Query psy4072
Match_columns 191
No_of_seqs 201 out of 1316
Neff 8.8
Searched_HMMs 29240
Date Sat Aug 17 00:38:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4072.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4072hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xjy_A Rhombotin-2; oncoprotei 100.0 6.2E-32 2.1E-36 194.2 6.7 126 4-158 2-130 (131)
2 2xqn_T Testin, TESS; metal-bin 100.0 7.1E-31 2.4E-35 187.5 8.4 122 3-155 2-125 (126)
3 2rgt_A Fusion of LIM/homeobox 100.0 1.8E-30 6E-35 194.4 7.2 158 2-190 4-166 (169)
4 1rut_X Flinc4, fusion protein 100.0 3.9E-30 1.3E-34 195.6 8.6 128 3-160 4-135 (188)
5 2jtn_A LIM domain-binding prot 100.0 4.3E-29 1.5E-33 188.9 7.4 122 3-155 59-181 (182)
6 1b8t_A Protein (CRP1); LIM dom 100.0 2.1E-28 7.3E-33 186.6 8.7 153 3-161 6-180 (192)
7 2cup_A Skeletal muscle LIM-pro 99.9 2.3E-26 7.9E-31 157.9 6.2 98 2-129 3-101 (101)
8 1m3v_A FLIN4, fusion of the LI 99.9 7.4E-23 2.5E-27 145.1 4.6 114 2-160 3-119 (122)
9 1j2o_A FLIN2, fusion of rhombo 99.8 2.6E-21 8.9E-26 135.5 5.9 108 3-160 2-111 (114)
10 2ehe_A Four and A half LIM dom 99.8 7.8E-21 2.7E-25 125.4 1.7 79 80-159 1-79 (82)
11 1x63_A Skeletal muscle LIM-pro 99.8 1.4E-20 4.9E-25 124.1 2.7 80 80-160 1-80 (82)
12 2cuq_A Four and A half LIM dom 99.8 7.8E-20 2.7E-24 120.0 2.1 78 80-160 1-78 (80)
13 2egq_A FHL1 protein; LIM domai 99.8 1.5E-19 5.1E-24 117.7 2.4 74 80-154 1-77 (77)
14 1x3h_A Leupaxin; paxillin fami 99.7 1.9E-19 6.4E-24 118.1 1.7 78 80-160 1-78 (80)
15 1x6a_A LIMK-2, LIM domain kina 99.7 2E-19 6.8E-24 118.3 0.7 77 81-159 2-79 (81)
16 2dlo_A Thyroid receptor-intera 99.7 3.3E-19 1.1E-23 117.3 1.5 76 80-159 2-78 (81)
17 1v6g_A Actin binding LIM prote 99.7 6.1E-18 2.1E-22 111.1 3.6 77 81-159 2-78 (81)
18 1iml_A CRIP, cysteine rich int 99.7 1.6E-17 5.6E-22 107.8 4.3 71 5-105 1-72 (76)
19 1a7i_A QCRP2 (LIM1); LIM domai 99.7 2.6E-17 8.8E-22 108.1 3.4 72 3-104 6-77 (81)
20 1x68_A FHL5 protein; four-and- 99.7 4.7E-17 1.6E-21 105.6 3.4 70 2-101 3-75 (76)
21 1x4k_A Skeletal muscle LIM-pro 99.6 1.1E-16 3.8E-21 102.7 4.4 68 2-98 3-70 (72)
22 2cur_A Skeletal muscle LIM-pro 99.6 1.1E-16 3.7E-21 101.9 4.2 67 2-99 3-69 (69)
23 1wyh_A SLIM 2, skeletal muscle 99.6 1.5E-16 5E-21 102.1 4.8 67 2-98 3-70 (72)
24 2d8z_A Four and A half LIM dom 99.6 1.4E-16 4.8E-21 101.6 4.4 67 2-99 3-69 (70)
25 2dj7_A Actin-binding LIM prote 99.6 1.3E-16 4.6E-21 104.5 4.4 66 3-99 14-79 (80)
26 1x68_A FHL5 protein; four-and- 99.6 1.9E-16 6.6E-21 102.7 4.6 72 91-163 2-75 (76)
27 2dar_A PDZ and LIM domain prot 99.6 2.2E-16 7.4E-21 105.8 4.1 66 2-98 23-88 (90)
28 2cu8_A Cysteine-rich protein 2 99.6 2.6E-16 8.9E-21 102.0 3.9 66 3-98 8-74 (76)
29 1x4k_A Skeletal muscle LIM-pro 99.6 2E-16 6.7E-21 101.5 2.9 68 92-160 3-70 (72)
30 1g47_A Pinch protein; LIM doma 99.6 2.2E-16 7.6E-21 102.5 2.9 68 2-98 9-76 (77)
31 1x4l_A Skeletal muscle LIM-pro 99.6 3.6E-16 1.2E-20 100.3 3.4 58 2-61 3-63 (72)
32 1nyp_A Pinch protein; LIM doma 99.6 5.7E-16 2E-20 97.7 4.1 56 2-60 3-58 (66)
33 2ehe_A Four and A half LIM dom 99.6 5.8E-16 2E-20 101.8 4.1 66 3-98 14-80 (82)
34 1x3h_A Leupaxin; paxillin fami 99.6 6E-16 2.1E-20 101.2 4.0 66 3-99 14-79 (80)
35 1wyh_A SLIM 2, skeletal muscle 99.6 3.2E-16 1.1E-20 100.4 2.3 68 92-160 3-70 (72)
36 2cuq_A Four and A half LIM dom 99.6 1E-15 3.4E-20 100.2 4.7 66 2-98 13-78 (80)
37 1x4l_A Skeletal muscle LIM-pro 99.6 4.5E-16 1.6E-20 99.8 2.8 66 93-159 4-71 (72)
38 1nyp_A Pinch protein; LIM doma 99.6 3.5E-16 1.2E-20 98.6 1.5 64 92-158 3-66 (66)
39 1wig_A KIAA1808 protein; LIM d 99.6 7.5E-16 2.6E-20 99.1 2.8 66 92-159 3-68 (73)
40 1x61_A Thyroid receptor intera 99.6 2E-15 7E-20 96.7 4.8 63 2-93 3-65 (72)
41 1x63_A Skeletal muscle LIM-pro 99.6 2E-15 6.9E-20 99.2 4.8 67 2-97 13-79 (82)
42 3f6q_B LIM and senescent cell 99.6 6.4E-16 2.2E-20 98.9 2.1 66 90-156 7-72 (72)
43 2d8x_A Protein pinch; LIM doma 99.6 2E-15 7E-20 96.2 4.3 46 2-50 3-48 (70)
44 1x64_A Alpha-actinin-2 associa 99.6 1.9E-15 6.5E-20 100.9 4.3 64 3-97 24-87 (89)
45 2dlo_A Thyroid receptor-intera 99.6 1.6E-15 5.3E-20 99.5 3.8 66 3-99 14-80 (81)
46 2dar_A PDZ and LIM domain prot 99.6 1.1E-15 3.6E-20 102.4 3.0 74 84-160 15-88 (90)
47 1x62_A C-terminal LIM domain p 99.6 8.1E-16 2.8E-20 100.5 1.8 64 3-97 14-77 (79)
48 1wig_A KIAA1808 protein; LIM d 99.5 6.3E-15 2.2E-19 94.8 5.5 62 2-65 3-64 (73)
49 2cor_A Pinch protein; LIM doma 99.5 3.4E-15 1.2E-19 97.5 4.2 56 2-61 13-68 (79)
50 1x61_A Thyroid receptor intera 99.5 1.2E-15 4E-20 97.9 1.7 66 93-159 4-69 (72)
51 2d8y_A Eplin protein; LIM doma 99.5 2.5E-15 8.4E-20 100.8 3.3 66 3-98 14-79 (91)
52 2d8z_A Four and A half LIM dom 99.5 2E-15 6.7E-20 96.3 2.6 66 92-160 3-68 (70)
53 1g47_A Pinch protein; LIM doma 99.5 9.4E-16 3.2E-20 99.5 1.0 66 93-159 10-75 (77)
54 2d8x_A Protein pinch; LIM doma 99.5 2.4E-15 8.4E-20 95.8 2.6 65 94-161 5-69 (70)
55 2iyb_E Testin, TESS, TES; LIM 99.5 2.8E-15 9.7E-20 94.2 2.8 61 93-154 1-64 (65)
56 3f6q_B LIM and senescent cell 99.5 7.2E-15 2.5E-19 93.9 4.3 58 3-61 10-67 (72)
57 2cu8_A Cysteine-rich protein 2 99.5 5.4E-15 1.9E-19 95.7 3.6 66 92-159 7-73 (76)
58 1b8t_A Protein (CRP1); LIM dom 99.5 4.6E-15 1.6E-19 112.6 3.9 72 4-105 115-186 (192)
59 2l3k_A Rhombotin-2, linker, LI 99.5 1.6E-15 5.4E-20 107.3 1.0 72 89-160 1-74 (123)
60 2cur_A Skeletal muscle LIM-pro 99.5 1.6E-15 5.6E-20 96.4 0.8 65 92-159 3-67 (69)
61 2dj7_A Actin-binding LIM prote 99.5 9.8E-15 3.4E-19 95.5 3.7 63 95-160 16-78 (80)
62 2egq_A FHL1 protein; LIM domai 99.5 1.1E-14 3.9E-19 94.4 3.8 59 2-62 13-75 (77)
63 2co8_A NEDD9 interacting prote 99.5 1.3E-14 4.3E-19 95.4 3.9 61 2-64 13-75 (82)
64 2l3k_A Rhombotin-2, linker, LI 99.5 4E-14 1.4E-18 100.0 6.7 75 6-108 10-84 (123)
65 1x6a_A LIMK-2, LIM domain kina 99.5 2.3E-14 7.9E-19 93.8 4.7 67 3-98 14-80 (81)
66 2l4z_A DNA endonuclease RBBP8, 99.5 1.3E-14 4.5E-19 102.5 3.4 57 4-61 61-118 (123)
67 2cor_A Pinch protein; LIM doma 99.5 7.6E-15 2.6E-19 95.8 1.9 64 93-160 14-77 (79)
68 1x64_A Alpha-actinin-2 associa 99.5 1.4E-14 4.8E-19 96.6 3.0 64 94-160 25-88 (89)
69 2iyb_E Testin, TESS, TES; LIM 99.5 1.9E-14 6.5E-19 90.4 3.2 58 4-63 2-63 (65)
70 1a7i_A QCRP2 (LIM1); LIM domai 99.5 1.3E-14 4.5E-19 95.0 2.4 65 94-160 7-71 (81)
71 1x62_A C-terminal LIM domain p 99.5 4E-15 1.4E-19 97.1 -0.4 64 94-160 15-78 (79)
72 1iml_A CRIP, cysteine rich int 99.5 2.2E-14 7.6E-19 92.8 3.1 65 95-161 1-66 (76)
73 2d8y_A Eplin protein; LIM doma 99.5 4.2E-14 1.4E-18 94.7 4.3 66 93-160 14-79 (91)
74 2cup_A Skeletal muscle LIM-pro 99.5 2.4E-14 8.1E-19 97.6 3.0 68 93-161 4-71 (101)
75 2l4z_A DNA endonuclease RBBP8, 99.4 3.9E-14 1.3E-18 100.1 2.2 64 92-156 59-123 (123)
76 1j2o_A FLIN2, fusion of rhombo 99.4 7.3E-14 2.5E-18 97.4 3.3 64 95-159 4-68 (114)
77 2xqn_T Testin, TESS; metal-bin 99.4 6.6E-14 2.2E-18 99.2 2.6 66 93-160 2-67 (126)
78 2co8_A NEDD9 interacting prote 99.4 7.8E-14 2.7E-18 91.6 2.7 62 95-158 16-79 (82)
79 1m3v_A FLIN4, fusion of the LI 99.3 9.1E-14 3.1E-18 98.1 0.2 64 93-157 4-68 (122)
80 1v6g_A Actin binding LIM prote 99.3 2.8E-12 9.7E-17 83.8 4.3 58 3-63 14-72 (81)
81 1rut_X Flinc4, fusion protein 99.3 4E-12 1.4E-16 96.0 4.8 69 6-102 71-139 (188)
82 2jtn_A LIM domain-binding prot 99.3 2E-12 6.9E-17 97.2 3.1 77 81-160 44-123 (182)
83 2xjy_A Rhombotin-2; oncoprotei 99.2 6.2E-12 2.1E-16 89.5 5.3 45 6-50 68-112 (131)
84 2rgt_A Fusion of LIM/homeobox 99.2 3.1E-11 1E-15 89.7 5.5 90 4-124 65-156 (169)
85 1zfo_A LAsp-1; LIM domain, zin 97.9 3.3E-06 1.1E-10 44.5 1.6 29 4-33 3-31 (31)
86 1zfo_A LAsp-1; LIM domain, zin 97.6 7.7E-06 2.6E-10 43.0 -0.6 28 95-123 4-31 (31)
87 4ap4_A E3 ubiquitin ligase RNF 81.0 1.3 4.3E-05 30.0 3.2 104 3-107 6-126 (133)
88 2ysm_A Myeloid/lymphoid or mix 77.5 3.5 0.00012 27.4 4.4 58 80-154 46-105 (111)
89 1jjd_A Metallothionein, SMTA; 74.9 1.5 5.2E-05 25.6 1.7 29 34-63 9-38 (55)
90 2ecm_A Ring finger and CHY zin 71.7 3 0.0001 23.4 2.6 41 3-43 4-54 (55)
91 1t1h_A Gspef-atpub14, armadill 63.2 8.6 0.00029 23.2 3.6 47 31-107 7-56 (78)
92 2jrp_A Putative cytoplasmic pr 62.7 7.3 0.00025 24.6 3.1 31 96-134 33-63 (81)
93 2ct0_A Non-SMC element 1 homol 59.3 4.9 0.00017 24.8 1.9 42 3-45 14-65 (74)
94 2gvi_A Conserved hypothetical 58.8 2.6 9E-05 31.4 0.7 29 33-62 173-201 (204)
95 4gne_A Histone-lysine N-methyl 57.5 27 0.00092 23.1 5.4 19 79-104 50-68 (107)
96 2eqg_A Tumor necrosis factor, 55.5 2.8 9.7E-05 23.1 0.3 18 76-93 22-39 (49)
97 1d4u_A Nucleotide excision rep 54.9 17 0.00057 24.4 4.0 12 179-190 74-85 (111)
98 2ecy_A TNF receptor-associated 53.2 6.1 0.00021 23.1 1.6 29 79-107 32-63 (66)
99 2kwj_A Zinc finger protein DPF 52.3 4.2 0.00014 27.2 0.8 57 79-152 49-107 (114)
100 1iym_A EL5; ring-H2 finger, ub 52.0 8.5 0.00029 21.4 2.0 30 4-33 5-36 (55)
101 2xeu_A Ring finger protein 4; 50.9 5.5 0.00019 22.9 1.1 43 3-45 2-57 (64)
102 1x4j_A Ring finger protein 38; 50.0 10 0.00034 22.8 2.2 40 5-44 24-72 (75)
103 2djb_A Polycomb group ring fin 49.7 15 0.00053 21.7 3.1 28 80-107 34-63 (72)
104 2ect_A Ring finger protein 126 49.2 16 0.00054 22.0 3.1 42 4-45 15-65 (78)
105 2ea6_A Ring finger protein 4; 48.5 5.2 0.00018 23.4 0.7 39 5-43 16-67 (69)
106 2vpb_A Hpygo1, pygopus homolog 48.1 7.1 0.00024 23.4 1.2 27 96-122 10-39 (65)
107 2ecw_A Tripartite motif-contai 47.3 22 0.00075 21.4 3.6 14 32-45 19-32 (85)
108 3ng2_A RNF4, snurf, ring finge 47.0 5.9 0.0002 23.4 0.8 42 4-45 10-64 (71)
109 2kiz_A E3 ubiquitin-protein li 47.0 12 0.00041 21.9 2.2 42 4-45 14-64 (69)
110 2das_A Zinc finger MYM-type pr 46.8 13 0.00043 22.0 2.1 28 123-150 21-51 (62)
111 2ysl_A Tripartite motif-contai 46.7 12 0.00039 22.2 2.1 26 81-106 39-69 (73)
112 2e6s_A E3 ubiquitin-protein li 46.1 11 0.00036 23.4 1.9 29 96-124 28-57 (77)
113 1chc_A Equine herpes virus-1 r 45.8 11 0.00036 22.1 1.8 42 3-45 4-53 (68)
114 1v9x_A Poly (ADP-ribose) polym 43.6 7.5 0.00026 26.2 0.9 29 96-124 22-60 (114)
115 2ecl_A Ring-box protein 2; RNF 43.0 11 0.00039 23.1 1.7 42 4-45 15-77 (81)
116 2ecv_A Tripartite motif-contai 41.6 20 0.00069 21.6 2.7 26 81-106 38-71 (85)
117 1jm7_B BARD1, BRCA1-associated 41.4 15 0.00052 24.2 2.2 26 81-106 42-67 (117)
118 2gvi_A Conserved hypothetical 40.2 5.1 0.00018 29.8 -0.4 31 122-153 172-202 (204)
119 2yur_A Retinoblastoma-binding 39.8 28 0.00097 20.7 3.2 26 81-106 35-64 (74)
120 2d8t_A Dactylidin, ring finger 39.0 12 0.00042 22.1 1.4 25 6-32 17-41 (71)
121 3hcs_A TNF receptor-associated 38.8 17 0.0006 25.6 2.4 30 32-63 18-47 (170)
122 2puy_A PHD finger protein 21A; 37.9 36 0.0012 19.5 3.3 28 4-33 5-32 (60)
123 3vk6_A E3 ubiquitin-protein li 37.3 23 0.00078 23.3 2.4 28 81-108 21-51 (101)
124 3asl_A E3 ubiquitin-protein li 37.1 13 0.00043 22.6 1.1 28 96-124 20-49 (70)
125 2dmj_A Poly (ADP-ribose) polym 36.4 6 0.00021 26.2 -0.5 30 95-124 26-65 (106)
126 2yql_A PHD finger protein 21A; 36.4 34 0.0012 19.4 3.0 28 4-33 9-36 (56)
127 2ko5_A Ring finger protein Z; 36.3 5.3 0.00018 26.0 -0.7 10 124-133 63-72 (99)
128 2ep4_A Ring finger protein 24; 35.9 19 0.00063 21.4 1.8 40 5-44 16-64 (74)
129 2d8s_A Cellular modulator of i 35.8 25 0.00087 21.7 2.5 42 4-45 15-71 (80)
130 3ztg_A E3 ubiquitin-protein li 35.3 21 0.00072 22.2 2.1 24 81-104 33-60 (92)
131 2csy_A Zinc finger protein 183 35.1 17 0.00058 22.1 1.6 36 6-43 17-60 (81)
132 1rmd_A RAG1; V(D)J recombinati 34.8 22 0.00076 23.2 2.2 29 79-107 40-71 (116)
133 2lo3_A SAGA-associated factor 34.5 8.1 0.00028 21.1 -0.1 15 5-19 18-32 (44)
134 4ayc_A E3 ubiquitin-protein li 34.4 14 0.00047 25.3 1.1 37 6-44 55-99 (138)
135 1xwh_A Autoimmune regulator; P 34.2 45 0.0015 19.6 3.4 28 4-33 8-35 (66)
136 1g25_A CDK-activating kinase a 33.8 25 0.00087 20.2 2.2 29 80-108 26-57 (65)
137 2l0b_A E3 ubiquitin-protein li 33.3 20 0.00068 22.5 1.7 28 6-33 42-70 (91)
138 1mm2_A MI2-beta; PHD, zinc fin 33.2 61 0.0021 18.7 3.8 28 4-33 9-36 (61)
139 2cs3_A Protein C14ORF4, MY039 33.1 14 0.00049 23.2 0.9 30 6-36 17-46 (93)
140 1uw0_A DNA ligase III; DNA rep 32.9 14 0.00046 24.9 0.9 29 96-124 17-57 (117)
141 3od8_A Poly [ADP-ribose] polym 32.9 7.4 0.00025 26.3 -0.5 31 95-125 39-79 (116)
142 2d8v_A Zinc finger FYVE domain 32.3 14 0.00046 22.3 0.7 12 52-63 26-37 (67)
143 2y43_A E3 ubiquitin-protein li 31.6 24 0.00083 22.3 1.9 27 80-106 41-69 (99)
144 1jm7_A BRCA1, breast cancer ty 31.2 22 0.00075 22.9 1.7 38 6-45 23-71 (112)
145 2kre_A Ubiquitin conjugation f 31.0 45 0.0015 21.4 3.2 16 30-45 27-42 (100)
146 3fl2_A E3 ubiquitin-protein li 30.9 17 0.00058 24.2 1.1 37 6-44 54-99 (124)
147 3lrq_A E3 ubiquitin-protein li 30.8 28 0.00096 22.2 2.1 26 81-106 42-70 (100)
148 2jne_A Hypothetical protein YF 30.7 6.1 0.00021 25.8 -1.1 31 95-133 62-92 (101)
149 2ecn_A Ring finger protein 141 29.6 12 0.00041 22.0 0.1 38 5-45 16-61 (70)
150 1bor_A Transcription factor PM 29.1 61 0.0021 18.0 3.2 39 4-44 6-49 (56)
151 2ct2_A Tripartite motif protei 29.0 37 0.0013 20.6 2.4 11 6-16 17-27 (88)
152 2ckl_A Polycomb group ring fin 28.3 33 0.0011 22.1 2.2 27 80-106 34-62 (108)
153 3l11_A E3 ubiquitin-protein li 27.9 21 0.00072 23.3 1.2 29 32-62 15-43 (115)
154 3dpl_R Ring-box protein 1; ubi 27.5 28 0.00094 22.8 1.7 39 4-42 37-99 (106)
155 4ayb_P DNA-directed RNA polyme 27.5 69 0.0023 17.8 3.0 12 123-134 4-15 (48)
156 2kr4_A Ubiquitin conjugation f 27.4 45 0.0015 20.6 2.6 48 30-107 12-61 (85)
157 2c2l_A CHIP, carboxy terminus 27.3 47 0.0016 25.0 3.3 48 30-107 206-256 (281)
158 1wgm_A Ubiquitin conjugation f 26.3 54 0.0018 20.9 2.9 16 30-45 20-35 (98)
159 2xb1_A Pygopus homolog 2, B-ce 26.3 35 0.0012 22.3 2.0 51 96-154 5-62 (105)
160 3knv_A TNF receptor-associated 26.1 20 0.00067 24.8 0.8 14 32-45 31-44 (141)
161 2ckl_B Ubiquitin ligase protei 25.0 35 0.0012 23.8 2.0 26 81-106 74-102 (165)
162 1z6u_A NP95-like ring finger p 24.6 27 0.00091 24.3 1.2 25 6-32 80-104 (150)
163 3hct_A TNF receptor-associated 22.6 28 0.00096 22.9 1.0 29 33-63 19-47 (118)
164 2l5u_A Chromodomain-helicase-D 22.4 46 0.0016 19.3 1.8 9 80-88 47-55 (61)
165 2egp_A Tripartite motif-contai 22.3 36 0.0012 20.2 1.4 11 6-16 14-24 (79)
166 1weo_A Cellulose synthase, cat 22.1 51 0.0017 21.1 2.0 24 81-104 42-68 (93)
167 1twf_L ABC10-alpha, DNA-direct 21.5 51 0.0017 20.0 1.9 32 123-159 29-61 (70)
168 2jny_A Uncharacterized BCR; st 21.2 90 0.0031 18.6 3.0 24 33-60 11-34 (67)
169 4av1_A Poly [ADP-ribose] polym 21.2 20 0.00069 27.0 0.0 14 95-108 144-157 (223)
170 1znf_A 31ST zinc finger from X 20.5 41 0.0014 14.4 1.1 13 33-45 2-14 (27)
171 4gat_A Nitrogen regulatory pro 20.5 89 0.0031 18.6 2.8 36 124-160 11-48 (66)
No 1
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.97 E-value=6.2e-32 Score=194.20 Aligned_cols=126 Identities=37% Similarity=0.814 Sum_probs=112.2
Q ss_pred CCcccccccccccceeEeecCCCcccccCccccccccccCC-CceEEeeCCeecccchhhcccccceeccccceeeeCCe
Q psy4072 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDE-NCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGK 82 (191)
Q Consensus 4 ~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~-~~~~~~~~g~~yc~~c~~~~~~~~~~~~~c~~~~~~~~ 82 (191)
.++|++|+++|.+++++ .++|+.||++||+|..|+++|.. ...| ++++|+
T Consensus 2 ~~~C~~C~~~I~~~~~~-~a~~~~wH~~CF~C~~C~~~L~~~~~~~----------------------------~~~~g~ 52 (131)
T 2xjy_A 2 LLTCGGCQQNIGDRYFL-KAIDQYWHEDCLSCDLCGCRLGEVGRRL----------------------------YYKLGR 52 (131)
T ss_dssp CCBBTTTCCBCCSSEEE-EETTEEEETTTCBCTTTCCBCSSTTCCE----------------------------EEETTE
T ss_pred cccCcCCCCEeCCcEEE-EECCCcccHHHcccCcCCCccccCCCeE----------------------------EEECCE
Confidence 57899999999998766 48999999999999999999974 2134 459999
Q ss_pred ecchhhhhhhhhh--hhhhcCCCccCCCeEEEecCccccccccccccCCCCCCCCCceeeeCCccCCccccccccCCC
Q psy4072 83 TYCKRDYVRLFGT--KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSS 158 (191)
Q Consensus 83 ~~C~~c~~~~~~~--~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~ 158 (191)
|||+.||.+++++ +|.+|+++|.+.|.++.+.++.||++||+|..|+++|..+..|+..++++||..||.++++++
T Consensus 53 ~yC~~~y~~~~~~~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~C~~c~~~~~~~~ 130 (131)
T 2xjy_A 53 KLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKIN 130 (131)
T ss_dssp EECHHHHHHHHCCCEECTTTCCEECTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGHHHHHHHH
T ss_pred EeecCchhhhCCCccChhhcCCccCccceeEeeCCceECccCcccCCCCCCCCCCCEEEEECCEEEcHHHHHHHhhcc
Confidence 9999999999998 999999999987788999999999999999999999965778999999999999999887653
No 2
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.97 E-value=7.1e-31 Score=187.49 Aligned_cols=122 Identities=25% Similarity=0.538 Sum_probs=110.2
Q ss_pred CCCcccccccccccceeEeecCCCcccccCccccccccccCCCceEEeeCCeecccchhhcccccceeccccceeeeCCe
Q psy4072 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGK 82 (191)
Q Consensus 3 ~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~g~~yc~~c~~~~~~~~~~~~~c~~~~~~~~ 82 (191)
..++|++|+++|.+++++ .++|+.||++||+|..|+++|.+. .| ++++|+
T Consensus 2 ~~~~C~~C~~~I~~~~~~-~a~~~~~H~~CF~C~~C~~~L~~~-~f----------------------------~~~~g~ 51 (126)
T 2xqn_T 2 EKPRCAGCDELIFSNEYT-QAENQNWHLKHFCCFDCDSILAGE-IY----------------------------VMVNDK 51 (126)
T ss_dssp CCCBBTTTSSBCCSSCEE-EETTEEECGGGSBCTTTCCBCTTS-EE----------------------------EEETTE
T ss_pred cCCCCccCCCEeCCceEE-eeCCCCccCCCCCcCCCCCCCCcC-EE----------------------------EeECCE
Confidence 468999999999977666 488999999999999999999987 44 459999
Q ss_pred ecchhhhhhhhhhhhhhcCCCccCCCeEEEecCcccc--ccccccccCCCCCCCCCceeeeCCccCCcccccccc
Q psy4072 83 TYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYH--VQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMD 155 (191)
Q Consensus 83 ~~C~~c~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H--~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~ 155 (191)
+||+.||.++++++|.+|+++|.+++.++.++++.|| ++||+|..|+++|. +..|++.++++||..++.++|
T Consensus 52 ~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~~~CF~C~~C~~~l~-~~~f~~~~~~~yC~~~~~~~f 125 (126)
T 2xqn_T 52 PVCKPCYVKNHAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLI-GQKFMPVEGMVFCSVECKKRM 125 (126)
T ss_dssp EEEHHHHHHHSCCBCTTTCSBCCTTSCEEEETTEEEESSTTTSBCTTTCCBCT-TSEEEEETTEEESSHHHHHSC
T ss_pred EechHHhCcCcCccCcccCCcCCcCceEEECCCCEeeCCCCCcCcCCCCCccC-CCeeEeECCEEcchHHhhhhc
Confidence 9999999999999999999999987778999999999 99999999999998 788999999999998877765
No 3
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.96 E-value=1.8e-30 Score=194.37 Aligned_cols=158 Identities=37% Similarity=0.796 Sum_probs=120.3
Q ss_pred CCCCcccccccccccceeEeecCCCcccccCccccccccccCCCceEEeeCCeecccchhhcccccceeccccceeeeCC
Q psy4072 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDG 81 (191)
Q Consensus 2 ~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~g~~yc~~c~~~~~~~~~~~~~c~~~~~~~ 81 (191)
.+.+.|++|+++|.+.+++ .++|+.||++||+|..|+++|.+. . | +++|
T Consensus 4 ~~~~~C~~C~~~I~~~~~~-~a~~~~wH~~CF~C~~C~~~L~~~-~-f----------------------------~~~g 52 (169)
T 2rgt_A 4 PEIPMCAGCDQHILDRFIL-KALDRHWHSKCLKCSDCHVPLAER-C-F----------------------------SRGE 52 (169)
T ss_dssp ---CBBSSSSSBCCSSSCE-ECSSCEECTTTSBCTTTCCBCCSC-C-E----------------------------ESSS
T ss_pred CCCCccccCCCccCCcEEE-EECCcEEccccCccCCCCCcCCCC-C-c----------------------------ccCC
Confidence 3568999999999998766 388999999999999999999986 2 3 3889
Q ss_pred eecchhhhhhhhhhhhhhcCCCccCCCeEEEecCccccccccccccCCCCCCCCCceee-eCCccCCccccccccCCCCC
Q psy4072 82 KTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFAL-REDGLFCKDDHEGMDKSSNG 160 (191)
Q Consensus 82 ~~~C~~c~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~-~~~~~~C~~c~~~~~~~~~~ 160 (191)
++||+.||.++|+++|.+|+++|.+.+.++.+.++.||++||+|..|+++|..+..|+. .++++||..||.++++....
T Consensus 53 ~~yC~~~y~~~f~~~C~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~~~~~~ 132 (169)
T 2rgt_A 53 SVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQGGSG 132 (169)
T ss_dssp CEECHHHHHHHHSCBCTTTCCBCCTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHHHCC--
T ss_pred eeeecccccccccccccccccccCCCcEEEEcCCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHhhccCC
Confidence 99999999999999999999999987778889999999999999999999986777765 47889999999888765421
Q ss_pred ---CCCCCCCCCCCCCccC-CCCCCCCcceeeee
Q psy4072 161 ---ENNNNNTNINNNLHNL-NNEGSNSGKIQLYL 190 (191)
Q Consensus 161 ---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 190 (191)
.....++..+.+.+.+ +.+..++.-.|-|+
T Consensus 133 ~~~~~rprt~~~~~q~~~l~~~f~~~~~~~~~~~ 166 (169)
T 2rgt_A 133 GSGGSGGGTPMVAASPERHDGGLQANPVEVQSYQ 166 (169)
T ss_dssp --------EEEECCCCEECCSSCCCCCCCCCC--
T ss_pred CCCCcCCCCcccHHHHHHHHHHHhCCCCcccccC
Confidence 1122222334444444 34455555555553
No 4
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.96 E-value=3.9e-30 Score=195.59 Aligned_cols=128 Identities=37% Similarity=0.923 Sum_probs=112.3
Q ss_pred CCCcccccccccccceeEeecCCCcccccCccccccccccCC--CceEEeeCCeecccchhhcccccceeccccceeeeC
Q psy4072 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDE--NCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRD 80 (191)
Q Consensus 3 ~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~--~~~~~~~~g~~yc~~c~~~~~~~~~~~~~c~~~~~~ 80 (191)
..++|++|+++|.+.+++ .++|+.||++||+|..|+++|.. . .|+ +++
T Consensus 4 ~~~~C~~C~~~I~~~~~~-~a~~~~wH~~CF~C~~C~~~L~~~g~-~~~----------------------------~~~ 53 (188)
T 1rut_X 4 SWKRCAGCGGKIADRFLL-YAMDSYWHSRCLKCSSCQAQLGDIGT-SSY----------------------------TKS 53 (188)
T ss_dssp CCCBBTTTCCBCCCSEEE-EETTEEECGGGCBCTTTCCBHHHHCS-EEE----------------------------EET
T ss_pred CCCcCccCCCEeCCceeE-EecCcEecccCcccCCCCcccccCCc-eEE----------------------------EeC
Confidence 568999999999998766 48899999999999999999985 4 344 499
Q ss_pred Ceecchhhhhhhhhh--hhhhcCCCccCCCeEEEecCccccccccccccCCCCCCCCCceeeeCCccCCccccccccCCC
Q psy4072 81 GKTYCKRDYVRLFGT--KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSS 158 (191)
Q Consensus 81 ~~~~C~~c~~~~~~~--~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~ 158 (191)
+++||+.||.+++++ +|.+|+++|.+.|.++.+.++.||++||+|..|+++|..+..|+..++++||..||.++++++
T Consensus 54 g~~yC~~cy~~~~~~~~~C~~C~~~I~~~e~~i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~c~~~~~~~~ 133 (188)
T 1rut_X 54 GMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTALING 133 (188)
T ss_dssp TEEECHHHHHHHHSCCEECTTTCCEECTTSEEEEETTEEECGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGCCTTTC--
T ss_pred CccccccccccccccCCccccCCCccccCcEEEEcCCCEEeCCCCeECCCCCCCCCCCeEEEECCeEECHHHHHHHhccc
Confidence 999999999999998 799999999987788899999999999999999999975778999999999999999998887
Q ss_pred CC
Q psy4072 159 NG 160 (191)
Q Consensus 159 ~~ 160 (191)
.-
T Consensus 134 ~~ 135 (188)
T 1rut_X 134 HL 135 (188)
T ss_dssp --
T ss_pred cc
Confidence 53
No 5
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.95 E-value=4.3e-29 Score=188.94 Aligned_cols=122 Identities=44% Similarity=0.980 Sum_probs=107.6
Q ss_pred CCCcccccccccccceeEeecCCCcccccCccccccccccCCCceEEeeCCeecccchhhcccccceeccccceeeeCCe
Q psy4072 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGK 82 (191)
Q Consensus 3 ~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~g~~yc~~c~~~~~~~~~~~~~c~~~~~~~~ 82 (191)
..+.|++|+++|.+.+++ .++|+.||+.||+|..|+++|.+. . | .++|+
T Consensus 59 ~~~~C~~C~~~I~~~~~~-~a~~~~wH~~CF~C~~C~~~L~~~-~-f----------------------------~~~g~ 107 (182)
T 2jtn_A 59 EIPMCAGCDQHILDRFIL-KALDRHWHSKCLKCSDCHVPLAER-C-F----------------------------SRGES 107 (182)
T ss_dssp SCCBCBTSSSBCCCSEEE-EETTEEECSSTTSCTTTCCCCSSC-C-E----------------------------EETTE
T ss_pred CCCcCccCCCCccCceeE-EecCCeEccccCccCCCCCccCCC-c-e----------------------------eECCE
Confidence 468999999999998766 488999999999999999999986 2 3 38999
Q ss_pred ecchhhhhhhhhhhhhhcCCCccCCCeEEEecCccccccccccccCCCCCCCCCceee-eCCccCCcccccccc
Q psy4072 83 TYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFAL-REDGLFCKDDHEGMD 155 (191)
Q Consensus 83 ~~C~~c~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~-~~~~~~C~~c~~~~~ 155 (191)
+||+.||.++|+++|.+|+++|.+.+.++.+.++.||++||+|..|+++|..+..|+. .++++||..||.++.
T Consensus 108 ~yC~~~y~~~f~~kC~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy~~~~ 181 (182)
T 2jtn_A 108 VYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAK 181 (182)
T ss_dssp EECHHHHHHTTSCCCTTTCCCCCSSCCCCEETTEECCTTTCCCTTTCCCCCTTCEEEECTTSCEECHHHHHHHT
T ss_pred eeecCccccccccccccCCCccCCCceEEecCCCCEEeCCCcCCCCCCCCCCCCceEEccCCEEECHHHHHHhh
Confidence 9999999999999999999999987767789999999999999999999986667765 478899999997654
No 6
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.95 E-value=2.1e-28 Score=186.57 Aligned_cols=153 Identities=18% Similarity=0.322 Sum_probs=115.7
Q ss_pred CCCcccccccccccceeEeecCCCcccccCccccccccccCCCceEEeeCCeecccchhhcccccceec----------c
Q psy4072 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLD----------E 72 (191)
Q Consensus 3 ~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~g~~yc~~c~~~~~~~~~~~----------~ 72 (191)
+.++|.+|+++|...+.+ .++|+.||+.||+|..|+++|.+. .|+..+|++||+.||...+.++-.. +
T Consensus 6 ~~~~C~~C~~~I~~~~~v-~a~g~~wH~~CF~C~~C~~~L~~~-~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~~~~ 83 (192)
T 1b8t_A 6 GGKKCGVCQKAVYFAEEV-QCEGSSFHKSCFLCMVCKKNLDST-TVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTD 83 (192)
T ss_dssp CCEECTTTCCEECSSCCE-EETTEEECTTTCBCTTTCCBCCSS-SEEEETTEEEEHHHHHHHHSCCCCCCCCCCCCCCCC
T ss_pred CCCcCccCCCeecceeEE-EeCCceecCCCCcCcccCCcCCCC-eeEecCCEeeChhhhHhhcCccccccccccccEecC
Confidence 457899999999866666 489999999999999999999998 7899999999999998766543100 0
Q ss_pred c-cce-----eeeCCeecchhhhhhhh------hhhhhhcCCCccCCCeEEEecCccccccccccccCCCCCCCCCceee
Q psy4072 73 N-CTC-----FVRDGKTYCKRDYVRLF------GTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFAL 140 (191)
Q Consensus 73 ~-c~~-----~~~~~~~~C~~c~~~~~------~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~ 140 (191)
+ ..+ ......| .....+.+ +++|.+|+++|.+++. +.+.++.||++||+|..|+++|. +..|+.
T Consensus 84 ~~~~~~~~~~~~~~~~p--~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~-v~a~~~~~H~~CF~C~~C~~~L~-~~~~~~ 159 (192)
T 1b8t_A 84 KGESLGIKYEEGQSHRP--TNPNASRMAQKVGGSDGCPRCGQAVYAAEK-VIGAGKSWHKSCFRCAKCGKSLE-STTLAD 159 (192)
T ss_dssp CCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCEECTTTSCEECSSSC-EEETTEEECTTTCBCTTTCCBCC-SSSEEE
T ss_pred CCcccccccccccccCC--CCcCccccccccCCCCcCCCCCCEecCcEE-EecCCCccchhcCCccccCCCCC-CCcccc
Confidence 0 000 0000111 01111111 2479999999987664 56899999999999999999998 457999
Q ss_pred eCCccCCccccccccCCCCCC
Q psy4072 141 REDGLFCKDDHEGMDKSSNGE 161 (191)
Q Consensus 141 ~~~~~~C~~c~~~~~~~~~~~ 161 (191)
.++++||..||.++|+++...
T Consensus 160 ~~g~~yC~~cy~~~f~~kc~~ 180 (192)
T 1b8t_A 160 KDGEIYCKGCYAKNFGPKGFG 180 (192)
T ss_dssp ETTEEEEHHHHHHHTCCCCCC
T ss_pred cCCEEeCHHHHHHhcCCcCCC
Confidence 999999999999999999754
No 7
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.93 E-value=2.3e-26 Score=157.87 Aligned_cols=98 Identities=28% Similarity=0.511 Sum_probs=86.9
Q ss_pred CCCCccccccccccc-ceeEeecCCCcccccCccccccccccCCCceEEeeCCeecccchhhcccccceeccccceeeeC
Q psy4072 2 RRLSLCVGCGGQIHD-QYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRD 80 (191)
Q Consensus 2 ~~~~~C~~C~~~I~~-~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~g~~yc~~c~~~~~~~~~~~~~c~~~~~~ 80 (191)
...++|++|+++|.. ..++ .++|+.||+.||+|..|+++|.+. . |++++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~-~a~~~~~H~~CF~C~~C~~~L~~~-~----------------------------~~~~~ 52 (101)
T 2cup_A 3 SGSSGCVECRKPIGADSKEV-HYKNRFWHDTCFRCAKCLHPLANE-T----------------------------FVAKD 52 (101)
T ss_dssp SCCCBCSSSCCBCCSSSCEE-EETTEEEETTTCCCSSSCCCTTSS-C----------------------------CEEET
T ss_pred CCCCcCcccCCcccCCceEE-EECccChhhcCCcccccCCCCCcC-e----------------------------eECcC
Confidence 457899999999984 5555 488999999999999999999876 3 44589
Q ss_pred CeecchhhhhhhhhhhhhhcCCCccCCCeEEEecCccccccccccccCC
Q psy4072 81 GKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCG 129 (191)
Q Consensus 81 ~~~~C~~c~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~ 129 (191)
+++||+.||.++++++|.+|+++|.++|.++.++++.||++||+|..|+
T Consensus 53 g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~ 101 (101)
T 2cup_A 53 NKILCNKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFSGPSSG 101 (101)
T ss_dssp TEEECHHHHTTCCCCBCSSSCCBCCSSSCEEESSSCEEETTTCCCTTCC
T ss_pred CEEEChhHhhhhcCCccccCCCccccCCeEEEeCCcchHHhCCCCCCCC
Confidence 9999999999999999999999999877789999999999999999985
No 8
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.87 E-value=7.4e-23 Score=145.08 Aligned_cols=114 Identities=27% Similarity=0.614 Sum_probs=93.5
Q ss_pred CCCCcccccccccccceeEeecCCCcccccCccccccccccCC-CceEEeeCCeecccchhhcccccceeccccceeeeC
Q psy4072 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDE-NCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRD 80 (191)
Q Consensus 2 ~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~-~~~~~~~~g~~yc~~c~~~~~~~~~~~~~c~~~~~~ 80 (191)
...++|++|+++|.+.+++ .++|+.||+.||+|..|+++|.. ... |++++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~-~a~~~~wH~~CF~C~~C~~~L~~~~~~----------------------------~~~~~ 53 (122)
T 1m3v_A 3 LSWKRCAGCGGKIADRFLL-YAMDSYWHSRCLKCSSCQAQLGDIGTS----------------------------SYTKS 53 (122)
T ss_dssp SCCCCBSSSSSCCCSSCCE-EETTEEECHHHHCCSSSCCCTTTSEEC----------------------------CEEET
T ss_pred CCCCCCcccCCEeCCcEEE-EECCceeHhhCCCcCCCCCcccccCCe----------------------------EEEEC
Confidence 4578999999999998755 38899999999999999999973 113 44599
Q ss_pred Ceecchhhhhhhhhh--hhhhcCCCccCCCeEEEecCccccccccccccCCCCCCCCCceeeeCCccCCccccccccCCC
Q psy4072 81 GKTYCKRDYVRLFGT--KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSS 158 (191)
Q Consensus 81 ~~~~C~~c~~~~~~~--~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~ 158 (191)
+++||+.||.++|++ +|.+|+++|.++ .+.+.++ .+|. ++.|+..+++|||..||.+++...
T Consensus 54 g~~yC~~cy~~~f~~~~~C~~C~~~I~~~--~~~~~g~-------------~~l~-g~~f~~~~~~~yC~~~~~~~~~~~ 117 (122)
T 1m3v_A 54 GMILCRNDYIRLFGNSGAGGSGGHMGSGG--DVMVVGE-------------PTLM-GGEFGDEDERLITRLENTQFDAAN 117 (122)
T ss_dssp TEEECHHHHHHHHCCCCSSSCSSCCSCCE--ESSSSSS-------------SSCC-SCTTCCTTCCCCEECTTTTTTCCS
T ss_pred CeeecHHHHHHHcCCCCccccCCCCcCch--heEEcCC-------------cCCC-CCccEecCCEeEccCcchhchhhc
Confidence 999999999999999 999999999964 3344442 2454 889999999999999998887665
Q ss_pred CC
Q psy4072 159 NG 160 (191)
Q Consensus 159 ~~ 160 (191)
+.
T Consensus 118 g~ 119 (122)
T 1m3v_A 118 GI 119 (122)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 9
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.83 E-value=2.6e-21 Score=135.49 Aligned_cols=108 Identities=31% Similarity=0.578 Sum_probs=87.7
Q ss_pred CCCcccccccccccceeEeecCCCcccccCccccccccccCC--CceEEeeCCeecccchhhcccccceeccccceeeeC
Q psy4072 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDE--NCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRD 80 (191)
Q Consensus 3 ~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~--~~~~~~~~g~~yc~~c~~~~~~~~~~~~~c~~~~~~ 80 (191)
..++|++|+++|.+.+++. ++|+.||+.||+|..|+++|.. . .| ++++
T Consensus 2 ~~~~C~~C~~~I~~~~~~~-a~~~~wH~~CF~C~~C~~~L~~~g~-~~----------------------------~~~~ 51 (114)
T 1j2o_A 2 SLLTCGGCQQNIGDRYFLK-AIDQYWHEDCLSCDLCGCRLGEVGR-RL----------------------------YYKL 51 (114)
T ss_dssp CCBCBSSSCSCBCSSEEEE-CSSSEECTTTCCCSSSCSCCCCSSS-CC----------------------------CCBT
T ss_pred cCCCCcCCCCeeCCcEEEE-ECchhHHHhcCcccccCCchhcCCC-ee----------------------------EEEC
Confidence 4689999999999987664 8999999999999999999985 3 34 4599
Q ss_pred CeecchhhhhhhhhhhhhhcCCCccCCCeEEEecCccccccccccccCCCCCCCCCceeeeCCccCCccccccccCCCCC
Q psy4072 81 GKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNG 160 (191)
Q Consensus 81 ~~~~C~~c~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~~ 160 (191)
++|||+.||.++|+++|..|.. +.++. |+.++..++.|...+++|||..|+.++.++.+.
T Consensus 52 g~~yC~~~y~~~f~~~c~~c~~-----~~~~~---------------~~~~~~~g~~f~~~~~~~~C~~~~~~~~~~~g~ 111 (114)
T 1j2o_A 52 GRKLCRRDYLRLGGSGGHMGSG-----GDVMV---------------VGEPTLMGGEFGDEDERLITRLENTQFDAANGI 111 (114)
T ss_dssp TBCCCHHHHHHHHTSCCSSCBS-----CSCCC---------------SSCSSTTSSBCCCSSSCCCEEEECTTCCCTTSS
T ss_pred CeeechHHHHHHhCcccCcCCC-----CceeE---------------cCCccCCCCeeEEcCCEeecchhhhccccccCC
Confidence 9999999999999999988862 11221 345555588999999999999999887776653
No 10
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=7.8e-21 Score=125.38 Aligned_cols=79 Identities=19% Similarity=0.423 Sum_probs=72.9
Q ss_pred CCeecchhhhhhhhhhhhhhcCCCccCCCeEEEecCccccccccccccCCCCCCCCCceeeeCCccCCccccccccCCCC
Q psy4072 80 DGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSN 159 (191)
Q Consensus 80 ~~~~~C~~c~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~ 159 (191)
+|+|||++||.++++++|.+|+++|.+++.++.++++.||++||+|+.|+++|. +..|+..+++|||..||.++++++-
T Consensus 1 ~g~~yC~~~y~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~-~~~f~~~~~~~~C~~c~~~~~~~~C 79 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLA-DEPFTCQDSELLCNDCYCSAFSSGP 79 (82)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCS-SCCEEEETTEEEETTTSSCCGGGSS
T ss_pred CCceechhHhCcccCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccC-CCccEeeCCEEECHHHHhhhcCCCC
Confidence 578999999999999999999999996667888999999999999999999998 6689999999999999999998874
No 11
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.80 E-value=1.4e-20 Score=124.09 Aligned_cols=80 Identities=20% Similarity=0.364 Sum_probs=73.8
Q ss_pred CCeecchhhhhhhhhhhhhhcCCCccCCCeEEEecCccccccccccccCCCCCCCCCceeeeCCccCCccccccccCCCC
Q psy4072 80 DGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSN 159 (191)
Q Consensus 80 ~~~~~C~~c~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~ 159 (191)
+++|||++||.++++++|.+|+++|.+.+.++.+.++.||++||+|..|+++|. +..|+..++.+||..||.++|+++.
T Consensus 1 ~~~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~~~~yC~~cy~~~f~~~~ 79 (82)
T 1x63_A 1 GSSGSSGKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIG-TGSFFPKGEDFYCVTCHETKFASGP 79 (82)
T ss_dssp CCSCCCCCCCSCCCSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCT-TSCEEEETTEEEEHHHHHHHTSCCC
T ss_pred CCCcCchhHHccccCCcCccCCcccccCceEEEECccccccccCchhhCCCccC-CCccEeeCCEEECHHHHHHHhCCCC
Confidence 367999999999999999999999998777899999999999999999999998 4589999999999999999999986
Q ss_pred C
Q psy4072 160 G 160 (191)
Q Consensus 160 ~ 160 (191)
.
T Consensus 80 ~ 80 (82)
T 1x63_A 80 S 80 (82)
T ss_dssp S
T ss_pred C
Confidence 4
No 12
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.77 E-value=7.8e-20 Score=119.96 Aligned_cols=78 Identities=18% Similarity=0.482 Sum_probs=71.3
Q ss_pred CCeecchhhhhhhhhhhhhhcCCCccCCCeEEEecCccccccccccccCCCCCCCCCceeeeCCccCCccccccccCCCC
Q psy4072 80 DGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSN 159 (191)
Q Consensus 80 ~~~~~C~~c~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~ 159 (191)
+|+|||++||.++++++|.+|+++|.+. .+.+.++.||++||+|..|+++|. +..|+..+++|||..||.++|+++.
T Consensus 1 gg~~yC~~cy~~~~~~~C~~C~~~I~~~--~v~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~~~~yC~~cy~~~f~~~c 77 (80)
T 2cuq_A 1 GSSGSSGPCYENKFAPRCARCSKTLTQG--GVTYRDQPWHRECLVCTGCQTPLA-GQQFTSRDEDPYCVACFGELFASGP 77 (80)
T ss_dssp CCCCSCCCCCCCCSSCCCTTTCCCCCSC--CEESSSSEECTTTCBCSSSCCBCT-TCCEEECSSSEEEHHHHHHHTTCST
T ss_pred CCcEEcHHHHccccCCcCCCCCCEecCc--EEEECCchhhhhhCCcccCCCcCC-CCeeEeECCEEECHHHHHHHcCCCC
Confidence 4789999999999999999999999853 678999999999999999999997 6689999999999999999999886
Q ss_pred C
Q psy4072 160 G 160 (191)
Q Consensus 160 ~ 160 (191)
.
T Consensus 78 ~ 78 (80)
T 2cuq_A 78 S 78 (80)
T ss_dssp T
T ss_pred C
Confidence 4
No 13
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1.5e-19 Score=117.74 Aligned_cols=74 Identities=19% Similarity=0.480 Sum_probs=66.8
Q ss_pred CCeecchhhhhhhhhhhhhhcCCCccC---CCeEEEecCccccccccccccCCCCCCCCCceeeeCCccCCccccccc
Q psy4072 80 DGKTYCKRDYVRLFGTKCEKCNLNFKR---EDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154 (191)
Q Consensus 80 ~~~~~C~~c~~~~~~~~C~~C~~~I~~---~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~ 154 (191)
.++|||++||.++++++|++|+++|.+ .+.++.+.++.||++||+|+.|+++|. +..|+..+++|||..||.++
T Consensus 1 g~~~yC~~cy~~~~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~-~~~f~~~~~~~yC~~cy~~l 77 (77)
T 2egq_A 1 GSSGSSGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLA-NKRFVFHQEQVYCPDCAKKL 77 (77)
T ss_dssp CCSSCCTTCCCSCCCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCT-TSCCCEETTEECCHHHHHHC
T ss_pred CCCeEchhHhchhhCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCC-CCccEeECCEEEChHHhccC
Confidence 368999999999999999999999996 446889999999999999999999998 66899999999999998653
No 14
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.75 E-value=1.9e-19 Score=118.13 Aligned_cols=78 Identities=21% Similarity=0.431 Sum_probs=70.4
Q ss_pred CCeecchhhhhhhhhhhhhhcCCCccCCCeEEEecCccccccccccccCCCCCCCCCceeeeCCccCCccccccccCCCC
Q psy4072 80 DGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSN 159 (191)
Q Consensus 80 ~~~~~C~~c~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~ 159 (191)
+|++||++||.++++++|.+|+++|.+ ..+.+.++.||++||+|+.|+++|. +..|+..+++|||..||.++|+++-
T Consensus 1 gg~~yC~~~y~~~~~~~C~~C~~~I~~--~~v~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~~~~yC~~~y~~~f~~~C 77 (80)
T 1x3h_A 1 GSSGSSGKDFLAMFSPKCGGCNRPVLE--NYLSAMDTVWHPECFVCGDCFTSFS-TGSFFELDGRPFCELHYHHRRGSGP 77 (80)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCS--SCEEETTEEECTTTCBCSSSCCBSC-SSCCEESSSCEECHHHHHHHHSSSC
T ss_pred CCCccchhHHhhhcCCccccCCCeecc--eeEEECCCeEecCcCChhhCCCCCC-CCcEEeECCEEECHHHHHHHcCCCC
Confidence 468999999999999999999999995 3678999999999999999999998 4478899999999999999999875
Q ss_pred C
Q psy4072 160 G 160 (191)
Q Consensus 160 ~ 160 (191)
.
T Consensus 78 ~ 78 (80)
T 1x3h_A 78 S 78 (80)
T ss_dssp C
T ss_pred C
Confidence 3
No 15
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.74 E-value=2e-19 Score=118.31 Aligned_cols=77 Identities=27% Similarity=0.580 Sum_probs=69.5
Q ss_pred CeecchhhhhhhhhhhhhhcCCCccCCCeEEEecCccccccccccccCCCCCCCCCcee-eeCCccCCccccccccCCCC
Q psy4072 81 GKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFA-LREDGLFCKDDHEGMDKSSN 159 (191)
Q Consensus 81 ~~~~C~~c~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~-~~~~~~~C~~c~~~~~~~~~ 159 (191)
++|||+.||.++++++|.+|+++|. +.++.+.++.||++||+|..|+++|..+..|. ..+++|||..||.++|++..
T Consensus 2 ~~~yC~~~y~~~~~~~C~~C~~~I~--~~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~~~ 79 (81)
T 1x6a_A 2 SSGSSGKDYWGKFGEFCHGCSLLMT--GPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSGPS 79 (81)
T ss_dssp CCCCCCCCSSCCSSCBCTTTCCBCC--SCCBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCTTS
T ss_pred CCccchhHHhhhcCCcCccCCCCcC--ceEEEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhcCCC
Confidence 5799999999999999999999999 45788999999999999999999997567787 47889999999999998764
No 16
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.74 E-value=3.3e-19 Score=117.25 Aligned_cols=76 Identities=30% Similarity=0.537 Sum_probs=68.1
Q ss_pred CCeecchhhhhhhhhhhhhhcCCCccCCCeEEEecCccccccccccccCCCCCCCCCceeee-CCccCCccccccccCCC
Q psy4072 80 DGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALR-EDGLFCKDDHEGMDKSS 158 (191)
Q Consensus 80 ~~~~~C~~c~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~-~~~~~C~~c~~~~~~~~ 158 (191)
+|+|||++||. +++++|.+|+++|. +.++.+.++.||++||+|+.|+++|. +..|... +++|||..||.++|+++
T Consensus 2 ~g~~yC~~~y~-~~~~~C~~C~~~I~--~~~~~a~~~~~H~~CF~C~~C~~~L~-~~~f~~~~~g~~yC~~cy~~~f~~~ 77 (81)
T 2dlo_A 2 SSGSSGEGCYV-ATLEKCATCSQPIL--DRILRAMGKAYHPGCFTCVVCHRGLD-GIPFTVDATSQIHCIEDFHRKFASG 77 (81)
T ss_dssp CCCCCCCCCCC-SSCCBCTTTCCBCC--SCCEEETTEEECTTTCBCSSSCCBCT-TSCEECCTTCCCEEHHHHHHHTTSS
T ss_pred cCCEECHHHhh-cCCCccccCCCeec--ceeEEECCccccHHhcCcccCCCccC-CCeeEECCCCEEECHHHHHHHhcCc
Confidence 57899999998 78899999999999 45788999999999999999999998 6677776 68999999999999987
Q ss_pred C
Q psy4072 159 N 159 (191)
Q Consensus 159 ~ 159 (191)
-
T Consensus 78 C 78 (81)
T 2dlo_A 78 P 78 (81)
T ss_dssp S
T ss_pred C
Confidence 4
No 17
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.70 E-value=6.1e-18 Score=111.14 Aligned_cols=77 Identities=30% Similarity=0.593 Sum_probs=65.7
Q ss_pred CeecchhhhhhhhhhhhhhcCCCccCCCeEEEecCccccccccccccCCCCCCCCCceeeeCCccCCccccccccCCCC
Q psy4072 81 GKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSN 159 (191)
Q Consensus 81 ~~~~C~~c~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~ 159 (191)
+.+||+.||.++++++|++|+++|.+ .++.+.++.||++||+|..|+++|..+..+...++.+||..||.+++.+.+
T Consensus 2 ~~~yC~~dy~~~~~~~C~~C~~~I~~--~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~~~~~ 78 (81)
T 1v6g_A 2 SSGSSGLDYQRLYGTRCFSCDQFIEG--EVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSVSGP 78 (81)
T ss_dssp CCCCCCSCGGGSCCCBCTTTCCBCCS--CCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCSSCCC
T ss_pred CCCcchHHHHhHhCCcCccccCEecc--ceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhcccCCCCC
Confidence 46899999999999999999999993 478899999999999999999999855555555555899999988777654
No 18
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=1.6e-17 Score=107.78 Aligned_cols=71 Identities=24% Similarity=0.505 Sum_probs=61.6
Q ss_pred CcccccccccccceeEeecCCCcccccCccccccccccCCCceEEeeCCeecccchhhcccccceeccccceeeeCCeec
Q psy4072 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTY 84 (191)
Q Consensus 5 ~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~g~~yc~~c~~~~~~~~~~~~~c~~~~~~~~~~ 84 (191)
|+|++|+++|...+.+ .++|+.||+.||+|..|+++|.+. .| +++++++|
T Consensus 1 p~C~~C~~~I~~~~~v-~a~~~~~H~~CF~C~~C~~~L~~~-~~----------------------------~~~~g~~y 50 (76)
T 1iml_A 1 PKCPKCDKEVYFAERV-TSLGKDWHRPCLKCEKCGKTLTSG-GH----------------------------AEHEGKPY 50 (76)
T ss_dssp CBCTTTSSBCCGGGEE-EETTEEEETTTCBCTTTCCBCCTT-TE----------------------------EEETTEEE
T ss_pred CcCCCCCCEEECceEE-EECCccccCCCCCccccCccCCCC-ce----------------------------ECcCCeEe
Confidence 6899999999965665 478999999999999999999987 34 44899999
Q ss_pred ch-hhhhhhhhhhhhhcCCCcc
Q psy4072 85 CK-RDYVRLFGTKCEKCNLNFK 105 (191)
Q Consensus 85 C~-~c~~~~~~~~C~~C~~~I~ 105 (191)
|+ .||.++++++|.+|++.+.
T Consensus 51 C~~~cy~~~f~~~C~~C~~~~~ 72 (76)
T 1iml_A 51 CNHPCYSAMFGPKGFGRGGAES 72 (76)
T ss_dssp ETTTHHHHHSSCCCSSCCCSSS
T ss_pred eCHHHHHHHhCccCCCcCCcee
Confidence 99 6999999999999997654
No 19
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.66 E-value=2.6e-17 Score=108.12 Aligned_cols=72 Identities=24% Similarity=0.477 Sum_probs=53.2
Q ss_pred CCCcccccccccccceeEeecCCCcccccCccccccccccCCCceEEeeCCeecccchhhcccccceeccccceeeeCCe
Q psy4072 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGK 82 (191)
Q Consensus 3 ~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~g~~yc~~c~~~~~~~~~~~~~c~~~~~~~~ 82 (191)
..+.|.+|+++|.+.+.+ .++|+.||++||+|..|+++|... .| +.++++
T Consensus 6 ~~~~C~~C~~~I~~~~~~-~a~~~~~H~~CF~C~~C~~~L~~~-~~----------------------------~~~~~~ 55 (81)
T 1a7i_A 6 GGNKCGACGRTVYHAEEV-QCDGRSFHRCCFLCMVCRKNLDST-TV----------------------------AIHDAE 55 (81)
T ss_dssp --CBCSSSCCBCSSTTEE-EETTEEEESSSEECSSSCCEECSS-CC----------------------------EEETTE
T ss_pred CCCcCcCcCccccCceeE-EeCCcccccccCccCCCCCCCCCC-Ce----------------------------EeeCCE
Confidence 568899999999866665 488999999999999999999887 34 448999
Q ss_pred ecchhhhhhhhhhhhhhcCCCc
Q psy4072 83 TYCKRDYVRLFGTKCEKCNLNF 104 (191)
Q Consensus 83 ~~C~~c~~~~~~~~C~~C~~~I 104 (191)
+||+.||.++|+++|.+|++..
T Consensus 56 ~yC~~cy~~~f~~~c~gcg~g~ 77 (81)
T 1a7i_A 56 VYCKSCYGKKYGPKGYGYGQGA 77 (81)
T ss_dssp EECSHHHHHHCC----------
T ss_pred EECHHHHHHHhCCcccccCCcc
Confidence 9999999999999999998754
No 20
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=4.7e-17 Score=105.62 Aligned_cols=70 Identities=19% Similarity=0.448 Sum_probs=57.2
Q ss_pred CCCCccccccccccc---ceeEeecCCCcccccCccccccccccCCCceEEeeCCeecccchhhcccccceeccccceee
Q psy4072 2 RRLSLCVGCGGQIHD---QYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFV 78 (191)
Q Consensus 2 ~~~~~C~~C~~~I~~---~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~g~~yc~~c~~~~~~~~~~~~~c~~~~ 78 (191)
...++|++|+++|.+ ..++ .++|+.||++||+|..|+++|.+. .|+ .
T Consensus 3 ~~~~~C~~C~~~I~~~g~~~~~-~a~~~~wH~~CF~C~~C~~~L~~~-~f~----------------------------~ 52 (76)
T 1x68_A 3 SGSSGCVACSKPISGLTGAKFI-CFQDSQWHSECFNCGKCSVSLVGK-GFL----------------------------T 52 (76)
T ss_dssp TCCCCCTTTCCCCCTTTTCCEE-EETTEEEEGGGCBCTTTCCBCSSS-CEE----------------------------E
T ss_pred ccCCCCccCCCcccCCCCceeE-EECCcccCcccCChhhCCCcCCCC-ceE----------------------------e
Confidence 467899999999996 3344 488999999999999999999976 444 4
Q ss_pred eCCeecchhhhhhhhhhhhhhcC
Q psy4072 79 RDGKTYCKRDYVRLFGTKCEKCN 101 (191)
Q Consensus 79 ~~~~~~C~~c~~~~~~~~C~~C~ 101 (191)
+++++||+.||.++++++|+.+.
T Consensus 53 ~~g~~yC~~cy~~~f~~~C~~~s 75 (76)
T 1x68_A 53 QNKEIFCQKCGSGMDTDISGPSS 75 (76)
T ss_dssp ETTEEEETTTTCCCCCCSSSSSC
T ss_pred ECCEEECHHHhhhhhCCcCCCCC
Confidence 78888888888888888887653
No 21
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=1.1e-16 Score=102.66 Aligned_cols=68 Identities=19% Similarity=0.408 Sum_probs=56.7
Q ss_pred CCCCcccccccccccceeEeecCCCcccccCccccccccccCCCceEEeeCCeecccchhhcccccceeccccceeeeCC
Q psy4072 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDG 81 (191)
Q Consensus 2 ~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~g~~yc~~c~~~~~~~~~~~~~c~~~~~~~ 81 (191)
...++|++|+++|.+.+.++.++|+.||+.||+|..|+++|.+. .|+ ++++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~-~~~----------------------------~~~~ 53 (72)
T 1x4k_A 3 SGSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTK-SFI----------------------------PKDN 53 (72)
T ss_dssp SCCCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSS-SEE----------------------------EETT
T ss_pred ccCCCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCC-ccC----------------------------ccCC
Confidence 45689999999999764333588999999999999999999987 444 4888
Q ss_pred eecchhhhhhhhhhhhh
Q psy4072 82 KTYCKRDYVRLFGTKCE 98 (191)
Q Consensus 82 ~~~C~~c~~~~~~~~C~ 98 (191)
++||+.||.++++++|+
T Consensus 54 ~~yC~~cy~~~f~~~C~ 70 (72)
T 1x4k_A 54 QNFCVPCYEKQHASGPS 70 (72)
T ss_dssp EEEEHHHHHHHTSSCCC
T ss_pred eEECHHHHhHHhCCCCC
Confidence 88888888888888875
No 22
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=1.1e-16 Score=101.92 Aligned_cols=67 Identities=25% Similarity=0.491 Sum_probs=56.8
Q ss_pred CCCCcccccccccccceeEeecCCCcccccCccccccccccCCCceEEeeCCeecccchhhcccccceeccccceeeeCC
Q psy4072 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDG 81 (191)
Q Consensus 2 ~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~g~~yc~~c~~~~~~~~~~~~~c~~~~~~~ 81 (191)
...+.|++|+++|.+..+ .++|+.||++||+|..|+++|.+. .| +++++
T Consensus 3 ~~~~~C~~C~~~I~~~~~--~a~~~~~H~~CF~C~~C~~~L~~~-~~----------------------------~~~~~ 51 (69)
T 2cur_A 3 SGSSGCVKCNKAITSGGI--TYQDQPWHADCFVCVTCSKKLAGQ-RF----------------------------TAVED 51 (69)
T ss_dssp CCCCCCSSSCCCCCTTCE--EETTEEECTTTTBCTTTCCBCTTS-CE----------------------------EECSS
T ss_pred CCcCCCcccCCEeCcceE--EECccccccCcCEECCCCCCCCCC-cc----------------------------EeECC
Confidence 356899999999998654 378999999999999999999876 34 44888
Q ss_pred eecchhhhhhhhhhhhhh
Q psy4072 82 KTYCKRDYVRLFGTKCEK 99 (191)
Q Consensus 82 ~~~C~~c~~~~~~~~C~~ 99 (191)
++||+.||.++++++|.+
T Consensus 52 ~~yC~~cy~~~f~~~C~g 69 (69)
T 2cur_A 52 QYYCVDCYKNFVSGPSSG 69 (69)
T ss_dssp CEEEHHHHHHHHTCSCCC
T ss_pred EEECHHHhHHHhcCCCCC
Confidence 899999999999888853
No 23
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=1.5e-16 Score=102.07 Aligned_cols=67 Identities=25% Similarity=0.505 Sum_probs=56.6
Q ss_pred CCCCcccccccccccc-eeEeecCCCcccccCccccccccccCCCceEEeeCCeecccchhhcccccceeccccceeeeC
Q psy4072 2 RRLSLCVGCGGQIHDQ-YILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRD 80 (191)
Q Consensus 2 ~~~~~C~~C~~~I~~~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~g~~yc~~c~~~~~~~~~~~~~c~~~~~~ 80 (191)
...++|.+|+++|.+. .++ .++|+.||+.||+|..|+++|.+. .|+ .++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~-~a~~~~~H~~CF~C~~C~~~L~~~-~~~----------------------------~~~ 52 (72)
T 1wyh_A 3 SGSSGCSACGETVMPGSRKL-EYGGQTWHEHCFLCSGCEQPLGSR-SFV----------------------------PDK 52 (72)
T ss_dssp CCCCBCSSSCCBCCSSSCEE-CSTTCCEETTTCBCTTTCCBTTTS-CEE----------------------------EET
T ss_pred ccCCCCccCCCccccCccEE-EECccccCcccCeECCCCCcCCCC-ccC----------------------------CcC
Confidence 4578999999999974 444 589999999999999999999987 444 488
Q ss_pred Ceecchhhhhhhhhhhhh
Q psy4072 81 GKTYCKRDYVRLFGTKCE 98 (191)
Q Consensus 81 ~~~~C~~c~~~~~~~~C~ 98 (191)
+++||+.||.++++++|+
T Consensus 53 ~~~yC~~cy~~~f~~~C~ 70 (72)
T 1wyh_A 53 GAHYCVPCYENKFASGPS 70 (72)
T ss_dssp TEEEEHHHHHHHTSCCCC
T ss_pred CeEECHHHHHHHccCcCC
Confidence 888888888888888875
No 24
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=1.4e-16 Score=101.63 Aligned_cols=67 Identities=24% Similarity=0.526 Sum_probs=56.5
Q ss_pred CCCCcccccccccccceeEeecCCCcccccCccccccccccCCCceEEeeCCeecccchhhcccccceeccccceeeeCC
Q psy4072 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDG 81 (191)
Q Consensus 2 ~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~g~~yc~~c~~~~~~~~~~~~~c~~~~~~~ 81 (191)
...++|++|+++|.+..+ .++++.||++||+|..|+++|.+. .|+ ++++
T Consensus 3 ~~~~~C~~C~~~I~~~~~--~a~~~~~H~~CF~C~~C~~~L~~~-~~~----------------------------~~~~ 51 (70)
T 2d8z_A 3 SGSSGCVQCKKPITTGGV--TYREQPWHKECFVCTACRKQLSGQ-RFT----------------------------ARDD 51 (70)
T ss_dssp CCCCBCSSSCCBCCSSEE--ESSSSEEETTTSBCSSSCCBCTTS-CCE----------------------------ESSS
T ss_pred CCCCCCcccCCeeccceE--EECccccCCCCCccCCCCCcCCcC-ceE----------------------------eeCC
Confidence 356899999999998764 488999999999999999999877 344 4888
Q ss_pred eecchhhhhhhhhhhhhh
Q psy4072 82 KTYCKRDYVRLFGTKCEK 99 (191)
Q Consensus 82 ~~~C~~c~~~~~~~~C~~ 99 (191)
++||+.||.++++++|++
T Consensus 52 ~~yC~~cy~~~f~~~c~~ 69 (70)
T 2d8z_A 52 FAYCLNCFCDLYASGPSS 69 (70)
T ss_dssp SEECHHHHHHHTCCCCTT
T ss_pred eEECHHHHHHHhccccCC
Confidence 888888988888888753
No 25
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=1.3e-16 Score=104.49 Aligned_cols=66 Identities=33% Similarity=0.771 Sum_probs=55.4
Q ss_pred CCCcccccccccccceeEeecCCCcccccCccccccccccCCCceEEeeCCeecccchhhcccccceeccccceeeeCCe
Q psy4072 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGK 82 (191)
Q Consensus 3 ~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~g~~yc~~c~~~~~~~~~~~~~c~~~~~~~~ 82 (191)
+.+.|.+|+++|.+.+++ .++++.||++||+|..|+++|.+. |+. ++++
T Consensus 14 ~~~~C~~C~~~I~~~~~v-~a~~~~wH~~CF~C~~C~~~L~~~--~~~----------------------------~~g~ 62 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSL-LALDKQWHVSCFKCQTCSVILTGE--YIS----------------------------KDGV 62 (80)
T ss_dssp SCSCCTTTCCCCSSSCCE-EETTEEECTTTCBCSSSCCBCSSC--CEE----------------------------ETTE
T ss_pred CCCCCcCcCCeeCCCeEE-EECCcccccccCCcCcCCCCcCCC--eEE----------------------------ECCE
Confidence 567899999999976666 488999999999999999999853 554 8888
Q ss_pred ecchhhhhhhhhhhhhh
Q psy4072 83 TYCKRDYVRLFGTKCEK 99 (191)
Q Consensus 83 ~~C~~c~~~~~~~~C~~ 99 (191)
+||+.||.++|+++|.+
T Consensus 63 ~yC~~~y~~~fg~~C~~ 79 (80)
T 2dj7_A 63 PYCESDYHAQFGSGPSS 79 (80)
T ss_dssp EECTTHHHHHTTCCSTT
T ss_pred EECHHHHHHHcCCCCCC
Confidence 88888888888888753
No 26
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=1.9e-16 Score=102.67 Aligned_cols=72 Identities=24% Similarity=0.530 Sum_probs=63.4
Q ss_pred hhhhhhhhhcCCCccC--CCeEEEecCccccccccccccCCCCCCCCCceeeeCCccCCccccccccCCCCCCCC
Q psy4072 91 RLFGTKCEKCNLNFKR--EDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENN 163 (191)
Q Consensus 91 ~~~~~~C~~C~~~I~~--~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~~~~~ 163 (191)
++++++|.+|+++|.+ .+.++.+.++.||++||+|+.|+++|. +..|+..+++|||..||.++|+++-..++
T Consensus 2 ~~~~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~-~~~f~~~~g~~yC~~cy~~~f~~~C~~~s 75 (76)
T 1x68_A 2 SSGSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLV-GKGFLTQNKEIFCQKCGSGMDTDISGPSS 75 (76)
T ss_dssp TTCCCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCS-SSCEEEETTEEEETTTTCCCCCCSSSSSC
T ss_pred CccCCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCC-CCceEeECCEEECHHHhhhhhCCcCCCCC
Confidence 3577899999999995 446889999999999999999999998 77899999999999999999999865543
No 27
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=2.2e-16 Score=105.75 Aligned_cols=66 Identities=23% Similarity=0.586 Sum_probs=55.7
Q ss_pred CCCCcccccccccccceeEeecCCCcccccCccccccccccCCCceEEeeCCeecccchhhcccccceeccccceeeeCC
Q psy4072 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDG 81 (191)
Q Consensus 2 ~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~g~~yc~~c~~~~~~~~~~~~~c~~~~~~~ 81 (191)
...++|++|+++|.+..+. ++|+.||++||+|..|+++|.+. .|+ ++++
T Consensus 23 ~~~~~C~~C~~~I~~~~v~--a~~~~~H~~CF~C~~C~~~L~~~-~f~----------------------------~~~g 71 (90)
T 2dar_A 23 KRTPMCAHCNQVIRGPFLV--ALGKSWHPEEFNCAHCKNTMAYI-GFV----------------------------EEKG 71 (90)
T ss_dssp TCCCBBSSSCCBCCSCEEE--ETTEEECTTTCBCSSSCCBCSSS-CBE----------------------------ESSS
T ss_pred CCCCCCccCCCEecceEEE--ECCccccccCCccCCCCCCCCCC-EeE----------------------------eECC
Confidence 3567899999999876553 88999999999999999999987 344 4888
Q ss_pred eecchhhhhhhhhhhhh
Q psy4072 82 KTYCKRDYVRLFGTKCE 98 (191)
Q Consensus 82 ~~~C~~c~~~~~~~~C~ 98 (191)
++||+.||.++|+++|+
T Consensus 72 ~~yC~~cy~~~f~~~c~ 88 (90)
T 2dar_A 72 ALYCELCYEKFFASGPS 88 (90)
T ss_dssp CEECHHHHHHHTSCCCC
T ss_pred EEECHHHHHHHcCCCCC
Confidence 88899999888888875
No 28
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=2.6e-16 Score=102.05 Aligned_cols=66 Identities=27% Similarity=0.579 Sum_probs=55.2
Q ss_pred CCCcccccccccccceeEeecCCCcccccCccccccccccCCCceEEeeCCeecccchhhcccccceeccccceeeeCCe
Q psy4072 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGK 82 (191)
Q Consensus 3 ~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~g~~yc~~c~~~~~~~~~~~~~c~~~~~~~~ 82 (191)
..+.|++|+++|.+.+.+ .++|+.||++||+|..|+++|.+. .|+ +++++
T Consensus 8 ~~~~C~~C~~~I~~~~~v-~a~~~~~H~~CF~C~~C~~~L~~~-~~~----------------------------~~~g~ 57 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKV-SSLGKDWHKFCLKCERCSKTLTPG-GHA----------------------------EHDGK 57 (76)
T ss_dssp CCCBCTTTCCBCCTTTEE-EETTEEEETTTCBCSSSCCBCCTT-SCE----------------------------EETTE
T ss_pred CCCCCcCCCCEeECCeEE-EECCeEeeCCCCCCCCCCCccCCC-ceE----------------------------eECCE
Confidence 467899999999966666 388999999999999999999987 444 47888
Q ss_pred ecch-hhhhhhhhhhhh
Q psy4072 83 TYCK-RDYVRLFGTKCE 98 (191)
Q Consensus 83 ~~C~-~c~~~~~~~~C~ 98 (191)
+||+ .||.++|+++|.
T Consensus 58 ~yC~~~cy~~~f~~kc~ 74 (76)
T 2cu8_A 58 PFCHKPCYATLFGSGPS 74 (76)
T ss_dssp EECTTTHHHHHSCSSCS
T ss_pred EecchHHHHHhcccccC
Confidence 8888 688888888775
No 29
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=2e-16 Score=101.49 Aligned_cols=68 Identities=21% Similarity=0.402 Sum_probs=61.8
Q ss_pred hhhhhhhhcCCCccCCCeEEEecCccccccccccccCCCCCCCCCceeeeCCccCCccccccccCCCCC
Q psy4072 92 LFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNG 160 (191)
Q Consensus 92 ~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~~ 160 (191)
+++++|.+|+++|.+.+.++.+.++.||++||+|..|+++|. +..|+..++.+||..||.++|+++-.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~~~~yC~~cy~~~f~~~C~ 70 (72)
T 1x4k_A 3 SGSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIG-TKSFIPKDNQNFCVPCYEKQHASGPS 70 (72)
T ss_dssp SCCCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCC-SSSEEEETTEEEEHHHHHHHTSSCCC
T ss_pred ccCCCCccCCCcccCCceEEEECcCeecccCCcccccCCccC-CCccCccCCeEECHHHHhHHhCCCCC
Confidence 567899999999998777899999999999999999999998 55899999999999999999998764
No 30
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=2.2e-16 Score=102.52 Aligned_cols=68 Identities=24% Similarity=0.510 Sum_probs=54.2
Q ss_pred CCCCcccccccccccceeEeecCCCcccccCccccccccccCCCceEEeeCCeecccchhhcccccceeccccceeeeCC
Q psy4072 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDG 81 (191)
Q Consensus 2 ~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~g~~yc~~c~~~~~~~~~~~~~c~~~~~~~ 81 (191)
...+.|++|+++|.+.+.++.++|+.||+.||+|..|+++|.+. .|+ .++|
T Consensus 9 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~-~~~----------------------------~~~g 59 (77)
T 1g47_A 9 LASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEG-LFY----------------------------EFEG 59 (77)
T ss_dssp CCCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGG-CSE----------------------------EETT
T ss_pred CCCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCC-CeE----------------------------eECC
Confidence 35678999999998644433488999999999999999999987 344 4888
Q ss_pred eecchhhhhhhhhhhhh
Q psy4072 82 KTYCKRDYVRLFGTKCE 98 (191)
Q Consensus 82 ~~~C~~c~~~~~~~~C~ 98 (191)
++||+.||.++++++|+
T Consensus 60 ~~yC~~~y~~~f~~~C~ 76 (77)
T 1g47_A 60 RKYCEHDFQMLFAPCWI 76 (77)
T ss_dssp EEECHHHHHHHCCCC--
T ss_pred eEeCHHHHHHHhhcccC
Confidence 88888888888888774
No 31
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=3.6e-16 Score=100.26 Aligned_cols=58 Identities=21% Similarity=0.474 Sum_probs=43.7
Q ss_pred CCCCccccccccccc---ceeEeecCCCcccccCccccccccccCCCceEEeeCCeecccchh
Q psy4072 2 RRLSLCVGCGGQIHD---QYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61 (191)
Q Consensus 2 ~~~~~C~~C~~~I~~---~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~g~~yc~~c~ 61 (191)
...++|++|+++|.+ ..++ .++|+.||++||+|..|+++|.+. .|+..+|++||..||
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~~-~a~~~~wH~~CF~C~~C~~~L~~~-~f~~~~g~~yC~~c~ 63 (72)
T 1x4l_A 3 SGSSGCAGCTNPISGLGGTKYI-SFEERQWHNDCFNCKKCSLSLVGR-GFLTERDDILCPDCG 63 (72)
T ss_dssp SCSCSBTTTTBCCCCSSSCSCE-ECSSCEECTTTCBCSSSCCBCTTS-CCEECSSSEECHHHH
T ss_pred CCCCCCcCCCccccCCCCcceE-EECCcccCcccCEeccCCCcCCCC-ccEeECCEEEChhHc
Confidence 467899999999996 3444 488999999999999999999977 555534433333333
No 32
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.60 E-value=5.7e-16 Score=97.66 Aligned_cols=56 Identities=23% Similarity=0.617 Sum_probs=42.7
Q ss_pred CCCCcccccccccccceeEeecCCCcccccCccccccccccCCCceEEeeCCeecccch
Q psy4072 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60 (191)
Q Consensus 2 ~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~g~~yc~~c 60 (191)
...+.|++|+++|.+. .+ .++|+.||++||+|..|+++|.+. .|+..+|++||..|
T Consensus 3 ~~~~~C~~C~~~I~~~-~~-~a~~~~~H~~CF~C~~C~~~L~~~-~~~~~~g~~yC~~~ 58 (66)
T 1nyp_A 3 MGVPICGACRRPIEGR-VV-NAMGKQWHVEHFVCAKCEKPFLGH-RHYERKGLAYCETH 58 (66)
T ss_dssp CCCCEETTTTEECCSC-EE-CCTTSBEETTTCBCTTTCCBCSSS-CCEEETTEEECHHH
T ss_pred cCCCCCcccCCEecce-EE-EECccccccCcCEECCCCCCCCCC-ceEeECCcEECHHH
Confidence 4578999999999965 44 489999999999999999999986 55553333333333
No 33
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=5.8e-16 Score=101.79 Aligned_cols=66 Identities=23% Similarity=0.506 Sum_probs=53.5
Q ss_pred CCCccccccccccc-ceeEeecCCCcccccCccccccccccCCCceEEeeCCeecccchhhcccccceeccccceeeeCC
Q psy4072 3 RLSLCVGCGGQIHD-QYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDG 81 (191)
Q Consensus 3 ~~~~C~~C~~~I~~-~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~g~~yc~~c~~~~~~~~~~~~~c~~~~~~~ 81 (191)
..++|++|+++|.+ ..++ .++|+.||+.||+|..|+++|.+. .|+. +++
T Consensus 14 ~~~~C~~C~~~I~~~~~~~-~a~~~~~H~~CF~C~~C~~~L~~~-~f~~----------------------------~~~ 63 (82)
T 2ehe_A 14 FANTCAECQQLIGHDSREL-FYEDRHFHEGCFRCCRCQRSLADE-PFTC----------------------------QDS 63 (82)
T ss_dssp CSCBCTTTCCBCCSSCCBC-CCSSCCCBTTTSBCTTTCCBCSSC-CEEE----------------------------ETT
T ss_pred cCCcCccCCCccccCcEEE-EeCCccccccCCeecCCCCccCCC-ccEe----------------------------eCC
Confidence 46789999999994 3444 478999999999999999999987 4444 777
Q ss_pred eecchhhhhhhhhhhhh
Q psy4072 82 KTYCKRDYVRLFGTKCE 98 (191)
Q Consensus 82 ~~~C~~c~~~~~~~~C~ 98 (191)
++||+.||.++++++|+
T Consensus 64 ~~~C~~c~~~~~~~~C~ 80 (82)
T 2ehe_A 64 ELLCNDCYCSAFSSGPS 80 (82)
T ss_dssp EEEETTTSSCCGGGSSC
T ss_pred EEECHHHHhhhcCCCCC
Confidence 77788888888877774
No 34
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=6e-16 Score=101.22 Aligned_cols=66 Identities=26% Similarity=0.663 Sum_probs=56.3
Q ss_pred CCCcccccccccccceeEeecCCCcccccCccccccccccCCCceEEeeCCeecccchhhcccccceeccccceeeeCCe
Q psy4072 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGK 82 (191)
Q Consensus 3 ~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~g~~yc~~c~~~~~~~~~~~~~c~~~~~~~~ 82 (191)
..+.|++|+++|.+..+ .++++.||+.||+|..|+++|.+. .++ .++++
T Consensus 14 ~~~~C~~C~~~I~~~~v--~a~~~~~H~~CF~C~~C~~~L~~~-~~~----------------------------~~~~~ 62 (80)
T 1x3h_A 14 FSPKCGGCNRPVLENYL--SAMDTVWHPECFVCGDCFTSFSTG-SFF----------------------------ELDGR 62 (80)
T ss_dssp CSCBCTTTCCBCCSSCE--EETTEEECTTTCBCSSSCCBSCSS-CCE----------------------------ESSSC
T ss_pred cCCccccCCCeecceeE--EECCCeEecCcCChhhCCCCCCCC-cEE----------------------------eECCE
Confidence 46789999999998654 388999999999999999999887 344 48888
Q ss_pred ecchhhhhhhhhhhhhh
Q psy4072 83 TYCKRDYVRLFGTKCEK 99 (191)
Q Consensus 83 ~~C~~c~~~~~~~~C~~ 99 (191)
+||+.||.++|+++|++
T Consensus 63 ~yC~~~y~~~f~~~C~~ 79 (80)
T 1x3h_A 63 PFCELHYHHRRGSGPSS 79 (80)
T ss_dssp EECHHHHHHHHSSSCCC
T ss_pred EECHHHHHHHcCCCCCC
Confidence 99999999999988853
No 35
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=3.2e-16 Score=100.44 Aligned_cols=68 Identities=18% Similarity=0.334 Sum_probs=61.3
Q ss_pred hhhhhhhhcCCCccCCCeEEEecCccccccccccccCCCCCCCCCceeeeCCccCCccccccccCCCCC
Q psy4072 92 LFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNG 160 (191)
Q Consensus 92 ~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~~ 160 (191)
+++++|.+|+++|.+.+.++.+.++.||++||+|..|+++|. +..|+..++.+||..||.++|+++..
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~~~~yC~~cy~~~f~~~C~ 70 (72)
T 1wyh_A 3 SGSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLG-SRSFVPDKGAHYCVPCYENKFASGPS 70 (72)
T ss_dssp CCCCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTT-TSCEEEETTEEEEHHHHHHHTSCCCC
T ss_pred ccCCCCccCCCccccCccEEEECccccCcccCeECCCCCcCC-CCccCCcCCeEECHHHHHHHccCcCC
Confidence 467899999999997667889999999999999999999998 55799999999999999999998764
No 36
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=1e-15 Score=100.17 Aligned_cols=66 Identities=24% Similarity=0.536 Sum_probs=55.9
Q ss_pred CCCCcccccccccccceeEeecCCCcccccCccccccccccCCCceEEeeCCeecccchhhcccccceeccccceeeeCC
Q psy4072 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDG 81 (191)
Q Consensus 2 ~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~g~~yc~~c~~~~~~~~~~~~~c~~~~~~~ 81 (191)
...++|++|+++|.+..+ .++++.||+.||+|..|+++|.+. .++ .+++
T Consensus 13 ~~~~~C~~C~~~I~~~~v--~a~~~~~H~~CF~C~~C~~~L~~~-~~~----------------------------~~~~ 61 (80)
T 2cuq_A 13 KFAPRCARCSKTLTQGGV--TYRDQPWHRECLVCTGCQTPLAGQ-QFT----------------------------SRDE 61 (80)
T ss_dssp CSSCCCTTTCCCCCSCCE--ESSSSEECTTTCBCSSSCCBCTTC-CEE----------------------------ECSS
T ss_pred ccCCcCCCCCCEecCcEE--EECCchhhhhhCCcccCCCcCCCC-eeE----------------------------eECC
Confidence 356899999999998643 489999999999999999999876 444 4888
Q ss_pred eecchhhhhhhhhhhhh
Q psy4072 82 KTYCKRDYVRLFGTKCE 98 (191)
Q Consensus 82 ~~~C~~c~~~~~~~~C~ 98 (191)
++||+.||.++++++|+
T Consensus 62 ~~yC~~cy~~~f~~~c~ 78 (80)
T 2cuq_A 62 DPYCVACFGELFASGPS 78 (80)
T ss_dssp SEEEHHHHHHHTTCSTT
T ss_pred EEECHHHHHHHcCCCCC
Confidence 88899999888888885
No 37
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=4.5e-16 Score=99.81 Aligned_cols=66 Identities=23% Similarity=0.511 Sum_probs=59.0
Q ss_pred hhhhhhhcCCCccC--CCeEEEecCccccccccccccCCCCCCCCCceeeeCCccCCccccccccCCCC
Q psy4072 93 FGTKCEKCNLNFKR--EDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSN 159 (191)
Q Consensus 93 ~~~~C~~C~~~I~~--~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~ 159 (191)
++++|.+|+++|.+ .+.++.+.++.||++||+|..|+++|. +..|+..+++|||..||.++++++.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~-~~~f~~~~g~~yC~~c~~~~~~p~~ 71 (72)
T 1x4l_A 4 GSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLV-GRGFLTERDDILCPDCGKDISGPSS 71 (72)
T ss_dssp CSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCT-TSCCEECSSSEECHHHHHTCCCSSC
T ss_pred CCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCC-CCccEeECCEEEChhHcCcccCCCC
Confidence 46799999999996 446788999999999999999999998 7789989999999999999998763
No 38
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.57 E-value=3.5e-16 Score=98.65 Aligned_cols=64 Identities=22% Similarity=0.428 Sum_probs=57.6
Q ss_pred hhhhhhhhcCCCccCCCeEEEecCccccccccccccCCCCCCCCCceeeeCCccCCccccccccCCC
Q psy4072 92 LFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSS 158 (191)
Q Consensus 92 ~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~ 158 (191)
+++++|++|+++|. +.++.+.++.||++||+|..|+++|. +..|+..++.+||..||.++|+++
T Consensus 3 ~~~~~C~~C~~~I~--~~~~~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~g~~yC~~~y~~~f~~k 66 (66)
T 1nyp_A 3 MGVPICGACRRPIE--GRVVNAMGKQWHVEHFVCAKCEKPFL-GHRHYERKGLAYCETHYNQLFGDV 66 (66)
T ss_dssp CCCCEETTTTEECC--SCEECCTTSBEETTTCBCTTTCCBCS-SSCCEEETTEEECHHHHHHHCSCC
T ss_pred cCCCCCcccCCEec--ceEEEECccccccCcCEECCCCCCCC-CCceEeECCcEECHHHHHHHhCCC
Confidence 45679999999999 34788999999999999999999998 668999999999999999999874
No 39
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.57 E-value=7.5e-16 Score=99.15 Aligned_cols=66 Identities=23% Similarity=0.500 Sum_probs=58.7
Q ss_pred hhhhhhhhcCCCccCCCeEEEecCccccccccccccCCCCCCCCCceeeeCCccCCccccccccCCCC
Q psy4072 92 LFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSN 159 (191)
Q Consensus 92 ~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~ 159 (191)
+++++|++|+++|.+ .++.++++.||++||+|..|+++|..+..|+..++++||..||.++++...
T Consensus 3 ~~~~~C~~C~~~I~~--~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~~~ 68 (73)
T 1wig_A 3 SGSSGCDSCEKYITG--RVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTEDS 68 (73)
T ss_dssp CSCCSCSSSCCCCSS--CCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSSSSC
T ss_pred cCcCCcccCCCEecC--eeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhcccc
Confidence 467899999999995 477899999999999999999999867789999999999999998887654
No 40
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.57 E-value=2e-15 Score=96.70 Aligned_cols=63 Identities=27% Similarity=0.552 Sum_probs=50.1
Q ss_pred CCCCcccccccccccceeEeecCCCcccccCccccccccccCCCceEEeeCCeecccchhhcccccceeccccceeeeCC
Q psy4072 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDG 81 (191)
Q Consensus 2 ~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~g~~yc~~c~~~~~~~~~~~~~c~~~~~~~ 81 (191)
...++|++|+++|.+.+.++.++|+.||+.||+|..|+++|.+. .|+. +++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~-~~~~----------------------------~~~ 53 (72)
T 1x61_A 3 SGSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQ-HFYA----------------------------VER 53 (72)
T ss_dssp SCCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTS-CEEE----------------------------SSS
T ss_pred CCCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcC-cCEe----------------------------eCC
Confidence 35789999999999754333589999999999999999999776 4555 677
Q ss_pred eecchhhhhhhh
Q psy4072 82 KTYCKRDYVRLF 93 (191)
Q Consensus 82 ~~~C~~c~~~~~ 93 (191)
++||+.||.+++
T Consensus 54 ~~yC~~cy~~~~ 65 (72)
T 1x61_A 54 RAYCEGCYVATL 65 (72)
T ss_dssp CEEEHHHHHHHH
T ss_pred eEECHHHHHHHH
Confidence 777777777666
No 41
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.57 E-value=2e-15 Score=99.17 Aligned_cols=67 Identities=21% Similarity=0.419 Sum_probs=53.2
Q ss_pred CCCCcccccccccccceeEeecCCCcccccCccccccccccCCCceEEeeCCeecccchhhcccccceeccccceeeeCC
Q psy4072 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDG 81 (191)
Q Consensus 2 ~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~g~~yc~~c~~~~~~~~~~~~~c~~~~~~~ 81 (191)
...++|++|+++|.+.+.++.++|+.||++||+|..|+++|... .++. +++
T Consensus 13 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~-~~~~----------------------------~~~ 63 (82)
T 1x63_A 13 EDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTG-SFFP----------------------------KGE 63 (82)
T ss_dssp CCSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTS-CEEE----------------------------ETT
T ss_pred ccCCcCccCCcccccCceEEEECccccccccCchhhCCCccCCC-ccEe----------------------------eCC
Confidence 34679999999999654333589999999999999999999987 5555 677
Q ss_pred eecchhhhhhhhhhhh
Q psy4072 82 KTYCKRDYVRLFGTKC 97 (191)
Q Consensus 82 ~~~C~~c~~~~~~~~C 97 (191)
++||+.||.+++++++
T Consensus 64 ~~yC~~cy~~~f~~~~ 79 (82)
T 1x63_A 64 DFYCVTCHETKFASGP 79 (82)
T ss_dssp EEEEHHHHHHHTSCCC
T ss_pred EEECHHHHHHHhCCCC
Confidence 7777777777776655
No 42
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.56 E-value=6.4e-16 Score=98.88 Aligned_cols=66 Identities=26% Similarity=0.567 Sum_probs=58.8
Q ss_pred hhhhhhhhhhcCCCccCCCeEEEecCccccccccccccCCCCCCCCCceeeeCCccCCccccccccC
Q psy4072 90 VRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDK 156 (191)
Q Consensus 90 ~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~ 156 (191)
...++++|.+|+++|.+.+.++.+.++.||++||+|..|+++|..+ .|+..++++||..||.++|+
T Consensus 7 ~~~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~-~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 7 QGSASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEG-LFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp CCCTTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGG-CCEEETTEEECHHHHHHHTC
T ss_pred cCcCCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCC-CeEeECCeEeCHHHHHHhhC
Confidence 3456679999999999888888899999999999999999999844 78899999999999998875
No 43
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=2e-15 Score=96.20 Aligned_cols=46 Identities=30% Similarity=0.605 Sum_probs=39.4
Q ss_pred CCCCcccccccccccceeEeecCCCcccccCccccccccccCCCceEEe
Q psy4072 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFV 50 (191)
Q Consensus 2 ~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~ 50 (191)
.+.+.|++|+++|.+..+ .++|+.||++||+|..|+++|.+. .|+.
T Consensus 3 ~~~~~C~~C~~~I~~~~~--~a~~~~~H~~CF~C~~C~~~L~~~-~f~~ 48 (70)
T 2d8x_A 3 SGSSGCHQCGEFIIGRVI--KAMNNSWHPECFRCDLCQEVLADI-GFVK 48 (70)
T ss_dssp CCSSBCSSSCCBCCSCCE--EETTEEECTTTSBCSSSCCBCSSS-CCEE
T ss_pred CCCCcCccCCCEecceEE--EECcccccccCCEeCCCCCcCCCC-ccEe
Confidence 467899999999997544 388999999999999999999998 5555
No 44
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=1.9e-15 Score=100.90 Aligned_cols=64 Identities=28% Similarity=0.580 Sum_probs=52.0
Q ss_pred CCCcccccccccccceeEeecCCCcccccCccccccccccCCCceEEeeCCeecccchhhcccccceeccccceeeeCCe
Q psy4072 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGK 82 (191)
Q Consensus 3 ~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~g~~yc~~c~~~~~~~~~~~~~c~~~~~~~~ 82 (191)
..+.|.+|+++|.+..+ .++++.||++||+|..|+++|... .|+. ++++
T Consensus 24 ~~~~C~~C~~~I~~~~~--~a~~~~~H~~CF~C~~C~~~L~~~-~~~~----------------------------~~g~ 72 (89)
T 1x64_A 24 RMPLCDKCGSGIVGAVV--KARDKYRHPECFVCADCNLNLKQK-GYFF----------------------------VEGE 72 (89)
T ss_dssp SCCBCTTTCCBCCSCCE--ESSSCEECTTTCCCSSSCCCTTTS-CCEE----------------------------ETTE
T ss_pred cCCCcccCCCEecccEE--EECCceECccCCEecCCCCCCCCC-CeEe----------------------------ECCE
Confidence 45789999999998544 388999999999999999999987 4554 6777
Q ss_pred ecchhhhhhhhhhhh
Q psy4072 83 TYCKRDYVRLFGTKC 97 (191)
Q Consensus 83 ~~C~~c~~~~~~~~C 97 (191)
+||+.||.++|++++
T Consensus 73 ~yC~~~y~~~f~p~~ 87 (89)
T 1x64_A 73 LYCETHARARTSGPS 87 (89)
T ss_dssp EECHHHHHHHSSSCC
T ss_pred EECHHHHHHHhCCCC
Confidence 777777777777665
No 45
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=1.6e-15 Score=99.53 Aligned_cols=66 Identities=30% Similarity=0.570 Sum_probs=55.2
Q ss_pred CCCcccccccccccceeEeecCCCcccccCccccccccccCCCceEEeeCCeecccchhhcccccceeccccceeee-CC
Q psy4072 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVR-DG 81 (191)
Q Consensus 3 ~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~g~~yc~~c~~~~~~~~~~~~~c~~~~~-~~ 81 (191)
..++|++|+++|.+. ++ .++++.||+.||+|..|+++|.+. .|+ .. ++
T Consensus 14 ~~~~C~~C~~~I~~~-~~-~a~~~~~H~~CF~C~~C~~~L~~~-~f~----------------------------~~~~g 62 (81)
T 2dlo_A 14 TLEKCATCSQPILDR-IL-RAMGKAYHPGCFTCVVCHRGLDGI-PFT----------------------------VDATS 62 (81)
T ss_dssp SCCBCTTTCCBCCSC-CE-EETTEEECTTTCBCSSSCCBCTTS-CEE----------------------------CCTTC
T ss_pred CCCccccCCCeecce-eE-EECCccccHHhcCcccCCCccCCC-eeE----------------------------ECCCC
Confidence 567899999999976 44 488999999999999999999876 333 24 68
Q ss_pred eecchhhhhhhhhhhhhh
Q psy4072 82 KTYCKRDYVRLFGTKCEK 99 (191)
Q Consensus 82 ~~~C~~c~~~~~~~~C~~ 99 (191)
++||+.||.++|+++|++
T Consensus 63 ~~yC~~cy~~~f~~~C~~ 80 (81)
T 2dlo_A 63 QIHCIEDFHRKFASGPSS 80 (81)
T ss_dssp CCEEHHHHHHHTTSSSCC
T ss_pred EEECHHHHHHHhcCcCCC
Confidence 899999999999998853
No 46
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=1.1e-15 Score=102.38 Aligned_cols=74 Identities=19% Similarity=0.268 Sum_probs=63.7
Q ss_pred cchhhhhhhhhhhhhhcCCCccCCCeEEEecCccccccccccccCCCCCCCCCceeeeCCccCCccccccccCCCCC
Q psy4072 84 YCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNG 160 (191)
Q Consensus 84 ~C~~c~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~~ 160 (191)
..+..+...++++|.+|+++|. +..+.+.++.||++||+|..|+++|. +..|+..++.+||..||.++|+++..
T Consensus 15 ~~~~~~~~~~~~~C~~C~~~I~--~~~v~a~~~~~H~~CF~C~~C~~~L~-~~~f~~~~g~~yC~~cy~~~f~~~c~ 88 (90)
T 2dar_A 15 RAEHIPAGKRTPMCAHCNQVIR--GPFLVALGKSWHPEEFNCAHCKNTMA-YIGFVEEKGALYCELCYEKFFASGPS 88 (90)
T ss_dssp CCEEECTTTCCCBBSSSCCBCC--SCEEEETTEEECTTTCBCSSSCCBCS-SSCBEESSSCEECHHHHHHHTSCCCC
T ss_pred hcccCCCCCCCCCCccCCCEec--ceEEEECCccccccCCccCCCCCCCC-CCEeEeECCEEECHHHHHHHcCCCCC
Confidence 3344456677789999999997 45788999999999999999999998 66788899999999999999999864
No 47
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=8.1e-16 Score=100.45 Aligned_cols=64 Identities=22% Similarity=0.559 Sum_probs=51.7
Q ss_pred CCCcccccccccccceeEeecCCCcccccCccccccccccCCCceEEeeCCeecccchhhcccccceeccccceeeeCCe
Q psy4072 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGK 82 (191)
Q Consensus 3 ~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~g~~yc~~c~~~~~~~~~~~~~c~~~~~~~~ 82 (191)
..++|++|+++|.+..+ .++++.||++||+|..|+++|.+. .|+. ++++
T Consensus 14 ~~~~C~~C~~~I~~~~~--~a~~~~~H~~CF~C~~C~~~L~~~-~~~~----------------------------~~g~ 62 (79)
T 1x62_A 14 KLPMCDKCGTGIVGVFV--KLRDRHRHPECYVCTDCGTNLKQK-GHFF----------------------------VEDQ 62 (79)
T ss_dssp CCCCCSSSCCCCCSSCE--ECSSCEECTTTTSCSSSCCCHHHH-CCEE----------------------------SSSC
T ss_pred CCCccccCCCCccCcEE--EECcceeCcCcCeeCCCCCCCCCC-CeEe----------------------------ECCE
Confidence 46789999999998643 488999999999999999999875 4444 7777
Q ss_pred ecchhhhhhhhhhhh
Q psy4072 83 TYCKRDYVRLFGTKC 97 (191)
Q Consensus 83 ~~C~~c~~~~~~~~C 97 (191)
+||+.||.++|++++
T Consensus 63 ~yC~~cy~~~~~p~g 77 (79)
T 1x62_A 63 IYCEKHARERVSGPS 77 (79)
T ss_dssp EECHHHHHHHHSSCC
T ss_pred EECHHHHHHHhCCCC
Confidence 777777777776654
No 48
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=6.3e-15 Score=94.77 Aligned_cols=62 Identities=18% Similarity=0.389 Sum_probs=49.4
Q ss_pred CCCCcccccccccccceeEeecCCCcccccCccccccccccCCCceEEeeCCeecccchhhccc
Q psy4072 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65 (191)
Q Consensus 2 ~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~g~~yc~~c~~~~~ 65 (191)
...+.|++|+++|.+..+ .++|+.||++||+|..|+++|.....|+..+|++||..||..+.
T Consensus 3 ~~~~~C~~C~~~I~~~~v--~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~ 64 (73)
T 1wig_A 3 SGSSGCDSCEKYITGRVL--EAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAAR 64 (73)
T ss_dssp CSCCSCSSSCCCCSSCCB--CCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTS
T ss_pred cCcCCcccCCCEecCeeE--EeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhh
Confidence 356899999999999654 38999999999999999999984336777677777777766543
No 49
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=3.4e-15 Score=97.49 Aligned_cols=56 Identities=21% Similarity=0.427 Sum_probs=42.3
Q ss_pred CCCCcccccccccccceeEeecCCCcccccCccccccccccCCCceEEeeCCeecccchh
Q psy4072 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61 (191)
Q Consensus 2 ~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~g~~yc~~c~ 61 (191)
...++|++|+++|.+..+ .++|+.||++||+|..|+++|.+. +|.++|++||..||
T Consensus 13 ~~~~~C~~C~~~I~~~~v--~a~~~~~H~~CF~C~~C~~~L~~~--~f~~~g~~yC~~cy 68 (79)
T 2cor_A 13 LGKYICQKCHAIIDEQPL--IFKNDPYHPDHFNCANCGKELTAD--ARELKGELYCLPCH 68 (79)
T ss_dssp CCCCBCTTTCCBCCSCCC--CCSSSCCCTTTSBCSSSCCBCCTT--CEEETTEEECHHHH
T ss_pred cCCCCCccCCCEecceEE--EECcceeCCCCCEeCCCCCccCCC--CEeECCEEeCHHHH
Confidence 356789999999996554 388999999999999999999987 34533333333333
No 50
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=1.2e-15 Score=97.86 Aligned_cols=66 Identities=24% Similarity=0.487 Sum_probs=58.7
Q ss_pred hhhhhhhcCCCccCCCeEEEecCccccccccccccCCCCCCCCCceeeeCCccCCccccccccCCCC
Q psy4072 93 FGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSN 159 (191)
Q Consensus 93 ~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~ 159 (191)
++++|.+|+++|.+.+.++.+.++.||++||+|..|+++|. +..|+..++.+||..||.++++.-.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~~~~yC~~cy~~~~~~~~ 69 (72)
T 1x61_A 4 GSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLR-GQHFYAVERRAYCEGCYVATLESGP 69 (72)
T ss_dssp CCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCT-TSCEEESSSCEEEHHHHHHHHHTCS
T ss_pred CCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCC-cCcCEeeCCeEECHHHHHHHHccCC
Confidence 46799999999997666889999999999999999999997 7789999999999999999886543
No 51
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=2.5e-15 Score=100.76 Aligned_cols=66 Identities=29% Similarity=0.577 Sum_probs=57.1
Q ss_pred CCCcccccccccccceeEeecCCCcccccCccccccccccCCCceEEeeCCeecccchhhcccccceeccccceeeeCCe
Q psy4072 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGK 82 (191)
Q Consensus 3 ~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~g~~yc~~c~~~~~~~~~~~~~c~~~~~~~~ 82 (191)
..+.|++|+++|.+.+.+ .++++.||+.||+|..|+++|... .| +.++++
T Consensus 14 ~~~~C~~C~~~I~~~~~v-~a~~~~~H~~CF~C~~C~~~L~~~-~~----------------------------~~~~g~ 63 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERL-LANQQVFHISCFRCSYCNNKLSLG-TY----------------------------ASLHGR 63 (91)
T ss_dssp SSCBCTTTCCBCCTTSEE-ECSSSEEETTTCBCTTTCCBCCTT-TC----------------------------CCSSSC
T ss_pred CCCcCccCCCccCCceeE-EECCCEECCCCCeeCCCCCCCCCC-Cc----------------------------EeECCE
Confidence 467899999999987766 489999999999999999999987 34 448888
Q ss_pred ecchhhhhhhhhhhhh
Q psy4072 83 TYCKRDYVRLFGTKCE 98 (191)
Q Consensus 83 ~~C~~c~~~~~~~~C~ 98 (191)
+||+.||.++++++|.
T Consensus 64 ~yC~~~y~~~f~~kc~ 79 (91)
T 2d8y_A 64 IYCKPHFNQLFKSKGN 79 (91)
T ss_dssp CCCHHHHHHHSCCCSC
T ss_pred EECHHHHHHHhCCCcC
Confidence 9999999999998886
No 52
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=2e-15 Score=96.25 Aligned_cols=66 Identities=24% Similarity=0.527 Sum_probs=58.7
Q ss_pred hhhhhhhhcCCCccCCCeEEEecCccccccccccccCCCCCCCCCceeeeCCccCCccccccccCCCCC
Q psy4072 92 LFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNG 160 (191)
Q Consensus 92 ~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~~ 160 (191)
.++++|.+|+++|.+. .+.+.++.||++||+|..|+++|. +..|+..++++||..||.++|+++..
T Consensus 3 ~~~~~C~~C~~~I~~~--~~~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~~~~yC~~cy~~~f~~~c~ 68 (70)
T 2d8z_A 3 SGSSGCVQCKKPITTG--GVTYREQPWHKECFVCTACRKQLS-GQRFTARDDFAYCLNCFCDLYASGPS 68 (70)
T ss_dssp CCCCBCSSSCCBCCSS--EEESSSSEEETTTSBCSSSCCBCT-TSCCEESSSSEECHHHHHHHTCCCCT
T ss_pred CCCCCCcccCCeeccc--eEEECccccCCCCCccCCCCCcCC-cCceEeeCCeEECHHHHHHHhccccC
Confidence 3567999999999853 588999999999999999999997 66899999999999999999998753
No 53
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=9.4e-16 Score=99.54 Aligned_cols=66 Identities=24% Similarity=0.542 Sum_probs=58.8
Q ss_pred hhhhhhhcCCCccCCCeEEEecCccccccccccccCCCCCCCCCceeeeCCccCCccccccccCCCC
Q psy4072 93 FGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSN 159 (191)
Q Consensus 93 ~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~ 159 (191)
++++|.+|+++|.+.+.++.+.++.||++||+|..|+++|.. ..|+..++.+||..||.++|+++-
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~-~~~~~~~g~~yC~~~y~~~f~~~C 75 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPE-GLFYEFEGRKYCEHDFQMLFAPCW 75 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGG-GCSEEETTEEECHHHHHHHCCCC-
T ss_pred CCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCC-CCeEeECCeEeCHHHHHHHhhccc
Confidence 457999999999876778889999999999999999999984 478899999999999999998863
No 54
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=2.4e-15 Score=95.83 Aligned_cols=65 Identities=23% Similarity=0.488 Sum_probs=57.6
Q ss_pred hhhhhhcCCCccCCCeEEEecCccccccccccccCCCCCCCCCceeeeCCccCCccccccccCCCCCC
Q psy4072 94 GTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGE 161 (191)
Q Consensus 94 ~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~~~ 161 (191)
+++|.+|+++|.+ .++.+.++.||++||+|..|+++|. +..|+..++++||..||.++++++..+
T Consensus 5 ~~~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~L~-~~~f~~~~g~~yC~~c~~~~~~~~~~s 69 (70)
T 2d8x_A 5 SSGCHQCGEFIIG--RVIKAMNNSWHPECFRCDLCQEVLA-DIGFVKNAGRHLCRPCHNREKASGPSS 69 (70)
T ss_dssp SSBCSSSCCBCCS--CCEEETTEEECTTTSBCSSSCCBCS-SSCCEEETTEEECHHHHHHHHCCCSCC
T ss_pred CCcCccCCCEecc--eEEEECcccccccCCEeCCCCCcCC-CCccEeECCeEECHHHhhhhcCCCCCC
Confidence 4689999999984 4688999999999999999999998 447888999999999999999887643
No 55
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.53 E-value=2.8e-15 Score=94.23 Aligned_cols=61 Identities=28% Similarity=0.595 Sum_probs=54.1
Q ss_pred hhhhhhhcCCCccCCCeEEEecCcccc--ccccccccCCCCCCCCCceeeeCCccCC-ccccccc
Q psy4072 93 FGTKCEKCNLNFKREDFVMRAKNKIYH--VQCFCCVVCGKQLVPGDEFALREDGLFC-KDDHEGM 154 (191)
Q Consensus 93 ~~~~C~~C~~~I~~~~~~~~~~~~~~H--~~Cf~C~~C~~~l~~~~~~~~~~~~~~C-~~c~~~~ 154 (191)
|+++|.+|+++|.+++..+.+.++.|| ++||+|+.|+++|. +..|+..+++||| ..||.++
T Consensus 1 fa~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~-~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 1 HAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLI-GQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp -CEECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCT-TSCCEEETTEEESSHHHHHTT
T ss_pred CcCCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCC-CCceEEECCEEecCHHHhhhh
Confidence 467899999999975568899999999 99999999999998 7789999999999 8888664
No 56
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.52 E-value=7.2e-15 Score=93.92 Aligned_cols=58 Identities=24% Similarity=0.599 Sum_probs=44.7
Q ss_pred CCCcccccccccccceeEeecCCCcccccCccccccccccCCCceEEeeCCeecccchh
Q psy4072 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61 (191)
Q Consensus 3 ~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~g~~yc~~c~ 61 (191)
..+.|++|+++|.+.+.++.++|+.||+.||+|..|+++|... .++..+|++||+.||
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~-~~~~~~g~~yC~~~y 67 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEG-LFYEFEGRKYCEHDF 67 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGG-CCEEETTEEECHHHH
T ss_pred CCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCC-CeEeECCeEeCHHHH
Confidence 5678999999999776543488999999999999999999887 566544444443333
No 57
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.52 E-value=5.4e-15 Score=95.74 Aligned_cols=66 Identities=23% Similarity=0.385 Sum_probs=58.8
Q ss_pred hhhhhhhhcCCCccCCCeEEEecCccccccccccccCCCCCCCCCceeeeCCccCCc-cccccccCCCC
Q psy4072 92 LFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCK-DDHEGMDKSSN 159 (191)
Q Consensus 92 ~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~-~c~~~~~~~~~ 159 (191)
.++++|.+|+++|.+++ .+.+.++.||++||+|..|+++|. +..|+..++.|||. .||.++|+++.
T Consensus 7 ~~~~~C~~C~~~I~~~~-~v~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~g~~yC~~~cy~~~f~~kc 73 (76)
T 2cu8_A 7 GMASKCPKCDKTVYFAE-KVSSLGKDWHKFCLKCERCSKTLT-PGGHAEHDGKPFCHKPCYATLFGSGP 73 (76)
T ss_dssp CCCCBCTTTCCBCCTTT-EEEETTEEEETTTCBCSSSCCBCC-TTSCEEETTEEECTTTHHHHHSCSSC
T ss_pred CCCCCCcCCCCEeECCe-EEEECCeEeeCCCCCCCCCCCccC-CCceEeECCEEecchHHHHHhccccc
Confidence 34579999999999766 467899999999999999999998 66899999999999 79999999875
No 58
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.52 E-value=4.6e-15 Score=112.63 Aligned_cols=72 Identities=29% Similarity=0.580 Sum_probs=63.3
Q ss_pred CCcccccccccccceeEeecCCCcccccCccccccccccCCCceEEeeCCeecccchhhcccccceeccccceeeeCCee
Q psy4072 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKT 83 (191)
Q Consensus 4 ~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~g~~yc~~c~~~~~~~~~~~~~c~~~~~~~~~ 83 (191)
.++|++|+++|.+.+.+. ++|+.||++||+|..|+++|.+. .| +.+++++
T Consensus 115 ~~~C~~C~~~I~~~~~v~-a~~~~~H~~CF~C~~C~~~L~~~-~~----------------------------~~~~g~~ 164 (192)
T 1b8t_A 115 SDGCPRCGQAVYAAEKVI-GAGKSWHKSCFRCAKCGKSLEST-TL----------------------------ADKDGEI 164 (192)
T ss_dssp CEECTTTSCEECSSSCEE-ETTEEECTTTCBCTTTCCBCCSS-SE----------------------------EEETTEE
T ss_pred CCcCCCCCCEecCcEEEe-cCCCccchhcCCccccCCCCCCC-cc----------------------------cccCCEE
Confidence 456999999999776664 88999999999999999999887 34 4599999
Q ss_pred cchhhhhhhhhhhhhhcCCCcc
Q psy4072 84 YCKRDYVRLFGTKCEKCNLNFK 105 (191)
Q Consensus 84 ~C~~c~~~~~~~~C~~C~~~I~ 105 (191)
||+.||.++|+++|.+|++++.
T Consensus 165 yC~~cy~~~f~~kc~~C~~~~g 186 (192)
T 1b8t_A 165 YCKGCYAKNFGPKGFGFGQGAG 186 (192)
T ss_dssp EEHHHHHHHTCCCCCCCCCCCC
T ss_pred eCHHHHHHhcCCcCCCCCCccc
Confidence 9999999999999999999863
No 59
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.52 E-value=1.6e-15 Score=107.29 Aligned_cols=72 Identities=35% Similarity=0.833 Sum_probs=63.8
Q ss_pred hhhhhhh--hhhhcCCCccCCCeEEEecCccccccccccccCCCCCCCCCceeeeCCccCCccccccccCCCCC
Q psy4072 89 YVRLFGT--KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNG 160 (191)
Q Consensus 89 ~~~~~~~--~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~~ 160 (191)
|.++|++ +|.+|+++|.+.+.++.+.++.||++||+|..|+++|..+..|+..++.+||..||.++++++..
T Consensus 1 Y~r~fg~~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~~~ 74 (123)
T 2l3k_A 1 YLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGG 74 (123)
T ss_dssp CCSSSSSSCCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHHTC
T ss_pred ChhhhCCCCcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhccccC
Confidence 4567777 99999999998777889999999999999999999996577899999999999999998877754
No 60
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=1.6e-15 Score=96.38 Aligned_cols=65 Identities=28% Similarity=0.615 Sum_probs=58.0
Q ss_pred hhhhhhhhcCCCccCCCeEEEecCccccccccccccCCCCCCCCCceeeeCCccCCccccccccCCCC
Q psy4072 92 LFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSN 159 (191)
Q Consensus 92 ~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~ 159 (191)
.++++|.+|+++|.+. .+.+.++.||++||+|..|+++|. +..|+..++++||..||.++|+++-
T Consensus 3 ~~~~~C~~C~~~I~~~--~~~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~~~~yC~~cy~~~f~~~C 67 (69)
T 2cur_A 3 SGSSGCVKCNKAITSG--GITYQDQPWHADCFVCVTCSKKLA-GQRFTAVEDQYYCVDCYKNFVSGPS 67 (69)
T ss_dssp CCCCCCSSSCCCCCTT--CEEETTEEECTTTTBCTTTCCBCT-TSCEEECSSCEEEHHHHHHHHTCSC
T ss_pred CCcCCCcccCCEeCcc--eEEECccccccCcCEECCCCCCCC-CCccEeECCEEECHHHhHHHhcCCC
Confidence 3467999999999853 578899999999999999999998 6789999999999999999998874
No 61
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.50 E-value=9.8e-15 Score=95.53 Aligned_cols=63 Identities=27% Similarity=0.595 Sum_probs=56.8
Q ss_pred hhhhhcCCCccCCCeEEEecCccccccccccccCCCCCCCCCceeeeCCccCCccccccccCCCCC
Q psy4072 95 TKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNG 160 (191)
Q Consensus 95 ~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~~ 160 (191)
++|.+|+++|.+++ .+.++++.||++||+|..|+++|. + .|+..+++|||..||.++|+++..
T Consensus 16 ~~C~~C~~~I~~~~-~v~a~~~~wH~~CF~C~~C~~~L~-~-~~~~~~g~~yC~~~y~~~fg~~C~ 78 (80)
T 2dj7_A 16 SHCAGCKEEIKHGQ-SLLALDKQWHVSCFKCQTCSVILT-G-EYISKDGVPYCESDYHAQFGSGPS 78 (80)
T ss_dssp SCCTTTCCCCSSSC-CEEETTEEECTTTCBCSSSCCBCS-S-CCEEETTEEECTTHHHHHTTCCST
T ss_pred CCCcCcCCeeCCCe-EEEECCcccccccCCcCcCCCCcC-C-CeEEECCEEECHHHHHHHcCCCCC
Confidence 58999999998765 577899999999999999999997 5 689999999999999999998864
No 62
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.1e-14 Score=94.40 Aligned_cols=59 Identities=20% Similarity=0.523 Sum_probs=46.8
Q ss_pred CCCCccccccccccc----ceeEeecCCCcccccCccccccccccCCCceEEeeCCeecccchhh
Q psy4072 2 RRLSLCVGCGGQIHD----QYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62 (191)
Q Consensus 2 ~~~~~C~~C~~~I~~----~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~g~~yc~~c~~ 62 (191)
...++|++|+++|.+ ..++ .++|+.||+.||+|..|+++|.+. .|+..+|++||..||.
T Consensus 13 ~~~~~C~~C~~~I~~~g~~~~~~-~a~~~~~H~~CF~C~~C~~~L~~~-~f~~~~~~~yC~~cy~ 75 (77)
T 2egq_A 13 FVAKKCAGCKNPITGFGKGSSVV-AYEGQSWHDYCFHCKKCSVNLANK-RFVFHQEQVYCPDCAK 75 (77)
T ss_dssp CCCCCCSSSCCCCCCCSSCCCEE-EETTEEEETTTCBCSSSCCBCTTS-CCCEETTEECCHHHHH
T ss_pred hhCccCcccCCcccCCCCCceeE-EECcceeCcccCEehhcCCCCCCC-ccEeECCEEEChHHhc
Confidence 346889999999996 3444 488999999999999999999987 6667666666666554
No 63
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.49 E-value=1.3e-14 Score=95.45 Aligned_cols=61 Identities=25% Similarity=0.427 Sum_probs=48.7
Q ss_pred CCCCcccccccccccceeEeecCCCcccccCccccccccccCCCceEE--eeCCeecccchhhcc
Q psy4072 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCF--VRDGKTYCKRDYVSS 64 (191)
Q Consensus 2 ~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~--~~~g~~yc~~c~~~~ 64 (191)
...+.|.+|+++|.+.+.+. ++|+.||+.||+|..|+++|... .|+ +.+|++||+.||..+
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~-a~~~~wH~~CF~C~~C~~~L~~~-~~~~~~~~g~~yC~~~y~~~ 75 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLC-VNGHFFHRSCFRCHTCEATLWPG-GYEQHPGDGHFYCLQHLPQT 75 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCC-BTTBCCBTTTCBCSSSCCBCCTT-SEECCTTTCCCEETTTCCCC
T ss_pred CCCCCCcccCCCcccceEEE-ECCCeeCCCcCEEcCCCCCcCCC-ceeEeCcCCEEEChHHHHhh
Confidence 35678999999998777664 88999999999999999999988 555 346666666666543
No 64
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.49 E-value=4e-14 Score=100.02 Aligned_cols=75 Identities=17% Similarity=0.375 Sum_probs=61.7
Q ss_pred cccccccccccceeEeecCCCcccccCccccccccccCCCceEEeeCCeecccchhhcccccceeccccceeeeCCeecc
Q psy4072 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYC 85 (191)
Q Consensus 6 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~g~~yc~~c~~~~~~~~~~~~~c~~~~~~~~~~C 85 (191)
.|++|+++|.+.+.++.++++.||+.||+|..|+++|.....|+ ..++++||
T Consensus 10 ~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~----------------------------~~~g~~yC 61 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYL----------------------------LINSDIVC 61 (123)
T ss_dssp CCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEE----------------------------ECSSSEEE
T ss_pred cccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEE----------------------------eeCCEEEc
Confidence 89999999997554435889999999999999999995432344 48899999
Q ss_pred hhhhhhhhhhhhhhcCCCccCCC
Q psy4072 86 KRDYVRLFGTKCEKCNLNFKRED 108 (191)
Q Consensus 86 ~~c~~~~~~~~C~~C~~~I~~~~ 108 (191)
..||.++++++|..++..+...+
T Consensus 62 ~~cy~~~~~~~~~~~~~~~~~~~ 84 (123)
T 2l3k_A 62 EQDIYEWTKINGGSGGSGGSGGD 84 (123)
T ss_dssp GGGHHHHHHHHTCCCCCCSCCSC
T ss_pred HHHhHHHhccccCCCCCCCccCC
Confidence 99999999999988877766443
No 65
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.49 E-value=2.3e-14 Score=93.84 Aligned_cols=67 Identities=18% Similarity=0.530 Sum_probs=51.7
Q ss_pred CCCcccccccccccceeEeecCCCcccccCccccccccccCCCceEEeeCCeecccchhhcccccceeccccceeeeCCe
Q psy4072 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGK 82 (191)
Q Consensus 3 ~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~g~~yc~~c~~~~~~~~~~~~~c~~~~~~~~ 82 (191)
..++|++|+++|.+..+ .++++.||++||+|..|+++|.....|.. +++++
T Consensus 14 ~~~~C~~C~~~I~~~~~--~a~~~~~H~~CF~C~~C~~~L~~g~~f~~---------------------------~~~~~ 64 (81)
T 1x6a_A 14 FGEFCHGCSLLMTGPFM--VAGEFKYHPECFACMSCKVIIEDGDAYAL---------------------------VQHAT 64 (81)
T ss_dssp SSCBCTTTCCBCCSCCB--CCTTCCBCTTSCBCTTTCCBCCTTSCEEE---------------------------CSSSC
T ss_pred cCCcCccCCCCcCceEE--EECCceeccccCCccCCCCccCCCCcEEE---------------------------eeCCE
Confidence 45789999999996544 38899999999999999999975323331 26777
Q ss_pred ecchhhhhhhhhhhhh
Q psy4072 83 TYCKRDYVRLFGTKCE 98 (191)
Q Consensus 83 ~~C~~c~~~~~~~~C~ 98 (191)
+||+.||.+++++.+.
T Consensus 65 ~~C~~c~~~~~~~~~s 80 (81)
T 1x6a_A 65 LYCGKCHNEVVSGPSS 80 (81)
T ss_dssp EEEHHHHHHHHCTTSC
T ss_pred EECHHHHHHHhcCCCC
Confidence 8888888877776553
No 66
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.48 E-value=1.3e-14 Score=102.51 Aligned_cols=57 Identities=37% Similarity=1.002 Sum_probs=42.5
Q ss_pred CCcccccccccccceeEeecCCCcccccCccccccccccCC-CceEEeeCCeecccchh
Q psy4072 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDE-NCTCFVRDGKTYCKRDY 61 (191)
Q Consensus 4 ~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~-~~~~~~~~g~~yc~~c~ 61 (191)
.+.|++|+++|.+.+++ .++|+.||+.||+|..|+++|.. ...|+.++|++||+.||
T Consensus 61 ~~~C~~C~~~I~~~~~v-~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy 118 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLL-YAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDY 118 (123)
T ss_dssp CSBBSSSSSBCCSSSEE-EETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHH
T ss_pred CCcCcCCCCCcCCcEEE-EeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHh
Confidence 56899999999998766 38899999999999999999972 12455533333333333
No 67
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.48 E-value=7.6e-15 Score=95.81 Aligned_cols=64 Identities=30% Similarity=0.511 Sum_probs=55.6
Q ss_pred hhhhhhhcCCCccCCCeEEEecCccccccccccccCCCCCCCCCceeeeCCccCCccccccccCCCCC
Q psy4072 93 FGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNG 160 (191)
Q Consensus 93 ~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~~ 160 (191)
++++|.+|+++|. +..+.++++.||++||+|..|+++|. +.. +..++.+||..||.++|++..+
T Consensus 14 ~~~~C~~C~~~I~--~~~v~a~~~~~H~~CF~C~~C~~~L~-~~~-f~~~g~~yC~~cy~~~f~p~~s 77 (79)
T 2cor_A 14 GKYICQKCHAIID--EQPLIFKNDPYHPDHFNCANCGKELT-ADA-RELKGELYCLPCHDKMGVSGPS 77 (79)
T ss_dssp CCCBCTTTCCBCC--SCCCCCSSSCCCTTTSBCSSSCCBCC-TTC-EEETTEEECHHHHHTTSCCSSC
T ss_pred CCCCCccCCCEec--ceEEEECcceeCCCCCEeCCCCCccC-CCC-EeECCEEeCHHHHHHhCCCCCC
Confidence 3579999999999 34688999999999999999999998 444 4889999999999999988654
No 68
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.47 E-value=1.4e-14 Score=96.64 Aligned_cols=64 Identities=23% Similarity=0.557 Sum_probs=57.3
Q ss_pred hhhhhhcCCCccCCCeEEEecCccccccccccccCCCCCCCCCceeeeCCccCCccccccccCCCCC
Q psy4072 94 GTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNG 160 (191)
Q Consensus 94 ~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~~ 160 (191)
.++|.+|+++|.+ .++.+.++.||++||+|..|+++|. +..|+..++.+||..||.++|+++..
T Consensus 25 ~~~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~g~~yC~~~y~~~f~p~~~ 88 (89)
T 1x64_A 25 MPLCDKCGSGIVG--AVVKARDKYRHPECFVCADCNLNLK-QKGYFFVEGELYCETHARARTSGPSS 88 (89)
T ss_dssp CCBCTTTCCBCCS--CCEESSSCEECTTTCCCSSSCCCTT-TSCCEEETTEEECHHHHHHHSSSCCC
T ss_pred CCCcccCCCEecc--cEEEECCceECccCCEecCCCCCCC-CCCeEeECCEEECHHHHHHHhCCCCC
Confidence 3689999999995 4688999999999999999999998 55788899999999999999998864
No 69
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.47 E-value=1.9e-14 Score=90.40 Aligned_cols=58 Identities=21% Similarity=0.563 Sum_probs=46.1
Q ss_pred CCcccccccccccc-eeEeecCCCccc--ccCccccccccccCCCceEEeeCCeecc-cchhhc
Q psy4072 4 LSLCVGCGGQIHDQ-YILRVAPDLEWH--AACLRCAECHQFLDENCTCFVRDGKTYC-KRDYVS 63 (191)
Q Consensus 4 ~~~C~~C~~~I~~~-~~~~~~~~~~~H--~~Cf~C~~C~~~l~~~~~~~~~~g~~yc-~~c~~~ 63 (191)
.+.|++|+++|.+. ..+ .++|+.|| ++||+|..|+++|.+. .|+..+|++|| .+||.+
T Consensus 2 a~~C~~C~~~I~~~~~~v-~a~~~~wH~~~~CF~C~~C~~~L~~~-~f~~~~g~~yC~~~C~~k 63 (65)
T 2iyb_E 2 AVVCQGCHNAIDPEVQRV-TYNNFSWHASTECFLCSCCSKCLIGQ-KFMPVEGMVFCSVECKKR 63 (65)
T ss_dssp CEECTTTSSEECTTSCEE-EETTEEEETTTTTSBCTTTCCBCTTS-CCEEETTEEESSHHHHHT
T ss_pred cCCCcCCCCeeccCceEE-EECCCccCCCCCCEECCCCCCcCCCC-ceEEECCEEecCHHHhhh
Confidence 46899999999963 444 48899999 9999999999999987 67776666666 555543
No 70
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.47 E-value=1.3e-14 Score=95.04 Aligned_cols=65 Identities=23% Similarity=0.542 Sum_probs=55.1
Q ss_pred hhhhhhcCCCccCCCeEEEecCccccccccccccCCCCCCCCCceeeeCCccCCccccccccCCCCC
Q psy4072 94 GTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNG 160 (191)
Q Consensus 94 ~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~~ 160 (191)
+++|.+|+++|.+++ .+.+.++.||++||+|..|+++|. +..|+..++++||..||.++|+++..
T Consensus 7 ~~~C~~C~~~I~~~~-~~~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~~~~yC~~cy~~~f~~~c~ 71 (81)
T 1a7i_A 7 GNKCGACGRTVYHAE-EVQCDGRSFHRCCFLCMVCRKNLD-STTVAIHDAEVYCKSCYGKKYGPKGY 71 (81)
T ss_dssp -CBCSSSCCBCSSTT-EEEETTEEEESSSEECSSSCCEEC-SSCCEEETTEEECSHHHHHHCC----
T ss_pred CCcCcCcCccccCce-eEEeCCcccccccCccCCCCCCCC-CCCeEeeCCEEECHHHHHHHhCCccc
Confidence 469999999998766 578899999999999999999998 55789999999999999999999864
No 71
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.46 E-value=4e-15 Score=97.11 Aligned_cols=64 Identities=19% Similarity=0.530 Sum_probs=57.4
Q ss_pred hhhhhhcCCCccCCCeEEEecCccccccccccccCCCCCCCCCceeeeCCccCCccccccccCCCCC
Q psy4072 94 GTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNG 160 (191)
Q Consensus 94 ~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~~ 160 (191)
+++|.+|+++|.+ .++.+.++.||++||+|..|+++|. +..|+..++++||..||.++|+++..
T Consensus 15 ~~~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~g~~yC~~cy~~~~~p~g~ 78 (79)
T 1x62_A 15 LPMCDKCGTGIVG--VFVKLRDRHRHPECYVCTDCGTNLK-QKGHFFVEDQIYCEKHARERVSGPSS 78 (79)
T ss_dssp CCCCSSSCCCCCS--SCEECSSCEECTTTTSCSSSCCCHH-HHCCEESSSCEECHHHHHHHHSSCCC
T ss_pred CCccccCCCCccC--cEEEECcceeCcCcCeeCCCCCCCC-CCCeEeECCEEECHHHHHHHhCCCCC
Confidence 3689999999995 3788999999999999999999997 55788999999999999999998863
No 72
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.46 E-value=2.2e-14 Score=92.81 Aligned_cols=65 Identities=25% Similarity=0.428 Sum_probs=57.5
Q ss_pred hhhhhcCCCccCCCeEEEecCccccccccccccCCCCCCCCCceeeeCCccCCc-cccccccCCCCCC
Q psy4072 95 TKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCK-DDHEGMDKSSNGE 161 (191)
Q Consensus 95 ~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~-~c~~~~~~~~~~~ 161 (191)
|+|.+|+++|.+++ .+.+.++.||++||+|..|+++|. +..|+..++.+||. .||.++|+++...
T Consensus 1 p~C~~C~~~I~~~~-~v~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~g~~yC~~~cy~~~f~~~C~~ 66 (76)
T 1iml_A 1 PKCPKCDKEVYFAE-RVTSLGKDWHRPCLKCEKCGKTLT-SGGHAEHEGKPYCNHPCYSAMFGPKGFG 66 (76)
T ss_dssp CBCTTTSSBCCGGG-EEEETTEEEETTTCBCTTTCCBCC-TTTEEEETTEEEETTTHHHHHSSCCCSS
T ss_pred CcCCCCCCEEECce-EEEECCccccCCCCCccccCccCC-CCceECcCCeEeeCHHHHHHHhCccCCC
Confidence 47999999998665 577899999999999999999998 45899999999999 6999999998644
No 73
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.45 E-value=4.2e-14 Score=94.72 Aligned_cols=66 Identities=21% Similarity=0.532 Sum_probs=58.7
Q ss_pred hhhhhhhcCCCccCCCeEEEecCccccccccccccCCCCCCCCCceeeeCCccCCccccccccCCCCC
Q psy4072 93 FGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNG 160 (191)
Q Consensus 93 ~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~~ 160 (191)
.+++|.+|+++|.+.+ .+.+.++.||++||+|..|+++|. +..|+..++.+||..||.++|+++..
T Consensus 14 ~~~~C~~C~~~I~~~~-~v~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~g~~yC~~~y~~~f~~kc~ 79 (91)
T 2d8y_A 14 ARETCVECQKTVYPME-RLLANQQVFHISCFRCSYCNNKLS-LGTYASLHGRIYCKPHFNQLFKSKGN 79 (91)
T ss_dssp SSCBCTTTCCBCCTTS-EEECSSSEEETTTCBCTTTCCBCC-TTTCCCSSSCCCCHHHHHHHSCCCSC
T ss_pred CCCcCccCCCccCCce-eEEECCCEECCCCCeeCCCCCCCC-CCCcEeECCEEECHHHHHHHhCCCcC
Confidence 3569999999999766 468999999999999999999998 44688899999999999999999874
No 74
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.45 E-value=2.4e-14 Score=97.63 Aligned_cols=68 Identities=19% Similarity=0.473 Sum_probs=60.6
Q ss_pred hhhhhhhcCCCccCCCeEEEecCccccccccccccCCCCCCCCCceeeeCCccCCccccccccCCCCCC
Q psy4072 93 FGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGE 161 (191)
Q Consensus 93 ~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~~~ 161 (191)
++++|.+|+++|.+++.++.++++.||++||+|..|+++|. +..|+..++++||..||.++++++-..
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~g~~yC~~cy~~~~~~~C~~ 71 (101)
T 2cup_A 4 GSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLA-NETFVAKDNKILCNKCTTREDSPKCKG 71 (101)
T ss_dssp CCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTT-SSCCEEETTEEECHHHHTTCCCCBCSS
T ss_pred CCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCC-cCeeECcCCEEEChhHhhhhcCCcccc
Confidence 45799999999986456889999999999999999999997 668999999999999999999988643
No 75
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.42 E-value=3.9e-14 Score=100.07 Aligned_cols=64 Identities=22% Similarity=0.473 Sum_probs=56.0
Q ss_pred hhhhhhhhcCCCccCCCeEEEecCccccccccccccCCCCCC-CCCceeeeCCccCCccccccccC
Q psy4072 92 LFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLV-PGDEFALREDGLFCKDDHEGMDK 156 (191)
Q Consensus 92 ~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~-~~~~~~~~~~~~~C~~c~~~~~~ 156 (191)
.++++|.+|+++|.+. .++.+.++.||++||+|..|+++|. .+..|+.+++++||..||.++|+
T Consensus 59 ~~~~~C~~C~~~I~~~-~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 59 LSWKRCAGCGGKIADR-FLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp SSCSBBSSSSSBCCSS-SEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred ccCCcCcCCCCCcCCc-EEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 4457999999999965 3688999999999999999999996 25689999999999999998875
No 76
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.41 E-value=7.3e-14 Score=97.38 Aligned_cols=64 Identities=22% Similarity=0.572 Sum_probs=57.6
Q ss_pred hhhhhcCCCccCCCeEEEecCccccccccccccCCCCCCC-CCceeeeCCccCCccccccccCCCC
Q psy4072 95 TKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVP-GDEFALREDGLFCKDDHEGMDKSSN 159 (191)
Q Consensus 95 ~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~-~~~~~~~~~~~~C~~c~~~~~~~~~ 159 (191)
++|++|+++|.+. .++.+.++.||++||+|+.|+++|.. +..|+..+++|||..||.++|+++.
T Consensus 4 ~~C~~C~~~I~~~-~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c 68 (114)
T 1j2o_A 4 LTCGGCQQNIGDR-YFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGG 68 (114)
T ss_dssp BCBSSSCSCBCSS-EEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCC
T ss_pred CCCcCCCCeeCCc-EEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCccc
Confidence 5899999999954 47889999999999999999999973 4689999999999999999999984
No 77
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.40 E-value=6.6e-14 Score=99.20 Aligned_cols=66 Identities=21% Similarity=0.455 Sum_probs=59.6
Q ss_pred hhhhhhhcCCCccCCCeEEEecCccccccccccccCCCCCCCCCceeeeCCccCCccccccccCCCCC
Q psy4072 93 FGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNG 160 (191)
Q Consensus 93 ~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~~ 160 (191)
++++|.+|+++|.+++ ++.++++.||++||+|+.|+++|. +..|+..+++|||..||.++++++-.
T Consensus 2 ~~~~C~~C~~~I~~~~-~~~a~~~~~H~~CF~C~~C~~~L~-~~~f~~~~g~~yC~~cy~~~~~~~C~ 67 (126)
T 2xqn_T 2 EKPRCAGCDELIFSNE-YTQAENQNWHLKHFCCFDCDSILA-GEIYVMVNDKPVCKPCYVKNHAVVCQ 67 (126)
T ss_dssp CCCBBTTTSSBCCSSC-EEEETTEEECGGGSBCTTTCCBCT-TSEEEEETTEEEEHHHHHHHSCCBCT
T ss_pred cCCCCccCCCEeCCce-EEeeCCCCccCCCCCcCCCCCCCC-cCEEEeECCEEechHHhCcCcCccCc
Confidence 4679999999999754 678999999999999999999998 66899999999999999999998854
No 78
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.40 E-value=7.8e-14 Score=91.61 Aligned_cols=62 Identities=16% Similarity=0.446 Sum_probs=53.1
Q ss_pred hhhhhcCCCccCCCeEEEecCccccccccccccCCCCCCCCCcee--eeCCccCCccccccccCCC
Q psy4072 95 TKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFA--LREDGLFCKDDHEGMDKSS 158 (191)
Q Consensus 95 ~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~--~~~~~~~C~~c~~~~~~~~ 158 (191)
++|.+|+++|.+.+. +.++++.||++||+|..|+++|. +..|. ..++++||..||.+++++.
T Consensus 16 ~~C~~C~~~I~~~e~-v~a~~~~wH~~CF~C~~C~~~L~-~~~~~~~~~~g~~yC~~~y~~~~~~~ 79 (82)
T 2co8_A 16 DLCALCGEHLYVLER-LCVNGHFFHRSCFRCHTCEATLW-PGGYEQHPGDGHFYCLQHLPQTDSGP 79 (82)
T ss_dssp CBCSSSCCBCCTTTB-CCBTTBCCBTTTCBCSSSCCBCC-TTSEECCTTTCCCEETTTCCCCCCCC
T ss_pred CCCcccCCCcccceE-EEECCCeeCCCcCEEcCCCCCcC-CCceeEeCcCCEEEChHHHHhhhcCC
Confidence 589999999987665 56899999999999999999998 45666 3689999999999888764
No 79
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.34 E-value=9.1e-14 Score=98.06 Aligned_cols=64 Identities=19% Similarity=0.407 Sum_probs=56.9
Q ss_pred hhhhhhhcCCCccCCCeEEEecCccccccccccccCCCCCCC-CCceeeeCCccCCccccccccCC
Q psy4072 93 FGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVP-GDEFALREDGLFCKDDHEGMDKS 157 (191)
Q Consensus 93 ~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~-~~~~~~~~~~~~C~~c~~~~~~~ 157 (191)
++++|.+|+++|.+.+ ++.+.++.||++||+|+.|+++|.. +..|+..+++|||..||.++|++
T Consensus 4 ~~~~C~~C~~~I~~~~-~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~ 68 (122)
T 1m3v_A 4 SWKRCAGCGGKIADRF-LLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN 68 (122)
T ss_dssp CCCCBSSSSSCCCSSC-CEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCC
T ss_pred CCCCCcccCCEeCCcE-EEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCC
Confidence 4579999999999753 5788999999999999999999962 45799999999999999999998
No 80
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.27 E-value=2.8e-12 Score=83.78 Aligned_cols=58 Identities=21% Similarity=0.445 Sum_probs=45.1
Q ss_pred CCCcccccccccccceeEeecCCCcccccCccccccccccCCCceEEeeCCe-ecccchhhc
Q psy4072 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGK-TYCKRDYVS 63 (191)
Q Consensus 3 ~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~g~-~yc~~c~~~ 63 (191)
..++|++|+++|.+.. + .++|+.||+.||+|..|+++|... .++..+++ +||..||..
T Consensus 14 ~~~~C~~C~~~I~~~~-v-~a~~~~wH~~CF~C~~C~~~L~~~-~~~~~~~~~~~C~~C~~~ 72 (81)
T 1v6g_A 14 YGTRCFSCDQFIEGEV-V-SALGKTYHPDCFVCAVCRLPFPPG-DRVTFNGKECMCQKCSLP 72 (81)
T ss_dssp CCCBCTTTCCBCCSCC-E-EETTEEECTTTSSCSSSCCCCCSS-SCEEEETTEEEEHHHHSC
T ss_pred hCCcCccccCEeccce-E-EECCceeCccCCccccCCCCCCCC-CEEEeCCCCEEChhhhcc
Confidence 4579999999999754 3 388999999999999999999876 45554443 466666654
No 81
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.25 E-value=4e-12 Score=96.05 Aligned_cols=69 Identities=19% Similarity=0.378 Sum_probs=41.2
Q ss_pred cccccccccccceeEeecCCCcccccCccccccccccCCCceEEeeCCeecccchhhcccccceeccccceeeeCCeecc
Q psy4072 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYC 85 (191)
Q Consensus 6 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~g~~yc~~c~~~~~~~~~~~~~c~~~~~~~~~~C 85 (191)
.|.+|+++|.+.+.++.+.++.||+.||+|..|+++|.....| +..++++||
T Consensus 71 ~C~~C~~~I~~~e~~i~a~~~~~H~~CF~C~~C~~~L~~g~~f----------------------------~~~~g~~yC 122 (188)
T 1rut_X 71 ACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRF----------------------------HYINGSLFC 122 (188)
T ss_dssp ECTTTCCEECTTSEEEEETTEEECGGGCBCTTTCCBCCTTCEE----------------------------EEETTEEEE
T ss_pred ccccCCCccccCcEEEEcCCCEEeCCCCeECCCCCCCCCCCeE----------------------------EEECCeEEC
Confidence 5777777777644333466777777777777777777533234 447777777
Q ss_pred hhhhhhhhhhhhhhcCC
Q psy4072 86 KRDYVRLFGTKCEKCNL 102 (191)
Q Consensus 86 ~~c~~~~~~~~C~~C~~ 102 (191)
+.||.++++++|...+.
T Consensus 123 ~~c~~~~~~~~~~~~g~ 139 (188)
T 1rut_X 123 EHDRPTALINGHLNSGG 139 (188)
T ss_dssp GGGCCTTTC--------
T ss_pred HHHHHHHhcccccccCC
Confidence 77777777777766554
No 82
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.25 E-value=2e-12 Score=97.20 Aligned_cols=77 Identities=19% Similarity=0.383 Sum_probs=61.4
Q ss_pred Ceecchhhhh---hhhhhhhhhcCCCccCCCeEEEecCccccccccccccCCCCCCCCCceeeeCCccCCccccccccCC
Q psy4072 81 GKTYCKRDYV---RLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKS 157 (191)
Q Consensus 81 ~~~~C~~c~~---~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~ 157 (191)
+..+|...+. ....++|.+|+++|.+. .++.+.++.||++||+|..|+++|. +..| ..++++||..||.++|++
T Consensus 44 ~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~-~~~~a~~~~wH~~CF~C~~C~~~L~-~~~f-~~~g~~yC~~~y~~~f~~ 120 (182)
T 2jtn_A 44 DEGGSGGHMGSGGTPEIPMCAGCDQHILDR-FILKALDRHWHSKCLKCSDCHVPLA-ERCF-SRGESVYCKDDFFKRFGT 120 (182)
T ss_dssp SSCSSSSSCCCCCCCSCCBCBTSSSBCCCS-EEEEETTEEECSSTTSCTTTCCCCS-SCCE-EETTEEECHHHHHHTTSC
T ss_pred cccccccccccCCCCCCCcCccCCCCccCc-eeEEecCCeEccccCccCCCCCccC-CCce-eECCEeeecCcccccccc
Confidence 3345554443 23346999999999964 4678899999999999999999998 4444 789999999999999998
Q ss_pred CCC
Q psy4072 158 SNG 160 (191)
Q Consensus 158 ~~~ 160 (191)
+-.
T Consensus 121 kC~ 123 (182)
T 2jtn_A 121 KCA 123 (182)
T ss_dssp CCT
T ss_pred ccc
Confidence 854
No 83
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.25 E-value=6.2e-12 Score=89.47 Aligned_cols=45 Identities=22% Similarity=0.563 Sum_probs=30.8
Q ss_pred cccccccccccceeEeecCCCcccccCccccccccccCCCceEEe
Q psy4072 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFV 50 (191)
Q Consensus 6 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~ 50 (191)
.|.+|+++|.+.+.++.++++.||+.||+|..|+++|.....|+.
T Consensus 68 ~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~ 112 (131)
T 2xjy_A 68 LCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLL 112 (131)
T ss_dssp ECTTTCCEECTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEE
T ss_pred ChhhcCCccCccceeEeeCCceECccCcccCCCCCCCCCCCEEEE
Confidence 688888888765433346788888888888888888853324554
No 84
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.16 E-value=3.1e-11 Score=89.65 Aligned_cols=90 Identities=21% Similarity=0.311 Sum_probs=52.8
Q ss_pred CCcccccccccccceeEeecCCCcccccCccccccccccCCCceEEeeCCeecccchhhcccccceeccccceeeeCCee
Q psy4072 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKT 83 (191)
Q Consensus 4 ~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~g~~yc~~c~~~~~~~~~~~~~c~~~~~~~~~ 83 (191)
.+.|.+|+++|.+.+.++.++++.||+.||+|..|+++|.....++. ..++++
T Consensus 65 ~~~C~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~---------------------------~~~g~~ 117 (169)
T 2rgt_A 65 GTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYL---------------------------MEDSRL 117 (169)
T ss_dssp SCBCTTTCCBCCTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEE---------------------------CTTSCE
T ss_pred cccccccccccCCCcEEEEcCCceEeeCCCcCCCCCCCCCCCCceEE---------------------------ccCCeE
Confidence 45678888888776554447778888888888888888764323322 256677
Q ss_pred cchhhhhhhhhhhhh--hcCCCccCCCeEEEecCccccccccc
Q psy4072 84 YCKRDYVRLFGTKCE--KCNLNFKREDFVMRAKNKIYHVQCFC 124 (191)
Q Consensus 84 ~C~~c~~~~~~~~C~--~C~~~I~~~~~~~~~~~~~~H~~Cf~ 124 (191)
||+.||.+.+...+. +...+. ..+++....+|...|.
T Consensus 118 ~C~~c~~~~~~~~~~~~~~~rpr----t~~~~~q~~~l~~~f~ 156 (169)
T 2rgt_A 118 VCKADYETAKQGGSGGSGGSGGG----TPMVAASPERHDGGLQ 156 (169)
T ss_dssp EEHHHHHHHHHCC--------------EEEECCCCEECCSSCC
T ss_pred ECHHHHHHHhhccCCCCCCcCCC----CcccHHHHHHHHHHHh
Confidence 777777766654332 222222 2455555666666654
No 85
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=97.93 E-value=3.3e-06 Score=44.46 Aligned_cols=29 Identities=28% Similarity=0.578 Sum_probs=25.6
Q ss_pred CCcccccccccccceeEeecCCCcccccCc
Q psy4072 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACL 33 (191)
Q Consensus 4 ~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf 33 (191)
.+.|..|+++|+..+.+. ++|+.||..||
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~-~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVN-CLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGGCCC-SSSSCCCGGGC
T ss_pred CCcCCccCCEEecceeEE-ECCeEecccCC
Confidence 468999999999888774 88999999998
No 86
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=97.55 E-value=7.7e-06 Score=43.00 Aligned_cols=28 Identities=21% Similarity=0.618 Sum_probs=24.5
Q ss_pred hhhhhcCCCccCCCeEEEecCcccccccc
Q psy4072 95 TKCEKCNLNFKREDFVMRAKNKIYHVQCF 123 (191)
Q Consensus 95 ~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf 123 (191)
++|++|++.|++.|+ +.+.++.||..||
T Consensus 4 ~~C~~C~k~Vy~~Ek-~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEK-VNCLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGC-CCSSSSCCCGGGC
T ss_pred CcCCccCCEEeccee-EEECCeEecccCC
Confidence 589999999998875 4578999999998
No 87
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=81.02 E-value=1.3 Score=29.98 Aligned_cols=104 Identities=13% Similarity=0.282 Sum_probs=54.3
Q ss_pred CCCcccccccccccc-----eeEeecCCCcccccCc--------cccccccccCCCceE--EeeCCeecccchhhccccc
Q psy4072 3 RLSLCVGCGGQIHDQ-----YILRVAPDLEWHAACL--------RCAECHQFLDENCTC--FVRDGKTYCKRDYVSSEKN 67 (191)
Q Consensus 3 ~~~~C~~C~~~I~~~-----~~~~~~~~~~~H~~Cf--------~C~~C~~~l~~~~~~--~~~~g~~yc~~c~~~~~~~ 67 (191)
+...|.-|...+.+. ..+...-|..||..|+ .|-.|++.+...... +..++...|.-|......+
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i~~~~~~C~iC~~~~~~~ 85 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIGSGTVSCPICMDGYSEI 85 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBCSSSSCBCTTTCCBHHHH
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccccccCCCCCCCCCCCCccccc
Confidence 345788898877643 1122467999999887 799999998876221 1123344444443321110
Q ss_pred ceeccccceeeeCCeecchhhhhhhhh--hhhhhcCCCccCC
Q psy4072 68 QFLDENCTCFVRDGKTYCKRDYVRLFG--TKCEKCNLNFKRE 107 (191)
Q Consensus 68 ~~~~~~c~~~~~~~~~~C~~c~~~~~~--~~C~~C~~~I~~~ 107 (191)
...... .....=|..||..|..+-.. ..|+.|...|..+
T Consensus 86 ~~~~~~-~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 86 VQNGRL-IVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp HHTTCC-EEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred cccCcc-eEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 000000 01112355666666544332 3566666666543
No 88
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=77.45 E-value=3.5 Score=27.38 Aligned_cols=58 Identities=17% Similarity=0.314 Sum_probs=33.5
Q ss_pred CCeecchhhhhhhhhhhhhhcCCCccCCCeEEEe--cCccccccccccccCCCCCCCCCceeeeCCccCCccccccc
Q psy4072 80 DGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRA--KNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154 (191)
Q Consensus 80 ~~~~~C~~c~~~~~~~~C~~C~~~I~~~~~~~~~--~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~ 154 (191)
.+..+|.+|. .|..|++.-.+. .++.- -++.||..|..- +|. . +.++.-+|..|....
T Consensus 46 ~~~W~C~~C~------~C~~C~~~~~~~-~ll~Cd~C~~~yH~~Cl~p-----pl~-~----~P~g~W~C~~C~~c~ 105 (111)
T 2ysm_A 46 RAGWQCPECK------VCQNCKQSGEDS-KMLVCDTCDKGYHTFCLQP-----VMK-S----VPTNGWKCKNCRICI 105 (111)
T ss_dssp STTCCCTTTC------CCTTTCCCSCCT-TEEECSSSCCEEEGGGSSS-----CCS-S----CCSSCCCCHHHHCCS
T ss_pred ccCccCCcCC------cccccCccCCCC-CeeECCCCCcHHhHHhcCC-----ccc-c----CCCCCcCCcCCcCcC
Confidence 3455666662 577888765433 23432 367899998753 332 1 123567788885443
No 89
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=74.85 E-value=1.5 Score=25.59 Aligned_cols=29 Identities=24% Similarity=0.479 Sum_probs=19.4
Q ss_pred cccccccccCCCceEEeeCCeecc-cchhhc
Q psy4072 34 RCAECHQFLDENCTCFVRDGKTYC-KRDYVS 63 (191)
Q Consensus 34 ~C~~C~~~l~~~~~~~~~~g~~yc-~~c~~~ 63 (191)
.|..|+..++.. .-+..+|+.|| +.|..-
T Consensus 9 aC~~C~c~Vs~~-eai~~dGK~YCSe~Ca~g 38 (55)
T 1jjd_A 9 ACEPCLCNVDPS-KAIDRNGLYYCSEACADG 38 (55)
T ss_dssp SSTTCCCCBCTT-TSEESSSCEESSHHHHHT
T ss_pred cCCCCeeEechH-HhhhcCCeEEehHHHHcc
Confidence 467888888776 55666777776 455543
No 90
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=71.66 E-value=3 Score=23.36 Aligned_cols=41 Identities=24% Similarity=0.323 Sum_probs=26.7
Q ss_pred CCCccccccccccc--ceeEeecCCCcccccCc--------cccccccccC
Q psy4072 3 RLSLCVGCGGQIHD--QYILRVAPDLEWHAACL--------RCAECHQFLD 43 (191)
Q Consensus 3 ~~~~C~~C~~~I~~--~~~~~~~~~~~~H~~Cf--------~C~~C~~~l~ 43 (191)
....|.-|...+.. ...+...-+..||..|+ +|-.|+++|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45678888888754 22332356778888876 4777776664
No 91
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=63.17 E-value=8.6 Score=23.23 Aligned_cols=47 Identities=17% Similarity=0.428 Sum_probs=29.4
Q ss_pred cCccccccccccCCCceEEeeCCeecccchhhcccccceeccccceeeeCCeecchhhhhhhhh---hhhhhcCCCccCC
Q psy4072 31 ACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFG---TKCEKCNLNFKRE 107 (191)
Q Consensus 31 ~Cf~C~~C~~~l~~~~~~~~~~g~~yc~~c~~~~~~~~~~~~~c~~~~~~~~~~C~~c~~~~~~---~~C~~C~~~I~~~ 107 (191)
.-|.|..|...+... ... .-|..||..|..+.+. ..|+.|+.++...
T Consensus 7 ~~~~C~IC~~~~~~P--v~~----------------------------~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 7 EYFRCPISLELMKDP--VIV----------------------------STGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSCTTTSCCCSSE--EEE----------------------------TTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred ccCCCCCccccccCC--EEc----------------------------CCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 347788888877664 333 4456666666554442 3688888877644
No 92
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=62.71 E-value=7.3 Score=24.57 Aligned_cols=31 Identities=16% Similarity=0.408 Sum_probs=20.5
Q ss_pred hhhhcCCCccCCCeEEEecCccccccccccccCCCCCCC
Q psy4072 96 KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVP 134 (191)
Q Consensus 96 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~ 134 (191)
.|+.|++++. ++.+-|.. =+.|..|+..++.
T Consensus 33 fCPeCgq~Le----~lkACGA~----~yFC~~C~~LiSk 63 (81)
T 2jrp_A 33 LCPDCRQPLQ----VLKACGAV----DYFCQNGHGLISK 63 (81)
T ss_dssp ECSSSCSCCC----EEEETTEE----EECCTTTTCCCCT
T ss_pred cCcchhhHHH----HHHhcCCc----CeeeccCCCEeec
Confidence 7888888774 34444433 4678888888874
No 93
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.26 E-value=4.9 Score=24.83 Aligned_cols=42 Identities=17% Similarity=0.536 Sum_probs=29.9
Q ss_pred CCCcccccccccccceeEeecCCCcccccCc----------cccccccccCCC
Q psy4072 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACL----------RCAECHQFLDEN 45 (191)
Q Consensus 3 ~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf----------~C~~C~~~l~~~ 45 (191)
....|+.|...|.....-. .-+..||..|+ +|-.|+..+...
T Consensus 14 ~i~~C~IC~~~i~~g~~C~-~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCE-TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSCBCSSSCCBCSSSEECS-SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCCcCcchhhHcccCCccC-CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 4567999999998665442 45778999887 377777766543
No 94
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=58.78 E-value=2.6 Score=31.42 Aligned_cols=29 Identities=34% Similarity=0.746 Sum_probs=19.6
Q ss_pred ccccccccccCCCceEEeeCCeecccchhh
Q psy4072 33 LRCAECHQFLDENCTCFVRDGKTYCKRDYV 62 (191)
Q Consensus 33 f~C~~C~~~l~~~~~~~~~~g~~yc~~c~~ 62 (191)
.+|..|+...... .....+|+.+|.+|+.
T Consensus 173 ~~C~~CGE~~~~~-~~~~~~g~~~C~~C~~ 201 (204)
T 2gvi_A 173 VRCDVCGEYTYEA-DAKLLNGKPVCKPDYY 201 (204)
T ss_dssp EECTTTCCEEEGG-GCEEETTEEECHHHHH
T ss_pred eECCCCCCchhhc-ceeeeCCcEEChhhhc
Confidence 4699999888776 4445566666666654
No 95
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=57.54 E-value=27 Score=23.10 Aligned_cols=19 Identities=26% Similarity=0.601 Sum_probs=13.1
Q ss_pred eCCeecchhhhhhhhhhhhhhcCCCc
Q psy4072 79 RDGKTYCKRDYVRLFGTKCEKCNLNF 104 (191)
Q Consensus 79 ~~~~~~C~~c~~~~~~~~C~~C~~~I 104 (191)
..|.-||..| .|..|++..
T Consensus 50 P~g~W~Cp~c-------~C~~C~k~~ 68 (107)
T 4gne_A 50 PYGKWECPWH-------QCDECSSAA 68 (107)
T ss_dssp CSSCCCCGGG-------BCTTTCSBC
T ss_pred CCCCEECCCC-------CCCcCCCCC
Confidence 4567788777 677777654
No 96
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=55.50 E-value=2.8 Score=23.05 Aligned_cols=18 Identities=11% Similarity=0.111 Sum_probs=14.8
Q ss_pred eeeeCCeecchhhhhhhh
Q psy4072 76 CFVRDGKTYCKRDYVRLF 93 (191)
Q Consensus 76 ~~~~~~~~~C~~c~~~~~ 93 (191)
|+..+-+|+|.+|++++-
T Consensus 22 ~mSVnTQP~CHEC~errq 39 (49)
T 2eqg_A 22 FMSVNTQPLCHECSERRQ 39 (49)
T ss_dssp BCCTTTTTSCHHHHHHHH
T ss_pred EEEecCccchHHHHHHHh
Confidence 557888999999998765
No 97
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=54.90 E-value=17 Score=24.37 Aligned_cols=12 Identities=42% Similarity=0.708 Sum_probs=9.3
Q ss_pred CCCCCcceeeee
Q psy4072 179 EGSNSGKIQLYL 190 (191)
Q Consensus 179 ~~~~~~~~~~~~ 190 (191)
.+++.|.|++||
T Consensus 74 h~~~~~~MkLYl 85 (111)
T 1d4u_A 74 HHSQWGDMKLYL 85 (111)
T ss_dssp SSCCCSCCEEEC
T ss_pred CCCCCccceeeh
Confidence 345779999998
No 98
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.22 E-value=6.1 Score=23.12 Aligned_cols=29 Identities=21% Similarity=0.616 Sum_probs=18.8
Q ss_pred eCCeecchhhhhhhhh---hhhhhcCCCccCC
Q psy4072 79 RDGKTYCKRDYVRLFG---TKCEKCNLNFKRE 107 (191)
Q Consensus 79 ~~~~~~C~~c~~~~~~---~~C~~C~~~I~~~ 107 (191)
.=|..||..|..+... ..|+.|+..|...
T Consensus 32 ~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 32 ECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp SSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 3455677777666552 3688888877643
No 99
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=52.28 E-value=4.2 Score=27.24 Aligned_cols=57 Identities=18% Similarity=0.287 Sum_probs=33.1
Q ss_pred eCCeecchhhhhhhhhhhhhhcCCCccCCCeEEE--ecCccccccccccccCCCCCCCCCceeeeCCccCCccccc
Q psy4072 79 RDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMR--AKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHE 152 (191)
Q Consensus 79 ~~~~~~C~~c~~~~~~~~C~~C~~~I~~~~~~~~--~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~ 152 (191)
+.+.-+|..| ..|..|+....+++ ++. .-++.||..|..- +|. . +..+.-+|..|..
T Consensus 49 ~~~~W~C~~C------~~C~~C~~~~~~~~-ll~Cd~C~~~yH~~Cl~p-----pl~-~----~P~g~W~C~~C~~ 107 (114)
T 2kwj_A 49 KTYKWQCIEC------KSCILCGTSENDDQ-LLFCDDCDRGYHMYCLNP-----PVA-E----PPEGSWSCHLCWE 107 (114)
T ss_dssp HHTTCCCGGG------CCCTTTTCCTTTTT-EEECSSSCCEEETTTSSS-----CCS-S----CCSSCCCCHHHHH
T ss_pred CCCccCcccc------CccCcccccCCCCc-eEEcCCCCccccccccCC-----Ccc-C----CCCCCeECccccc
Confidence 3445567666 25888887655443 343 2367899998653 332 1 1245567887743
No 100
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=52.01 E-value=8.5 Score=21.38 Aligned_cols=30 Identities=20% Similarity=0.304 Sum_probs=17.9
Q ss_pred CCccccccccccccee-Eeec-CCCcccccCc
Q psy4072 4 LSLCVGCGGQIHDQYI-LRVA-PDLEWHAACL 33 (191)
Q Consensus 4 ~~~C~~C~~~I~~~~~-~~~~-~~~~~H~~Cf 33 (191)
...|.-|...+..... .... -|..||..|+
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci 36 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLPRCGHGFHAECV 36 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSSCCEECTTHH
T ss_pred CCcCccCCccccCCCceEECCCCCCcccHHHH
Confidence 4568888877765332 2122 4667777775
No 101
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=50.87 E-value=5.5 Score=22.90 Aligned_cols=43 Identities=16% Similarity=0.441 Sum_probs=30.8
Q ss_pred CCCcccccccccccc-----eeEeecCCCcccccCc--------cccccccccCCC
Q psy4072 3 RLSLCVGCGGQIHDQ-----YILRVAPDLEWHAACL--------RCAECHQFLDEN 45 (191)
Q Consensus 3 ~~~~C~~C~~~I~~~-----~~~~~~~~~~~H~~Cf--------~C~~C~~~l~~~ 45 (191)
....|.-|...+... ..+...-|..||..|+ +|-.|+.++...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 345788888877643 1222367889999987 589999888765
No 102
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.03 E-value=10 Score=22.79 Aligned_cols=40 Identities=25% Similarity=0.550 Sum_probs=21.5
Q ss_pred Ccccccccccccce-eEeecCCCcccccCc--------cccccccccCC
Q psy4072 5 SLCVGCGGQIHDQY-ILRVAPDLEWHAACL--------RCAECHQFLDE 44 (191)
Q Consensus 5 ~~C~~C~~~I~~~~-~~~~~~~~~~H~~Cf--------~C~~C~~~l~~ 44 (191)
..|.-|...+.... +....-+..||..|+ .|-.|+..+..
T Consensus 24 ~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 24 TLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp CEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 45666766665432 222235666666665 36666655544
No 103
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.73 E-value=15 Score=21.72 Aligned_cols=28 Identities=36% Similarity=0.664 Sum_probs=18.5
Q ss_pred CCeecchhhhhhhhh--hhhhhcCCCccCC
Q psy4072 80 DGKTYCKRDYVRLFG--TKCEKCNLNFKRE 107 (191)
Q Consensus 80 ~~~~~C~~c~~~~~~--~~C~~C~~~I~~~ 107 (191)
=+..||..|..+.+. ..|+.|+..|...
T Consensus 34 CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 34 CLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp SCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred CCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 355667777655442 4788998888754
No 104
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=49.23 E-value=16 Score=21.97 Aligned_cols=42 Identities=17% Similarity=0.331 Sum_probs=27.6
Q ss_pred CCccccccccccccee-EeecCCCcccccCc--------cccccccccCCC
Q psy4072 4 LSLCVGCGGQIHDQYI-LRVAPDLEWHAACL--------RCAECHQFLDEN 45 (191)
Q Consensus 4 ~~~C~~C~~~I~~~~~-~~~~~~~~~H~~Cf--------~C~~C~~~l~~~ 45 (191)
...|.-|...+..... ....-+..||..|+ +|-.|+..|...
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 15 GLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 3568888887764332 22356778888887 377777777654
No 105
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.50 E-value=5.2 Score=23.43 Aligned_cols=39 Identities=18% Similarity=0.457 Sum_probs=21.5
Q ss_pred Ccccccccccccc-----eeEeecCCCcccccCc--------cccccccccC
Q psy4072 5 SLCVGCGGQIHDQ-----YILRVAPDLEWHAACL--------RCAECHQFLD 43 (191)
Q Consensus 5 ~~C~~C~~~I~~~-----~~~~~~~~~~~H~~Cf--------~C~~C~~~l~ 43 (191)
..|.-|...+... .++...-|..||..|+ .|-.|+.+|.
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 16 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 4577776665532 1121245667777665 4666666554
No 106
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=48.08 E-value=7.1 Score=23.40 Aligned_cols=27 Identities=19% Similarity=0.501 Sum_probs=20.3
Q ss_pred hhhhcCCCccCCCeEEEec---Cccccccc
Q psy4072 96 KCEKCNLNFKREDFVMRAK---NKIYHVQC 122 (191)
Q Consensus 96 ~C~~C~~~I~~~~~~~~~~---~~~~H~~C 122 (191)
.|..|++++.+++..|.-. ...||..|
T Consensus 10 ~C~~C~~p~~~~~~mI~CD~~C~~WfH~~C 39 (65)
T 2vpb_A 10 PCGICTNEVNDDQDAILCEASCQKWFHRIC 39 (65)
T ss_dssp BCTTTCSBCCTTSCEEEBTTTTCCEEEHHH
T ss_pred cCccCCCccCCCCCeEecccCccccCchhc
Confidence 7899999987766666655 56678876
No 107
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=47.25 E-value=22 Score=21.41 Aligned_cols=14 Identities=29% Similarity=0.672 Sum_probs=10.0
Q ss_pred CccccccccccCCC
Q psy4072 32 CLRCAECHQFLDEN 45 (191)
Q Consensus 32 Cf~C~~C~~~l~~~ 45 (191)
=+.|..|...+...
T Consensus 19 ~~~C~IC~~~~~~p 32 (85)
T 2ecw_A 19 EVTCPICLELLKEP 32 (85)
T ss_dssp TTSCTTTCSCCSSC
T ss_pred CCCCcCCChhhCcc
Confidence 36788887777665
No 108
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=47.03 E-value=5.9 Score=23.41 Aligned_cols=42 Identities=17% Similarity=0.424 Sum_probs=28.6
Q ss_pred CCcccccccccccc-----eeEeecCCCcccccCc--------cccccccccCCC
Q psy4072 4 LSLCVGCGGQIHDQ-----YILRVAPDLEWHAACL--------RCAECHQFLDEN 45 (191)
Q Consensus 4 ~~~C~~C~~~I~~~-----~~~~~~~~~~~H~~Cf--------~C~~C~~~l~~~ 45 (191)
...|.-|...+... ..+...-|..||..|+ +|-.|+.++...
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 45688888777543 1122356888888887 688888887654
No 109
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=47.02 E-value=12 Score=21.89 Aligned_cols=42 Identities=17% Similarity=0.428 Sum_probs=26.4
Q ss_pred CCcccccccccccc-eeEeecCCCcccccCc--------cccccccccCCC
Q psy4072 4 LSLCVGCGGQIHDQ-YILRVAPDLEWHAACL--------RCAECHQFLDEN 45 (191)
Q Consensus 4 ~~~C~~C~~~I~~~-~~~~~~~~~~~H~~Cf--------~C~~C~~~l~~~ 45 (191)
...|.-|...+... ......-|..||..|+ +|-.|+..|...
T Consensus 14 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 14 EEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp CCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 45688887777532 2332345777887776 477777776543
No 110
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=46.83 E-value=13 Score=21.99 Aligned_cols=28 Identities=32% Similarity=0.623 Sum_probs=19.0
Q ss_pred cccccCCCCCCCCCceeeeCCc--cCC-ccc
Q psy4072 123 FCCVVCGKQLVPGDEFALREDG--LFC-KDD 150 (191)
Q Consensus 123 f~C~~C~~~l~~~~~~~~~~~~--~~C-~~c 150 (191)
..|+.|+++|..|...+-+.+. +|| ..|
T Consensus 21 v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~C 51 (62)
T 2das_A 21 ITCANCKKPLQKGQTAYQRKGSAHLFCSTTC 51 (62)
T ss_dssp CBCTTTCCBCCTTSCCEECTTCCCEESSHHH
T ss_pred cChhhccchhhcCceeeeecCchhheechHH
Confidence 4588889999877766665444 666 444
No 111
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.74 E-value=12 Score=22.20 Aligned_cols=26 Identities=19% Similarity=0.598 Sum_probs=14.9
Q ss_pred Ceecchhhhhhhhh-----hhhhhcCCCccC
Q psy4072 81 GKTYCKRDYVRLFG-----TKCEKCNLNFKR 106 (191)
Q Consensus 81 ~~~~C~~c~~~~~~-----~~C~~C~~~I~~ 106 (191)
|..||..|..+... ..|+.|+..|..
T Consensus 39 gH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 39 GHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred CChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 44556666554432 267777777654
No 112
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.12 E-value=11 Score=23.44 Aligned_cols=29 Identities=21% Similarity=0.504 Sum_probs=17.9
Q ss_pred hhhhcCCCccCCCeEE-EecCccccccccc
Q psy4072 96 KCEKCNLNFKREDFVM-RAKNKIYHVQCFC 124 (191)
Q Consensus 96 ~C~~C~~~I~~~~~~~-~~~~~~~H~~Cf~ 124 (191)
.|..|++.-.+++.++ ..-+..||..|..
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~ 57 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLN 57 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSS
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccC
Confidence 5778887544444332 2235789999865
No 113
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=45.76 E-value=11 Score=22.06 Aligned_cols=42 Identities=12% Similarity=0.240 Sum_probs=29.5
Q ss_pred CCCcccccccccccceeEeecCCCcccccCc--------cccccccccCCC
Q psy4072 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACL--------RCAECHQFLDEN 45 (191)
Q Consensus 3 ~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf--------~C~~C~~~l~~~ 45 (191)
....|.-|...+....+. ..-|..||..|+ .|-.|+.++...
T Consensus 4 ~~~~C~IC~~~~~~~~~~-~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMA-LPCLHAFCYVCITRWIRQNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCSSCCSCCCSCEEE-TTTTEEESTTHHHHHHHHSCSTTTTCCCCCCE
T ss_pred CCCCCeeCCccccCCcEe-cCCCCeeHHHHHHHHHhCcCcCcCCChhhHhh
Confidence 345788998887764333 356778888886 488888887653
No 114
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=43.61 E-value=7.5 Score=26.18 Aligned_cols=29 Identities=21% Similarity=0.544 Sum_probs=19.1
Q ss_pred hhhhcCCCccCCCeEEEec----------Cccccccccc
Q psy4072 96 KCEKCNLNFKREDFVMRAK----------NKIYHVQCFC 124 (191)
Q Consensus 96 ~C~~C~~~I~~~~~~~~~~----------~~~~H~~Cf~ 124 (191)
.|..|+..|..++..|... ...+|..||.
T Consensus 22 ~Ck~Ck~kI~KgeLRiG~~v~~~~~dG~~~~W~H~~Cf~ 60 (114)
T 1v9x_A 22 SCKTCKSVINKENFRLGKLVQSTHFDGIMPMWNHASCIL 60 (114)
T ss_dssp BCSSSCCBCCSSSEEEEECCCCSSSSCCCCEEEEHHHHH
T ss_pred CchhhCCccCCCCEEEEEEecCcccCCCcceeECccccc
Confidence 6778889998776444321 2346788876
No 115
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.97 E-value=11 Score=23.12 Aligned_cols=42 Identities=24% Similarity=0.495 Sum_probs=26.5
Q ss_pred CCccccccccccc------------c-eeEeecCCCcccccCc--------cccccccccCCC
Q psy4072 4 LSLCVGCGGQIHD------------Q-YILRVAPDLEWHAACL--------RCAECHQFLDEN 45 (191)
Q Consensus 4 ~~~C~~C~~~I~~------------~-~~~~~~~~~~~H~~Cf--------~C~~C~~~l~~~ 45 (191)
...|+-|...+.+ . .++...-+..||..|+ +|-.|++++...
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 3457777777743 1 1222236888998887 488888777543
No 116
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.63 E-value=20 Score=21.61 Aligned_cols=26 Identities=15% Similarity=0.649 Sum_probs=15.1
Q ss_pred Ceecchhhhhhhh--------hhhhhhcCCCccC
Q psy4072 81 GKTYCKRDYVRLF--------GTKCEKCNLNFKR 106 (191)
Q Consensus 81 ~~~~C~~c~~~~~--------~~~C~~C~~~I~~ 106 (191)
|..||..|....+ ...|+.|+..+..
T Consensus 38 gH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 38 GHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp SCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 4455666654433 2367778777764
No 117
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=41.41 E-value=15 Score=24.23 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=16.2
Q ss_pred CeecchhhhhhhhhhhhhhcCCCccC
Q psy4072 81 GKTYCKRDYVRLFGTKCEKCNLNFKR 106 (191)
Q Consensus 81 ~~~~C~~c~~~~~~~~C~~C~~~I~~ 106 (191)
|..||..|........|+.|+.++..
T Consensus 42 gH~fC~~Ci~~~~~~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 42 EHIFCSNCVSDCIGTGCPVCYTPAWI 67 (117)
T ss_dssp SCCBCTTTGGGGTTTBCSSSCCBCSC
T ss_pred CCHHHHHHHHHHhcCCCcCCCCcCcc
Confidence 45556666555444578888877753
No 118
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=40.22 E-value=5.1 Score=29.81 Aligned_cols=31 Identities=29% Similarity=0.443 Sum_probs=24.6
Q ss_pred ccccccCCCCCCCCCceeeeCCccCCcccccc
Q psy4072 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEG 153 (191)
Q Consensus 122 Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~ 153 (191)
-..|..|+.... .......+++++|..|+..
T Consensus 172 ~~~C~~CGE~~~-~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 172 KVRCDVCGEYTY-EADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EEECTTTCCEEE-GGGCEEETTEEECHHHHHC
T ss_pred ceECCCCCCchh-hcceeeeCCcEEChhhhcc
Confidence 457999998886 4456677999999999865
No 119
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=39.78 E-value=28 Score=20.67 Aligned_cols=26 Identities=23% Similarity=0.498 Sum_probs=16.0
Q ss_pred Ceecchhhhhhhhh----hhhhhcCCCccC
Q psy4072 81 GKTYCKRDYVRLFG----TKCEKCNLNFKR 106 (191)
Q Consensus 81 ~~~~C~~c~~~~~~----~~C~~C~~~I~~ 106 (191)
|..||..|..+.+. ..|+.|+..+..
T Consensus 35 gH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 35 GNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 55666666555443 368888876543
No 120
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.99 E-value=12 Score=22.10 Aligned_cols=25 Identities=16% Similarity=0.174 Sum_probs=10.6
Q ss_pred cccccccccccceeEeecCCCcccccC
Q psy4072 6 LCVGCGGQIHDQYILRVAPDLEWHAAC 32 (191)
Q Consensus 6 ~C~~C~~~I~~~~~~~~~~~~~~H~~C 32 (191)
.|.-|...+.....+ .-|..||..|
T Consensus 17 ~C~IC~~~~~~~~~~--~CgH~fC~~C 41 (71)
T 2d8t_A 17 ECAICLQTCVHPVSL--PCKHVFCYLC 41 (71)
T ss_dssp BCSSSSSBCSSEEEE--TTTEEEEHHH
T ss_pred CCccCCcccCCCEEc--cCCCHHHHHH
Confidence 355555444332222 3344444444
No 121
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=38.81 E-value=17 Score=25.60 Aligned_cols=30 Identities=23% Similarity=0.432 Sum_probs=18.6
Q ss_pred CccccccccccCCCceEEeeCCeecccchhhc
Q psy4072 32 CLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63 (191)
Q Consensus 32 Cf~C~~C~~~l~~~~~~~~~~g~~yc~~c~~~ 63 (191)
=|.|..|...+... +...-|..||..|...
T Consensus 18 ~~~C~IC~~~~~~p--v~~~CgH~fC~~Ci~~ 47 (170)
T 3hcs_A 18 KYECPICLMALREA--VQTPCGHRFCKACIIK 47 (170)
T ss_dssp GGBCTTTCSBCSSE--EECTTSCEEEHHHHHH
T ss_pred CCCCCCCChhhcCc--EECCCCCHHHHHHHHH
Confidence 37888898888765 3344555555555543
No 122
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=37.89 E-value=36 Score=19.55 Aligned_cols=28 Identities=21% Similarity=0.451 Sum_probs=14.3
Q ss_pred CCcccccccccccceeEeecCCCcccccCc
Q psy4072 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACL 33 (191)
Q Consensus 4 ~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf 33 (191)
...|..|++. +..+.-..-++.||..|+
T Consensus 5 ~~~C~vC~~~--g~ll~Cd~C~~~fH~~Cl 32 (60)
T 2puy_A 5 EDFCSVCRKS--GQLLMCDTCSRVYHLDCL 32 (60)
T ss_dssp CSSCTTTCCC--SSCEECSSSSCEECGGGS
T ss_pred CCCCcCCCCC--CcEEEcCCCCcCEECCcC
Confidence 3467777763 332322233456666653
No 123
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=37.30 E-value=23 Score=23.26 Aligned_cols=28 Identities=14% Similarity=0.310 Sum_probs=20.3
Q ss_pred Ceecchhhhhhhh---hhhhhhcCCCccCCC
Q psy4072 81 GKTYCKRDYVRLF---GTKCEKCNLNFKRED 108 (191)
Q Consensus 81 ~~~~C~~c~~~~~---~~~C~~C~~~I~~~~ 108 (191)
..++|.+|+.... ...|..|..+|..-|
T Consensus 21 kHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 21 KHVFCYDCAILHEKKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp CCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred cccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence 4588999986532 247999999997433
No 124
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=37.06 E-value=13 Score=22.58 Aligned_cols=28 Identities=14% Similarity=0.447 Sum_probs=17.3
Q ss_pred hhhhcCCCccCCCeEEEe--cCccccccccc
Q psy4072 96 KCEKCNLNFKREDFVMRA--KNKIYHVQCFC 124 (191)
Q Consensus 96 ~C~~C~~~I~~~~~~~~~--~~~~~H~~Cf~ 124 (191)
.|..|++.-.+++ +|.- =++.||..|..
T Consensus 20 ~C~~C~~~~~~~~-ll~CD~C~~~yH~~Cl~ 49 (70)
T 3asl_A 20 ACHLCGGRQDPDK-QLMCDECDMAFHIYCLD 49 (70)
T ss_dssp SBTTTCCCSCGGG-EEECTTTCCEEEGGGSS
T ss_pred CCcCCCCcCCCCC-EEEcCCCCCceecccCC
Confidence 4777776544433 4432 35789999875
No 125
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=36.42 E-value=6 Score=26.22 Aligned_cols=30 Identities=27% Similarity=0.715 Sum_probs=18.9
Q ss_pred hhhhhcCCCccCCCeEEEec----------Cccccccccc
Q psy4072 95 TKCEKCNLNFKREDFVMRAK----------NKIYHVQCFC 124 (191)
Q Consensus 95 ~~C~~C~~~I~~~~~~~~~~----------~~~~H~~Cf~ 124 (191)
..|..|+..|..++..|... ...+|..||.
T Consensus 26 a~Ck~C~~kI~KgelRig~~v~~~~~~g~~~~W~H~~Cf~ 65 (106)
T 2dmj_A 26 ASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFW 65 (106)
T ss_dssp CBCSSSCCBCCTTCEEEEEEEEETTTTEEEEEEEETTHHH
T ss_pred CcchhhCCccCCCCEEEEEEecCCCCCCCcCEeECcCccc
Confidence 37888999998766333211 1346778876
No 126
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.41 E-value=34 Score=19.39 Aligned_cols=28 Identities=21% Similarity=0.451 Sum_probs=13.5
Q ss_pred CCcccccccccccceeEeecCCCcccccCc
Q psy4072 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACL 33 (191)
Q Consensus 4 ~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf 33 (191)
...|..|++. +..+.-..-.+.||..|+
T Consensus 9 ~~~C~vC~~~--g~ll~Cd~C~~~~H~~Cl 36 (56)
T 2yql_A 9 EDFCSVCRKS--GQLLMCDTCSRVYHLDCL 36 (56)
T ss_dssp CCSCSSSCCS--SCCEECSSSSCEECSSSS
T ss_pred CCCCccCCCC--CeEEEcCCCCcceECccC
Confidence 3457777653 222222233456666653
No 127
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=36.29 E-value=5.3 Score=25.97 Aligned_cols=10 Identities=30% Similarity=0.720 Sum_probs=5.8
Q ss_pred ccccCCCCCC
Q psy4072 124 CCVVCGKQLV 133 (191)
Q Consensus 124 ~C~~C~~~l~ 133 (191)
+|..|+.+|.
T Consensus 63 rCpIC~~pLP 72 (99)
T 2ko5_A 63 RCPICKMPLP 72 (99)
T ss_dssp EETTTTEECC
T ss_pred CCcccCCcCC
Confidence 3556666665
No 128
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.87 E-value=19 Score=21.37 Aligned_cols=40 Identities=20% Similarity=0.369 Sum_probs=22.7
Q ss_pred Cccccccccccccee-EeecCCCcccccCc--------cccccccccCC
Q psy4072 5 SLCVGCGGQIHDQYI-LRVAPDLEWHAACL--------RCAECHQFLDE 44 (191)
Q Consensus 5 ~~C~~C~~~I~~~~~-~~~~~~~~~H~~Cf--------~C~~C~~~l~~ 44 (191)
..|.-|...+..... ....-+..||..|+ +|-.|+.+|..
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 457777776654322 22245666776665 46666666644
No 129
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.83 E-value=25 Score=21.69 Aligned_cols=42 Identities=24% Similarity=0.275 Sum_probs=27.4
Q ss_pred CCcccccccccccceeEeecC-----CCcccccCc----------cccccccccCCC
Q psy4072 4 LSLCVGCGGQIHDQYILRVAP-----DLEWHAACL----------RCAECHQFLDEN 45 (191)
Q Consensus 4 ~~~C~~C~~~I~~~~~~~~~~-----~~~~H~~Cf----------~C~~C~~~l~~~ 45 (191)
...|.-|.........+...- ...+|..|+ +|..|+..+...
T Consensus 15 ~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 15 QDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp SCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 456888987765433332222 278999887 588888877554
No 130
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=35.33 E-value=21 Score=22.17 Aligned_cols=24 Identities=25% Similarity=0.566 Sum_probs=15.7
Q ss_pred Ceecchhhhhhhhh----hhhhhcCCCc
Q psy4072 81 GKTYCKRDYVRLFG----TKCEKCNLNF 104 (191)
Q Consensus 81 ~~~~C~~c~~~~~~----~~C~~C~~~I 104 (191)
|..||..|....+. ..|+.|+..+
T Consensus 33 gH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 33 GNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 56677777655442 3688888876
No 131
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.11 E-value=17 Score=22.07 Aligned_cols=36 Identities=19% Similarity=0.432 Sum_probs=19.5
Q ss_pred cccccccccccceeEeecCCCcccccCc--------cccccccccC
Q psy4072 6 LCVGCGGQIHDQYILRVAPDLEWHAACL--------RCAECHQFLD 43 (191)
Q Consensus 6 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf--------~C~~C~~~l~ 43 (191)
.|.-|...+....+ ..-|..||..|+ .|-.|+.++.
T Consensus 17 ~C~IC~~~~~~p~~--~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 17 RCFICRQAFQNPVV--TKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp BCSSSCSBCCSEEE--CTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCcCCCchhcCeeE--ccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 46666665544332 244556666664 3666666554
No 132
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=34.78 E-value=22 Score=23.24 Aligned_cols=29 Identities=14% Similarity=0.346 Sum_probs=18.7
Q ss_pred eCCeecchhhhhhhhh---hhhhhcCCCccCC
Q psy4072 79 RDGKTYCKRDYVRLFG---TKCEKCNLNFKRE 107 (191)
Q Consensus 79 ~~~~~~C~~c~~~~~~---~~C~~C~~~I~~~ 107 (191)
.=|..||..|..+... ..|+.|+.++...
T Consensus 40 ~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 40 SCKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 3456667777655443 3788888887643
No 133
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=34.47 E-value=8.1 Score=21.07 Aligned_cols=15 Identities=27% Similarity=0.594 Sum_probs=10.6
Q ss_pred Cccccccccccccee
Q psy4072 5 SLCVGCGGQIHDQYI 19 (191)
Q Consensus 5 ~~C~~C~~~I~~~~~ 19 (191)
++|.+|++||.-..+
T Consensus 18 RvC~~CgkPi~lsAI 32 (44)
T 2lo3_A 18 RVCEKCGKPLALTAI 32 (44)
T ss_dssp EECTTTCCEEETTTH
T ss_pred hhhcccCCcchHHHH
Confidence 568888888865444
No 134
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=34.41 E-value=14 Score=25.28 Aligned_cols=37 Identities=16% Similarity=0.485 Sum_probs=22.0
Q ss_pred cccccccccccceeEeecCCCcccccCc--------cccccccccCC
Q psy4072 6 LCVGCGGQIHDQYILRVAPDLEWHAACL--------RCAECHQFLDE 44 (191)
Q Consensus 6 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf--------~C~~C~~~l~~ 44 (191)
.|.-|...+....++ .-|..||..|+ .|..|++++..
T Consensus 55 ~C~iC~~~~~~~~~~--~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 55 QCIICSEYFIEAVTL--NCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp BCTTTCSBCSSEEEE--TTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred CCcccCcccCCceEC--CCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 477776666554332 45667776664 36666666644
No 135
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=34.19 E-value=45 Score=19.61 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=14.4
Q ss_pred CCcccccccccccceeEeecCCCcccccCc
Q psy4072 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACL 33 (191)
Q Consensus 4 ~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf 33 (191)
...|..|+.. +..+.-..-.+.||..|+
T Consensus 8 ~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl 35 (66)
T 1xwh_A 8 EDECAVCRDG--GELICCDGCPRAFHLACL 35 (66)
T ss_dssp CCSBSSSSCC--SSCEECSSCCCEECTTTS
T ss_pred CCCCccCCCC--CCEEEcCCCChhhccccc
Confidence 4467777753 322222233456676664
No 136
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=33.79 E-value=25 Score=20.17 Aligned_cols=29 Identities=24% Similarity=0.560 Sum_probs=19.5
Q ss_pred CCeecchhhhhhhhh---hhhhhcCCCccCCC
Q psy4072 80 DGKTYCKRDYVRLFG---TKCEKCNLNFKRED 108 (191)
Q Consensus 80 ~~~~~C~~c~~~~~~---~~C~~C~~~I~~~~ 108 (191)
=|..+|..|..+.+. ..|+.|+.++...+
T Consensus 26 CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 26 CGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 356677777665532 36888988887554
No 137
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=33.28 E-value=20 Score=22.48 Aligned_cols=28 Identities=14% Similarity=0.301 Sum_probs=12.0
Q ss_pred cccccccccccce-eEeecCCCcccccCc
Q psy4072 6 LCVGCGGQIHDQY-ILRVAPDLEWHAACL 33 (191)
Q Consensus 6 ~C~~C~~~I~~~~-~~~~~~~~~~H~~Cf 33 (191)
.|.-|...+.... .....-|..||..|+
T Consensus 42 ~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci 70 (91)
T 2l0b_A 42 CCPICCSEYVKGDVATELPCHHYFHKPCV 70 (91)
T ss_dssp EETTTTEECCTTCEEEEETTTEEEEHHHH
T ss_pred CCcccChhhcCCCcEEecCCCChHHHHHH
Confidence 3555555544322 211234555555554
No 138
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=33.16 E-value=61 Score=18.70 Aligned_cols=28 Identities=18% Similarity=0.449 Sum_probs=14.4
Q ss_pred CCcccccccccccceeEeecCCCcccccCc
Q psy4072 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACL 33 (191)
Q Consensus 4 ~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf 33 (191)
...|..|+.. +..+.-..-.+.||..|+
T Consensus 9 ~~~C~vC~~~--g~ll~Cd~C~~~fH~~Cl 36 (61)
T 1mm2_A 9 MEFCRVCKDG--GELLCCDTCPSSYHIHCL 36 (61)
T ss_dssp CSSCTTTCCC--SSCBCCSSSCCCBCSSSS
T ss_pred CCcCCCCCCC--CCEEEcCCCCHHHccccc
Confidence 3457777752 222222234556777764
No 139
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=33.14 E-value=14 Score=23.19 Aligned_cols=30 Identities=23% Similarity=0.682 Sum_probs=14.8
Q ss_pred cccccccccccceeEeecCCCcccccCcccc
Q psy4072 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCA 36 (191)
Q Consensus 6 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~ 36 (191)
.|.-|.+.+.+.-.+. -....-|+-||.|+
T Consensus 17 ~CtlC~erLEdtHFVQ-CPsv~~HkFCFpCs 46 (93)
T 2cs3_A 17 CCTICHERLEDTHFVQ-CPSVPSHKFCFPCS 46 (93)
T ss_dssp CCSSSCSCCSSTTSEE-CSSCSSCEECHHHH
T ss_pred EeecchhhhccCceee-CCCccCCeeecccc
Confidence 3555555555544442 33445555555554
No 140
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=32.88 E-value=14 Score=24.94 Aligned_cols=29 Identities=21% Similarity=0.592 Sum_probs=18.1
Q ss_pred hhhhcCCCccCCCeEEEe---------c---Cccccccccc
Q psy4072 96 KCEKCNLNFKREDFVMRA---------K---NKIYHVQCFC 124 (191)
Q Consensus 96 ~C~~C~~~I~~~~~~~~~---------~---~~~~H~~Cf~ 124 (191)
.|..|+..|.-++..|.. . ...+|..||.
T Consensus 17 ~Ck~C~~kI~KgeLRiG~~v~~~~~~~~g~~~~W~H~~Cf~ 57 (117)
T 1uw0_A 17 GCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMF 57 (117)
T ss_dssp ECTTSSCEECTTCEEEEEEEECTTCSSCCEECCBCCHHHHH
T ss_pred cchhhCcccCCCCeEEEEEeccccccCCCCCCeeECcccch
Confidence 677888888876633321 1 1245788876
No 141
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=32.85 E-value=7.4 Score=26.33 Aligned_cols=31 Identities=26% Similarity=0.697 Sum_probs=19.5
Q ss_pred hhhhhcCCCccCCCeEEEe-------cC---cccccccccc
Q psy4072 95 TKCEKCNLNFKREDFVMRA-------KN---KIYHVQCFCC 125 (191)
Q Consensus 95 ~~C~~C~~~I~~~~~~~~~-------~~---~~~H~~Cf~C 125 (191)
..|..|.+.|..++..+.. .+ ..||..||.=
T Consensus 39 A~Ck~C~~kI~KgeLRiG~~v~~~~~~G~~~~WyH~~Cf~~ 79 (116)
T 3od8_A 39 ASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWK 79 (116)
T ss_dssp CBCTTTCCBCCTTSEEEEEEEECSSSSSEEEEEEEHHHHHH
T ss_pred ccCcccCCccCCCCEEEEEEeccCCcCCCCCeeECCccChh
Confidence 4788899999876643321 11 2467888763
No 142
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=32.30 E-value=14 Score=22.33 Aligned_cols=12 Identities=42% Similarity=0.949 Sum_probs=9.8
Q ss_pred CCeecccchhhc
Q psy4072 52 DGKTYCKRDYVS 63 (191)
Q Consensus 52 ~g~~yc~~c~~~ 63 (191)
+|.+||.+||..
T Consensus 26 dgDLYC~rC~rE 37 (67)
T 2d8v_A 26 DGDLYCARCFRE 37 (67)
T ss_dssp TSEEECSSHHHH
T ss_pred CCceehHHHHHH
Confidence 677899999875
No 143
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=31.61 E-value=24 Score=22.28 Aligned_cols=27 Identities=19% Similarity=0.549 Sum_probs=16.4
Q ss_pred CCeecchhhhhhhhh--hhhhhcCCCccC
Q psy4072 80 DGKTYCKRDYVRLFG--TKCEKCNLNFKR 106 (191)
Q Consensus 80 ~~~~~C~~c~~~~~~--~~C~~C~~~I~~ 106 (191)
=|..||..|..+... ..|+.|+..+..
T Consensus 41 CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 41 CSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp TCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 345566666554442 368888877764
No 144
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=31.17 E-value=22 Score=22.91 Aligned_cols=38 Identities=18% Similarity=0.384 Sum_probs=22.3
Q ss_pred cccccccccccceeEeecCCCcccccCc-----------cccccccccCCC
Q psy4072 6 LCVGCGGQIHDQYILRVAPDLEWHAACL-----------RCAECHQFLDEN 45 (191)
Q Consensus 6 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf-----------~C~~C~~~l~~~ 45 (191)
.|.-|...+.....+ .-|..|+..|+ .|-.|+.++...
T Consensus 23 ~C~IC~~~~~~p~~~--~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 23 ECPICLELIKEPVST--KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp SCSSSCCCCSSCCBC--TTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCcccChhhcCeEEC--CCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 577777666554332 45666666664 466666665543
No 145
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=31.03 E-value=45 Score=21.38 Aligned_cols=16 Identities=6% Similarity=0.088 Sum_probs=12.7
Q ss_pred ccCccccccccccCCC
Q psy4072 30 AACLRCAECHQFLDEN 45 (191)
Q Consensus 30 ~~Cf~C~~C~~~l~~~ 45 (191)
+.-|.|..|...+.+.
T Consensus 27 p~~~~CpI~~~~m~dP 42 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDP 42 (100)
T ss_dssp STTTBCTTTCSBCSSE
T ss_pred cHhhCCcCccCcccCC
Confidence 5678899888888776
No 146
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=30.90 E-value=17 Score=24.20 Aligned_cols=37 Identities=19% Similarity=0.441 Sum_probs=18.9
Q ss_pred cccccccccccceeEeecCCCcccccCc---------cccccccccCC
Q psy4072 6 LCVGCGGQIHDQYILRVAPDLEWHAACL---------RCAECHQFLDE 44 (191)
Q Consensus 6 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf---------~C~~C~~~l~~ 44 (191)
.|.-|...+.....+ .-|..|+..|+ .|-.|+.++..
T Consensus 54 ~C~IC~~~~~~p~~~--~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 54 QCICCQELVFRPITT--VCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp BCTTTSSBCSSEEEC--TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCcCChHHcCcEEe--eCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 355565555543222 44555555554 45555555544
No 147
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=30.82 E-value=28 Score=22.18 Aligned_cols=26 Identities=19% Similarity=0.430 Sum_probs=13.0
Q ss_pred Ceecchhhhhhhhh---hhhhhcCCCccC
Q psy4072 81 GKTYCKRDYVRLFG---TKCEKCNLNFKR 106 (191)
Q Consensus 81 ~~~~C~~c~~~~~~---~~C~~C~~~I~~ 106 (191)
|..||..|..+.+. ..|+.|..++..
T Consensus 42 gH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 42 SKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp CCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 44455555443332 256666666543
No 148
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=30.67 E-value=6.1 Score=25.82 Aligned_cols=31 Identities=16% Similarity=0.432 Sum_probs=18.5
Q ss_pred hhhhhcCCCccCCCeEEEecCccccccccccccCCCCCC
Q psy4072 95 TKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLV 133 (191)
Q Consensus 95 ~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~ 133 (191)
..|+.|++++. ++.|-|.. =|.|..|+..++
T Consensus 62 a~CPdC~q~Le----vLkACGAv----dYFC~~chgLiS 92 (101)
T 2jne_A 62 ALCPDCHQPLQ----VLKACGAV----DYFCQHGHGLIS 92 (101)
T ss_dssp EECTTTCSBCE----EEEETTEE----EEEETTTTEEEC
T ss_pred ccCcchhhHHH----HHHHhcCc----chhhccCCceee
Confidence 36777887773 45554421 155777766665
No 149
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.56 E-value=12 Score=21.99 Aligned_cols=38 Identities=16% Similarity=0.445 Sum_probs=20.8
Q ss_pred CcccccccccccceeEeecCCCcccccCc--------cccccccccCCC
Q psy4072 5 SLCVGCGGQIHDQYILRVAPDLEWHAACL--------RCAECHQFLDEN 45 (191)
Q Consensus 5 ~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf--------~C~~C~~~l~~~ 45 (191)
..|.-|...+.. ++ ..-|..||..|+ .|-.|+.++...
T Consensus 16 ~~C~IC~~~~~~--~~-~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 16 EECCICMDGRAD--LI-LPCAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCSSSCCSCCS--EE-ETTTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCeeCCcCccC--cc-cCCCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 456666666555 22 245666666664 355565555443
No 150
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=29.12 E-value=61 Score=17.99 Aligned_cols=39 Identities=18% Similarity=0.359 Sum_probs=25.2
Q ss_pred CCcccccccccccceeEeecCCCcccccCc-----cccccccccCC
Q psy4072 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACL-----RCAECHQFLDE 44 (191)
Q Consensus 4 ~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf-----~C~~C~~~l~~ 44 (191)
...|.-|...+....++ .-|..|+..|+ .|-.|++.+..
T Consensus 6 ~~~C~IC~~~~~~p~~l--~CgH~fC~~Ci~~~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 6 FLRCQQCQAEAKCPKLL--PCLHTLCSGCLEASGMQCPICQAPWPL 49 (56)
T ss_dssp CSSCSSSCSSCBCCSCS--TTSCCSBTTTCSSSSSSCSSCCSSSSC
T ss_pred CCCceEeCCccCCeEEc--CCCCcccHHHHccCCCCCCcCCcEeec
Confidence 45688887777654333 45777777774 46777666654
No 151
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.96 E-value=37 Score=20.62 Aligned_cols=11 Identities=18% Similarity=0.401 Sum_probs=5.8
Q ss_pred ccccccccccc
Q psy4072 6 LCVGCGGQIHD 16 (191)
Q Consensus 6 ~C~~C~~~I~~ 16 (191)
.|.-|...+..
T Consensus 17 ~C~IC~~~~~~ 27 (88)
T 2ct2_A 17 ECPICMESFTE 27 (88)
T ss_dssp BCTTTCCBCCT
T ss_pred CCccCCccccc
Confidence 45555555544
No 152
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=28.30 E-value=33 Score=22.07 Aligned_cols=27 Identities=22% Similarity=0.568 Sum_probs=16.4
Q ss_pred CCeecchhhhhhhhh--hhhhhcCCCccC
Q psy4072 80 DGKTYCKRDYVRLFG--TKCEKCNLNFKR 106 (191)
Q Consensus 80 ~~~~~C~~c~~~~~~--~~C~~C~~~I~~ 106 (191)
=|..||..|...... ..|+.|+..+..
T Consensus 34 CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 34 CLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp TCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 355566666554432 468888877764
No 153
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=27.92 E-value=21 Score=23.31 Aligned_cols=29 Identities=24% Similarity=0.417 Sum_probs=15.9
Q ss_pred CccccccccccCCCceEEeeCCeecccchhh
Q psy4072 32 CLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62 (191)
Q Consensus 32 Cf~C~~C~~~l~~~~~~~~~~g~~yc~~c~~ 62 (191)
-+.|..|...+... ....=|..||..|..
T Consensus 15 ~~~C~iC~~~~~~p--~~~~CgH~fC~~Ci~ 43 (115)
T 3l11_A 15 ECQCGICMEILVEP--VTLPCNHTLCKPCFQ 43 (115)
T ss_dssp HHBCTTTCSBCSSC--EECTTSCEECHHHHC
T ss_pred CCCCccCCcccCce--eEcCCCCHHhHHHHH
Confidence 36788887777654 333344444444443
No 154
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=27.49 E-value=28 Score=22.82 Aligned_cols=39 Identities=18% Similarity=0.338 Sum_probs=24.7
Q ss_pred CCcccccccccccc----------------eeEeecCCCcccccCc--------ccccccccc
Q psy4072 4 LSLCVGCGGQIHDQ----------------YILRVAPDLEWHAACL--------RCAECHQFL 42 (191)
Q Consensus 4 ~~~C~~C~~~I~~~----------------~~~~~~~~~~~H~~Cf--------~C~~C~~~l 42 (191)
...|+-|...+.+. .++...-+..||..|+ .|-.|+..+
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 34688887777643 1222356778888886 577776654
No 155
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=27.45 E-value=69 Score=17.83 Aligned_cols=12 Identities=25% Similarity=0.595 Sum_probs=7.9
Q ss_pred cccccCCCCCCC
Q psy4072 123 FCCVVCGKQLVP 134 (191)
Q Consensus 123 f~C~~C~~~l~~ 134 (191)
++|-.|++.++.
T Consensus 4 Y~C~rCg~~fs~ 15 (48)
T 4ayb_P 4 YRCGKCWKTFTD 15 (48)
T ss_dssp -CCCCTTTTCCC
T ss_pred EEeeccCCCccH
Confidence 467777777763
No 156
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=27.42 E-value=45 Score=20.57 Aligned_cols=48 Identities=6% Similarity=-0.022 Sum_probs=30.8
Q ss_pred ccCccccccccccCCCceEEeeCCeecccchhhcccccceeccccceeeeCCeecchhhhhhhhh--hhhhhcCCCccCC
Q psy4072 30 AACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFG--TKCEKCNLNFKRE 107 (191)
Q Consensus 30 ~~Cf~C~~C~~~l~~~~~~~~~~g~~yc~~c~~~~~~~~~~~~~c~~~~~~~~~~C~~c~~~~~~--~~C~~C~~~I~~~ 107 (191)
+.-|.|..|...+... +.. ..|..||..|..+-.. ..|+.|+.++...
T Consensus 12 p~~~~CpI~~~~m~dP--V~~----------------------------~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDP--VRL----------------------------PSGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp CTTTBCTTTCSBCSSE--EEC----------------------------TTSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred chheECcccCchhcCC--eEC----------------------------CCCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 4568899998888775 333 4566666666444332 4677887776543
No 157
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=27.33 E-value=47 Score=24.97 Aligned_cols=48 Identities=17% Similarity=0.225 Sum_probs=31.2
Q ss_pred ccCccccccccccCCCceEEeeCCeecccchhhcccccceeccccceeeeCCeecchhhhhhhhh---hhhhhcCCCccC
Q psy4072 30 AACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFG---TKCEKCNLNFKR 106 (191)
Q Consensus 30 ~~Cf~C~~C~~~l~~~~~~~~~~g~~yc~~c~~~~~~~~~~~~~c~~~~~~~~~~C~~c~~~~~~---~~C~~C~~~I~~ 106 (191)
+.-|.|..|...+... +.. ..|..||..|..+-.. ..|+.|+.++..
T Consensus 206 ~~~~~c~i~~~~~~dP--v~~----------------------------~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMREP--CIT----------------------------PSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCSSE--EEC----------------------------SSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhcCC--eEC----------------------------CCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 4568899998888776 333 4566666666544332 248888888764
Q ss_pred C
Q psy4072 107 E 107 (191)
Q Consensus 107 ~ 107 (191)
.
T Consensus 256 ~ 256 (281)
T 2c2l_A 256 E 256 (281)
T ss_dssp G
T ss_pred h
Confidence 4
No 158
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=26.31 E-value=54 Score=20.92 Aligned_cols=16 Identities=0% Similarity=-0.129 Sum_probs=12.8
Q ss_pred ccCccccccccccCCC
Q psy4072 30 AACLRCAECHQFLDEN 45 (191)
Q Consensus 30 ~~Cf~C~~C~~~l~~~ 45 (191)
+.-|.|..|...+.+.
T Consensus 20 p~~~~CpI~~~~m~dP 35 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDP 35 (98)
T ss_dssp CTTTBCTTTCSBCSSE
T ss_pred cHhcCCcCccccccCC
Confidence 5668899998888776
No 159
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=26.29 E-value=35 Score=22.32 Aligned_cols=51 Identities=12% Similarity=0.284 Sum_probs=30.1
Q ss_pred hhhhcCCCccCCCeEEEec---CccccccccccccCCCCCCCCCcee----eeCCccCCccccccc
Q psy4072 96 KCEKCNLNFKREDFVMRAK---NKIYHVQCFCCVVCGKQLVPGDEFA----LREDGLFCKDDHEGM 154 (191)
Q Consensus 96 ~C~~C~~~I~~~~~~~~~~---~~~~H~~Cf~C~~C~~~l~~~~~~~----~~~~~~~C~~c~~~~ 154 (191)
.|..|+++..+.+..|... ...||..|- .|. ...+. ..+...+|..|-.+.
T Consensus 5 ~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CV-------glt-~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 5 PCGACRSEVNDDQDAILCEASCQKWFHRECT-------GMT-ESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp BCTTTCSBCCTTSCEEECTTTTCCEEEGGGT-------TCC-HHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCccCCCCCEEEecCCcccccccccC-------CcC-HHHHHhhccCCCCCEECccccCcC
Confidence 6889999876554556554 566888773 232 11111 123457899996543
No 160
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=26.12 E-value=20 Score=24.76 Aligned_cols=14 Identities=21% Similarity=0.565 Sum_probs=10.4
Q ss_pred CccccccccccCCC
Q psy4072 32 CLRCAECHQFLDEN 45 (191)
Q Consensus 32 Cf~C~~C~~~l~~~ 45 (191)
=|.|..|...+...
T Consensus 31 ~~~C~IC~~~~~~p 44 (141)
T 3knv_A 31 KYLCSACRNVLRRP 44 (141)
T ss_dssp GGBCTTTCSBCSSE
T ss_pred CcCCCCCChhhcCc
Confidence 46788888877665
No 161
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=25.03 E-value=35 Score=23.84 Aligned_cols=26 Identities=12% Similarity=0.433 Sum_probs=17.1
Q ss_pred Ceecchhhhhhhhh---hhhhhcCCCccC
Q psy4072 81 GKTYCKRDYVRLFG---TKCEKCNLNFKR 106 (191)
Q Consensus 81 ~~~~C~~c~~~~~~---~~C~~C~~~I~~ 106 (191)
|..||..|..+.+. ..|+.|+.+|..
T Consensus 74 gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 74 LHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp CCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 55667777655443 368888888753
No 162
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=24.60 E-value=27 Score=24.34 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=11.6
Q ss_pred cccccccccccceeEeecCCCcccccC
Q psy4072 6 LCVGCGGQIHDQYILRVAPDLEWHAAC 32 (191)
Q Consensus 6 ~C~~C~~~I~~~~~~~~~~~~~~H~~C 32 (191)
.|.-|...+....++ .-|..|+..|
T Consensus 80 ~C~IC~~~~~~pv~~--~CgH~fC~~C 104 (150)
T 1z6u_A 80 MCVCCQELVYQPVTT--ECFHNVCKDC 104 (150)
T ss_dssp BCTTTSSBCSSEEEC--TTSCEEEHHH
T ss_pred EeecCChhhcCCEEc--CCCCchhHHH
Confidence 355555544433222 3455555555
No 163
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=22.62 E-value=28 Score=22.89 Aligned_cols=29 Identities=24% Similarity=0.479 Sum_probs=15.8
Q ss_pred ccccccccccCCCceEEeeCCeecccchhhc
Q psy4072 33 LRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63 (191)
Q Consensus 33 f~C~~C~~~l~~~~~~~~~~g~~yc~~c~~~ 63 (191)
+.|..|...+... +...-|..||..|...
T Consensus 19 ~~C~IC~~~~~~p--~~~~CgH~fC~~Ci~~ 47 (118)
T 3hct_A 19 YECPICLMALREA--VQTPCGHRFCKACIIK 47 (118)
T ss_dssp GBCTTTCSBCSSE--EECTTSCEEEHHHHHH
T ss_pred CCCCcCChhhcCe--EECCcCChhhHHHHHH
Confidence 4556665555543 3334566666666543
No 164
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=22.36 E-value=46 Score=19.27 Aligned_cols=9 Identities=33% Similarity=0.571 Sum_probs=4.4
Q ss_pred CCeecchhh
Q psy4072 80 DGKTYCKRD 88 (191)
Q Consensus 80 ~~~~~C~~c 88 (191)
.+.-+|..|
T Consensus 47 ~g~W~C~~C 55 (61)
T 2l5u_A 47 EGKWSCPHC 55 (61)
T ss_dssp CSSCCCTTG
T ss_pred CCceECccc
Confidence 344455554
No 165
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=22.27 E-value=36 Score=20.19 Aligned_cols=11 Identities=18% Similarity=0.419 Sum_probs=5.9
Q ss_pred ccccccccccc
Q psy4072 6 LCVGCGGQIHD 16 (191)
Q Consensus 6 ~C~~C~~~I~~ 16 (191)
.|.-|...+..
T Consensus 14 ~C~IC~~~~~~ 24 (79)
T 2egp_A 14 TCPICLELLTE 24 (79)
T ss_dssp EETTTTEECSS
T ss_pred CCcCCCcccCC
Confidence 45666555544
No 166
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=22.12 E-value=51 Score=21.09 Aligned_cols=24 Identities=21% Similarity=0.530 Sum_probs=15.7
Q ss_pred Ceecchhhhhhhhh---hhhhhcCCCc
Q psy4072 81 GKTYCKRDYVRLFG---TKCEKCNLNF 104 (191)
Q Consensus 81 ~~~~C~~c~~~~~~---~~C~~C~~~I 104 (191)
+.|.|..||.-... ..|++|+.+.
T Consensus 42 ~FPvCrpCyEYErkeG~q~CpqCktrY 68 (93)
T 1weo_A 42 GFPACRPCYEYERREGTQNCPQCKTRY 68 (93)
T ss_dssp CCCCCHHHHHHHHHTSCSSCTTTCCCC
T ss_pred CChhhHHHHHHHHhccCccccccCCcc
Confidence 45789988764433 3677777644
No 167
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=21.52 E-value=51 Score=19.97 Aligned_cols=32 Identities=28% Similarity=0.530 Sum_probs=19.0
Q ss_pred cccccCCCCCCCCCceeeeCCccCCccccc-cccCCCC
Q psy4072 123 FCCVVCGKQLVPGDEFALREDGLFCKDDHE-GMDKSSN 159 (191)
Q Consensus 123 f~C~~C~~~l~~~~~~~~~~~~~~C~~c~~-~~~~~~~ 159 (191)
+.|..|+..+... ..+.+.|+.|-. .++..++
T Consensus 29 Y~C~~CG~~~e~~-----~~d~irCp~CG~RILyK~R~ 61 (70)
T 1twf_L 29 YICAECSSKLSLS-----RTDAVRCKDCGHRILLKART 61 (70)
T ss_dssp EECSSSCCEECCC-----TTSTTCCSSSCCCCCBCCCC
T ss_pred EECCCCCCcceeC-----CCCCccCCCCCceEeEecCC
Confidence 5677887765411 234577888854 4555554
No 168
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=21.21 E-value=90 Score=18.64 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=13.2
Q ss_pred ccccccccccCCCceEEeeCCeecccch
Q psy4072 33 LRCAECHQFLDENCTCFVRDGKTYCKRD 60 (191)
Q Consensus 33 f~C~~C~~~l~~~~~~~~~~g~~yc~~c 60 (191)
+.|-.|+.+|. +....|.++|..|
T Consensus 11 L~CP~ck~~L~----~~~~~g~LvC~~c 34 (67)
T 2jny_A 11 LACPKDKGPLR----YLESEQLLVNERL 34 (67)
T ss_dssp CBCTTTCCBCE----EETTTTEEEETTT
T ss_pred hCCCCCCCcCe----EeCCCCEEEcCCC
Confidence 56777777663 2233455555554
No 169
>4av1_A Poly [ADP-ribose] polymerase 1; transferase, PARP1, DNA-binding domain, DBD, DNA repair, CAN poly- ADP(ribosyl)ation; 3.10A {Homo sapiens} PDB: 2l30_A
Probab=21.16 E-value=20 Score=27.04 Aligned_cols=14 Identities=14% Similarity=0.608 Sum_probs=0.0
Q ss_pred hhhhhcCCCccCCC
Q psy4072 95 TKCEKCNLNFKRED 108 (191)
Q Consensus 95 ~~C~~C~~~I~~~~ 108 (191)
..|.+|+..|..++
T Consensus 144 a~Ck~C~~kI~Kge 157 (223)
T 4av1_A 144 STCKGCMEKIEKGQ 157 (223)
T ss_dssp --------------
T ss_pred ccccccCCccCCCC
Confidence 37999999998654
No 170
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=20.48 E-value=41 Score=14.41 Aligned_cols=13 Identities=23% Similarity=0.667 Sum_probs=8.3
Q ss_pred ccccccccccCCC
Q psy4072 33 LRCAECHQFLDEN 45 (191)
Q Consensus 33 f~C~~C~~~l~~~ 45 (191)
|.|..|++.+...
T Consensus 2 ~~C~~C~k~f~~~ 14 (27)
T 1znf_A 2 YKCGLCERSFVEK 14 (27)
T ss_dssp CBCSSSCCBCSSH
T ss_pred ccCCCCCCcCCCH
Confidence 5677777766543
No 171
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=20.48 E-value=89 Score=18.61 Aligned_cols=36 Identities=14% Similarity=0.037 Sum_probs=18.5
Q ss_pred ccccCCCCCCCCCceeeeCCccCCcccc--ccccCCCCC
Q psy4072 124 CCVVCGKQLVPGDEFALREDGLFCKDDH--EGMDKSSNG 160 (191)
Q Consensus 124 ~C~~C~~~l~~~~~~~~~~~~~~C~~c~--~~~~~~~~~ 160 (191)
.|..|+..-. ...--..+|..+|..|. .+..+..-|
T Consensus 11 ~C~~C~t~~T-p~WR~gp~G~~LCNaCGl~~~~~~~~RP 48 (66)
T 4gat_A 11 TCTNCFTQTT-PLWRRNPEGQPLCNACGLFLKLHGVVRP 48 (66)
T ss_dssp CCTTTCCCCC-SSCEEETTTEEECHHHHHHHHHHCSCCC
T ss_pred CCCCCCCCCC-CcCCcCCCCCCccHHHHHHHHHcCCCCc
Confidence 4556655443 22223335668899993 344444333
Done!