86
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
+G +CK D+ + +GTKC C+L V RA++ +YH+QCF
Sbjct: 87 ----------------NGMLFCKDDFFKRYGTKCAGCDLGIPPTQIVRRAQDLVYHLQCF 130
Query: 124 CCVVCGKQLVPGDEFALRED-GLFCKDDHEGMDKSSNG 160
CV+CG+ L GDEF L ED L CK D+E G
Sbjct: 131 ACVMCGRTLNTGDEFYLMEDRKLVCKPDYEAAKTKEGG 168
>gi|351705454|gb|EHB08373.1| LIM domain transcription factor LMO4 [Heterocephalus glaber]
Length = 214
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 77/164 (46%), Gaps = 32/164 (19%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCGG+I D+++L A D WH+ CL+C+ C +
Sbjct: 54 CAGCGGKIADRFLL-YAMDSYWHSRCLKCSCC---------------------------Q 85
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFC 124
Q D +C+ + G C+ DY+RLFG C C + + VMRA+ +YH++CF
Sbjct: 86 AQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFT 145
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNNTN 168
C C +LVPGD F LFC +H+ NG N+ +N
Sbjct: 146 CSTCRNRLVPGDRFHYINGSLFC--EHDRPTALINGHLNSLQSN 187
>gi|307204532|gb|EFN83212.1| LIM homeobox transcription factor 1 beta [Harpegnathos saltator]
Length = 402
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 70/148 (47%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GCG I D+Y++RVA + +H CL C C L
Sbjct: 57 TICAGCGRTIADKYVMRVA-ERNYHEECLSCTACGAMLSH-------------------- 95
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+CF+RD K YC+ DY ++FG KC +C D VMR + ++HV+CF
Sbjct: 96 ----------SCFIRDLKLYCRSDYEKIFGVKCARCMEKISCSDLVMRVASLVFHVECFM 145
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C +CG+ L G F LR+ C+ D E
Sbjct: 146 CCMCGQPLPRGAHFILRQGQPICRRDFE 173
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 19 ILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV------SSEKNQFLDE 72
++RVA L +H C C C Q L +R G+ C+RD+ S + + LDE
Sbjct: 131 VMRVA-SLVFHVECFMCCMCGQPLPRGAHFILRQGQPICRRDFEHELYLNSPQDDDLLDE 189
Query: 73 NCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFK 105
N RDG+ KR L + + +F+
Sbjct: 190 NRP---RDGRRGPKRPRTILTSAQRRQFKASFE 219
>gi|426218775|ref|XP_004003612.1| PREDICTED: LIM/homeobox protein Lhx8 [Ovis aries]
Length = 442
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 81/169 (47%), Gaps = 30/169 (17%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V DL WH CL C+ C
Sbjct: 160 VCSSCGLEIVDKYLLKVN-DLCWHVRCLSCSVC--------------------------- 191
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C+++D +CK DY R +GT+C +C + D+V RAK +YH+ CF C
Sbjct: 192 -RTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFAC 250
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGM-DKSSNGENNNNNTNINNNL 173
C +QL G+EFAL E+ + C+ ++ M D N N ++ L
Sbjct: 251 FSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNLKREVENGNGISVEGAL 299
>gi|417396903|gb|JAA45485.1| Putative lim domain transcription factor lmo4 [Desmodus rotundus]
Length = 197
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 70/148 (47%), Gaps = 30/148 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCGG+I D+++L A D WH+ CL+C+ C +
Sbjct: 23 CAGCGGKIADRFLL-YAMDSYWHSRCLKCSCC---------------------------Q 54
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFC 124
Q D +C+ + G C+ DY+RLFG C C + + VMRA+ +YH++CF
Sbjct: 55 AQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFT 114
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C C +LVPGD F LFC+ D
Sbjct: 115 CSTCRNRLVPGDRFHYINGSLFCEHDRP 142
>gi|47215186|emb|CAG01452.1| unnamed protein product [Tetraodon nigroviridis]
Length = 272
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 81/170 (47%), Gaps = 30/170 (17%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C C +I D+Y+L+V DL WH CL C+ CH L + +C++++
Sbjct: 10 AVCASCSEEIVDKYLLKVN-DLCWHVRCLSCSVCHTSLSSHTSCYIKE------------ 56
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+ +CK DY R +GT C C N D+V RAK +YH+ CF
Sbjct: 57 ----------------KEVFCKLDYFRRYGTWCACCGRNIHSTDWVRRAKGNVYHLACFA 100
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEGM-DKSSNGENNNNNTNINNNL 173
C C +QL G+EFAL E+ + C+ ++ M D N+ N+ +
Sbjct: 101 CFSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNLKRAVEKGNSVNMEGAV 150
>gi|348586764|ref|XP_003479138.1| PREDICTED: LIM/homeobox protein Lhx8-like [Cavia porcellus]
Length = 485
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 81/169 (47%), Gaps = 30/169 (17%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V DL WH CL C+ C
Sbjct: 214 VCSSCGLEIVDKYLLKVN-DLCWHVRCLSCSVC--------------------------- 245
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C+++D +CK DY R +GT+C +C + D+V RAK +YH+ CF C
Sbjct: 246 -RTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFAC 304
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGM-DKSSNGENNNNNTNINNNL 173
C +QL G+EFAL E+ + C+ ++ M D N N ++ L
Sbjct: 305 FSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNLKREVENGNGISVEGAL 353
>gi|327277087|ref|XP_003223297.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Anolis
carolinensis]
Length = 381
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 71/147 (48%), Gaps = 31/147 (21%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C GC I D+++LRV + WH C++CA C Q L
Sbjct: 40 VCAGCNTPISDRFLLRVN-ERSWHEGCVKCAACLQPL----------------------- 75
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
+ TC+ R+ + YCK DY +LF TKC C +F+MR +YHV CF C
Sbjct: 76 -------SGTCYCRNRQLYCKHDYEKLFQTKCSGCLKAVAPSEFIMRVLENVYHVHCFSC 128
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHE 152
C ++L GDEF L+E L C+ D+E
Sbjct: 129 CECERRLQRGDEFVLKEGQLLCRSDYE 155
>gi|410903918|ref|XP_003965440.1| PREDICTED: LIM/homeobox protein Lhx5-like [Takifugu rubripes]
Length = 396
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 93/204 (45%), Gaps = 57/204 (27%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WHA C++C EC NC +EK
Sbjct: 5 CAGCERPILDRFLLNVL-DRAWHAKCVQCCEC------NCNL---------------TEK 42
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
CF RDGK YCK D+ R FGTKC C D V +A++K++H+ CF C+
Sbjct: 43 ---------CFSRDGKLYCKMDFFRRFGTKCAGCLQGISPSDLVRKARSKVFHLNCFTCM 93
Query: 127 VCGKQLVPGDE-FALREDGLFCKDD--HEGMDKSSN-----------------------G 160
VC KQL G+E + + E+ CK+D G K +N
Sbjct: 94 VCNKQLSTGEELYVIDENKFVCKEDFLSSGATKEANLNSVSSCTDRSLSPDLQDPTQDDI 153
Query: 161 ENNNNNTNINNNLHNLNNEGSNSG 184
+ +N+T+ + +N+ NE NSG
Sbjct: 154 KETDNSTSSDKETNNIENEEQNSG 177
>gi|242011465|ref|XP_002426470.1| LIM/homeobox protein Lhx3, putative [Pediculus humanus corporis]
gi|212510582|gb|EEB13732.1| LIM/homeobox protein Lhx3, putative [Pediculus humanus corporis]
Length = 394
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 88/182 (48%), Gaps = 33/182 (18%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
L C GC I D+++L V D WHA C+RC +C L + C
Sbjct: 30 LLACAGCDKPILDKFLLNVL-DRTWHAECVRCHDCRAALADKC----------------- 71
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F R+GK +C+ D+ R +GTKC C D V +A++K++H+ CF
Sbjct: 72 -------------FSREGKLFCRNDFFRRYGTKCGGCLQGISPSDLVRKARDKVFHLNCF 118
Query: 124 CCVVCGKQLVPGDEFALREDGLF-CKDDHEGMDKSSNGENNNNNTNINNNLHNLNNEGSN 182
C+VC KQL G+E + +D F CK+D+ K+S+G + + ++ N + + N
Sbjct: 119 TCMVCRKQLSTGEELYVLDDNKFICKEDYL-TGKTSSGSLDGDPETRDSQTENKSPDDGN 177
Query: 183 SG 184
SG
Sbjct: 178 SG 179
>gi|195441498|ref|XP_002068546.1| GK20529 [Drosophila willistoni]
gi|194164631|gb|EDW79532.1| GK20529 [Drosophila willistoni]
Length = 275
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 71/148 (47%), Gaps = 29/148 (19%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K L C CG I D++ L V WHA CLRC C C
Sbjct: 2 KTELRSCAACGEPISDRFFLEVG-GCSWHAHCLRC----------CMCMCP--------- 41
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
LD +C++R+ + YCK DY + FG KC KC D+V RA++ ++H+
Sbjct: 42 ---------LDRQQSCYIRERQVYCKADYSKNFGAKCSKCCRGISASDWVRRARDLVFHL 92
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCK 148
CF C CG+QL G++FAL +D + CK
Sbjct: 93 ACFACDQCGRQLSTGEQFALMDDRVLCK 120
>gi|348586684|ref|XP_003479098.1| PREDICTED: LIM domain transcription factor LMO4-like [Cavia
porcellus]
Length = 236
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 70/148 (47%), Gaps = 30/148 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCGG+I D+++L A D WH+ CL+C+ C +
Sbjct: 23 CAGCGGKIADRFLL-YAMDSYWHSRCLKCSCC---------------------------Q 54
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFC 124
Q D +C+ + G C+ DY+RLFG C C + + VMRA+ +YH++CF
Sbjct: 55 AQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFT 114
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C C +LVPGD F LFC+ D
Sbjct: 115 CSTCRNRLVPGDRFHYINGSLFCEHDRP 142
>gi|355745377|gb|EHH50002.1| hypothetical protein EGM_00758, partial [Macaca fascicularis]
Length = 320
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 79/161 (49%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V DL WH CL C+ C
Sbjct: 38 VCNSCGLEIVDKYLLKVN-DLCWHVRCLSCSVC--------------------------- 69
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C+++D +CK DY R +GT+C +C + D+V RAK +YH+ CF C
Sbjct: 70 -RTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFAC 128
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EFAL E+ + C+ ++ M + E N N
Sbjct: 129 FSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNLKREVENGN 169
>gi|395821904|ref|XP_003784270.1| PREDICTED: LIM/homeobox protein Lhx8 [Otolemur garnettii]
Length = 346
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 79/161 (49%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V DL WH CL C+ C
Sbjct: 64 VCNSCGLEIVDKYLLKVN-DLCWHVRCLSCSVC--------------------------- 95
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C+++D +CK DY R +GT+C +C + D+V RAK +YH+ CF C
Sbjct: 96 -RTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFAC 154
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EFAL E+ + C+ ++ M + E N N
Sbjct: 155 FSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNLKREVENGN 195
>gi|224994808|ref|NP_001139341.1| apterous a [Tribolium castaneum]
gi|224459212|gb|ACN43341.1| apterous a [Tribolium castaneum]
Length = 465
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 66/137 (48%), Gaps = 30/137 (21%)
Query: 13 QIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDE 72
+I D++ L+ D WHA+CL+C +C LD TCF RDG YC
Sbjct: 136 RITDRFYLQAV-DRRWHASCLQCCQCRNTLDGEITCFSRDGNIYC--------------- 179
Query: 73 NCTCFVRDGKTYCKRDYVRLFGTK-CEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQ 131
K+DY RLFG K C +C + VMRA++ ++HV CF C VC
Sbjct: 180 -------------KKDYYRLFGMKRCARCQATIISSELVMRARDLVFHVHCFSCAVCNSP 226
Query: 132 LVPGDEFALREDGLFCK 148
L GD F +R+ + C+
Sbjct: 227 LTKGDHFGMRDGAVLCR 243
>gi|444727546|gb|ELW68032.1| LIM/homeobox protein Lhx8 [Tupaia chinensis]
Length = 348
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 79/161 (49%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V DL WH CL C+ C
Sbjct: 66 VCNSCGLEIVDKYLLKVN-DLCWHVRCLSCSVC--------------------------- 97
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C+++D +CK DY R +GT+C +C + D+V RAK +YH+ CF C
Sbjct: 98 -RTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFAC 156
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EFAL E+ + C+ ++ M + E N N
Sbjct: 157 FSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNLKREVENGN 197
>gi|403257739|ref|XP_003921454.1| PREDICTED: LIM/homeobox protein Lhx8 [Saimiri boliviensis
boliviensis]
Length = 346
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 79/161 (49%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V DL WH CL C+ C
Sbjct: 64 VCNSCGLEIVDKYLLKVN-DLCWHVRCLSCSVC--------------------------- 95
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C+++D +CK DY R +GT+C +C + D+V RAK +YH+ CF C
Sbjct: 96 -RTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFAC 154
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EFAL E+ + C+ ++ M + E N N
Sbjct: 155 FSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNLKREVENGN 195
>gi|391327822|ref|XP_003738394.1| PREDICTED: LIM/homeobox protein Lhx3-like [Metaseiulus
occidentalis]
Length = 408
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 85/189 (44%), Gaps = 34/189 (17%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ C GCG I D++IL+V + WH+ CL+C++C L CF R G YCK D+
Sbjct: 51 IPKCAGCGDIILDRFILKVL-ERPWHSKCLKCSDCQAPLANK--CFARAGHLYCKDDF-- 105
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F R +GTKC C V RA+ +YH+ CF
Sbjct: 106 -------------FKR-------------YGTKCAGCEQGIPPTQVVRRAQENVYHLACF 139
Query: 124 CCVVCGKQLVPGDEFALREDG-LFCKDDHEGMDKSSNGENNNNNTNIN-NNLHNLNNEGS 181
C++C +QL GDEF L ED L CK D+E K+ G T I L L + +
Sbjct: 140 SCILCKRQLNTGDEFYLMEDNKLVCKADYEAA-KAREGSTKRPRTTITAKQLETLKSAYN 198
Query: 182 NSGKIQLYL 190
S K ++
Sbjct: 199 QSPKPARHV 207
>gi|432885359|ref|XP_004074682.1| PREDICTED: LIM/homeobox protein Lhx5-like [Oryzias latipes]
Length = 396
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 77/149 (51%), Gaps = 32/149 (21%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ LC GC I D+++L V D WHA C++C +C NC
Sbjct: 2 MVLCAGCERPILDRFLLNVL-DRAWHAKCVQCCDC------NCNL--------------- 39
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
+EK CF RDGK YCK D+ R FGTKC C D V +A++K++H+ CF
Sbjct: 40 TEK---------CFSRDGKLYCKMDFFRRFGTKCAGCLQGISPNDLVRKARSKVFHLNCF 90
Query: 124 CCVVCGKQLVPGDE-FALREDGLFCKDDH 151
C+VC KQL G+E + + E+ CK+D+
Sbjct: 91 TCMVCNKQLSTGEELYVIDENKFVCKEDY 119
>gi|355558146|gb|EHH14926.1| hypothetical protein EGK_00938, partial [Macaca mulatta]
gi|355745433|gb|EHH50058.1| hypothetical protein EGM_00823, partial [Macaca fascicularis]
Length = 165
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 70/148 (47%), Gaps = 30/148 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCGG+I D+++L A D WH+ CL+C+ C +
Sbjct: 23 CAGCGGKIADRFLL-YAMDSYWHSRCLKCSCC---------------------------Q 54
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFC 124
Q D +C+ + G C+ DY+RLFG C C + + VMRA+ +YH++CF
Sbjct: 55 AQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFT 114
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C C +LVPGD F LFC+ D
Sbjct: 115 CSTCRNRLVPGDRFHYINGSLFCEHDRP 142
>gi|281354377|gb|EFB29961.1| hypothetical protein PANDA_005098 [Ailuropoda melanoleuca]
Length = 351
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 81/169 (47%), Gaps = 30/169 (17%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V DL WH CL C+ C
Sbjct: 69 VCNSCGLEIVDKYLLKVN-DLCWHVRCLSCSVC--------------------------- 100
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C+++D +CK DY R +GT+C +C + D+V RAK +YH+ CF C
Sbjct: 101 -RTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFAC 159
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGM-DKSSNGENNNNNTNINNNL 173
C +QL G+EFAL E+ + C+ ++ M D N N ++ L
Sbjct: 160 FSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNLKREVENGNGISVEGAL 208
>gi|432107070|gb|ELK32502.1| LIM domain transcription factor LMO4 [Myotis davidii]
Length = 198
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 70/146 (47%), Gaps = 30/146 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCGG+I D+++L A D WH+ CL+C+ C +
Sbjct: 23 CAGCGGKIADRFLL-YAMDSYWHSRCLKCSCC---------------------------Q 54
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFC 124
Q D +C+ + G C+ DY+RLFG C C + + VMRA+ +YH++CF
Sbjct: 55 AQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFT 114
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDD 150
C C +LVPGD F LFC+ D
Sbjct: 115 CSTCRNRLVPGDRFHYINGSLFCEHD 140
>gi|440912098|gb|ELR61697.1| LIM domain transcription factor LMO4, partial [Bos grunniens mutus]
Length = 165
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 70/148 (47%), Gaps = 30/148 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCGG+I D+++L A D WH+ CL+C+ C +
Sbjct: 24 CAGCGGKIADRFLL-YAMDSYWHSRCLKCSCC---------------------------Q 55
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFC 124
Q D +C+ + G C+ DY+RLFG C C + + VMRA+ +YH++CF
Sbjct: 56 AQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFT 115
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C C +LVPGD F LFC+ D
Sbjct: 116 CSTCRNRLVPGDRFHYINGSLFCEHDRP 143
>gi|355699533|gb|AES01159.1| LIM domain only 4 [Mustela putorius furo]
Length = 163
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 70/148 (47%), Gaps = 30/148 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCGG+I D+++L A D WH+ CL+C+ C +
Sbjct: 22 CAGCGGKIADRFLL-YAMDSYWHSRCLKCSCC---------------------------Q 53
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFC 124
Q D +C+ + G C+ DY+RLFG C C + + VMRA+ +YH++CF
Sbjct: 54 AQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFT 113
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C C +LVPGD F LFC+ D
Sbjct: 114 CSTCRNRLVPGDRFHYINGSLFCEHDRP 141
>gi|158258593|dbj|BAF85267.1| unnamed protein product [Homo sapiens]
Length = 165
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 70/148 (47%), Gaps = 30/148 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCGG+I D+++L A D WH+ CL+C+ C +
Sbjct: 23 CAGCGGKIADRFLL-YAMDSYWHSRCLKCSCC---------------------------Q 54
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFC 124
Q D +C+ + G C+ DY+RLFG C C + + VMRA+ +YH++CF
Sbjct: 55 AQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFT 114
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C C +LVPGD F LFC+ D
Sbjct: 115 CSTCRNRLVPGDRFHYINGSLFCEHDRP 142
>gi|332222205|ref|XP_003260257.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 1 [Nomascus
leucogenys]
Length = 356
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 79/161 (49%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V DL WH CL C+ C
Sbjct: 74 VCNSCGLEIVDKYLLKVN-DLCWHVRCLSCSVC--------------------------- 105
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C+++D +CK DY R +GT+C +C + D+V RAK +YH+ CF C
Sbjct: 106 -RTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFAC 164
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EFAL E+ + C+ ++ M + E N N
Sbjct: 165 FSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNLKREVENGN 205
>gi|50083287|ref|NP_001001933.1| LIM/homeobox protein Lhx8 isoform 1 [Homo sapiens]
gi|114557210|ref|XP_524738.2| PREDICTED: LIM/homeobox protein Lhx8 isoform 2 [Pan troglodytes]
gi|297664648|ref|XP_002810744.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 1 [Pongo abelii]
gi|397521070|ref|XP_003830626.1| PREDICTED: LIM/homeobox protein Lhx8 [Pan paniscus]
gi|426330048|ref|XP_004026038.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 1 [Gorilla gorilla
gorilla]
gi|296434566|sp|Q68G74.2|LHX8_HUMAN RecName: Full=LIM/homeobox protein Lhx8; Short=LIM homeobox protein
8
Length = 356
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 79/161 (49%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V DL WH CL C+ C
Sbjct: 74 VCNSCGLEIVDKYLLKVN-DLCWHVRCLSCSVC--------------------------- 105
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C+++D +CK DY R +GT+C +C + D+V RAK +YH+ CF C
Sbjct: 106 -RTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFAC 164
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EFAL E+ + C+ ++ M + E N N
Sbjct: 165 FSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNLKREVENGN 205
>gi|363740116|ref|XP_001234553.2| PREDICTED: LIM/homeobox protein Lhx5 [Gallus gallus]
Length = 402
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 72/146 (49%), Gaps = 32/146 (21%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 5 CAGCERPILDRFLLNVL-DRAWHIKCVQCCECKCNLTEKC-------------------- 43
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK YCK D+ R FGTKC C+ D V +A+NK++H+ CF C+
Sbjct: 44 ----------FSREGKLYCKNDFFRRFGTKCAGCSQGISPSDLVRKARNKVFHLNCFTCM 93
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDH 151
VC KQL G+E + + E+ CK+D+
Sbjct: 94 VCNKQLSTGEELYIIDENKFVCKEDY 119
>gi|351694748|gb|EHA97666.1| LIM/homeobox protein Lhx5 [Heterocephalus glaber]
Length = 402
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 79/163 (48%), Gaps = 34/163 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 5 CAGCERPILDRFLLNVL-DRAWHIKCVQCCECKTNLSEKC-------------------- 43
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK YCK D+ R FGTKC C D V +A++K++H+ CF C+
Sbjct: 44 ----------FSREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCM 93
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDHEGMDKSSNGENNNNNTN 168
VC KQL G+E + + E+ CK+D+ + SS E + N+ +
Sbjct: 94 VCNKQLSTGEELYVIDENKFVCKEDY--LSSSSLKEGSLNSVS 134
>gi|344278994|ref|XP_003411276.1| PREDICTED: LIM/homeobox protein Lhx8 [Loxodonta africana]
Length = 346
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 79/161 (49%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V DL WH CL C+ C
Sbjct: 64 VCNSCGLEIVDKYLLKVN-DLCWHVRCLSCSVC--------------------------- 95
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C+++D +CK DY R +GT+C +C + D+V RAK +YH+ CF C
Sbjct: 96 -RTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFAC 154
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EFAL E+ + C+ ++ M + E N N
Sbjct: 155 FSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNLKREVENGN 195
>gi|410967547|ref|XP_003990280.1| PREDICTED: LIM/homeobox protein Lhx8 [Felis catus]
Length = 346
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 79/161 (49%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V DL WH CL C+ C
Sbjct: 64 VCNSCGLEIVDKYLLKVN-DLCWHVRCLSCSVC--------------------------- 95
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C+++D +CK DY R +GT+C +C + D+V RAK +YH+ CF C
Sbjct: 96 -RTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFAC 154
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EFAL E+ + C+ ++ M + E N N
Sbjct: 155 FSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNLKREVENGN 195
>gi|297278964|ref|XP_001097664.2| PREDICTED: LIM/homeobox protein Lhx8-like [Macaca mulatta]
gi|402854981|ref|XP_003892128.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 1 [Papio anubis]
Length = 356
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 79/161 (49%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V DL WH CL C+ C
Sbjct: 74 VCNSCGLEIVDKYLLKVN-DLCWHVRCLSCSVC--------------------------- 105
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C+++D +CK DY R +GT+C +C + D+V RAK +YH+ CF C
Sbjct: 106 -RTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFAC 164
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EFAL E+ + C+ ++ M + E N N
Sbjct: 165 FSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNLKREVENGN 205
>gi|281338511|gb|EFB14095.1| hypothetical protein PANDA_006061 [Ailuropoda melanoleuca]
Length = 164
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 70/148 (47%), Gaps = 30/148 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCGG+I D+++L A D WH+ CL+C+ C +
Sbjct: 23 CAGCGGKIADRFLL-YAMDSYWHSRCLKCSCC---------------------------Q 54
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFC 124
Q D +C+ + G C+ DY+RLFG C C + + VMRA+ +YH++CF
Sbjct: 55 AQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFT 114
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C C +LVPGD F LFC+ D
Sbjct: 115 CSTCRNRLVPGDRFHYINGSLFCEHDRP 142
>gi|2285798|dbj|BAA21649.1| LIM-homeodomain protein [Mus musculus]
Length = 426
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 80/169 (47%), Gaps = 30/169 (17%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V DL WH CL C+ C
Sbjct: 154 VCSSCGLEIVDKYLLKVN-DLCWHVRCLSCSVC--------------------------- 185
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C+++D +CK DY R +GT+C +C + D+V RAK +YH+ CF C
Sbjct: 186 -RTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFAC 244
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGM-DKSSNGENNNNNTNINNNL 173
C +QL G+EFAL E+ + C+ + M D N N ++ L
Sbjct: 245 FSCKRQLSTGEEFALVEEKVLCRVHFDCMLDNLKREVENGNGISVEGAL 293
>gi|368711326|ref|NP_001243043.1| LIM/homeobox protein Lhx8 isoform 2 [Homo sapiens]
gi|395730366|ref|XP_003775714.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 2 [Pongo abelii]
gi|410033125|ref|XP_003949492.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 1 [Pan troglodytes]
gi|426330050|ref|XP_004026039.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 2 [Gorilla gorilla
gorilla]
gi|441637563|ref|XP_004090066.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 2 [Nomascus
leucogenys]
Length = 346
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 79/161 (49%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V DL WH CL C+ C
Sbjct: 64 VCNSCGLEIVDKYLLKVN-DLCWHVRCLSCSVC--------------------------- 95
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C+++D +CK DY R +GT+C +C + D+V RAK +YH+ CF C
Sbjct: 96 -RTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFAC 154
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EFAL E+ + C+ ++ M + E N N
Sbjct: 155 FSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNLKREVENGN 195
>gi|123995901|gb|ABM85552.1| LIM domain only 4 [synthetic construct]
Length = 165
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 70/148 (47%), Gaps = 30/148 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCGG+I D+++L A D WH+ CL+C+ C +
Sbjct: 23 CAGCGGKIADRFLL-YAMDSYWHSRCLKCSCC---------------------------Q 54
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFC 124
Q D +C+ + G C+ DY+RLFG C C + + VMRA+ +YH++CF
Sbjct: 55 AQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFT 114
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C C +LVPGD F LFC+ D
Sbjct: 115 CSTCRNRLVPGDRFHYINGSLFCEHDRP 142
>gi|402854983|ref|XP_003892129.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 2 [Papio anubis]
Length = 346
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 79/161 (49%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V DL WH CL C+ C
Sbjct: 64 VCNSCGLEIVDKYLLKVN-DLCWHVRCLSCSVC--------------------------- 95
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C+++D +CK DY R +GT+C +C + D+V RAK +YH+ CF C
Sbjct: 96 -RTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFAC 154
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EFAL E+ + C+ ++ M + E N N
Sbjct: 155 FSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNLKREVENGN 195
>gi|390466088|ref|XP_002751019.2| PREDICTED: LIM/homeobox protein Lhx8 [Callithrix jacchus]
Length = 346
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 79/161 (49%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V DL WH CL C+ C
Sbjct: 64 VCNSCGLEIVDKYLLKVN-DLCWHVRCLSCSVC--------------------------- 95
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C+++D +CK DY R +GT+C +C + D+V RAK +YH+ CF C
Sbjct: 96 -RTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFAC 154
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EFAL E+ + C+ ++ M + E N N
Sbjct: 155 FSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNLKREVENGN 195
>gi|345802215|ref|XP_547330.3| PREDICTED: LIM/homeobox protein Lhx8 [Canis lupus familiaris]
Length = 462
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 81/169 (47%), Gaps = 30/169 (17%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V DL WH CL C+ C
Sbjct: 190 VCNSCGREIVDKYLLKVN-DLCWHVRCLSCSVC--------------------------- 221
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C+++D +CK DY R +GT+C +C + D+V RAK +YH+ CF C
Sbjct: 222 -RTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFAC 280
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGM-DKSSNGENNNNNTNINNNL 173
C +QL G+EFAL E+ + C+ ++ M D N N ++ L
Sbjct: 281 FSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNLKREVENGNGISVEGAL 329
>gi|51494804|gb|AAH40321.1| LIM homeobox 8 [Homo sapiens]
gi|312150920|gb|ADQ31972.1| LIM homeobox 8 [synthetic construct]
Length = 356
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 79/161 (49%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V DL WH CL C+ C
Sbjct: 74 VCNSCGLEIVDKYLLKVN-DLCWHVRCLSCSVC--------------------------- 105
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C+++D +CK DY R +GT+C +C + D+V RAK +YH+ CF C
Sbjct: 106 -RTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFAC 164
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EFAL E+ + C+ ++ M + E N N
Sbjct: 165 FSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNLKREVENGN 205
>gi|227430299|ref|NP_001153058.1| LIM homeobox 2a [Danio rerio]
gi|226434001|gb|ACO56117.1| LIM homeodomain protein 2a [Danio rerio]
Length = 320
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 70/144 (48%), Gaps = 30/144 (20%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C GCG I D++ L +A + WH CL+C+ C
Sbjct: 12 VCAGCGALISDRFYL-LAAERRWHERCLKCSAC--------------------------- 43
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
L+ TCF + G YCK DY R F + +C +C+L + VMRA++ +YH+ CF
Sbjct: 44 -QTDLESELTCFSKHGDIYCKEDYYRRFSSQRCARCHLGISATEIVMRARDLVYHLSCFS 102
Query: 125 CVVCGKQLVPGDEFALREDGLFCK 148
C C K L+ GD + ++E ++C+
Sbjct: 103 CATCHKVLLTGDHYGMKETSVYCR 126
>gi|432899669|ref|XP_004076609.1| PREDICTED: LIM/homeobox protein Lhx1-like [Oryzias latipes]
Length = 402
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 78/158 (49%), Gaps = 36/158 (22%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C C I D+++L+V D WH C++C EC L E C
Sbjct: 4 CTSCEKPILDRFLLKVL-DRPWHVKCVQCCECKCSLTEKC-------------------- 42
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F RDG+ YCK D+ R FGTKC C+ D V RAK+K++H+ CF CV
Sbjct: 43 ----------FSRDGRLYCKNDFFRRFGTKCGGCSQGILPSDLVRRAKSKVFHLNCFTCV 92
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDHEGMDKSSNGENN 163
+C KQL G+E + L E CK+D++ +SNG++
Sbjct: 93 MCNKQLSTGEELYILDEFKFVCKEDYQ----NSNGKDT 126
>gi|345306388|ref|XP_001506631.2| PREDICTED: LIM domain transcription factor LMO4-like
[Ornithorhynchus anatinus]
Length = 175
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 77/164 (46%), Gaps = 32/164 (19%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCGG+I D+++L A D WH+ CL+C+ C +
Sbjct: 23 CAGCGGKIADRFLL-YAMDSYWHSRCLKCSCC---------------------------Q 54
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFC 124
Q D +C+ + G C+ DY+RLFG C C + + VMRA+ +YH++CF
Sbjct: 55 AQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFT 114
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNNTN 168
C C +LVPGD F LFC +H+ NG N+ +N
Sbjct: 115 CSTCRNRLVPGDRFHYINGSLFC--EHDRPTALINGHLNSLQSN 156
>gi|327270759|ref|XP_003220156.1| PREDICTED: LIM domain transcription factor LMO4-like [Anolis
carolinensis]
gi|387019075|gb|AFJ51655.1| LIM domain transcription factor LMO4-like [Crotalus adamanteus]
Length = 165
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 70/148 (47%), Gaps = 30/148 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCGG+I D+++L A D WH+ CL+C+ C L E T
Sbjct: 23 CAGCGGKIADRFLL-YAMDSYWHSRCLKCSCCQAQLGEIGT------------------- 62
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ + G C+ DY+RLFG C C + + VMRA+ +YH++CF
Sbjct: 63 --------SCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFT 114
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C C +LVPGD F LFC+ D
Sbjct: 115 CSTCRNRLVPGDRFHYINGSLFCEHDRP 142
>gi|284795255|ref|NP_001087890.2| LIM domain only 4, gene 1 [Xenopus laevis]
Length = 165
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 70/148 (47%), Gaps = 30/148 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCGG+I D+++L A D WH+ CL+C+ C L E T
Sbjct: 23 CAGCGGKIADRFLL-YAMDSYWHSRCLKCSCCQAQLGEIGT------------------- 62
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ + G C+ DY+RLFG C C + + VMRA+ +YH++CF
Sbjct: 63 --------SCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFT 114
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C C +LVPGD F LFC+ D
Sbjct: 115 CSTCRNRLVPGDRFHYINGSLFCEHDRP 142
>gi|58866006|ref|NP_001012219.1| LIM/homeobox protein Lhx8 [Rattus norvegicus]
gi|58476609|gb|AAH90011.1| LIM homeobox 8 [Rattus norvegicus]
Length = 336
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 72/143 (50%), Gaps = 29/143 (20%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V DL WH CL C+ C
Sbjct: 64 VCSSCGLEIVDKYLLKVN-DLCWHVRCLSCSVC--------------------------- 95
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C+++D +CK DY R +GT+C +C + D+V RAK +YH+ CF C
Sbjct: 96 -RTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFAC 154
Query: 126 VVCGKQLVPGDEFALREDGLFCK 148
C +QL G+EFAL E+ + C+
Sbjct: 155 FSCKRQLSTGEEFALVEEKVLCR 177
>gi|395530587|ref|XP_003767372.1| PREDICTED: LIM domain transcription factor LMO4 [Sarcophilus
harrisii]
Length = 165
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 70/148 (47%), Gaps = 30/148 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCGG+I D+++L A D WH+ CL+C+ C +
Sbjct: 23 CAGCGGKIADRFLL-YAMDSYWHSRCLKCSCC---------------------------Q 54
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFC 124
Q D +C+ + G C+ DY+RLFG C C + + VMRA+ +YH++CF
Sbjct: 55 AQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFT 114
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C C +LVPGD F LFC+ D
Sbjct: 115 CSTCRNRLVPGDRFHYINGSLFCEHDRP 142
>gi|291398678|ref|XP_002715959.1| PREDICTED: LIM homeobox 8 [Oryctolagus cuniculus]
Length = 371
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 81/169 (47%), Gaps = 30/169 (17%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V DL WH CL C+ C
Sbjct: 95 VCNSCGLEIVDKYLLKVN-DLCWHVRCLSCSVC--------------------------- 126
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C+++D +CK DY R +GT+C +C + D+V RAK +YH+ CF C
Sbjct: 127 -RTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFAC 185
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGM-DKSSNGENNNNNTNINNNL 173
C +QL G+EFAL E+ + C+ ++ M D N N ++ L
Sbjct: 186 FSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNLKREVENGNGISVEGAL 234
>gi|29469078|ref|NP_817093.1| LIM domain only 4a [Danio rerio]
gi|19879278|gb|AAK26166.1| LIM only 4 protein [Danio rerio]
gi|28277424|gb|AAH45835.1| LIM domain only 4 [Danio rerio]
gi|182890324|gb|AAI64026.1| Lmo4 protein [Danio rerio]
Length = 167
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 69/149 (46%), Gaps = 30/149 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCGG+I D+++L + D WH CL+C+ C L E
Sbjct: 24 CAGCGGRISDRFLL-FSMDRYWHTRCLKCSCCQAQLGE---------------------- 60
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFG--TKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
TCF + G C+ DY+RLFG C C + + VMRA+ +YH++CF
Sbjct: 61 -----IGSTCFSKGGMILCRNDYIRLFGHSGACSACGQSIPASEMVMRAQGNVYHLKCFT 115
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEG 153
C C +LVPGD F +FC+ D G
Sbjct: 116 CATCRNRLVPGDRFHYVNGTIFCEHDRPG 144
>gi|24656997|ref|NP_523907.2| arrowhead, isoform A [Drosophila melanogaster]
gi|23092945|gb|AAF47800.2| arrowhead, isoform A [Drosophila melanogaster]
Length = 214
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 76/163 (46%), Gaps = 33/163 (20%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K L C CG I D++ L V WHA CLRC C C
Sbjct: 2 KTELRSCAACGEPISDRFFLEVG-GCSWHAHCLRC----------CMCMCP--------- 41
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
LD +CF+R+ + YCK DY + FG KC KC D+V RA+ ++H+
Sbjct: 42 ---------LDRQQSCFIRERQVYCKADYSKNFGAKCSKCCRGISASDWVRRARELVFHL 92
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDH----EGMDKSSN 159
CF C CG+QL G++FAL +D + CK + EG SS+
Sbjct: 93 ACFACDQCGRQLSTGEQFALMDDRVLCKAHYLETVEGGTTSSD 135
>gi|5803072|ref|NP_006760.1| LIM domain transcription factor LMO4 [Homo sapiens]
gi|6754560|ref|NP_034853.1| LIM domain transcription factor LMO4 [Mus musculus]
gi|57527555|ref|NP_001009708.1| LIM domain transcription factor LMO4 [Rattus norvegicus]
gi|77736447|ref|NP_001029923.1| LIM domain transcription factor LMO4 [Bos taurus]
gi|162951803|ref|NP_001106156.1| LIM domain transcription factor LMO4 [Sus scrofa]
gi|239937456|ref|NP_001155241.1| LIM domain transcription factor LMO4 [Mus musculus]
gi|239937458|ref|NP_001155242.1| LIM domain transcription factor LMO4 [Mus musculus]
gi|383872290|ref|NP_001244770.1| LIM domain transcription factor LMO4 [Macaca mulatta]
gi|57088261|ref|XP_537086.1| PREDICTED: LIM domain transcription factor LMO4 isoform 1 [Canis
lupus familiaris]
gi|73959644|ref|XP_867313.1| PREDICTED: LIM domain transcription factor LMO4 isoform 6 [Canis
lupus familiaris]
gi|114557534|ref|XP_001144748.1| PREDICTED: LIM domain transcription factor LMO4 isoform 6 [Pan
troglodytes]
gi|114557536|ref|XP_001144677.1| PREDICTED: LIM domain transcription factor LMO4 isoform 5 [Pan
troglodytes]
gi|149709390|ref|XP_001495634.1| PREDICTED: LIM domain transcription factor LMO4-like [Equus
caballus]
gi|291398567|ref|XP_002715923.1| PREDICTED: LIM domain only 4 isoform 1 [Oryctolagus cuniculus]
gi|291398569|ref|XP_002715924.1| PREDICTED: LIM domain only 4 isoform 2 [Oryctolagus cuniculus]
gi|296208425|ref|XP_002751086.1| PREDICTED: LIM domain transcription factor LMO4-like isoform 1
[Callithrix jacchus]
gi|296208427|ref|XP_002751087.1| PREDICTED: LIM domain transcription factor LMO4-like isoform 2
[Callithrix jacchus]
gi|297664521|ref|XP_002810690.1| PREDICTED: LIM domain transcription factor LMO4 isoform 1 [Pongo
abelii]
gi|297664523|ref|XP_002810691.1| PREDICTED: LIM domain transcription factor LMO4 isoform 2 [Pongo
abelii]
gi|301764579|ref|XP_002917710.1| PREDICTED: LIM domain transcription factor LMO4-like [Ailuropoda
melanoleuca]
gi|332221831|ref|XP_003260067.1| PREDICTED: LIM domain transcription factor LMO4 isoform 1 [Nomascus
leucogenys]
gi|332221833|ref|XP_003260068.1| PREDICTED: LIM domain transcription factor LMO4 isoform 2 [Nomascus
leucogenys]
gi|344278752|ref|XP_003411156.1| PREDICTED: LIM domain transcription factor LMO4-like [Loxodonta
africana]
gi|345801722|ref|XP_003434840.1| PREDICTED: LIM domain transcription factor LMO4 [Canis lupus
familiaris]
gi|395821809|ref|XP_003784224.1| PREDICTED: LIM domain transcription factor LMO4 [Otolemur
garnettii]
gi|397467290|ref|XP_003805357.1| PREDICTED: LIM domain transcription factor LMO4 [Pan paniscus]
gi|402855150|ref|XP_003892201.1| PREDICTED: LIM domain transcription factor LMO4 [Papio anubis]
gi|403305527|ref|XP_003943313.1| PREDICTED: LIM domain transcription factor LMO4 isoform 1 [Saimiri
boliviensis boliviensis]
gi|403305529|ref|XP_003943314.1| PREDICTED: LIM domain transcription factor LMO4 isoform 2 [Saimiri
boliviensis boliviensis]
gi|410967649|ref|XP_003990330.1| PREDICTED: LIM domain transcription factor LMO4 isoform 1 [Felis
catus]
gi|410967651|ref|XP_003990331.1| PREDICTED: LIM domain transcription factor LMO4 isoform 2 [Felis
catus]
gi|410967653|ref|XP_003990332.1| PREDICTED: LIM domain transcription factor LMO4 isoform 3 [Felis
catus]
gi|426215916|ref|XP_004002215.1| PREDICTED: LIM domain transcription factor LMO4 isoform 1 [Ovis
aries]
gi|426215918|ref|XP_004002216.1| PREDICTED: LIM domain transcription factor LMO4 isoform 2 [Ovis
aries]
gi|426330255|ref|XP_004026136.1| PREDICTED: LIM domain transcription factor LMO4 isoform 1 [Gorilla
gorilla gorilla]
gi|426330257|ref|XP_004026137.1| PREDICTED: LIM domain transcription factor LMO4 isoform 2 [Gorilla
gorilla gorilla]
gi|48428992|sp|P61968.1|LMO4_HUMAN RecName: Full=LIM domain transcription factor LMO4; AltName:
Full=Breast tumor autoantigen; AltName: Full=LIM domain
only protein 4; Short=LMO-4
gi|48428993|sp|P61969.1|LMO4_MOUSE RecName: Full=LIM domain transcription factor LMO4; AltName:
Full=Breast tumor autoantigen; AltName: Full=LIM domain
only protein 4; Short=LMO-4
gi|119371422|sp|Q3SWZ8.1|LMO4_BOVIN RecName: Full=LIM domain transcription factor LMO4; AltName:
Full=LIM domain only protein 4; Short=LMO-4
gi|1914877|gb|AAB51073.1|AAB51073 breast tumor autoantigen [Homo sapiens]
gi|3702854|gb|AAC62958.1| LIM domain transcription factor LMO4 [Mus musculus]
gi|3983077|gb|AAC83789.1| LIM only 4 [Mus musculus]
gi|4063896|gb|AAC98510.1| nuclear LIM-only 4 protein [Mus musculus]
gi|13097522|gb|AAH03488.1| Lmo4 protein [Mus musculus]
gi|13097819|gb|AAH03600.1| LIM domain only 4 [Homo sapiens]
gi|17389229|gb|AAH17673.1| LIM domain only 4 [Homo sapiens]
gi|26348597|dbj|BAC37938.1| unnamed protein product [Mus musculus]
gi|37537228|gb|AAH10278.3| LIM domain only 4 [Mus musculus]
gi|41351121|gb|AAH65818.1| LMO4 protein [Homo sapiens]
gi|56388757|gb|AAH87700.1| LIM domain only 4 [Rattus norvegicus]
gi|72679867|gb|AAI00383.1| Lmo4 protein [Mus musculus]
gi|74198060|dbj|BAE35210.1| unnamed protein product [Mus musculus]
gi|74209791|dbj|BAE23609.1| unnamed protein product [Mus musculus]
gi|74356507|gb|AAI04583.1| LIM domain only 4 [Bos taurus]
gi|119593574|gb|EAW73168.1| LIM domain only 4, isoform CRA_a [Homo sapiens]
gi|119593575|gb|EAW73169.1| LIM domain only 4, isoform CRA_a [Homo sapiens]
gi|123981088|gb|ABM82373.1| LIM domain only 4 [synthetic construct]
gi|148680084|gb|EDL12031.1| LIM domain only 4, isoform CRA_a [Mus musculus]
gi|148680085|gb|EDL12032.1| LIM domain only 4, isoform CRA_a [Mus musculus]
gi|148680086|gb|EDL12033.1| LIM domain only 4, isoform CRA_a [Mus musculus]
gi|149026128|gb|EDL82371.1| LIM domain only 4, isoform CRA_a [Rattus norvegicus]
gi|149026129|gb|EDL82372.1| LIM domain only 4, isoform CRA_a [Rattus norvegicus]
gi|149026130|gb|EDL82373.1| LIM domain only 4, isoform CRA_a [Rattus norvegicus]
gi|160858222|dbj|BAF93844.1| LIM domain only 4 [Sus scrofa]
gi|168275774|dbj|BAG10607.1| LIM domain transcription factor LMO4 [synthetic construct]
gi|296489301|tpg|DAA31414.1| TPA: LIM domain transcription factor LMO4 [Bos taurus]
gi|380785535|gb|AFE64643.1| LIM domain transcription factor LMO4 [Macaca mulatta]
gi|383411513|gb|AFH28970.1| LIM domain transcription factor LMO4 [Macaca mulatta]
gi|384944322|gb|AFI35766.1| LIM domain transcription factor LMO4 [Macaca mulatta]
gi|410208742|gb|JAA01590.1| LIM domain only 4 [Pan troglodytes]
gi|410247022|gb|JAA11478.1| LIM domain only 4 [Pan troglodytes]
gi|410297806|gb|JAA27503.1| LIM domain only 4 [Pan troglodytes]
gi|410340611|gb|JAA39252.1| LIM domain only 4 [Pan troglodytes]
gi|410340613|gb|JAA39253.1| LIM domain only 4 [Pan troglodytes]
Length = 165
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 70/148 (47%), Gaps = 30/148 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCGG+I D+++L A D WH+ CL+C+ C +
Sbjct: 23 CAGCGGKIADRFLL-YAMDSYWHSRCLKCSCC---------------------------Q 54
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFC 124
Q D +C+ + G C+ DY+RLFG C C + + VMRA+ +YH++CF
Sbjct: 55 AQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFT 114
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C C +LVPGD F LFC+ D
Sbjct: 115 CSTCRNRLVPGDRFHYINGSLFCEHDRP 142
>gi|52345752|ref|NP_001004922.1| LIM domain transcription factor LMO4.2 [Xenopus (Silurana)
tropicalis]
gi|82183496|sp|Q6DJ06.1|LMO42_XENTR RecName: Full=LIM domain transcription factor LMO4.2; AltName:
Full=LIM domain only protein 4.2; Short=LMO-4.2
gi|49522594|gb|AAH75379.1| MGC89099 protein [Xenopus (Silurana) tropicalis]
gi|89268694|emb|CAJ82708.1| LIM domain only 4 [Xenopus (Silurana) tropicalis]
Length = 165
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 70/148 (47%), Gaps = 30/148 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCGG+I D+++L A D WH+ CL+C+ C L E T
Sbjct: 23 CAGCGGKIADRFLL-YAMDSYWHSRCLKCSCCQAQLGEIGT------------------- 62
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ + G C+ DY+RLFG C C + + VMRA+ +YH++CF
Sbjct: 63 --------SCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFT 114
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C C +LVPGD F LFC+ D
Sbjct: 115 CSTCRNRLVPGDRFHYINGSLFCEHDRP 142
>gi|113195680|ref|NP_034843.2| LIM/homeobox protein Lhx8 [Mus musculus]
gi|341941136|sp|O35652.4|LHX8_MOUSE RecName: Full=LIM/homeobox protein Lhx8; Short=LIM homeobox protein
8; AltName: Full=L3; AltName: Full=LIM/homeobox protein
Lhx7; Short=LIM homeobox protein 7
gi|3172042|dbj|BAA28628.1| LIM-homeodomain protein [Mus musculus]
gi|74227158|dbj|BAE38359.1| unnamed protein product [Mus musculus]
gi|116138618|gb|AAI25284.1| LIM homeobox protein 8 [Mus musculus]
gi|116138795|gb|AAI25282.1| LIM homeobox protein 8 [Mus musculus]
gi|148679947|gb|EDL11894.1| LIM homeobox protein 8, isoform CRA_b [Mus musculus]
gi|219519204|gb|AAI44769.1| LIM homeobox protein 8 [Mus musculus]
gi|1587483|prf||2206477A LIM homeo domain transcription factor
Length = 367
Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 80/169 (47%), Gaps = 30/169 (17%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V DL WH CL C+ C
Sbjct: 95 VCSSCGLEIVDKYLLKVN-DLCWHVRCLSCSVC--------------------------- 126
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C+++D +CK DY R +GT+C +C + D+V RAK +YH+ CF C
Sbjct: 127 -RTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFAC 185
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGM-DKSSNGENNNNNTNINNNL 173
C +QL G+EFAL E+ + C+ + M D N N ++ L
Sbjct: 186 FSCKRQLSTGEEFALVEEKVLCRVHFDCMLDNLKREVENGNGISVEGAL 234
>gi|149026292|gb|EDL82535.1| rCG29002 [Rattus norvegicus]
Length = 367
Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 80/169 (47%), Gaps = 30/169 (17%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V DL WH CL C+ C
Sbjct: 95 VCSSCGLEIVDKYLLKVN-DLCWHVRCLSCSVC--------------------------- 126
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C+++D +CK DY R +GT+C +C + D+V RAK +YH+ CF C
Sbjct: 127 -RTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFAC 185
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGM-DKSSNGENNNNNTNINNNL 173
C +QL G+EFAL E+ + C+ + M D N N ++ L
Sbjct: 186 FSCKRQLSTGEEFALVEEKVLCRVHFDCMLDNLKREVENGNGISVEGAL 234
>gi|45383886|ref|NP_989443.1| LIM domain transcription factor LMO4 [Gallus gallus]
gi|22347822|gb|AAM95988.1| LIM domain only 4 protein [Gallus gallus]
Length = 165
Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 70/148 (47%), Gaps = 30/148 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCGG+I D+++L A D WH+ CL+C+ C +
Sbjct: 23 CAGCGGKIADRFLL-YAMDSYWHSRCLKCSCC---------------------------Q 54
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFC 124
Q D +C+ + G C+ DY+RLFG C C + + VMRA+ +YH++CF
Sbjct: 55 AQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFT 114
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C C +LVPGD F LFC+ D
Sbjct: 115 CSTCRNRLVPGDRFHYINGSLFCEHDRP 142
>gi|224057485|ref|XP_002195837.1| PREDICTED: LIM domain transcription factor LMO4 [Taeniopygia
guttata]
Length = 165
Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 70/148 (47%), Gaps = 30/148 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCGG+I D+++L A D WH+ CL+C+ C +
Sbjct: 23 CAGCGGKIADRFLL-YAMDSYWHSRCLKCSCC---------------------------Q 54
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFC 124
Q D +C+ + G C+ DY+RLFG C C + + VMRA+ +YH++CF
Sbjct: 55 AQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFT 114
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C C +LVPGD F LFC+ D
Sbjct: 115 CSTCRNRLVPGDRFHYINGSLFCEHDRP 142
>gi|3319763|emb|CAA04012.1| Lhx7 protein [Mus musculus]
Length = 365
Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 80/169 (47%), Gaps = 30/169 (17%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V DL WH CL C+ C
Sbjct: 94 VCSSCGLEIVDKYLLKVN-DLCWHVRCLSCSVC--------------------------- 125
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C+++D +CK DY R +GT+C +C + D+V RAK +YH+ CF C
Sbjct: 126 -RTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFAC 184
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGM-DKSSNGENNNNNTNINNNL 173
C +QL G+EFAL E+ + C+ + M D N N ++ L
Sbjct: 185 FSCKRQLSTGEEFALVEEKVLCRVHFDCMLDNLKREVENGNGISVEGAL 233
>gi|393904553|gb|EJD73731.1| hypothetical protein LOAG_18862, partial [Loa loa]
Length = 114
Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 69/137 (50%), Gaps = 31/137 (22%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+++C GC I D+Y+ V WHA C++CA+C L E
Sbjct: 1 MAICAGCNNAILDRYVFHVLEK-AWHATCIQCADCKALLSE------------------- 40
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
TCF R+G C++D+ R +GT+C CN+ R D V RA++K++HVQCF
Sbjct: 41 -----------TCFTRNGLILCRKDFARRYGTRCAGCNMGLDRNDLVRRARDKVFHVQCF 89
Query: 124 CCVVCGKQLVPGDEFAL 140
C VC K+L G++ +
Sbjct: 90 QCTVCQKKLDTGEQLYI 106
>gi|49900550|gb|AAH76053.1| LIM domain only 4, like [Danio rerio]
Length = 165
Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 70/148 (47%), Gaps = 30/148 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCGG+I D+++L A D WH+ CL+C+ C L E T
Sbjct: 23 CAGCGGKIADRFLL-YAMDSYWHSRCLKCSCCQAQLGEIGT------------------- 62
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ + G C+ DY+RLFG C C + + VMRA+ +YH++CF
Sbjct: 63 --------SCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFT 114
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C C +LVPGD F LFC+ D
Sbjct: 115 CSTCRNRLVPGDRFHYINGSLFCEHDRP 142
>gi|431897001|gb|ELK06265.1| LIM/homeobox protein Lhx8 [Pteropus alecto]
Length = 306
Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 81/169 (47%), Gaps = 30/169 (17%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V DL WH CL C+ C
Sbjct: 95 VCNSCGLEIVDKYLLKVN-DLCWHVRCLSCSVC--------------------------- 126
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C+++D +CK DY R +GT+C +C + D+V RAK +YH+ CF C
Sbjct: 127 -RTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFAC 185
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGM-DKSSNGENNNNNTNINNNL 173
C +QL G+EFAL E+ + C+ ++ M D N N ++ L
Sbjct: 186 FSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNLKREVENGNGISVEGAL 234
>gi|326670376|ref|XP_002663297.2| PREDICTED: LIM domain transcription factor LMO4.2 [Danio rerio]
Length = 195
Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 70/149 (46%), Gaps = 30/149 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCGG+I D+++L + + WH+ CL+C+ C L E
Sbjct: 16 CAGCGGRISDRFLL-FSMERYWHSRCLKCSCCQAQLGE---------------------- 52
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFG--TKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
TC+ + G C+ DY+RLFG C C + + VMRA+ +YH++CF
Sbjct: 53 -----IGSTCYSKSGMILCRTDYIRLFGHTGACSACGQSIPASEMVMRAQGNVYHLKCFS 107
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEG 153
C C QLVPGD F +FC+ D G
Sbjct: 108 CATCRNQLVPGDRFHYVNGTIFCEHDRPG 136
>gi|348513565|ref|XP_003444312.1| PREDICTED: LIM domain transcription factor LMO4-like [Oreochromis
niloticus]
Length = 176
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 69/148 (46%), Gaps = 30/148 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCGG+I D+++L D WH+ CL+C+ C L E T
Sbjct: 23 CAGCGGKIADRFLLYTM-DSYWHSRCLKCSCCQAQLGEIGT------------------- 62
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ + G C+ DY+RLFG C C + + VMRA+ +YH++CF
Sbjct: 63 --------SCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFT 114
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C C +LVPGD F LFC+ D
Sbjct: 115 CSTCRNRLVPGDRFHYINGSLFCEHDRP 142
>gi|391341454|ref|XP_003745045.1| PREDICTED: LIM/homeobox protein Lhx9-like [Metaseiulus
occidentalis]
Length = 343
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 69/143 (48%), Gaps = 30/143 (20%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
LC GCG I D+Y L V ++ WH CL+CA C L+++ +CF+R G+ Y
Sbjct: 24 LCTGCGNPICDRYFLCVG-EMYWHVGCLQCAHCKTTLEQHASCFLRSGRIY--------- 73
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTK-CEKCNLNFKREDFVMRAKNKIYHVQCFC 124
CK DY RLF + C +CN+ + VMR ++ +YH CF
Sbjct: 74 -------------------CKNDYFRLFSLRPCSRCNIGIFSTELVMRVRDYVYHTHCFT 114
Query: 125 CVVCGKQLVPGDEFALREDGLFC 147
C C L GD F +R+ ++C
Sbjct: 115 CAWCNIPLSRGDTFGVRDQLVYC 137
>gi|431915961|gb|ELK16215.1| LIM/homeobox protein Lhx4 [Pteropus alecto]
Length = 329
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Query: 76 CFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPG 135
CF R G YCK D+ + FGTKC C V +A++ +YH+ CF C++C +QL G
Sbjct: 7 CFSRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICSRQLATG 66
Query: 136 DEFALREDG-LFCKDDHEGM---DKSSNGENNNNNTNINNNLHNLNNEGSNSGK 185
DEF L EDG L CK+D+E D S G T L L N NS K
Sbjct: 67 DEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLKNAYKNSPK 120
>gi|51571947|ref|NP_001003980.1| LIM/homeobox protein Lhx8 [Danio rerio]
gi|50953779|gb|AAT90496.1| Lhx7 [Danio rerio]
gi|108742021|gb|AAI17602.1| LIM homeobox 8 [Danio rerio]
Length = 332
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 30/166 (18%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C CG +I D+Y+L+V D+ WH CL C+ C
Sbjct: 49 AICTSCGTEIVDKYLLKVN-DMCWHVRCLSCSVC-------------------------- 81
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
L + +C++++ + +CK DY R +GT+C C N D+V RAK YH+ CF
Sbjct: 82 --QTSLGRHISCYIKEKEIFCKLDYFRKYGTRCAHCGRNIHSNDWVRRAKGNTYHLACFA 139
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEGM-DKSSNGENNNNNTNI 169
C C +QL G+EFAL ++ + C+ ++ M D N N+
Sbjct: 140 CFSCKRQLSTGEEFALVDERVLCRVHYDCMLDNLKRAMENGKGVNV 185
>gi|118137504|pdb|2DFY|X Chain X, Crystal Structure Of A Cyclized Protein Fusion Of Lmo4 Lim
Domains 1 And 2 With The Lim Interacting Domain Of Ldb1
gi|118137505|pdb|2DFY|C Chain C, Crystal Structure Of A Cyclized Protein Fusion Of Lmo4 Lim
Domains 1 And 2 With The Lim Interacting Domain Of Ldb1
Length = 195
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 69/146 (47%), Gaps = 30/146 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCGG+I D+++L A D WH+ CL+C+ C +
Sbjct: 6 CAGCGGKIADRFLL-YAMDSYWHSRCLKCSSC---------------------------Q 37
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFC 124
Q D + + + G C+ DY+RLFG C C + + VMRA+ +YH++CF
Sbjct: 38 AQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFT 97
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDD 150
C C +LVPGD F LFC+ D
Sbjct: 98 CSTCRNRLVPGDRFHYINGSLFCEHD 123
>gi|56553691|pdb|1RUT|X Chain X, Complex Of Lmo4 Lim Domains 1 And 2 With The Ldb1 Lid
Domain
Length = 188
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 69/146 (47%), Gaps = 30/146 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCGG+I D+++L A D WH+ CL+C+ C +
Sbjct: 8 CAGCGGKIADRFLL-YAMDSYWHSRCLKCSSC---------------------------Q 39
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFC 124
Q D + + + G C+ DY+RLFG C C + + VMRA+ +YH++CF
Sbjct: 40 AQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFT 99
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDD 150
C C +LVPGD F LFC+ D
Sbjct: 100 CSTCRNRLVPGDRFHYINGSLFCEHD 125
>gi|74213688|dbj|BAE35644.1| unnamed protein product [Mus musculus]
Length = 367
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 80/169 (47%), Gaps = 30/169 (17%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V DL WH CL C+ C
Sbjct: 95 VCSSCGLEIVDKYLLKVN-DLCWHVRCLSCSVC--------------------------- 126
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C+++D +CK DY R +GT+C +C + D+V RAK +YH+ CF C
Sbjct: 127 -RTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSIDWVRRAKGNVYHLACFAC 185
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGM-DKSSNGENNNNNTNINNNL 173
C +QL G+EFAL E+ + C+ + M D N N ++ L
Sbjct: 186 FSCKRQLSTGEEFALVEEKVLCRVHFDCMLDNLKREVENGNGISVEGAL 234
>gi|242011200|ref|XP_002426343.1| LIM/homeobox protein Lhx4, putative [Pediculus humanus corporis]
gi|212510420|gb|EEB13605.1| LIM/homeobox protein Lhx4, putative [Pediculus humanus corporis]
Length = 366
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 85/191 (44%), Gaps = 41/191 (21%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ C GC I D++IL+V D WHA CL C +C L + CF R+G
Sbjct: 21 IPKCGGCQELILDRFILKVL-DRTWHAKCLNCNDCGGPLTDK--CFARNG---------- 67
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
+ YCK D+ + FGTKC C V RA+ +YH+QCF
Sbjct: 68 ------------------QVYCKDDFFKRFGTKCAGCEQGIPPTQVVRRAQENVYHLQCF 109
Query: 124 CCVVCGKQLVPGDEFALRED-GLFCKDDHEGMDKSSNG-------ENNNNNTNIN-NNLH 174
C +C +QL GDEF L ED L CK D+E K+ +G N T I L
Sbjct: 110 ACAMCARQLNTGDEFYLMEDKKLVCKPDYEAA-KTKDGVCLDGDQPNKRPRTTITAKQLE 168
Query: 175 NLNNEGSNSGK 185
L + +NS K
Sbjct: 169 TLKSAYNNSPK 179
>gi|18858973|ref|NP_571291.1| LIM/homeobox protein Lhx1 [Danio rerio]
gi|2497670|sp|Q90476.1|LHX1_DANRE RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein Lim-1
gi|577525|gb|AAA92157.1| homeodomain protein [Danio rerio]
gi|190336961|gb|AAI62664.1| LIM homeobox 1a [Danio rerio]
gi|190339482|gb|AAI62396.1| LIM homeobox 1a [Danio rerio]
Length = 405
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 79/159 (49%), Gaps = 35/159 (22%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 4 CAGCERPILDRFLLNVL-DRAWHIKCVQCCECKCNLTEKC-------------------- 42
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK YCK D+ R FGTKC C D V RA++K++H+ CF C+
Sbjct: 43 ----------FSREGKLYCKNDFFRRFGTKCAGCAQGISPNDLVRRARSKVFHLNCFTCM 92
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDHEGMDKSSNGENNN 164
+C KQL G+E + + E+ CKDD+ ++NG+++N
Sbjct: 93 MCNKQLSTGEELYIIDENKFVCKDDYL---SNTNGKDSN 128
>gi|340722532|ref|XP_003399658.1| PREDICTED: LIM/homeobox protein Lhx3-like [Bombus terrestris]
Length = 486
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 70/149 (46%), Gaps = 33/149 (22%)
Query: 7 CVGCGGQIHDQYILRVAPDLE--WHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
C GC I D+Y+LRV LE WHA CL C +C L + CF R+G +CK D+
Sbjct: 111 CGGCQEAILDKYVLRV---LERCWHARCLTCRDCGARLTDK--CFARNGHVFCKDDFFK- 164
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
Y R FGTKC C V RA+ IYH+ CF
Sbjct: 165 ------------------------YGRRFGTKCAGCGQGLAPSQVVRRAQELIYHLTCFS 200
Query: 125 CVVCGKQLVPGDEFALRED-GLFCKDDHE 152
C +C +QL GDEF L ED L CK D+E
Sbjct: 201 CALCSRQLDTGDEFYLMEDRKLVCKPDYE 229
Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 5/99 (5%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCF-VRDGKTYCKRDYVSSE 65
C GCG + ++R A +L +H C CA C + LD + + D K CK DY ++
Sbjct: 173 CAGCGQGLAPSQVVRRAQELIYHLTCFSCALCSRQLDTGDEFYLMEDRKLVCKPDYEQAK 232
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNF 104
+ D DG KR + + E L +
Sbjct: 233 AKELADGGSI----DGDQPNKRPRTTITAKQLETLKLAY 267
>gi|326666245|ref|XP_001922131.3| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Danio
rerio]
Length = 396
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 68/147 (46%), Gaps = 31/147 (21%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C GC I D+++LRV +L WH C++CA C L C C
Sbjct: 59 VCAGCESPIADRFLLRVN-ELSWHETCVKCAVCRSALSGTCYC----------------- 100
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
RD YCK DY +LF KC C R + +MR ++YH+ CF C
Sbjct: 101 -------------RDRLLYCKHDYEKLFVRKCSACLQAIGRSELIMRVLGQVYHLGCFSC 147
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHE 152
C ++L GDEF L+E L C+ D+E
Sbjct: 148 CECERRLQRGDEFVLKEGQLLCRGDYE 174
>gi|432113616|gb|ELK35898.1| LIM/homeobox protein Lhx1 [Myotis davidii]
Length = 272
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 86/180 (47%), Gaps = 34/180 (18%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 4 CAGCKRPILDRFLLNVL-DRAWHVKCVQCCECKCNLTEKC-------------------- 42
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK YCK D+ R FGTKC C D V RA++K++H+ CF C+
Sbjct: 43 ----------FSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCM 92
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDHEGMDKSSNGENNNNNTNINNNLHNLNNEGSNSGK 185
+C KQL G+E + + E+ CK+D+ + SS + N+ ++ + +L+ + + +
Sbjct: 93 MCNKQLSTGEELYIIDENKFVCKEDY--LSNSSVAKENSLHSATTGSDPSLSPDSQDPSQ 150
>gi|348525932|ref|XP_003450475.1| PREDICTED: LIM/homeobox protein Lhx1-like [Oreochromis niloticus]
Length = 399
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 71/147 (48%), Gaps = 32/147 (21%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C C I D+++L+V D WH C++C +C L E C
Sbjct: 4 CASCEKPILDRFLLKVL-DRPWHIKCVQCCDCKCSLTEKC-------------------- 42
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK YCK D+ R FGTKC C D V RAK+K++H+ CF CV
Sbjct: 43 ----------FSREGKLYCKNDFFRKFGTKCAGCAQGILPSDLVRRAKSKVFHLNCFTCV 92
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDHE 152
+C KQL G+E + L E CK+D+E
Sbjct: 93 MCNKQLSTGEELYILDEFKFVCKEDYE 119
>gi|62020648|gb|AAH20470.1| LHX1 protein, partial [Homo sapiens]
Length = 260
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 86/180 (47%), Gaps = 34/180 (18%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 4 CAGCKRPILDRFLLNVL-DRAWHVKCVQCCECKCNLTEKC-------------------- 42
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK YCK D+ R FGTKC C D V RA++K++H+ CF C+
Sbjct: 43 ----------FSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCM 92
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDHEGMDKSSNGENNNNNTNINNNLHNLNNEGSNSGK 185
+C KQL G+E + + E+ CK+D+ + SS + N+ ++ + +L+ + + +
Sbjct: 93 MCNKQLSTGEELYIIDENKFVCKEDY--LSNSSVAKENSLHSATTGSDPSLSPDSQDPSQ 150
>gi|321454677|gb|EFX65838.1| hypothetical protein DAPPUDRAFT_13685 [Daphnia pulex]
Length = 266
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 75/161 (46%), Gaps = 31/161 (19%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C GCG +I D+Y L VA D WH+ CLRC EC + LD +CF R + Y
Sbjct: 1 ICAGCGFKIVDRYYL-VAVDKAWHSECLRCDECRRPLDTALSCFARQSRIY--------- 50
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCF 123
C+ DY RLFG + C KC + ++ VMR + ++H +CF
Sbjct: 51 -------------------CREDYNRLFGGRKQCAKCCETLQPDELVMRGREHLFHTRCF 91
Query: 124 CCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNN 164
C VC L+ G F + +FC+ ++ + +G N
Sbjct: 92 SCHVCQTHLIKGSTFGMVGALIFCQQHYQPGSSAPSGFNGQ 132
>gi|449479889|ref|XP_004177057.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx1
[Taeniopygia guttata]
Length = 419
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 81/169 (47%), Gaps = 40/169 (23%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 4 CAGCKRPILDRFLLNVL-DRAWHVKCVQCCECKCNLTEKC-------------------- 42
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK YCK D+ R FGTKC C D V RA++K++H+ CF C+
Sbjct: 43 ----------FSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCM 92
Query: 127 VCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNNTNINNNLHN 175
+C KQL G+E L+ D+++ +DK NN+NT N+LH+
Sbjct: 93 MCNKQLSTGEE-------LYIIDENKFVDKED--YLNNSNTAKENSLHS 132
>gi|56694840|gb|AAW23082.1| Islet [Oikopleura dioica]
Length = 381
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 71/147 (48%), Gaps = 28/147 (19%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C C G+I D + +V PD +H CL+C+EC C+ +D +
Sbjct: 43 VCHSCRGKIDDAFSWQVHPDYSFHPHCLKCSEC--------GCYFQDATS---------- 84
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
CF+++ YCK DY RL+ C KC+ + D V + KN +HV CF C
Sbjct: 85 ----------CFMKNELAYCKEDYERLYMEHCAKCDHALQPTDLVHKVKNCTFHVDCFSC 134
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHE 152
C + LV GDEF L E LFC+ HE
Sbjct: 135 SSCVRVLVSGDEFLLIETRLFCRPCHE 161
>gi|348513701|ref|XP_003444380.1| PREDICTED: LIM/homeobox protein Lhx6-like [Oreochromis niloticus]
Length = 375
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 73/149 (48%), Gaps = 29/149 (19%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
LC CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 96 LCASCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 127
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L ++ +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 128 -RTSLRQHSSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 186
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGM 154
C +QL G+EF L E+ + C+ ++ M
Sbjct: 187 YSCKRQLSTGEEFGLVEEKVLCRIHYDTM 215
>gi|157820803|ref|NP_001101818.1| LIM/homeobox protein Lhx4 [Rattus norvegicus]
gi|149058350|gb|EDM09507.1| LIM homeobox protein 4 (predicted), isoform CRA_b [Rattus
norvegicus]
Length = 329
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Query: 76 CFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPG 135
CF R G YCK D+ + FGTKC C V +A++ +YH+ CF C++C +QL G
Sbjct: 7 CFSRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATG 66
Query: 136 DEFALREDG-LFCKDDHEGM---DKSSNGENNNNNTNINNNLHNLNNEGSNSGK 185
DEF L EDG L CK+D+E D S G T L L N NS K
Sbjct: 67 DEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLKNAYKNSPK 120
>gi|313233722|emb|CBY09892.1| unnamed protein product [Oikopleura dioica]
Length = 403
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 71/147 (48%), Gaps = 28/147 (19%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C C G+I D + +V PD +H CL+C+EC C+ +D
Sbjct: 43 VCHSCRGKIDDAFSWQVHPDYSFHPHCLKCSEC--------GCYFQDA------------ 82
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
+CF+++ YCK DY RL+ C KC+ + D V + KN +HV CF C
Sbjct: 83 --------TSCFMKNELAYCKEDYERLYMEHCAKCDHALQPTDLVHKVKNCTFHVDCFSC 134
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHE 152
C + LV GDEF L E LFC+ HE
Sbjct: 135 SSCVRVLVSGDEFLLIETRLFCRPCHE 161
>gi|225708480|gb|ACO10086.1| LIM domain transcription factor LMO4 [Osmerus mordax]
Length = 159
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 70/149 (46%), Gaps = 30/149 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCGG+I D+++L + + WH CL+C+ CH
Sbjct: 16 CAGCGGKIGDRFLL-YSMERYWHTRCLKCSCCHA-------------------------- 48
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFG--TKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
Q D +C+ + G C+ DY+RLFG C C + + VMRA+ +YH++CF
Sbjct: 49 -QLGDIGTSCYSKGGMILCRSDYIRLFGHSGACSACGQSIPANEMVMRAQGNVYHLKCFS 107
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEG 153
C C +LVPGD F +FC+ D G
Sbjct: 108 CATCRNRLVPGDRFHYVNGTIFCEHDRPG 136
>gi|148707455|gb|EDL39402.1| LIM homeobox protein 4, isoform CRA_a [Mus musculus]
Length = 329
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Query: 76 CFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPG 135
CF R G YCK D+ + FGTKC C V +A++ +YH+ CF C++C +QL G
Sbjct: 7 CFSRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATG 66
Query: 136 DEFALREDG-LFCKDDHEGM---DKSSNGENNNNNTNINNNLHNLNNEGSNSGK 185
DEF L EDG L CK+D+E D S G T L L N NS K
Sbjct: 67 DEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLKNAYKNSPK 120
>gi|157119548|ref|XP_001659418.1| lim homeobox protein [Aedes aegypti]
gi|108875286|gb|EAT39511.1| AAEL008685-PA [Aedes aegypti]
Length = 345
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 70/147 (47%), Gaps = 30/147 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCG I D+Y L VA D WH CLRC C C
Sbjct: 16 CAGCGISIRDRYYLLVA-DRAWHNQCLRC----------CKCLAN--------------- 49
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK-CEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L+ +C+ R+G YCK DY R F ++ C +C + VMRAK+ I+HV CF C
Sbjct: 50 ---LETELSCYAREGNIYCKDDYYRHFSSRRCARCGSGISASELVMRAKDLIFHVNCFSC 106
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHE 152
+CG+ L GD +R+ +FC + ++
Sbjct: 107 TICGQLLRGGDTAGIRDGRIFCGEHYD 133
>gi|47206717|emb|CAG12297.1| unnamed protein product [Tetraodon nigroviridis]
Length = 137
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 69/149 (46%), Gaps = 30/149 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCGG+I D+++L + + WH CLRC+ CH
Sbjct: 3 CAGCGGRIADRFLL-FSMERYWHTRCLRCSCCHA-------------------------- 35
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFG--TKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
Q + +C+ R G C+ DY RLFG C C + VMRA+ +YH++CF
Sbjct: 36 -QLGALSRSCYSRGGLILCRDDYARLFGHAGACGACGQTIPPSEMVMRAQGSVYHLKCFA 94
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEG 153
C C +LVPGD F +FC+ DH G
Sbjct: 95 CATCRHRLVPGDRFHYVNGSVFCEQDHPG 123
>gi|351696280|gb|EHA99198.1| LIM/homeobox protein Lhx8 [Heterocephalus glaber]
Length = 348
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 78/161 (48%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V L WH CL C+ C
Sbjct: 66 VCNSCGLEIVDKYLLKVN-GLCWHVRCLSCSVC--------------------------- 97
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C+++D +CK DY R +GT+C +C + D+V RAK +YH+ CF C
Sbjct: 98 -RTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFAC 156
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EFAL E+ + C+ ++ M + E N N
Sbjct: 157 FSCKRQLSTGEEFALVEEKVLCRVHYDFMLDNLKREVENGN 197
>gi|62751505|ref|NP_001015822.1| LIM domain transcription factor LMO4.1 [Xenopus (Silurana)
tropicalis]
gi|82194932|sp|Q5FVB2.1|LMO41_XENTR RecName: Full=LIM domain transcription factor LMO4.1; AltName:
Full=LIM domain only protein 4.1; Short=LMO-4.1
gi|58475879|gb|AAH90104.1| LIM domain only 4 [Xenopus (Silurana) tropicalis]
Length = 167
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 70/148 (47%), Gaps = 30/148 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCGG+I D+++L + + WH CL+C+ C L E T
Sbjct: 24 CAGCGGKIADRFLL-YSMERYWHTRCLKCSCCQAQLGEIGT------------------- 63
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ + G C+ DY+RLFG+ C C + + VMRA+ +YH++CF
Sbjct: 64 --------SCYTKSGMILCRNDYIRLFGSSGACSACGQSIPASEMVMRAQGSVYHLKCFT 115
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C C +LVPGD F +FC+ D
Sbjct: 116 CATCRNRLVPGDRFHYVNGAIFCEHDRP 143
>gi|410920794|ref|XP_003973868.1| PREDICTED: LIM domain transcription factor LMO4-like [Takifugu
rubripes]
Length = 271
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 69/146 (47%), Gaps = 30/146 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCGG+I D+++L + WH+ CL+C+ C L E T
Sbjct: 23 CAGCGGKIADRFLLYTM-ESYWHSRCLKCSCCQAQLGEIGT------------------- 62
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ + G C+ DY+RLFG C C + + VMRA+ +YH++CF
Sbjct: 63 --------SCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFT 114
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDD 150
C C +LVPGD F LFC+ D
Sbjct: 115 CSTCRNRLVPGDRFHYVNGSLFCEHD 140
>gi|148225925|ref|NP_001084128.1| LIM/homeobox protein Lhx1 [Xenopus laevis]
gi|267419|sp|P29674.1|LHX1_XENLA RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein Lim-1; Short=Xlim1;
Short=x-Lhx1; Short=xLIM-1
gi|64830|emb|CAA45353.1| homeobox protein [Xenopus laevis]
gi|213623130|gb|AAI69338.1| Homeobox protein [Xenopus laevis]
gi|213623134|gb|AAI69340.1| Homeobox protein [Xenopus laevis]
Length = 403
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 84/182 (46%), Gaps = 41/182 (22%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 4 CAGCERPILDRFLLNVL-DRAWHVKCVQCCECKCNLTEKC-------------------- 42
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK YCK D+ R FGTKC C D V RA++K++H+ CF C+
Sbjct: 43 ----------FSREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCM 92
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDHEGMDKSSNGENNNNNTNINNNLHNLNNEGSNSGK 185
+C KQL G+E + + E+ CK+D+ NNNN N+ + ++ S S +
Sbjct: 93 MCNKQLSTGEELYIIDENKFVCKEDY---------LNNNNAAKENSFISVTGSDPSLSPE 143
Query: 186 IQ 187
Q
Sbjct: 144 SQ 145
>gi|147900853|ref|NP_001079705.1| LIM domain transcription factor LMO4-B [Xenopus laevis]
gi|82210060|sp|Q801P0.1|LMO4B_XENLA RecName: Full=LIM domain transcription factor LMO4-B; AltName:
Full=LIM domain only protein 4-B; Short=LMO-4-B
gi|29126820|gb|AAH48020.1| Lmo4-b protein [Xenopus laevis]
Length = 171
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 69/148 (46%), Gaps = 30/148 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCGG+I D+++L + D WH CL+C+ C L E T
Sbjct: 24 CAGCGGKIADRFLL-YSMDRYWHTRCLKCSCCQAQLGEIGT------------------- 63
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ + G C+ DY+RLFG C C + + VMRA+ +YH++CF
Sbjct: 64 --------SCYTKSGMILCRNDYIRLFGNSGACNACGQSIPASEMVMRAQGSVYHLKCFT 115
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C C +LVPGD F +FC+ D
Sbjct: 116 CATCRNRLVPGDRFHYVNGTIFCEHDRP 143
>gi|348505058|ref|XP_003440078.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like
[Oreochromis niloticus]
Length = 361
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 74/165 (44%), Gaps = 33/165 (20%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R ++C GC I D+++LRV L WH C+RCA C L +C
Sbjct: 13 RRAVCAGCHRLIRDRFLLRVTDGL-WHEDCVRCAACGDALTNSC---------------- 55
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQC 122
F+RD K YCKRDY LF +C C + VMRA ++H++C
Sbjct: 56 --------------FLRDRKLYCKRDYADLFAVRCAGCTEAISPAELVMRAGAAVFHLRC 101
Query: 123 FCCVVCGKQLVPGDEFALREDGLFCKDD--HEGMDKSSNGENNNN 165
F C VC +L GD LRE L C + H+ + S+ E +
Sbjct: 102 FTCSVCSCRLQTGDRCVLREGQLLCAREGYHQCLASPSSSETGKS 146
>gi|334327218|ref|XP_001378455.2| PREDICTED: LIM/homeobox protein Lhx5-like [Monodelphis domestica]
Length = 303
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 79/168 (47%), Gaps = 32/168 (19%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 5 CAGCERPILDRFLLNVL-DRAWHIKCVQCCECKCNLTEKC-------------------- 43
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK YCK D+ R FGTKC C D V +A++K++H+ CF C+
Sbjct: 44 ----------FSREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCM 93
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDHEGMDKSSNGENNNNNTNINNNL 173
VC KQL G+E + + E+ CK+D+ G N+ ++ + +L
Sbjct: 94 VCNKQLSTGEELYIIDENKFVCKEDYLNSPSVKEGSLNSVSSCTDRSL 141
>gi|410923575|ref|XP_003975257.1| PREDICTED: LIM/homeobox protein Lhx6-like [Takifugu rubripes]
Length = 310
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 72/148 (48%), Gaps = 29/148 (19%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 32 CASCGMEIQDRYLLKVN-NLNWHLGCLECSVC---------------------------- 62
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
L ++ +C+V++ + +CK DY FGTKC +C D+V RA+ +YH+ CF C
Sbjct: 63 RASLRQHNSCYVKNKEIFCKLDYFSRFGTKCAQCGRQVYASDWVRRARGSVYHLACFACF 122
Query: 127 VCGKQLVPGDEFALREDGLFCKDDHEGM 154
C +QL G+EF L E + C+ ++ M
Sbjct: 123 SCKRQLSTGEEFGLVEGRVLCRSHYDIM 150
>gi|351696664|gb|EHA99582.1| LIM/homeobox protein Lhx1 [Heterocephalus glaber]
Length = 406
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 80/170 (47%), Gaps = 42/170 (24%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 4 CAGCKRPILDRFLLNVL-DRAWHVKCVQCCECKCNLTEKC-------------------- 42
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK YCK D+ R FGTKC C D V RA++K++H+ CF C+
Sbjct: 43 ----------FSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCM 92
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDHEGMDKSSNGENNNNNTNINNNLHN 175
+C KQL G+E + + E+ CK+D+ +N+N N+LH+
Sbjct: 93 MCNKQLSTGEELYIIDENKFVCKEDYL----------SNSNVAKENSLHS 132
>gi|402874959|ref|XP_003901290.1| PREDICTED: insulin gene enhancer protein ISL-2 [Papio anubis]
Length = 350
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 91 RLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDD 150
RLFG KC KC + F D VMRA++ +YH++CF C VC +QL+PGDEF+LRE L C+ D
Sbjct: 74 RLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRAD 133
Query: 151 HE-GMDKSSNGENNNNNTNINNNLHNLNNEGSN 182
H +++++ G + + +L + GS
Sbjct: 134 HGLLLERAAAGSPRSPGPLPGSRGLHLPDAGSG 166
>gi|148224772|ref|NP_001079179.1| LIM domain transcription factor LMO4-A [Xenopus laevis]
gi|82211818|sp|Q8AW92.1|LMO4A_XENLA RecName: Full=LIM domain transcription factor LMO4-A; AltName:
Full=LIM domain only protein 4-A; Short=LMO-4-A;
AltName: Full=Xlmo4
gi|26986407|emb|CAD54077.1| lmo4 protein [Xenopus laevis]
gi|83318438|gb|AAI08586.1| Lmo4-A protein [Xenopus laevis]
Length = 171
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 69/148 (46%), Gaps = 30/148 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCGG+I D+++L + D WH CL+C+ C L E T
Sbjct: 24 CAGCGGKIGDRFLL-YSMDRYWHTRCLKCSCCQAQLGEIGT------------------- 63
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ + G C+ DY+RLFG C C + + VMRA+ +YH++CF
Sbjct: 64 --------SCYTKSGMILCRNDYIRLFGNSGACNACGQSIPASEMVMRAQGSVYHLKCFT 115
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C C +LVPGD F +FC+ D
Sbjct: 116 CATCRNRLVPGDRFHYVNGTIFCEHDRP 143
>gi|47210680|emb|CAF90424.1| unnamed protein product [Tetraodon nigroviridis]
Length = 166
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 69/148 (46%), Gaps = 30/148 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCGG+I D+++L + WH+ CL+C+ C L E T
Sbjct: 24 CAGCGGKIADRFLLYTM-ESYWHSRCLKCSCCQAQLGEIGT------------------- 63
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ + G C+ DY+RLFG C C + + VMRA+ +YH++CF
Sbjct: 64 --------SCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFT 115
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C C +LVPGD F LFC+ D
Sbjct: 116 CSTCRNRLVPGDRFHYVNGSLFCEHDRP 143
>gi|395531962|ref|XP_003768042.1| PREDICTED: LIM/homeobox protein Lhx1 [Sarcophilus harrisii]
Length = 406
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 86/180 (47%), Gaps = 34/180 (18%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 4 CAGCKRPILDRFLLNVL-DRAWHVKCVQCCECKCNLTEKC-------------------- 42
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK YCK D+ R FGTKC C D V RA++K++H+ CF C+
Sbjct: 43 ----------FSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCM 92
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDHEGMDKSSNGENNNNNTNINNNLHNLNNEGSNSGK 185
+C KQL G+E + + E+ CK+D+ + SS + N+ ++ + +L+ + + +
Sbjct: 93 MCNKQLSTGEELYIIDENKFVCKEDY--LSNSSAAKENSLHSATTGSDPSLSPDSQDPSQ 150
>gi|195998992|ref|XP_002109364.1| hypothetical protein TRIADDRAFT_20649 [Trichoplax adhaerens]
gi|190587488|gb|EDV27530.1| hypothetical protein TRIADDRAFT_20649 [Trichoplax adhaerens]
Length = 208
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 74/147 (50%), Gaps = 32/147 (21%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L+VA DL WH CLRC +C Q L +
Sbjct: 12 CTGCNQLIQDKFLLKVADDL-WHEDCLRCYKCTQPLSK---------------------- 48
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
+C+++D K YCK DY + FG KC+ CNL ++ V R YH+ C C+
Sbjct: 49 --------SCYIKDHKLYCKEDYDKRFGRKCQGCNLGILPDEMVYRLHGSCYHINCLLCI 100
Query: 127 VCGKQLVPGDEFALREDG-LFCKDDHE 152
VC +Q GD++ + ++G CK+D++
Sbjct: 101 VCSRQFKVGDKYYISDEGKPICKEDYD 127
>gi|47086665|ref|NP_997854.1| LIM domain transcription factor LMO4 [Danio rerio]
gi|22652064|gb|AAN03596.1|AF398515_1 LIM-only 4 [Danio rerio]
Length = 165
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 69/148 (46%), Gaps = 30/148 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCGG+I D+++L A D WH+ CL+C+ C L E T
Sbjct: 23 CAGCGGKIADRFLL-YAMDSYWHSRCLKCSCCQAQLGEIGT------------------- 62
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFC 124
C+ + G C+ DY+RLFG C C + + VMRA+ +YH++CF
Sbjct: 63 --------FCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFT 114
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C C +LVPGD F LFC+ D
Sbjct: 115 CSTCRNRLVPGDRFHYINGSLFCEHDRP 142
>gi|348532229|ref|XP_003453609.1| PREDICTED: LIM/homeobox protein Lhx1-like [Oreochromis niloticus]
Length = 407
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 72/146 (49%), Gaps = 32/146 (21%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 4 CAGCERPILDRFLLNVL-DRAWHVKCVQCCECKCNLTEKC-------------------- 42
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+G+ YCK D+ R FGTKC C+ D V RA++K++H+ CF C+
Sbjct: 43 ----------FSREGRLYCKNDFFRRFGTKCGGCSQGISPNDLVRRARSKVFHLNCFTCM 92
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDH 151
+C KQL G+E + + E+ CKDD+
Sbjct: 93 MCNKQLSTGEELYIIDENKFVCKDDY 118
>gi|332025158|gb|EGI65338.1| LIM homeobox transcription factor 1-beta [Acromyrmex echinatior]
Length = 400
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 69/149 (46%), Gaps = 32/149 (21%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GCG I D+Y++RVA + +H CL C C L
Sbjct: 54 TICAGCGRTIADKYVMRVA-ERNYHEECLSCTACGAMLSH-------------------- 92
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRA-KNKIYHVQCF 123
+CF+RD K YC+ DY R+FG KC +C D VMR I+HV+CF
Sbjct: 93 ----------SCFIRDLKLYCRSDYERIFGVKCARCMEKISCSDLVMRPVSGLIFHVECF 142
Query: 124 CCVVCGKQLVPGDEFALREDGLFCKDDHE 152
C +CG+ L G + LR+ C+ D E
Sbjct: 143 ACCMCGQPLPRGAHYILRQGQPICRRDFE 171
Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 9/93 (9%)
Query: 19 ILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV------SSEKNQFLDE 72
++R L +H C C C Q L +R G+ C+RD+ S + + LDE
Sbjct: 128 VMRPVSGLIFHVECFACCMCGQPLPRGAHYILRQGQPICRRDFEHELFLNSPQDDDLLDE 187
Query: 73 NCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFK 105
N RDG+ KR L + + +F+
Sbjct: 188 NRP---RDGRRGPKRPRTILTSAQRRQFKASFE 217
>gi|348531406|ref|XP_003453200.1| PREDICTED: LIM/homeobox protein Lhx8-like [Oreochromis niloticus]
Length = 386
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 74/150 (49%), Gaps = 29/150 (19%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 104 PVCTSCGLEIVDRYLLKVN-NLCWHVRCLSCSVC-------------------------- 136
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
L + +C++RD + +CK DY R +GT+C +C N D+V RA+ +H+ CF
Sbjct: 137 --KTSLGRHVSCYIRDKEVFCKLDYFRRYGTRCARCGRNIHSSDWVRRARGSTFHLACFS 194
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
C C +QL G+E L E+ +FC+ ++ M
Sbjct: 195 CTSCKRQLSTGEECGLLENRVFCRPHYDIM 224
>gi|195012851|ref|XP_001983760.1| GH15398 [Drosophila grimshawi]
gi|193897242|gb|EDV96108.1| GH15398 [Drosophila grimshawi]
Length = 618
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 68/143 (47%), Gaps = 32/143 (22%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
LC GCG +IHD+Y++ V D WH CL C C
Sbjct: 254 LCEGCGQKIHDRYLMNVG-DANWHEQCLACCYCG-------------------------- 286
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRA-KNKIYHVQCFC 124
L + TC+VR+ K YCK+DY RLFG KC C ++ VMR N ++H+ CF
Sbjct: 287 ----LQLHHTCYVRNSKLYCKQDYDRLFGVKCAACCHAILPQELVMRPISNYVFHLPCFV 342
Query: 125 CVVCGKQLVPGDEFALREDGLFC 147
C C L G++F LR+ LFC
Sbjct: 343 CYACRLPLQKGEQFMLRDGQLFC 365
>gi|405976917|gb|EKC41395.1| LIM/homeobox protein Awh [Crassostrea gigas]
Length = 280
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 68/141 (48%), Gaps = 29/141 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+Y L V WH CLRC C C+
Sbjct: 52 CEGCQEVIADRYFLHVNGAC-WHTDCLRCCVC-------CSS------------------ 85
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
L++ +CFV+D YC+RDY+ FGTKC KC + D+V RA+ +YH+ CF C
Sbjct: 86 ---LEQEESCFVKDENIYCRRDYISEFGTKCSKCYRKIQATDWVRRARENVYHLACFACD 142
Query: 127 VCGKQLVPGDEFALREDGLFC 147
C +QL G+EFAL D L C
Sbjct: 143 SCQRQLSTGEEFALSGDQLLC 163
>gi|395845905|ref|XP_003795658.1| PREDICTED: LIM/homeobox protein Lhx1 [Otolemur garnettii]
Length = 407
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 86/180 (47%), Gaps = 34/180 (18%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 4 CAGCKRPILDRFLLNVL-DRAWHVKCVQCCECKCNLTEKC-------------------- 42
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK YCK D+ R FGTKC C D V RA++K++H+ CF C+
Sbjct: 43 ----------FSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCM 92
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDHEGMDKSSNGENNNNNTNINNNLHNLNNEGSNSGK 185
+C KQL G+E + + E+ CK+D+ + SS + N+ ++ + +L+ + + +
Sbjct: 93 MCNKQLSTGEELYIIDENKFVCKEDY--LSNSSVAKENSLHSATTGSDPSLSPDSQDPSQ 150
>gi|322785895|gb|EFZ12514.1| hypothetical protein SINV_13953 [Solenopsis invicta]
Length = 144
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 73/160 (45%), Gaps = 34/160 (21%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GCG I D+Y++RVA + +H CL C C L
Sbjct: 16 TICAGCGRTIADKYVMRVA-ERNYHEECLSCTACGAMLSH-------------------- 54
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMR-AKNKIYHVQCF 123
+CF+RD K YC+ DY R+FG KC +C D VMR I+HV+CF
Sbjct: 55 ----------SCFIRDLKLYCRTDYERIFGVKCARCMEKISCSDLVMRPVSGLIFHVECF 104
Query: 124 CCVVCGKQLVPGDEFALREDGLFCKDD--HEGMDKSSNGE 161
C +CG+ L G + LR+ C+ D HE S GE
Sbjct: 105 ACCMCGQSLPRGAHYILRQGQPICRRDFEHELFLNSPQGE 144
>gi|229619776|dbj|BAH58087.1| LIM homeobox protein 1 [Nematostella vectensis]
Length = 358
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 71/146 (48%), Gaps = 32/146 (21%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L+V D WHA C++C++C L E C
Sbjct: 5 CAGCQLPIADKFLLKVL-DGVWHAQCVQCSDCKCPLTERC-------------------- 43
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK +CK D+ R +GTKC C+ D V RAK+ ++HV CF C
Sbjct: 44 ----------FSREGKLFCKTDFYRRYGTKCSGCDQGISPNDMVRRAKHLVFHVDCFVCS 93
Query: 127 VCGKQLVPGDEFALREDGLF-CKDDH 151
C +Q+ GDE DG F C+DD+
Sbjct: 94 YCKRQITTGDELYYIGDGSFICRDDY 119
>gi|242011268|ref|XP_002426377.1| LIM domain transcription factor LMO4, putative [Pediculus humanus
corporis]
gi|212510454|gb|EEB13639.1| LIM domain transcription factor LMO4, putative [Pediculus humanus
corporis]
Length = 256
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 76/181 (41%), Gaps = 40/181 (22%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
L +C GCGG+I ++++L A D WH CL+C+ CH L
Sbjct: 94 LKICGGCGGKIVERFLLH-ALDRYWHNGCLKCSCCHAMLA-------------------- 132
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFG--TKCEKCNLNFKREDFVMRA-------- 113
D +CF + G CK DY RLFG C C +FVMRA
Sbjct: 133 -------DIGSSCFTKAGMILCKTDYARLFGNTGACSACGQTIPPNEFVMRAGAGAPGPH 185
Query: 114 --KNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNNTNINN 171
+ ++H++CF C CG QLV GD + L L C+ D + KS+ T +
Sbjct: 186 PQSHHVFHLKCFVCSKCGTQLVQGDRYYLLAGSLVCEQDWHKLLKSTGVPGAGGATTVRK 245
Query: 172 N 172
Sbjct: 246 G 246
>gi|74187870|dbj|BAE24561.1| unnamed protein product [Mus musculus]
Length = 406
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 85/180 (47%), Gaps = 34/180 (18%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+ +L V D WH C++C EC L E C
Sbjct: 4 CAGCKRPILDRLLLNVL-DRAWHVKCVQCCECKCNLTEKC-------------------- 42
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK YCK D+ R FGTKC C D V RA++K++H+ CF C+
Sbjct: 43 ----------FSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCM 92
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDHEGMDKSSNGENNNNNTNINNNLHNLNNEGSNSGK 185
+C KQL G+E + + E+ CK+D+ + SS + N+ N+ + +L+ + + +
Sbjct: 93 MCNKQLSTGEELYIIDENKFVCKEDY--LSNSSVAKENSLNSATTGSDPSLSPDSQDPSQ 150
>gi|196000228|ref|XP_002109982.1| hypothetical protein TRIADDRAFT_14836 [Trichoplax adhaerens]
gi|190588106|gb|EDV28148.1| hypothetical protein TRIADDRAFT_14836, partial [Trichoplax
adhaerens]
Length = 215
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 87/183 (47%), Gaps = 32/183 (17%)
Query: 7 CVGCGGQIHDQYILRVA-PDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
C GCG I DQ L + D +WH CLRC +C
Sbjct: 1 CAGCGRSIMDQEYLGIQKTDKKWHIQCLRCYDC--------------------------- 33
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
N+ LD++ +C+V+ G +C+ DY FG+ KC CN ++ VM+A+ YH CF
Sbjct: 34 -NEPLDKDQSCYVKQGNIFCRTDYFNRFGSIKCPTCNSGISPKEHVMKAREYAYHCSCFI 92
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEGM--DKSSNGENNNNNTNINNNLHNLNNEGSN 182
C C + L G+EFA+R L+CK+ + + D + +N +N+ N++ N N+
Sbjct: 93 CHTCNRLLKTGEEFAMRGCKLYCKEHFQSITSDHRHSHHSNKDNSGENHDSSNSNDITDE 152
Query: 183 SGK 185
G+
Sbjct: 153 HGR 155
>gi|410904301|ref|XP_003965630.1| PREDICTED: LIM/homeobox protein Lhx6-like [Takifugu rubripes]
Length = 373
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 72/148 (48%), Gaps = 29/148 (19%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 95 CASCGQEILDRYLLKVN-NLIWHVRCLECSVC---------------------------- 125
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
L ++ +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 126 RTSLRQHSSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACY 185
Query: 127 VCGKQLVPGDEFALREDGLFCKDDHEGM 154
C +QL G+EF L E+ + C+ ++ M
Sbjct: 186 SCKRQLSTGEEFGLVEEKVLCRIHYDTM 213
>gi|47223723|emb|CAF99332.1| unnamed protein product [Tetraodon nigroviridis]
Length = 381
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 29/149 (19%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 45 VCASCGQEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 76
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L ++ +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 77 -RTSLRQHSSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 135
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGM 154
C +QL G+EF L E+ + C+ ++ M
Sbjct: 136 YSCKRQLSTGEEFGLVEEKVLCRIHYDTM 164
>gi|158292635|ref|XP_314022.4| AGAP005138-PA [Anopheles gambiae str. PEST]
gi|157017084|gb|EAA44525.4| AGAP005138-PA [Anopheles gambiae str. PEST]
Length = 456
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 78/149 (52%), Gaps = 32/149 (21%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
SLC C G I D+YI++V D+ +H CL+C C L +CF+RDGK
Sbjct: 148 SLCGQCCGPICDRYIMKVV-DITYHERCLQCTSCSIRLMH--SCFMRDGK---------- 194
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFG-TKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
YC+ DY RL+G +C C ++ VMRA + ++H++CF
Sbjct: 195 ------------------LYCRFDYERLYGRNRCLGCGEKIGADELVMRALDNVFHLKCF 236
Query: 124 CCVVCGKQLVPGDEFALREDGLFCKDDHE 152
CVVCG +L GD++ +++ LFC+ D+E
Sbjct: 237 ICVVCGVRLQKGDQYVIKQSQLFCRPDYE 265
>gi|432852914|ref|XP_004067448.1| PREDICTED: insulin gene enhancer protein ISL-3-like [Oryzias
latipes]
Length = 284
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 57/82 (69%)
Query: 91 RLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDD 150
RLFG KC KCNL F D VMRA++ +YH++CF C +C +QL+PGDEF+L+E L C+ D
Sbjct: 29 RLFGIKCAKCNLGFSSSDLVMRARDNVYHIECFRCSMCSRQLLPGDEFSLQEGDLLCRAD 88
Query: 151 HEGMDKSSNGENNNNNTNINNN 172
H + + ++ + + +I++N
Sbjct: 89 HSMLLERTSAGSPISPGHIHSN 110
>gi|5738954|dbj|BAA83420.1| LIM-homeodomain (LHX) protein 6.1b [Mus musculus]
Length = 348
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 69 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 100
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + YCK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 101 -RTSLRQQNSCYIKNKEIYCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 159
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 160 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKKAAENGN 200
>gi|549846|gb|AAA21644.1| LIM domain transcription factor LIM-1 [Homo sapiens]
Length = 404
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 86/180 (47%), Gaps = 34/180 (18%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 4 CAGCKRPILDRFLLNVL-DRAWHVKCVQCCECKCNLTEKC-------------------- 42
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK YCK D+ R FGTKC C D V RA++K++H+ CF C+
Sbjct: 43 ----------FSREGKLYCKNDFFRCFGTKCAGCRQGISPSDLVRRARSKVFHLNCFTCM 92
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDHEGMDKSSNGENNNNNTNINNNLHNLNNEGSNSGK 185
+C KQL G+E + + E+ CK+D+ + SS + N+ ++ + +L+ + + +
Sbjct: 93 MCNKQLSTGEELYIIDENKFVCKEDY--LSNSSVAKENSLHSATTGSDPSLSPDSQDPSQ 150
>gi|301776020|ref|XP_002923422.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx1-like
[Ailuropoda melanoleuca]
Length = 405
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 86/180 (47%), Gaps = 34/180 (18%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 4 CAGCKRPILDRFLLNVL-DRAWHVKCVQCCECKCNLTEKC-------------------- 42
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK YCK D+ R FGTKC C D V RA++K++H+ CF C+
Sbjct: 43 ----------FSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCM 92
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDHEGMDKSSNGENNNNNTNINNNLHNLNNEGSNSGK 185
+C KQL G+E + + E+ CK+D+ + SS + N+ ++ + +L+ + + +
Sbjct: 93 MCNKQLSTGEELYIIDENKFVCKEDY--LSNSSVAKENSLHSATTGSDPSLSPDSQDPSQ 150
>gi|194390004|dbj|BAG60518.1| unnamed protein product [Homo sapiens]
Length = 301
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 34/167 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 4 CAGCKRPILDRFLLNVL-DRAWHVKCVQCCECKCNLTEKC-------------------- 42
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK YCK D+ R FGTKC C D V RA++K++H+ CF C+
Sbjct: 43 ----------FSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCM 92
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDHEGMDKSSNGENNNNNTNINNN 172
+C KQL G+E + + E+ CK+D+ + SS + N+ +++ + +
Sbjct: 93 MCNKQLSTGEELYIIDENKFVCKEDY--LSNSSVAKENSLHSDPSQD 137
>gi|148676721|gb|EDL08668.1| LIM homeobox protein 6, isoform CRA_b [Mus musculus]
Length = 380
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 101 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 132
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + YCK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 133 -RTSLRQQNSCYIKNKEIYCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 191
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 192 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 232
>gi|55846812|gb|AAV67410.1| LIM homeobox protein 1 [Macaca fascicularis]
Length = 403
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 86/180 (47%), Gaps = 34/180 (18%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 1 CAGCKRPILDRFLLNVL-DRAWHVKCVQCCECKCNLTEKC-------------------- 39
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK YCK D+ R FGTKC C D V RA++K++H+ CF C+
Sbjct: 40 ----------FSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCM 89
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDHEGMDKSSNGENNNNNTNINNNLHNLNNEGSNSGK 185
+C KQL G+E + + E+ CK+D+ + SS + N+ ++ + +L+ + + +
Sbjct: 90 MCNKQLSTGEELYIIDENKFVCKEDY--LSNSSVAKENSLHSATTGSDPSLSPDSQDPSQ 147
>gi|30410785|ref|NP_005559.2| LIM/homeobox protein Lhx1 [Homo sapiens]
gi|60416412|sp|P48742.2|LHX1_HUMAN RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein Lim-1; Short=hLim-1
gi|75517203|gb|AAI01675.1| LIM homeobox 1 [Homo sapiens]
gi|85565997|gb|AAI11937.1| LIM homeobox 1 [Homo sapiens]
gi|119577978|gb|EAW57574.1| LIM homeobox 1 [Homo sapiens]
gi|167773161|gb|ABZ92015.1| LIM homeobox 1 [synthetic construct]
gi|208966670|dbj|BAG73349.1| LIM homeobox 1 [synthetic construct]
Length = 406
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 86/180 (47%), Gaps = 34/180 (18%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 4 CAGCKRPILDRFLLNVL-DRAWHVKCVQCCECKCNLTEKC-------------------- 42
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK YCK D+ R FGTKC C D V RA++K++H+ CF C+
Sbjct: 43 ----------FSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCM 92
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDHEGMDKSSNGENNNNNTNINNNLHNLNNEGSNSGK 185
+C KQL G+E + + E+ CK+D+ + SS + N+ ++ + +L+ + + +
Sbjct: 93 MCNKQLSTGEELYIIDENKFVCKEDY--LSNSSVAKENSLHSATTGSDPSLSPDSQDPSQ 150
>gi|296201935|ref|XP_002748333.1| PREDICTED: LIM/homeobox protein Lhx1 [Callithrix jacchus]
Length = 406
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 86/180 (47%), Gaps = 34/180 (18%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 4 CAGCKRPILDRFLLNVL-DRAWHVKCVQCCECKCNLTEKC-------------------- 42
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK YCK D+ R FGTKC C D V RA++K++H+ CF C+
Sbjct: 43 ----------FSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCM 92
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDHEGMDKSSNGENNNNNTNINNNLHNLNNEGSNSGK 185
+C KQL G+E + + E+ CK+D+ + SS + N+ ++ + +L+ + + +
Sbjct: 93 MCNKQLSTGEELYIIDENKFVCKEDY--LSNSSVAKENSLHSATTGSDPSLSPDSQDPSQ 150
>gi|327282632|ref|XP_003226046.1| PREDICTED: LIM/homeobox protein Lhx5-like [Anolis carolinensis]
Length = 400
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 70/146 (47%), Gaps = 32/146 (21%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 5 CAGCERPILDRFLLNVL-DRAWHIKCVQCCECKCNLTEKC-------------------- 43
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK YCK D+ R FGTKC C D V +A+ K++H+ CF C+
Sbjct: 44 ----------FSREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARGKVFHLNCFTCM 93
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDH 151
VC KQL G+E + + E+ CK+D+
Sbjct: 94 VCNKQLSTGEELYIIDENKFVCKEDY 119
>gi|345492348|ref|XP_001601137.2| PREDICTED: LIM/homeobox protein Awh-like [Nasonia vitripennis]
Length = 300
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 81/157 (51%), Gaps = 33/157 (21%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCG +H++ ++ V WH+ CL+C C
Sbjct: 91 CGGCGENVHERTVICVGGRT-WHSKCLKCCAC---------------------------- 121
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
++ L + +CF+R+ + YC++DYV FG +C KC+ + D+V RA++++YH+ CF C
Sbjct: 122 SKPLHDQHSCFLRNTQIYCRQDYVINFGARCAKCSRSIGSGDWVRRARDRVYHLACFACD 181
Query: 127 VCGKQLVPGDEFALREDGLFCK----DDHEGMDKSSN 159
C +QL G++FAL + L CK D EG + SS+
Sbjct: 182 ACSRQLSTGEQFALIDAKLLCKAHYLDAVEGNNTSSS 218
>gi|431890885|gb|ELK01764.1| LIM/homeobox protein Lhx1 [Pteropus alecto]
Length = 406
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 86/180 (47%), Gaps = 34/180 (18%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 4 CAGCKRPILDRFLLNVL-DRAWHVKCVQCCECKCNLTEKC-------------------- 42
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK YCK D+ R FGTKC C D V RA++K++H+ CF C+
Sbjct: 43 ----------FSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCM 92
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDHEGMDKSSNGENNNNNTNINNNLHNLNNEGSNSGK 185
+C KQL G+E + + E+ CK+D+ + SS + N+ ++ + +L+ + + +
Sbjct: 93 MCNKQLSTGEELYIIDENKFVCKEDY--LSNSSVAKENSLHSATTGSDPSLSPDSQDPSQ 150
>gi|157428018|ref|NP_001098917.1| LIM/homeobox protein Lhx1 [Bos taurus]
gi|358417202|ref|XP_003583582.1| PREDICTED: LIM/homeobox protein Lhx1-like [Bos taurus]
gi|157279406|gb|AAI53213.1| LHX1 protein [Bos taurus]
gi|296477035|tpg|DAA19150.1| TPA: LIM homeobox protein 1 [Bos taurus]
gi|440905066|gb|ELR55504.1| LIM/homeobox protein Lhx1 [Bos grunniens mutus]
Length = 406
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 86/180 (47%), Gaps = 34/180 (18%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 4 CAGCKRPILDRFLLNVL-DRAWHVKCVQCCECKCNLTEKC-------------------- 42
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK YCK D+ R FGTKC C D V RA++K++H+ CF C+
Sbjct: 43 ----------FSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCM 92
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDHEGMDKSSNGENNNNNTNINNNLHNLNNEGSNSGK 185
+C KQL G+E + + E+ CK+D+ + SS + N+ ++ + +L+ + + +
Sbjct: 93 MCNKQLSTGEELYIIDENKFVCKEDY--LSNSSVAKENSLHSATTGSDPSLSPDSQDPSQ 150
>gi|76573889|ref|NP_001029088.1| LIM/homeobox protein Lhx1 [Pan troglodytes]
gi|297700651|ref|XP_002827352.1| PREDICTED: LIM/homeobox protein Lhx1 [Pongo abelii]
gi|311267821|ref|XP_003131754.1| PREDICTED: LIM/homeobox protein Lhx1-like [Sus scrofa]
gi|348567695|ref|XP_003469634.1| PREDICTED: LIM/homeobox protein Lhx1-like [Cavia porcellus]
gi|359320451|ref|XP_003639347.1| PREDICTED: LIM/homeobox protein Lhx1-like [Canis lupus familiaris]
gi|397494263|ref|XP_003818003.1| PREDICTED: LIM/homeobox protein Lhx1 [Pan paniscus]
gi|402899902|ref|XP_003912923.1| PREDICTED: LIM/homeobox protein Lhx1 [Papio anubis]
gi|403274736|ref|XP_003929119.1| PREDICTED: LIM/homeobox protein Lhx1 [Saimiri boliviensis
boliviensis]
gi|410980542|ref|XP_003996636.1| PREDICTED: LIM/homeobox protein Lhx1 [Felis catus]
gi|426348609|ref|XP_004041924.1| PREDICTED: LIM/homeobox protein Lhx1 [Gorilla gorilla gorilla]
gi|60389888|sp|Q5IS44.1|LHX1_PANTR RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein Lim-1
gi|60389889|sp|Q5IS89.1|LHX1_SAIBB RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein Lim-1
gi|56122252|gb|AAV74277.1| LIM homeobox protein 1 [Saimiri boliviensis]
gi|56122342|gb|AAV74322.1| LIM homeobox protein 1 [Pan troglodytes]
gi|355568607|gb|EHH24888.1| LIM/homeobox protein Lhx1 [Macaca mulatta]
gi|444720995|gb|ELW61755.1| LIM/homeobox protein Lhx1 [Tupaia chinensis]
Length = 406
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 86/180 (47%), Gaps = 34/180 (18%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 4 CAGCKRPILDRFLLNVL-DRAWHVKCVQCCECKCNLTEKC-------------------- 42
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK YCK D+ R FGTKC C D V RA++K++H+ CF C+
Sbjct: 43 ----------FSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCM 92
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDHEGMDKSSNGENNNNNTNINNNLHNLNNEGSNSGK 185
+C KQL G+E + + E+ CK+D+ + SS + N+ ++ + +L+ + + +
Sbjct: 93 MCNKQLSTGEELYIIDENKFVCKEDY--LSNSSVAKENSLHSATTGSDPSLSPDSQDPSQ 150
>gi|332258740|ref|XP_003278453.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx1 [Nomascus
leucogenys]
Length = 374
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 86/180 (47%), Gaps = 34/180 (18%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 4 CAGCKRPILDRFLLNVL-DRAWHVKCVQCCECKCNLTEKC-------------------- 42
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK YCK D+ R FGTKC C D V RA++K++H+ CF C+
Sbjct: 43 ----------FSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCM 92
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDHEGMDKSSNGENNNNNTNINNNLHNLNNEGSNSGK 185
+C KQL G+E + + E+ CK+D+ + SS + N+ ++ + +L+ + + +
Sbjct: 93 MCNKQLSTGEELYIIDENKFVCKEDY--LSNSSVAKENSLHSATTGSDPSLSPDSQDPSQ 150
>gi|291405647|ref|XP_002719296.1| PREDICTED: LIM homeobox protein 5 [Oryctolagus cuniculus]
Length = 406
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 86/180 (47%), Gaps = 34/180 (18%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 4 CAGCKRPILDRFLLNVL-DRAWHVKCVQCCECKCNLTEKC-------------------- 42
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK YCK D+ R FGTKC C D V RA++K++H+ CF C+
Sbjct: 43 ----------FSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCM 92
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDHEGMDKSSNGENNNNNTNINNNLHNLNNEGSNSGK 185
+C KQL G+E + + E+ CK+D+ + SS + N+ ++ + +L+ + + +
Sbjct: 93 MCNKQLSTGEELYIIDENKFVCKEDY--LSNSSVAKENSLHSATTGSDPSLSPDSQDPSQ 150
>gi|410915338|ref|XP_003971144.1| PREDICTED: LIM/homeobox protein Lhx1-like [Takifugu rubripes]
Length = 397
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 74/146 (50%), Gaps = 32/146 (21%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C C I D+++L+V D WH C++C +C CT SEK
Sbjct: 4 CTSCEKPILDRFLLKVL-DRPWHVKCVQCCDC------KCTL---------------SEK 41
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
CF R+GK YCK D+ R FGTKC+ C D V RAK+K++H+ CF C+
Sbjct: 42 ---------CFSREGKLYCKNDFFRRFGTKCDGCAQGILPSDLVRRAKSKVFHLNCFTCM 92
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDH 151
+C KQL G+E + L E CK+D+
Sbjct: 93 MCNKQLSTGEELYVLDEFKFVCKEDY 118
>gi|6678688|ref|NP_032524.1| LIM/homeobox protein Lhx1 [Mus musculus]
gi|94400804|ref|NP_665887.3| LIM/homeobox protein Lhx1 [Rattus norvegicus]
gi|354477124|ref|XP_003500772.1| PREDICTED: LIM/homeobox protein Lhx1-like [Cricetulus griseus]
gi|51702761|sp|P63007.1|LHX1_RAT RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein Lim-1; Short=Rlim
gi|51702763|sp|P63006.1|LHX1_MOUSE RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein Lim-1
gi|51702764|sp|P63008.1|LHX1_MESAU RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein LMX-2; AltName:
Full=Homeobox protein Lim-1
gi|2144068|pir||I58187 homeotic protein lim-1 - rat
gi|425217|emb|CAA81797.1| lim1 [Mus musculus]
gi|559636|gb|AAC60696.1| transcription factor [Rattus sp.]
gi|587463|emb|CAA57164.1| lmx2 [Mesocricetus auratus]
gi|4104801|gb|AAD02169.1| homeobox protein Lim1 [Mus musculus]
gi|62201098|gb|AAH92374.1| Lhx1 protein [Mus musculus]
gi|148683791|gb|EDL15738.1| LIM homeobox protein 1 [Mus musculus]
gi|149053699|gb|EDM05516.1| LIM homeobox protein 1 [Rattus norvegicus]
Length = 406
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 86/180 (47%), Gaps = 34/180 (18%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 4 CAGCKRPILDRFLLNVL-DRAWHVKCVQCCECKCNLTEKC-------------------- 42
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK YCK D+ R FGTKC C D V RA++K++H+ CF C+
Sbjct: 43 ----------FSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCM 92
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDHEGMDKSSNGENNNNNTNINNNLHNLNNEGSNSGK 185
+C KQL G+E + + E+ CK+D+ + SS + N+ ++ + +L+ + + +
Sbjct: 93 MCNKQLSTGEELYIIDENKFVCKEDY--LSNSSVAKENSLHSATTGSDPSLSPDSQDPSQ 150
>gi|195376257|ref|XP_002046913.1| GJ13148 [Drosophila virilis]
gi|194154071|gb|EDW69255.1| GJ13148 [Drosophila virilis]
Length = 588
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 66/143 (46%), Gaps = 32/143 (22%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
LC GCG +IHD+Y++ V D WH CL C C L
Sbjct: 223 LCEGCGQKIHDRYLMNVG-DANWHEQCLACCYCGMQLHH--------------------- 260
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRA-KNKIYHVQCFC 124
TC+VR+ K YCK DY RLFG KC C ++ VMR N ++H+ CF
Sbjct: 261 ---------TCYVRNSKLYCKLDYDRLFGVKCAACCHAILPQELVMRPIPNYVFHLPCFV 311
Query: 125 CVVCGKQLVPGDEFALREDGLFC 147
C C L G++F LR+ LFC
Sbjct: 312 CYACRLPLQKGEQFMLRDGQLFC 334
>gi|47221465|emb|CAG08127.1| unnamed protein product [Tetraodon nigroviridis]
Length = 535
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 71/148 (47%), Gaps = 29/148 (19%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C CG I D+Y+L+V +L WH CL C+ C L ++ +C+V++ + +
Sbjct: 19 CASCGMDIQDRYLLKVN-NLNWHLGCLECSVCRASLRQHNSCYVKNKEIF---------- 67
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
CK DY FGTKC +C D+V RA+ +YH+ CF C
Sbjct: 68 ------------------CKLDYFSRFGTKCAQCGRQVYASDWVRRARGSVYHLACFACF 109
Query: 127 VCGKQLVPGDEFALREDGLFCKDDHEGM 154
C +QL G+EF L E + C+ ++ M
Sbjct: 110 SCKRQLSTGEEFGLVEGRVLCRSHYDIM 137
>gi|51571915|ref|NP_001004015.1| LIM/homeobox protein Lhx6 [Danio rerio]
gi|50953777|gb|AAT90495.1| Lhx6 [Danio rerio]
gi|190336767|gb|AAI62225.1| LIM homeobox 6 [Danio rerio]
Length = 375
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 29/149 (19%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 96 VCASCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 127
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L ++ +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 128 -RTSLRQHSSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 186
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGM 154
C +QL G+EF L E+ + C+ ++ M
Sbjct: 187 FSCKRQLSTGEEFGLVEEKVLCRIHYDTM 215
>gi|348535208|ref|XP_003455093.1| PREDICTED: LIM domain transcription factor LMO4-B-like [Oreochromis
niloticus]
Length = 261
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 71/149 (47%), Gaps = 30/149 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCGG+I D+++L + + WH CL+C+ C +
Sbjct: 16 CAGCGGKIADRFLL-FSMERYWHTRCLKCSCC---------------------------Q 47
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFG--TKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
Q D TC+ + G C+ DY+RLFG C C+ + + VMRA+ +YH++CF
Sbjct: 48 AQLGDIGTTCYSKGGMILCRSDYIRLFGHSGACSACSQSIPANEMVMRAQGNVYHLKCFS 107
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEG 153
C C +L+PGD F +FC+ D G
Sbjct: 108 CATCRNRLMPGDRFHYINGTIFCEHDRPG 136
>gi|133892051|ref|NP_001076596.1| LIM/homeobox protein Lhx6 isoform 4 [Mus musculus]
gi|148676720|gb|EDL08667.1| LIM homeobox protein 6, isoform CRA_a [Mus musculus]
Length = 348
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 69 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 100
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + YCK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 101 -RTSLRQQNSCYIKNKEIYCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 159
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 160 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 200
>gi|354500655|ref|XP_003512414.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 3 [Cricetulus griseus]
Length = 366
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C L + +C++++ + Y
Sbjct: 87 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVCRTSLRQQNSCYIKNKEIY--------- 136
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 137 -------------------CKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 177
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 178 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 218
>gi|154147696|ref|NP_001093698.1| LIM homeobox 1 [Xenopus (Silurana) tropicalis]
gi|138519843|gb|AAI35732.1| lhx1 protein [Xenopus (Silurana) tropicalis]
Length = 409
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 71/146 (48%), Gaps = 32/146 (21%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 4 CAGCERPILDRFLLNVL-DRAWHVKCVQCCECKCNLTEKC-------------------- 42
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK YCK D+ R FGTKC C D V RA++K++H+ CF C+
Sbjct: 43 ----------FSREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCM 92
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDH 151
+C KQL G+E + + E+ CK+D+
Sbjct: 93 MCNKQLSTGEELYIIDENKFVCKEDY 118
>gi|24663250|ref|NP_729801.1| CG32105, isoform B [Drosophila melanogaster]
gi|23093601|gb|AAF49930.2| CG32105, isoform B [Drosophila melanogaster]
gi|28316896|gb|AAO39470.1| RE70810p [Drosophila melanogaster]
Length = 640
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 68/148 (45%), Gaps = 32/148 (21%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
++ LC GCG +IHD++++ V D WH CL C C L
Sbjct: 269 EKNFELCEGCGQKIHDRFLMNVG-DANWHEQCLACCYCGMQLHH---------------- 311
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRA-KNKIYH 119
TC+VR+ K YCK DY RLFG KC C ++ VMR N ++H
Sbjct: 312 --------------TCYVRNSKLYCKMDYDRLFGVKCSSCCHAILPQELVMRPIPNFVFH 357
Query: 120 VQCFCCVVCGKQLVPGDEFALREDGLFC 147
+ CF C C L G++F LR+ LFC
Sbjct: 358 LPCFVCYACRLPLQKGEQFMLRDGQLFC 385
>gi|41053684|ref|NP_956566.1| uncharacterized protein LOC393242 [Danio rerio]
gi|29124458|gb|AAH49054.1| Zgc:56628 [Danio rerio]
Length = 172
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 73/155 (47%), Gaps = 30/155 (19%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
CVGCG +I D+++L A D WH CL+C+ C +
Sbjct: 34 CVGCGCKISDRFLL-FALDGYWHCHCLKCSCC---------------------------Q 65
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFG--TKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
Q + +CF + G CK DY+RLFG C C + + VMRA+ ++HV+CF
Sbjct: 66 AQLAEIGSSCFTKRGLILCKSDYLRLFGHSGACRACGTSIPANEMVMRAQGNVFHVKCFV 125
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSN 159
C +C QLVPGD F L+C+ D + S+
Sbjct: 126 CSICHNQLVPGDRFHYANGKLYCERDKSAASEHSD 160
>gi|5738956|dbj|BAA83421.1| LIM-homeodomain (LHX) protein 6.1a [Mus musculus]
Length = 363
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 69 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 100
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + YCK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 101 -RTSLRQQNSCYIKNKEIYCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 159
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 160 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKKAAENGN 200
>gi|442631924|ref|NP_001261754.1| CG32105, isoform C [Drosophila melanogaster]
gi|440215685|gb|AGB94447.1| CG32105, isoform C [Drosophila melanogaster]
Length = 639
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 68/148 (45%), Gaps = 32/148 (21%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
++ LC GCG +IHD++++ V D WH CL C C L
Sbjct: 268 EKNFELCEGCGQKIHDRFLMNVG-DANWHEQCLACCYCGMQLHH---------------- 310
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRA-KNKIYH 119
TC+VR+ K YCK DY RLFG KC C ++ VMR N ++H
Sbjct: 311 --------------TCYVRNSKLYCKMDYDRLFGVKCSSCCHAILPQELVMRPIPNFVFH 356
Query: 120 VQCFCCVVCGKQLVPGDEFALREDGLFC 147
+ CF C C L G++F LR+ LFC
Sbjct: 357 LPCFVCYACRLPLQKGEQFMLRDGQLFC 384
>gi|242007292|ref|XP_002424475.1| Insulin gene enhancer protein ISL-2, putative [Pediculus humanus
corporis]
gi|212507893|gb|EEB11737.1| Insulin gene enhancer protein ISL-2, putative [Pediculus humanus
corporis]
Length = 396
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 77/149 (51%), Gaps = 31/149 (20%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
L +C C G I D+Y++RVA D+ +H CL C+ C L TCF RD K
Sbjct: 4 LKICGICCGSICDRYLMRVA-DVFYHERCLLCSVCGIRLSH--TCFTRDSK--------- 51
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
YC+ DY RL+ KC C+ ++ VM+A + ++H++CF
Sbjct: 52 -------------------LYCRLDYDRLYAKKCLGCSERISADELVMKALDSVFHLRCF 92
Query: 124 CCVVCGKQLVPGDEFALREDGLFCKDDHE 152
CVVCG +L GD+F +++ LFC+ D+E
Sbjct: 93 ICVVCGVRLQRGDQFVIKQGQLFCRPDYE 121
>gi|195589796|ref|XP_002084635.1| GD14373 [Drosophila simulans]
gi|194196644|gb|EDX10220.1| GD14373 [Drosophila simulans]
Length = 642
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 68/148 (45%), Gaps = 32/148 (21%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
++ LC GCG +IHD++++ V D WH CL C C L
Sbjct: 271 EKNFELCEGCGQKIHDRFLMNVG-DANWHEQCLACCYCGMQLHH---------------- 313
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRA-KNKIYH 119
TC+VR+ K YCK DY RLFG KC C ++ VMR N ++H
Sbjct: 314 --------------TCYVRNSKLYCKMDYDRLFGVKCSSCCHAILPQELVMRPIPNFVFH 359
Query: 120 VQCFCCVVCGKQLVPGDEFALREDGLFC 147
+ CF C C L G++F LR+ LFC
Sbjct: 360 LPCFVCYACRLPLQKGEQFMLRDGQLFC 387
>gi|149038911|gb|EDL93131.1| LIM homeobox protein 6 (predicted), isoform CRA_b [Rattus
norvegicus]
Length = 373
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 94 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 125
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + YCK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 126 -RTSLRQQNSCYIKNKEIYCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 184
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 185 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 225
>gi|344285733|ref|XP_003414614.1| PREDICTED: LIM/homeobox protein Lhx1-like [Loxodonta africana]
Length = 406
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 86/180 (47%), Gaps = 34/180 (18%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 4 CAGCKRPILDRFLLNVL-DRAWHVKCVQCCECKCNLTEKC-------------------- 42
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK YCK D+ R FGTKC C D V RA++K++H+ CF C+
Sbjct: 43 ----------FSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCM 92
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDHEGMDKSSNGENNNNNTNINNNLHNLNNEGSNSGK 185
+C KQL G+E + + E+ CK+D+ + SS + N+ ++ + +L+ + + +
Sbjct: 93 MCNKQLSTGEELYIIDENKFVCKEDY--LSNSSLAKENSLHSATTGSDPSLSPDSQDPSQ 150
>gi|2435404|gb|AAB71337.1| arrowhead [Drosophila melanogaster]
Length = 214
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 75/163 (46%), Gaps = 33/163 (20%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K L C CG I D++ L V WHA CLRC C C
Sbjct: 2 KTELRSCAACGEPISDRFFLEVG-GCSWHAHCLRC----------CMCMCP--------- 41
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
LD +CF+R+ + YCK DY + FG KC K D+V RA+ ++H+
Sbjct: 42 ---------LDRQQSCFIRERQVYCKADYSKNFGAKCSKSCRGISASDWVRRARELVFHL 92
Query: 121 QCFCCVVCGKQLVPGDEFALREDGLFCKDDH----EGMDKSSN 159
CF C CG+QL G++FAL +D + CK + EG SS+
Sbjct: 93 ACFACDQCGRQLSTGEQFALMDDRVLCKAHYLETVEGGTTSSD 135
>gi|449268911|gb|EMC79740.1| LIM homeobox transcription factor 1-alpha [Columba livia]
Length = 343
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 69/147 (46%), Gaps = 31/147 (21%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C GC I D+++LRV + WH C++CA C Q L
Sbjct: 4 VCAGCDTPISDRFLLRVN-ERSWHEGCVKCAVCLQPL----------------------- 39
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
TC+ R+ + YCK DY +LF TKC C + +MR +YHV CF C
Sbjct: 40 -------AGTCYCRNRQLYCKHDYEKLFQTKCSSCLKAIAPSELIMRVLENVYHVHCFYC 92
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHE 152
C ++L GDEF L+E L C+ D+E
Sbjct: 93 CECERRLQRGDEFVLKEGQLLCRSDYE 119
>gi|133893073|ref|NP_001076594.1| LIM/homeobox protein Lhx6 isoform 2 [Mus musculus]
Length = 377
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 98 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 129
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + YCK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 130 -RTSLRQQNSCYIKNKEIYCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 188
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 189 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 229
>gi|354500653|ref|XP_003512413.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Cricetulus griseus]
Length = 377
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 98 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 129
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + YCK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 130 -RTSLRQQNSCYIKNKEIYCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 188
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 189 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 229
>gi|189234898|ref|XP_967153.2| PREDICTED: similar to lim homeobox protein, partial [Tribolium
castaneum]
Length = 368
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 74/148 (50%), Gaps = 31/148 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
LC C I+D+++LR+ D+ +H C++C C L
Sbjct: 1 PLCGMCCRPINDRFLLRIM-DVSYHEHCVQCCACGDRLHH-------------------- 39
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
TCFV+D K YC+ DY RLF KC C+ E+ VMRA I+H++CF
Sbjct: 40 ----------TCFVKDSKLYCRLDYDRLFVKKCLACSERIAPEELVMRASENIFHLRCFV 89
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
CVVCG +L GD + +++ LFC+ D+E
Sbjct: 90 CVVCGIRLQKGDLYVIKQGQLFCRIDYE 117
>gi|260793702|ref|XP_002591850.1| hypothetical protein BRAFLDRAFT_125337 [Branchiostoma floridae]
gi|229277061|gb|EEN47861.1| hypothetical protein BRAFLDRAFT_125337 [Branchiostoma floridae]
Length = 329
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 66/142 (46%), Gaps = 30/142 (21%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCGG+I D+++L A D WH ACL+C+ C +
Sbjct: 65 CAGCGGKIGDRFLLH-ALDRYWHVACLKCSCC---------------------------Q 96
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFC 124
Q D +CF + G CK DY+RLFG C C + +FVMR + +YHV+CF
Sbjct: 97 AQLGDIGSSCFSKAGMILCKTDYIRLFGASGACNACGQSIPANEFVMRTQGNVYHVKCFT 156
Query: 125 CVVCGKQLVPGDEFALREDGLF 146
C C QL PGD L G+
Sbjct: 157 CFTCRYQLSPGDSSLLSRVGVL 178
>gi|195163209|ref|XP_002022444.1| GL13034 [Drosophila persimilis]
gi|194104436|gb|EDW26479.1| GL13034 [Drosophila persimilis]
Length = 332
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 32/146 (21%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V + WHA+C+RC EC Q L + C
Sbjct: 24 CAGCNKPILDKFLLNVL-ERAWHASCVRCCECLQPLTDKC-------------------- 62
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+ K YC+ D+ R +GTKC C D V + ++K++H+ CF C
Sbjct: 63 ----------FSRESKLYCRNDFFRRYGTKCSGCGQGIAPSDLVRKPRDKVFHLNCFTCC 112
Query: 127 VCGKQLVPGDEFALREDGLF-CKDDH 151
+C KQL G++ + +D F CKDD+
Sbjct: 113 ICRKQLSTGEQLYVLDDNKFICKDDY 138
>gi|148676722|gb|EDL08669.1| LIM homeobox protein 6, isoform CRA_c [Mus musculus]
Length = 395
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 101 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 132
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + YCK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 133 -RTSLRQQNSCYIKNKEIYCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 191
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 192 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 232
>gi|344241263|gb|EGV97366.1| LIM/homeobox protein Lhx6 [Cricetulus griseus]
Length = 363
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 69 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 100
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + YCK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 101 -RTSLRQQNSCYIKNKEIYCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 159
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 160 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 200
>gi|322789289|gb|EFZ14609.1| hypothetical protein SINV_08936 [Solenopsis invicta]
Length = 161
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 52/65 (80%)
Query: 91 RLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDD 150
RLFGTKC+KC+ F + D+VMRAK KIYHV+CF C C ++L GDEFALR+DGLFC+ D
Sbjct: 39 RLFGTKCDKCSQCFSKNDYVMRAKTKIYHVECFRCCACMRRLETGDEFALRQDGLFCRHD 98
Query: 151 HEGMD 155
H+ ++
Sbjct: 99 HDVLE 103
>gi|133892446|ref|NP_001076595.1| LIM/homeobox protein Lhx6 isoform 3 [Mus musculus]
gi|341940899|sp|Q9R1R0.2|LHX6_MOUSE RecName: Full=LIM/homeobox protein Lhx6; Short=LIM homeobox protein
6; AltName: Full=LIM/homeobox protein Lhx6.1
gi|40787713|gb|AAH65077.1| Lhx6 protein [Mus musculus]
Length = 363
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 69 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 100
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + YCK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 101 -RTSLRQQNSCYIKNKEIYCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 159
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 160 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 200
>gi|195493808|ref|XP_002094572.1| GE21898 [Drosophila yakuba]
gi|194180673|gb|EDW94284.1| GE21898 [Drosophila yakuba]
Length = 642
Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 68/148 (45%), Gaps = 32/148 (21%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
++ LC GCG +IHD++++ V D WH CL C C L
Sbjct: 269 EKNFELCEGCGQKIHDRFLMNVG-DANWHEQCLACCYCGMQLHH---------------- 311
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRA-KNKIYH 119
TC+VR+ K YCK DY RLFG KC C ++ VMR N ++H
Sbjct: 312 --------------TCYVRNSKLYCKMDYDRLFGVKCSSCCHAILPQELVMRPIPNYVFH 357
Query: 120 VQCFCCVVCGKQLVPGDEFALREDGLFC 147
+ CF C C L G++F LR+ LFC
Sbjct: 358 LPCFVCYACRLPLQKGEQFMLRDGQLFC 385
>gi|383853574|ref|XP_003702297.1| PREDICTED: LIM/homeobox protein Lhx5-like [Megachile rotundata]
Length = 485
Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 35/179 (19%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I DQY+L V D WH C+RC +C L + C
Sbjct: 5 CAGCEKPIMDQYLLNVL-DRAWHVECVRCFDCRTTLQDKC-------------------- 43
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+ K +C+ D+ R +GTKC C +D V +A++K++H+ CF C+
Sbjct: 44 ----------FSREAKLFCREDFFRRYGTKCSGCLQGISPQDLVRKARDKVFHLNCFTCL 93
Query: 127 VCGKQLVPGDEFALREDGLF-CKDDH---EGMDKSSNGENNNNNTNINNNLHNLNNEGS 181
VC KQ+ G+E + +D F CK D+ + + + + ++ ++N++ +L GS
Sbjct: 94 VCRKQMSTGEELYVLDDNKFVCKQDYLSGKPLPDTHHVHGHHESSNLSTGGDSLMGSGS 152
>gi|198464782|ref|XP_001353366.2| GA16684 [Drosophila pseudoobscura pseudoobscura]
gi|198149877|gb|EAL30873.2| GA16684 [Drosophila pseudoobscura pseudoobscura]
Length = 620
Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 67/148 (45%), Gaps = 32/148 (21%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
++ LC GCG +IHD+Y++ V + WH CL C C L
Sbjct: 251 EKNFELCEGCGQKIHDRYLMNVG-EANWHEQCLACCYCGMQLHH---------------- 293
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRA-KNKIYH 119
TC+VR K YCK DY RLFG KC C ++ VMR N ++H
Sbjct: 294 --------------TCYVRSSKLYCKMDYDRLFGVKCASCCHAILPQELVMRPIPNYVFH 339
Query: 120 VQCFCCVVCGKQLVPGDEFALREDGLFC 147
+ CF C C L G++F LR+ LFC
Sbjct: 340 LPCFVCYACRLPLQKGEQFMLRDGQLFC 367
>gi|195160505|ref|XP_002021116.1| GL25169 [Drosophila persimilis]
gi|194118229|gb|EDW40272.1| GL25169 [Drosophila persimilis]
Length = 613
Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 67/148 (45%), Gaps = 32/148 (21%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
++ LC GCG +IHD+Y++ V + WH CL C C L
Sbjct: 244 EKNFELCEGCGQKIHDRYLMNVG-EANWHEQCLACCYCGMQLHH---------------- 286
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRA-KNKIYH 119
TC+VR K YCK DY RLFG KC C ++ VMR N ++H
Sbjct: 287 --------------TCYVRSSKLYCKMDYDRLFGVKCASCCHAILPQELVMRPIPNYVFH 332
Query: 120 VQCFCCVVCGKQLVPGDEFALREDGLFC 147
+ CF C C L G++F LR+ LFC
Sbjct: 333 LPCFVCYACRLPLQKGEQFMLRDGQLFC 360
>gi|195126146|ref|XP_002007535.1| GI13003 [Drosophila mojavensis]
gi|193919144|gb|EDW18011.1| GI13003 [Drosophila mojavensis]
Length = 607
Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 66/143 (46%), Gaps = 32/143 (22%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
LC GCG +IHD+Y++ V D WH CL C C L
Sbjct: 243 LCEGCGQKIHDRYLMNVG-DANWHEQCLACCYCGMQLHH--------------------- 280
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRA-KNKIYHVQCFC 124
TC+VR+ K YCK DY RLFG KC C ++ VMR N ++H+ CF
Sbjct: 281 ---------TCYVRNSKLYCKLDYDRLFGVKCAGCCHAILPQELVMRPIPNYVFHLPCFV 331
Query: 125 CVVCGKQLVPGDEFALREDGLFC 147
C C L G++F LR+ LFC
Sbjct: 332 CYACRLPLQKGEQFMLRDGQLFC 354
>gi|157821727|ref|NP_001101307.1| LIM/homeobox protein Lhx6 [Rattus norvegicus]
gi|149038910|gb|EDL93130.1| LIM homeobox protein 6 (predicted), isoform CRA_a [Rattus
norvegicus]
Length = 388
Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 94 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 125
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + YCK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 126 -RTSLRQQNSCYIKNKEIYCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 184
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 185 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 225
>gi|195327101|ref|XP_002030260.1| GM25340 [Drosophila sechellia]
gi|194119203|gb|EDW41246.1| GM25340 [Drosophila sechellia]
Length = 637
Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 68/148 (45%), Gaps = 32/148 (21%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
++ LC GCG +IHD++++ V D WH CL C C L
Sbjct: 268 EKNFELCEGCGQKIHDRFLMNVG-DANWHEQCLACCYCGMQLHH---------------- 310
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRA-KNKIYH 119
TC+VR+ K YCK DY RLFG KC C ++ VMR N ++H
Sbjct: 311 --------------TCYVRNSKLYCKMDYDRLFGIKCSSCCHAILPQELVMRPIPNFVFH 356
Query: 120 VQCFCCVVCGKQLVPGDEFALREDGLFC 147
+ CF C C L G++F LR+ LFC
Sbjct: 357 LPCFVCYACRLPLQKGEQFMLRDGQLFC 384
>gi|148676723|gb|EDL08670.1| LIM homeobox protein 6, isoform CRA_d [Mus musculus]
Length = 388
Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 94 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 125
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + YCK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 126 -RTSLRQQNSCYIKNKEIYCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 184
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 185 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 225
>gi|354500651|ref|XP_003512412.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Cricetulus griseus]
Length = 392
Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 98 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 129
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + YCK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 130 -RTSLRQQNSCYIKNKEIYCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 188
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 189 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 229
>gi|236201759|dbj|BAH58772.1| LIM homeodomain protein Hr-Lhx3 b-form [Halocynthia roretzi]
Length = 611
Score = 89.4 bits (220), Expect = 7e-16, Method: Composition-based stats.
Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 32/147 (21%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC +I D++IL+V D WH+ L+C +C L E C
Sbjct: 201 CTGCEHRIFDRFILKVQ-DKPWHSQGLKCNDCSAQLSEKC-------------------- 239
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R +CK D+ + FGTKC C + + RA++ +YH++ FCC
Sbjct: 240 ----------FSRGNLVFCKDDFFKRFGTKCTACGHGIPPTEVIRRAQDNVYHLEGFCCF 289
Query: 127 VCGKQLVPGDEFALREDG-LFCKDDHE 152
+C +++ GD+F L ED L CK D+E
Sbjct: 290 LCHEKMGTGDQFYLLEDNRLVCKKDYE 316
>gi|326668246|ref|XP_685757.4| PREDICTED: LIM/homeobox protein Lhx6 [Danio rerio]
Length = 270
Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 70/143 (48%), Gaps = 29/143 (20%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C GC +I D+Y+L+V L WH CL+C+ C VS
Sbjct: 32 ICTGCSTEIFDRYVLKVN-GLTWHLRCLQCSVCA----------------------VS-- 66
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L +CF+R+ + +C+ DY FG KC +C D++ RA N IYH+ CF C
Sbjct: 67 ----LGHQNSCFIRNKEIFCRTDYNSTFGIKCARCGHQVSANDWIRRAGNDIYHLACFAC 122
Query: 126 VVCGKQLVPGDEFALREDGLFCK 148
C +QL G+EF L E+ + C+
Sbjct: 123 FFCKRQLSTGEEFGLMENQVLCR 145
>gi|133891794|ref|NP_032526.2| LIM/homeobox protein Lhx6 isoform 1 [Mus musculus]
Length = 392
Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 98 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 129
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + YCK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 130 -RTSLRQQNSCYIKNKEIYCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 188
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 189 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 229
>gi|196011854|ref|XP_002115790.1| hypothetical protein TRIADDRAFT_30033 [Trichoplax adhaerens]
gi|190581566|gb|EDV21642.1| hypothetical protein TRIADDRAFT_30033 [Trichoplax adhaerens]
Length = 292
Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 32/161 (19%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D +WH C++C++C L E C
Sbjct: 4 CAGCQLPICDKFLLSVL-DRKWHTKCVQCSQCKVQLSEKC-------------------- 42
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F RDGK YC+ D+ R +GTKC C + + V RA++ +YH++C C
Sbjct: 43 ----------FSRDGKLYCRNDFYRTYGTKCSGCGIGIPPNELVRRARDDVYHIKCLKCA 92
Query: 127 VCGKQLVPGDEFALREDGLF-CKDDHEGMDKSSNGENNNNN 166
+CG+Q+ G++ + + + C+ D++ S+N N+ +
Sbjct: 93 ICGRQMSTGEQLYINQHNQYICQADYQNSISSTNTSLNDQS 133
>gi|307189897|gb|EFN74141.1| LIM homeobox transcription factor 1 beta [Camponotus floridanus]
Length = 402
Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 70/149 (46%), Gaps = 32/149 (21%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GCG I D+Y++RVA + +H CL C C L
Sbjct: 56 TICAGCGRTIADKYVMRVA-ERNYHEECLSCTVCGAMLSH-------------------- 94
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNK-IYHVQCF 123
+CF+RD K YC+ DY R+FG KC +C D VMR + ++HV+CF
Sbjct: 95 ----------SCFIRDLKLYCRSDYERIFGVKCARCMEKISCSDLVMRPVSGLVFHVECF 144
Query: 124 CCVVCGKQLVPGDEFALREDGLFCKDDHE 152
C +CG+ L G + LR+ C+ D E
Sbjct: 145 ACCMCGQPLPRGAHYILRQGQPICRRDFE 173
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 9/93 (9%)
Query: 19 ILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV------SSEKNQFLDE 72
++R L +H C C C Q L +R G+ C+RD+ S + + LDE
Sbjct: 130 VMRPVSGLVFHVECFACCMCGQPLPRGAHYILRQGQPICRRDFEHELFLNSPQDDDLLDE 189
Query: 73 NCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFK 105
N RDG+ KR L + + +F+
Sbjct: 190 NRP---RDGRRGPKRPRTILTSAQRRQFKASFE 219
Score = 35.8 bits (81), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 92 LFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDH 151
L T C C + +VMR + YH +C C VCG L +R+ L+C+ D+
Sbjct: 53 LLETICAGCGRTIA-DKYVMRVAERNYHEECLSCTVCGAML--SHSCFIRDLKLYCRSDY 109
Query: 152 E 152
E
Sbjct: 110 E 110
>gi|410902629|ref|XP_003964796.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Takifugu
rubripes]
Length = 376
Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 68/147 (46%), Gaps = 31/147 (21%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
LC GC I D+++LRV + WH C++CA C L C C
Sbjct: 31 LCAGCEAPIADRFLLRVN-ERSWHETCVKCAVCLSALTGTCYC----------------- 72
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
RD YCK DY +LF KC C R + +MR + ++YH+ CF C
Sbjct: 73 -------------RDRLLYCKHDYEKLFVRKCSSCLQVIGRSELIMRVQGQVYHLGCFTC 119
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHE 152
C ++L GDEF L+E L C+ D+E
Sbjct: 120 CECERRLQRGDEFVLKEGQLLCRMDYE 146
>gi|194869797|ref|XP_001972523.1| GG15572 [Drosophila erecta]
gi|190654306|gb|EDV51549.1| GG15572 [Drosophila erecta]
Length = 652
Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 68/148 (45%), Gaps = 32/148 (21%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
++ LC GCG +IHD++++ V D WH CL C C L
Sbjct: 277 EKNFELCEGCGQKIHDRFLMNVG-DANWHEQCLACCYCGMQLHH---------------- 319
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRA-KNKIYH 119
TC+VR+ K YCK DY RLFG KC C ++ VMR N ++H
Sbjct: 320 --------------TCYVRNSKLYCKMDYDRLFGVKCSSCCHAILPQELVMRPIPNFVFH 365
Query: 120 VQCFCCVVCGKQLVPGDEFALREDGLFC 147
+ CF C C L G++F LR+ LFC
Sbjct: 366 LPCFVCYACRLPLQKGEQFMLRDGQLFC 393
>gi|47551255|ref|NP_999810.1| Lim homeodomain transcription factor 1 [Strongylocentrotus
purpuratus]
gi|33286229|gb|AAQ01662.1| Lim homeodomain transcription factor 1 [Strongylocentrotus
purpuratus]
Length = 480
Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 73/149 (48%), Gaps = 32/149 (21%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ +C GC I D+++L V D WH C++C EC L E C
Sbjct: 2 VQVCAGCERPILDRFLLNVL-DRPWHVKCVQCCECKAKLTEKC----------------- 43
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F R+GK +CK D+ R +GTKC C D V RA++K++H+ CF
Sbjct: 44 -------------FSREGKLFCKNDFFRRYGTKCAGCLQGILPSDLVRRARSKVFHLNCF 90
Query: 124 CCVVCGKQLVPGDE-FALREDGLFCKDDH 151
C+VC KQL G+E + + E+ CK+D+
Sbjct: 91 TCMVCRKQLSTGEELYVVDENQFICKEDY 119
>gi|167859076|gb|ACA04473.1| Lim1 [Strongylocentrotus purpuratus]
Length = 480
Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 73/149 (48%), Gaps = 32/149 (21%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ +C GC I D+++L V D WH C++C EC L E C
Sbjct: 2 VQVCAGCERPILDRFLLNVL-DRPWHVKCVQCCECKAKLTEKC----------------- 43
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F R+GK +CK D+ R +GTKC C D V RA++K++H+ CF
Sbjct: 44 -------------FSREGKLFCKNDFFRRYGTKCAGCLQGILPSDLVRRARSKVFHLNCF 90
Query: 124 CCVVCGKQLVPGDE-FALREDGLFCKDDH 151
C+VC KQL G+E + + E+ CK+D+
Sbjct: 91 TCMVCRKQLSTGEELYVVDENQFICKEDY 119
>gi|15706308|dbj|BAB68342.1| Cs-LHX3 [Ciona savignyi]
Length = 472
Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 72/151 (47%), Gaps = 32/151 (21%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
++ C GC I D++IL+V D WHA CL+C +C + L + C
Sbjct: 74 KIPKCTGCAQHIFDRFILKVQ-DKPWHAQCLKCGDCGRQLTDKC---------------- 116
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQC 122
F R YCK D+ + +GTKC C+ + V RA+ +YH++C
Sbjct: 117 --------------FSRGSFVYCKEDFFKRYGTKCAGCDEAIPPTEVVRRAQENVYHLEC 162
Query: 123 FCCVVCGKQLVPGDEFALREDG-LFCKDDHE 152
F C +C QL GD+F L +D L CK D+E
Sbjct: 163 FRCFMCNDQLGTGDQFYLLDDNRLVCKKDYE 193
>gi|10257388|dbj|BAB13725.1| transcription factor HpLim1 [Hemicentrotus pulcherrimus]
Length = 480
Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 73/149 (48%), Gaps = 32/149 (21%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ +C GC I D+++L V D WH C++C EC L E C
Sbjct: 2 VQVCAGCERPILDRFLLNVL-DRPWHVKCVQCCECKAKLTEKC----------------- 43
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F R+GK +CK D+ R +GTKC C D V RA++K++H+ CF
Sbjct: 44 -------------FSREGKLFCKNDFFRRYGTKCAGCLQGILPSDLVRRARSKVFHLNCF 90
Query: 124 CCVVCGKQLVPGDE-FALREDGLFCKDDH 151
C+VC KQL G+E + + E+ CK+D+
Sbjct: 91 TCMVCRKQLSTGEELYVVDENQFICKEDY 119
>gi|110748616|gb|ABG89861.1| Lhx6, partial [Astyanax mexicanus]
Length = 303
Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 29/149 (19%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 109 VCASCGLEILDRYLLKVN-NLIWHXRCLECSVC--------------------------- 140
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L ++ +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 141 -RTSLRQHSSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 199
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGM 154
C +QL G+EF L E+ + C+ ++ M
Sbjct: 200 FSCKRQLSTGEEFGLVEEKVLCRIHYDTM 228
>gi|432853477|ref|XP_004067726.1| PREDICTED: LIM/homeobox protein Lhx8 [Oryzias latipes]
Length = 338
Score = 89.0 bits (219), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 73/150 (48%), Gaps = 29/150 (19%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S+C C +I D+Y+L+V DL WH CL C+ C
Sbjct: 53 SVCANCNEEIVDKYLLKVN-DLCWHVRCLSCSVC-------------------------- 85
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
L + +C++++ + +CK DY R +GT C C N D+V RAK +YH+ CF
Sbjct: 86 --QTSLGSHASCYIKEKEIFCKLDYFRRYGTWCACCGRNIHSTDWVRRAKGNVYHLACFA 143
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
C C +QL G+EFAL E + C+ ++ M
Sbjct: 144 CFSCKRQLSTGEEFALVEGKVLCRIHYDCM 173
>gi|158287501|ref|XP_309513.3| AGAP011134-PA [Anopheles gambiae str. PEST]
gi|157019681|gb|EAA05265.3| AGAP011134-PA [Anopheles gambiae str. PEST]
Length = 501
Score = 89.0 bits (219), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 32/146 (21%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V + WHA C+RC ECHQ L + C
Sbjct: 27 CAGCNKPILDKFLLNVL-ERGWHATCVRCCECHQPLADKC-------------------- 65
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+ K YC+ D+ R +GTKC C D V + ++K++H+ CF C
Sbjct: 66 ----------FSRESKLYCRNDFFRRYGTKCSGCGQGIAPSDLVRKPRDKVFHLNCFTCC 115
Query: 127 VCGKQLVPGDEFALREDGLF-CKDDH 151
+C KQ+ G++ + +D F CKDD+
Sbjct: 116 ICRKQISTGEQLYVLDDNKFICKDDY 141
>gi|332029130|gb|EGI69141.1| LIM/homeobox protein Awh [Acromyrmex echinatior]
Length = 292
Score = 89.0 bits (219), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 82/179 (45%), Gaps = 35/179 (19%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCG ++ ++ IL V WH+ CLRC+ C
Sbjct: 3 CGGCGERVRERTILCVG-GRTWHSRCLRCSAC---------------------------- 33
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
+ L + +CF R + YC+ DY R FG KC KC + D+V RA+ ++YH+ CF C
Sbjct: 34 ARPLHDQHSCFQRGMRVYCRHDYDRTFGAKCAKCGRSVGAGDWVRRARERVYHLACFACD 93
Query: 127 VCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNNTNINNNLHNLNNEGSNSGK 185
C +QL G++FAL + L CK + + + NNN++ ++G N K
Sbjct: 94 ACSRQLSTGEQFALLDARLLCKAHYLDVVE------GNNNSSAEGGDSESGHKGGNKAK 146
>gi|306526228|sp|Q25132.2|LHX3_HALRO RecName: Full=LIM/homeobox protein Lhx3; Short=Hr-Lhx3; Short=LIM
homeobox protein 3; AltName: Full=LIM/homeobox protein
LIM; Short=HrLIM
Length = 692
Score = 89.0 bits (219), Expect = 9e-16, Method: Composition-based stats.
Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 32/147 (21%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC +I D++IL+V D WH+ L+C +C L E C
Sbjct: 282 CTGCEHRIFDRFILKVQ-DKPWHSQGLKCNDCSAQLSEKC-------------------- 320
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R +CK D+ + FGTKC C + + RA++ +YH++ FCC
Sbjct: 321 ----------FSRGNLVFCKDDFFKRFGTKCTACGHGIPPTEVIRRAQDNVYHLEGFCCF 370
Query: 127 VCGKQLVPGDEFALREDG-LFCKDDHE 152
+C +++ GD+F L ED L CK D+E
Sbjct: 371 LCHEKMGTGDQFYLLEDNRLVCKKDYE 397
>gi|410930167|ref|XP_003978470.1| PREDICTED: LIM/homeobox protein Lhx1-like [Takifugu rubripes]
Length = 408
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 78/159 (49%), Gaps = 35/159 (22%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 4 CAGCERPILDRFLLNVL-DRAWHVKCVQCCECKCNLTEKC-------------------- 42
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+G+ YCK D+ R FGTKC C D V RA++K++H+ CF C+
Sbjct: 43 ----------FSREGRLYCKNDFFRRFGTKCGGCFQGISPNDLVRRARSKVFHLNCFTCM 92
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDHEGMDKSSNGENNN 164
+C KQL G+E + + E+ CK+D+ +SNG++ N
Sbjct: 93 MCNKQLSTGEELYIIDENKFVCKEDYL---SNSNGKDTN 128
>gi|340710825|ref|XP_003393984.1| PREDICTED: LIM/homeobox protein Lhx5-like [Bombus terrestris]
Length = 479
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 35/179 (19%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I DQY+L V D WH C+RC +C L + C
Sbjct: 5 CAGCEKPIMDQYLLNVL-DRAWHVECVRCFDCRTTLQDKC-------------------- 43
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+ K +C+ D+ R +GTKC C +D V +A++K++H+ CF C+
Sbjct: 44 ----------FSREAKLFCREDFFRRYGTKCSGCLQGISPQDLVRKARDKVFHLNCFTCL 93
Query: 127 VCGKQLVPGDEFALREDGLF-CKDDH---EGMDKSSNGENNNNNTNINNNLHNLNNEGS 181
VC KQ+ G+E + +D F CK D+ + + + + ++ ++N++ +L GS
Sbjct: 94 VCRKQMSTGEELYVLDDNKFVCKQDYLSGKPLPDTHHVHGHHESSNLSTGGDSLMGSGS 152
>gi|348505012|ref|XP_003440055.1| PREDICTED: LIM/homeobox protein Lhx8-like [Oreochromis niloticus]
Length = 338
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 73/150 (48%), Gaps = 29/150 (19%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C C +I D+Y+L+V DL WH CL C+ C L + +C++++ + +
Sbjct: 53 TVCASCNEEIVDKYLLKVN-DLCWHVRCLSCSVCQTSLGSHTSCYIKEKEVF-------- 103
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
CK DY R +GT C C N D+V RAK +YH+ CF
Sbjct: 104 --------------------CKLDYFRRYGTWCACCGRNIHSTDWVRRAKGNVYHLACFA 143
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
C C +QL G+EFAL E + C+ ++ M
Sbjct: 144 CFSCKRQLSTGEEFALVEGKVLCRVHYDCM 173
>gi|345329744|ref|XP_001512364.2| PREDICTED: LIM/homeobox protein Lhx6 [Ornithorhynchus anatinus]
Length = 364
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 70 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 101
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 102 -RTSLRQQSSCYIKNKEIFCKVDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 160
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 161 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 201
>gi|351694308|gb|EHA97226.1| LIM/homeobox protein Lhx6 [Heterocephalus glaber]
Length = 294
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 47 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 78
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 79 -RTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 137
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 138 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 178
>gi|344271985|ref|XP_003407817.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 3 [Loxodonta africana]
Length = 366
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 29/149 (19%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C L + +C++++ + +
Sbjct: 87 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVCRTSLRQQNSCYIKNKEIF--------- 136
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 137 -------------------CKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 177
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGM 154
C +QL G+EF L E+ + C+ ++ M
Sbjct: 178 FSCKRQLSTGEEFGLVEEKVLCRIHYDTM 206
>gi|198469300|ref|XP_001354984.2| GA10943 [Drosophila pseudoobscura pseudoobscura]
gi|198146805|gb|EAL32040.2| GA10943 [Drosophila pseudoobscura pseudoobscura]
Length = 528
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 32/146 (21%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V + WHA+C+RC EC Q L + C
Sbjct: 27 CAGCNKPILDKFLLNVL-ERAWHASCVRCCECLQPLTDKC-------------------- 65
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+ K YC+ D+ R +GTKC C D V + ++K++H+ CF C
Sbjct: 66 ----------FSRESKLYCRNDFFRRYGTKCSGCGQGIAPSDLVRKPRDKVFHLNCFTCC 115
Query: 127 VCGKQLVPGDEFALREDGLF-CKDDH 151
+C KQL G++ + +D F CKDD+
Sbjct: 116 ICRKQLSTGEQLYVLDDNKFICKDDY 141
>gi|332229917|ref|XP_003264133.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Nomascus
leucogenys]
Length = 376
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 98 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 129
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 130 -RTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 188
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 189 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 229
>gi|194769270|ref|XP_001966729.1| GF19125 [Drosophila ananassae]
gi|190618250|gb|EDV33774.1| GF19125 [Drosophila ananassae]
Length = 500
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 32/146 (21%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V + WHA+C+RC EC Q L + C
Sbjct: 27 CAGCNKPILDKFLLNVL-ERAWHASCVRCCECLQPLTDKC-------------------- 65
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+ K YC+ D+ R +GTKC C D V + ++K++H+ CF C
Sbjct: 66 ----------FSRESKLYCRNDFFRRYGTKCSGCGQGIAPSDLVRKPRDKVFHLNCFTCC 115
Query: 127 VCGKQLVPGDEFALREDGLF-CKDDH 151
+C KQL G++ + +D F CKDD+
Sbjct: 116 ICRKQLSTGEQLYVLDDNKFICKDDY 141
>gi|156379960|ref|XP_001631723.1| predicted protein [Nematostella vectensis]
gi|156218768|gb|EDO39660.1| predicted protein [Nematostella vectensis]
Length = 213
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 71/146 (48%), Gaps = 32/146 (21%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L+V D WHA C++C++C L E C
Sbjct: 5 CAGCQLPIADKFLLKVL-DGVWHAQCVQCSDCKCPLTERC-------------------- 43
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+GK +CK D+ R +GTKC C+ D V RAK+ ++HV CF C
Sbjct: 44 ----------FSREGKLFCKTDFYRRYGTKCSGCDQGISPNDMVRRAKHLVFHVDCFVCS 93
Query: 127 VCGKQLVPGDEFALREDGLF-CKDDH 151
C +Q+ GDE DG F C+DD+
Sbjct: 94 YCKRQITTGDELYYIGDGSFICRDDY 119
>gi|444724034|gb|ELW64656.1| LIM/homeobox protein Lhx6 [Tupaia chinensis]
Length = 336
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C L + +C++++ + +
Sbjct: 47 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVCRTSLRQQNSCYIKNKEIF--------- 96
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 97 -------------------CKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 137
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 138 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 178
>gi|443701940|gb|ELU00130.1| hypothetical protein CAPTEDRAFT_97456 [Capitella teleta]
Length = 269
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 73/148 (49%), Gaps = 32/148 (21%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
+ C+GCG +I D++ + V D WH C++CA+C + L +
Sbjct: 3 TTCIGCGSEISDRFFMTVL-DQAWHTHCVQCADCGEKLID-------------------- 41
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ R+ K YCK D+ + F T+C C + D V RA +++YH+QCF
Sbjct: 42 ----------SCYTREKKLYCKSDFFKRFATQCGVCKRDLSPSDLVRRALDRVYHLQCFT 91
Query: 125 CVVCGKQLVPGDE-FALREDGLFCKDDH 151
C+VC +QL G+E F L CK D+
Sbjct: 92 CLVCRRQLDTGEEYFVLDTTRFMCKKDY 119
>gi|332229915|ref|XP_003264132.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Nomascus
leucogenys]
Length = 365
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 87 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 118
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 119 -RTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 177
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 178 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 218
>gi|426362929|ref|XP_004048602.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Gorilla gorilla
gorilla]
Length = 369
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 91 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 122
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 123 -RTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 181
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 182 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 222
>gi|355567465|gb|EHH23806.1| hypothetical protein EGK_07356 [Macaca mulatta]
Length = 363
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 69 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 100
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 101 -RTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 159
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 160 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 200
>gi|195480019|ref|XP_002101106.1| GE17432 [Drosophila yakuba]
gi|194188630|gb|EDX02214.1| GE17432 [Drosophila yakuba]
Length = 500
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 32/146 (21%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V + WHA+C+RC EC Q L + C
Sbjct: 27 CAGCNKPILDKFLLNVL-ERAWHASCVRCCECLQPLTDKC-------------------- 65
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+ K YC+ D+ R +GTKC C D V + ++K++H+ CF C
Sbjct: 66 ----------FSRESKLYCRNDFFRRYGTKCSGCGQGIAPSDLVRKPRDKVFHLNCFTCC 115
Query: 127 VCGKQLVPGDEFALREDGLF-CKDDH 151
+C KQL G++ + +D F CKDD+
Sbjct: 116 ICRKQLSTGEQLYVLDDNKFICKDDY 141
>gi|194890894|ref|XP_001977402.1| GG19023 [Drosophila erecta]
gi|190649051|gb|EDV46329.1| GG19023 [Drosophila erecta]
Length = 504
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 32/146 (21%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V + WHA+C+RC EC Q L + C
Sbjct: 27 CAGCNKPILDKFLLNVL-ERAWHASCVRCCECLQPLTDKC-------------------- 65
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+ K YC+ D+ R +GTKC C D V + ++K++H+ CF C
Sbjct: 66 ----------FSRESKLYCRNDFFRRYGTKCSGCGQGIAPSDLVRKPRDKVFHLNCFTCC 115
Query: 127 VCGKQLVPGDEFALREDGLF-CKDDH 151
+C KQL G++ + +D F CKDD+
Sbjct: 116 ICRKQLSTGEQLYVLDDNKFICKDDY 141
>gi|18858205|ref|NP_572505.1| Lim1, isoform A [Drosophila melanogaster]
gi|39841014|gb|AAD55417.2|AF181631_1 GH04929p [Drosophila melanogaster]
gi|6252420|dbj|BAA86224.1| dLim1 [Drosophila melanogaster]
gi|22833027|gb|AAF46413.2| Lim1, isoform A [Drosophila melanogaster]
gi|220943666|gb|ACL84376.1| Lim1-PA [synthetic construct]
gi|220953602|gb|ACL89344.1| Lim1-PA [synthetic construct]
Length = 505
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 32/146 (21%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V + WHA+C+RC EC Q L + C
Sbjct: 27 CAGCNKPILDKFLLNVL-ERAWHASCVRCCECLQPLTDKC-------------------- 65
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+ K YC+ D+ R +GTKC C D V + ++K++H+ CF C
Sbjct: 66 ----------FSRESKLYCRNDFFRRYGTKCSGCGQGIAPSDLVRKPRDKVFHLNCFTCC 115
Query: 127 VCGKQLVPGDEFALREDGLF-CKDDH 151
+C KQL G++ + +D F CKDD+
Sbjct: 116 ICRKQLSTGEQLYVLDDNKFICKDDY 141
>gi|5738960|dbj|BAA83423.1| LIM-homeodomain (LHX) protein 6.1b [Homo sapiens]
Length = 348
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 69 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 100
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 101 -RTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 159
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 160 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 200
>gi|74355622|gb|AAI03937.1| LIM homeobox 6 [Homo sapiens]
gi|119607921|gb|EAW87515.1| LIM homeobox 6, isoform CRA_a [Homo sapiens]
Length = 348
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 69 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 100
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 101 -RTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 159
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 160 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 200
>gi|390458309|ref|XP_003732088.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Callithrix jacchus]
Length = 348
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 69 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 100
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 101 -RTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 159
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 160 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 200
>gi|195049216|ref|XP_001992673.1| GH24084 [Drosophila grimshawi]
gi|193893514|gb|EDV92380.1| GH24084 [Drosophila grimshawi]
Length = 501
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 32/146 (21%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V + WHA+C+RC EC Q L + C
Sbjct: 27 CAGCNKPILDKFLLNVL-ERAWHASCVRCCECLQPLTDKC-------------------- 65
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+ K YC+ D+ R +GTKC C D V + ++K++H+ CF C
Sbjct: 66 ----------FSRESKLYCRNDFFRRYGTKCSGCGQGIAPSDLVRKPRDKVFHLNCFTCC 115
Query: 127 VCGKQLVPGDEFALREDGLF-CKDDH 151
+C KQL G++ + +D F CKDD+
Sbjct: 116 ICRKQLSTGEQLYVLDDNKFICKDDY 141
>gi|334191689|ref|NP_001229262.1| LIM/homeobox protein Lhx6 isoform 3 [Homo sapiens]
gi|221041678|dbj|BAH12516.1| unnamed protein product [Homo sapiens]
Length = 366
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 87 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 118
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 119 -RTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 177
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 178 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 218
>gi|344271983|ref|XP_003407816.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Loxodonta africana]
Length = 377
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 98 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 129
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 130 -RTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 188
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 189 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 229
>gi|332229919|ref|XP_003264134.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 3 [Nomascus
leucogenys]
Length = 391
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 98 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 129
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 130 -RTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 188
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 189 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 229
>gi|410043123|ref|XP_003312314.2| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Pan troglodytes]
Length = 348
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 69 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 100
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 101 -RTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 159
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 160 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 200
>gi|395824117|ref|XP_003785317.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Otolemur garnettii]
Length = 377
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 98 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 129
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 130 -RTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 188
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 189 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 229
>gi|297270224|ref|XP_001088818.2| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Macaca mulatta]
Length = 377
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 98 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 129
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 130 -RTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 188
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 189 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 229
>gi|195456664|ref|XP_002075233.1| GK16904 [Drosophila willistoni]
gi|194171318|gb|EDW86219.1| GK16904 [Drosophila willistoni]
Length = 506
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 32/146 (21%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V + WHA+C+RC EC Q L + C
Sbjct: 27 CAGCNKPILDKFLLNVL-ERAWHASCVRCCECLQPLTDKC-------------------- 65
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+ K YC+ D+ R +GTKC C D V + ++K++H+ CF C
Sbjct: 66 ----------FSRESKLYCRNDFFRRYGTKCSGCGQGIAPSDLVRKPRDKVFHLNCFTCC 115
Query: 127 VCGKQLVPGDEFALREDGLF-CKDDH 151
+C KQL G++ + +D F CKDD+
Sbjct: 116 ICRKQLSTGEQLYVLDDNKFICKDDY 141
>gi|403266045|ref|XP_003925208.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Saimiri boliviensis
boliviensis]
Length = 366
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 87 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 118
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 119 -RTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 177
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 178 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 218
>gi|395824119|ref|XP_003785318.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 3 [Otolemur garnettii]
Length = 366
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C L + +C++++ + +
Sbjct: 87 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVCRTSLRQQNSCYIKNKEIF--------- 136
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 137 -------------------CKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 177
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 178 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 218
>gi|195400977|ref|XP_002059092.1| GJ15180 [Drosophila virilis]
gi|194141744|gb|EDW58161.1| GJ15180 [Drosophila virilis]
Length = 498
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 32/146 (21%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V + WHA+C+RC EC Q L + C
Sbjct: 27 CAGCNKPILDKFLLNVL-ERAWHASCVRCCECLQPLTDKC-------------------- 65
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+ K YC+ D+ R +GTKC C D V + ++K++H+ CF C
Sbjct: 66 ----------FSRESKLYCRNDFFRRYGTKCSGCGQGIAPSDLVRKPRDKVFHLNCFTCC 115
Query: 127 VCGKQLVPGDEFALREDGLF-CKDDH 151
+C KQL G++ + +D F CKDD+
Sbjct: 116 ICRKQLSTGEQLYVLDDNKFICKDDY 141
>gi|195130757|ref|XP_002009817.1| GI15570 [Drosophila mojavensis]
gi|193908267|gb|EDW07134.1| GI15570 [Drosophila mojavensis]
Length = 503
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 32/146 (21%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V + WHA+C+RC EC Q L + C
Sbjct: 27 CAGCNKPILDKFLLNVL-ERAWHASCVRCCECLQPLTDKC-------------------- 65
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+ K YC+ D+ R +GTKC C D V + ++K++H+ CF C
Sbjct: 66 ----------FSRESKLYCRNDFFRRYGTKCSGCGQGIAPSDLVRKPRDKVFHLNCFTCC 115
Query: 127 VCGKQLVPGDEFALREDGLF-CKDDH 151
+C KQL G++ + +D F CKDD+
Sbjct: 116 ICRKQLSTGEQLYVLDDNKFICKDDY 141
>gi|134284361|ref|NP_954629.2| LIM/homeobox protein Lhx6 isoform 2 [Homo sapiens]
gi|297685272|ref|XP_002820219.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Pongo abelii]
Length = 377
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 98 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 129
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 130 -RTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 188
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 189 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 229
>gi|297270226|ref|XP_002800034.1| PREDICTED: LIM/homeobox protein Lhx6 [Macaca mulatta]
Length = 366
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 87 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 118
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 119 -RTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 177
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 178 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 218
>gi|47207847|emb|CAF94375.1| unnamed protein product [Tetraodon nigroviridis]
Length = 188
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 74/150 (49%), Gaps = 29/150 (19%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S+C CG I D+Y+L+V DL WH CL C T CK
Sbjct: 57 SVCTSCGQDIVDRYLLKVN-DLCWHVRCLSC-------------------TVCKTS---- 92
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
L + +C++++ + +CK DY R +GT+C +C N D+V R + +H+ CF
Sbjct: 93 -----LGRHVSCYIKEKQVFCKLDYFRRYGTRCARCGRNIGSSDWVRRVRGSTFHLACFS 147
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
C C +QL G+E L E+ +FC+ +E M
Sbjct: 148 CSSCKRQLSTGEECGLLENRVFCRPHYEMM 177
>gi|348570158|ref|XP_003470864.1| PREDICTED: LIM/homeobox protein Lhx6-like [Cavia porcellus]
Length = 363
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 69 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 100
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 101 -RTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 159
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 160 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 200
>gi|334191691|ref|NP_001229263.1| LIM/homeobox protein Lhx6 isoform 4 [Homo sapiens]
gi|90185239|sp|Q9UPM6.2|LHX6_HUMAN RecName: Full=LIM/homeobox protein Lhx6; Short=LIM homeobox protein
6; AltName: Full=LIM/homeobox protein Lhx6.1
gi|7018428|emb|CAB66505.1| hypothetical protein [Homo sapiens]
gi|74353529|gb|AAI03938.1| LIM homeobox 6 [Homo sapiens]
gi|117646920|emb|CAL37575.1| hypothetical protein [synthetic construct]
gi|119607922|gb|EAW87516.1| LIM homeobox 6, isoform CRA_b [Homo sapiens]
gi|119607923|gb|EAW87517.1| LIM homeobox 6, isoform CRA_b [Homo sapiens]
gi|158260677|dbj|BAF82516.1| unnamed protein product [Homo sapiens]
gi|189054037|dbj|BAG36544.1| unnamed protein product [Homo sapiens]
Length = 363
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 69 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 100
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 101 -RTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 159
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 160 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 200
>gi|410978995|ref|XP_003995872.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Felis catus]
Length = 363
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 69 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 100
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 101 -RTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 159
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 160 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 200
>gi|390458313|ref|XP_003732090.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 4 [Callithrix jacchus]
Length = 366
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 87 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 118
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 119 -RTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 177
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 178 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 218
>gi|5738958|dbj|BAA83422.1| LIM-homeodomain (LHX) protein 6.1a [Homo sapiens]
Length = 363
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 69 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 100
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 101 -RTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 159
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 160 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 200
>gi|340721020|ref|XP_003398925.1| PREDICTED: LIM/homeobox protein Lhx9-like [Bombus terrestris]
Length = 391
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 66/141 (46%), Gaps = 30/141 (21%)
Query: 13 QIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDE 72
+I +++ L+ A D WH CLRC C C V L
Sbjct: 44 EIAERWYLKAA-DRAWHCGCLRC----------CHCRVP------------------LAA 74
Query: 73 NCTCFVRDGKTYCKRDYVRLFG-TKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQ 131
TCF RDG YCK DY RLF ++C +C + VMRA++ +YHV CF C CG
Sbjct: 75 ELTCFARDGNIYCKEDYYRLFAVSRCSRCRAGIFATELVMRARDLVYHVACFTCASCGTP 134
Query: 132 LVPGDEFALREDGLFCKDDHE 152
L GD F R+ ++C+ +E
Sbjct: 135 LNKGDHFGQRDGLVYCRPHYE 155
>gi|281337700|gb|EFB13284.1| hypothetical protein PANDA_004030 [Ailuropoda melanoleuca]
Length = 360
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 71 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 102
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 103 -RTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 161
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 162 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 202
>gi|426362927|ref|XP_004048601.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Gorilla gorilla
gorilla]
Length = 384
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 91 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 122
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 123 -RTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 181
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 182 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 222
>gi|410043125|ref|XP_003951564.1| PREDICTED: LIM/homeobox protein Lhx6 [Pan troglodytes]
Length = 366
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C L + +C++++ + +
Sbjct: 87 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVCRTSLRQQNSCYIKNKEIF--------- 136
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 137 -------------------CKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 177
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 178 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 218
>gi|297685274|ref|XP_002820220.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 3 [Pongo abelii]
Length = 366
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 78/161 (48%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C L +
Sbjct: 87 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVCRTSLRQ--------------------- 124
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
+N +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 125 ------QN-SCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 177
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 178 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 218
>gi|167773589|gb|ABZ92229.1| LIM homeobox 6 [synthetic construct]
Length = 363
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 69 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 100
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 101 -RTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 159
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 160 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 200
>gi|402896489|ref|XP_003911330.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx6 [Papio
anubis]
Length = 390
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 98 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 129
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 130 -RTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 188
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 189 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 229
>gi|71361857|gb|AAZ30032.1| LIM homeodomain protein, partial [Gallus gallus]
Length = 235
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C L + +C++++ + +
Sbjct: 29 VCSSCGLEILDRYLLKV-NNLIWHVRCLECSVCRTSLRQQHSCYIKNKEIF--------- 78
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 79 -------------------CKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 119
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 120 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 160
>gi|390458307|ref|XP_002806566.2| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Callithrix jacchus]
Length = 363
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 69 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 100
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 101 -RTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 159
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 160 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 200
>gi|18858979|ref|NP_571282.1| LIM homeobox 1b [Danio rerio]
gi|2155289|gb|AAB58796.1| LIM class homeodomain protein [Danio rerio]
gi|190336839|gb|AAI62280.1| LIM homeobox 1b [Danio rerio]
gi|190340149|gb|AAI62303.1| LIM homeobox 1b [Danio rerio]
Length = 402
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 79/159 (49%), Gaps = 35/159 (22%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WHA C++C +C C + D
Sbjct: 4 CAGCERPILDRFLLSVL-DRAWHAKCVQCCDC--------KCSLTD-------------- 40
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
CF R+G+ YCK D+ R +GTKC C D V +A++K++H+ CF C+
Sbjct: 41 --------RCFSREGRLYCKNDFFRRYGTKCGGCAQGISPSDLVRKARSKVFHLNCFTCI 92
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDHEGMDKSSNGENNN 164
+C KQL G+E + L E CK+D+ +SNG++ N
Sbjct: 93 MCNKQLSTGEELYILDEYKFVCKEDYL---NNSNGKDTN 128
>gi|296482369|tpg|DAA24484.1| TPA: LIM homeobox 6 isoform 2 [Bos taurus]
Length = 377
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 98 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 129
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 130 -RTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 188
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 189 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 229
>gi|195440764|ref|XP_002068210.1| GK10148 [Drosophila willistoni]
gi|194164295|gb|EDW79196.1| GK10148 [Drosophila willistoni]
Length = 636
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 66/143 (46%), Gaps = 32/143 (22%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
LC GCG +IHD+Y++ V + WH CL C C L
Sbjct: 269 LCEGCGQKIHDRYLMNVG-EANWHEQCLACCYCGMQLHH--------------------- 306
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRA-KNKIYHVQCFC 124
TC+VR+ K YCK DY RLFG KC C ++ VMR N ++H+ CF
Sbjct: 307 ---------TCYVRNSKLYCKLDYDRLFGVKCAACCHAILPQELVMRPIPNYVFHLPCFV 357
Query: 125 CVVCGKQLVPGDEFALREDGLFC 147
C C L G++F LR+ LFC
Sbjct: 358 CYACRLPLQKGEQFMLRDGQLFC 380
>gi|344271981|ref|XP_003407815.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Loxodonta africana]
Length = 392
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 98 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 129
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 130 -RTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 188
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 189 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 229
>gi|301760410|ref|XP_002916006.1| PREDICTED: LIM/homeobox protein Lhx6-like [Ailuropoda melanoleuca]
Length = 390
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C L + +C++++ + +
Sbjct: 96 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVCRTSLRQQNSCYIKNKEIF--------- 145
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 146 -------------------CKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 186
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 187 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 227
>gi|195354923|ref|XP_002043945.1| GM13699 [Drosophila sechellia]
gi|194129190|gb|EDW51233.1| GM13699 [Drosophila sechellia]
Length = 424
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 32/146 (21%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V + WHA+C+RC EC Q L + C
Sbjct: 27 CAGCNKPILDKFLLNVL-ERAWHASCVRCCECLQPLTDKC-------------------- 65
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+ K YC+ D+ R +GTKC C D V + ++K++H+ CF C
Sbjct: 66 ----------FSRESKLYCRNDFFRRYGTKCSGCGQGIAPSDLVRKPRDKVFHLNCFTCC 115
Query: 127 VCGKQLVPGDEFALREDGLF-CKDDH 151
+C KQL G++ + +D F CKDD+
Sbjct: 116 ICRKQLSTGEQLYVLDDNKFICKDDY 141
>gi|410978997|ref|XP_003995873.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Felis catus]
Length = 404
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 87 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 118
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 119 -RTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 177
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 178 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 218
>gi|390458311|ref|XP_003732089.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 3 [Callithrix jacchus]
Length = 381
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C L + +C++++ + +
Sbjct: 87 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVCRTSLRQQNSCYIKNKEIF--------- 136
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 137 -------------------CKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 177
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 178 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 218
>gi|117645548|emb|CAL38240.1| hypothetical protein [synthetic construct]
Length = 363
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 69 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 100
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 101 -RTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFTC 159
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 160 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 200
>gi|440906624|gb|ELR56864.1| LIM/homeobox protein Lhx6, partial [Bos grunniens mutus]
Length = 360
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C L + +C++++ + +
Sbjct: 71 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVCRTSLRQQNSCYIKNKEIF--------- 120
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 121 -------------------CKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 161
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 162 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 202
>gi|403266043|ref|XP_003925207.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Saimiri boliviensis
boliviensis]
Length = 381
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C L + +C++++ + +
Sbjct: 87 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVCRTSLRQQNSCYIKNKEIF--------- 136
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 137 -------------------CKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 177
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 178 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 218
>gi|350396214|ref|XP_003484481.1| PREDICTED: LIM/homeobox protein Lhx9-like [Bombus impatiens]
Length = 417
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 70/155 (45%), Gaps = 30/155 (19%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCGGQI ++++L +A D WH CL+C+ C L E
Sbjct: 194 CAGCGGQIVERWLL-LAMDRYWHNGCLKCSYCGAALAE---------------------- 230
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ R G CK DY R+FG+ C C + VMRA ++H +CF
Sbjct: 231 -----IGHSCYTRSGMILCKSDYRRMFGSSGACAGCGNAIPATELVMRAGGSVFHQKCFT 285
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSN 159
C CG QLV GD + L C+ D + KSS+
Sbjct: 286 CSKCGNQLVSGDRYYLLSGSPVCETDWHKIVKSSS 320
>gi|350579610|ref|XP_003480648.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx6-like [Sus
scrofa]
Length = 332
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C L + +C++++ + +
Sbjct: 98 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVCRTSLRQQNSCYIKNKEIF--------- 147
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 148 -------------------CKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 188
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 189 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 229
>gi|395824115|ref|XP_003785316.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Otolemur garnettii]
Length = 392
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 98 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 129
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 130 -RTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 188
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 189 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 229
>gi|301623765|ref|XP_002941184.1| PREDICTED: LIM/homeobox protein Lhx6-like [Xenopus (Silurana)
tropicalis]
Length = 389
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 29/149 (19%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 95 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 126
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L ++ +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 127 -RTSLRQHNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 185
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGM 154
C +QL G+EF L E+ + C+ ++ M
Sbjct: 186 YSCKRQLSTGEEFGLVEEKVLCRIHYDTM 214
>gi|297270222|ref|XP_001089041.2| PREDICTED: LIM/homeobox protein Lhx6 isoform 3 [Macaca mulatta]
Length = 392
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 98 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 129
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 130 -RTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 188
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 189 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 229
>gi|134284359|ref|NP_055183.2| LIM/homeobox protein Lhx6 isoform 1 [Homo sapiens]
gi|297685270|ref|XP_002820218.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Pongo abelii]
gi|221042862|dbj|BAH13108.1| unnamed protein product [Homo sapiens]
Length = 392
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 98 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 129
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 130 -RTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 188
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 189 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 229
>gi|397526998|ref|XP_003833397.1| PREDICTED: LIM/homeobox protein Lhx6 [Pan paniscus]
Length = 377
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C L + +C++++ + +
Sbjct: 83 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVCRTSLRQQNSCYIKNKEIF--------- 132
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 133 -------------------CKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 173
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 174 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 214
>gi|332832786|ref|XP_001135172.2| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Pan troglodytes]
Length = 392
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 98 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 129
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 130 -RTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 188
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 189 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 229
>gi|300797193|ref|NP_001179777.1| LIM/homeobox protein Lhx6 [Bos taurus]
gi|296482368|tpg|DAA24483.1| TPA: LIM homeobox 6 isoform 1 [Bos taurus]
Length = 392
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 98 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 129
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 130 -RTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 188
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 189 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 229
>gi|157118342|ref|XP_001653180.1| lim homeobox protein [Aedes aegypti]
gi|108883303|gb|EAT47528.1| AAEL001380-PA [Aedes aegypti]
Length = 387
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 77/149 (51%), Gaps = 32/149 (21%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
+LC C I D+YI++V D+ +H CL+C C L +CF+RDGK
Sbjct: 124 TLCGQCCSPICDRYIMKVV-DISYHERCLQCTSCAIRLMH--SCFMRDGK---------- 170
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFG-TKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
YC+ DY RL+G +C C ++ VMRA + ++H++CF
Sbjct: 171 ------------------LYCRFDYERLYGRNRCLGCGEKIGADELVMRALDNVFHLKCF 212
Query: 124 CCVVCGKQLVPGDEFALREDGLFCKDDHE 152
CVVCG +L GD++ +++ LFC+ D+E
Sbjct: 213 ICVVCGVRLQKGDQYVIKQSQLFCRPDYE 241
>gi|358339076|dbj|GAA47203.1| LIM/homeobox protein Lhx2 [Clonorchis sinensis]
Length = 761
Score = 87.8 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 47/155 (30%), Positives = 67/155 (43%), Gaps = 33/155 (21%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K RL LC GCG +I ++L ++ WH CLRC EC + L +CF R G YCK D
Sbjct: 107 KCRLMLCTGCGTKIMQSHLLCLSDGELWHTECLRCCECGKSLHAEASCFNRSGSIYCKED 166
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFG-----TKCEKCNLNFKREDFVMRAKN 115
Y + LFG C C + + ++R+++
Sbjct: 167 YHT----------------------------LFGFASRSISCAVCKIPIGPHELIIRSQS 198
Query: 116 KIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDD 150
++H CF C C + L PGD +AL + C D
Sbjct: 199 SVFHYVCFNCRQCNRALQPGDRYALIDGQPVCHAD 233
>gi|350396477|ref|XP_003484565.1| PREDICTED: LIM/homeobox protein Lhx5-like [Bombus impatiens]
Length = 419
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 70/146 (47%), Gaps = 32/146 (21%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I DQY+L V D WH C+RC +C L + C
Sbjct: 5 CAGCEKPIMDQYLLNVL-DRAWHVECVRCFDCRTTLQDKC-------------------- 43
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+ K +C+ D+ R +GTKC C +D V +A++K++H+ CF C+
Sbjct: 44 ----------FSREAKLFCREDFFRRYGTKCSGCLQGISPQDLVRKARDKVFHLNCFTCL 93
Query: 127 VCGKQLVPGDEFALREDGLF-CKDDH 151
VC KQ+ G+E + +D F CK D+
Sbjct: 94 VCRKQMSTGEELYVLDDNKFVCKQDY 119
>gi|47224946|emb|CAG06516.1| unnamed protein product [Tetraodon nigroviridis]
Length = 408
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 71/146 (48%), Gaps = 32/146 (21%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V D WH C++C EC L E C
Sbjct: 4 CAGCERPILDRFLLNVL-DRAWHVKCVQCCECKCNLTEKC-------------------- 42
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
F R+G+ YCK D+ R FGTKC C D V RA++K++H+ CF C+
Sbjct: 43 ----------FSREGRLYCKNDFFRRFGTKCGGCFQGISPNDLVRRARSKVFHLNCFTCM 92
Query: 127 VCGKQLVPGDE-FALREDGLFCKDDH 151
+C KQL G+E + + E+ CK+D+
Sbjct: 93 MCNKQLSTGEELYIIDENKFVCKEDY 118
>gi|340377757|ref|XP_003387395.1| PREDICTED: LIM/homeobox protein Lhx5-like [Amphimedon
queenslandica]
Length = 272
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 66/141 (46%), Gaps = 31/141 (21%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C GC I ++++++V D WH C++C++C L E C
Sbjct: 5 ICAGCSEPIMERFLMKVL-DKSWHVQCVKCSDCQCLLSEKC------------------- 44
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
F RD K YC+ D+ R +GT+C C ED V R NKIYHVQCF C
Sbjct: 45 -----------FSRDNKLYCRSDFFRQYGTQCASCKEGLCPEDLVRRGVNKIYHVQCFKC 93
Query: 126 VVCGKQLVPGDEFALREDGLF 146
VC +QL G++ L + F
Sbjct: 94 SVCQRQLNTGEQLYLVQGEKF 114
>gi|449478466|ref|XP_002188127.2| PREDICTED: LIM/homeobox protein Lhx6 [Taeniopygia guttata]
Length = 421
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 127 VCSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 158
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 159 -RTSLRQQHSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 217
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 218 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 258
>gi|122934839|gb|ABM68157.1| LHX6 [Lagothrix lagotricha]
Length = 198
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 74/149 (49%), Gaps = 29/149 (19%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C L +
Sbjct: 69 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVCRTSLRQ--------------------- 106
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
+N +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 107 ------QN-SCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 159
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGM 154
C +QL G+EF L E+ + C+ ++ M
Sbjct: 160 FSCKRQLSTGEEFGLVEEKVLCRIHYDTM 188
>gi|189238568|ref|XP_969484.2| PREDICTED: similar to LIM homeobox 1b [Tribolium castaneum]
Length = 497
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 80/163 (49%), Gaps = 32/163 (19%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
L C C I D+++L V + WHA C+RC +CH L + C
Sbjct: 151 LISCAACDKPILDKFLLNVL-ERTWHADCVRCFDCHAPLTDKC----------------- 192
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F R+ K +C+ D+ R +GTKC C D V +A++K++H+ CF
Sbjct: 193 -------------FSRENKLFCRNDFFRRYGTKCGGCGQGISPSDLVRKARDKVFHLNCF 239
Query: 124 CCVVCGKQLVPGDEFALREDGLF-CKDDHEGMDKSSNGENNNN 165
C+VC KQL G+E + +D F CKDD+ +K++ ++++
Sbjct: 240 TCLVCRKQLSTGEELYVLDDNKFICKDDYLNGNKTNKSPDDSS 282
>gi|124111083|gb|ABM91915.1| LHX6 [Pan troglodytes]
Length = 198
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 74/149 (49%), Gaps = 29/149 (19%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C L +
Sbjct: 69 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVCRTSLRQ--------------------- 106
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
+N +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 107 ------QN-SCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 159
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGM 154
C +QL G+EF L E+ + C+ ++ M
Sbjct: 160 FSCKRQLSTGEEFGLVEEKVLCRIHYDTM 188
>gi|121483796|gb|ABM54189.1| LHX6 [Pan paniscus]
gi|124054101|gb|ABM89234.1| LHX6 [Pongo pygmaeus]
Length = 198
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 74/149 (49%), Gaps = 29/149 (19%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C L +
Sbjct: 69 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVCRTSLRQ--------------------- 106
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
+N +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 107 ------QN-SCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 159
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGM 154
C +QL G+EF L E+ + C+ ++ M
Sbjct: 160 FSCKRQLSTGEEFGLVEEKVLCRIHYDTM 188
>gi|380029439|ref|XP_003698380.1| PREDICTED: uncharacterized protein LOC100872944 [Apis florea]
Length = 478
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 70/155 (45%), Gaps = 30/155 (19%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCGGQI ++++L +A D WH CL+C+ C L E
Sbjct: 255 CAGCGGQIVERWLL-LAMDRYWHNGCLKCSYCGAALAE---------------------- 291
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ R G CK DY R+FG+ C C + VMRA ++H +CF
Sbjct: 292 -----IGHSCYTRSGMILCKSDYRRMFGSSGACAGCGNAIPATELVMRAGGSVFHQKCFT 346
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSN 159
C CG QLV GD + L C+ D + KSS+
Sbjct: 347 CSKCGNQLVSGDRYYLLSGSPVCETDWHKIVKSSS 381
>gi|355567904|gb|EHH24245.1| LIM/homeobox protein LMX1B [Macaca mulatta]
Length = 367
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 65/116 (56%), Gaps = 5/116 (4%)
Query: 73 NCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQL 132
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFCC VC +QL
Sbjct: 56 TTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQL 115
Query: 133 VPGDEFALREDGLFCKDDHEG----MDKSSNGENNN-NNTNINNNLHNLNNEGSNS 183
GDEF L+E L CK D+E + S E+++ + + + ++ +GS S
Sbjct: 116 RKGDEFVLKEGQLLCKGDYEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQS 171
>gi|195126142|ref|XP_002007533.1| GI12337 [Drosophila mojavensis]
gi|193919142|gb|EDW18009.1| GI12337 [Drosophila mojavensis]
Length = 586
Score = 87.4 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 49/149 (32%), Positives = 76/149 (51%), Gaps = 30/149 (20%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
L+ C C I D+YI+RV D +H CL+C+ C L +C+ RDGK YC+ DY
Sbjct: 227 LNQCTYCCQPICDRYIMRVV-DNSFHEGCLKCSACSLHLVH--SCYARDGKLYCRIDY-- 281
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
+R Y+R +C C ++ VMR++ I+H++CF
Sbjct: 282 ----------------------ERLYLR---NRCLGCGHKIAADELVMRSQENIFHLKCF 316
Query: 124 CCVVCGKQLVPGDEFALREDGLFCKDDHE 152
CVVCG L G+++ +++ LFC+ D+E
Sbjct: 317 ACVVCGAVLKKGEQYVVKQGQLFCRFDYE 345
>gi|157118344|ref|XP_001653181.1| lim homeobox protein [Aedes aegypti]
gi|108883304|gb|EAT47529.1| AAEL001373-PA [Aedes aegypti]
Length = 391
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 68/147 (46%), Gaps = 31/147 (21%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C GCG +I D+Y ++++PD WH CL C CH L
Sbjct: 17 ICEGCGQKIKDRYFMKLSPDQYWHEQCLLCCICHIQL----------------------- 53
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
N +C++++ K YCK DY R+ C C + VMRAK +YH+ CF C
Sbjct: 54 -------NQSCYMKNTKLYCKDDYYRV-SRDCYGCGERIAPNEMVMRAKALVYHLNCFLC 105
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHE 152
C + L G+ F+LR L C+ D E
Sbjct: 106 YTCNRPLQKGEPFSLRAGKLICQHDLE 132
>gi|350404759|ref|XP_003487211.1| PREDICTED: LIM/homeobox protein Lhx9-like [Bombus impatiens]
Length = 441
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 66/141 (46%), Gaps = 30/141 (21%)
Query: 13 QIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDE 72
+I +++ L+ A D WH CLRC C C V L
Sbjct: 94 EIAERWYLKAA-DRAWHCGCLRC----------CHCRVP------------------LAA 124
Query: 73 NCTCFVRDGKTYCKRDYVRLFG-TKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQ 131
TCF RDG YCK DY RLF ++C +C + VMRA++ +YHV CF C CG
Sbjct: 125 ELTCFARDGNIYCKEDYYRLFAVSRCSRCRAGIFATELVMRARDLVYHVACFTCASCGTP 184
Query: 132 LVPGDEFALREDGLFCKDDHE 152
L GD F R+ ++C+ +E
Sbjct: 185 LNKGDHFGQRDGLVYCRPHYE 205
>gi|410924249|ref|XP_003975594.1| PREDICTED: LIM/homeobox protein Lhx8-like [Takifugu rubripes]
Length = 338
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 34/167 (20%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S+C C I D+Y+L+V DL WH CL C T CK
Sbjct: 56 SVCTSCNKDIVDRYLLKVN-DLCWHVRCLSC-------------------TVCKTS---- 91
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
L + +C++++ + +CK DY R +GT+C +C N D+V R + +H+ CF
Sbjct: 92 -----LGRHVSCYIKEKQVFCKLDYFRRYGTRCTRCGRNINSSDWVRRVRGSTFHLACFS 146
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEGMDKS-----SNGENNNNN 166
C C +QL G+E L E+ +FC+ +E + ++ NGE ++N+
Sbjct: 147 CSSCKRQLSTGEECGLLENRVFCRPHYEMVVENIKRAKKNGEPDSND 193
>gi|338720274|ref|XP_001916843.2| PREDICTED: LIM/homeobox protein Lhx6-like [Equus caballus]
Length = 239
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 74/149 (49%), Gaps = 29/149 (19%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C L +
Sbjct: 69 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVCRTSLRQ--------------------- 106
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
+N +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 107 ------QN-SCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 159
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGM 154
C +QL G+EF L E+ + C+ ++ M
Sbjct: 160 FSCKRQLSTGEEFGLVEEKVLCRIHYDTM 188
>gi|29500723|gb|AAO74860.1| LMX1B [Canis lupus familiaris]
Length = 309
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 65/116 (56%), Gaps = 5/116 (4%)
Query: 73 NCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQL 132
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFCC VC +QL
Sbjct: 9 TTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQL 68
Query: 133 VPGDEFALREDGLFCKDDHEG----MDKSSNGENNN-NNTNINNNLHNLNNEGSNS 183
GDEF L+E L CK D+E + S E+++ + + + ++ +GS S
Sbjct: 69 RKGDEFVLKEGQLLCKGDYEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQS 124
>gi|441636332|ref|XP_003259172.2| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx4 [Nomascus
leucogenys]
Length = 415
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 75/183 (40%), Gaps = 45/183 (24%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
++ C GC I D++IL+V D WH++CL+CA+C L + CF R G Y
Sbjct: 70 KIPQCAGCNQHILDKFILKVL-DRHWHSSCLKCADCQMQLADR--CFSRAGSVY------ 120
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQC 122
CK D+ + FGTKC C V +A++ +YH+ C
Sbjct: 121 ----------------------CKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHC 158
Query: 123 FCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNNTNINNNLHNLNNEGSN 182
F C++C +QL GDEF + S G T L L N N
Sbjct: 159 FACIICNRQLATGDEFYXXD--------------SEAGAKRPRTTITAKQLETLKNAYKN 204
Query: 183 SGK 185
S K
Sbjct: 205 SPK 207
>gi|47219374|emb|CAG01537.1| unnamed protein product [Tetraodon nigroviridis]
Length = 390
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 71/139 (51%), Gaps = 32/139 (23%)
Query: 14 IHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDEN 73
I D+++L+V D WH C+ C EC CT SEK
Sbjct: 4 ILDRFLLKVL-DRPWHVKCVHCCEC------KCTL---------------SEK------- 34
Query: 74 CTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLV 133
CF R+GK YCK D+ R FGTKC+ C D V RAK+K++H+ CF C++C KQL
Sbjct: 35 --CFSREGKLYCKNDFFRRFGTKCDGCAQGILPSDLVRRAKSKVFHLNCFTCMICNKQLS 92
Query: 134 PGDE-FALREDGLFCKDDH 151
G+E + L E CK+D+
Sbjct: 93 TGEELYILDEFKFVCKEDY 111
>gi|270009219|gb|EFA05667.1| lim1 [Tribolium castaneum]
Length = 511
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 72/149 (48%), Gaps = 32/149 (21%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
L C C I D+++L V + WHA C+RC +CH L + C
Sbjct: 75 LISCAACDKPILDKFLLNVL-ERTWHADCVRCFDCHAPLTDKC----------------- 116
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
F R+ K +C+ D+ R +GTKC C D V +A++K++H+ CF
Sbjct: 117 -------------FSRENKLFCRNDFFRRYGTKCGGCGQGISPSDLVRKARDKVFHLNCF 163
Query: 124 CCVVCGKQLVPGDEFALREDGLF-CKDDH 151
C+VC KQL G+E + +D F CKDD+
Sbjct: 164 TCLVCRKQLSTGEELYVLDDNKFICKDDY 192
>gi|395505631|ref|XP_003757143.1| PREDICTED: LIM/homeobox protein Lhx6 [Sarcophilus harrisii]
Length = 363
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 69 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 100
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 101 -RTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIFASDWVRRARGNAYHLACFAC 159
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 160 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 200
>gi|209489466|gb|ACI49225.1| hypothetical protein Csp3_JD05.010 [Caenorhabditis angaria]
Length = 344
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 75/162 (46%), Gaps = 32/162 (19%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+S C C I D+Y+ V WH CLRC++C +
Sbjct: 1 MSECAACARPILDRYVFTVLGKC-WHQECLRCSDCAAPM--------------------- 38
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
TCF RDG CK D+ R +G +C C+ N +E+ V RA++K++H+QCF
Sbjct: 39 ---------TMTCFSRDGLILCKNDFSRRYGQRCAGCDGNLDKEELVRRARDKVFHIQCF 89
Query: 124 CCVVCGKQLVPGDEFALREDGLF-CKDDHEGMDKSSNGENNN 164
C VC + L GD+ + E F C+ D + K+S +++
Sbjct: 90 QCSVCQRLLATGDQLYILEGNRFVCQTDFQNATKTSTPTSSH 131
>gi|328781883|ref|XP_396576.4| PREDICTED: hypothetical protein LOC413125, partial [Apis mellifera]
Length = 417
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 70/155 (45%), Gaps = 30/155 (19%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCGGQI ++++L +A D WH CL+C+ C L E
Sbjct: 193 CAGCGGQIVERWLL-LAMDRYWHNGCLKCSYCGAALAEI--------------------- 230
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+C+ R G CK DY R+FG+ C C + VMRA ++H +CF
Sbjct: 231 ------GHSCYTRSGMILCKSDYRRMFGSSGACAGCGNAIPATELVMRAGGSVFHQKCFT 284
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSN 159
C CG QLV GD + L C+ D + KSS+
Sbjct: 285 CSKCGNQLVSGDRYYLLSGSPVCETDWHKIVKSSS 319
>gi|350418514|ref|XP_003491882.1| PREDICTED: LIM/homeobox protein Lhx3-like [Bombus impatiens]
Length = 463
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 70/149 (46%), Gaps = 36/149 (24%)
Query: 7 CVGCGGQIHDQYILRVAPDLE--WHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
C GC I D+Y+LRV LE WHA CL C +C L + CF R+G +CK D+
Sbjct: 91 CGGCQEAILDKYVLRV---LERCWHARCLTCRDCGARLTDK--CFARNGHVFCKDDF--- 142
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
F R FGTKC C V RA+ IYH+ CF
Sbjct: 143 ------------FKR-------------FGTKCAGCGQGLAPSQVVRRAQELIYHLTCFS 177
Query: 125 CVVCGKQLVPGDEFALRED-GLFCKDDHE 152
C +C +QL GDEF L ED L CK D+E
Sbjct: 178 CALCSRQLDTGDEFYLMEDRKLVCKPDYE 206
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 5/105 (4%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCF-VRDGKTYCKR 59
KR + C GCG + ++R A +L +H C CA C + LD + + D K CK
Sbjct: 144 KRFGTKCAGCGQGLAPSQVVRRAQELIYHLTCFSCALCSRQLDTGDEFYLMEDRKLVCKP 203
Query: 60 DYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNF 104
DY ++ + D DG KR + + E L +
Sbjct: 204 DYEQAKAKELADGGSI----DGDQPNKRPRTTITAKQLETLKLAY 244
>gi|334311482|ref|XP_001364897.2| PREDICTED: LIM/homeobox protein Lhx6 [Monodelphis domestica]
Length = 391
Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG +I D+Y+L+V +L WH CL C+ C
Sbjct: 97 ICSSCGLEILDRYLLKVN-NLIWHVRCLECSVC--------------------------- 128
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
L + +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 129 -RTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIFASDWVRRARGNAYHLACFAC 187
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNN 166
C +QL G+EF L E+ + C+ ++ M ++ N N
Sbjct: 188 FSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN 228
>gi|357631671|gb|EHJ79140.1| lim1 [Danaus plexippus]
Length = 162
Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 72/146 (49%), Gaps = 32/146 (21%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D+++L V + WHAAC+RCA+C L + C
Sbjct: 3 CAGCEKPILDKFLLHVL-ERAWHAACVRCADCRAPLADKC-------------------- 41
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
+ RD K +C+ D+ R +GTKC C D V +A+ K++H+ CF C+
Sbjct: 42 ----------YSRDNKLFCRNDFFRRYGTKCSGCGHGISPSDLVRKAREKVFHLNCFTCL 91
Query: 127 VCGKQLVPGDEFALREDGLF-CKDDH 151
VC KQL G+E + +D F CK+D+
Sbjct: 92 VCRKQLSTGEELYVLDDNKFICKEDY 117
>gi|339238047|ref|XP_003380578.1| LIM/homeobox protein Lhx9 [Trichinella spiralis]
gi|316976506|gb|EFV59791.1| LIM/homeobox protein Lhx9 [Trichinella spiralis]
Length = 337
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 72/159 (45%), Gaps = 29/159 (18%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I DQ+ L VA + WH CLRC C C+
Sbjct: 10 CSGCQATITDQFYLLVA-ERSWHIHCLRCCVC------RCS------------------- 43
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
L+ TCF R +CK DY + F +C +CN +D VMRA++ ++H+ CF CV
Sbjct: 44 ---LETELTCFSRGDLIFCKEDYSKQFSKRCSRCNRVVLPKDLVMRARDYVFHLHCFTCV 100
Query: 127 VCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNN 165
VC + PG F L +GL + H G S+N N +
Sbjct: 101 VCNVPMQPGSLFGLGNNGLIYCNAHCGGTWSANEHGNAS 139
>gi|380012090|ref|XP_003690122.1| PREDICTED: LIM/homeobox protein Lhx3-like [Apis florea]
Length = 465
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 71/152 (46%), Gaps = 36/152 (23%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLE--WHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+ C GC I D+Y+LRV LE WHA CL C +C L + CF R+G +CK D+
Sbjct: 90 IPKCGGCQEAILDKYVLRV---LERCWHARCLTCRDCGARLTDK--CFARNGHVFCKDDF 144
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
F R FGTKC C V RA+ IYH+
Sbjct: 145 ---------------FKR-------------FGTKCAGCGQGLAPSQVVRRAQELIYHLT 176
Query: 122 CFCCVVCGKQLVPGDEFALRED-GLFCKDDHE 152
CF C +C +QL GDEF L ED L CK D+E
Sbjct: 177 CFSCALCSRQLDTGDEFYLMEDRKLVCKPDYE 208
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 5/105 (4%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCF-VRDGKTYCKR 59
KR + C GCG + ++R A +L +H C CA C + LD + + D K CK
Sbjct: 146 KRFGTKCAGCGQGLAPSQVVRRAQELIYHLTCFSCALCSRQLDTGDEFYLMEDRKLVCKP 205
Query: 60 DYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNF 104
DY ++ + D DG KR + + E L +
Sbjct: 206 DYEQAKAKELADGGSI----DGDQPNKRPRTTITAKQLETLKLAY 246
>gi|194747127|ref|XP_001956004.1| GF24815 [Drosophila ananassae]
gi|190623286|gb|EDV38810.1| GF24815 [Drosophila ananassae]
Length = 613
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 69/148 (46%), Gaps = 32/148 (21%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
++ LC GCG +IHD++++ V + WH CL C C
Sbjct: 243 EKNFELCEGCGQKIHDRFLMNVG-EANWHEQCLACCYCG--------------------- 280
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRA-KNKIYH 119
L + TC+VR+ K YCK DY RLFG KC C ++ VMR N ++H
Sbjct: 281 ---------LQLHHTCYVRNSKLYCKMDYDRLFGVKCASCCHAILPQELVMRPIPNFVFH 331
Query: 120 VQCFCCVVCGKQLVPGDEFALREDGLFC 147
+ CF C C L G++F LR+ LFC
Sbjct: 332 LPCFVCYACRLPLQKGEQFLLRDGQLFC 359
>gi|328782955|ref|XP_394135.3| PREDICTED: LIM/homeobox protein Lhx3 [Apis mellifera]
Length = 442
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 71/152 (46%), Gaps = 36/152 (23%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLE--WHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+ C GC I D+Y+LRV LE WHA CL C +C L + CF R+G +CK D+
Sbjct: 88 IPKCGGCQEAILDKYVLRV---LERCWHARCLTCRDCGARLTDK--CFARNGHVFCKDDF 142
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
F R FGTKC C V RA+ IYH+
Sbjct: 143 ---------------FKR-------------FGTKCAGCGQGLAPSQVVRRAQELIYHLT 174
Query: 122 CFCCVVCGKQLVPGDEFALRED-GLFCKDDHE 152
CF C +C +QL GDEF L ED L CK D+E
Sbjct: 175 CFSCALCSRQLDTGDEFYLMEDRKLVCKPDYE 206
Score = 42.4 bits (98), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 5/105 (4%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCF-VRDGKTYCKR 59
KR + C GCG + ++R A +L +H C CA C + LD + + D K CK
Sbjct: 144 KRFGTKCAGCGQGLAPSQVVRRAQELIYHLTCFSCALCSRQLDTGDEFYLMEDRKLVCKP 203
Query: 60 DYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNF 104
DY ++ + D DG KR + + E L +
Sbjct: 204 DYEQAKAKELADGGSI----DGDQPNKRPRTTITAKQLETLKLAY 244
>gi|9971753|gb|AAG10399.1| lim-homeobox transcription factor LHX3 [Homo sapiens]
Length = 397
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 70/154 (45%), Gaps = 6/154 (3%)
Query: 35 CAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFG 94
CA C Q + + F+ +T VSS CF R YCK D+ + FG
Sbjct: 36 CAGCDQHILDR---FILKARTATGTASVSSAATATTPLAERCFSRGESVYCKDDFFKRFG 92
Query: 95 TKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDG-LFCKDDHE- 152
TKC C L V RA++ +YH+ CF CVVC +QL GD+F L ED L CK D+E
Sbjct: 93 TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDDFYLMEDSRLVCKADYET 152
Query: 153 GMDKSSNGENNNNNTNIN-NNLHNLNNEGSNSGK 185
+ + T I L L + + S K
Sbjct: 153 AKQREAEATAKRPRTTITAKQLETLKSAYNTSPK 186
>gi|270002858|gb|EEZ99305.1| LIM homeobox transcription factor 1, beta 2 [Tribolium castaneum]
Length = 353
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 71/139 (51%), Gaps = 31/139 (22%)
Query: 14 IHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDEN 73
I+D+++LR+ D+ +H C++C C L
Sbjct: 6 INDRFLLRIM-DVSYHEHCVQCCACGDRLHH----------------------------- 35
Query: 74 CTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLV 133
TCFV+D K YC+ DY RLF KC C+ E+ VMRA I+H++CF CVVCG +L
Sbjct: 36 -TCFVKDSKLYCRLDYDRLFVKKCLACSERIAPEELVMRASENIFHLRCFVCVVCGIRLQ 94
Query: 134 PGDEFALREDGLFCKDDHE 152
GD + +++ LFC+ D+E
Sbjct: 95 KGDLYVIKQGQLFCRIDYE 113
>gi|322787264|gb|EFZ13400.1| hypothetical protein SINV_02203 [Solenopsis invicta]
Length = 333
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 75/157 (47%), Gaps = 33/157 (21%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCG ++ ++ +L V WH+ CLRC C
Sbjct: 44 CGGCGERVRERTVLCVG-GRTWHSRCLRCCAC---------------------------- 74
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
+ L + +CF+R + YC+ DY FG KC KC + D+V RA+ ++YH+ CF C
Sbjct: 75 ARPLHDQHSCFLRGMRVYCRHDYALAFGAKCAKCGRSVGAGDWVRRARERVYHLACFACD 134
Query: 127 VCGKQLVPGDEFALREDGLFCK----DDHEGMDKSSN 159
C +QL G++FAL + L CK D EG + SS+
Sbjct: 135 ACSRQLSTGEQFALLDARLLCKAHYLDVVEGNNTSSD 171
>gi|443694942|gb|ELT95960.1| hypothetical protein CAPTEDRAFT_39289, partial [Capitella teleta]
Length = 118
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 67/149 (44%), Gaps = 34/149 (22%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S C GCG I D+++L+ A WH CL C C L
Sbjct: 1 SACFGCGQAIADRFLLKAAGR-SWHEECLSCNACGVQLTS-------------------- 39
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKN---KIYHVQ 121
+CF +DG+ CK DY RL+ +C C VMR+ + ++YH
Sbjct: 40 ----------SCFAKDGRLLCKADYARLYSVRCSGCGQAVTGGQLVMRSGDVGGRVYHAS 89
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDD 150
CFCC+ CG QL GD++ +R+ LFC+ D
Sbjct: 90 CFCCIACGHQLSKGDQYYIRDGRLFCQLD 118
>gi|383858395|ref|XP_003704687.1| PREDICTED: LIM/homeobox protein Lhx3-like [Megachile rotundata]
Length = 463
Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 70/149 (46%), Gaps = 36/149 (24%)
Query: 7 CVGCGGQIHDQYILRVAPDLE--WHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
C GC I D+Y+LRV LE WHA CL C +C L + CF R+G +CK D+
Sbjct: 91 CGGCQEAILDKYVLRV---LERCWHARCLTCRDCGARLTDK--CFARNGHVFCKDDF--- 142
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
F R FGTKC C V RA+ +YH+ CF
Sbjct: 143 ------------FKR-------------FGTKCAGCGQGLAPSQVVRRAQELVYHLTCFS 177
Query: 125 CVVCGKQLVPGDEFALRED-GLFCKDDHE 152
C +C +QL GDEF L ED L CK D+E
Sbjct: 178 CALCSRQLDTGDEFYLMEDRKLVCKPDYE 206
Score = 42.4 bits (98), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 5/105 (4%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCF-VRDGKTYCKR 59
KR + C GCG + ++R A +L +H C CA C + LD + + D K CK
Sbjct: 144 KRFGTKCAGCGQGLAPSQVVRRAQELVYHLTCFSCALCSRQLDTGDEFYLMEDRKLVCKP 203
Query: 60 DYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNF 104
DY ++ + D DG KR + + E L +
Sbjct: 204 DYEQAKAKELADGGSI----DGDQPNKRPRTTITAKQLETLKLAY 244
>gi|170032117|ref|XP_001843929.1| lim homeobox protein [Culex quinquefasciatus]
gi|167871878|gb|EDS35261.1| lim homeobox protein [Culex quinquefasciatus]
Length = 453
Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 77/149 (51%), Gaps = 32/149 (21%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
+LC C I D+YI++V D+ +H CL+C C L +CF+RDGK
Sbjct: 4 TLCGQCCSPICDRYIMKVV-DISYHENCLQCTSCAIRLMH--SCFMRDGK---------- 50
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFG-TKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
YC+ DY RL+G +C C ++ VMRA + ++H++CF
Sbjct: 51 ------------------LYCRFDYERLYGRNRCLGCGEKIGADELVMRALDNVFHLKCF 92
Query: 124 CCVVCGKQLVPGDEFALREDGLFCKDDHE 152
CVVCG +L GD++ +++ LFC+ D+E
Sbjct: 93 ICVVCGIRLQKGDQYVIKQSQLFCRPDYE 121
>gi|432868110|ref|XP_004071416.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Oryzias
latipes]
Length = 398
Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 67/147 (45%), Gaps = 31/147 (21%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C GC I D+++LRV + WH C++CA C L C C
Sbjct: 54 VCAGCESPISDRFLLRVN-ERSWHETCVKCAVCLSTLTGTCYC----------------- 95
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
RD YCK DY +LF KC C R + +MR ++YH+ CF C
Sbjct: 96 -------------RDRLLYCKLDYEKLFVRKCSACLQVIGRSELIMRVLGQVYHLGCFSC 142
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHE 152
C ++L GDEF L+E L C+ D+E
Sbjct: 143 CECERRLQRGDEFVLKEGQLLCRMDYE 169
>gi|405963181|gb|EKC28778.1| LIM domain transcription factor LMO4.1 [Crassostrea gigas]
Length = 165
Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 77/167 (46%), Gaps = 33/167 (19%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ C GCG +I D+++L A + WH ACL+C+ C L++
Sbjct: 20 IKACAGCGSRISDRFLLH-AMERFWHTACLKCSCCQTNLEQ------------------- 59
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLF--GTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
L +CF R G CK DY+RLF G C C + + VMR + +YH++
Sbjct: 60 ------LG---SCFTRAGMILCKNDYMRLFCSGGSCAGCGQSIPANEMVMRTQGNVYHLK 110
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNNTN 168
CF C C L PGD F + + C++D+ + G+ N N+ N
Sbjct: 111 CFNCYTCNMPLSPGDRFGVVNGNIICENDYS--KANVKGQVNGNSRN 155
>gi|156373115|ref|XP_001629379.1| predicted protein [Nematostella vectensis]
gi|156216378|gb|EDO37316.1| predicted protein [Nematostella vectensis]
Length = 153
Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 72/155 (46%), Gaps = 30/155 (19%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
+ +C GCG +I D+++L +A D WH CL+C+ C L E T
Sbjct: 16 MRVCAGCGEKIIDRFLL-LALDQYWHVNCLKCSCCEARLGEIGT---------------- 58
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQ 121
+C+ + G CK DYVRL+G C C + VM+ K+YH+
Sbjct: 59 -----------SCYSKGGMILCKTDYVRLYGNSGACAVCAKLIPATELVMKVLGKVYHLH 107
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDK 156
CF C C QLVPGD F + LFC++D + K
Sbjct: 108 CFTCTTCHNQLVPGDRFHVVNGRLFCENDDPNLLK 142
>gi|256071672|ref|XP_002572163.1| lim-only [Schistosoma mansoni]
gi|353229928|emb|CCD76099.1| putative lim-only [Schistosoma mansoni]
Length = 294
Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 70/148 (47%), Gaps = 32/148 (21%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCGG I ++ +L A D WH +CL C+ C LDE
Sbjct: 5 CAGCGGPIVEKTLLN-AIDRFWHTSCLNCSCCGLRLDE---------------------- 41
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+ FVR C++DY++LFG C KC + ++ VMR ++K+YHV CFC
Sbjct: 42 -----LGPSVFVRSNMLLCRQDYLKLFGLSGTCAKCRVQIPPDELVMRCQDKVYHVNCFC 96
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C C L PGD+ + LFC +HE
Sbjct: 97 CTHCHSPLHPGDKVCFMDGNLFC--EHE 122
>gi|170032119|ref|XP_001843930.1| lim homeobox protein [Culex quinquefasciatus]
gi|167871879|gb|EDS35262.1| lim homeobox protein [Culex quinquefasciatus]
Length = 400
Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 72/165 (43%), Gaps = 48/165 (29%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C GCG +I D+Y ++++PD WH CL C C C ++
Sbjct: 16 ICEGCGQKIKDRYFMKISPDQYWHEQCLLC----------CICNIQ-------------- 51
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGT------------------KCEKCNLNFKRE 107
N +CF ++ K YCK DY R++G +C C
Sbjct: 52 ------LNHSCFTKNTKVYCKDDYYRIYGLSQLQQKQQNQQHQQKVSRECYGCGERIAPN 105
Query: 108 DFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHE 152
+ VMRAKN ++H+ CF C C + L G+ F+L+ L C+ D E
Sbjct: 106 EMVMRAKNHVFHLNCFLCYTCNRPLQKGEPFSLKSGKLICQHDLE 150
>gi|324520352|gb|ADY47616.1| LIM domain only protein 3 [Ascaris suum]
Length = 163
Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 87/188 (46%), Gaps = 32/188 (17%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C C +I D+++LR L WH CL+C CH L E K Y K+ +
Sbjct: 4 AVCAACSLRIRDRFMLRALGKL-WHEDCLKCTCCHCRLGE------LGSKLYYKQSMI-- 54
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQC 122
C RDY+RLFG C C+ N + VMRAK+ +YH+QC
Sbjct: 55 -------------------LCARDYLRLFGLTGVCAACDKNIPAFELVMRAKSNVYHLQC 95
Query: 123 FCCVVCGKQLVPGDEFALREDGLFCKDDHEG-MDKSSNGENNNNNTNINNNLHNLNN-EG 180
F C +C + GD++ L ++ + C+ D+E M NN + T I N+ L + E
Sbjct: 96 FACHICNHRFCIGDKYYLCDNKILCQYDYEERMTFLQAAYNNQSFTEITKNIQQLEDFEP 155
Query: 181 SNSGKIQL 188
+G + +
Sbjct: 156 GEAGLVSI 163
>gi|307200797|gb|EFN80850.1| LIM/homeobox protein Lhx3 [Harpegnathos saltator]
Length = 421
Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 71/149 (47%), Gaps = 36/149 (24%)
Query: 7 CVGCGGQIHDQYILRVAPDLE--WHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
C GC I D+Y+LRV LE WHA CL C +C L + CF R+G +C+ D+
Sbjct: 88 CGGCQEVILDKYVLRV---LERCWHARCLTCRDCGARLTDK--CFARNGHVFCREDF--- 139
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
F R FGTKC C+ V RA+ +YH+ CF
Sbjct: 140 ------------FKR-------------FGTKCAGCSQGLSPSQVVRRAQELVYHLTCFS 174
Query: 125 CVVCGKQLVPGDEFALRED-GLFCKDDHE 152
C +C +QL GDEF L ED L CK D+E
Sbjct: 175 CALCSRQLDTGDEFYLMEDRKLVCKPDYE 203
Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 5/105 (4%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCF-VRDGKTYCKR 59
KR + C GC + ++R A +L +H C CA C + LD + + D K CK
Sbjct: 141 KRFGTKCAGCSQGLSPSQVVRRAQELVYHLTCFSCALCSRQLDTGDEFYLMEDRKLVCKP 200
Query: 60 DYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNF 104
DY ++ + D DG KR + + E L +
Sbjct: 201 DYEQAKAKELADGGSI----DGDQPNKRPRTTITAKQLETLKLAY 241
>gi|125823566|ref|XP_001339831.1| PREDICTED: LIM/homeobox protein Lhx8-like [Danio rerio]
Length = 356
Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 69/150 (46%), Gaps = 29/150 (19%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C C I D+++L+V D+ WHA CL C+ C L E TC+V
Sbjct: 84 AVCTRCREHILDRHLLKVN-DMCWHARCLSCSVCQTTLSEQTTCYV-------------- 128
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
R+ + +CK Y R F T C C D+V RAK +YH+ CF
Sbjct: 129 --------------REREIFCKLHYFRRFQTWCSCCRETLHSSDWVHRAKGNVYHLACFS 174
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
C C +QL G+EFAL + L C+ + M
Sbjct: 175 CFSCKRQLSTGEEFALVGEKLLCRIHYSSM 204
>gi|46276325|gb|AAS86421.1| lhx9 [Oryzias latipes]
Length = 237
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 28/133 (21%)
Query: 22 VAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDG 81
+A D +WH CL+C EC L+ TCF +DG
Sbjct: 1 LAVDKQWHLRCLKCCEC----------------------------KLALESELTCFAKDG 32
Query: 82 KTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALR 141
YCK DY R +C +C+L + VMRA++ +YH+ CF C C K L GD F ++
Sbjct: 33 SIYCKEDYYRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFGMK 92
Query: 142 EDGLFCKDDHEGM 154
+ ++C+ E +
Sbjct: 93 DSLVYCRLHFETL 105
>gi|268567057|ref|XP_002639879.1| C. briggsae CBR-LIN-11 protein [Caenorhabditis briggsae]
Length = 411
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 71/153 (46%), Gaps = 31/153 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C C I D+Y+ V WH +CLRC +C +
Sbjct: 75 CAACAQPILDRYVFTVLGKC-WHQSCLRCCDCRAPM------------------------ 109
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
+ TCF +DG CK DY R +G +C C+ ++ED V RA++K++H++CF C
Sbjct: 110 ------SMTCFSKDGLILCKTDYSRRYGHRCAGCDGKLEKEDLVRRARDKVFHIRCFQCS 163
Query: 127 VCGKQLVPGDEFALREDGLFCKDDHEGMDKSSN 159
VC + L GD+ + E C++D + K+S
Sbjct: 164 VCQRLLDTGDQLYIMEGNRMCQNDFQTATKTST 196
>gi|383857877|ref|XP_003704430.1| PREDICTED: LIM/homeobox protein Awh-like [Megachile rotundata]
Length = 371
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 81/170 (47%), Gaps = 33/170 (19%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCG ++ ++ +L V WH+ CLRC C
Sbjct: 82 CGGCGERVRERTVLCVG-GRTWHSRCLRCFAC---------------------------- 112
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
+ L + +CF++ + YC+ DY FG KC KC + D+V RA+ ++YH+ CF C
Sbjct: 113 ARPLHDQHSCFLKGMRLYCRHDYALTFGAKCAKCGRSVGAGDWVRRARERVYHLACFACD 172
Query: 127 VCGKQLVPGDEFALREDGLFCK----DDHEGMDKSSNGENNNNNTNINNN 172
C +QL G++FAL + L CK D EG + SS+ ++ + + + N
Sbjct: 173 ACSRQLSTGEQFALLDARLLCKAHYLDVVEGNNTSSDEGGDSESGHKSGN 222
>gi|307174398|gb|EFN64917.1| LIM/homeobox protein Lhx3 [Camponotus floridanus]
Length = 467
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 70/149 (46%), Gaps = 36/149 (24%)
Query: 7 CVGCGGQIHDQYILRVAPDLE--WHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
C GC I D+Y+LRV LE WHA CL C +C L + CF R+G +CK D+
Sbjct: 87 CGGCQEVILDKYVLRV---LERCWHARCLTCRDCGARLTDK--CFARNGHVFCKDDF--- 138
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
F R FGTKC C V RA+ +YH+ CF
Sbjct: 139 ------------FKR-------------FGTKCAGCGQGLAPSQVVRRAQELVYHLTCFS 173
Query: 125 CVVCGKQLVPGDEFALRED-GLFCKDDHE 152
C +C +QL GDEF L ED L CK D+E
Sbjct: 174 CALCSRQLDTGDEFYLMEDRKLVCKPDYE 202
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 5/105 (4%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCF-VRDGKTYCKR 59
KR + C GCG + ++R A +L +H C CA C + LD + + D K CK
Sbjct: 140 KRFGTKCAGCGQGLAPSQVVRRAQELVYHLTCFSCALCSRQLDTGDEFYLMEDRKLVCKP 199
Query: 60 DYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNF 104
DY ++ + D DG KR + + E L +
Sbjct: 200 DYEQAKAKELADGGSI----DGDQPNKRPRTTITAKQLETLKLAY 240
>gi|124013499|gb|ABM87992.1| LHX6 [Macaca nemestrina]
Length = 198
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 72/149 (48%), Gaps = 29/149 (19%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C CG I D+Y+L+V +L WH CL C+ C L +
Sbjct: 69 ICSSCGLXILDRYLLKVN-NLIWHVRCLECSVCRTSLRQ--------------------- 106
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
+N +C++++ + CK DY FGTKC +C D+V RA+ YH+ CF C
Sbjct: 107 ------QN-SCYIKNKEIXCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC 159
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGM 154
C +QL G+EF L E+ + C+ ++ M
Sbjct: 160 FSCKRQLSTGEEFGLVEEKVLCRIHYDTM 188
>gi|410921390|ref|XP_003974166.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Takifugu
rubripes]
Length = 354
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 63/143 (44%), Gaps = 31/143 (21%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
++C GC I D+++LRV D WH AC+RCA C L ++C
Sbjct: 5 AVCAGCQRPIRDRFLLRVT-DCLWHEACVRCAACGDALKKSC------------------ 45
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
FVR K YCK+DY LF C C + VMRA ++H+ CF
Sbjct: 46 ------------FVRGRKLYCKQDYAELFAVHCGGCAEAISHTELVMRAGAAVFHLHCFT 93
Query: 125 CVVCGKQLVPGDEFALREDGLFC 147
C VC +L GD RE L C
Sbjct: 94 CSVCSCRLQTGDRCVFREGQLLC 116
>gi|340721611|ref|XP_003399211.1| PREDICTED: LIM/homeobox protein Awh-like [Bombus terrestris]
gi|350404711|ref|XP_003487194.1| PREDICTED: LIM/homeobox protein Awh-like [Bombus impatiens]
Length = 334
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 81/170 (47%), Gaps = 33/170 (19%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCG ++ ++ +L V WH+ CLRC C
Sbjct: 44 CGGCGERVRERTVLCVG-GRTWHSRCLRCCAC---------------------------- 74
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
+ L + +CF++ + YC+ DY FG KC KC + D+V RA+ ++YH+ CF C
Sbjct: 75 ARPLHDQHSCFLKGMRLYCRHDYALTFGAKCAKCGRSVGAGDWVRRARERVYHLACFACD 134
Query: 127 VCGKQLVPGDEFALREDGLFCK----DDHEGMDKSSNGENNNNNTNINNN 172
C +QL G++FAL + L CK D EG + SS+ ++ + + + N
Sbjct: 135 ACSRQLSTGEQFALLDARLLCKAHYLDVVEGNNTSSDEGGDSESGHKSGN 184
>gi|322787267|gb|EFZ13403.1| hypothetical protein SINV_03010 [Solenopsis invicta]
Length = 334
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 75/157 (47%), Gaps = 33/157 (21%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCG + ++ +L V WH+ CL+C C
Sbjct: 59 CGGCGESVRERTVLCVG-GRTWHSRCLKCCAC---------------------------- 89
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
+ L + +CF+R + YC+ DY FG KC KC + D+V RAK+++YH+ CF C
Sbjct: 90 ARPLHDQHSCFLRGMRLYCRHDYALTFGAKCAKCGRSVGAGDWVRRAKDRVYHLACFACD 149
Query: 127 VCGKQLVPGDEFALREDGLFCK----DDHEGMDKSSN 159
C +QL G++FAL + L CK D EG + SS+
Sbjct: 150 ACSRQLSTGEQFALLDARLLCKAHYLDVVEGNNTSSS 186
>gi|189503044|gb|ACE06903.1| unknown [Schistosoma japonicum]
gi|226469222|emb|CAX70090.1| LIM domain transcription factor LMO4 [Schistosoma japonicum]
gi|226469224|emb|CAX70091.1| LIM domain transcription factor LMO4 [Schistosoma japonicum]
gi|226469226|emb|CAX70092.1| LIM domain transcription factor LMO4 [Schistosoma japonicum]
Length = 291
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 69/148 (46%), Gaps = 32/148 (21%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCGG I ++ +L A D WH CL C+ C LDE
Sbjct: 5 CAGCGGPIVEKTLLN-AIDRFWHTTCLNCSCCGLRLDE---------------------- 41
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFC 124
+ FVR C++DY++LFG C KC + ++ VMR ++K+YHV CFC
Sbjct: 42 -----LGPSVFVRSNMLLCRQDYLKLFGLSGTCAKCRVQIPPDELVMRCQDKVYHVNCFC 96
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C C L PGD+ + LFC +HE
Sbjct: 97 CTHCHSPLHPGDKVCFMDGNLFC--EHE 122
>gi|358335730|dbj|GAA54362.1| LIM domain transcription factor LMO4-B [Clonorchis sinensis]
Length = 303
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 79/179 (44%), Gaps = 30/179 (16%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C GCG I ++ +L A D WH CL C+ C LDE
Sbjct: 4 VCAGCGDPIVERTLLN-ALDRFWHTGCLNCSCCGLRLDE--------------------- 41
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCF 123
+ FVR C++DY+RLFG C KC ++ VMR + +YHV+CF
Sbjct: 42 ------LGPSVFVRSDMLLCRQDYLRLFGLSGTCAKCRQKIPPDELVMRCQESVYHVRCF 95
Query: 124 CCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNNTNINNNLHNLNNEGSN 182
CC C QL PGD+ L E LFC+ + + ++ + + N + NL +N
Sbjct: 96 CCFHCHAQLNPGDKVCLVEGNLFCELEFPQLFSTTTVKWSPTMKPPNQAISNLLMTSTN 154
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.324 0.140 0.463
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,291,986,016
Number of Sequences: 23463169
Number of extensions: 141708805
Number of successful extensions: 1523530
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7432
Number of HSP's successfully gapped in prelim test: 3251
Number of HSP's that attempted gapping in prelim test: 1135587
Number of HSP's gapped (non-prelim): 273930
length of query: 191
length of database: 8,064,228,071
effective HSP length: 134
effective length of query: 57
effective length of database: 9,215,130,721
effective search space: 525262451097
effective search space used: 525262451097
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 72 (32.3 bits)