Your job contains 1 sequence.
>psy4072
KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD
YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV
QCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNNTNINNNLHNLNNEG
SNSGKIQLYLL
The BLAST search returned 9 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy4072
(191 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-980526-112 - symbol:isl1 "islet1" species:7... 401 2.4e-37 1
UNIPROTKB|A6H796 - symbol:ISL1 "ISL1 protein" species:991... 396 8.0e-37 1
UNIPROTKB|F1PP21 - symbol:ISL1 "Uncharacterized protein" ... 396 8.0e-37 1
UNIPROTKB|D6RBJ1 - symbol:ISL1 "Insulin gene enhancer pro... 396 8.0e-37 1
UNIPROTKB|P61371 - symbol:ISL1 "Insulin gene enhancer pro... 396 8.0e-37 1
UNIPROTKB|F1SMF7 - symbol:ISL1 "Uncharacterized protein" ... 396 8.0e-37 1
MGI|MGI:101791 - symbol:Isl1 "ISL1 transcription factor, ... 396 8.0e-37 1
RGD|61957 - symbol:Isl1 "ISL LIM homeobox 1" species:1011... 396 8.0e-37 1
UNIPROTKB|P50211 - symbol:ISL1 "Insulin gene enhancer pro... 392 2.1e-36 1
FB|FBgn0003896 - symbol:tup "tailup" species:7227 "Drosop... 379 5.1e-35 1
ZFIN|ZDB-GENE-990415-133 - symbol:isl2b "islet2b" species... 350 6.0e-32 1
UNIPROTKB|E1BM60 - symbol:ISL2 "Uncharacterized protein" ... 346 1.6e-31 1
UNIPROTKB|Q96A47 - symbol:ISL2 "Insulin gene enhancer pro... 346 1.6e-31 1
UNIPROTKB|H0YKY2 - symbol:ISL2 "Insulin gene enhancer pro... 346 1.6e-31 1
ZFIN|ZDB-GENE-980526-562 - symbol:isl2a "islet2a" species... 343 3.3e-31 1
MGI|MGI:109156 - symbol:Isl2 "insulin related protein 2 (... 342 4.2e-31 1
RGD|621849 - symbol:Isl2 "ISL LIM homeobox 2" species:101... 342 4.2e-31 1
UNIPROTKB|P50480 - symbol:Isl2 "Insulin gene enhancer pro... 342 4.2e-31 1
UNIPROTKB|P53410 - symbol:ISL2 "Insulin gene enhancer pro... 312 6.4e-28 1
UNIPROTKB|E1BWH2 - symbol:E1BWH2 "Uncharacterized protein... 312 6.4e-28 1
UNIPROTKB|F1N959 - symbol:F1N959 "Uncharacterized protein... 312 6.4e-28 1
UNIPROTKB|H0YN25 - symbol:ISL2 "Insulin gene enhancer pro... 302 7.3e-27 1
ZFIN|ZDB-GENE-040624-1 - symbol:isl1l "islet1, like" spec... 280 1.6e-24 1
UNIPROTKB|D6RAK3 - symbol:ISL1 "Insulin gene enhancer pro... 256 5.5e-22 1
WB|WBGene00002989 - symbol:lim-7 species:6239 "Caenorhabd... 247 1.7e-20 1
UNIPROTKB|F1MC25 - symbol:LMX1A "Uncharacterized protein"... 240 4.6e-20 1
UNIPROTKB|F1PDJ1 - symbol:LMX1A "Uncharacterized protein"... 240 4.6e-20 1
UNIPROTKB|Q8TE12 - symbol:LMX1A "LIM homeobox transcripti... 240 4.6e-20 1
ZFIN|ZDB-GENE-050114-3 - symbol:lmx1ba "LIM homeobox tran... 235 1.6e-19 1
UNIPROTKB|P53413 - symbol:LMX1B "LIM/homeobox protein LMX... 234 2.1e-19 1
UNIPROTKB|F1NDZ5 - symbol:LMX1B "LIM/homeobox protein LMX... 233 2.8e-19 1
MGI|MGI:1888519 - symbol:Lmx1a "LIM homeobox transcriptio... 233 3.0e-19 1
RGD|1304784 - symbol:Lmx1a "LIM homeobox transcription fa... 233 3.0e-19 1
UNIPROTKB|J9NU69 - symbol:LMX1B "Uncharacterized protein"... 230 3.1e-19 1
MGI|MGI:1100513 - symbol:Lmx1b "LIM homeobox transcriptio... 230 5.6e-19 1
UNIPROTKB|G3V877 - symbol:Lmx1b "LIM homeobox transcripti... 230 5.6e-19 1
UNIPROTKB|O60663 - symbol:LMX1B "LIM homeobox transcripti... 230 6.3e-19 1
UNIPROTKB|B7ZLH2 - symbol:LMX1B "LMX1B protein" species:9... 230 6.7e-19 1
UNIPROTKB|F8VYP0 - symbol:LMX1B "LIM homeobox transcripti... 230 7.8e-19 1
UNIPROTKB|F8W7W6 - symbol:LMX1B "LIM homeobox transcripti... 230 8.8e-19 1
ZFIN|ZDB-GENE-050114-2 - symbol:lmx1bb "LIM homeobox tran... 228 9.9e-19 1
UNIPROTKB|Q8UVR3 - symbol:lmx1b.1 "LIM homeobox transcrip... 229 1.1e-18 1
UNIPROTKB|F1S681 - symbol:LHX4 "Uncharacterized protein" ... 227 1.2e-18 1
UNIPROTKB|F1MFM7 - symbol:LHX4 "Uncharacterized protein" ... 228 1.2e-18 1
UNIPROTKB|Q969G2 - symbol:LHX4 "LIM/homeobox protein Lhx4... 228 1.2e-18 1
MGI|MGI:101776 - symbol:Lhx4 "LIM homeobox protein 4" spe... 228 1.2e-18 1
UNIPROTKB|F1PCI5 - symbol:LHX4 "Uncharacterized protein" ... 228 1.3e-18 1
UNIPROTKB|H9L2C7 - symbol:LHX4 "Uncharacterized protein" ... 224 1.4e-18 1
ZFIN|ZDB-GENE-041014-332 - symbol:lmx1a "LIM homeobox tra... 225 1.9e-18 1
ZFIN|ZDB-GENE-060728-1 - symbol:lhx4 "LIM homeobox 4" spe... 225 2.7e-18 1
UNIPROTKB|A2I8Z7 - symbol:lhx9 "LIM/homeobox protein Lhx9... 224 3.0e-18 1
UNIPROTKB|P37137 - symbol:lhx5 "LIM/homeobox protein Lhx5... 225 3.1e-18 1
UNIPROTKB|F6QGM2 - symbol:LHX3 "LIM/homeobox protein Lhx3... 219 4.6e-18 1
UNIPROTKB|E1BSF2 - symbol:LHX9 "LIM/homeobox protein Lhx9... 217 7.8e-18 1
ZFIN|ZDB-GENE-980526-131 - symbol:lhx3 "LIM homeobox 3" s... 221 8.3e-18 1
ZFIN|ZDB-GENE-040426-1099 - symbol:zgc:56628 "zgc:56628" ... 216 9.5e-18 1
UNIPROTKB|Q68EY3 - symbol:lhx9 "LIM/homeobox protein Lhx9... 216 1.1e-17 1
UNIPROTKB|H0YM35 - symbol:LHX2 "LIM/homeobox protein Lhx2... 215 1.2e-17 1
FB|FBgn0013751 - symbol:Awh "Arrowhead" species:7227 "Dro... 215 1.2e-17 1
UNIPROTKB|P53412 - symbol:LHX3 "LIM/homeobox protein Lhx3... 219 1.3e-17 1
ZFIN|ZDB-GENE-980526-484 - symbol:lhx5 "LIM homeobox 5" s... 219 1.4e-17 1
UNIPROTKB|F1NV70 - symbol:LHX9 "LIM/homeobox protein Lhx9... 217 1.9e-17 1
UNIPROTKB|A6QQY6 - symbol:LHX5 "Uncharacterized protein" ... 218 1.9e-17 1
UNIPROTKB|E2RRP3 - symbol:LHX5 "Uncharacterized protein" ... 218 1.9e-17 1
UNIPROTKB|Q9H2C1 - symbol:LHX5 "LIM/homeobox protein Lhx5... 218 1.9e-17 1
MGI|MGI:107792 - symbol:Lhx5 "LIM homeobox protein 5" spe... 218 1.9e-17 1
RGD|71079 - symbol:Lhx5 "LIM homeobox 5" species:10116 "R... 218 1.9e-17 1
UNIPROTKB|E1BQX0 - symbol:LHX5 "Uncharacterized protein" ... 218 1.9e-17 1
UNIPROTKB|Q90881 - symbol:LHX9 "LIM/homeobox protein Lhx9... 217 2.3e-17 1
UNIPROTKB|F1RKD0 - symbol:LHX5 "Uncharacterized protein" ... 217 2.4e-17 1
UNIPROTKB|E2R2S6 - symbol:LHX9 "Uncharacterized protein" ... 213 2.4e-17 1
UNIPROTKB|H0YL54 - symbol:LHX9 "LIM/homeobox protein Lhx9... 213 2.8e-17 1
ZFIN|ZDB-GENE-980526-347 - symbol:lhx1a "LIM homeobox 1a"... 216 3.2e-17 1
ZFIN|ZDB-GENE-050417-210 - symbol:lhx9 "LIM homeobox 9" s... 215 3.8e-17 1
RGD|71076 - symbol:Lhx2 "LIM homeobox 2" species:10116 "R... 216 3.8e-17 1
UNIPROTKB|P36198 - symbol:Lhx2 "LIM/homeobox protein Lhx2... 216 3.8e-17 1
UNIPROTKB|E1BM14 - symbol:LHX2 "Uncharacterized protein" ... 215 4.2e-17 1
UNIPROTKB|E2RPC3 - symbol:LHX2 "Uncharacterized protein" ... 215 4.2e-17 1
UNIPROTKB|P50458 - symbol:LHX2 "LIM/homeobox protein Lhx2... 215 4.2e-17 1
UNIPROTKB|C4TJC6 - symbol:Lhx2 "LIM homeobox protein 2" s... 215 4.2e-17 1
MGI|MGI:96785 - symbol:Lhx2 "LIM homeobox protein 2" spec... 215 4.2e-17 1
UNIPROTKB|D4A380 - symbol:Lhx2 "LIM/homeobox protein Lhx2... 215 4.2e-17 1
UNIPROTKB|G3N0G6 - symbol:LHX2 "Uncharacterized protein" ... 215 4.9e-17 1
RGD|727956 - symbol:Lhx9 "LIM homeobox 9" species:10116 "... 213 5.9e-17 1
UNIPROTKB|Q80W90 - symbol:Lhx9 "LIM/homeobox protein Lhx9... 213 5.9e-17 1
UNIPROTKB|P36200 - symbol:lhx3 "LIM/homeobox protein Lhx3... 213 6.3e-17 1
UNIPROTKB|E2R2S5 - symbol:LHX9 "Uncharacterized protein" ... 213 6.4e-17 1
UNIPROTKB|Q9NQ69 - symbol:LHX9 "LIM/homeobox protein Lhx9... 213 6.4e-17 1
MGI|MGI:1316721 - symbol:Lhx9 "LIM homeobox protein 9" sp... 213 6.4e-17 1
UNIPROTKB|Q5ISK2 - symbol:Q5ISK2 "LIM homeobox protein 1"... 213 6.8e-17 1
UNIPROTKB|F1NX79 - symbol:LHX1 "LIM/homeobox protein Lhx1... 213 6.9e-17 1
UNIPROTKB|P53411 - symbol:LHX1 "LIM/homeobox protein Lhx1... 213 6.9e-17 1
UNIPROTKB|A7Z015 - symbol:LHX1 "Uncharacterized protein" ... 213 6.9e-17 1
UNIPROTKB|E2RMA8 - symbol:LHX1 "Uncharacterized protein" ... 213 6.9e-17 1
UNIPROTKB|P48742 - symbol:LHX1 "LIM/homeobox protein Lhx1... 213 6.9e-17 1
UNIPROTKB|F2Z531 - symbol:LHX1 "Uncharacterized protein" ... 213 6.9e-17 1
UNIPROTKB|P63008 - symbol:Lhx1 "LIM/homeobox protein Lhx1... 213 6.9e-17 1
UNIPROTKB|Q5IS44 - symbol:LHX1 "LIM/homeobox protein Lhx1... 213 6.9e-17 1
UNIPROTKB|Q5IS89 - symbol:LHX1 "LIM/homeobox protein Lhx1... 213 6.9e-17 1
MGI|MGI:99783 - symbol:Lhx1 "LIM homeobox protein 1" spec... 213 6.9e-17 1
WARNING: Descriptions of 397 database sequences were not reported due to the
limiting value of parameter V = 100.
>ZFIN|ZDB-GENE-980526-112 [details] [associations]
symbol:isl1 "islet1" species:7955 "Danio rerio"
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0048936
"peripheral nervous system neuron axonogenesis" evidence=IMP]
[GO:0031017 "exocrine pancreas development" evidence=IMP]
[GO:0048665 "neuron fate specification" evidence=IGI;IMP]
[GO:0021522 "spinal cord motor neuron differentiation"
evidence=IGI] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0055011 "atrial cardiac muscle cell differentiation"
evidence=IMP] [GO:0055012 "ventricular cardiac muscle cell
differentiation" evidence=IMP] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389
ZFIN:ZDB-GENE-980526-112 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0021522 GO:GO:0048665
GeneTree:ENSGT00700000104050 GO:GO:0031017 eggNOG:COG5576 CTD:3670
HOVERGEN:HBG004671 KO:K09370 EMBL:D21135 EMBL:AL954694
EMBL:BC060892 IPI:IPI00487340 PIR:I51739 RefSeq:NP_571037.1
UniGene:Dr.75106 ProteinModelPortal:P53405 SMR:P53405 STRING:P53405
Ensembl:ENSDART00000010896 GeneID:30147 KEGG:dre:30147
HOGENOM:HOG000236304 InParanoid:A2AWM5 OMA:TDMGDMG
OrthoDB:EOG4G4GQR NextBio:20806622 Bgee:P53405 GO:GO:0055011
GO:GO:0048936 Uniprot:P53405
Length = 349
Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
Identities = 63/93 (67%), Positives = 82/93 (88%)
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
+E NQ+LDE+CTCFVRDGKTYCKRDY+RL+G KC KCN+ F + DFVMRA++K+YH++CF
Sbjct: 46 AECNQYLDESCTCFVRDGKTYCKRDYIRLYGIKCAKCNIGFSKNDFVMRARSKVYHIECF 105
Query: 124 CCVVCGKQLVPGDEFALREDGLFCKDDHEGMDK 156
CV C +QL+PGDEFALREDGLFC+ DH+ +++
Sbjct: 106 RCVACSRQLIPGDEFALREDGLFCRADHDVVER 138
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 53/62 (85%), Positives = 60/62 (96%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
KR +SLCVGCG QIHDQYILRV+PDLEWHAACL+CAEC+Q+LDE+CTCFVRDGKTYCKRD
Sbjct: 11 KRLISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRD 70
Query: 61 YV 62
Y+
Sbjct: 71 YI 72
>UNIPROTKB|A6H796 [details] [associations]
symbol:ISL1 "ISL1 protein" species:9913 "Bos taurus"
[GO:0005634 "nucleus" evidence=IEA] [GO:0090090 "negative
regulation of canonical Wnt receptor signaling pathway"
evidence=IEA] [GO:0071657 "positive regulation of granulocyte
colony-stimulating factor production" evidence=IEA] [GO:0060913
"cardiac cell fate determination" evidence=IEA] [GO:0060413 "atrial
septum morphogenesis" evidence=IEA] [GO:0060384 "innervation"
evidence=IEA] [GO:0060379 "cardiac muscle cell myoblast
differentiation" evidence=IEA] [GO:0060037 "pharyngeal system
development" evidence=IEA] [GO:0055010 "ventricular cardiac muscle
tissue morphogenesis" evidence=IEA] [GO:0050728 "negative
regulation of inflammatory response" evidence=IEA] [GO:0048936
"peripheral nervous system neuron axonogenesis" evidence=IEA]
[GO:0048880 "sensory system development" evidence=IEA] [GO:0045766
"positive regulation of angiogenesis" evidence=IEA] [GO:0045665
"negative regulation of neuron differentiation" evidence=IEA]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA] [GO:0043425 "bHLH transcription factor binding"
evidence=IEA] [GO:0043388 "positive regulation of DNA binding"
evidence=IEA] [GO:0042517 "positive regulation of tyrosine
phosphorylation of Stat3 protein" evidence=IEA] [GO:0032760
"positive regulation of tumor necrosis factor production"
evidence=IEA] [GO:0032755 "positive regulation of interleukin-6
production" evidence=IEA] [GO:0032735 "positive regulation of
interleukin-12 production" evidence=IEA] [GO:0032731 "positive
regulation of interleukin-1 beta production" evidence=IEA]
[GO:0032730 "positive regulation of interleukin-1 alpha production"
evidence=IEA] [GO:0032729 "positive regulation of interferon-gamma
production" evidence=IEA] [GO:0032725 "positive regulation of
granulocyte macrophage colony-stimulating factor production"
evidence=IEA] [GO:0031290 "retinal ganglion cell axon guidance"
evidence=IEA] [GO:0031016 "pancreas development" evidence=IEA]
[GO:0021983 "pituitary gland development" evidence=IEA] [GO:0021559
"trigeminal nerve development" evidence=IEA] [GO:0021524 "visceral
motor neuron differentiation" evidence=IEA] [GO:0021520 "spinal
cord motor neuron cell fate specification" evidence=IEA]
[GO:0010575 "positive regulation vascular endothelial growth factor
production" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003266 "regulation of secondary heart field
cardioblast proliferation" evidence=IEA] [GO:0003215 "cardiac right
ventricle morphogenesis" evidence=IEA] [GO:0003203 "endocardial
cushion morphogenesis" evidence=IEA] [GO:0003148 "outflow tract
septum morphogenesis" evidence=IEA] [GO:0003139 "secondary heart
field specification" evidence=IEA] [GO:0001755 "neural crest cell
migration" evidence=IEA] [GO:0001158 "enhancer sequence-specific
DNA binding" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0001102 "RNA
polymerase II activating transcription factor binding"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0008284 GO:GO:0001755
GO:GO:0008270 GO:GO:0045665 GO:GO:0043524 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0000122
Gene3D:2.10.110.10 GO:GO:0060037 GO:GO:0090090 GO:GO:0031016
GO:GO:0021983 GO:GO:0001105 GO:GO:0021559 GO:GO:0001158
GO:GO:0042517 GeneTree:ENSGT00700000104050 GO:GO:0055010
GO:GO:0003203 GO:GO:0003139 GO:GO:0031290 GO:GO:0043388
GO:GO:0060413 GO:GO:0003266 eggNOG:COG5576 GO:GO:0003148
GO:GO:0003215 GO:GO:0060384 GO:GO:0021520 CTD:3670
HOVERGEN:HBG004671 KO:K09370 HOGENOM:HOG000236304 OMA:TDMGDMG
OrthoDB:EOG4G4GQR GO:GO:0048936 GO:GO:0060913 GO:GO:0060379
GO:GO:0048880 GO:GO:0021524 EMBL:DAAA02050419 EMBL:BC146163
IPI:IPI00854388 RefSeq:NP_001092600.1 UniGene:Bt.28168 SMR:A6H796
STRING:A6H796 Ensembl:ENSBTAT00000001638 GeneID:614040
KEGG:bta:614040 InParanoid:A6H796 NextBio:20898906 Uniprot:A6H796
Length = 349
Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
Identities = 62/93 (66%), Positives = 82/93 (88%)
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
+E NQ+LDE+CTCFVRDGKTYCKRDY+RL+G KC KC++ F + DFVMRA++K+YH++CF
Sbjct: 46 AECNQYLDESCTCFVRDGKTYCKRDYIRLYGIKCAKCSIGFSKNDFVMRARSKVYHIECF 105
Query: 124 CCVVCGKQLVPGDEFALREDGLFCKDDHEGMDK 156
CV C +QL+PGDEFALREDGLFC+ DH+ +++
Sbjct: 106 RCVACSRQLIPGDEFALREDGLFCRADHDVVER 138
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 59/102 (57%), Positives = 74/102 (72%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
KR +SLCVGCG QIHDQYILRV+PDLEWHAACL+CAEC+Q+LDE+CTCFVRDGKTYCKRD
Sbjct: 11 KRLISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRD 70
Query: 61 YVSSEKNQFLDENCT-CFVRDGKT-YCKRDYVRLFGTKCEKC 100
Y+ + C C + K + R +++ +C +C
Sbjct: 71 YI-----RLYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRC 107
>UNIPROTKB|F1PP21 [details] [associations]
symbol:ISL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 OMA:TDMGDMG EMBL:AAEX03003122
Ensembl:ENSCAFT00000029303 Uniprot:F1PP21
Length = 360
Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
Identities = 62/93 (66%), Positives = 82/93 (88%)
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
+E NQ+LDE+CTCFVRDGKTYCKRDY+RL+G KC KC++ F + DFVMRA++K+YH++CF
Sbjct: 56 AECNQYLDESCTCFVRDGKTYCKRDYIRLYGIKCAKCSIGFSKNDFVMRARSKVYHIECF 115
Query: 124 CCVVCGKQLVPGDEFALREDGLFCKDDHEGMDK 156
CV C +QL+PGDEFALREDGLFC+ DH+ +++
Sbjct: 116 RCVACSRQLIPGDEFALREDGLFCRADHDVVER 148
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 59/102 (57%), Positives = 74/102 (72%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
KR +SLCVGCG QIHDQYILRV+PDLEWHAACL+CAEC+Q+LDE+CTCFVRDGKTYCKRD
Sbjct: 21 KRLISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRD 80
Query: 61 YVSSEKNQFLDENCT-CFVRDGKT-YCKRDYVRLFGTKCEKC 100
Y+ + C C + K + R +++ +C +C
Sbjct: 81 YI-----RLYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRC 117
>UNIPROTKB|D6RBJ1 [details] [associations]
symbol:ISL1 "Insulin gene enhancer protein ISL-1"
species:9606 "Homo sapiens" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 HOGENOM:HOG000236304 HGNC:HGNC:6132
EMBL:AC010478 IPI:IPI00966899 ProteinModelPortal:D6RBJ1 SMR:D6RBJ1
Ensembl:ENST00000511384 ArrayExpress:D6RBJ1 Bgee:D6RBJ1
Uniprot:D6RBJ1
Length = 326
Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
Identities = 62/93 (66%), Positives = 82/93 (88%)
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
+E NQ+LDE+CTCFVRDGKTYCKRDY+RL+G KC KC++ F + DFVMRA++K+YH++CF
Sbjct: 46 AECNQYLDESCTCFVRDGKTYCKRDYIRLYGIKCAKCSIGFSKNDFVMRARSKVYHIECF 105
Query: 124 CCVVCGKQLVPGDEFALREDGLFCKDDHEGMDK 156
CV C +QL+PGDEFALREDGLFC+ DH+ +++
Sbjct: 106 RCVACSRQLIPGDEFALREDGLFCRADHDVVER 138
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 59/102 (57%), Positives = 74/102 (72%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
KR +SLCVGCG QIHDQYILRV+PDLEWHAACL+CAEC+Q+LDE+CTCFVRDGKTYCKRD
Sbjct: 11 KRLISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRD 70
Query: 61 YVSSEKNQFLDENCT-CFVRDGKT-YCKRDYVRLFGTKCEKC 100
Y+ + C C + K + R +++ +C +C
Sbjct: 71 YI-----RLYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRC 107
>UNIPROTKB|P61371 [details] [associations]
symbol:ISL1 "Insulin gene enhancer protein ISL-1"
species:9606 "Homo sapiens" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0001755 "neural crest cell
migration" evidence=IEA] [GO:0003266 "regulation of secondary heart
field cardioblast proliferation" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0008284 "positive regulation
of cell proliferation" evidence=IEA] [GO:0021520 "spinal cord motor
neuron cell fate specification" evidence=IEA] [GO:0021524 "visceral
motor neuron differentiation" evidence=IEA] [GO:0021983 "pituitary
gland development" evidence=IEA] [GO:0031103 "axon regeneration"
evidence=IEA] [GO:0031290 "retinal ganglion cell axon guidance"
evidence=IEA] [GO:0042517 "positive regulation of tyrosine
phosphorylation of Stat3 protein" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0045665
"negative regulation of neuron differentiation" evidence=IEA]
[GO:0060379 "cardiac muscle cell myoblast differentiation"
evidence=IEA] [GO:0090090 "negative regulation of canonical Wnt
receptor signaling pathway" evidence=IEA] [GO:0003203 "endocardial
cushion morphogenesis" evidence=ISS] [GO:0010575 "positive
regulation vascular endothelial growth factor production"
evidence=ISS] [GO:0032729 "positive regulation of interferon-gamma
production" evidence=ISS] [GO:0032731 "positive regulation of
interleukin-1 beta production" evidence=ISS] [GO:0032755 "positive
regulation of interleukin-6 production" evidence=ISS] [GO:0045766
"positive regulation of angiogenesis" evidence=ISS] [GO:0071657
"positive regulation of granulocyte colony-stimulating factor
production" evidence=ISS] [GO:0005737 "cytoplasm" evidence=NAS]
[GO:0001158 "enhancer sequence-specific DNA binding"
evidence=IDA;NAS] [GO:0005634 "nucleus" evidence=NAS] [GO:0021522
"spinal cord motor neuron differentiation" evidence=ISS]
[GO:0048762 "mesenchymal cell differentiation" evidence=ISS]
[GO:0031016 "pancreas development" evidence=ISS] [GO:1901258
"positive regulation of macrophage colony-stimulating factor
production" evidence=ISS] [GO:0032725 "positive regulation of
granulocyte macrophage colony-stimulating factor production"
evidence=ISS] [GO:0032730 "positive regulation of interleukin-1
alpha production" evidence=ISS] [GO:0032735 "positive regulation of
interleukin-12 production" evidence=ISS] [GO:0032760 "positive
regulation of tumor necrosis factor production" evidence=ISS]
[GO:0050728 "negative regulation of inflammatory response"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0048936 "peripheral nervous system
neuron axonogenesis" evidence=ISS] [GO:0048665 "neuron fate
specification" evidence=ISS] [GO:0021559 "trigeminal nerve
development" evidence=ISS] [GO:0043524 "negative regulation of
neuron apoptotic process" evidence=ISS] [GO:0048880 "sensory system
development" evidence=ISS] [GO:0060384 "innervation" evidence=ISS]
[GO:0060413 "atrial septum morphogenesis" evidence=ISS] [GO:0060037
"pharyngeal system development" evidence=ISS] [GO:0055010
"ventricular cardiac muscle tissue morphogenesis" evidence=ISS]
[GO:0003215 "cardiac right ventricle morphogenesis" evidence=ISS]
[GO:0003151 "outflow tract morphogenesis" evidence=ISS] [GO:0003148
"outflow tract septum morphogenesis" evidence=ISS] [GO:0003139
"secondary heart field specification" evidence=IMP] [GO:0043425
"bHLH transcription factor binding" evidence=IPI] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=IDA]
[GO:0001102 "RNA polymerase II activating transcription factor
binding" evidence=IPI] [GO:0060913 "cardiac cell fate
determination" evidence=IDA] [GO:0071385 "cellular response to
glucocorticoid stimulus" evidence=ISS] [GO:0032024 "positive
regulation of insulin secretion" evidence=IC] [GO:0090074 "negative
regulation of protein homodimerization activity" evidence=ISS]
[GO:0033147 "negative regulation of intracellular estrogen receptor
signaling pathway" evidence=ISS] [GO:0030331 "estrogen receptor
binding" evidence=ISS] [GO:0016922 "ligand-dependent nuclear
receptor binding" evidence=ISS] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0005737 GO:GO:0046872 GO:GO:0008284 GO:GO:0001755
GO:GO:0050728 GO:GO:0008270 GO:GO:0071385 GO:GO:0045665
GO:GO:0043524 GO:GO:0032755 GO:GO:0010575 GO:GO:0032024
GO:GO:0003700 GO:GO:0045766 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0000122 Gene3D:2.10.110.10 GO:GO:0021522
GO:GO:0060037 GO:GO:0090090 GO:GO:0032731 GO:GO:0031016
GO:GO:0021983 GO:GO:0001105 GO:GO:0030331 GO:GO:0021559
GO:GO:0001158 GO:GO:0042517 GO:GO:0048665 GO:GO:0032729
GO:GO:0032760 GO:GO:0016922 GO:GO:0031103 GO:GO:0055010
GO:GO:0003203 GO:GO:0048762 GO:GO:0003139 GO:GO:0031290
GO:GO:0043388 GO:GO:0032730 GO:GO:0032735 GO:GO:0071657
GO:GO:0060413 GO:GO:0033147 GO:GO:0003266 eggNOG:COG5576
GO:GO:0003148 GO:GO:0003215 GO:GO:0060384 GO:GO:0021520
GO:GO:0032725 CTD:3670 HOVERGEN:HBG004671 KO:K09370
HOGENOM:HOG000236304 OMA:TDMGDMG OrthoDB:EOG4G4GQR GO:GO:0048936
EMBL:S70721 EMBL:U07559 EMBL:BC031213 IPI:IPI00025071 PIR:I53277
RefSeq:NP_002193.2 UniGene:Hs.505 ProteinModelPortal:P61371
SMR:P61371 IntAct:P61371 STRING:P61371 PhosphoSite:P61371
DMDM:47606423 PRIDE:P61371 DNASU:3670 Ensembl:ENST00000230658
GeneID:3670 KEGG:hsa:3670 UCSC:uc003jor.3 GeneCards:GC05P050714
HGNC:HGNC:6132 MIM:600366 neXtProt:NX_P61371 PharmGKB:PA29932
InParanoid:P61371 PhylomeDB:P61371 GenomeRNAi:3670 NextBio:14363
ArrayExpress:P61371 Bgee:P61371 CleanEx:HS_ISL1
Genevestigator:P61371 GermOnline:ENSG00000016082 GO:GO:0060913
GO:GO:0060379 GO:GO:0090074 GO:GO:0048880 GO:GO:0021524
Uniprot:P61371
Length = 349
Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
Identities = 62/93 (66%), Positives = 82/93 (88%)
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
+E NQ+LDE+CTCFVRDGKTYCKRDY+RL+G KC KC++ F + DFVMRA++K+YH++CF
Sbjct: 46 AECNQYLDESCTCFVRDGKTYCKRDYIRLYGIKCAKCSIGFSKNDFVMRARSKVYHIECF 105
Query: 124 CCVVCGKQLVPGDEFALREDGLFCKDDHEGMDK 156
CV C +QL+PGDEFALREDGLFC+ DH+ +++
Sbjct: 106 RCVACSRQLIPGDEFALREDGLFCRADHDVVER 138
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 59/102 (57%), Positives = 74/102 (72%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
KR +SLCVGCG QIHDQYILRV+PDLEWHAACL+CAEC+Q+LDE+CTCFVRDGKTYCKRD
Sbjct: 11 KRLISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRD 70
Query: 61 YVSSEKNQFLDENCT-CFVRDGKT-YCKRDYVRLFGTKCEKC 100
Y+ + C C + K + R +++ +C +C
Sbjct: 71 YI-----RLYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRC 107
>UNIPROTKB|F1SMF7 [details] [associations]
symbol:ISL1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0090090 "negative
regulation of canonical Wnt receptor signaling pathway"
evidence=IEA] [GO:0071657 "positive regulation of granulocyte
colony-stimulating factor production" evidence=IEA] [GO:0060913
"cardiac cell fate determination" evidence=IEA] [GO:0060413 "atrial
septum morphogenesis" evidence=IEA] [GO:0060384 "innervation"
evidence=IEA] [GO:0060379 "cardiac muscle cell myoblast
differentiation" evidence=IEA] [GO:0060037 "pharyngeal system
development" evidence=IEA] [GO:0055010 "ventricular cardiac muscle
tissue morphogenesis" evidence=IEA] [GO:0050728 "negative
regulation of inflammatory response" evidence=IEA] [GO:0048936
"peripheral nervous system neuron axonogenesis" evidence=IEA]
[GO:0048880 "sensory system development" evidence=IEA] [GO:0045766
"positive regulation of angiogenesis" evidence=IEA] [GO:0045665
"negative regulation of neuron differentiation" evidence=IEA]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA] [GO:0043425 "bHLH transcription factor binding"
evidence=IEA] [GO:0043388 "positive regulation of DNA binding"
evidence=IEA] [GO:0042517 "positive regulation of tyrosine
phosphorylation of Stat3 protein" evidence=IEA] [GO:0032760
"positive regulation of tumor necrosis factor production"
evidence=IEA] [GO:0032755 "positive regulation of interleukin-6
production" evidence=IEA] [GO:0032735 "positive regulation of
interleukin-12 production" evidence=IEA] [GO:0032731 "positive
regulation of interleukin-1 beta production" evidence=IEA]
[GO:0032730 "positive regulation of interleukin-1 alpha production"
evidence=IEA] [GO:0032729 "positive regulation of interferon-gamma
production" evidence=IEA] [GO:0032725 "positive regulation of
granulocyte macrophage colony-stimulating factor production"
evidence=IEA] [GO:0031290 "retinal ganglion cell axon guidance"
evidence=IEA] [GO:0031016 "pancreas development" evidence=IEA]
[GO:0021983 "pituitary gland development" evidence=IEA] [GO:0021559
"trigeminal nerve development" evidence=IEA] [GO:0021524 "visceral
motor neuron differentiation" evidence=IEA] [GO:0021520 "spinal
cord motor neuron cell fate specification" evidence=IEA]
[GO:0010575 "positive regulation vascular endothelial growth factor
production" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003266 "regulation of secondary heart field
cardioblast proliferation" evidence=IEA] [GO:0003215 "cardiac right
ventricle morphogenesis" evidence=IEA] [GO:0003203 "endocardial
cushion morphogenesis" evidence=IEA] [GO:0003148 "outflow tract
septum morphogenesis" evidence=IEA] [GO:0003139 "secondary heart
field specification" evidence=IEA] [GO:0001755 "neural crest cell
migration" evidence=IEA] [GO:0001158 "enhancer sequence-specific
DNA binding" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0001102 "RNA
polymerase II activating transcription factor binding"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0008284 GO:GO:0001755
GO:GO:0008270 GO:GO:0045665 GO:GO:0043524 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0000122
Gene3D:2.10.110.10 GO:GO:0060037 GO:GO:0090090 GO:GO:0031016
GO:GO:0021983 GO:GO:0001105 GO:GO:0021559 GO:GO:0001158
GO:GO:0042517 GeneTree:ENSGT00700000104050 GO:GO:0055010
GO:GO:0003203 GO:GO:0003139 GO:GO:0031290 GO:GO:0043388
GO:GO:0060413 GO:GO:0003266 GO:GO:0003148 GO:GO:0003215
GO:GO:0060384 GO:GO:0021520 OMA:TDMGDMG GO:GO:0048936 GO:GO:0060913
GO:GO:0060379 GO:GO:0048880 GO:GO:0021524 EMBL:CU915536
Ensembl:ENSSSCT00000018387 Uniprot:F1SMF7
Length = 361
Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
Identities = 62/93 (66%), Positives = 82/93 (88%)
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
+E NQ+LDE+CTCFVRDGKTYCKRDY+RL+G KC KC++ F + DFVMRA++K+YH++CF
Sbjct: 58 AECNQYLDESCTCFVRDGKTYCKRDYIRLYGIKCAKCSIGFSKNDFVMRARSKVYHIECF 117
Query: 124 CCVVCGKQLVPGDEFALREDGLFCKDDHEGMDK 156
CV C +QL+PGDEFALREDGLFC+ DH+ +++
Sbjct: 118 RCVACSRQLIPGDEFALREDGLFCRADHDVVER 150
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 59/102 (57%), Positives = 74/102 (72%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
KR +SLCVGCG QIHDQYILRV+PDLEWHAACL+CAEC+Q+LDE+CTCFVRDGKTYCKRD
Sbjct: 23 KRLISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRD 82
Query: 61 YVSSEKNQFLDENCT-CFVRDGKT-YCKRDYVRLFGTKCEKC 100
Y+ + C C + K + R +++ +C +C
Sbjct: 83 YI-----RLYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRC 119
>MGI|MGI:101791 [details] [associations]
symbol:Isl1 "ISL1 transcription factor, LIM/homeodomain"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0001102 "RNA polymerase II activating transcription factor
binding" evidence=ISO] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=ISO;IDA] [GO:0001158 "enhancer
sequence-specific DNA binding" evidence=ISO] [GO:0001755 "neural
crest cell migration" evidence=IGI] [GO:0003007 "heart
morphogenesis" evidence=IGI] [GO:0003139 "secondary heart field
specification" evidence=ISO] [GO:0003148 "outflow tract septum
morphogenesis" evidence=IGI] [GO:0003151 "outflow tract
morphogenesis" evidence=IGI] [GO:0003203 "endocardial cushion
morphogenesis" evidence=IGI] [GO:0003215 "cardiac right ventricle
morphogenesis" evidence=IGI] [GO:0003266 "regulation of secondary
heart field cardioblast proliferation" evidence=IMP] [GO:0003677
"DNA binding" evidence=IDA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005622 "intracellular" evidence=IDA]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;ISO] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0007507
"heart development" evidence=IMP] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IDA] [GO:0010468 "regulation of gene
expression" evidence=IMP] [GO:0010575 "positive regulation vascular
endothelial growth factor production" evidence=IDA] [GO:0016922
"ligand-dependent nuclear receptor binding" evidence=ISO]
[GO:0021520 "spinal cord motor neuron cell fate specification"
evidence=IGI] [GO:0021522 "spinal cord motor neuron
differentiation" evidence=IMP] [GO:0021524 "visceral motor neuron
differentiation" evidence=IGI] [GO:0021559 "trigeminal nerve
development" evidence=IMP] [GO:0021983 "pituitary gland
development" evidence=IMP] [GO:0030182 "neuron differentiation"
evidence=IGI;IMP] [GO:0030331 "estrogen receptor binding"
evidence=ISO] [GO:0031016 "pancreas development" evidence=IMP]
[GO:0031290 "retinal ganglion cell axon guidance" evidence=IMP]
[GO:0032024 "positive regulation of insulin secretion"
evidence=ISO] [GO:0032725 "positive regulation of granulocyte
macrophage colony-stimulating factor production" evidence=IDA]
[GO:0032729 "positive regulation of interferon-gamma production"
evidence=IDA] [GO:0032730 "positive regulation of interleukin-1
alpha production" evidence=IDA] [GO:0032731 "positive regulation of
interleukin-1 beta production" evidence=IDA] [GO:0032735 "positive
regulation of interleukin-12 production" evidence=IDA] [GO:0032755
"positive regulation of interleukin-6 production" evidence=IDA]
[GO:0032760 "positive regulation of tumor necrosis factor
production" evidence=IDA] [GO:0033147 "negative regulation of
intracellular estrogen receptor signaling pathway" evidence=ISO]
[GO:0042517 "positive regulation of tyrosine phosphorylation of
Stat3 protein" evidence=IDA] [GO:0043388 "positive regulation of
DNA binding" evidence=IDA] [GO:0043425 "bHLH transcription factor
binding" evidence=ISO] [GO:0043524 "negative regulation of neuron
apoptotic process" evidence=IMP] [GO:0043565 "sequence-specific DNA
binding" evidence=ISO] [GO:0045665 "negative regulation of neuron
differentiation" evidence=IGI] [GO:0045766 "positive regulation of
angiogenesis" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter"
evidence=ISO;IGI;IDA;IMP] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0048663 "neuron fate commitment" evidence=IGI]
[GO:0048665 "neuron fate specification" evidence=IMP] [GO:0048762
"mesenchymal cell differentiation" evidence=IMP] [GO:0048880
"sensory system development" evidence=IMP] [GO:0048936 "peripheral
nervous system neuron axonogenesis" evidence=IMP] [GO:0050728
"negative regulation of inflammatory response" evidence=IMP]
[GO:0055010 "ventricular cardiac muscle tissue morphogenesis"
evidence=IGI] [GO:0060037 "pharyngeal system development"
evidence=IGI] [GO:0060379 "cardiac muscle cell myoblast
differentiation" evidence=IMP] [GO:0060384 "innervation"
evidence=IMP] [GO:0060413 "atrial septum morphogenesis"
evidence=IGI] [GO:0060913 "cardiac cell fate determination"
evidence=ISO;IMP] [GO:0071657 "positive regulation of granulocyte
colony-stimulating factor production" evidence=IDA] [GO:0090074
"negative regulation of protein homodimerization activity"
evidence=ISO] [GO:0090090 "negative regulation of canonical Wnt
receptor signaling pathway" evidence=IGI] [GO:1901258 "positive
regulation of macrophage colony-stimulating factor production"
evidence=IDA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 MGI:MGI:101791 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008284 GO:GO:0001755 GO:GO:0050728
GO:GO:0008270 GO:GO:0045665 GO:GO:0043524 GO:GO:0032755
GO:GO:0010575 GO:GO:0032024 GO:GO:0003700 GO:GO:0045766
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0000122
Gene3D:2.10.110.10 GO:GO:0060037 GO:GO:0090090 GO:GO:0032731
GO:GO:0031016 GO:GO:0021983 GO:GO:0001105 GO:GO:0021559
GO:GO:0001158 GO:GO:0042517 GO:GO:0032729 GO:GO:0032760
GeneTree:ENSGT00700000104050 GO:GO:0031103 GO:GO:0055010
GO:GO:0003203 GO:GO:0003139 GO:GO:0031290 GO:GO:0043388
GO:GO:0032730 GO:GO:0032735 GO:GO:0071657 GO:GO:0060413
GO:GO:0003266 eggNOG:COG5576 GO:GO:0003148 GO:GO:0003215
GO:GO:0060384 GO:GO:0021520 GO:GO:0032725 CTD:3670
HOVERGEN:HBG004671 KO:K09370 HOGENOM:HOG000236304 OMA:TDMGDMG
OrthoDB:EOG4G4GQR GO:GO:0048936 GO:GO:0060913 GO:GO:0060379
GO:GO:0048880 GO:GO:0021524 EMBL:AJ132765 EMBL:AB104633
IPI:IPI00121604 IPI:IPI00415262 RefSeq:NP_067434.3 UniGene:Mm.42242
PDB:2RGT PDBsum:2RGT ProteinModelPortal:P61372 SMR:P61372
MINT:MINT-4594016 STRING:P61372 PhosphoSite:P61372 PRIDE:P61372
Ensembl:ENSMUST00000036060 Ensembl:ENSMUST00000176044 GeneID:16392
KEGG:mmu:16392 UCSC:uc007ryf.2 InParanoid:P61372
EvolutionaryTrace:P61372 NextBio:289537 Bgee:P61372 CleanEx:MM_ISL1
Genevestigator:P61372 GermOnline:ENSMUSG00000042258 Uniprot:P61372
Length = 349
Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
Identities = 62/93 (66%), Positives = 82/93 (88%)
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
+E NQ+LDE+CTCFVRDGKTYCKRDY+RL+G KC KC++ F + DFVMRA++K+YH++CF
Sbjct: 46 AECNQYLDESCTCFVRDGKTYCKRDYIRLYGIKCAKCSIGFSKNDFVMRARSKVYHIECF 105
Query: 124 CCVVCGKQLVPGDEFALREDGLFCKDDHEGMDK 156
CV C +QL+PGDEFALREDGLFC+ DH+ +++
Sbjct: 106 RCVACSRQLIPGDEFALREDGLFCRADHDVVER 138
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 59/102 (57%), Positives = 74/102 (72%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
KR +SLCVGCG QIHDQYILRV+PDLEWHAACL+CAEC+Q+LDE+CTCFVRDGKTYCKRD
Sbjct: 11 KRLISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRD 70
Query: 61 YVSSEKNQFLDENCT-CFVRDGKT-YCKRDYVRLFGTKCEKC 100
Y+ + C C + K + R +++ +C +C
Sbjct: 71 YI-----RLYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRC 107
>RGD|61957 [details] [associations]
symbol:Isl1 "ISL LIM homeobox 1" species:10116 "Rattus norvegicus"
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0001102 "RNA
polymerase II activating transcription factor binding"
evidence=IEA;ISO] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=IEA;ISO] [GO:0001158 "enhancer
sequence-specific DNA binding" evidence=IEA;ISO] [GO:0001755 "neural
crest cell migration" evidence=IEA;ISO] [GO:0003007 "heart
morphogenesis" evidence=ISO] [GO:0003139 "secondary heart field
specification" evidence=IEA;ISO] [GO:0003148 "outflow tract septum
morphogenesis" evidence=IEA;ISO] [GO:0003151 "outflow tract
morphogenesis" evidence=ISO] [GO:0003203 "endocardial cushion
morphogenesis" evidence=IEA;ISO] [GO:0003215 "cardiac right
ventricle morphogenesis" evidence=IEA;ISO] [GO:0003266 "regulation
of secondary heart field cardioblast proliferation"
evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=ISO]
[GO:0003682 "chromatin binding" evidence=IEA;ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005622 "intracellular" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0007507 "heart development"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IEA;ISO] [GO:0010468 "regulation of gene expression"
evidence=ISO] [GO:0010575 "positive regulation vascular endothelial
growth factor production" evidence=IEA;ISO] [GO:0016922
"ligand-dependent nuclear receptor binding" evidence=IDA;IPI]
[GO:0021520 "spinal cord motor neuron cell fate specification"
evidence=IEA;ISO] [GO:0021522 "spinal cord motor neuron
differentiation" evidence=ISO] [GO:0021524 "visceral motor neuron
differentiation" evidence=IEA;ISO] [GO:0021559 "trigeminal nerve
development" evidence=IEA;ISO] [GO:0021983 "pituitary gland
development" evidence=IEA;ISO] [GO:0030182 "neuron differentiation"
evidence=ISO] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0031016 "pancreas development" evidence=IEA;ISO] [GO:0031103
"axon regeneration" evidence=IEP] [GO:0031290 "retinal ganglion cell
axon guidance" evidence=IEA;ISO] [GO:0032024 "positive regulation of
insulin secretion" evidence=IMP] [GO:0032725 "positive regulation of
granulocyte macrophage colony-stimulating factor production"
evidence=IEA;ISO] [GO:0032729 "positive regulation of
interferon-gamma production" evidence=IEA;ISO] [GO:0032730 "positive
regulation of interleukin-1 alpha production" evidence=IEA;ISO]
[GO:0032731 "positive regulation of interleukin-1 beta production"
evidence=IEA;ISO] [GO:0032735 "positive regulation of interleukin-12
production" evidence=IEA;ISO] [GO:0032755 "positive regulation of
interleukin-6 production" evidence=IEA;ISO] [GO:0032760 "positive
regulation of tumor necrosis factor production" evidence=IEA;ISO]
[GO:0033147 "negative regulation of intracellular estrogen receptor
signaling pathway" evidence=IDA] [GO:0042517 "positive regulation of
tyrosine phosphorylation of Stat3 protein" evidence=IEA;ISO]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA;ISO]
[GO:0043425 "bHLH transcription factor binding" evidence=IEA;ISO]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA;ISO] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0045665 "negative regulation of neuron
differentiation" evidence=IEA;ISO] [GO:0045766 "positive regulation
of angiogenesis" evidence=IEA;ISO] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=ISO;IDA]
[GO:0048663 "neuron fate commitment" evidence=ISO] [GO:0048665
"neuron fate specification" evidence=ISO] [GO:0048762 "mesenchymal
cell differentiation" evidence=ISO] [GO:0048880 "sensory system
development" evidence=IEA;ISO] [GO:0048936 "peripheral nervous
system neuron axonogenesis" evidence=IEA;ISO] [GO:0050728 "negative
regulation of inflammatory response" evidence=IEA;ISO] [GO:0055010
"ventricular cardiac muscle tissue morphogenesis" evidence=IEA;ISO]
[GO:0060037 "pharyngeal system development" evidence=IEA;ISO]
[GO:0060379 "cardiac muscle cell myoblast differentiation"
evidence=IEA;ISO] [GO:0060384 "innervation" evidence=IEA;ISO]
[GO:0060413 "atrial septum morphogenesis" evidence=IEA;ISO]
[GO:0060913 "cardiac cell fate determination" evidence=IEA;ISO]
[GO:0071385 "cellular response to glucocorticoid stimulus"
evidence=IEP] [GO:0071657 "positive regulation of granulocyte
colony-stimulating factor production" evidence=IEA;ISO] [GO:0090074
"negative regulation of protein homodimerization activity"
evidence=IDA] [GO:0090090 "negative regulation of canonical Wnt
receptor signaling pathway" evidence=IEA;ISO] [GO:1901258 "positive
regulation of macrophage colony-stimulating factor production"
evidence=ISO] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 RGD:61957 GO:GO:0005634 GO:GO:0046872 GO:GO:0008284
GO:GO:0001755 GO:GO:0043565 GO:GO:0008270 GO:GO:0071385
GO:GO:0045944 GO:GO:0045665 GO:GO:0043524 GO:GO:0032024
GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0000122 Gene3D:2.10.110.10 GO:GO:0060037 GO:GO:0090090
GO:GO:0031016 GO:GO:0021983 GO:GO:0001105 GO:GO:0030331
GO:GO:0021559 GO:GO:0001158 GO:GO:0042517
GeneTree:ENSGT00700000104050 GO:GO:0016922 GO:GO:0031103
GO:GO:0055010 GO:GO:0003203 GO:GO:0003139 GO:GO:0031290
GO:GO:0043388 GO:GO:0060413 GO:GO:0033147 GO:GO:0003266
eggNOG:COG5576 GO:GO:0003148 GO:GO:0003215 GO:GO:0060384
GO:GO:0021520 CTD:3670 HOVERGEN:HBG004671 KO:K09370
HOGENOM:HOG000236304 OMA:TDMGDMG OrthoDB:EOG4G4GQR GO:GO:0048936
GO:GO:0060913 GO:GO:0060379 GO:GO:0090074 GO:GO:0048880
GO:GO:0021524 EMBL:S69329 EMBL:AY557632 EMBL:X53258 IPI:IPI00201439
IPI:IPI00417237 PIR:I67417 RefSeq:NP_059035.3 UniGene:Rn.36202
ProteinModelPortal:P61374 SMR:P61374 STRING:P61374
PhosphoSite:P61374 PRIDE:P61374 Ensembl:ENSRNOT00000017305
GeneID:64444 KEGG:rno:64444 InParanoid:P61374 NextBio:613174
Genevestigator:P61374 GermOnline:ENSRNOG00000012556 Uniprot:P61374
Length = 349
Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
Identities = 62/93 (66%), Positives = 82/93 (88%)
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
+E NQ+LDE+CTCFVRDGKTYCKRDY+RL+G KC KC++ F + DFVMRA++K+YH++CF
Sbjct: 46 AECNQYLDESCTCFVRDGKTYCKRDYIRLYGIKCAKCSIGFSKNDFVMRARSKVYHIECF 105
Query: 124 CCVVCGKQLVPGDEFALREDGLFCKDDHEGMDK 156
CV C +QL+PGDEFALREDGLFC+ DH+ +++
Sbjct: 106 RCVACSRQLIPGDEFALREDGLFCRADHDVVER 138
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 59/102 (57%), Positives = 74/102 (72%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
KR +SLCVGCG QIHDQYILRV+PDLEWHAACL+CAEC+Q+LDE+CTCFVRDGKTYCKRD
Sbjct: 11 KRLISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRD 70
Query: 61 YVSSEKNQFLDENCT-CFVRDGKT-YCKRDYVRLFGTKCEKC 100
Y+ + C C + K + R +++ +C +C
Sbjct: 71 YI-----RLYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRC 107
>UNIPROTKB|P50211 [details] [associations]
symbol:ISL1 "Insulin gene enhancer protein ISL-1"
species:9031 "Gallus gallus" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IDA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0007275 GO:GO:0005634 GO:GO:0045892
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 EMBL:L35567
IPI:IPI00598855 PIR:I50369 RefSeq:NP_990745.1 UniGene:Gga.1507
ProteinModelPortal:P50211 SMR:P50211 GeneID:396383 KEGG:gga:396383
CTD:3670 HOVERGEN:HBG004671 KO:K09370 NextBio:20816425
Uniprot:P50211
Length = 349
Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
Identities = 62/93 (66%), Positives = 80/93 (86%)
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
+E NQ+LDE CTCFVRDGKTYCKRDY+RL+G KC KC++ F + DFVMRA+ K+YH++CF
Sbjct: 46 AECNQYLDETCTCFVRDGKTYCKRDYIRLYGIKCAKCSIGFSKNDFVMRARAKVYHIECF 105
Query: 124 CCVVCGKQLVPGDEFALREDGLFCKDDHEGMDK 156
CV C +QL+PGDEFALREDGLFC+ DH+ +++
Sbjct: 106 RCVACSRQLIPGDEFALREDGLFCRADHDVVER 138
Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 59/102 (57%), Positives = 73/102 (71%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
KR +SLCVGCG QIHDQYILRV+PDLEWHAACL+CAEC+Q+LDE CTCFVRDGKTYCKRD
Sbjct: 11 KRLISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDETCTCFVRDGKTYCKRD 70
Query: 61 YVSSEKNQFLDENCT-CFVRDGKT-YCKRDYVRLFGTKCEKC 100
Y+ + C C + K + R +++ +C +C
Sbjct: 71 YI-----RLYGIKCAKCSIGFSKNDFVMRARAKVYHIECFRC 107
>FB|FBgn0003896 [details] [associations]
symbol:tup "tailup" species:7227 "Drosophila melanogaster"
[GO:0008293 "torso signaling pathway" evidence=IGI] [GO:0007362
"terminal region determination" evidence=IGI] [GO:0007390
"germ-band shortening" evidence=IMP] [GO:0008258 "head involution"
evidence=NAS] [GO:0046665 "amnioserosa maintenance" evidence=IMP]
[GO:0007411 "axon guidance" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008045 "motor neuron axon guidance" evidence=IMP] [GO:0000977
"RNA polymerase II regulatory region sequence-specific DNA binding"
evidence=IDA] [GO:0001102 "RNA polymerase II activating
transcription factor binding" evidence=IPI] [GO:0007391 "dorsal
closure" evidence=IMP] [GO:0008407 "chaeta morphogenesis"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043433 "negative regulation of sequence-specific DNA binding
transcription factor activity" evidence=IDA] [GO:0070983 "dendrite
guidance" evidence=IMP] [GO:0035310 "notum cell fate specification"
evidence=IMP] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0007507 "heart
development" evidence=IMP] [GO:0000980 "RNA polymerase II distal
enhancer sequence-specific DNA binding" evidence=IDA] [GO:0048542
"lymph gland development" evidence=IMP] [GO:0003705 "RNA polymerase
II distal enhancer sequence-specific DNA binding transcription
factor activity" evidence=IDA] [GO:0022416 "chaeta development"
evidence=IMP] [GO:0007521 "muscle cell fate determination"
evidence=IMP] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0007507 GO:GO:0046872
GO:GO:0007391 GO:GO:0008293 GO:GO:0008270 GO:GO:0045944
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0003705 GO:GO:0000980
Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0043433 GO:GO:0048542
GO:GO:0035310 GO:GO:0008407 eggNOG:NOG264882 GO:GO:0007362
GO:GO:0070983 GO:GO:0008258 GO:GO:0007390 GO:GO:0007521 HSSP:P50480
GO:GO:0046665 EMBL:U89385 ProteinModelPortal:P92031 SMR:P92031
STRING:P92031 PRIDE:P92031 FlyBase:FBgn0003896 InParanoid:P92031
OrthoDB:EOG45DV52 ArrayExpress:P92031 Bgee:P92031 Uniprot:P92031
Length = 534
Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 64/93 (68%), Positives = 79/93 (84%)
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
E QFLDE+CTCFVRDGKTYCKRDYVRLFGTKC+KC +F + DFVMRAK KI+H++CF
Sbjct: 84 ECRQFLDESCTCFVRDGKTYCKRDYVRLFGTKCDKCGNSFSKNDFVMRAKTKIFHIECFR 143
Query: 125 CVVCGKQLVPGDEFALREDG-LFCKDDHEGMDK 156
C C +QL+PGDEFALR+ G L+CK+DH+ ++K
Sbjct: 144 CSACARQLLPGDEFALRDAGALYCKEDHDVLEK 176
Score = 344 (126.2 bits), Expect = 5.2e-31, P = 5.2e-31
Identities = 67/127 (52%), Positives = 86/127 (67%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K+RLS CVGCGGQIHDQYILRVAPDLEWHAACL+C EC QFLDE+CTCFVRDGKTYCKRD
Sbjct: 48 KQRLSHCVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVRDGKTYCKRD 107
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYV-----RLFGTKCEKCNLNFKR----EDFVM 111
YV + C + G ++ K D+V ++F +C +C+ ++ ++F +
Sbjct: 108 YV-----RLFGTKCD---KCGNSFSKNDFVMRAKTKIFHIECFRCSACARQLLPGDEFAL 159
Query: 112 RAKNKIY 118
R +Y
Sbjct: 160 RDAGALY 166
>ZFIN|ZDB-GENE-990415-133 [details] [associations]
symbol:isl2b "islet2b" species:7955 "Danio rerio"
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 ZFIN:ZDB-GENE-990415-133 GO:GO:0007275 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
eggNOG:NOG264882 GeneTree:ENSGT00700000104050 HOVERGEN:HBG004671
HOGENOM:HOG000236304 OrthoDB:EOG4G4GQR EMBL:D38454 EMBL:AL845510
EMBL:BC095011 EMBL:U09404 IPI:IPI00485578 PIR:I51735
RefSeq:NP_571039.1 UniGene:Dr.20916 ProteinModelPortal:P53407
SMR:P53407 STRING:P53407 Ensembl:ENSDART00000055936 GeneID:30151
KEGG:dre:30151 CTD:30151 InParanoid:P53407 OMA:HAHKQAE
NextBio:20806624 Bgee:P53407 Uniprot:P53407
Length = 358
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 57/87 (65%), Positives = 70/87 (80%)
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
E NQ+LDE CTCFVRDGKTYCKRDYVRLFG KC KC L F D VMRA++ +YH++CF
Sbjct: 57 ECNQYLDETCTCFVRDGKTYCKRDYVRLFGIKCAKCTLGFSSSDLVMRARDSVYHIECFR 116
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDH 151
C VC +QL+PGDEF++R++ L C+ DH
Sbjct: 117 CSVCSRQLLPGDEFSVRDEELLCRADH 143
Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
Identities = 51/62 (82%), Positives = 57/62 (91%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K L++CVGCG QIHDQYILRV+PDLEWHAACL+C EC+Q+LDE CTCFVRDGKTYCKRD
Sbjct: 21 KSGLAMCVGCGSQIHDQYILRVSPDLEWHAACLKCVECNQYLDETCTCFVRDGKTYCKRD 80
Query: 61 YV 62
YV
Sbjct: 81 YV 82
>UNIPROTKB|E1BM60 [details] [associations]
symbol:ISL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0045665 "negative
regulation of neuron differentiation" evidence=IEA] [GO:0031290
"retinal ganglion cell axon guidance" evidence=IEA] [GO:0021524
"visceral motor neuron differentiation" evidence=IEA] [GO:0021520
"spinal cord motor neuron cell fate specification" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0045665 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GeneTree:ENSGT00700000104050
GO:GO:0031290 GO:GO:0021520 GO:GO:0021524 OMA:RHDSAVQ
EMBL:DAAA02052446 IPI:IPI00701951 UniGene:Bt.34422
Ensembl:ENSBTAT00000022147 NextBio:20928153 Uniprot:E1BM60
Length = 359
Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
Identities = 57/88 (64%), Positives = 70/88 (79%)
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
+E +Q+LDE CTCFVRDGKTYCKRDYVRLFG KC KC + F D VMRA++ +YH++CF
Sbjct: 56 AECSQYLDETCTCFVRDGKTYCKRDYVRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECF 115
Query: 124 CCVVCGKQLVPGDEFALREDGLFCKDDH 151
C VC +QL+PGDEF+LRE L C+ DH
Sbjct: 116 RCSVCSRQLLPGDEFSLREHELLCRADH 143
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 49/58 (84%), Positives = 55/58 (94%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
++CVGCG QIHDQ+ILRV+PDLEWHAACL+CAEC Q+LDE CTCFVRDGKTYCKRDYV
Sbjct: 25 AMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYV 82
>UNIPROTKB|Q96A47 [details] [associations]
symbol:ISL2 "Insulin gene enhancer protein ISL-2"
species:9606 "Homo sapiens" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0021520 "spinal cord motor neuron cell
fate specification" evidence=IEA] [GO:0021524 "visceral motor
neuron differentiation" evidence=IEA] [GO:0031290 "retinal ganglion
cell axon guidance" evidence=IEA] [GO:0045665 "negative regulation
of neuron differentiation" evidence=IEA] [GO:0048935 "peripheral
nervous system neuron development" evidence=TAS] [GO:0003677 "DNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IC]
[GO:0048666 "neuron development" evidence=TAS] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0043565
GO:GO:0008270 GO:GO:0045665 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 EMBL:CH471136 GO:GO:0031290
GO:GO:0048935 eggNOG:COG5576 GO:GO:0021520 HOVERGEN:HBG004671
KO:K09370 HOGENOM:HOG000236304 OrthoDB:EOG4G4GQR GO:GO:0021524
OMA:RHDSAVQ EMBL:AK001022 EMBL:BC011967 EMBL:BC012136
IPI:IPI00059240 RefSeq:NP_665804.1 UniGene:Hs.444677
ProteinModelPortal:Q96A47 SMR:Q96A47 STRING:Q96A47
PhosphoSite:Q96A47 DMDM:20978495 PRIDE:Q96A47 DNASU:64843
Ensembl:ENST00000290759 GeneID:64843 KEGG:hsa:64843 UCSC:uc002bbw.1
CTD:64843 GeneCards:GC15P076629 HGNC:HGNC:18524 MIM:609481
neXtProt:NX_Q96A47 PharmGKB:PA38566 InParanoid:Q96A47
PhylomeDB:Q96A47 GenomeRNAi:64843 NextBio:66950 Bgee:Q96A47
CleanEx:HS_ISL2 Genevestigator:Q96A47 GermOnline:ENSG00000159556
Uniprot:Q96A47
Length = 359
Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
Identities = 57/88 (64%), Positives = 70/88 (79%)
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
+E +Q+LDE CTCFVRDGKTYCKRDYVRLFG KC KC + F D VMRA++ +YH++CF
Sbjct: 56 AECSQYLDETCTCFVRDGKTYCKRDYVRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECF 115
Query: 124 CCVVCGKQLVPGDEFALREDGLFCKDDH 151
C VC +QL+PGDEF+LRE L C+ DH
Sbjct: 116 RCSVCSRQLLPGDEFSLREHELLCRADH 143
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 49/58 (84%), Positives = 55/58 (94%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
++CVGCG QIHDQ+ILRV+PDLEWHAACL+CAEC Q+LDE CTCFVRDGKTYCKRDYV
Sbjct: 25 AMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYV 82
>UNIPROTKB|H0YKY2 [details] [associations]
symbol:ISL2 "Insulin gene enhancer protein ISL-2"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0021520
"spinal cord motor neuron cell fate specification" evidence=IEA]
[GO:0021524 "visceral motor neuron differentiation" evidence=IEA]
[GO:0031290 "retinal ganglion cell axon guidance" evidence=IEA]
[GO:0045665 "negative regulation of neuron differentiation"
evidence=IEA] Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478
PROSITE:PS50023 SMART:SM00132 GO:GO:0046872 GO:GO:0008270
GO:GO:0045665 GO:GO:0005622 Gene3D:2.10.110.10 GO:GO:0031290
EMBL:AC027243 GO:GO:0021520 GO:GO:0021524 HGNC:HGNC:18524
Ensembl:ENST00000558437 Bgee:H0YKY2 Uniprot:H0YKY2
Length = 145
Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
Identities = 57/88 (64%), Positives = 70/88 (79%)
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
+E +Q+LDE CTCFVRDGKTYCKRDYVRLFG KC KC + F D VMRA++ +YH++CF
Sbjct: 31 AECSQYLDETCTCFVRDGKTYCKRDYVRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECF 90
Query: 124 CCVVCGKQLVPGDEFALREDGLFCKDDH 151
C VC +QL+PGDEF+LRE L C+ DH
Sbjct: 91 RCSVCSRQLLPGDEFSLREHELLCRADH 118
Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
Identities = 49/57 (85%), Positives = 54/57 (94%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+CVGCG QIHDQ+ILRV+PDLEWHAACL+CAEC Q+LDE CTCFVRDGKTYCKRDYV
Sbjct: 1 MCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYV 57
>ZFIN|ZDB-GENE-980526-562 [details] [associations]
symbol:isl2a "islet2a" species:7955 "Danio rerio"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0007409 "axonogenesis"
evidence=IGI;IMP] [GO:0048665 "neuron fate specification"
evidence=IGI;IMP] [GO:0048675 "axon extension" evidence=IMP]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
ZFIN:ZDB-GENE-980526-562 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0048665 GeneTree:ENSGT00700000104050
GO:GO:0048676 eggNOG:COG5576 HOVERGEN:HBG004671 KO:K09370
HOGENOM:HOG000236304 OrthoDB:EOG4G4GQR EMBL:D38453 EMBL:X88805
EMBL:U09403 IPI:IPI00483445 PIR:I51734 RefSeq:NP_571045.1
UniGene:Dr.281 ProteinModelPortal:P53406 SMR:P53406
Ensembl:ENSDART00000012862 GeneID:30157 KEGG:dre:30157 CTD:30157
InParanoid:P53406 OMA:RHDSAVQ NextBio:20806628 ArrayExpress:P53406
Bgee:P53406 Uniprot:P53406
Length = 359
Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
Identities = 56/88 (63%), Positives = 71/88 (80%)
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
+E +Q+LDE CTCFVRDGKTYCKRDYVRLFG KC KCN+ F D VMRA++ +YH++CF
Sbjct: 56 AECSQYLDETCTCFVRDGKTYCKRDYVRLFGIKCAKCNIGFCSSDLVMRARDNVYHMECF 115
Query: 124 CCVVCGKQLVPGDEFALREDGLFCKDDH 151
C VC + L+PGDEF+LR++ L C+ DH
Sbjct: 116 RCSVCSRHLLPGDEFSLRDEELLCRADH 143
Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
Identities = 51/62 (82%), Positives = 57/62 (91%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K +++CVGCG QIHDQYILRV+PDLEWHAACL+CAEC Q+LDE CTCFVRDGKTYCKRD
Sbjct: 21 KSGIAMCVGCGSQIHDQYILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRD 80
Query: 61 YV 62
YV
Sbjct: 81 YV 82
>MGI|MGI:109156 [details] [associations]
symbol:Isl2 "insulin related protein 2 (islet 2)"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0021520 "spinal cord motor neuron cell fate specification"
evidence=IGI] [GO:0021524 "visceral motor neuron differentiation"
evidence=IGI;IMP] [GO:0031290 "retinal ganglion cell axon guidance"
evidence=IMP] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0045665 "negative regulation of neuron
differentiation" evidence=IGI;IMP] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0048663 "neuron fate commitment"
evidence=IGI;IMP] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 MGI:MGI:109156
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0045665 GO:GO:0003700 EMBL:CH466522 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 GO:GO:0031290 eggNOG:COG5576
GO:GO:0021520 HOVERGEN:HBG004671 KO:K09370 HOGENOM:HOG000236304
OrthoDB:EOG4G4GQR GO:GO:0021524 OMA:RHDSAVQ CTD:64843 EMBL:AK013964
EMBL:AC116699 IPI:IPI00110854 RefSeq:NP_081673.2 UniGene:Mm.273996
PDB:3MMK PDBsum:3MMK ProteinModelPortal:Q9CXV0 STRING:Q9CXV0
PhosphoSite:Q9CXV0 PRIDE:Q9CXV0 DNASU:104360
Ensembl:ENSMUST00000034869 GeneID:104360 KEGG:mmu:104360
UCSC:uc009psm.1 InParanoid:Q9CXV0 NextBio:356992 CleanEx:MM_ISL2
Genevestigator:Q9CXV0 GermOnline:ENSMUSG00000032318 Uniprot:Q9CXV0
Length = 359
Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
Identities = 56/88 (63%), Positives = 70/88 (79%)
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
+E +Q+LDE CTCFVRDGKTYCKRDYVRLFG KC +C + F D VMRA++ +YH++CF
Sbjct: 56 AECSQYLDETCTCFVRDGKTYCKRDYVRLFGIKCAQCQVGFSSSDLVMRARDSVYHIECF 115
Query: 124 CCVVCGKQLVPGDEFALREDGLFCKDDH 151
C VC +QL+PGDEF+LRE L C+ DH
Sbjct: 116 RCSVCSRQLLPGDEFSLREHELLCRADH 143
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 49/58 (84%), Positives = 55/58 (94%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
++CVGCG QIHDQ+ILRV+PDLEWHAACL+CAEC Q+LDE CTCFVRDGKTYCKRDYV
Sbjct: 25 AMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYV 82
>RGD|621849 [details] [associations]
symbol:Isl2 "ISL LIM homeobox 2" species:10116 "Rattus
norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005622 "intracellular" evidence=ISO] [GO:0005634
"nucleus" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0021520 "spinal cord motor neuron cell fate specification"
evidence=IEA;ISO] [GO:0021524 "visceral motor neuron
differentiation" evidence=IEA;ISO] [GO:0031290 "retinal ganglion
cell axon guidance" evidence=IEA;ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0045665 "negative
regulation of neuron differentiation" evidence=IEA;ISO] [GO:0048663
"neuron fate commitment" evidence=ISO] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
RGD:621849 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0045665 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0031290 eggNOG:COG5576 GO:GO:0021520
HOVERGEN:HBG004671 KO:K09370 HOGENOM:HOG000236304 OrthoDB:EOG4G4GQR
GO:GO:0021524 CTD:64843 EMBL:L35571 IPI:IPI00198543 PIR:A55198
RefSeq:NP_065204.1 UniGene:Rn.10026 PDB:1BW5 PDBsum:1BW5
ProteinModelPortal:P50480 SMR:P50480 STRING:P50480 PRIDE:P50480
GeneID:57233 KEGG:rno:57233 UCSC:RGD:621849 InParanoid:P50480
EvolutionaryTrace:P50480 NextBio:611298 ArrayExpress:P50480
Genevestigator:P50480 GermOnline:ENSRNOG00000015336 Uniprot:P50480
Length = 360
Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
Identities = 56/88 (63%), Positives = 70/88 (79%)
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
+E +Q+LDE CTCFVRDGKTYCKRDYVRLFG KC +C + F D VMRA++ +YH++CF
Sbjct: 56 AECSQYLDETCTCFVRDGKTYCKRDYVRLFGIKCAQCQVGFSSSDLVMRARDSVYHIECF 115
Query: 124 CCVVCGKQLVPGDEFALREDGLFCKDDH 151
C VC +QL+PGDEF+LRE L C+ DH
Sbjct: 116 RCSVCSRQLLPGDEFSLREHELLCRADH 143
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 49/58 (84%), Positives = 55/58 (94%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
++CVGCG QIHDQ+ILRV+PDLEWHAACL+CAEC Q+LDE CTCFVRDGKTYCKRDYV
Sbjct: 25 AMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYV 82
>UNIPROTKB|P50480 [details] [associations]
symbol:Isl2 "Insulin gene enhancer protein ISL-2"
species:10116 "Rattus norvegicus" [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 RGD:621849 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0045665 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0031290 eggNOG:COG5576
GO:GO:0021520 HOVERGEN:HBG004671 KO:K09370 HOGENOM:HOG000236304
OrthoDB:EOG4G4GQR GO:GO:0021524 CTD:64843 EMBL:L35571
IPI:IPI00198543 PIR:A55198 RefSeq:NP_065204.1 UniGene:Rn.10026
PDB:1BW5 PDBsum:1BW5 ProteinModelPortal:P50480 SMR:P50480
STRING:P50480 PRIDE:P50480 GeneID:57233 KEGG:rno:57233
UCSC:RGD:621849 InParanoid:P50480 EvolutionaryTrace:P50480
NextBio:611298 ArrayExpress:P50480 Genevestigator:P50480
GermOnline:ENSRNOG00000015336 Uniprot:P50480
Length = 360
Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
Identities = 56/88 (63%), Positives = 70/88 (79%)
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
+E +Q+LDE CTCFVRDGKTYCKRDYVRLFG KC +C + F D VMRA++ +YH++CF
Sbjct: 56 AECSQYLDETCTCFVRDGKTYCKRDYVRLFGIKCAQCQVGFSSSDLVMRARDSVYHIECF 115
Query: 124 CCVVCGKQLVPGDEFALREDGLFCKDDH 151
C VC +QL+PGDEF+LRE L C+ DH
Sbjct: 116 RCSVCSRQLLPGDEFSLREHELLCRADH 143
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 49/58 (84%), Positives = 55/58 (94%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
++CVGCG QIHDQ+ILRV+PDLEWHAACL+CAEC Q+LDE CTCFVRDGKTYCKRDYV
Sbjct: 25 AMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYV 82
>UNIPROTKB|P53410 [details] [associations]
symbol:ISL2 "Insulin gene enhancer protein ISL-2"
species:9031 "Gallus gallus" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0007275 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 HOVERGEN:HBG004671 EMBL:L35568
IPI:IPI00574086 PIR:I50370 UniGene:Gga.790
ProteinModelPortal:P53410 SMR:P53410 Uniprot:P53410
Length = 319
Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
Identities = 52/88 (59%), Positives = 64/88 (72%)
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
+E Q LDE CTCF+RDGK YCKRDY RLFG KC +C F D VMRA++ +YH++CF
Sbjct: 19 AECGQPLDETCTCFLRDGKAYCKRDYGRLFGIKCAQCRAAFSSSDLVMRARDHVYHLECF 78
Query: 124 CCVVCGKQLVPGDEFALREDGLFCKDDH 151
C CG+QL+PGD+F LRE L C+ DH
Sbjct: 79 RCAACGRQLLPGDQFCLRERDLLCRADH 106
Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 34/44 (77%), Positives = 39/44 (88%)
Query: 18 YILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
++LRV+PDLEWH ACL+CAEC Q LDE CTCF+RDGK YCKRDY
Sbjct: 1 FLLRVSPDLEWHVACLKCAECGQPLDETCTCFLRDGKAYCKRDY 44
>UNIPROTKB|E1BWH2 [details] [associations]
symbol:E1BWH2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0001102 "RNA polymerase
II activating transcription factor binding" evidence=IEA]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=IEA] [GO:0001158 "enhancer sequence-specific DNA binding"
evidence=IEA] [GO:0001755 "neural crest cell migration"
evidence=IEA] [GO:0003139 "secondary heart field specification"
evidence=IEA] [GO:0003148 "outflow tract septum morphogenesis"
evidence=IEA] [GO:0003203 "endocardial cushion morphogenesis"
evidence=IEA] [GO:0003215 "cardiac right ventricle morphogenesis"
evidence=IEA] [GO:0003266 "regulation of secondary heart field
cardioblast proliferation" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010575 "positive regulation
vascular endothelial growth factor production" evidence=IEA]
[GO:0021520 "spinal cord motor neuron cell fate specification"
evidence=IEA] [GO:0021524 "visceral motor neuron differentiation"
evidence=IEA] [GO:0021559 "trigeminal nerve development"
evidence=IEA] [GO:0021983 "pituitary gland development"
evidence=IEA] [GO:0031016 "pancreas development" evidence=IEA]
[GO:0031290 "retinal ganglion cell axon guidance" evidence=IEA]
[GO:0032725 "positive regulation of granulocyte macrophage
colony-stimulating factor production" evidence=IEA] [GO:0032729
"positive regulation of interferon-gamma production" evidence=IEA]
[GO:0032730 "positive regulation of interleukin-1 alpha production"
evidence=IEA] [GO:0032731 "positive regulation of interleukin-1
beta production" evidence=IEA] [GO:0032735 "positive regulation of
interleukin-12 production" evidence=IEA] [GO:0032755 "positive
regulation of interleukin-6 production" evidence=IEA] [GO:0032760
"positive regulation of tumor necrosis factor production"
evidence=IEA] [GO:0042517 "positive regulation of tyrosine
phosphorylation of Stat3 protein" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0043425
"bHLH transcription factor binding" evidence=IEA] [GO:0043524
"negative regulation of neuron apoptotic process" evidence=IEA]
[GO:0045665 "negative regulation of neuron differentiation"
evidence=IEA] [GO:0045766 "positive regulation of angiogenesis"
evidence=IEA] [GO:0048880 "sensory system development"
evidence=IEA] [GO:0048936 "peripheral nervous system neuron
axonogenesis" evidence=IEA] [GO:0050728 "negative regulation of
inflammatory response" evidence=IEA] [GO:0055010 "ventricular
cardiac muscle tissue morphogenesis" evidence=IEA] [GO:0060037
"pharyngeal system development" evidence=IEA] [GO:0060379 "cardiac
muscle cell myoblast differentiation" evidence=IEA] [GO:0060384
"innervation" evidence=IEA] [GO:0060413 "atrial septum
morphogenesis" evidence=IEA] [GO:0060913 "cardiac cell fate
determination" evidence=IEA] [GO:0071657 "positive regulation of
granulocyte colony-stimulating factor production" evidence=IEA]
[GO:0090090 "negative regulation of canonical Wnt receptor
signaling pathway" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0046872 GO:GO:0008284 GO:GO:0008270 GO:GO:0043524
GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0000122 Gene3D:2.10.110.10 GO:GO:0090090 GO:GO:0001105
GO:GO:0001158 GO:GO:0042517 GeneTree:ENSGT00700000104050
GO:GO:0043388 GO:GO:0003266 IPI:IPI00598855 OMA:TDMGDMG
EMBL:AADN02072754 EMBL:AADN02072755 EMBL:AADN02072756
EMBL:AADN02072757 EMBL:AADN02072758 Ensembl:ENSGALT00000038907
ArrayExpress:E1BWH2 Uniprot:E1BWH2
Length = 339
Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
Identities = 51/58 (87%), Positives = 56/58 (96%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
SLCVGCG QIHDQYILRV+PDLEWHAACL+CAEC+Q+LDE CTCFVRDGKTYCKRDY+
Sbjct: 15 SLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDETCTCFVRDGKTYCKRDYI 72
Score = 170 (64.9 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 33/74 (44%), Positives = 45/74 (60%)
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
+E NQ+LDE CTCFVRDGKTYCKRDY+R T+ + + F++ + M + + CF
Sbjct: 46 AECNQYLDETCTCFVRDGKTYCKRDYIRKINTRAKMYSTGFEKLELRMTLR----YGPCF 101
Query: 124 CCVVCGKQLVPGDE 137
G + VPG E
Sbjct: 102 LMARSGPRAVPGGE 115
>UNIPROTKB|F1N959 [details] [associations]
symbol:F1N959 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 EMBL:AADN02072754 EMBL:AADN02072755
EMBL:AADN02072756 EMBL:AADN02072757 EMBL:AADN02072758
IPI:IPI00819883 Ensembl:ENSGALT00000024015 ArrayExpress:F1N959
Uniprot:F1N959
Length = 303
Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
Identities = 51/58 (87%), Positives = 56/58 (96%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
SLCVGCG QIHDQYILRV+PDLEWHAACL+CAEC+Q+LDE CTCFVRDGKTYCKRDY+
Sbjct: 1 SLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDETCTCFVRDGKTYCKRDYI 58
Score = 148 (57.2 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 28/45 (62%), Positives = 34/45 (75%)
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKRED 108
+E NQ+LDE CTCFVRDGKTYCKRDY+R C C +++KR D
Sbjct: 32 AECNQYLDETCTCFVRDGKTYCKRDYIRY--AIC--CLIHWKRND 72
>UNIPROTKB|H0YN25 [details] [associations]
symbol:ISL2 "Insulin gene enhancer protein ISL-2"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478
PROSITE:PS50023 SMART:SM00132 GO:GO:0046872 GO:GO:0008270
Gene3D:2.10.110.10 EMBL:AC027243 HGNC:HGNC:18524
ProteinModelPortal:H0YN25 SMR:H0YN25 Ensembl:ENST00000558656
Bgee:H0YN25 Uniprot:H0YN25
Length = 195
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 49/58 (84%), Positives = 55/58 (94%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
++CVGCG QIHDQ+ILRV+PDLEWHAACL+CAEC Q+LDE CTCFVRDGKTYCKRDYV
Sbjct: 25 AMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYV 82
Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 23/28 (82%), Positives = 26/28 (92%)
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVR 91
+E +Q+LDE CTCFVRDGKTYCKRDYVR
Sbjct: 56 AECSQYLDETCTCFVRDGKTYCKRDYVR 83
>ZFIN|ZDB-GENE-040624-1 [details] [associations]
symbol:isl1l "islet1, like" species:7955 "Danio
rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 ZFIN:ZDB-GENE-040624-1 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 HOVERGEN:HBG004671
HOGENOM:HOG000236304 eggNOG:NOG295777 EMBL:AY423019 IPI:IPI00495237
RefSeq:NP_001002043.1 UniGene:Dr.156646 ProteinModelPortal:Q6TEN0
SMR:Q6TEN0 GeneID:415131 KEGG:dre:415131 CTD:415131
NextBio:20818810 Uniprot:Q6TEN0
Length = 323
Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 50/98 (51%), Positives = 69/98 (70%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY--V 62
S CVGCG +I D++I+RV+PDLEWHA CL+CAECHQFLDE+CTCF+RDGKT+C+ Y +
Sbjct: 17 SFCVGCGLEILDRFIVRVSPDLEWHARCLKCAECHQFLDESCTCFIRDGKTFCREHYSRL 76
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKC 100
S+ K D+ F+ K + R V ++ +C +C
Sbjct: 77 STSKCAKCDK---AFI--SKEFVMRSQVNIYHVQCFRC 109
Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 46/88 (52%), Positives = 63/88 (71%)
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
+E +QFLDE+CTCF+RDGKT+C+ Y RL +KC KC+ F ++FVMR++ IYHVQCF
Sbjct: 48 AECHQFLDESCTCFIRDGKTFCREHYSRLSTSKCAKCDKAFISKEFVMRSQVNIYHVQCF 107
Query: 124 CCVVCGKQLVPGDEFALREDGLFCKDDH 151
C C + L+ GDE+ L++ L C D H
Sbjct: 108 RCEGCNRPLLSGDEYVLQDGQLLCTDHH 135
>UNIPROTKB|D6RAK3 [details] [associations]
symbol:ISL1 "Insulin gene enhancer protein ISL-1"
species:9606 "Homo sapiens" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 HGNC:HGNC:6132 EMBL:AC010478 IPI:IPI00966565
Ensembl:ENST00000505475 Bgee:D6RAK3 Uniprot:D6RAK3
Length = 260
Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
Identities = 39/65 (60%), Positives = 55/65 (84%)
Query: 92 LFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDH 151
L+G KC KC++ F + DFVMRA++K+YH++CF CV C +QL+PGDEFALREDGLFC+ DH
Sbjct: 10 LYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADH 69
Query: 152 EGMDK 156
+ +++
Sbjct: 70 DVVER 74
>WB|WBGene00002989 [details] [associations]
symbol:lim-7 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA;ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0060323 "head morphogenesis"
evidence=IMP] [GO:0007588 "excretion" evidence=IMP] [GO:0010171
"body morphogenesis" evidence=IMP] [GO:0035262 "gonad
morphogenesis" evidence=IMP] [GO:0060465 "pharynx development"
evidence=IMP] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0002119 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0040011 GO:GO:0007588
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GO:GO:0060465 GeneTree:ENSGT00700000104050 GO:GO:0035262
GO:GO:0060323 KO:K09370 HSSP:P50480 EMBL:U73946 EMBL:FO080336
PIR:T33049 RefSeq:NP_491668.1 UniGene:Cel.18382
ProteinModelPortal:G5EC36 SMR:G5EC36 IntAct:G5EC36
EnsemblMetazoa:C04F1.3 GeneID:172236 KEGG:cel:CELE_C04F1.3
CTD:172236 WormBase:C04F1.3 OMA:DEWDEER NextBio:874619
Uniprot:G5EC36
Length = 452
Score = 247 (92.0 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 41/87 (47%), Positives = 61/87 (70%)
Query: 70 LDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRA-KNKIYHVQCFCCVVC 128
LDEN T FV++G+TYC+ DY RLF T+C +C+ +F + D VMRA ++H+ CF CV C
Sbjct: 91 LDENQTAFVKNGQTYCRDDYRRLFTTRCSRCHGDFDKTDLVMRAGPQNVFHLNCFACVAC 150
Query: 129 GKQLVPGDEFALREDGLFCKDDHEGMD 155
K+L G+EF ++ + L+C+ D G+D
Sbjct: 151 EKRLQTGEEFQIKNNSLYCRSDCRGLD 177
Score = 189 (71.6 bits), Expect = 4.0e-14, P = 4.0e-14
Identities = 31/58 (53%), Positives = 45/58 (77%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+++C GC +I D+Y LRV P+LE+HA CL+C +C + LDEN T FV++G+TYC+ DY
Sbjct: 53 MAVCAGCRLEISDRYFLRVNPNLEFHAQCLKCVQCSRPLDENQTAFVKNGQTYCRDDY 110
>UNIPROTKB|F1MC25 [details] [associations]
symbol:LMX1A "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0071542
"dopaminergic neuron differentiation" evidence=IEA] [GO:0045665
"negative regulation of neuron differentiation" evidence=IEA]
[GO:0030901 "midbrain development" evidence=IEA] [GO:0021953
"central nervous system neuron differentiation" evidence=IEA]
[GO:0021549 "cerebellum development" evidence=IEA] [GO:0021542
"dentate gyrus development" evidence=IEA] [GO:0007411 "axon
guidance" evidence=IEA] [GO:0001558 "regulation of cell growth"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0007411 GO:GO:0001558 GO:GO:0046872 GO:GO:0071542
GO:GO:0043565 GO:GO:0008270 GO:GO:0045665 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0021549
GO:GO:0030901 GeneTree:ENSGT00700000104050 GO:GO:0021542
GO:GO:0021953 CTD:4009 KO:K09371 OMA:GNAGMEG EMBL:DAAA02006817
EMBL:DAAA02006818 EMBL:DAAA02006819 EMBL:DAAA02006820
EMBL:DAAA02006821 EMBL:DAAA02006822 IPI:IPI00701360
RefSeq:NP_001178254.1 UniGene:Bt.106456 Ensembl:ENSBTAT00000015947
GeneID:510296 KEGG:bta:510296 NextBio:20869365 Uniprot:F1MC25
Length = 382
Score = 240 (89.5 bits), Expect = 4.6e-20, P = 4.6e-20
Identities = 42/78 (53%), Positives = 50/78 (64%)
Query: 75 TCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVP 134
TCF RD K YCK DY +LF KC C +FVMRA+ +YH+ CFCC VC +QL
Sbjct: 72 TCFYRDKKLYCKYDYEKLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQK 131
Query: 135 GDEFALREDGLFCKDDHE 152
GDEF L+E L CK D+E
Sbjct: 132 GDEFVLKEGQLLCKGDYE 149
Score = 141 (54.7 bits), Expect = 4.8e-09, P = 4.8e-09
Identities = 27/57 (47%), Positives = 36/57 (63%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
S+C GC I D+++LR+ D WH C++CA C + L+ TCF RD K YCK DY
Sbjct: 33 SVCEGCQRVISDRFLLRLN-DSFWHEQCVQCASCKEPLET--TCFYRDKKLYCKYDY 86
>UNIPROTKB|F1PDJ1 [details] [associations]
symbol:LMX1A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 CTD:4009 KO:K09371 OMA:GNAGMEG
EMBL:AAEX03018391 EMBL:AAEX03018392 RefSeq:XP_851352.2
Ensembl:ENSCAFT00000021142 GeneID:609061 KEGG:cfa:609061
Uniprot:F1PDJ1
Length = 382
Score = 240 (89.5 bits), Expect = 4.6e-20, P = 4.6e-20
Identities = 42/78 (53%), Positives = 50/78 (64%)
Query: 75 TCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVP 134
TCF RD K YCK DY +LF KC C +FVMRA+ +YH+ CFCC VC +QL
Sbjct: 72 TCFYRDKKLYCKYDYEKLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQK 131
Query: 135 GDEFALREDGLFCKDDHE 152
GDEF L+E L CK D+E
Sbjct: 132 GDEFVLKEGQLLCKGDYE 149
Score = 141 (54.7 bits), Expect = 4.8e-09, P = 4.8e-09
Identities = 27/57 (47%), Positives = 36/57 (63%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
S+C GC I D+++LR+ D WH C++CA C + L+ TCF RD K YCK DY
Sbjct: 33 SVCEGCQRVISDRFLLRLN-DSFWHEQCVQCASCKEPLET--TCFYRDKKLYCKYDY 86
>UNIPROTKB|Q8TE12 [details] [associations]
symbol:LMX1A "LIM homeobox transcription factor 1-alpha"
species:9606 "Homo sapiens" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0001558 "regulation of cell growth" evidence=IEA]
[GO:0007411 "axon guidance" evidence=IEA] [GO:0021542 "dentate
gyrus development" evidence=IEA] [GO:0021549 "cerebellum
development" evidence=IEA] [GO:0021953 "central nervous system
neuron differentiation" evidence=IEA] [GO:0030901 "midbrain
development" evidence=IEA] [GO:0045665 "negative regulation of
neuron differentiation" evidence=IEA] [GO:0071542 "dopaminergic
neuron differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0007411 GO:GO:0001558
GO:GO:0046872 GO:GO:0071542 GO:GO:0043565 GO:GO:0008270
GO:GO:0045665 EMBL:CH471067 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0021549
GO:GO:0030901 GO:GO:0021542 HOGENOM:HOG000231629 GO:GO:0021953
EMBL:AY078398 EMBL:AY078391 EMBL:AY078392 EMBL:AY078393
EMBL:AY078394 EMBL:AY078395 EMBL:AY078396 EMBL:AY078397
EMBL:AK127724 EMBL:AL390730 EMBL:AL160058 EMBL:BC119743
EMBL:BC119744 IPI:IPI00152586 IPI:IPI00328299 RefSeq:NP_001167540.1
RefSeq:NP_796372.1 UniGene:Hs.667312 ProteinModelPortal:Q8TE12
SMR:Q8TE12 STRING:Q8TE12 PhosphoSite:Q8TE12 DMDM:27923801
PRIDE:Q8TE12 DNASU:4009 Ensembl:ENST00000294816
Ensembl:ENST00000342310 Ensembl:ENST00000367893 GeneID:4009
KEGG:hsa:4009 UCSC:uc001gcz.2 UCSC:uc021pdy.1 CTD:4009
GeneCards:GC01M165171 HGNC:HGNC:6653 HPA:HPA028051 HPA:HPA030088
MIM:600298 neXtProt:NX_Q8TE12 PharmGKB:PA30416 eggNOG:NOG243427
HOVERGEN:HBG052335 InParanoid:Q8TE12 KO:K09371 OMA:GNAGMEG
OrthoDB:EOG4QFWDN PhylomeDB:Q8TE12 GenomeRNAi:4009 NextBio:15724
ArrayExpress:Q8TE12 Bgee:Q8TE12 CleanEx:HS_LMX1A
Genevestigator:Q8TE12 GermOnline:ENSG00000162761 Uniprot:Q8TE12
Length = 382
Score = 240 (89.5 bits), Expect = 4.6e-20, P = 4.6e-20
Identities = 42/78 (53%), Positives = 50/78 (64%)
Query: 75 TCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVP 134
TCF RD K YCK DY +LF KC C +FVMRA+ +YH+ CFCC VC +QL
Sbjct: 72 TCFYRDKKLYCKYDYEKLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQK 131
Query: 135 GDEFALREDGLFCKDDHE 152
GDEF L+E L CK D+E
Sbjct: 132 GDEFVLKEGQLLCKGDYE 149
Score = 139 (54.0 bits), Expect = 8.0e-09, P = 8.0e-09
Identities = 27/57 (47%), Positives = 36/57 (63%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
S+C GC I D+++LR+ D WH C++CA C + L+ TCF RD K YCK DY
Sbjct: 33 SVCEGCQRVILDRFLLRLN-DSFWHEQCVQCASCKEPLET--TCFYRDKKLYCKYDY 86
>ZFIN|ZDB-GENE-050114-3 [details] [associations]
symbol:lmx1ba "LIM homeobox transcription factor 1,
beta a" species:7955 "Danio rerio" [GO:0043565 "sequence-specific
DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0030917
"midbrain-hindbrain boundary development" evidence=IGI] [GO:0030902
"hindbrain development" evidence=IMP] [GO:0021592 "fourth ventricle
development" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0061386 "closure of optic fissure" evidence=IGI]
[GO:0060041 "retina development in camera-type eye" evidence=IGI]
[GO:0002072 "optic cup morphogenesis involved in camera-type eye
development" evidence=IGI] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 ZFIN:ZDB-GENE-050114-3
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GO:GO:0060041 GeneTree:ENSGT00700000104050 GO:GO:0030917
GO:GO:0061386 HOGENOM:HOG000231629 GO:GO:0021592 HOVERGEN:HBG052335
EMBL:BX511196 EMBL:CABZ01060115 EMBL:CABZ01060116 EMBL:CABZ01060117
EMBL:CABZ01060118 EMBL:CABZ01060119 EMBL:CABZ01084097
EMBL:CABZ01084098 EMBL:CABZ01084099 EMBL:CABZ01084100 EMBL:AY551078
IPI:IPI00616332 UniGene:Dr.94065 Ensembl:ENSDART00000126544
Uniprot:Q4L1M5
Length = 375
Score = 235 (87.8 bits), Expect = 1.6e-19, P = 1.6e-19
Identities = 46/118 (38%), Positives = 62/118 (52%)
Query: 35 CAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFG 94
C CH+ + + + D + + S Q L +C+ RD K YCK DY +LF
Sbjct: 33 CEGCHRPISDRFLLRMNDSSWH-EECLQCSVCQQLL--TMSCYSRDHKLYCKHDYQQLFA 89
Query: 95 TKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHE 152
TKC C + VMRA +YH+ CFCC VC ++L GDEF L+E L CK D+E
Sbjct: 90 TKCSGCLEKISPTELVMRALESVYHLSCFCCCVCERRLCKGDEFVLKEGQLLCKTDYE 147
Score = 143 (55.4 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 26/57 (45%), Positives = 35/57 (61%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
S+C GC I D+++LR+ D WH CL+C+ C Q L +C+ RD K YCK DY
Sbjct: 31 SVCEGCHRPISDRFLLRMN-DSSWHEECLQCSVCQQLL--TMSCYSRDHKLYCKHDY 84
Score = 39 (18.8 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 78 VRDGKTYCKRDYVR 91
+++G+ CK DY R
Sbjct: 135 LKEGQLLCKTDYER 148
>UNIPROTKB|P53413 [details] [associations]
symbol:LMX1B "LIM/homeobox protein LMX-1.2" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0007275 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 HOGENOM:HOG000231629
eggNOG:NOG243427 HOVERGEN:HBG052335 KO:K09371 OrthoDB:EOG4QFWDN
EMBL:L39880 EMBL:U41823 IPI:IPI00599399 RefSeq:NP_990689.1
UniGene:Gga.758 ProteinModelPortal:P53413 STRING:P53413
GeneID:396312 KEGG:gga:396312 CTD:4010 InParanoid:P53413
NextBio:20816360 Uniprot:P53413
Length = 377
Score = 234 (87.4 bits), Expect = 2.1e-19, P = 2.1e-19
Identities = 52/125 (41%), Positives = 67/125 (53%)
Query: 36 AEC-HQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLD-ENC------TCFVRDGKTYCKR 87
+EC HQ + E C + D + R SS + L C +C+ RD K YCK+
Sbjct: 25 SECPHQAVCEGCQRPISD--RFLMRVNESSWHEECLQCAVCQQALTTSCYFRDRKLYCKQ 82
Query: 88 DYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFC 147
DY +LF KC C +FVMRA +YH+ CFCC VC +QL GDEF L+E L C
Sbjct: 83 DYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLSCFCCCVCERQLRKGDEFVLKEGQLLC 142
Query: 148 KDDHE 152
K D+E
Sbjct: 143 KSDYE 147
Score = 140 (54.3 bits), Expect = 6.0e-09, P = 6.0e-09
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
++C GC I D++++RV + WH CL+CA C Q L +C+ RD K YCK+DY
Sbjct: 31 AVCEGCQRPISDRFLMRVN-ESSWHEECLQCAVCQQAL--TTSCYFRDRKLYCKQDY 84
>UNIPROTKB|F1NDZ5 [details] [associations]
symbol:LMX1B "LIM/homeobox protein LMX-1.2" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0001764
"neuron migration" evidence=IEA] [GO:0002930 "trabecular meshwork
development" evidence=IEA] [GO:0008219 "cell death" evidence=IEA]
[GO:0008283 "cell proliferation" evidence=IEA] [GO:0009953
"dorsal/ventral pattern formation" evidence=IEA] [GO:0021587
"cerebellum morphogenesis" evidence=IEA] [GO:0021954 "central
nervous system neuron development" evidence=IEA] [GO:0030199
"collagen fibril organization" evidence=IEA] [GO:0030901 "midbrain
development" evidence=IEA] [GO:0035108 "limb morphogenesis"
evidence=IEA] [GO:0035265 "organ growth" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0071542 "dopaminergic neuron
differentiation" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0046872 GO:GO:0008283 GO:GO:0008219 GO:GO:0043565
GO:GO:0008270 GO:GO:0030199 GO:GO:0045944 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0035265
GeneTree:ENSGT00700000104050 IPI:IPI00599399 OMA:NRMEGMM
EMBL:AADN02026296 EMBL:AADN02026297 EMBL:AADN02026298
EMBL:AADN02031658 Ensembl:ENSGALT00000001376 Uniprot:F1NDZ5
Length = 377
Score = 233 (87.1 bits), Expect = 2.8e-19, P = 2.8e-19
Identities = 40/78 (51%), Positives = 50/78 (64%)
Query: 75 TCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVP 134
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFCC VC +QL
Sbjct: 70 SCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLSCFCCCVCERQLRK 129
Query: 135 GDEFALREDGLFCKDDHE 152
GDEF L+E L CK D+E
Sbjct: 130 GDEFVLKEGQLLCKSDYE 147
Score = 132 (51.5 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
++C GC I D++++RV + WH CL+CA C Q L +C+ RD K YCK+DY
Sbjct: 32 AVCEGCQRPI-DRFLMRVN-ESSWHEECLQCAVCQQAL--TTSCYFRDRKLYCKQDY 84
>MGI|MGI:1888519 [details] [associations]
symbol:Lmx1a "LIM homeobox transcription factor 1 alpha"
species:10090 "Mus musculus" [GO:0001558 "regulation of cell
growth" evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0007411 "axon guidance" evidence=IMP] [GO:0007417
"central nervous system development" evidence=IMP] [GO:0007420
"brain development" evidence=ISO] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0010468 "regulation of gene expression"
evidence=IMP] [GO:0021542 "dentate gyrus development" evidence=IMP]
[GO:0021549 "cerebellum development" evidence=IMP] [GO:0021766
"hippocampus development" evidence=IMP] [GO:0021953 "central
nervous system neuron differentiation" evidence=IMP] [GO:0030182
"neuron differentiation" evidence=IMP] [GO:0030901 "midbrain
development" evidence=IMP] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0045665 "negative regulation of neuron
differentiation" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0071542 "dopaminergic neuron differentiation"
evidence=IMP] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 MGI:MGI:1888519 GO:GO:0005634 GO:GO:0007411
GO:GO:0001558 GO:GO:0046872 GO:GO:0071542 GO:GO:0043565
GO:GO:0008270 GO:GO:0045665 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0021549
GO:GO:0030901 GO:GO:0010468 GeneTree:ENSGT00700000104050
GO:GO:0021542 HOGENOM:HOG000231629 GO:GO:0021953 CTD:4009
eggNOG:NOG243427 HOVERGEN:HBG052335 KO:K09371 OMA:GNAGMEG
OrthoDB:EOG4QFWDN EMBL:AF226662 IPI:IPI00123446 RefSeq:NP_387501.1
UniGene:Mm.330081 ProteinModelPortal:Q9JKU8 SMR:Q9JKU8
STRING:Q9JKU8 PhosphoSite:Q9JKU8 PRIDE:Q9JKU8
Ensembl:ENSMUST00000028003 Ensembl:ENSMUST00000111377 GeneID:110648
KEGG:mmu:110648 InParanoid:Q9JKU8 NextBio:364391 Bgee:Q9JKU8
CleanEx:MM_LMX1A Genevestigator:Q9JKU8
GermOnline:ENSMUSG00000026686 Uniprot:Q9JKU8
Length = 382
Score = 233 (87.1 bits), Expect = 3.0e-19, P = 3.0e-19
Identities = 41/78 (52%), Positives = 49/78 (62%)
Query: 75 TCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVP 134
TCF RD K YCK Y +LF KC C +FVMRA+ +YH+ CFCC VC +QL
Sbjct: 72 TCFYRDKKLYCKYHYEKLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQK 131
Query: 135 GDEFALREDGLFCKDDHE 152
GDEF L+E L CK D+E
Sbjct: 132 GDEFVLKEGQLLCKGDYE 149
Score = 134 (52.2 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 26/57 (45%), Positives = 35/57 (61%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
S+C GC I D+++LR+ D WH C++CA C + L+ TCF RD K YCK Y
Sbjct: 33 SVCEGCQRVISDRFLLRLN-DSFWHEQCVQCASCKEPLET--TCFYRDKKLYCKYHY 86
>RGD|1304784 [details] [associations]
symbol:Lmx1a "LIM homeobox transcription factor 1 alpha"
species:10116 "Rattus norvegicus" [GO:0001558 "regulation of cell
growth" evidence=IEA;ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0007411 "axon guidance" evidence=IEA;ISO]
[GO:0007417 "central nervous system development" evidence=ISO]
[GO:0007420 "brain development" evidence=IMP] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0010468 "regulation of gene expression"
evidence=ISO] [GO:0021542 "dentate gyrus development"
evidence=IEA;ISO] [GO:0021549 "cerebellum development"
evidence=IEA;ISO] [GO:0021766 "hippocampus development"
evidence=ISO] [GO:0021953 "central nervous system neuron
differentiation" evidence=IEA;ISO] [GO:0030182 "neuron
differentiation" evidence=ISO] [GO:0030901 "midbrain development"
evidence=IEA;ISO] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0045665 "negative regulation of neuron
differentiation" evidence=IEA;ISO] [GO:0071542 "dopaminergic neuron
differentiation" evidence=IEA;ISO] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 RGD:1304784
GO:GO:0005634 GO:GO:0007411 GO:GO:0007420 GO:GO:0001558
GO:GO:0046872 GO:GO:0071542 GO:GO:0043565 GO:GO:0008270
GO:GO:0045665 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0021549 GO:GO:0030901
GeneTree:ENSGT00700000104050 GO:GO:0021542 GO:GO:0021953 CTD:4009
KO:K09371 OMA:GNAGMEG IPI:IPI00869778 RefSeq:NP_001099437.2
UniGene:Rn.137284 Ensembl:ENSRNOT00000006163 GeneID:289201
KEGG:rno:289201 NextBio:629386 ArrayExpress:F1LRJ8 Uniprot:F1LRJ8
Length = 382
Score = 233 (87.1 bits), Expect = 3.0e-19, P = 3.0e-19
Identities = 41/78 (52%), Positives = 49/78 (62%)
Query: 75 TCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVP 134
TCF RD K YCK Y +LF KC C +FVMRA+ +YH+ CFCC VC +QL
Sbjct: 72 TCFYRDKKLYCKYHYEKLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQK 131
Query: 135 GDEFALREDGLFCKDDHE 152
GDEF L+E L CK D+E
Sbjct: 132 GDEFVLKEGQLLCKGDYE 149
Score = 134 (52.2 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 26/57 (45%), Positives = 35/57 (61%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
S+C GC I D+++LR+ D WH C++CA C + L+ TCF RD K YCK Y
Sbjct: 33 SVCEGCQRVISDRFLLRLN-DSFWHEQCVQCASCKEPLET--TCFYRDKKLYCKYHY 86
>UNIPROTKB|J9NU69 [details] [associations]
symbol:LMX1B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 OMA:NRMEGMM EMBL:AAEX03006872
EMBL:AAEX03006873 Ensembl:ENSCAFT00000044276 Uniprot:J9NU69
Length = 327
Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
Identities = 40/78 (51%), Positives = 50/78 (64%)
Query: 75 TCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVP 134
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFCC VC +QL
Sbjct: 25 SCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRK 84
Query: 135 GDEFALREDGLFCKDDHE 152
GDEF L+E L CK D+E
Sbjct: 85 GDEFVLKEGQLLCKGDYE 102
Score = 107 (42.7 bits), Expect = 0.00033, P = 0.00033
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 28 WHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
WH CL+CA C Q L +C+ RD K YCK+DY
Sbjct: 8 WHEECLQCAACQQAL--TTSCYFRDRKLYCKQDY 39
>MGI|MGI:1100513 [details] [associations]
symbol:Lmx1b "LIM homeobox transcription factor 1 beta"
species:10090 "Mus musculus" [GO:0001764 "neuron migration"
evidence=IMP] [GO:0002930 "trabecular meshwork development"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IDA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0008219 "cell death" evidence=IMP]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008283 "cell
proliferation" evidence=IMP] [GO:0010468 "regulation of gene
expression" evidence=IMP] [GO:0021587 "cerebellum morphogenesis"
evidence=IMP] [GO:0021954 "central nervous system neuron
development" evidence=IMP] [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0030199 "collagen fibril organization"
evidence=IMP] [GO:0030326 "embryonic limb morphogenesis"
evidence=NAS] [GO:0030901 "midbrain development" evidence=IMP]
[GO:0035108 "limb morphogenesis" evidence=IMP] [GO:0035265 "organ
growth" evidence=IMP] [GO:0043010 "camera-type eye development"
evidence=IMP] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IMP] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0071542 "dopaminergic neuron
differentiation" evidence=IMP] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 EMBL:AF078166
MGI:MGI:1100513 GO:GO:0005634 GO:GO:0001764 GO:GO:0046872
GO:GO:0008283 GO:GO:0008219 GO:GO:0071542 GO:GO:0043565
GO:GO:0008270 GO:GO:0030199 GO:GO:0045944 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GO:GO:0030326 GO:GO:0030901 GO:GO:0035265 EMBL:CH466542
GO:GO:0009953 GO:GO:0021954 GeneTree:ENSGT00700000104050
GO:GO:0021587 HOGENOM:HOG000231629 eggNOG:NOG243427
HOVERGEN:HBG052335 KO:K09371 OrthoDB:EOG4QFWDN CTD:4010
EMBL:AL929212 EMBL:BC119169 EMBL:BC125469 IPI:IPI00132794
RefSeq:NP_034855.2 UniGene:Mm.39825 ProteinModelPortal:O88609
SMR:O88609 STRING:O88609 PhosphoSite:O88609 PRIDE:O88609
Ensembl:ENSMUST00000041730 GeneID:16917 KEGG:mmu:16917
InParanoid:Q0VEN6 OMA:NRMEGMM NextBio:290964 Bgee:O88609
CleanEx:MM_LMX1B Genevestigator:O88609
GermOnline:ENSMUSG00000038765 GO:GO:0002930 Uniprot:O88609
Length = 372
Score = 230 (86.0 bits), Expect = 5.6e-19, P = 5.6e-19
Identities = 40/78 (51%), Positives = 50/78 (64%)
Query: 75 TCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVP 134
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFCC VC +QL
Sbjct: 70 SCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRK 129
Query: 135 GDEFALREDGLFCKDDHE 152
GDEF L+E L CK D+E
Sbjct: 130 GDEFVLKEGQLLCKGDYE 147
Score = 141 (54.7 bits), Expect = 4.6e-09, P = 4.6e-09
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
++C GC I D++++RV + WH CL+CA C Q L +C+ RD K YCK+DY
Sbjct: 31 AVCEGCQRPISDRFLMRVN-ESSWHEECLQCAACQQAL--TTSCYFRDRKLYCKQDY 84
>UNIPROTKB|G3V877 [details] [associations]
symbol:Lmx1b "LIM homeobox transcription factor 1 beta"
species:10116 "Rattus norvegicus" [GO:0001764 "neuron migration"
evidence=IEA] [GO:0002930 "trabecular meshwork development"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008219 "cell death" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IEA] [GO:0009953 "dorsal/ventral pattern formation"
evidence=IEA] [GO:0021587 "cerebellum morphogenesis" evidence=IEA]
[GO:0021954 "central nervous system neuron development"
evidence=IEA] [GO:0030199 "collagen fibril organization"
evidence=IEA] [GO:0030901 "midbrain development" evidence=IEA]
[GO:0035108 "limb morphogenesis" evidence=IEA] [GO:0035265 "organ
growth" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0071542
"dopaminergic neuron differentiation" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
RGD:620843 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 EMBL:CH474001 OMA:NRMEGMM
UniGene:Rn.92364 Ensembl:ENSRNOT00000022953 Uniprot:G3V877
Length = 372
Score = 230 (86.0 bits), Expect = 5.6e-19, P = 5.6e-19
Identities = 40/78 (51%), Positives = 50/78 (64%)
Query: 75 TCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVP 134
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFCC VC +QL
Sbjct: 70 SCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRK 129
Query: 135 GDEFALREDGLFCKDDHE 152
GDEF L+E L CK D+E
Sbjct: 130 GDEFVLKEGQLLCKGDYE 147
Score = 141 (54.7 bits), Expect = 4.6e-09, P = 4.6e-09
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
++C GC I D++++RV + WH CL+CA C Q L +C+ RD K YCK+DY
Sbjct: 31 AVCEGCQRPISDRFLMRVN-ESSWHEECLQCAACQQAL--TTSCYFRDRKLYCKQDY 84
>UNIPROTKB|O60663 [details] [associations]
symbol:LMX1B "LIM homeobox transcription factor 1-beta"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0001701 "in utero embryonic development" evidence=NAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0030182 "neuron differentiation" evidence=ISS] [GO:0007275
"multicellular organismal development" evidence=NAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0009953 "dorsal/ventral pattern formation" evidence=ISS]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0030182 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 EMBL:CH471090 GO:GO:0001701
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0009953 HOGENOM:HOG000231629
eggNOG:NOG243427 HOVERGEN:HBG052335 KO:K09371 OrthoDB:EOG4QFWDN
CTD:4010 EMBL:AF057135 EMBL:AF059575 EMBL:AF059572 EMBL:AF059573
EMBL:AF059574 EMBL:AL161908 EMBL:AL161731 EMBL:BC069601
EMBL:BC112120 EMBL:BC113491 IPI:IPI00030989 IPI:IPI00220363
RefSeq:NP_001167618.1 RefSeq:NP_002307.2 UniGene:Hs.129133
ProteinModelPortal:O60663 SMR:O60663 IntAct:O60663 STRING:O60663
PhosphoSite:O60663 PaxDb:O60663 PRIDE:O60663 DNASU:4010
Ensembl:ENST00000373474 Ensembl:ENST00000425646 GeneID:4010
KEGG:hsa:4010 UCSC:uc004bqj.3 GeneCards:GC09P129376 HGNC:HGNC:6654
MIM:161200 MIM:602575 neXtProt:NX_O60663 Orphanet:2614
PharmGKB:PA30417 InParanoid:O60663 PhylomeDB:O60663 GenomeRNAi:4010
NextBio:15732 ArrayExpress:O60663 Bgee:O60663 CleanEx:HS_LMX1B
Genevestigator:O60663 GermOnline:ENSG00000136944 Uniprot:O60663
Length = 379
Score = 230 (86.0 bits), Expect = 6.3e-19, P = 6.3e-19
Identities = 40/78 (51%), Positives = 50/78 (64%)
Query: 75 TCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVP 134
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFCC VC +QL
Sbjct: 70 SCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRK 129
Query: 135 GDEFALREDGLFCKDDHE 152
GDEF L+E L CK D+E
Sbjct: 130 GDEFVLKEGQLLCKGDYE 147
Score = 141 (54.7 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
++C GC I D++++RV + WH CL+CA C Q L +C+ RD K YCK+DY
Sbjct: 31 AVCEGCQRPISDRFLMRVN-ESSWHEECLQCAACQQAL--TTSCYFRDRKLYCKQDY 84
>UNIPROTKB|B7ZLH2 [details] [associations]
symbol:LMX1B "LMX1B protein" species:9606 "Homo sapiens"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0001764 "neuron migration" evidence=IEA]
[GO:0002930 "trabecular meshwork development" evidence=IEA]
[GO:0008219 "cell death" evidence=IEA] [GO:0008283 "cell
proliferation" evidence=IEA] [GO:0009953 "dorsal/ventral pattern
formation" evidence=IEA] [GO:0021587 "cerebellum morphogenesis"
evidence=IEA] [GO:0021954 "central nervous system neuron
development" evidence=IEA] [GO:0030199 "collagen fibril
organization" evidence=IEA] [GO:0030901 "midbrain development"
evidence=IEA] [GO:0035108 "limb morphogenesis" evidence=IEA]
[GO:0035265 "organ growth" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0071542 "dopaminergic neuron differentiation"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0001764 GO:GO:0046872 GO:GO:0008283
GO:GO:0008219 GO:GO:0071542 GO:GO:0043565 GO:GO:0008270
GO:GO:0030199 GO:GO:0045944 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0043010 Gene3D:2.10.110.10 GO:GO:0030901
GO:GO:0035265 GO:GO:0009953 GO:GO:0021954 GO:GO:0035108
GO:GO:0021587 HOGENOM:HOG000231629 HOVERGEN:HBG052335 KO:K09371
CTD:4010 EMBL:AL161908 EMBL:AL161731 UniGene:Hs.129133 DNASU:4010
GeneID:4010 KEGG:hsa:4010 HGNC:HGNC:6654 PharmGKB:PA30417
GenomeRNAi:4010 NextBio:15732 EMBL:BC143801 IPI:IPI00956472
RefSeq:NP_001167617.1 SMR:B7ZLH2 STRING:B7ZLH2
Ensembl:ENST00000561065 Uniprot:B7ZLH2
Length = 383
Score = 230 (86.0 bits), Expect = 6.7e-19, P = 6.7e-19
Identities = 40/78 (51%), Positives = 50/78 (64%)
Query: 75 TCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVP 134
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFCC VC +QL
Sbjct: 70 SCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRK 129
Query: 135 GDEFALREDGLFCKDDHE 152
GDEF L+E L CK D+E
Sbjct: 130 GDEFVLKEGQLLCKGDYE 147
Score = 141 (54.7 bits), Expect = 4.8e-09, P = 4.8e-09
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
++C GC I D++++RV + WH CL+CA C Q L +C+ RD K YCK+DY
Sbjct: 31 AVCEGCQRPISDRFLMRVN-ESSWHEECLQCAACQQAL--TTSCYFRDRKLYCKQDY 84
>UNIPROTKB|F8VYP0 [details] [associations]
symbol:LMX1B "LIM homeobox transcription factor 1-beta"
species:9606 "Homo sapiens" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 KO:K09371 CTD:4010 EMBL:AL161908 EMBL:AL161731
IPI:IPI00220363 RefSeq:NP_002307.2 UniGene:Hs.129133 DNASU:4010
GeneID:4010 KEGG:hsa:4010 HGNC:HGNC:6654 GenomeRNAi:4010
NextBio:15732 ProteinModelPortal:F8VYP0 SMR:F8VYP0 PRIDE:F8VYP0
Ensembl:ENST00000526117 UCSC:uc004bqi.3 ArrayExpress:F8VYP0
Bgee:F8VYP0 Uniprot:F8VYP0
Length = 395
Score = 230 (86.0 bits), Expect = 7.8e-19, P = 7.8e-19
Identities = 40/78 (51%), Positives = 50/78 (64%)
Query: 75 TCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVP 134
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFCC VC +QL
Sbjct: 93 SCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRK 152
Query: 135 GDEFALREDGLFCKDDHE 152
GDEF L+E L CK D+E
Sbjct: 153 GDEFVLKEGQLLCKGDYE 170
Score = 141 (54.7 bits), Expect = 5.1e-09, P = 5.1e-09
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
++C GC I D++++RV + WH CL+CA C Q L +C+ RD K YCK+DY
Sbjct: 54 AVCEGCQRPISDRFLMRVN-ESSWHEECLQCAACQQAL--TTSCYFRDRKLYCKQDY 107
>UNIPROTKB|F8W7W6 [details] [associations]
symbol:LMX1B "LIM homeobox transcription factor 1-beta"
species:9606 "Homo sapiens" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0001764 "neuron migration" evidence=IEA]
[GO:0002930 "trabecular meshwork development" evidence=IEA]
[GO:0008219 "cell death" evidence=IEA] [GO:0008283 "cell
proliferation" evidence=IEA] [GO:0009953 "dorsal/ventral pattern
formation" evidence=IEA] [GO:0021587 "cerebellum morphogenesis"
evidence=IEA] [GO:0021954 "central nervous system neuron
development" evidence=IEA] [GO:0030199 "collagen fibril
organization" evidence=IEA] [GO:0030901 "midbrain development"
evidence=IEA] [GO:0035108 "limb morphogenesis" evidence=IEA]
[GO:0035265 "organ growth" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0071542 "dopaminergic neuron differentiation"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0001764 GO:GO:0046872 GO:GO:0008283
GO:GO:0008219 GO:GO:0071542 GO:GO:0043565 GO:GO:0008270
GO:GO:0030199 GO:GO:0045944 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0043010 Gene3D:2.10.110.10 GO:GO:0030901
GO:GO:0035265 GO:GO:0009953 GO:GO:0021954 GO:GO:0035108
GO:GO:0021587 KO:K09371 CTD:4010 EMBL:AL161908 EMBL:AL161731
UniGene:Hs.129133 DNASU:4010 GeneID:4010 KEGG:hsa:4010
HGNC:HGNC:6654 GenomeRNAi:4010 NextBio:15732 OMA:NRMEGMM
IPI:IPI00956472 RefSeq:NP_001167617.1 ProteinModelPortal:F8W7W6
SMR:F8W7W6 Ensembl:ENST00000355497 UCSC:uc011maa.2
ArrayExpress:F8W7W6 Bgee:F8W7W6 Uniprot:F8W7W6
Length = 406
Score = 230 (86.0 bits), Expect = 8.8e-19, P = 8.8e-19
Identities = 40/78 (51%), Positives = 50/78 (64%)
Query: 75 TCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVP 134
+C+ RD K YCK+DY +LF KC C +FVMRA +YH+ CFCC VC +QL
Sbjct: 93 SCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRK 152
Query: 135 GDEFALREDGLFCKDDHE 152
GDEF L+E L CK D+E
Sbjct: 153 GDEFVLKEGQLLCKGDYE 170
Score = 141 (54.7 bits), Expect = 5.4e-09, P = 5.4e-09
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
++C GC I D++++RV + WH CL+CA C Q L +C+ RD K YCK+DY
Sbjct: 54 AVCEGCQRPISDRFLMRVN-ESSWHEECLQCAACQQAL--TTSCYFRDRKLYCKQDY 107
>ZFIN|ZDB-GENE-050114-2 [details] [associations]
symbol:lmx1bb "LIM homeobox transcription factor 1,
beta b" species:7955 "Danio rerio" [GO:0043565 "sequence-specific
DNA binding" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0030917
"midbrain-hindbrain boundary development" evidence=IGI] [GO:0042472
"inner ear morphogenesis" evidence=IMP] [GO:0021592 "fourth
ventricle development" evidence=IGI] [GO:0060117 "auditory receptor
cell development" evidence=IMP] [GO:0032474 "otolith morphogenesis"
evidence=IMP] [GO:0048752 "semicircular canal morphogenesis"
evidence=IMP] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0002072 "optic cup morphogenesis involved in camera-type eye
development" evidence=IGI] [GO:0061386 "closure of optic fissure"
evidence=IGI] [GO:0060041 "retina development in camera-type eye"
evidence=IGI] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 ZFIN:ZDB-GENE-050114-2 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0060041 GO:GO:0032474
GO:GO:0048752 GO:GO:0030917 GO:GO:0060117 GO:GO:0061386
GO:GO:0021592 HOVERGEN:HBG052335 KO:K09371 EMBL:AY894989
IPI:IPI00631669 RefSeq:NP_001020338.2 UniGene:Dr.108678
ProteinModelPortal:Q4VJ29 STRING:Q4VJ29 GeneID:554360
KEGG:dre:554360 CTD:554360 InParanoid:Q4VJ29 NextBio:20880753
Uniprot:Q4VJ29
Length = 375
Score = 228 (85.3 bits), Expect = 9.9e-19, P = 9.9e-19
Identities = 39/78 (50%), Positives = 50/78 (64%)
Query: 75 TCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVP 134
+C+ R+ K YCK DY +LF TKC C +FVMRA +YH+ CFCC VC +QL
Sbjct: 70 SCYFRERKLYCKYDYQQLFATKCSGCLEKIAPTEFVMRALECVYHLNCFCCCVCDRQLRK 129
Query: 135 GDEFALREDGLFCKDDHE 152
GDEF L++ L CK D+E
Sbjct: 130 GDEFVLKDGQLLCKSDYE 147
Score = 131 (51.2 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 24/57 (42%), Positives = 35/57 (61%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
++C GC I D++++RV + WH CL+CA C Q L +C+ R+ K YCK DY
Sbjct: 31 AVCEGCQRPISDRFLMRVN-ESSWHEECLQCAVCQQPL--TTSCYFRERKLYCKYDY 84
Score = 43 (20.2 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 78 VRDGKTYCKRDYVR 91
++DG+ CK DY R
Sbjct: 135 LKDGQLLCKSDYER 148
>UNIPROTKB|Q8UVR3 [details] [associations]
symbol:lmx1b.1 "LIM homeobox transcription factor 1-beta.1"
species:8355 "Xenopus laevis" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0039020 "pronephric nephron tubule development"
evidence=IMP] [GO:0072013 "glomus development" evidence=IEP;IMP]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0030182 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0072013
GO:GO:0039020 HOVERGEN:HBG052335 KO:K09371 EMBL:AF414086
RefSeq:NP_001083902.1 UniGene:Xl.12464 HSSP:P50480
ProteinModelPortal:Q8UVR3 GeneID:399182 KEGG:xla:399182 CTD:399182
Xenbase:XB-GENE-494754 Uniprot:Q8UVR3
Length = 400
Score = 229 (85.7 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 39/78 (50%), Positives = 50/78 (64%)
Query: 75 TCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVP 134
+C+ RD K +CK+DY +LF KC C +FVMRA +YH+ CFCC VC +QL
Sbjct: 93 SCYFRDRKLFCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLSCFCCCVCERQLRK 152
Query: 135 GDEFALREDGLFCKDDHE 152
GDEF L+E L CK D+E
Sbjct: 153 GDEFVLKEGQLLCKSDYE 170
Score = 131 (51.2 bits), Expect = 6.4e-08, P = 6.4e-08
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
++C GC I D++++RV + WH CL+C C Q L +C+ RD K +CK+DY
Sbjct: 54 AVCEGCQRPISDRFLMRVN-EASWHEECLQCTVCQQPL--TTSCYFRDRKLFCKQDY 107
>UNIPROTKB|F1S681 [details] [associations]
symbol:LHX4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0021526 "medial
motor column neuron differentiation" evidence=IEA] [GO:0009887
"organ morphogenesis" evidence=IEA] [GO:0008045 "motor neuron axon
guidance" evidence=IEA] [GO:0001890 "placenta development"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009887 Gene3D:2.10.110.10
GO:GO:0008045 GeneTree:ENSGT00700000104177 GO:GO:0021526
OMA:LSFRDDQ EMBL:CU855640 EMBL:FP476046 Ensembl:ENSSSCT00000016925
Uniprot:F1S681
Length = 369
Score = 227 (85.0 bits), Expect = 1.2e-18, P = 1.2e-18
Identities = 45/120 (37%), Positives = 64/120 (53%)
Query: 34 RCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLF 93
+CA C+Q + + V D + + + Q D CF R G YCK D+ + F
Sbjct: 8 QCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADR---CFSRAGSVYCKEDFFKRF 64
Query: 94 GTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDG-LFCKDDHE 152
GTKC C V +A++ +YH+ CF C++C +QL GDEF L EDG L CK+D+E
Sbjct: 65 GTKCTACQQGIPPTQVVRKAQDFVYHLPCFACIICNRQLATGDEFYLMEDGRLVCKEDYE 124
Score = 143 (55.4 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 25/55 (45%), Positives = 34/55 (61%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
C GC I D++IL+V D WH++CL+CA+C L + C F R G YCK D+
Sbjct: 9 CAGCNQHILDKFILKVL-DRHWHSSCLKCADCQMQLADRC--FSRAGSVYCKEDF 60
>UNIPROTKB|F1MFM7 [details] [associations]
symbol:LHX4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0021526 "medial
motor column neuron differentiation" evidence=IEA] [GO:0009887
"organ morphogenesis" evidence=IEA] [GO:0008045 "motor neuron axon
guidance" evidence=IEA] [GO:0001890 "placenta development"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009887 Gene3D:2.10.110.10
GO:GO:0008045 GeneTree:ENSGT00700000104177 KO:K09374 GO:GO:0021526
CTD:89884 OMA:LSFRDDQ EMBL:DAAA02043487 EMBL:DAAA02043488
EMBL:DAAA02043489 EMBL:DAAA02043490 IPI:IPI00695061
RefSeq:NP_001179714.1 UniGene:Bt.60930 Ensembl:ENSBTAT00000005216
GeneID:540797 KEGG:bta:540797 NextBio:20878839 Uniprot:F1MFM7
Length = 390
Score = 228 (85.3 bits), Expect = 1.2e-18, P = 1.2e-18
Identities = 45/120 (37%), Positives = 64/120 (53%)
Query: 34 RCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLF 93
+CA C+Q + + V D + + + Q D CF R G YCK D+ + F
Sbjct: 29 QCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADR---CFSRAGSVYCKEDFFKRF 85
Query: 94 GTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDG-LFCKDDHE 152
GTKC C V +A++ +YH+ CF C++C +QL GDEF L EDG L CK+D+E
Sbjct: 86 GTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYE 145
Score = 144 (55.7 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 25/60 (41%), Positives = 37/60 (61%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+++ C GC I D++IL+V D WH++CL+CA+C L + C F R G YCK D+
Sbjct: 25 QQIPQCAGCNQHILDKFILKVL-DRHWHSSCLKCADCQMQLADRC--FSRAGSVYCKEDF 81
>UNIPROTKB|Q969G2 [details] [associations]
symbol:LHX4 "LIM/homeobox protein Lhx4" species:9606 "Homo
sapiens" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0001890 "placenta development" evidence=IEA]
[GO:0008045 "motor neuron axon guidance" evidence=IEA] [GO:0009887
"organ morphogenesis" evidence=IEA] [GO:0021526 "medial motor
column neuron differentiation" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009887
Gene3D:2.10.110.10 GO:GO:0008045 EMBL:AL139141 Orphanet:226307
Orphanet:95496 eggNOG:NOG275246 HOGENOM:HOG000231629 KO:K09374
HOVERGEN:HBG006263 OrthoDB:EOG4SBDZ0 GO:GO:0021526 EMBL:AY053457
EMBL:AF179849 EMBL:AF405430 EMBL:AF405425 EMBL:AF405426
EMBL:AF405427 EMBL:AF405428 EMBL:AF405429 EMBL:BC011759
EMBL:AB055703 EMBL:AB037683 EMBL:AF282899 EMBL:AH011598
IPI:IPI00169275 RefSeq:NP_203129.1 UniGene:Hs.658487
ProteinModelPortal:Q969G2 SMR:Q969G2 IntAct:Q969G2 STRING:Q969G2
DMDM:209572644 PRIDE:Q969G2 DNASU:89884 Ensembl:ENST00000263726
GeneID:89884 KEGG:hsa:89884 UCSC:uc001goe.2 CTD:89884
GeneCards:GC01P180199 HGNC:HGNC:21734 MIM:262700 MIM:602146
neXtProt:NX_Q969G2 Orphanet:85442 PharmGKB:PA134962876
InParanoid:Q969G2 OMA:LSFRDDQ PhylomeDB:Q969G2 GenomeRNAi:89884
NextBio:76401 ArrayExpress:Q969G2 Bgee:Q969G2 CleanEx:HS_LHX4
Genevestigator:Q969G2 GermOnline:ENSG00000121454 Uniprot:Q969G2
Length = 390
Score = 228 (85.3 bits), Expect = 1.2e-18, P = 1.2e-18
Identities = 45/120 (37%), Positives = 64/120 (53%)
Query: 34 RCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLF 93
+CA C+Q + + V D + + + Q D CF R G YCK D+ + F
Sbjct: 29 QCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADR---CFSRAGSVYCKEDFFKRF 85
Query: 94 GTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDG-LFCKDDHE 152
GTKC C V +A++ +YH+ CF C++C +QL GDEF L EDG L CK+D+E
Sbjct: 86 GTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYE 145
Score = 144 (55.7 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 25/60 (41%), Positives = 37/60 (61%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+++ C GC I D++IL+V D WH++CL+CA+C L + C F R G YCK D+
Sbjct: 25 QQIPQCAGCNQHILDKFILKVL-DRHWHSSCLKCADCQMQLADRC--FSRAGSVYCKEDF 81
>MGI|MGI:101776 [details] [associations]
symbol:Lhx4 "LIM homeobox protein 4" species:10090 "Mus
musculus" [GO:0001890 "placenta development" evidence=IGI]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IDA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008045 "motor neuron axon
guidance" evidence=IGI] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009887 "organ morphogenesis" evidence=IMP]
[GO:0021526 "medial motor column neuron differentiation"
evidence=IGI] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 MGI:MGI:101776 GO:GO:0005634 GO:GO:0043066
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0009887 Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0001890
eggNOG:NOG275246 GeneTree:ENSGT00700000104177 HOGENOM:HOG000231629
KO:K09374 PDB:3MMK PDBsum:3MMK HOVERGEN:HBG006263 OrthoDB:EOG4SBDZ0
GO:GO:0021526 CTD:89884 OMA:LSFRDDQ EMBL:BC049834 EMBL:AF135415
EMBL:U89343 EMBL:S71659 IPI:IPI00134772 PIR:S46332
RefSeq:NP_034842.2 UniGene:Mm.103624 UniGene:Mm.351266
ProteinModelPortal:P53776 SMR:P53776 STRING:P53776 PRIDE:P53776
Ensembl:ENSMUST00000027740 GeneID:16872 KEGG:mmu:16872
UCSC:uc007dbn.2 InParanoid:P53776 NextBio:290842 Bgee:P53776
CleanEx:MM_LHX4 Genevestigator:P53776 GermOnline:ENSMUSG00000026468
Uniprot:P53776
Length = 390
Score = 228 (85.3 bits), Expect = 1.2e-18, P = 1.2e-18
Identities = 45/120 (37%), Positives = 64/120 (53%)
Query: 34 RCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLF 93
+CA C+Q + + V D + + + Q D CF R G YCK D+ + F
Sbjct: 29 QCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADR---CFSRAGSVYCKEDFFKRF 85
Query: 94 GTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDG-LFCKDDHE 152
GTKC C V +A++ +YH+ CF C++C +QL GDEF L EDG L CK+D+E
Sbjct: 86 GTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYE 145
Score = 144 (55.7 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 25/60 (41%), Positives = 37/60 (61%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+++ C GC I D++IL+V D WH++CL+CA+C L + C F R G YCK D+
Sbjct: 25 QQIPQCAGCNQHILDKFILKVL-DRHWHSSCLKCADCQMQLADRC--FSRAGSVYCKEDF 81
>UNIPROTKB|F1PCI5 [details] [associations]
symbol:LHX4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043066
"negative regulation of apoptotic process" evidence=IEA]
[GO:0021526 "medial motor column neuron differentiation"
evidence=IEA] [GO:0009887 "organ morphogenesis" evidence=IEA]
[GO:0008045 "motor neuron axon guidance" evidence=IEA] [GO:0001890
"placenta development" evidence=IEA] [GO:0043565 "sequence-specific
DNA binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009887
Gene3D:2.10.110.10 GO:GO:0008045 GeneTree:ENSGT00700000104177
GO:GO:0021526 OMA:LSFRDDQ EMBL:AAEX03005118 EMBL:AAEX03005119
Ensembl:ENSCAFT00000031328 Uniprot:F1PCI5
Length = 395
Score = 228 (85.3 bits), Expect = 1.3e-18, P = 1.3e-18
Identities = 45/120 (37%), Positives = 64/120 (53%)
Query: 34 RCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLF 93
+CA C+Q + + V D + + + Q D CF R G YCK D+ + F
Sbjct: 34 QCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADR---CFSRAGSVYCKEDFFKRF 90
Query: 94 GTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDG-LFCKDDHE 152
GTKC C V +A++ +YH+ CF C++C +QL GDEF L EDG L CK+D+E
Sbjct: 91 GTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYE 150
Score = 143 (55.4 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 25/55 (45%), Positives = 34/55 (61%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
C GC I D++IL+V D WH++CL+CA+C L + C F R G YCK D+
Sbjct: 35 CAGCNQHILDKFILKVL-DRHWHSSCLKCADCQMQLADRC--FSRAGSVYCKEDF 86
>UNIPROTKB|H9L2C7 [details] [associations]
symbol:LHX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0001890
"placenta development" evidence=IEA] [GO:0008045 "motor neuron axon
guidance" evidence=IEA] [GO:0009887 "organ morphogenesis"
evidence=IEA] [GO:0021526 "medial motor column neuron
differentiation" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104177 EMBL:AADN02073379 EMBL:AADN02073380
Ensembl:ENSGALT00000035845 OMA:ERSWHSK Uniprot:H9L2C7
Length = 237
Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 37/78 (47%), Positives = 49/78 (62%)
Query: 76 CFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPG 135
CF R G YCK D+ + FGTKC C V +A++ +YH+ CF C++C +QL G
Sbjct: 43 CFARAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICSRQLATG 102
Query: 136 DEFALREDG-LFCKDDHE 152
DEF L EDG L CK+D+E
Sbjct: 103 DEFYLMEDGRLVCKEDYE 120
Score = 148 (57.2 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 26/55 (47%), Positives = 34/55 (61%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
C GC I D++IL+V D WH++CL+CA+C L E C F R G YCK D+
Sbjct: 5 CAGCSQHILDKFILKVL-DRHWHSSCLKCADCQMQLAERC--FARAGSVYCKEDF 56
>ZFIN|ZDB-GENE-041014-332 [details] [associations]
symbol:lmx1a "LIM homeobox transcription factor 1,
alpha" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
ZFIN:ZDB-GENE-041014-332 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GeneTree:ENSGT00700000104050
HOGENOM:HOG000231629 CTD:4009 HOVERGEN:HBG052335 EMBL:BX296562
IPI:IPI00496510 RefSeq:NP_001020669.1 UniGene:Dr.108111
Ensembl:ENSDART00000019059 GeneID:558036 KEGG:dre:558036
eggNOG:NOG302270 InParanoid:Q5RI65 OMA:RLYSMQD OrthoDB:EOG4P8FJW
NextBio:20882278 Uniprot:Q5RI65
Length = 366
Score = 225 (84.3 bits), Expect = 1.9e-18, P = 1.9e-18
Identities = 48/136 (35%), Positives = 76/136 (55%)
Query: 13 QIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDE 72
Q+ D ++ V D+ W + C C++ + + V+DG + + + +S + D
Sbjct: 9 QMDDTFV--VFADM-WRKSV--CEGCNELIRDRYLLRVQDGLWHERCLHCASCREPLKD- 62
Query: 73 NCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNK-IYHVQCFCCVVCGKQ 131
TCF+R+ YCKRDY +LF +C+ C+ + VMRA+ ++H++CFCC VCG +
Sbjct: 63 --TCFLRNKTLYCKRDYQKLFVVRCQGCSEIISPSELVMRAQGSAVFHLRCFCCCVCGCR 120
Query: 132 LVPGDEFALREDGLFC 147
L GD LR DGLFC
Sbjct: 121 LQKGDHCVLRGDGLFC 136
Score = 157 (60.3 bits), Expect = 7.8e-11, P = 7.8e-11
Identities = 30/59 (50%), Positives = 37/59 (62%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
R S+C GC I D+Y+LRV L WH CL CA C + L + TCF+R+ YCKRDY
Sbjct: 22 RKSVCEGCNELIRDRYLLRVQDGL-WHERCLHCASCREPLKD--TCFLRNKTLYCKRDY 77
>ZFIN|ZDB-GENE-060728-1 [details] [associations]
symbol:lhx4 "LIM homeobox 4" species:7955 "Danio
rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 ZFIN:ZDB-GENE-060728-1 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GeneTree:ENSGT00700000104177
HOGENOM:HOG000231629 KO:K09374 HOVERGEN:HBG006263 CTD:89884
OMA:LSFRDDQ EMBL:BX294388 EMBL:CR381643 EMBL:CT025732
IPI:IPI00616255 RefSeq:NP_001116445.1 UniGene:Dr.92005
Ensembl:ENSDART00000057644 GeneID:571943 KEGG:dre:571943
NextBio:20890768 Uniprot:B0S5S7
Length = 391
Score = 225 (84.3 bits), Expect = 2.7e-18, P = 2.7e-18
Identities = 46/120 (38%), Positives = 65/120 (54%)
Query: 34 RCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLF 93
+CA C Q + + V D + K ++ + L + C F R G YCK D+ + F
Sbjct: 32 QCAGCSQHILDKFILKVLDRHWHSKC-LKCADCHALLADKC--FSRAGNVYCKEDFFKRF 88
Query: 94 GTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDG-LFCKDDHE 152
GTKC C V +A++ +YH+ CF CV+C +QL GDEF L EDG L CK+D+E
Sbjct: 89 GTKCASCQQGIPPTQVVRKAQDFVYHLHCFACVMCSRQLATGDEFYLMEDGRLVCKEDYE 148
Score = 152 (58.6 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 26/60 (43%), Positives = 37/60 (61%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+++ C GC I D++IL+V D WH+ CL+CA+CH L + C F R G YCK D+
Sbjct: 28 QQIPQCAGCSQHILDKFILKVL-DRHWHSKCLKCADCHALLADKC--FSRAGNVYCKEDF 84
>UNIPROTKB|A2I8Z7 [details] [associations]
symbol:lhx9 "LIM/homeobox protein Lhx9" species:223369
"Astyanax fasciatus" [GO:0003714 "transcription corepressor
activity" evidence=ISS] [GO:0008045 "motor neuron axon guidance"
evidence=ISS] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=ISS] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0003714 GO:GO:0045892 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0008045 HOVERGEN:HBG006262 EMBL:EF175738
ProteinModelPortal:A2I8Z7 Uniprot:A2I8Z7
Length = 377
Score = 224 (83.9 bits), Expect = 3.0e-18, P = 3.0e-18
Identities = 42/121 (34%), Positives = 61/121 (50%)
Query: 35 CAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFG 94
CA C + + D K + R E L+ TCF +DG YCK DY R F
Sbjct: 52 CAGCGSKISDRYYLLAVD-KQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFS 110
Query: 95 T-KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEG 153
+C +C+L + VMRA++ +YH+ CF C C K L GD F +RE+ ++C+ E
Sbjct: 111 VQRCARCHLGISASEMVMRARDSVYHLSCFTCTSCNKTLTTGDHFGMRENLVYCRAHFES 170
Query: 154 M 154
+
Sbjct: 171 L 171
Score = 193 (73.0 bits), Expect = 9.0e-15, P = 9.0e-15
Identities = 52/146 (35%), Positives = 69/146 (47%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
+LC GCG +I D+Y L +A D +WH CL+C EC L+ TCF +DG YCK DY
Sbjct: 50 ALCAGCGSKISDRYYL-LAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRR 108
Query: 65 EKNQFLDENCTCFVRDGKTYCK-RDYV-RLFGTKCEKCNLNFKRED-FVMRAKNKIYHVQ 121
Q C + + + RD V L C CN D F MR +N +Y
Sbjct: 109 FSVQRC-ARCHLGISASEMVMRARDSVYHLSCFTCTSCNKTLTTGDHFGMR-ENLVYCRA 166
Query: 122 CFCCVVCGKQLVPGD--EFALREDGL 145
F +V G+ P + E A + GL
Sbjct: 167 HFESLVQGEYHAPLNYAELAAKGGGL 192
>UNIPROTKB|P37137 [details] [associations]
symbol:lhx5 "LIM/homeobox protein Lhx5" species:8355
"Xenopus laevis" [GO:0005515 "protein binding" evidence=IPI]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0007275 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
HOVERGEN:HBG006263 KO:K09372 CTD:64211 EMBL:L42546 EMBL:BC084744
EMBL:Z11587 PIR:S23803 RefSeq:NP_001084038.1 UniGene:Xl.1047
ProteinModelPortal:P37137 SMR:P37137 GeneID:399270 KEGG:xla:399270
Xenbase:XB-GENE-865965 Uniprot:P37137
Length = 402
Score = 225 (84.3 bits), Expect = 3.1e-18, P = 3.1e-18
Identities = 37/77 (48%), Positives = 52/77 (67%)
Query: 76 CFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPG 135
CF R+GK YCK D+ R FGTKC C+L D V +A+NK++H+ CF C+VC KQL G
Sbjct: 43 CFSREGKLYCKTDFFRRFGTKCAGCSLGISPSDLVRKARNKVFHLNCFTCMVCNKQLSTG 102
Query: 136 DEFALREDGLF-CKDDH 151
+E + ++ F CK+D+
Sbjct: 103 EELYIIDENKFVCKEDY 119
Score = 134 (52.2 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
C GC I D+++L V D WH C++C EC L E C F R+GK YCK D+
Sbjct: 5 CAGCERPILDRFLLNVL-DRAWHVKCVQCCECKCNLTEKC--FSREGKLYCKTDF 56
>UNIPROTKB|F6QGM2 [details] [associations]
symbol:LHX3 "LIM/homeobox protein Lhx3" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0000988 "protein binding transcription factor
activity" evidence=IEA] [GO:0001890 "placenta development"
evidence=IEA] [GO:0005667 "transcription factor complex"
evidence=IEA] [GO:0008045 "motor neuron axon guidance"
evidence=IEA] [GO:0021520 "spinal cord motor neuron cell fate
specification" evidence=IEA] [GO:0021521 "ventral spinal cord
interneuron specification" evidence=IEA] [GO:0021526 "medial motor
column neuron differentiation" evidence=IEA] [GO:0021527 "spinal
cord association neuron differentiation" evidence=IEA] [GO:0021983
"pituitary gland development" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048839 "inner ear development"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0043066 GO:GO:0030154 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0045944 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667 Gene3D:2.10.110.10
GO:GO:0000988 EMBL:AADN02026398 IPI:IPI00820696
ProteinModelPortal:F6QGM2 Ensembl:ENSGALT00000006259
ArrayExpress:F6QGM2 Uniprot:F6QGM2
Length = 214
Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
Identities = 46/119 (38%), Positives = 62/119 (52%)
Query: 35 CAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFG 94
CA C+Q + + V D + K S + Q ++ CF R YCK D+ + FG
Sbjct: 28 CAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQTQLAEK---CFSRGDGVYCKEDFFKRFG 84
Query: 95 TKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDG-LFCKDDHE 152
TKC C V RA++ +YH+ CF C+VC +QL GDEF L ED L CK D+E
Sbjct: 85 TKCAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEFYLMEDSRLVCKADYE 143
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 25/58 (43%), Positives = 34/58 (58%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+ LC GC I D++IL+V D WH+ CL+C++C L E C F R YCK D+
Sbjct: 25 IPLCAGCNQHIVDRFILKVL-DRHWHSKCLKCSDCQTQLAEKC--FSRGDGVYCKEDF 79
>UNIPROTKB|E1BSF2 [details] [associations]
symbol:LHX9 "LIM/homeobox protein Lhx9" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
Pfam:PF00046 PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071
SMART:SM00132 SMART:SM00389 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GeneTree:ENSGT00680000099670
EMBL:AADN02033814 EMBL:AADN02033815 IPI:IPI00685016
Ensembl:ENSGALT00000034098 ArrayExpress:E1BSF2 Uniprot:E1BSF2
Length = 330
Score = 217 (81.4 bits), Expect = 7.8e-18, P = 7.8e-18
Identities = 40/121 (33%), Positives = 60/121 (49%)
Query: 35 CAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFG 94
CA C + + D K + R E L+ TCF +DG YCK DY R F
Sbjct: 71 CAGCGGKISDRYYLLAVD-KQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFS 129
Query: 95 T-KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEG 153
+C +C+L + VMRA+ +YH+ CF C C K L GD F ++++ ++C+ E
Sbjct: 130 VQRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRAHFES 189
Query: 154 M 154
+
Sbjct: 190 L 190
Score = 184 (69.8 bits), Expect = 5.6e-14, P = 5.6e-14
Identities = 30/57 (52%), Positives = 38/57 (66%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+LC GCGG+I D+Y L +A D +WH CL+C EC L+ TCF +DG YCK DY
Sbjct: 69 ALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDY 124
>ZFIN|ZDB-GENE-980526-131 [details] [associations]
symbol:lhx3 "LIM homeobox 3" species:7955 "Danio
rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 ZFIN:ZDB-GENE-980526-131 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
eggNOG:NOG275246 KO:K09374 HOVERGEN:HBG006263 CTD:8022 EMBL:U34590
IPI:IPI00486105 RefSeq:NP_571283.1 UniGene:Dr.570
ProteinModelPortal:Q90421 SMR:Q90421 STRING:Q90421 GeneID:30455
KEGG:dre:30455 NextBio:20806850 Uniprot:Q90421
Length = 398
Score = 221 (82.9 bits), Expect = 8.3e-18, P = 8.3e-18
Identities = 46/119 (38%), Positives = 63/119 (52%)
Query: 35 CAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFG 94
CA C+Q + + V D + K S ++Q D+ CF R YCK D+ + FG
Sbjct: 28 CAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQSQLADK---CFSRGDSVYCKDDFFKRFG 84
Query: 95 TKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDG-LFCKDDHE 152
TKC C V RA++ +YH+ CF C+VC +QL GDE+ L ED L CK D+E
Sbjct: 85 TKCAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEYYLMEDSRLVCKADYE 143
Score = 132 (51.5 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+ +C GC I D++IL+V D WH+ CL+C++C L + C F R YCK D+
Sbjct: 25 IPVCAGCNQHIVDRFILKVL-DRHWHSKCLKCSDCQSQLADKC--FSRGDSVYCKDDF 79
>ZFIN|ZDB-GENE-040426-1099 [details] [associations]
symbol:zgc:56628 "zgc:56628" species:7955 "Danio
rerio" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478
PROSITE:PS50023 SMART:SM00132 ZFIN:ZDB-GENE-040426-1099
GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104177 HSSP:P70662 HOGENOM:HOG000232175
HOVERGEN:HBG054231 eggNOG:NOG314117 EMBL:BX927330 EMBL:BC049054
IPI:IPI00512792 RefSeq:NP_956566.1 UniGene:Dr.18443 SMR:Q7ZUG7
Ensembl:ENSDART00000022112 GeneID:393242 KEGG:dre:393242
OMA:TELRTCV NextBio:20814305 Uniprot:Q7ZUG7
Length = 172
Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 42/119 (35%), Positives = 59/119 (49%)
Query: 34 RCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLF 93
RC C + + F DG +C S + Q + +CF + G CK DY+RLF
Sbjct: 33 RCVGCGCKISDRFLLFALDGYWHCHCLKCSCCQAQLAEIGSSCFTKRGLILCKSDYLRLF 92
Query: 94 GTK--CEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDD 150
G C C + + VMRA+ ++HV+CF C +C QLVPGD F L+C+ D
Sbjct: 93 GHSGACRACGTSIPANEMVMRAQGNVFHVKCFVCSICHNQLVPGDRFHYANGKLYCERD 151
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 31/97 (31%), Positives = 45/97 (46%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDE-NCTCFVRDGKTYCKRDYVSSE 65
CVGCG +I D+++L A D WH CL+C+ C L E +CF + G CK DY+
Sbjct: 34 CVGCGCKISDRFLL-FALDGYWHCHCLKCSCCQAQLAEIGSSCFTKRGLILCKSDYLRLF 92
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNL 102
+ C + R +F KC C++
Sbjct: 93 GHSGACRACGTSI-PANEMVMRAQGNVFHVKCFVCSI 128
>UNIPROTKB|Q68EY3 [details] [associations]
symbol:lhx9 "LIM/homeobox protein Lhx9" species:8355
"Xenopus laevis" [GO:0003714 "transcription corepressor activity"
evidence=ISS] [GO:0008045 "motor neuron axon guidance"
evidence=ISS] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=ISS] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0003714 GO:GO:0045892
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0008045
KO:K09373 HOVERGEN:HBG006262 HSSP:P61969 EMBL:BC080067
RefSeq:NP_001087527.1 UniGene:Xl.28959 ProteinModelPortal:Q68EY3
SMR:Q68EY3 GeneID:447351 KEGG:xla:447351 CTD:447351
Xenbase:XB-GENE-866119 Uniprot:Q68EY3
Length = 331
Score = 216 (81.1 bits), Expect = 1.1e-17, P = 1.1e-17
Identities = 39/114 (34%), Positives = 58/114 (50%)
Query: 35 CAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFG 94
CA C + + D K + R E L+ TCF +DG YCK DY R
Sbjct: 73 CAGCGGKISDRYYLLAVD-KQWHLRCLKCCECKLTLESELTCFAKDGSIYCKEDYYRFSV 131
Query: 95 TKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCK 148
+C +C+L + VMRA+ +YH+ CF C C K L GD+F ++E+ ++C+
Sbjct: 132 KRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLSTGDQFGMKENLVYCR 185
Score = 187 (70.9 bits), Expect = 2.6e-14, P = 2.6e-14
Identities = 47/135 (34%), Positives = 65/135 (48%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
+LC GCGG+I D+Y L +A D +WH CL+C EC L+ TCF +DG YCK DY
Sbjct: 71 TLCAGCGGKISDRYYL-LAVDKQWHLRCLKCCECKLTLESELTCFAKDGSIYCKEDYYRF 129
Query: 65 EKNQFLDENCTCFVRDGKTYCK-RDYV-RLFGTKCEKCNLNFKRED-FVMRAKNKIYHVQ 121
+ C + + + R+ V L C CN D F M+ +N +Y
Sbjct: 130 SVKRCA--RCHLGISASEMVMRARESVYHLSCFTCTTCNKTLSTGDQFGMK-ENLVY--- 183
Query: 122 CFCCVVCGKQLVPGD 136
C + + LV GD
Sbjct: 184 ---CRIHFELLVQGD 195
>UNIPROTKB|H0YM35 [details] [associations]
symbol:LHX2 "LIM/homeobox protein Lhx2" species:9606 "Homo
sapiens" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000988
"protein binding transcription factor activity" evidence=IEA]
[GO:0001843 "neural tube closure" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0007411 "axon guidance" evidence=IEA]
[GO:0007498 "mesoderm development" evidence=IEA] [GO:0009953
"dorsal/ventral pattern formation" evidence=IEA] [GO:0021978
"telencephalon regionalization" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:2000678 "negative regulation of transcription
regulatory region DNA binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
GO:GO:0005634 GO:GO:0007411 GO:GO:0007498 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0045944 Gene3D:2.10.110.10
GO:GO:0001843 GO:GO:0009953 GO:GO:0021978 GO:GO:0000988
EMBL:AC006450 GO:GO:2000678 HGNC:HGNC:6594 ChiTaRS:LHX2
EMBL:AL158052 Ensembl:ENST00000560961 Bgee:H0YM35 Uniprot:H0YM35
Length = 147
Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 43/132 (32%), Positives = 64/132 (48%)
Query: 24 PDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKT 83
P + A L CA C + + D K + R E L+ TCF +DG
Sbjct: 2 PSISSDRAAL-CAGCGGKISDRYYLLAVD-KQWHMRCLKCCECKLNLESELTCFSKDGSI 59
Query: 84 YCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALRE 142
YCK DY R F +C +C+L + VMRA++ +YH+ CF C C K L GD F +++
Sbjct: 60 YCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKD 119
Query: 143 DGLFCKDDHEGM 154
++C+ E +
Sbjct: 120 SLVYCRLHFEAL 131
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 31/59 (52%), Positives = 39/59 (66%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
R +LC GCGG+I D+Y L +A D +WH CL+C EC L+ TCF +DG YCK DY
Sbjct: 8 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDY 65
>FB|FBgn0013751 [details] [associations]
symbol:Awh "Arrowhead" species:7227 "Drosophila melanogaster"
[GO:0007444 "imaginal disc development" evidence=IMP] [GO:0005634
"nucleus" evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
EMBL:AE014296 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0007444 EMBL:U82539 EMBL:AY071197
EMBL:BT025230 RefSeq:NP_523907.2 RefSeq:NP_728906.1 UniGene:Dm.6063
ProteinModelPortal:Q8IRC7 SMR:Q8IRC7 PRIDE:Q8IRC7
EnsemblMetazoa:FBtr0073156 GeneID:38451 KEGG:dme:Dmel_CG1072
UCSC:CG1072-RA CTD:38451 FlyBase:FBgn0013751 eggNOG:NOG264882
GeneTree:ENSGT00700000104050 HOGENOM:HOG000214908 InParanoid:Q8IRC7
OMA:IHDRYLL OrthoDB:EOG42BVRJ PhylomeDB:Q8IRC7 GenomeRNAi:38451
NextBio:808729 Bgee:Q8IRC7 GermOnline:CG1072 Uniprot:Q8IRC7
Length = 275
Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 70 LDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCG 129
LD +CF+R+ + YCK DY + FG KC KC D+V RA+ ++H+ CF C CG
Sbjct: 42 LDRQQSCFIRERQVYCKADYSKNFGAKCSKCCRGISASDWVRRARELVFHLACFACDQCG 101
Query: 130 KQLVPGDEFALREDGLFCK 148
+QL G++FAL +D + CK
Sbjct: 102 RQLSTGEQFALMDDRVLCK 120
Score = 148 (57.2 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 35/103 (33%), Positives = 46/103 (44%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
K L C CG I D++ L V WHA CLRC C LD +CF+R+ + YCK D
Sbjct: 2 KTELRSCAACGEPISDRFFLEVG-GCSWHAHCLRCCMCMCPLDRQQSCFIRERQVYCKAD 60
Query: 61 YVSSEKNQFLDENCT--CFVRDGKTYCKRDYVRLFGTKCEKCN 101
Y KN C+ C + +R +F C C+
Sbjct: 61 Y---SKN--FGAKCSKCCRGISASDWVRRARELVFHLACFACD 98
>UNIPROTKB|P53412 [details] [associations]
symbol:LHX3 "LIM/homeobox protein Lhx3" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0000988 "protein binding transcription factor
activity" evidence=IEA] [GO:0001890 "placenta development"
evidence=IEA] [GO:0005667 "transcription factor complex"
evidence=IEA] [GO:0008045 "motor neuron axon guidance"
evidence=IEA] [GO:0021520 "spinal cord motor neuron cell fate
specification" evidence=IEA] [GO:0021521 "ventral spinal cord
interneuron specification" evidence=IEA] [GO:0021526 "medial motor
column neuron differentiation" evidence=IEA] [GO:0021527 "spinal
cord association neuron differentiation" evidence=IEA] [GO:0021983
"pituitary gland development" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048839 "inner ear development"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0043066 GO:GO:0030154 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0045944 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667
Gene3D:2.10.110.10 GO:GO:0000988 eggNOG:NOG275246
GeneTree:ENSGT00700000104177 HOGENOM:HOG000231629 KO:K09374
HOVERGEN:HBG006263 EMBL:L35570 IPI:IPI00651346 PIR:I50376
RefSeq:NP_001025506.1 UniGene:Gga.91 ProteinModelPortal:P53412
SMR:P53412 STRING:P53412 Ensembl:ENSGALT00000002663 GeneID:373940
KEGG:gga:373940 CTD:8022 InParanoid:P53412 OMA:PLCAGCN
NextBio:20813472 ArrayExpress:P53412 Uniprot:P53412
Length = 395
Score = 219 (82.2 bits), Expect = 1.3e-17, P = 1.3e-17
Identities = 46/119 (38%), Positives = 62/119 (52%)
Query: 35 CAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFG 94
CA C+Q + + V D + K S + Q ++ CF R YCK D+ + FG
Sbjct: 28 CAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQTQLAEK---CFSRGDGVYCKEDFFKRFG 84
Query: 95 TKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDG-LFCKDDHE 152
TKC C V RA++ +YH+ CF C+VC +QL GDEF L ED L CK D+E
Sbjct: 85 TKCAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEFYLMEDSRLVCKADYE 143
Score = 137 (53.3 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 25/58 (43%), Positives = 34/58 (58%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+ LC GC I D++IL+V D WH+ CL+C++C L E C F R YCK D+
Sbjct: 25 IPLCAGCNQHIVDRFILKVL-DRHWHSKCLKCSDCQTQLAEKC--FSRGDGVYCKEDF 79
>ZFIN|ZDB-GENE-980526-484 [details] [associations]
symbol:lhx5 "LIM homeobox 5" species:7955 "Danio
rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0030900 "forebrain development"
evidence=IMP;IDA] [GO:0001654 "eye development" evidence=IGI]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
ZFIN:ZDB-GENE-980526-484 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0030900 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0001654
GeneTree:ENSGT00700000104177 eggNOG:NOG257130 HOGENOM:HOG000231630
HOVERGEN:HBG006263 KO:K09372 OrthoDB:EOG405S1F EMBL:L42547
EMBL:BC098523 IPI:IPI00509409 RefSeq:NP_571293.1 UniGene:Dr.75068
ProteinModelPortal:P52889 SMR:P52889 STRING:P52889
Ensembl:ENSDART00000080693 GeneID:30465 KEGG:dre:30465 CTD:64211
InParanoid:P52889 OMA:SHQGQEM NextBio:20806859 Bgee:P52889
Uniprot:P52889
Length = 399
Score = 219 (82.2 bits), Expect = 1.4e-17, P = 1.4e-17
Identities = 47/120 (39%), Positives = 65/120 (54%)
Query: 33 LRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRL 92
+ CA C + + + V D + K E N L E C F RDGK YCK D+ R
Sbjct: 3 VHCAGCERPILDRFLLNVLDRAWHAKC-VQCCECNCNLTEKC--FSRDGKLYCKIDFFRR 59
Query: 93 FGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDE-FALREDGLFCKDDH 151
FGTKC C D V RA++K++H+ CF C+VC KQL G+E + + E+ CK+D+
Sbjct: 60 FGTKCAGCLQGISPSDLVRRARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKEDY 119
Score = 142 (55.0 bits), Expect = 4.1e-09, P = 4.1e-09
Identities = 27/55 (49%), Positives = 34/55 (61%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
C GC I D+++L V D WHA C++C EC+ L E C F RDGK YCK D+
Sbjct: 5 CAGCERPILDRFLLNVL-DRAWHAKCVQCCECNCNLTEKC--FSRDGKLYCKIDF 56
>UNIPROTKB|F1NV70 [details] [associations]
symbol:LHX9 "LIM/homeobox protein Lhx9" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008283 "cell
proliferation" evidence=IEA] [GO:0008584 "male gonad development"
evidence=IEA] [GO:0008585 "female gonad development" evidence=IEA]
[GO:0035262 "gonad morphogenesis" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 OMA:AAMLFHG IPI:IPI00682838
EMBL:AADN02033814 EMBL:AADN02033815 Ensembl:ENSGALT00000003480
ArrayExpress:F1NV70 Uniprot:F1NV70
Length = 378
Score = 217 (81.4 bits), Expect = 1.9e-17, P = 1.9e-17
Identities = 40/121 (33%), Positives = 60/121 (49%)
Query: 35 CAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFG 94
CA C + + D K + R E L+ TCF +DG YCK DY R F
Sbjct: 52 CAGCGGKISDRYYLLAVD-KQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFS 110
Query: 95 T-KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEG 153
+C +C+L + VMRA+ +YH+ CF C C K L GD F ++++ ++C+ E
Sbjct: 111 VQRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRAHFES 170
Query: 154 M 154
+
Sbjct: 171 L 171
Score = 184 (69.8 bits), Expect = 9.0e-14, P = 9.0e-14
Identities = 30/57 (52%), Positives = 38/57 (66%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+LC GCGG+I D+Y L +A D +WH CL+C EC L+ TCF +DG YCK DY
Sbjct: 50 ALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDY 105
>UNIPROTKB|A6QQY6 [details] [associations]
symbol:LHX5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0021937 "cerebellar Purkinje cell-granule cell precursor cell
signaling involved in regulation of granule cell precursor cell
proliferation" evidence=IEA] [GO:0021879 "forebrain neuron
differentiation" evidence=IEA] [GO:0021846 "cell proliferation in
forebrain" evidence=IEA] [GO:0021766 "hippocampus development"
evidence=IEA] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=IEA] [GO:0021527 "spinal cord association
neuron differentiation" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0021766 GO:GO:0045893 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0021846 GO:GO:0021879
GO:GO:0021527 GO:GO:0021702 GeneTree:ENSGT00700000104177
eggNOG:NOG257130 HOGENOM:HOG000231630 HOVERGEN:HBG006263 KO:K09372
OrthoDB:EOG405S1F GO:GO:0021937 CTD:64211 OMA:SHQGQEM
EMBL:DAAA02045421 EMBL:BC150043 IPI:IPI00867450
RefSeq:NP_001095531.1 UniGene:Bt.88188 Ensembl:ENSBTAT00000004042
GeneID:520759 KEGG:bta:520759 InParanoid:A6QQY6 NextBio:20873176
Uniprot:A6QQY6
Length = 402
Score = 218 (81.8 bits), Expect = 1.9e-17, P = 1.9e-17
Identities = 45/120 (37%), Positives = 64/120 (53%)
Query: 33 LRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRL 92
+ CA C + + + V D + K K L E C F R+GK YCK D+ R
Sbjct: 3 VHCAGCERPILDRFLLNVLDRAWHIKCVQCCECKTN-LSEKC--FSREGKLYCKNDFFRR 59
Query: 93 FGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDE-FALREDGLFCKDDH 151
FGTKC C D V +A++K++H+ CF C+VC KQL G+E + + E+ CKDD+
Sbjct: 60 FGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY 119
Score = 137 (53.3 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
C GC I D+++L V D WH C++C EC L E C F R+GK YCK D+
Sbjct: 5 CAGCERPILDRFLLNVL-DRAWHIKCVQCCECKTNLSEKC--FSREGKLYCKNDF 56
>UNIPROTKB|E2RRP3 [details] [associations]
symbol:LHX5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0021937 "cerebellar Purkinje cell-granule cell precursor cell
signaling involved in regulation of granule cell precursor cell
proliferation" evidence=IEA] [GO:0021879 "forebrain neuron
differentiation" evidence=IEA] [GO:0021846 "cell proliferation in
forebrain" evidence=IEA] [GO:0021766 "hippocampus development"
evidence=IEA] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=IEA] [GO:0021527 "spinal cord association
neuron differentiation" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0021766 GO:GO:0045893 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0021846 GO:GO:0021879
GO:GO:0021527 GO:GO:0021702 GeneTree:ENSGT00700000104177 KO:K09372
GO:GO:0021937 CTD:64211 OMA:SHQGQEM EMBL:AAEX03014690
RefSeq:XP_543409.3 ProteinModelPortal:E2RRP3
Ensembl:ENSCAFT00000014514 GeneID:486283 KEGG:cfa:486283
NextBio:20860085 Uniprot:E2RRP3
Length = 402
Score = 218 (81.8 bits), Expect = 1.9e-17, P = 1.9e-17
Identities = 45/120 (37%), Positives = 64/120 (53%)
Query: 33 LRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRL 92
+ CA C + + + V D + K K L E C F R+GK YCK D+ R
Sbjct: 3 VHCAGCERPILDRFLLNVLDRAWHIKCVQCCECKTN-LSEKC--FSREGKLYCKNDFFRR 59
Query: 93 FGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDE-FALREDGLFCKDDH 151
FGTKC C D V +A++K++H+ CF C+VC KQL G+E + + E+ CKDD+
Sbjct: 60 FGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY 119
Score = 137 (53.3 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
C GC I D+++L V D WH C++C EC L E C F R+GK YCK D+
Sbjct: 5 CAGCERPILDRFLLNVL-DRAWHIKCVQCCECKTNLSEKC--FSREGKLYCKNDF 56
>UNIPROTKB|Q9H2C1 [details] [associations]
symbol:LHX5 "LIM/homeobox protein Lhx5" species:9606 "Homo
sapiens" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0021527 "spinal cord association neuron
differentiation" evidence=IEA] [GO:0021702 "cerebellar Purkinje
cell differentiation" evidence=IEA] [GO:0021766 "hippocampus
development" evidence=IEA] [GO:0021846 "cell proliferation in
forebrain" evidence=IEA] [GO:0021879 "forebrain neuron
differentiation" evidence=IEA] [GO:0021937 "cerebellar Purkinje
cell-granule cell precursor cell signaling involved in regulation
of granule cell precursor cell proliferation" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0021766 GO:GO:0045893 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0021846
GO:GO:0021879 GO:GO:0021527 GO:GO:0021702 eggNOG:NOG257130
HOGENOM:HOG000231630 HOVERGEN:HBG006263 KO:K09372 OrthoDB:EOG405S1F
GO:GO:0021937 CTD:64211 OMA:SHQGQEM EMBL:AF291181 EMBL:BC109230
IPI:IPI00022760 RefSeq:NP_071758.1 UniGene:Hs.302029
ProteinModelPortal:Q9H2C1 SMR:Q9H2C1 STRING:Q9H2C1
PhosphoSite:Q9H2C1 DMDM:18202938 PRIDE:Q9H2C1
Ensembl:ENST00000261731 GeneID:64211 KEGG:hsa:64211 UCSC:uc001tvj.1
GeneCards:GC12M113900 HGNC:HGNC:14216 MIM:605992 neXtProt:NX_Q9H2C1
PharmGKB:PA30367 InParanoid:Q9H2C1 PhylomeDB:Q9H2C1
GenomeRNAi:64211 NextBio:66119 Bgee:Q9H2C1 CleanEx:HS_LHX5
Genevestigator:Q9H2C1 GermOnline:ENSG00000089116 Uniprot:Q9H2C1
Length = 402
Score = 218 (81.8 bits), Expect = 1.9e-17, P = 1.9e-17
Identities = 45/120 (37%), Positives = 64/120 (53%)
Query: 33 LRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRL 92
+ CA C + + + V D + K K L E C F R+GK YCK D+ R
Sbjct: 3 VHCAGCERPILDRFLLNVLDRAWHIKCVQCCECKTN-LSEKC--FSREGKLYCKNDFFRR 59
Query: 93 FGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDE-FALREDGLFCKDDH 151
FGTKC C D V +A++K++H+ CF C+VC KQL G+E + + E+ CKDD+
Sbjct: 60 FGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY 119
Score = 137 (53.3 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
C GC I D+++L V D WH C++C EC L E C F R+GK YCK D+
Sbjct: 5 CAGCERPILDRFLLNVL-DRAWHIKCVQCCECKTNLSEKC--FSREGKLYCKNDF 56
>MGI|MGI:107792 [details] [associations]
symbol:Lhx5 "LIM homeobox protein 5" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0007267 "cell-cell signaling" evidence=IGI] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0021527 "spinal cord association
neuron differentiation" evidence=IGI] [GO:0021549 "cerebellum
development" evidence=IGI] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=IGI] [GO:0021766 "hippocampus
development" evidence=IMP] [GO:0021846 "cell proliferation in
forebrain" evidence=IMP] [GO:0021879 "forebrain neuron
differentiation" evidence=IMP] [GO:0021937 "cerebellar Purkinje
cell-granule cell precursor cell signaling involved in regulation
of granule cell precursor cell proliferation" evidence=IGI]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IGI] [GO:0046872 "metal ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 MGI:MGI:107792 GO:GO:0005634 GO:GO:0021766
GO:GO:0045893 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0021846 GO:GO:0021879 GO:GO:0021527
GO:GO:0021702 eggNOG:NOG257130 HOGENOM:HOG000231630
HOVERGEN:HBG006263 KO:K09372 OrthoDB:EOG405S1F GO:GO:0021937
CTD:64211 OMA:SHQGQEM EMBL:U61155 EMBL:BC057585 IPI:IPI00118119
RefSeq:NP_032525.1 UniGene:Mm.5151 ProteinModelPortal:P61375
SMR:P61375 STRING:P61375 PhosphoSite:P61375 PRIDE:P61375
Ensembl:ENSMUST00000031591 GeneID:16873 KEGG:mmu:16873
InParanoid:P61375 NextBio:290846 Bgee:P61375 CleanEx:MM_LHX5
Genevestigator:P61375 GermOnline:ENSMUSG00000029595 Uniprot:P61375
Length = 402
Score = 218 (81.8 bits), Expect = 1.9e-17, P = 1.9e-17
Identities = 45/120 (37%), Positives = 64/120 (53%)
Query: 33 LRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRL 92
+ CA C + + + V D + K K L E C F R+GK YCK D+ R
Sbjct: 3 VHCAGCERPILDRFLLNVLDRAWHIKCVQCCECKTN-LSEKC--FSREGKLYCKNDFFRR 59
Query: 93 FGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDE-FALREDGLFCKDDH 151
FGTKC C D V +A++K++H+ CF C+VC KQL G+E + + E+ CKDD+
Sbjct: 60 FGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY 119
Score = 137 (53.3 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
C GC I D+++L V D WH C++C EC L E C F R+GK YCK D+
Sbjct: 5 CAGCERPILDRFLLNVL-DRAWHIKCVQCCECKTNLSEKC--FSREGKLYCKNDF 56
>RGD|71079 [details] [associations]
symbol:Lhx5 "LIM homeobox 5" species:10116 "Rattus norvegicus"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA] [GO:0007267
"cell-cell signaling" evidence=ISO] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0021527 "spinal cord association neuron
differentiation" evidence=IEA;ISO] [GO:0021549 "cerebellum
development" evidence=ISO] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=IEA;ISO] [GO:0021766 "hippocampus
development" evidence=IEA;ISO] [GO:0021846 "cell proliferation in
forebrain" evidence=IEA;ISO] [GO:0021879 "forebrain neuron
differentiation" evidence=IEA;ISO] [GO:0021937 "cerebellar Purkinje
cell-granule cell precursor cell signaling involved in regulation of
granule cell precursor cell proliferation" evidence=IEA;ISO]
[GO:0042127 "regulation of cell proliferation" evidence=ISO]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA;ISO] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 RGD:71079 GO:GO:0005634 GO:GO:0021766 GO:GO:0045893
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GO:GO:0021846 GO:GO:0021879 GO:GO:0021527 GO:GO:0021702
GeneTree:ENSGT00700000104177 eggNOG:NOG257130 HOGENOM:HOG000231630
HOVERGEN:HBG006263 KO:K09372 OrthoDB:EOG405S1F GO:GO:0021937
CTD:64211 OMA:SHQGQEM EMBL:L35572 IPI:IPI00198471 PIR:I61573
RefSeq:NP_620605.1 UniGene:Rn.54653 ProteinModelPortal:P61376
SMR:P61376 STRING:P61376 Ensembl:ENSRNOT00000001883 GeneID:124451
KEGG:rno:124451 UCSC:RGD:71079 InParanoid:P61376 NextBio:620463
Genevestigator:P61376 GermOnline:ENSRNOG00000001392 Uniprot:P61376
Length = 402
Score = 218 (81.8 bits), Expect = 1.9e-17, P = 1.9e-17
Identities = 45/120 (37%), Positives = 64/120 (53%)
Query: 33 LRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRL 92
+ CA C + + + V D + K K L E C F R+GK YCK D+ R
Sbjct: 3 VHCAGCERPILDRFLLNVLDRAWHIKCVQCCECKTN-LSEKC--FSREGKLYCKNDFFRR 59
Query: 93 FGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDE-FALREDGLFCKDDH 151
FGTKC C D V +A++K++H+ CF C+VC KQL G+E + + E+ CKDD+
Sbjct: 60 FGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY 119
Score = 137 (53.3 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
C GC I D+++L V D WH C++C EC L E C F R+GK YCK D+
Sbjct: 5 CAGCERPILDRFLLNVL-DRAWHIKCVQCCECKTNLSEKC--FSREGKLYCKNDF 56
>UNIPROTKB|E1BQX0 [details] [associations]
symbol:LHX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0021527
"spinal cord association neuron differentiation" evidence=IEA]
[GO:0021702 "cerebellar Purkinje cell differentiation"
evidence=IEA] [GO:0021766 "hippocampus development" evidence=IEA]
[GO:0021846 "cell proliferation in forebrain" evidence=IEA]
[GO:0021879 "forebrain neuron differentiation" evidence=IEA]
[GO:0021937 "cerebellar Purkinje cell-granule cell precursor cell
signaling involved in regulation of granule cell precursor cell
proliferation" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0045893 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GeneTree:ENSGT00700000104177 GO:GO:0021937
OMA:SHQGQEM EMBL:AADN02050410 EMBL:AADN02050411 EMBL:AADN02050412
EMBL:AADN02050413 EMBL:AADN02050414 IPI:IPI00574747
Ensembl:ENSGALT00000013517 NextBio:20921461 Uniprot:E1BQX0
Length = 402
Score = 218 (81.8 bits), Expect = 1.9e-17, P = 1.9e-17
Identities = 35/77 (45%), Positives = 52/77 (67%)
Query: 76 CFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPG 135
CF R+GK YCK+++ R FGTKC C+ D V +A+NK++H+ CF C+VC KQL G
Sbjct: 43 CFFREGKLYCKKNFFRRFGTKCAGCSQGISPSDLVRKARNKVFHLNCFTCMVCNKQLSTG 102
Query: 136 DEFALREDGLF-CKDDH 151
+E + ++ F CK+D+
Sbjct: 103 EELYIIDENKFVCKEDY 119
Score = 132 (51.5 bits), Expect = 5.1e-08, P = 5.1e-08
Identities = 24/55 (43%), Positives = 33/55 (60%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
C GC I D+++L V D WH C++C EC L E C F R+GK YCK+++
Sbjct: 5 CAGCERPILDRFLLNVL-DRAWHIKCVQCCECKCNLTEKC--FFREGKLYCKKNF 56
>UNIPROTKB|Q90881 [details] [associations]
symbol:LHX9 "LIM/homeobox protein Lhx9" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0021522
"spinal cord motor neuron differentiation" evidence=IEP]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0008045 "motor neuron axon guidance"
evidence=IDA] [GO:0003714 "transcription corepressor activity"
evidence=IDA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0003714 GO:GO:0045892
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0008045
GO:GO:0021522 eggNOG:NOG240987 KO:K09373 HOGENOM:HOG000034022
HOVERGEN:HBG006262 EMBL:L35566 IPI:IPI00682838 PIR:JC5658
RefSeq:NP_990757.1 UniGene:Gga.2348 HSSP:P61969 STRING:Q90881
GeneID:396397 KEGG:gga:396397 CTD:56956 InParanoid:Q90881
NextBio:20816439 Uniprot:Q90881
Length = 397
Score = 217 (81.4 bits), Expect = 2.3e-17, P = 2.3e-17
Identities = 40/121 (33%), Positives = 60/121 (49%)
Query: 35 CAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFG 94
CA C + + D K + R E L+ TCF +DG YCK DY R F
Sbjct: 71 CAGCGGKISDRYYLLAVD-KQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFS 129
Query: 95 T-KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEG 153
+C +C+L + VMRA+ +YH+ CF C C K L GD F ++++ ++C+ E
Sbjct: 130 VQRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRAHFES 189
Query: 154 M 154
+
Sbjct: 190 L 190
Score = 184 (69.8 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 30/57 (52%), Positives = 38/57 (66%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+LC GCGG+I D+Y L +A D +WH CL+C EC L+ TCF +DG YCK DY
Sbjct: 69 ALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDY 124
>UNIPROTKB|F1RKD0 [details] [associations]
symbol:LHX5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0021937 "cerebellar Purkinje cell-granule cell precursor cell
signaling involved in regulation of granule cell precursor cell
proliferation" evidence=IEA] [GO:0021879 "forebrain neuron
differentiation" evidence=IEA] [GO:0021846 "cell proliferation in
forebrain" evidence=IEA] [GO:0021766 "hippocampus development"
evidence=IEA] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=IEA] [GO:0021527 "spinal cord association
neuron differentiation" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0021766 GO:GO:0045893 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0021846 GO:GO:0021879
GO:GO:0021527 GO:GO:0021702 GeneTree:ENSGT00700000104177
GO:GO:0021937 OMA:SHQGQEM EMBL:CU468670 Ensembl:ENSSSCT00000010817
Uniprot:F1RKD0
Length = 401
Score = 217 (81.4 bits), Expect = 2.4e-17, P = 2.4e-17
Identities = 36/77 (46%), Positives = 50/77 (64%)
Query: 76 CFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPG 135
CF R+GK YCK D+ R FGTKC C D V +A++K++H+ CF C+VC KQL G
Sbjct: 42 CFSREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTG 101
Query: 136 DE-FALREDGLFCKDDH 151
+E + + E+ CKDD+
Sbjct: 102 EELYVIDENKFVCKDDY 118
Score = 131 (51.2 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
C GC I D+++L V D WH C++C EC L E C F R+GK YCK D+
Sbjct: 5 CAGCERPILDRFLLNVL-DRAWHIKCVQCCECTN-LSEKC--FSREGKLYCKNDF 55
>UNIPROTKB|E2R2S6 [details] [associations]
symbol:LHX9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
Pfam:PF00046 PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071
SMART:SM00132 SMART:SM00389 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GeneTree:ENSGT00680000099670
EMBL:AAEX03005042 SMR:E2R2S6 Ensembl:ENSCAFT00000018020
Uniprot:E2R2S6
Length = 330
Score = 213 (80.0 bits), Expect = 2.4e-17, P = 2.4e-17
Identities = 40/119 (33%), Positives = 59/119 (49%)
Query: 35 CAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFG 94
CA C + + D K + R E L+ TCF +DG YCK DY R F
Sbjct: 71 CAGCGGKISDRYYLLAVD-KQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFS 129
Query: 95 T-KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHE 152
+C +C+L + VMRA++ +YH+ CF C C K L GD F +++ ++C+ E
Sbjct: 130 VQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 188
Score = 184 (69.8 bits), Expect = 5.6e-14, P = 5.6e-14
Identities = 30/57 (52%), Positives = 38/57 (66%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+LC GCGG+I D+Y L +A D +WH CL+C EC L+ TCF +DG YCK DY
Sbjct: 69 ALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDY 124
>UNIPROTKB|H0YL54 [details] [associations]
symbol:LHX9 "LIM/homeobox protein Lhx9" species:9606 "Homo
sapiens" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
Pfam:PF00046 PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071
SMART:SM00132 SMART:SM00389 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 EMBL:AL590115 HGNC:HGNC:14222
ProteinModelPortal:H0YL54 SMR:H0YL54 Ensembl:ENST00000561173
Bgee:H0YL54 Uniprot:H0YL54
Length = 336
Score = 213 (80.0 bits), Expect = 2.8e-17, P = 2.8e-17
Identities = 40/119 (33%), Positives = 59/119 (49%)
Query: 35 CAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFG 94
CA C + + D K + R E L+ TCF +DG YCK DY R F
Sbjct: 77 CAGCGGKISDRYYLLAVD-KQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFS 135
Query: 95 T-KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHE 152
+C +C+L + VMRA++ +YH+ CF C C K L GD F +++ ++C+ E
Sbjct: 136 VQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 194
Score = 184 (69.8 bits), Expect = 6.0e-14, P = 6.0e-14
Identities = 30/57 (52%), Positives = 38/57 (66%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+LC GCGG+I D+Y L +A D +WH CL+C EC L+ TCF +DG YCK DY
Sbjct: 75 ALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDY 130
>ZFIN|ZDB-GENE-980526-347 [details] [associations]
symbol:lhx1a "LIM homeobox 1a" species:7955 "Danio
rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0001071 "nucleic acid
binding transcription factor activity" evidence=ISS] [GO:0001706
"endoderm formation" evidence=ISS] [GO:0001764 "neuron migration"
evidence=ISS] [GO:0001822 "kidney development" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0009791 "post-embryonic development"
evidence=ISS] [GO:0009880 "embryonic pattern specification"
evidence=ISS] [GO:0010842 "retina layer formation" evidence=ISS]
[GO:0008045 "motor neuron axon guidance" evidence=ISS] [GO:0043234
"protein complex" evidence=ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0060059 "embryonic
retina morphogenesis in camera-type eye" evidence=ISS] [GO:0072049
"comma-shaped body morphogenesis" evidence=ISS] [GO:0072178
"nephric duct morphogenesis" evidence=ISS] [GO:0090009 "primitive
streak formation" evidence=ISS] [GO:2000543 "positive regulation of
gastrulation" evidence=ISS] [GO:2000768 "positive regulation of
nephron tubule epithelial cell differentiation" evidence=ISS]
[GO:0021702 "cerebellar Purkinje cell differentiation"
evidence=ISS] [GO:0001657 "ureteric bud development" evidence=ISS]
[GO:0003714 "transcription corepressor activity" evidence=ISS]
[GO:0009953 "dorsal/ventral pattern formation" evidence=ISS]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0060322 "head development" evidence=ISS]
[GO:0060429 "epithelium development" evidence=ISS] [GO:0072077
"renal vesicle morphogenesis" evidence=ISS] [GO:0090190 "positive
regulation of branching involved in ureteric bud morphogenesis"
evidence=ISS] [GO:0021527 "spinal cord association neuron
differentiation" evidence=ISS] [GO:0001705 "ectoderm formation"
evidence=ISS] [GO:0007267 "cell-cell signaling" evidence=ISS]
[GO:0040019 "positive regulation of embryonic development"
evidence=ISS] [GO:0061205 "paramesonephric duct development"
evidence=ISS] [GO:0072050 "S-shaped body morphogenesis"
evidence=ISS] [GO:2000744 "positive regulation of anterior head
development" evidence=ISS] [GO:0021871 "forebrain regionalization"
evidence=ISS] [GO:0021937 "cerebellar Purkinje cell-granule cell
precursor cell signaling involved in regulation of granule cell
precursor cell proliferation" evidence=ISS] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389
ZFIN:ZDB-GENE-980526-347 GO:GO:0005634 GO:GO:0003714 GO:GO:0045892
GO:GO:0001764 GO:GO:0045893 GO:GO:0043234 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0006366
GO:GO:0009791 GO:GO:0090190 GO:GO:0010842 GO:GO:0009953
GO:GO:0040019 GO:GO:0009880 GO:GO:0001657 GO:GO:0021527
GO:GO:0021702 GO:GO:0090009 GO:GO:0060059 GO:GO:2000768
GO:GO:0060322 GO:GO:0001071 GO:GO:0001706 GO:GO:0001705
GO:GO:2000543 GO:GO:0072049 GO:GO:0072050
GeneTree:ENSGT00700000104177 eggNOG:NOG257130 HOGENOM:HOG000231630
HOVERGEN:HBG006263 KO:K09372 OrthoDB:EOG405S1F GO:GO:0021937
GO:GO:0021871 GO:GO:0072178 GO:GO:0061205 GO:GO:2000744
GO:GO:0072077 EMBL:L37802 IPI:IPI00485723 RefSeq:NP_571291.1
UniGene:Dr.364 ProteinModelPortal:Q90476 SMR:Q90476 STRING:Q90476
Ensembl:ENSDART00000005641 GeneID:30463 KEGG:dre:30463 CTD:30463
InParanoid:Q90476 OMA:PSEMNEG NextBio:20806857 ArrayExpress:Q90476
Bgee:Q90476 Uniprot:Q90476
Length = 405
Score = 216 (81.1 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 36/77 (46%), Positives = 50/77 (64%)
Query: 76 CFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPG 135
CF R+GK YCK D+ R FGTKC C D V RA++K++H+ CF C++C KQL G
Sbjct: 42 CFSREGKLYCKNDFFRRFGTKCAGCAQGISPNDLVRRARSKVFHLNCFTCMMCNKQLSTG 101
Query: 136 DEFALREDGLF-CKDDH 151
+E + ++ F CKDD+
Sbjct: 102 EELYIIDENKFVCKDDY 118
Score = 134 (52.2 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
C GC I D+++L V D WH C++C EC L E C F R+GK YCK D+
Sbjct: 4 CAGCERPILDRFLLNVL-DRAWHIKCVQCCECKCNLTEKC--FSREGKLYCKNDF 55
>ZFIN|ZDB-GENE-050417-210 [details] [associations]
symbol:lhx9 "LIM homeobox 9" species:7955 "Danio
rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0003714 "transcription corepressor activity" evidence=ISS]
[GO:0008045 "motor neuron axon guidance" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389
ZFIN:ZDB-GENE-050417-210 GO:GO:0005634 GO:GO:0003714 GO:GO:0045892
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0008045
eggNOG:NOG240987 GeneTree:ENSGT00680000099670 KO:K09373
HOGENOM:HOG000034022 HOVERGEN:HBG006262 OMA:AAMLFHG CTD:56956
EMBL:AB188254 EMBL:BX004971 EMBL:BX511183 EMBL:BC163023
EMBL:BC163060 EMBL:BC163073 IPI:IPI00635283 RefSeq:NP_001032320.1
UniGene:Dr.42632 ProteinModelPortal:Q1LWV4 SMR:Q1LWV4 STRING:Q1LWV4
Ensembl:ENSDART00000054807 GeneID:550405 KEGG:dre:550405
InParanoid:Q1LWV4 NextBio:20879654 Bgee:Q1LWV4 Uniprot:Q1LWV4
Length = 396
Score = 215 (80.7 bits), Expect = 3.8e-17, P = 3.8e-17
Identities = 39/115 (33%), Positives = 59/115 (51%)
Query: 35 CAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFG 94
CA C + + D K + R E L+ TCF +DG YCK DY R F
Sbjct: 71 CAGCGGKISDRYYLLAVD-KQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFS 129
Query: 95 T-KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCK 148
+C +C+L + VMRA++ +YH+ CF C C K L GD F ++++ ++C+
Sbjct: 130 VQRCARCHLGISASEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCR 184
Score = 188 (71.2 bits), Expect = 3.7e-14, P = 3.7e-14
Identities = 42/116 (36%), Positives = 54/116 (46%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
+LC GCGG+I D+Y L +A D +WH CL+C EC L+ TCF +DG YCK DY
Sbjct: 69 ALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRR 127
Query: 65 EKNQFLDENCTCFVRDGKTYCK-RDYV-RLFGTKCEKCNLNFKREDFVMRAKNKIY 118
Q C + + + RD V L C CN D N +Y
Sbjct: 128 FSVQRC-ARCHLGISASEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFGMKDNLVY 182
>RGD|71076 [details] [associations]
symbol:Lhx2 "LIM homeobox 2" species:10116 "Rattus norvegicus"
[GO:0000988 "protein binding transcription factor activity"
evidence=IEA] [GO:0001076 "RNA polymerase II transcription factor
binding transcription factor activity" evidence=ISO] [GO:0001843
"neural tube closure" evidence=IEA;ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=ISO] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0007399 "nervous system
development" evidence=ISO] [GO:0007411 "axon guidance"
evidence=IEA;ISO] [GO:0007420 "brain development" evidence=ISO]
[GO:0007498 "mesoderm development" evidence=IEA;ISO] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0009953 "dorsal/ventral pattern
formation" evidence=IEA;ISO] [GO:0021537 "telencephalon development"
evidence=ISO] [GO:0021978 "telencephalon regionalization"
evidence=IEA;ISO] [GO:0022008 "neurogenesis" evidence=ISO]
[GO:0030182 "neuron differentiation" evidence=IEP;ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IEA;ISO] [GO:0045893
"positive regulation of transcription, DNA-dependent"
evidence=ISO;ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0048646
"anatomical structure formation involved in morphogenesis"
evidence=ISO] [GO:2000678 "negative regulation of transcription
regulatory region DNA binding" evidence=IEA;ISO] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
RGD:71076 GO:GO:0005634 GO:GO:0007411 GO:GO:0045893 GO:GO:0030182
GO:GO:0007498 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0045944 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0001843 GO:GO:0009953
eggNOG:NOG240987 GO:GO:0021978 GO:GO:0000988 GO:GO:2000678
HOGENOM:HOG000034022 HOVERGEN:HBG006262 EMBL:L06804 IPI:IPI00199572
PIR:A47179 UniGene:Rn.81063 ProteinModelPortal:P36198 SMR:P36198
STRING:P36198 UCSC:RGD:71076 InParanoid:P36198 ArrayExpress:P36198
Genevestigator:P36198 GermOnline:ENSRNOG00000010551 Uniprot:P36198
Length = 426
Score = 216 (81.1 bits), Expect = 3.8e-17, P = 3.8e-17
Identities = 43/132 (32%), Positives = 64/132 (48%)
Query: 24 PDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKT 83
P + A L CA C + + D K + R E L+ TCF +DG
Sbjct: 42 PSISSDRAAL-CAGCGGKISDRYYLLAVD-KQWHMRCLKCCECKLNLESELTCFSKDGSI 99
Query: 84 YCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALRE 142
YCK DY R F +C +C+L + VMRA++ +YH+ CF C C K L GD F +++
Sbjct: 100 YCKEDYYRRFSVQRCARCHLGISESEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKD 159
Query: 143 DGLFCKDDHEGM 154
++C+ E +
Sbjct: 160 SLVYCRLHFEAL 171
Score = 187 (70.9 bits), Expect = 5.8e-14, P = 5.8e-14
Identities = 40/101 (39%), Positives = 52/101 (51%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCGG+I D+Y L +A D +WH CL+C EC L+ TCF +DG YCK DY
Sbjct: 48 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYY 106
Query: 63 SSEKNQFLDENCTCFVRDGKTYCK-RDYV-RLFGTKCEKCN 101
Q C + + + + RD V L C CN
Sbjct: 107 RRFSVQRC-ARCHLGISESEMVMRARDLVYHLNCFTCTTCN 146
>UNIPROTKB|P36198 [details] [associations]
symbol:Lhx2 "LIM/homeobox protein Lhx2" species:10116
"Rattus norvegicus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 RGD:71076 GO:GO:0005634 GO:GO:0007411 GO:GO:0045893
GO:GO:0030182 GO:GO:0007498 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0045944 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0001843
GO:GO:0009953 eggNOG:NOG240987 GO:GO:0021978 GO:GO:0000988
GO:GO:2000678 HOGENOM:HOG000034022 HOVERGEN:HBG006262 EMBL:L06804
IPI:IPI00199572 PIR:A47179 UniGene:Rn.81063
ProteinModelPortal:P36198 SMR:P36198 STRING:P36198 UCSC:RGD:71076
InParanoid:P36198 ArrayExpress:P36198 Genevestigator:P36198
GermOnline:ENSRNOG00000010551 Uniprot:P36198
Length = 426
Score = 216 (81.1 bits), Expect = 3.8e-17, P = 3.8e-17
Identities = 43/132 (32%), Positives = 64/132 (48%)
Query: 24 PDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKT 83
P + A L CA C + + D K + R E L+ TCF +DG
Sbjct: 42 PSISSDRAAL-CAGCGGKISDRYYLLAVD-KQWHMRCLKCCECKLNLESELTCFSKDGSI 99
Query: 84 YCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALRE 142
YCK DY R F +C +C+L + VMRA++ +YH+ CF C C K L GD F +++
Sbjct: 100 YCKEDYYRRFSVQRCARCHLGISESEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKD 159
Query: 143 DGLFCKDDHEGM 154
++C+ E +
Sbjct: 160 SLVYCRLHFEAL 171
Score = 187 (70.9 bits), Expect = 5.8e-14, P = 5.8e-14
Identities = 40/101 (39%), Positives = 52/101 (51%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCGG+I D+Y L +A D +WH CL+C EC L+ TCF +DG YCK DY
Sbjct: 48 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYY 106
Query: 63 SSEKNQFLDENCTCFVRDGKTYCK-RDYV-RLFGTKCEKCN 101
Q C + + + + RD V L C CN
Sbjct: 107 RRFSVQRC-ARCHLGISESEMVMRARDLVYHLNCFTCTTCN 146
>UNIPROTKB|E1BM14 [details] [associations]
symbol:LHX2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 KO:K09373 CTD:9355 EMBL:DAAA02032103
IPI:IPI00694370 RefSeq:NP_001178104.1 UniGene:Bt.107855
PRIDE:E1BM14 Ensembl:ENSBTAT00000014582 GeneID:783763
KEGG:bta:783763 NextBio:20926288 Uniprot:E1BM14
Length = 406
Score = 215 (80.7 bits), Expect = 4.2e-17, P = 4.2e-17
Identities = 43/132 (32%), Positives = 64/132 (48%)
Query: 24 PDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKT 83
P + A L CA C + + D K + R E L+ TCF +DG
Sbjct: 43 PSISSDRAAL-CAGCGGKISDRYYLLAVD-KQWHMRCLKCCECKLNLESELTCFSKDGSI 100
Query: 84 YCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALRE 142
YCK DY R F +C +C+L + VMRA++ +YH+ CF C C K L GD F +++
Sbjct: 101 YCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKD 160
Query: 143 DGLFCKDDHEGM 154
++C+ E +
Sbjct: 161 SLVYCRLHFEAL 172
Score = 185 (70.2 bits), Expect = 8.5e-14, P = 8.5e-14
Identities = 31/59 (52%), Positives = 39/59 (66%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
R +LC GCGG+I D+Y L +A D +WH CL+C EC L+ TCF +DG YCK DY
Sbjct: 49 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDY 106
>UNIPROTKB|E2RPC3 [details] [associations]
symbol:LHX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 KO:K09373 CTD:9355 OMA:CNENDAE
EMBL:AAEX03006892 RefSeq:XP_863668.2 Ensembl:ENSCAFT00000032214
GeneID:491340 KEGG:cfa:491340 Uniprot:E2RPC3
Length = 406
Score = 215 (80.7 bits), Expect = 4.2e-17, P = 4.2e-17
Identities = 43/132 (32%), Positives = 64/132 (48%)
Query: 24 PDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKT 83
P + A L CA C + + D K + R E L+ TCF +DG
Sbjct: 43 PSISSDRAAL-CAGCGGKISDRYYLLAVD-KQWHMRCLKCCECKLNLESELTCFSKDGSI 100
Query: 84 YCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALRE 142
YCK DY R F +C +C+L + VMRA++ +YH+ CF C C K L GD F +++
Sbjct: 101 YCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKD 160
Query: 143 DGLFCKDDHEGM 154
++C+ E +
Sbjct: 161 SLVYCRLHFEAL 172
Score = 185 (70.2 bits), Expect = 8.5e-14, P = 8.5e-14
Identities = 31/59 (52%), Positives = 39/59 (66%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
R +LC GCGG+I D+Y L +A D +WH CL+C EC L+ TCF +DG YCK DY
Sbjct: 49 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDY 106
>UNIPROTKB|P50458 [details] [associations]
symbol:LHX2 "LIM/homeobox protein Lhx2" species:9606 "Homo
sapiens" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0000988 "protein binding transcription factor
activity" evidence=IEA] [GO:0001843 "neural tube closure"
evidence=IEA] [GO:0007411 "axon guidance" evidence=IEA] [GO:0007498
"mesoderm development" evidence=IEA] [GO:0009953 "dorsal/ventral
pattern formation" evidence=IEA] [GO:0021978 "telencephalon
regionalization" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:2000678 "negative regulation of transcription regulatory region
DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0007411 GO:GO:0045893
GO:GO:0007498 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0045944 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0001843 GO:GO:0009953
KO:K09373 GO:GO:0021978 GO:GO:0000988 eggNOG:COG5576 GO:GO:2000678
EMBL:U11701 EMBL:BC093662 EMBL:BC112185 EMBL:AK094511 EMBL:AF124735
IPI:IPI00032144 RefSeq:NP_004780.3 UniGene:Hs.696425
ProteinModelPortal:P50458 SMR:P50458 STRING:P50458
PhosphoSite:P50458 DMDM:8247936 PaxDb:P50458 PRIDE:P50458
DNASU:9355 Ensembl:ENST00000373615 GeneID:9355 KEGG:hsa:9355
UCSC:uc004boe.1 CTD:9355 GeneCards:GC09P126763 HGNC:HGNC:6594
MIM:603759 neXtProt:NX_P50458 PharmGKB:PA30365 HOGENOM:HOG000034022
HOVERGEN:HBG006262 InParanoid:P50458 OrthoDB:EOG4G4GQK
PhylomeDB:P50458 ChiTaRS:LHX2 GenomeRNAi:9355 NextBio:35033
Bgee:P50458 CleanEx:HS_LHX2 Genevestigator:P50458
GermOnline:ENSG00000106689 Uniprot:P50458
Length = 406
Score = 215 (80.7 bits), Expect = 4.2e-17, P = 4.2e-17
Identities = 43/132 (32%), Positives = 64/132 (48%)
Query: 24 PDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKT 83
P + A L CA C + + D K + R E L+ TCF +DG
Sbjct: 43 PSISSDRAAL-CAGCGGKISDRYYLLAVD-KQWHMRCLKCCECKLNLESELTCFSKDGSI 100
Query: 84 YCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALRE 142
YCK DY R F +C +C+L + VMRA++ +YH+ CF C C K L GD F +++
Sbjct: 101 YCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKD 160
Query: 143 DGLFCKDDHEGM 154
++C+ E +
Sbjct: 161 SLVYCRLHFEAL 172
Score = 185 (70.2 bits), Expect = 8.5e-14, P = 8.5e-14
Identities = 31/59 (52%), Positives = 39/59 (66%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
R +LC GCGG+I D+Y L +A D +WH CL+C EC L+ TCF +DG YCK DY
Sbjct: 49 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDY 106
>UNIPROTKB|C4TJC6 [details] [associations]
symbol:Lhx2 "LIM homeobox protein 2" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:2000678 "negative
regulation of transcription regulatory region DNA binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0021978
"telencephalon regionalization" evidence=IEA] [GO:0009953
"dorsal/ventral pattern formation" evidence=IEA] [GO:0007498
"mesoderm development" evidence=IEA] [GO:0007411 "axon guidance"
evidence=IEA] [GO:0001843 "neural tube closure" evidence=IEA]
[GO:0000988 "protein binding transcription factor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0007411 GO:GO:0007498 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0045944 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0001843 GO:GO:0009953
GeneTree:ENSGT00680000099670 KO:K09373 GO:GO:0021978 GO:GO:0000988
GO:GO:2000678 CTD:9355 OrthoDB:EOG4G4GQK OMA:CNENDAE EMBL:CU570921
EMBL:AB473486 RefSeq:NP_001163990.1 UniGene:Ssc.71156 STRING:C4TJC6
Ensembl:ENSSSCT00000006141 GeneID:100156063 KEGG:ssc:100156063
Uniprot:C4TJC6
Length = 406
Score = 215 (80.7 bits), Expect = 4.2e-17, P = 4.2e-17
Identities = 43/132 (32%), Positives = 64/132 (48%)
Query: 24 PDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKT 83
P + A L CA C + + D K + R E L+ TCF +DG
Sbjct: 43 PSISSDRAAL-CAGCGGKISDRYYLLAVD-KQWHMRCLKCCECKLNLESELTCFSKDGSI 100
Query: 84 YCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALRE 142
YCK DY R F +C +C+L + VMRA++ +YH+ CF C C K L GD F +++
Sbjct: 101 YCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKD 160
Query: 143 DGLFCKDDHEGM 154
++C+ E +
Sbjct: 161 SLVYCRLHFEAL 172
Score = 185 (70.2 bits), Expect = 8.5e-14, P = 8.5e-14
Identities = 31/59 (52%), Positives = 39/59 (66%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
R +LC GCGG+I D+Y L +A D +WH CL+C EC L+ TCF +DG YCK DY
Sbjct: 49 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDY 106
>MGI|MGI:96785 [details] [associations]
symbol:Lhx2 "LIM homeobox protein 2" species:10090 "Mus
musculus" [GO:0001076 "RNA polymerase II transcription factor
binding transcription factor activity" evidence=IPI] [GO:0001843
"neural tube closure" evidence=IMP] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005622 "intracellular" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0007399 "nervous
system development" evidence=IMP] [GO:0007411 "axon guidance"
evidence=IMP] [GO:0007420 "brain development" evidence=IMP]
[GO:0007498 "mesoderm development" evidence=IMP] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0009953 "dorsal/ventral pattern
formation" evidence=IMP] [GO:0021537 "telencephalon development"
evidence=IMP] [GO:0021978 "telencephalon regionalization"
evidence=IGI;IMP] [GO:0022008 "neurogenesis" evidence=IDA]
[GO:0030182 "neuron differentiation" evidence=IMP] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IGI] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0048646 "anatomical structure formation
involved in morphogenesis" evidence=IMP] [GO:2000678 "negative
regulation of transcription regulatory region DNA binding"
evidence=IGI] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 MGI:MGI:96785 GO:GO:0005634 GO:GO:0007411
GO:GO:0007498 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0045944 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0001843 GO:GO:0009953
eggNOG:NOG240987 GeneTree:ENSGT00680000099670 KO:K09373
GO:GO:0021978 GO:GO:0000988 GO:GO:2000678 CTD:9355
HOGENOM:HOG000034022 HOVERGEN:HBG006262 OrthoDB:EOG4G4GQK
EMBL:AF124734 EMBL:BC055741 IPI:IPI00129385 RefSeq:NP_034840.1
UniGene:Mm.142856 ProteinModelPortal:Q9Z0S2 SMR:Q9Z0S2
STRING:Q9Z0S2 PhosphoSite:Q9Z0S2 PRIDE:Q9Z0S2
Ensembl:ENSMUST00000000253 GeneID:16870 KEGG:mmu:16870
InParanoid:Q9Z0S2 OMA:CNENDAE NextBio:290834 Bgee:Q9Z0S2
CleanEx:MM_LHX2 Genevestigator:Q9Z0S2 GermOnline:ENSMUSG00000000247
Uniprot:Q9Z0S2
Length = 406
Score = 215 (80.7 bits), Expect = 4.2e-17, P = 4.2e-17
Identities = 43/132 (32%), Positives = 64/132 (48%)
Query: 24 PDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKT 83
P + A L CA C + + D K + R E L+ TCF +DG
Sbjct: 43 PSISSDRAAL-CAGCGGKISDRYYLLAVD-KQWHMRCLKCCECKLNLESELTCFSKDGSI 100
Query: 84 YCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALRE 142
YCK DY R F +C +C+L + VMRA++ +YH+ CF C C K L GD F +++
Sbjct: 101 YCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKD 160
Query: 143 DGLFCKDDHEGM 154
++C+ E +
Sbjct: 161 SLVYCRLHFEAL 172
Score = 185 (70.2 bits), Expect = 8.5e-14, P = 8.5e-14
Identities = 31/59 (52%), Positives = 39/59 (66%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
R +LC GCGG+I D+Y L +A D +WH CL+C EC L+ TCF +DG YCK DY
Sbjct: 49 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDY 106
>UNIPROTKB|D4A380 [details] [associations]
symbol:Lhx2 "LIM/homeobox protein Lhx2" species:10116
"Rattus norvegicus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 RGD:71076 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GeneTree:ENSGT00680000099670 KO:K09373 CTD:9355
OrthoDB:EOG4G4GQK UniGene:Rn.81063 EMBL:CH473983 IPI:IPI00950401
RefSeq:NP_001100041.1 SMR:D4A380 Ensembl:ENSRNOT00000064507
GeneID:296706 KEGG:rno:296706 NextBio:641689 Uniprot:D4A380
Length = 406
Score = 215 (80.7 bits), Expect = 4.2e-17, P = 4.2e-17
Identities = 43/132 (32%), Positives = 64/132 (48%)
Query: 24 PDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKT 83
P + A L CA C + + D K + R E L+ TCF +DG
Sbjct: 43 PSISSDRAAL-CAGCGGKISDRYYLLAVD-KQWHMRCLKCCECKLNLESELTCFSKDGSI 100
Query: 84 YCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALRE 142
YCK DY R F +C +C+L + VMRA++ +YH+ CF C C K L GD F +++
Sbjct: 101 YCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKD 160
Query: 143 DGLFCKDDHEGM 154
++C+ E +
Sbjct: 161 SLVYCRLHFEAL 172
Score = 185 (70.2 bits), Expect = 8.5e-14, P = 8.5e-14
Identities = 31/59 (52%), Positives = 39/59 (66%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
R +LC GCGG+I D+Y L +A D +WH CL+C EC L+ TCF +DG YCK DY
Sbjct: 49 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDY 106
>UNIPROTKB|G3N0G6 [details] [associations]
symbol:LHX2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:2000678 "negative
regulation of transcription regulatory region DNA binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0021978
"telencephalon regionalization" evidence=IEA] [GO:0009953
"dorsal/ventral pattern formation" evidence=IEA] [GO:0007498
"mesoderm development" evidence=IEA] [GO:0007411 "axon guidance"
evidence=IEA] [GO:0001843 "neural tube closure" evidence=IEA]
[GO:0000988 "protein binding transcription factor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0007411 GO:GO:0007498 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0045944 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0001843 GO:GO:0009953
GeneTree:ENSGT00680000099670 GO:GO:0021978 GO:GO:0000988
GO:GO:2000678 OMA:CNENDAE EMBL:DAAA02032103
Ensembl:ENSBTAT00000065104 Uniprot:G3N0G6
Length = 427
Score = 215 (80.7 bits), Expect = 4.9e-17, P = 4.9e-17
Identities = 43/132 (32%), Positives = 64/132 (48%)
Query: 24 PDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKT 83
P + A L CA C + + D K + R E L+ TCF +DG
Sbjct: 43 PSISSDRAAL-CAGCGGKISDRYYLLAVD-KQWHMRCLKCCECKLNLESELTCFSKDGSI 100
Query: 84 YCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALRE 142
YCK DY R F +C +C+L + VMRA++ +YH+ CF C C K L GD F +++
Sbjct: 101 YCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKD 160
Query: 143 DGLFCKDDHEGM 154
++C+ E +
Sbjct: 161 SLVYCRLHFEAL 172
Score = 185 (70.2 bits), Expect = 9.7e-14, P = 9.7e-14
Identities = 31/59 (52%), Positives = 39/59 (66%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
R +LC GCGG+I D+Y L +A D +WH CL+C EC L+ TCF +DG YCK DY
Sbjct: 49 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDY 106
>RGD|727956 [details] [associations]
symbol:Lhx9 "LIM homeobox 9" species:10116 "Rattus norvegicus"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0003714 "transcription corepressor
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008045 "motor neuron axon guidance" evidence=ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IEA;ISO] [GO:0008584 "male gonad development"
evidence=IEA;ISO] [GO:0008585 "female gonad development"
evidence=IEA;ISO] [GO:0035262 "gonad morphogenesis"
evidence=IEA;ISO] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=ISS] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 EMBL:AY273890
RGD:727956 GO:GO:0005634 GO:GO:0003714 GO:GO:0045892 GO:GO:0008585
GO:GO:0046872 GO:GO:0008283 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0008584
Gene3D:2.10.110.10 GO:GO:0008045 eggNOG:NOG240987
GeneTree:ENSGT00680000099670 KO:K09373 GO:GO:0035262
HOGENOM:HOG000034022 HOVERGEN:HBG006262 OMA:AAMLFHG HSSP:P61969
CTD:56956 EMBL:BC128722 EMBL:AF527619 IPI:IPI00208402
IPI:IPI00327074 RefSeq:NP_852032.1 UniGene:Rn.150335
ProteinModelPortal:Q80W90 SMR:Q80W90 STRING:Q80W90
Ensembl:ENSRNOT00000013873 GeneID:289048 KEGG:rno:289048
UCSC:RGD:727956 InParanoid:Q811Z4 NextBio:629139
ArrayExpress:Q80W90 Genevestigator:Q80W90 Uniprot:Q80W90
Length = 388
Score = 213 (80.0 bits), Expect = 5.9e-17, P = 5.9e-17
Identities = 40/119 (33%), Positives = 59/119 (49%)
Query: 35 CAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFG 94
CA C + + D K + R E L+ TCF +DG YCK DY R F
Sbjct: 62 CAGCGGKISDRYYLLAVD-KQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFS 120
Query: 95 T-KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHE 152
+C +C+L + VMRA++ +YH+ CF C C K L GD F +++ ++C+ E
Sbjct: 121 VQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 179
Score = 184 (69.8 bits), Expect = 9.7e-14, P = 9.7e-14
Identities = 30/57 (52%), Positives = 38/57 (66%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+LC GCGG+I D+Y L +A D +WH CL+C EC L+ TCF +DG YCK DY
Sbjct: 60 ALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDY 115
>UNIPROTKB|Q80W90 [details] [associations]
symbol:Lhx9 "LIM/homeobox protein Lhx9" species:10116
"Rattus norvegicus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 EMBL:AY273890 RGD:727956 GO:GO:0005634 GO:GO:0003714
GO:GO:0045892 GO:GO:0008585 GO:GO:0046872 GO:GO:0008283
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0008584 Gene3D:2.10.110.10 GO:GO:0008045
eggNOG:NOG240987 GeneTree:ENSGT00680000099670 KO:K09373
GO:GO:0035262 HOGENOM:HOG000034022 HOVERGEN:HBG006262 OMA:AAMLFHG
HSSP:P61969 CTD:56956 EMBL:BC128722 EMBL:AF527619 IPI:IPI00208402
IPI:IPI00327074 RefSeq:NP_852032.1 UniGene:Rn.150335
ProteinModelPortal:Q80W90 SMR:Q80W90 STRING:Q80W90
Ensembl:ENSRNOT00000013873 GeneID:289048 KEGG:rno:289048
UCSC:RGD:727956 InParanoid:Q811Z4 NextBio:629139
ArrayExpress:Q80W90 Genevestigator:Q80W90 Uniprot:Q80W90
Length = 388
Score = 213 (80.0 bits), Expect = 5.9e-17, P = 5.9e-17
Identities = 40/119 (33%), Positives = 59/119 (49%)
Query: 35 CAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFG 94
CA C + + D K + R E L+ TCF +DG YCK DY R F
Sbjct: 62 CAGCGGKISDRYYLLAVD-KQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFS 120
Query: 95 T-KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHE 152
+C +C+L + VMRA++ +YH+ CF C C K L GD F +++ ++C+ E
Sbjct: 121 VQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 179
Score = 184 (69.8 bits), Expect = 9.7e-14, P = 9.7e-14
Identities = 30/57 (52%), Positives = 38/57 (66%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+LC GCGG+I D+Y L +A D +WH CL+C EC L+ TCF +DG YCK DY
Sbjct: 60 ALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDY 115
>UNIPROTKB|P36200 [details] [associations]
symbol:lhx3 "LIM/homeobox protein Lhx3" species:8355
"Xenopus laevis" [GO:0005515 "protein binding" evidence=IPI]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 KO:K09374 HOVERGEN:HBG006263
CTD:8022 EMBL:Z22702 EMBL:Z11589 PIR:S38821 RefSeq:NP_001081623.1
UniGene:Xl.32 ProteinModelPortal:P36200 SMR:P36200 GeneID:397959
KEGG:xla:397959 Xenbase:XB-GENE-865930 Uniprot:P36200
Length = 395
Score = 213 (80.0 bits), Expect = 6.3e-17, P = 6.3e-17
Identities = 45/120 (37%), Positives = 62/120 (51%)
Query: 34 RCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLF 93
+CA C+Q + + V D + K + + Q ++ CF R YCK D+ + F
Sbjct: 27 QCAGCNQHIVDRFILKVLDRHWHSKCLKCNDCQIQLAEK---CFSRGDSVYCKDDFFKRF 83
Query: 94 GTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDG-LFCKDDHE 152
GTKC C V RA+ +YH+ CF C+VC +QL GDEF L ED L CK D+E
Sbjct: 84 GTKCAACQQGIPPTQVVRRAQEFVYHLHCFACIVCKRQLATGDEFYLMEDSRLVCKADYE 143
Score = 127 (49.8 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 24/55 (43%), Positives = 31/55 (56%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
C GC I D++IL+V D WH+ CL+C +C L E C F R YCK D+
Sbjct: 28 CAGCNQHIVDRFILKVL-DRHWHSKCLKCNDCQIQLAEKC--FSRGDSVYCKDDF 79
Score = 38 (18.4 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 111 MRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
M N IY+ V G+Q F+L G+ +D + +
Sbjct: 264 MNHSNGIYNSLNDSSPVLGRQAGSNGPFSLEHGGIPTQDQYHNL 307
>UNIPROTKB|E2R2S5 [details] [associations]
symbol:LHX9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0035262
"gonad morphogenesis" evidence=IEA] [GO:0008585 "female gonad
development" evidence=IEA] [GO:0008584 "male gonad development"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0008585 GO:GO:0046872
GO:GO:0008283 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0008584 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 KO:K09373 GO:GO:0035262 OMA:AAMLFHG
CTD:56956 EMBL:AAEX03005042 RefSeq:XP_848787.1 SMR:E2R2S5
Ensembl:ENSCAFT00000018021 GeneID:490257 KEGG:cfa:490257
NextBio:20863313 Uniprot:E2R2S5
Length = 397
Score = 213 (80.0 bits), Expect = 6.4e-17, P = 6.4e-17
Identities = 40/119 (33%), Positives = 59/119 (49%)
Query: 35 CAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFG 94
CA C + + D K + R E L+ TCF +DG YCK DY R F
Sbjct: 71 CAGCGGKISDRYYLLAVD-KQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFS 129
Query: 95 T-KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHE 152
+C +C+L + VMRA++ +YH+ CF C C K L GD F +++ ++C+ E
Sbjct: 130 VQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 188
Score = 184 (69.8 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 30/57 (52%), Positives = 38/57 (66%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+LC GCGG+I D+Y L +A D +WH CL+C EC L+ TCF +DG YCK DY
Sbjct: 69 ALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDY 124
>UNIPROTKB|Q9NQ69 [details] [associations]
symbol:LHX9 "LIM/homeobox protein Lhx9" species:9606 "Homo
sapiens" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=IEA]
[GO:0008584 "male gonad development" evidence=IEA] [GO:0008585
"female gonad development" evidence=IEA] [GO:0035262 "gonad
morphogenesis" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008045 "motor neuron axon guidance" evidence=ISS] [GO:0003714
"transcription corepressor activity" evidence=ISS] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=ISS]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0003714 GO:GO:0045892
GO:GO:0008585 GO:GO:0046872 GO:GO:0008283 GO:GO:0043565
GO:GO:0008270 EMBL:CH471067 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0008584 Gene3D:2.10.110.10 GO:GO:0008045
eggNOG:NOG240987 KO:K09373 GO:GO:0035262 HOVERGEN:HBG006262
OrthoDB:EOG4G4GQK OMA:AAMLFHG CTD:56956 EMBL:AJ277915 EMBL:AJ277916
EMBL:AJ277917 EMBL:AJ277918 EMBL:AJ277919 EMBL:AJ277920
EMBL:AJ296272 EMBL:AY273889 EMBL:AL590115 EMBL:BC131622
IPI:IPI00328729 IPI:IPI00396103 IPI:IPI00642345 IPI:IPI00642361
RefSeq:NP_001014434.1 RefSeq:NP_064589.2 UniGene:Hs.442578
UniGene:Hs.706475 PDB:2DMQ PDBsum:2DMQ ProteinModelPortal:Q9NQ69
SMR:Q9NQ69 STRING:Q9NQ69 PhosphoSite:Q9NQ69 DMDM:224471883
PRIDE:Q9NQ69 Ensembl:ENST00000337020 Ensembl:ENST00000367387
Ensembl:ENST00000367390 Ensembl:ENST00000367391 GeneID:56956
KEGG:hsa:56956 UCSC:uc001gui.1 UCSC:uc001guk.1
GeneCards:GC01P197881 HGNC:HGNC:14222 HPA:HPA009695 MIM:606066
neXtProt:NX_Q9NQ69 PharmGKB:PA30368 PhylomeDB:Q9NQ69
EvolutionaryTrace:Q9NQ69 GenomeRNAi:56956 NextBio:62575
ArrayExpress:Q9NQ69 Bgee:Q9NQ69 CleanEx:HS_LHX9
Genevestigator:Q9NQ69 GermOnline:ENSG00000143355 Uniprot:Q9NQ69
Length = 397
Score = 213 (80.0 bits), Expect = 6.4e-17, P = 6.4e-17
Identities = 40/119 (33%), Positives = 59/119 (49%)
Query: 35 CAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFG 94
CA C + + D K + R E L+ TCF +DG YCK DY R F
Sbjct: 71 CAGCGGKISDRYYLLAVD-KQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFS 129
Query: 95 T-KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHE 152
+C +C+L + VMRA++ +YH+ CF C C K L GD F +++ ++C+ E
Sbjct: 130 VQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 188
Score = 184 (69.8 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 30/57 (52%), Positives = 38/57 (66%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+LC GCGG+I D+Y L +A D +WH CL+C EC L+ TCF +DG YCK DY
Sbjct: 69 ALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDY 124
>MGI|MGI:1316721 [details] [associations]
symbol:Lhx9 "LIM homeobox protein 9" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IMP] [GO:0008584 "male gonad development" evidence=IMP]
[GO:0008585 "female gonad development" evidence=IMP] [GO:0035262
"gonad morphogenesis" evidence=IMP] [GO:0043565 "sequence-specific
DNA binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 MGI:MGI:1316721 GO:GO:0005634 GO:GO:0003714
GO:GO:0045892 GO:GO:0008585 GO:GO:0046872 GO:GO:0008283
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0008584 Gene3D:2.10.110.10 GO:GO:0008045
eggNOG:NOG240987 GeneTree:ENSGT00680000099670 KO:K09373
GO:GO:0035262 HOGENOM:HOG000034022 HOVERGEN:HBG006262 OMA:AAMLFHG
CTD:56956 EMBL:AJ243851 EMBL:AJ243852 EMBL:AJ243853 EMBL:AJ243854
EMBL:AJ243855 EMBL:AJ243856 EMBL:AJ243857 EMBL:AC154398
EMBL:BC072623 EMBL:AF134761 EMBL:AF113518 IPI:IPI00124662
IPI:IPI00227842 IPI:IPI00626920 IPI:IPI00830796
RefSeq:NP_001020736.1 RefSeq:NP_001036042.1 RefSeq:NP_034844.1
UniGene:Mm.250732 ProteinModelPortal:Q9WUH2 SMR:Q9WUH2
IntAct:Q9WUH2 MINT:MINT-1340747 STRING:Q9WUH2 PRIDE:Q9WUH2
Ensembl:ENSMUST00000019374 Ensembl:ENSMUST00000046870
Ensembl:ENSMUST00000093486 Ensembl:ENSMUST00000112026
Ensembl:ENSMUST00000112030 GeneID:16876 KEGG:mmu:16876
UCSC:uc007cvr.1 UCSC:uc007cvs.1 UCSC:uc007cvu.1 ChiTaRS:LHX9
NextBio:290864 Bgee:Q9WUH2 CleanEx:MM_LHX9 Genevestigator:Q9WUH2
GermOnline:ENSMUSG00000019230 Uniprot:Q9WUH2
Length = 397
Score = 213 (80.0 bits), Expect = 6.4e-17, P = 6.4e-17
Identities = 40/119 (33%), Positives = 59/119 (49%)
Query: 35 CAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFG 94
CA C + + D K + R E L+ TCF +DG YCK DY R F
Sbjct: 71 CAGCGGKISDRYYLLAVD-KQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFS 129
Query: 95 T-KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHE 152
+C +C+L + VMRA++ +YH+ CF C C K L GD F +++ ++C+ E
Sbjct: 130 VQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 188
Score = 184 (69.8 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 30/57 (52%), Positives = 38/57 (66%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+LC GCGG+I D+Y L +A D +WH CL+C EC L+ TCF +DG YCK DY
Sbjct: 69 ALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDY 124
>UNIPROTKB|Q5ISK2 [details] [associations]
symbol:Q5ISK2 "LIM homeobox protein 1" species:9541 "Macaca
fascicularis" [GO:0001071 "nucleic acid binding transcription
factor activity" evidence=ISS] [GO:0001655 "urogenital system
development" evidence=ISS] [GO:0001657 "ureteric bud development"
evidence=ISS] [GO:0001702 "gastrulation with mouth forming second"
evidence=ISS] [GO:0001705 "ectoderm formation" evidence=ISS]
[GO:0001706 "endoderm formation" evidence=ISS] [GO:0001764 "neuron
migration" evidence=ISS] [GO:0001822 "kidney development"
evidence=ISS] [GO:0003714 "transcription corepressor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0007267 "cell-cell signaling" evidence=ISS] [GO:0007389
"pattern specification process" evidence=ISS] [GO:0008045 "motor
neuron axon guidance" evidence=ISS] [GO:0009653 "anatomical
structure morphogenesis" evidence=ISS] [GO:0009791 "post-embryonic
development" evidence=ISS] [GO:0009880 "embryonic pattern
specification" evidence=ISS] [GO:0009948 "anterior/posterior axis
specification" evidence=ISS] [GO:0009952 "anterior/posterior
pattern specification" evidence=ISS] [GO:0009953 "dorsal/ventral
pattern formation" evidence=ISS] [GO:0010468 "regulation of gene
expression" evidence=ISS] [GO:0010842 "retina layer formation"
evidence=ISS] [GO:0021527 "spinal cord association neuron
differentiation" evidence=ISS] [GO:0021549 "cerebellum development"
evidence=ISS] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=ISS] [GO:0021871 "forebrain
regionalization" evidence=ISS] [GO:0021937 "cerebellar Purkinje
cell-granule cell precursor cell signaling involved in regulation
of granule cell precursor cell proliferation" evidence=ISS]
[GO:0035846 "oviduct epithelium development" evidence=ISS]
[GO:0035847 "uterine epithelium development" evidence=ISS]
[GO:0040019 "positive regulation of embryonic development"
evidence=ISS] [GO:0043234 "protein complex" evidence=ISS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0048646 "anatomical structure
formation involved in morphogenesis" evidence=ISS] [GO:0048703
"embryonic viscerocranium morphogenesis" evidence=ISS] [GO:0060059
"embryonic retina morphogenesis in camera-type eye" evidence=ISS]
[GO:0060065 "uterus development" evidence=ISS] [GO:0060066 "oviduct
development" evidence=ISS] [GO:0060067 "cervix development"
evidence=ISS] [GO:0060068 "vagina development" evidence=ISS]
[GO:0060322 "head development" evidence=ISS] [GO:0060429
"epithelium development" evidence=ISS] [GO:0061205 "paramesonephric
duct development" evidence=ISS] [GO:0072049 "comma-shaped body
morphogenesis" evidence=ISS] [GO:0072050 "S-shaped body
morphogenesis" evidence=ISS] [GO:0072077 "renal vesicle
morphogenesis" evidence=ISS] [GO:0072178 "nephric duct
morphogenesis" evidence=ISS] [GO:0090009 "primitive streak
formation" evidence=ISS] [GO:0090190 "positive regulation of
branching involved in ureteric bud morphogenesis" evidence=ISS]
[GO:2000543 "positive regulation of gastrulation" evidence=ISS]
[GO:2000744 "positive regulation of anterior head development"
evidence=ISS] [GO:2000768 "positive regulation of nephron tubule
epithelial cell differentiation" evidence=ISS] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0003714 GO:GO:0045892 GO:GO:0001764
GO:GO:0045893 GO:GO:0043234 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0006366 GO:GO:0009791
GO:GO:0090190 GO:GO:0010842 GO:GO:0009953 GO:GO:0040019
GO:GO:0009880 GO:GO:0001657 GO:GO:0021527 GO:GO:0021702
GO:GO:0060068 GO:GO:0090009 GO:GO:0060059 GO:GO:2000768
GO:GO:0048703 GO:GO:0060322 GO:GO:0001071 GO:GO:0001706
GO:GO:0001705 GO:GO:2000543 GO:GO:0072049 GO:GO:0072050
HOVERGEN:HBG006263 GO:GO:0021937 GO:GO:0021871 GO:GO:0072178
GO:GO:0061205 GO:GO:2000744 GO:GO:0072077 GO:GO:0060067
GO:GO:0035846 GO:GO:0035847 EMBL:AY650378 ProteinModelPortal:Q5ISK2
Uniprot:Q5ISK2
Length = 403
Score = 213 (80.0 bits), Expect = 6.8e-17, P = 6.8e-17
Identities = 35/77 (45%), Positives = 50/77 (64%)
Query: 76 CFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPG 135
CF R+GK YCK D+ R FGTKC C D V RA++K++H+ CF C++C KQL G
Sbjct: 39 CFSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTG 98
Query: 136 DEFALREDGLF-CKDDH 151
+E + ++ F CK+D+
Sbjct: 99 EELYIIDENKFVCKEDY 115
Score = 135 (52.6 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
C GC I D+++L V D WH C++C EC L E C F R+GK YCK D+
Sbjct: 1 CAGCKRPILDRFLLNVL-DRAWHVKCVQCCECKCNLTEKC--FSREGKLYCKNDF 52
>UNIPROTKB|F1NX79 [details] [associations]
symbol:LHX1 "LIM/homeobox protein Lhx1" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0072049
"comma-shaped body morphogenesis" evidence=IEA] [GO:0072283
"metanephric renal vesicle morphogenesis" evidence=IEA] [GO:0072284
"metanephric S-shaped body morphogenesis" evidence=IEA] [GO:0090009
"primitive streak formation" evidence=IEA] [GO:0090190 "positive
regulation of branching involved in ureteric bud morphogenesis"
evidence=IEA] [GO:2000543 "positive regulation of gastrulation"
evidence=IEA] [GO:2000744 "positive regulation of anterior head
development" evidence=IEA] [GO:2000768 "positive regulation of
nephron tubule epithelial cell differentiation" evidence=IEA]
[GO:0001658 "branching involved in ureteric bud morphogenesis"
evidence=IEA] [GO:0001705 "ectoderm formation" evidence=IEA]
[GO:0001706 "endoderm formation" evidence=IEA] [GO:0001764 "neuron
migration" evidence=IEA] [GO:0001823 "mesonephros development"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0008045 "motor neuron axon guidance"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0009953 "dorsal/ventral pattern formation"
evidence=IEA] [GO:0021517 "ventral spinal cord development"
evidence=IEA] [GO:0021527 "spinal cord association neuron
differentiation" evidence=IEA] [GO:0021537 "telencephalon
development" evidence=IEA] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=IEA] [GO:0021871 "forebrain
regionalization" evidence=IEA] [GO:0021937 "cerebellar Purkinje
cell-granule cell precursor cell signaling involved in regulation
of granule cell precursor cell proliferation" evidence=IEA]
[GO:0032525 "somite rostral/caudal axis specification"
evidence=IEA] [GO:0035846 "oviduct epithelium development"
evidence=IEA] [GO:0035847 "uterine epithelium development"
evidence=IEA] [GO:0035849 "nephric duct elongation" evidence=IEA]
[GO:0035852 "horizontal cell localization" evidence=IEA]
[GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0043234 "protein complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0048703 "embryonic viscerocranium
morphogenesis" evidence=IEA] [GO:0048793 "pronephros development"
evidence=IEA] [GO:0060059 "embryonic retina morphogenesis in
camera-type eye" evidence=IEA] [GO:0060067 "cervix development"
evidence=IEA] [GO:0060068 "vagina development" evidence=IEA]
[GO:0060322 "head development" evidence=IEA] [GO:0061205
"paramesonephric duct development" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0045892 GO:GO:0045893 GO:GO:0043234
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0006366
GO:GO:0090190 GO:GO:0040019 GO:GO:2000768 GO:GO:2000543
GeneTree:ENSGT00700000104177 IPI:IPI00581331 GO:GO:0021937
GO:GO:2000744 OMA:PSEMNEG EMBL:AADN02025742 EMBL:AADN02025743
EMBL:AADN02025744 Ensembl:ENSGALT00000008686 Uniprot:F1NX79
Length = 406
Score = 213 (80.0 bits), Expect = 6.9e-17, P = 6.9e-17
Identities = 35/77 (45%), Positives = 50/77 (64%)
Query: 76 CFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPG 135
CF R+GK YCK D+ R FGTKC C D V RA++K++H+ CF C++C KQL G
Sbjct: 42 CFSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTG 101
Query: 136 DEFALREDGLF-CKDDH 151
+E + ++ F CK+D+
Sbjct: 102 EELYIIDENKFVCKEDY 118
Score = 135 (52.6 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
C GC I D+++L V D WH C++C EC L E C F R+GK YCK D+
Sbjct: 4 CAGCKRPILDRFLLNVL-DRAWHVKCVQCCECKCNLTEKC--FSREGKLYCKNDF 55
>UNIPROTKB|P53411 [details] [associations]
symbol:LHX1 "LIM/homeobox protein Lhx1" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0048703 "embryonic viscerocranium morphogenesis"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA] [GO:0001655
"urogenital system development" evidence=ISS] [GO:0001657 "ureteric
bud development" evidence=ISS] [GO:0001702 "gastrulation with mouth
forming second" evidence=ISS] [GO:0001705 "ectoderm formation"
evidence=ISS] [GO:2000744 "positive regulation of anterior head
development" evidence=ISS] [GO:0072178 "nephric duct morphogenesis"
evidence=ISS] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0001071 "nucleic acid binding
transcription factor activity" evidence=ISS;NAS] [GO:0090190
"positive regulation of branching involved in ureteric bud
morphogenesis" evidence=ISS] [GO:0001822 "kidney development"
evidence=ISS] [GO:0007267 "cell-cell signaling" evidence=ISS]
[GO:0007389 "pattern specification process" evidence=ISS]
[GO:0009653 "anatomical structure morphogenesis" evidence=ISS]
[GO:0009880 "embryonic pattern specification" evidence=ISS]
[GO:0009948 "anterior/posterior axis specification" evidence=ISS]
[GO:0009952 "anterior/posterior pattern specification"
evidence=ISS] [GO:0009953 "dorsal/ventral pattern formation"
evidence=ISS] [GO:0021549 "cerebellum development" evidence=ISS]
[GO:0021702 "cerebellar Purkinje cell differentiation"
evidence=ISS] [GO:0021871 "forebrain regionalization" evidence=ISS]
[GO:0021937 "cerebellar Purkinje cell-granule cell precursor cell
signaling involved in regulation of granule cell precursor cell
proliferation" evidence=ISS] [GO:2000768 "positive regulation of
nephron tubule epithelial cell differentiation" evidence=ISS]
[GO:0072049 "comma-shaped body morphogenesis" evidence=ISS]
[GO:0072050 "S-shaped body morphogenesis" evidence=ISS] [GO:0072077
"renal vesicle morphogenesis" evidence=ISS] [GO:0061205
"paramesonephric duct development" evidence=ISS] [GO:0060059
"embryonic retina morphogenesis in camera-type eye" evidence=ISS]
[GO:0010842 "retina layer formation" evidence=ISS] [GO:0048646
"anatomical structure formation involved in morphogenesis"
evidence=ISS] [GO:0060322 "head development" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0043234 "protein complex" evidence=ISS]
[GO:0003714 "transcription corepressor activity" evidence=IDA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0021517 "ventral spinal cord development"
evidence=IEP] [GO:0001764 "neuron migration" evidence=ISS]
[GO:0090009 "primitive streak formation" evidence=ISS] [GO:0001706
"endoderm formation" evidence=ISS] [GO:0060429 "epithelium
development" evidence=ISS] [GO:0021522 "spinal cord motor neuron
differentiation" evidence=IEP] [GO:0008045 "motor neuron axon
guidance" evidence=IDA] [GO:0040019 "positive regulation of
embryonic development" evidence=ISS] [GO:2000543 "positive
regulation of gastrulation" evidence=ISS] [GO:0009791
"post-embryonic development" evidence=ISS] [GO:0010468 "regulation
of gene expression" evidence=ISS] [GO:0021527 "spinal cord
association neuron differentiation" evidence=ISS] [GO:0072179
"nephric duct formation" evidence=NAS] [GO:2001141 "regulation of
RNA biosynthetic process" evidence=NAS] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0003714 GO:GO:0045892 GO:GO:0001764
GO:GO:0045893 GO:GO:0043234 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0021522 GO:GO:0006366
GO:GO:0009791 GO:GO:0090190 GO:GO:0010842 GO:GO:0009953
GO:GO:0040019 GO:GO:0009880 GO:GO:0001657 GO:GO:0021527
GO:GO:0021702 GO:GO:0090009 GO:GO:0060059 GO:GO:2000768
GO:GO:0048703 GO:GO:0060322 GO:GO:0001071 GO:GO:0001706
GO:GO:0001705 GO:GO:2000543 GO:GO:0072049 GO:GO:0072050 EMBL:L35569
IPI:IPI00581331 PIR:I50375 RefSeq:NP_990744.1 UniGene:Gga.789
ProteinModelPortal:P53411 SMR:P53411 STRING:P53411 GeneID:396381
KEGG:gga:396381 CTD:3975 eggNOG:NOG257130 HOGENOM:HOG000231630
HOVERGEN:HBG006263 InParanoid:P53411 KO:K09372 OrthoDB:EOG405S1F
NextBio:20816423 GO:GO:0021937 GO:GO:0021871 GO:GO:0072178
GO:GO:0061205 GO:GO:2000744 GO:GO:0072077 Uniprot:P53411
Length = 406
Score = 213 (80.0 bits), Expect = 6.9e-17, P = 6.9e-17
Identities = 35/77 (45%), Positives = 50/77 (64%)
Query: 76 CFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPG 135
CF R+GK YCK D+ R FGTKC C D V RA++K++H+ CF C++C KQL G
Sbjct: 42 CFSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTG 101
Query: 136 DEFALREDGLF-CKDDH 151
+E + ++ F CK+D+
Sbjct: 102 EELYIIDENKFVCKEDY 118
Score = 135 (52.6 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
C GC I D+++L V D WH C++C EC L E C F R+GK YCK D+
Sbjct: 4 CAGCKRPILDRFLLNVL-DRAWHVKCVQCCECKCNLTEKC--FSREGKLYCKNDF 55
>UNIPROTKB|A7Z015 [details] [associations]
symbol:LHX1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008045 "motor neuron axon guidance" evidence=ISS]
[GO:0021702 "cerebellar Purkinje cell differentiation"
evidence=ISS] [GO:0009948 "anterior/posterior axis specification"
evidence=ISS] [GO:0001657 "ureteric bud development" evidence=ISS]
[GO:2000543 "positive regulation of gastrulation" evidence=ISS]
[GO:0040019 "positive regulation of embryonic development"
evidence=ISS] [GO:0003714 "transcription corepressor activity"
evidence=ISS] [GO:0060429 "epithelium development" evidence=ISS]
[GO:0035847 "uterine epithelium development" evidence=ISS]
[GO:0035846 "oviduct epithelium development" evidence=ISS]
[GO:0001706 "endoderm formation" evidence=ISS] [GO:0090009
"primitive streak formation" evidence=ISS] [GO:0001764 "neuron
migration" evidence=ISS] [GO:0021527 "spinal cord association
neuron differentiation" evidence=ISS] [GO:0043234 "protein complex"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0060322 "head development"
evidence=ISS] [GO:0048646 "anatomical structure formation involved
in morphogenesis" evidence=ISS] [GO:0010842 "retina layer
formation" evidence=ISS] [GO:0060059 "embryonic retina
morphogenesis in camera-type eye" evidence=ISS] [GO:0072077 "renal
vesicle morphogenesis" evidence=ISS] [GO:0072050 "S-shaped body
morphogenesis" evidence=ISS] [GO:0072049 "comma-shaped body
morphogenesis" evidence=ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0021937 "cerebellar
Purkinje cell-granule cell precursor cell signaling involved in
regulation of granule cell precursor cell proliferation"
evidence=ISS] [GO:0021871 "forebrain regionalization" evidence=ISS]
[GO:0021549 "cerebellum development" evidence=ISS] [GO:0010468
"regulation of gene expression" evidence=ISS] [GO:0009953
"dorsal/ventral pattern formation" evidence=ISS] [GO:0009952
"anterior/posterior pattern specification" evidence=ISS]
[GO:0009880 "embryonic pattern specification" evidence=ISS]
[GO:0009791 "post-embryonic development" evidence=ISS] [GO:0009653
"anatomical structure morphogenesis" evidence=ISS] [GO:0007389
"pattern specification process" evidence=ISS] [GO:0007267
"cell-cell signaling" evidence=ISS] [GO:2000768 "positive
regulation of nephron tubule epithelial cell differentiation"
evidence=ISS] [GO:0090190 "positive regulation of branching
involved in ureteric bud morphogenesis" evidence=ISS] [GO:0001071
"nucleic acid binding transcription factor activity" evidence=ISS]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0072178 "nephric duct morphogenesis"
evidence=ISS] [GO:0061205 "paramesonephric duct development"
evidence=ISS] [GO:2000744 "positive regulation of anterior head
development" evidence=ISS] [GO:0060068 "vagina development"
evidence=ISS] [GO:0060067 "cervix development" evidence=ISS]
[GO:0001822 "kidney development" evidence=ISS] [GO:0001705
"ectoderm formation" evidence=ISS] [GO:0001702 "gastrulation with
mouth forming second" evidence=ISS] [GO:0001655 "urogenital system
development" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0060066 "oviduct development" evidence=ISS] [GO:0060065 "uterus
development" evidence=ISS] [GO:0048703 "embryonic viscerocranium
morphogenesis" evidence=ISS] [GO:0072284 "metanephric S-shaped body
morphogenesis" evidence=IEA] [GO:0072283 "metanephric renal vesicle
morphogenesis" evidence=IEA] [GO:0048793 "pronephros development"
evidence=IEA] [GO:0035852 "horizontal cell localization"
evidence=IEA] [GO:0035849 "nephric duct elongation" evidence=IEA]
[GO:0032525 "somite rostral/caudal axis specification"
evidence=IEA] [GO:0021537 "telencephalon development" evidence=IEA]
[GO:0021517 "ventral spinal cord development" evidence=IEA]
[GO:0001823 "mesonephros development" evidence=IEA] [GO:0001658
"branching involved in ureteric bud morphogenesis" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0003714 GO:GO:0045892
GO:GO:0001764 GO:GO:0045893 GO:GO:0043234 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0006366
GO:GO:0009791 GO:GO:0090190 GO:GO:0010842 GO:GO:0009953
GO:GO:0040019 GO:GO:0009880 GO:GO:0001658 GO:GO:0001657
GO:GO:0021527 GO:GO:0021702 GO:GO:0060068 GO:GO:0021537
GO:GO:0001823 GO:GO:0090009 GO:GO:0060059 GO:GO:0048793
GO:GO:2000768 GO:GO:0048703 GO:GO:0060322 GO:GO:0001071
GO:GO:0021517 GO:GO:0001706 GO:GO:0032525 GO:GO:0001705
GO:GO:2000543 GO:GO:0072049 GO:GO:0072050
GeneTree:ENSGT00700000104177 CTD:3975 eggNOG:NOG257130
HOGENOM:HOG000231630 HOVERGEN:HBG006263 KO:K09372 OrthoDB:EOG405S1F
GO:GO:0021937 GO:GO:0021871 GO:GO:0072178 GO:GO:0061205
GO:GO:2000744 GO:GO:0072077 OMA:PSEMNEG GO:GO:0060067 GO:GO:0035852
GO:GO:0072283 GO:GO:0035849 GO:GO:0035846 GO:GO:0035847
EMBL:DAAA02048434 EMBL:BC153212 IPI:IPI00711186
RefSeq:NP_001098917.1 RefSeq:XP_003583582.1 UniGene:Bt.104440
Ensembl:ENSBTAT00000047689 GeneID:616699 GeneID:786041
KEGG:bta:616699 KEGG:bta:786041 InParanoid:A7Z015 NextBio:20927654
Uniprot:A7Z015
Length = 406
Score = 213 (80.0 bits), Expect = 6.9e-17, P = 6.9e-17
Identities = 35/77 (45%), Positives = 50/77 (64%)
Query: 76 CFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPG 135
CF R+GK YCK D+ R FGTKC C D V RA++K++H+ CF C++C KQL G
Sbjct: 42 CFSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTG 101
Query: 136 DEFALREDGLF-CKDDH 151
+E + ++ F CK+D+
Sbjct: 102 EELYIIDENKFVCKEDY 118
Score = 135 (52.6 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
C GC I D+++L V D WH C++C EC L E C F R+GK YCK D+
Sbjct: 4 CAGCKRPILDRFLLNVL-DRAWHVKCVQCCECKCNLTEKC--FSREGKLYCKNDF 55
>UNIPROTKB|E2RMA8 [details] [associations]
symbol:LHX1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0060429 "epithelium development"
evidence=ISS] [GO:0010842 "retina layer formation" evidence=ISS]
[GO:0021549 "cerebellum development" evidence=ISS] [GO:0009880
"embryonic pattern specification" evidence=ISS] [GO:0001655
"urogenital system development" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0060065 "uterus development" evidence=ISS]
[GO:0008045 "motor neuron axon guidance" evidence=ISS] [GO:2000543
"positive regulation of gastrulation" evidence=ISS] [GO:0040019
"positive regulation of embryonic development" evidence=ISS]
[GO:0003714 "transcription corepressor activity" evidence=ISS]
[GO:0035847 "uterine epithelium development" evidence=ISS]
[GO:0035846 "oviduct epithelium development" evidence=ISS]
[GO:0001706 "endoderm formation" evidence=ISS] [GO:0090009
"primitive streak formation" evidence=ISS] [GO:0001764 "neuron
migration" evidence=ISS] [GO:0021527 "spinal cord association
neuron differentiation" evidence=ISS] [GO:0043234 "protein complex"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0060322 "head development"
evidence=ISS] [GO:0048646 "anatomical structure formation involved
in morphogenesis" evidence=ISS] [GO:0060059 "embryonic retina
morphogenesis in camera-type eye" evidence=ISS] [GO:0072077 "renal
vesicle morphogenesis" evidence=ISS] [GO:0072050 "S-shaped body
morphogenesis" evidence=ISS] [GO:0072049 "comma-shaped body
morphogenesis" evidence=ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISS] [GO:2000768 "positive
regulation of nephron tubule epithelial cell differentiation"
evidence=ISS] [GO:0021937 "cerebellar Purkinje cell-granule cell
precursor cell signaling involved in regulation of granule cell
precursor cell proliferation" evidence=ISS] [GO:0021871 "forebrain
regionalization" evidence=ISS] [GO:0021702 "cerebellar Purkinje
cell differentiation" evidence=ISS] [GO:0010468 "regulation of gene
expression" evidence=ISS] [GO:0009953 "dorsal/ventral pattern
formation" evidence=ISS] [GO:0009952 "anterior/posterior pattern
specification" evidence=ISS] [GO:0009948 "anterior/posterior axis
specification" evidence=ISS] [GO:0009791 "post-embryonic
development" evidence=ISS] [GO:0009653 "anatomical structure
morphogenesis" evidence=ISS] [GO:0007389 "pattern specification
process" evidence=ISS] [GO:0007267 "cell-cell signaling"
evidence=ISS] [GO:0090190 "positive regulation of branching
involved in ureteric bud morphogenesis" evidence=ISS] [GO:0001071
"nucleic acid binding transcription factor activity" evidence=ISS]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0072178 "nephric duct morphogenesis"
evidence=ISS] [GO:0061205 "paramesonephric duct development"
evidence=ISS] [GO:2000744 "positive regulation of anterior head
development" evidence=ISS] [GO:0060068 "vagina development"
evidence=ISS] [GO:0060067 "cervix development" evidence=ISS]
[GO:0060066 "oviduct development" evidence=ISS] [GO:0001822 "kidney
development" evidence=ISS] [GO:0001705 "ectoderm formation"
evidence=ISS] [GO:0001702 "gastrulation with mouth forming second"
evidence=ISS] [GO:0001657 "ureteric bud development" evidence=ISS]
[GO:0048703 "embryonic viscerocranium morphogenesis" evidence=ISS]
[GO:0072284 "metanephric S-shaped body morphogenesis" evidence=IEA]
[GO:0072283 "metanephric renal vesicle morphogenesis" evidence=IEA]
[GO:0048793 "pronephros development" evidence=IEA] [GO:0035852
"horizontal cell localization" evidence=IEA] [GO:0035849 "nephric
duct elongation" evidence=IEA] [GO:0032525 "somite rostral/caudal
axis specification" evidence=IEA] [GO:0021537 "telencephalon
development" evidence=IEA] [GO:0021517 "ventral spinal cord
development" evidence=IEA] [GO:0001823 "mesonephros development"
evidence=IEA] [GO:0001658 "branching involved in ureteric bud
morphogenesis" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0003714 GO:GO:0045892 GO:GO:0001764 GO:GO:0045893
GO:GO:0043234 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GO:GO:0008045 GO:GO:0006366 GO:GO:0009791 GO:GO:0090190
GO:GO:0010842 GO:GO:0009953 GO:GO:0040019 GO:GO:0009880
GO:GO:0001658 GO:GO:0001657 GO:GO:0021527 GO:GO:0021702
GO:GO:0060068 GO:GO:0021537 GO:GO:0001823 GO:GO:0090009
GO:GO:0060059 GO:GO:0048793 GO:GO:2000768 GO:GO:0048703
GO:GO:0060322 GO:GO:0001071 GO:GO:0021517 GO:GO:0001706
GO:GO:0032525 GO:GO:0001705 GO:GO:2000543 GO:GO:0072049
GO:GO:0072050 GeneTree:ENSGT00700000104177 KO:K09372 GO:GO:0021937
GO:GO:0021871 GO:GO:0072178 GO:GO:0061205 GO:GO:2000744
GO:GO:0072077 OMA:PSEMNEG GO:GO:0060067 GO:GO:0035852 GO:GO:0072283
GO:GO:0035849 GO:GO:0035846 GO:GO:0035847 EMBL:AAEX03006612
RefSeq:XP_003639347.1 ProteinModelPortal:E2RMA8 SMR:E2RMA8
Ensembl:ENSCAFT00000028326 GeneID:100856649 KEGG:cfa:100856649
NextBio:20895890 Uniprot:E2RMA8
Length = 406
Score = 213 (80.0 bits), Expect = 6.9e-17, P = 6.9e-17
Identities = 35/77 (45%), Positives = 50/77 (64%)
Query: 76 CFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPG 135
CF R+GK YCK D+ R FGTKC C D V RA++K++H+ CF C++C KQL G
Sbjct: 42 CFSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTG 101
Query: 136 DEFALREDGLF-CKDDH 151
+E + ++ F CK+D+
Sbjct: 102 EELYIIDENKFVCKEDY 118
Score = 135 (52.6 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
C GC I D+++L V D WH C++C EC L E C F R+GK YCK D+
Sbjct: 4 CAGCKRPILDRFLLNVL-DRAWHVKCVQCCECKCNLTEKC--FSREGKLYCKNDF 55
>UNIPROTKB|P48742 [details] [associations]
symbol:LHX1 "LIM/homeobox protein Lhx1" species:9606 "Homo
sapiens" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0001658 "branching involved in ureteric bud
morphogenesis" evidence=IEA] [GO:0021517 "ventral spinal cord
development" evidence=IEA] [GO:0021537 "telencephalon development"
evidence=IEA] [GO:0032525 "somite rostral/caudal axis
specification" evidence=IEA] [GO:0035502 "metanephric part of
ureteric bud development" evidence=IEA] [GO:0035849 "nephric duct
elongation" evidence=IEA] [GO:0035852 "horizontal cell
localization" evidence=IEA] [GO:0044344 "cellular response to
fibroblast growth factor stimulus" evidence=IEA] [GO:0048793
"pronephros development" evidence=IEA] [GO:0072177 "mesonephric
duct development" evidence=IEA] [GO:0072224 "metanephric glomerulus
development" evidence=IEA] [GO:0072278 "metanephric comma-shaped
body morphogenesis" evidence=IEA] [GO:0072283 "metanephric renal
vesicle morphogenesis" evidence=IEA] [GO:0072284 "metanephric
S-shaped body morphogenesis" evidence=IEA] [GO:0048703 "embryonic
viscerocranium morphogenesis" evidence=ISS] [GO:0060065 "uterus
development" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0001655 "urogenital system development" evidence=ISS]
[GO:0001657 "ureteric bud development" evidence=ISS] [GO:0001705
"ectoderm formation" evidence=ISS] [GO:0060066 "oviduct
development" evidence=ISS] [GO:0060067 "cervix development"
evidence=ISS] [GO:0060068 "vagina development" evidence=ISS]
[GO:2000744 "positive regulation of anterior head development"
evidence=ISS] [GO:0061205 "paramesonephric duct development"
evidence=ISS] [GO:0072178 "nephric duct morphogenesis"
evidence=ISS] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0001071 "nucleic acid binding
transcription factor activity" evidence=ISS] [GO:0090190 "positive
regulation of branching involved in ureteric bud morphogenesis"
evidence=ISS] [GO:0001822 "kidney development" evidence=ISS]
[GO:0007267 "cell-cell signaling" evidence=ISS] [GO:0009653
"anatomical structure morphogenesis" evidence=ISS] [GO:0009791
"post-embryonic development" evidence=ISS] [GO:0009880 "embryonic
pattern specification" evidence=ISS] [GO:0009948
"anterior/posterior axis specification" evidence=ISS] [GO:0009953
"dorsal/ventral pattern formation" evidence=ISS] [GO:0010468
"regulation of gene expression" evidence=ISS] [GO:0021549
"cerebellum development" evidence=ISS] [GO:0021702 "cerebellar
Purkinje cell differentiation" evidence=ISS] [GO:0021937
"cerebellar Purkinje cell-granule cell precursor cell signaling
involved in regulation of granule cell precursor cell
proliferation" evidence=ISS] [GO:2000768 "positive regulation of
nephron tubule epithelial cell differentiation" evidence=ISS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0072049 "comma-shaped body morphogenesis"
evidence=ISS] [GO:0072050 "S-shaped body morphogenesis"
evidence=ISS] [GO:0072077 "renal vesicle morphogenesis"
evidence=ISS] [GO:0010842 "retina layer formation" evidence=ISS]
[GO:0048646 "anatomical structure formation involved in
morphogenesis" evidence=ISS] [GO:0060322 "head development"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0043234 "protein complex" evidence=ISS]
[GO:0021527 "spinal cord association neuron differentiation"
evidence=ISS] [GO:0001764 "neuron migration" evidence=ISS]
[GO:0090009 "primitive streak formation" evidence=ISS] [GO:0001706
"endoderm formation" evidence=ISS] [GO:0035846 "oviduct epithelium
development" evidence=ISS] [GO:0035847 "uterine epithelium
development" evidence=ISS] [GO:0060429 "epithelium development"
evidence=ISS] [GO:0008045 "motor neuron axon guidance"
evidence=ISS] [GO:0003714 "transcription corepressor activity"
evidence=ISS] [GO:0040019 "positive regulation of embryonic
development" evidence=ISS] [GO:2000543 "positive regulation of
gastrulation" evidence=ISS] [GO:0001702 "gastrulation with mouth
forming second" evidence=ISS] [GO:0007389 "pattern specification
process" evidence=ISS] [GO:0009952 "anterior/posterior pattern
specification" evidence=ISS] [GO:0021871 "forebrain
regionalization" evidence=ISS] [GO:0060059 "embryonic retina
morphogenesis in camera-type eye" evidence=ISS] [GO:0007399
"nervous system development" evidence=TAS] [GO:0009887 "organ
morphogenesis" evidence=TAS] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0003714 GO:GO:0045892 GO:GO:0001764 GO:GO:0045893
GO:GO:0043234 GO:GO:0044344 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0006366 GO:GO:0009791
GO:GO:0090190 GO:GO:0010842 GO:GO:0009953 GO:GO:0040019
GO:GO:0009880 GO:GO:0001658 GO:GO:0001657 GO:GO:0021527
GO:GO:0021702 GO:GO:0060068 GO:GO:0021537 GO:GO:0090009
GO:GO:0060059 GO:GO:0035502 GO:GO:0048793 GO:GO:2000768
GO:GO:0048703 GO:GO:0060322 GO:GO:0021517 GO:GO:0001706
GO:GO:0032525 GO:GO:0001705 GO:GO:2000543 GO:GO:0072049
GO:GO:0072050 GO:GO:0072224 CTD:3975 eggNOG:NOG257130
HOGENOM:HOG000231630 HOVERGEN:HBG006263 KO:K09372 OrthoDB:EOG405S1F
GO:GO:0021937 GO:GO:0021871 GO:GO:0072178 GO:GO:0061205
GO:GO:2000744 GO:GO:0072077 OMA:PSEMNEG EMBL:U14755 EMBL:AC023315
EMBL:AC025882 EMBL:BC111936 EMBL:BC101674 IPI:IPI00550117
PIR:G01507 RefSeq:NP_005559.2 UniGene:Hs.443727
ProteinModelPortal:P48742 SMR:P48742 STRING:P48742
PhosphoSite:P48742 DMDM:60416412 PaxDb:P48742 PRIDE:P48742
DNASU:3975 Ensembl:ENST00000254457 GeneID:3975 KEGG:hsa:3975
UCSC:uc002hnh.2 GeneCards:GC17P035294 HGNC:HGNC:6593 HPA:CAB002770
MIM:601999 neXtProt:NX_P48742 PharmGKB:PA30364 InParanoid:P48742
PhylomeDB:P48742 GenomeRNAi:3975 NextBio:15580 ArrayExpress:P48742
Bgee:P48742 CleanEx:HS_LHX1 Genevestigator:P48742
GermOnline:ENSG00000132130 GO:GO:0060067 GO:GO:0035852
GO:GO:0072177 GO:GO:0072278 GO:GO:0072283 GO:GO:0072284
GO:GO:0035849 GO:GO:0035846 GO:GO:0035847 Uniprot:P48742
Length = 406
Score = 213 (80.0 bits), Expect = 6.9e-17, P = 6.9e-17
Identities = 35/77 (45%), Positives = 50/77 (64%)
Query: 76 CFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPG 135
CF R+GK YCK D+ R FGTKC C D V RA++K++H+ CF C++C KQL G
Sbjct: 42 CFSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTG 101
Query: 136 DEFALREDGLF-CKDDH 151
+E + ++ F CK+D+
Sbjct: 102 EELYIIDENKFVCKEDY 118
Score = 135 (52.6 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
C GC I D+++L V D WH C++C EC L E C F R+GK YCK D+
Sbjct: 4 CAGCKRPILDRFLLNVL-DRAWHVKCVQCCECKCNLTEKC--FSREGKLYCKNDF 55
>UNIPROTKB|F2Z531 [details] [associations]
symbol:LHX1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:2000768 "positive
regulation of nephron tubule epithelial cell differentiation"
evidence=IEA] [GO:2000744 "positive regulation of anterior head
development" evidence=IEA] [GO:2000543 "positive regulation of
gastrulation" evidence=IEA] [GO:0090190 "positive regulation of
branching involved in ureteric bud morphogenesis" evidence=IEA]
[GO:0090009 "primitive streak formation" evidence=IEA] [GO:0072284
"metanephric S-shaped body morphogenesis" evidence=IEA] [GO:0072283
"metanephric renal vesicle morphogenesis" evidence=IEA] [GO:0072049
"comma-shaped body morphogenesis" evidence=IEA] [GO:0061205
"paramesonephric duct development" evidence=IEA] [GO:0060322 "head
development" evidence=IEA] [GO:0060068 "vagina development"
evidence=IEA] [GO:0060067 "cervix development" evidence=IEA]
[GO:0060059 "embryonic retina morphogenesis in camera-type eye"
evidence=IEA] [GO:0048793 "pronephros development" evidence=IEA]
[GO:0048703 "embryonic viscerocranium morphogenesis" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043234 "protein complex"
evidence=IEA] [GO:0040019 "positive regulation of embryonic
development" evidence=IEA] [GO:0035852 "horizontal cell
localization" evidence=IEA] [GO:0035849 "nephric duct elongation"
evidence=IEA] [GO:0035847 "uterine epithelium development"
evidence=IEA] [GO:0035846 "oviduct epithelium development"
evidence=IEA] [GO:0032525 "somite rostral/caudal axis
specification" evidence=IEA] [GO:0021937 "cerebellar Purkinje
cell-granule cell precursor cell signaling involved in regulation
of granule cell precursor cell proliferation" evidence=IEA]
[GO:0021871 "forebrain regionalization" evidence=IEA] [GO:0021702
"cerebellar Purkinje cell differentiation" evidence=IEA]
[GO:0021537 "telencephalon development" evidence=IEA] [GO:0021527
"spinal cord association neuron differentiation" evidence=IEA]
[GO:0021517 "ventral spinal cord development" evidence=IEA]
[GO:0009953 "dorsal/ventral pattern formation" evidence=IEA]
[GO:0009791 "post-embryonic development" evidence=IEA] [GO:0008045
"motor neuron axon guidance" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0001823 "mesonephros development" evidence=IEA] [GO:0001764
"neuron migration" evidence=IEA] [GO:0001706 "endoderm formation"
evidence=IEA] [GO:0001705 "ectoderm formation" evidence=IEA]
[GO:0001658 "branching involved in ureteric bud morphogenesis"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0045892 GO:GO:0001764 GO:GO:0045893 GO:GO:0043234
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0008045
GO:GO:0006366 GO:GO:0009791 GO:GO:0090190 GO:GO:0009953
GO:GO:0040019 GO:GO:0001658 GO:GO:0021527 GO:GO:0021702
GO:GO:0060068 GO:GO:0021537 GO:GO:0001823 GO:GO:0090009
GO:GO:0060059 GO:GO:0048793 GO:GO:2000768 GO:GO:0048703
GO:GO:0060322 GO:GO:0021517 GO:GO:0001706 GO:GO:0032525
GO:GO:0001705 GO:GO:2000543 GO:GO:0072049 GO:GO:0072050
GeneTree:ENSGT00700000104177 KO:K09372 GO:GO:0021937 GO:GO:0021871
GO:GO:0061205 GO:GO:2000744 OMA:PSEMNEG GO:GO:0060067 GO:GO:0035852
GO:GO:0072283 GO:GO:0035849 GO:GO:0035846 GO:GO:0035847
EMBL:CU929499 RefSeq:XP_003131754.1 UniGene:Ssc.22980
ProteinModelPortal:F2Z531 SMR:F2Z531 Ensembl:ENSSSCT00000019256
GeneID:100513681 KEGG:ssc:100513681 Uniprot:F2Z531
Length = 406
Score = 213 (80.0 bits), Expect = 6.9e-17, P = 6.9e-17
Identities = 35/77 (45%), Positives = 50/77 (64%)
Query: 76 CFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPG 135
CF R+GK YCK D+ R FGTKC C D V RA++K++H+ CF C++C KQL G
Sbjct: 42 CFSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTG 101
Query: 136 DEFALREDGLF-CKDDH 151
+E + ++ F CK+D+
Sbjct: 102 EELYIIDENKFVCKEDY 118
Score = 135 (52.6 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
C GC I D+++L V D WH C++C EC L E C F R+GK YCK D+
Sbjct: 4 CAGCKRPILDRFLLNVL-DRAWHVKCVQCCECKCNLTEKC--FSREGKLYCKNDF 55
>UNIPROTKB|P63008 [details] [associations]
symbol:Lhx1 "LIM/homeobox protein Lhx1" species:10036
"Mesocricetus auratus" [GO:0001071 "nucleic acid binding
transcription factor activity" evidence=ISS] [GO:0001655
"urogenital system development" evidence=ISS] [GO:0001657 "ureteric
bud development" evidence=ISS] [GO:0001702 "gastrulation with mouth
forming second" evidence=ISS] [GO:0001705 "ectoderm formation"
evidence=ISS] [GO:0001706 "endoderm formation" evidence=ISS]
[GO:0001764 "neuron migration" evidence=ISS] [GO:0001822 "kidney
development" evidence=ISS] [GO:0003714 "transcription corepressor
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0007267 "cell-cell signaling" evidence=ISS]
[GO:0007389 "pattern specification process" evidence=ISS]
[GO:0008045 "motor neuron axon guidance" evidence=ISS] [GO:0009653
"anatomical structure morphogenesis" evidence=ISS] [GO:0009791
"post-embryonic development" evidence=ISS] [GO:0009880 "embryonic
pattern specification" evidence=ISS] [GO:0009948
"anterior/posterior axis specification" evidence=ISS] [GO:0009952
"anterior/posterior pattern specification" evidence=ISS]
[GO:0009953 "dorsal/ventral pattern formation" evidence=ISS]
[GO:0010468 "regulation of gene expression" evidence=ISS]
[GO:0010842 "retina layer formation" evidence=ISS] [GO:0021527
"spinal cord association neuron differentiation" evidence=ISS]
[GO:0021549 "cerebellum development" evidence=ISS] [GO:0021702
"cerebellar Purkinje cell differentiation" evidence=ISS]
[GO:0021871 "forebrain regionalization" evidence=ISS] [GO:0021937
"cerebellar Purkinje cell-granule cell precursor cell signaling
involved in regulation of granule cell precursor cell
proliferation" evidence=ISS] [GO:0035846 "oviduct epithelium
development" evidence=ISS] [GO:0035847 "uterine epithelium
development" evidence=ISS] [GO:0040019 "positive regulation of
embryonic development" evidence=ISS] [GO:0043234 "protein complex"
evidence=ISS] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0048646 "anatomical
structure formation involved in morphogenesis" evidence=ISS]
[GO:0048703 "embryonic viscerocranium morphogenesis" evidence=ISS]
[GO:0060059 "embryonic retina morphogenesis in camera-type eye"
evidence=ISS] [GO:0060065 "uterus development" evidence=ISS]
[GO:0060066 "oviduct development" evidence=ISS] [GO:0060067 "cervix
development" evidence=ISS] [GO:0060068 "vagina development"
evidence=ISS] [GO:0060322 "head development" evidence=ISS]
[GO:0060429 "epithelium development" evidence=ISS] [GO:0061205
"paramesonephric duct development" evidence=ISS] [GO:0072049
"comma-shaped body morphogenesis" evidence=ISS] [GO:0072050
"S-shaped body morphogenesis" evidence=ISS] [GO:0072077 "renal
vesicle morphogenesis" evidence=ISS] [GO:0072178 "nephric duct
morphogenesis" evidence=ISS] [GO:0090009 "primitive streak
formation" evidence=ISS] [GO:0090190 "positive regulation of
branching involved in ureteric bud morphogenesis" evidence=ISS]
[GO:2000543 "positive regulation of gastrulation" evidence=ISS]
[GO:2000744 "positive regulation of anterior head development"
evidence=ISS] [GO:2000768 "positive regulation of nephron tubule
epithelial cell differentiation" evidence=ISS] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0003714 GO:GO:0045892 GO:GO:0001764
GO:GO:0045893 GO:GO:0043234 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0006366 GO:GO:0009791
GO:GO:0090190 GO:GO:0010842 GO:GO:0009953 GO:GO:0040019
GO:GO:0009880 GO:GO:0001657 GO:GO:0021527 GO:GO:0021702
GO:GO:0060068 GO:GO:0090009 GO:GO:0060059 GO:GO:2000768
GO:GO:0048703 GO:GO:0060322 GO:GO:0001071 GO:GO:0001706
GO:GO:0001705 GO:GO:2000543 GO:GO:0072049 GO:GO:0072050
HOVERGEN:HBG006263 GO:GO:0021937 GO:GO:0021871 GO:GO:0072178
GO:GO:0061205 GO:GO:2000744 GO:GO:0072077 GO:GO:0060067
GO:GO:0035846 GO:GO:0035847 EMBL:X81407 PIR:I48186
ProteinModelPortal:P63008 SMR:P63008 Uniprot:P63008
Length = 406
Score = 213 (80.0 bits), Expect = 6.9e-17, P = 6.9e-17
Identities = 35/77 (45%), Positives = 50/77 (64%)
Query: 76 CFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPG 135
CF R+GK YCK D+ R FGTKC C D V RA++K++H+ CF C++C KQL G
Sbjct: 42 CFSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTG 101
Query: 136 DEFALREDGLF-CKDDH 151
+E + ++ F CK+D+
Sbjct: 102 EELYIIDENKFVCKEDY 118
Score = 135 (52.6 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
C GC I D+++L V D WH C++C EC L E C F R+GK YCK D+
Sbjct: 4 CAGCKRPILDRFLLNVL-DRAWHVKCVQCCECKCNLTEKC--FSREGKLYCKNDF 55
>UNIPROTKB|Q5IS44 [details] [associations]
symbol:LHX1 "LIM/homeobox protein Lhx1" species:9598 "Pan
troglodytes" [GO:0001071 "nucleic acid binding transcription factor
activity" evidence=ISS] [GO:0001655 "urogenital system development"
evidence=ISS] [GO:0001657 "ureteric bud development" evidence=ISS]
[GO:0001702 "gastrulation with mouth forming second" evidence=ISS]
[GO:0001705 "ectoderm formation" evidence=ISS] [GO:0001706
"endoderm formation" evidence=ISS] [GO:0001764 "neuron migration"
evidence=ISS] [GO:0001822 "kidney development" evidence=ISS]
[GO:0003714 "transcription corepressor activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=ISS] [GO:0007267 "cell-cell
signaling" evidence=ISS] [GO:0007389 "pattern specification
process" evidence=ISS] [GO:0008045 "motor neuron axon guidance"
evidence=ISS] [GO:0009653 "anatomical structure morphogenesis"
evidence=ISS] [GO:0009791 "post-embryonic development"
evidence=ISS] [GO:0009880 "embryonic pattern specification"
evidence=ISS] [GO:0009948 "anterior/posterior axis specification"
evidence=ISS] [GO:0009952 "anterior/posterior pattern
specification" evidence=ISS] [GO:0009953 "dorsal/ventral pattern
formation" evidence=ISS] [GO:0010468 "regulation of gene
expression" evidence=ISS] [GO:0010842 "retina layer formation"
evidence=ISS] [GO:0021527 "spinal cord association neuron
differentiation" evidence=ISS] [GO:0021549 "cerebellum development"
evidence=ISS] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=ISS] [GO:0021871 "forebrain
regionalization" evidence=ISS] [GO:0021937 "cerebellar Purkinje
cell-granule cell precursor cell signaling involved in regulation
of granule cell precursor cell proliferation" evidence=ISS]
[GO:0035846 "oviduct epithelium development" evidence=ISS]
[GO:0035847 "uterine epithelium development" evidence=ISS]
[GO:0040019 "positive regulation of embryonic development"
evidence=ISS] [GO:0043234 "protein complex" evidence=ISS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0048646 "anatomical structure
formation involved in morphogenesis" evidence=ISS] [GO:0048703
"embryonic viscerocranium morphogenesis" evidence=ISS] [GO:0060059
"embryonic retina morphogenesis in camera-type eye" evidence=ISS]
[GO:0060065 "uterus development" evidence=ISS] [GO:0060066 "oviduct
development" evidence=ISS] [GO:0060067 "cervix development"
evidence=ISS] [GO:0060068 "vagina development" evidence=ISS]
[GO:0060322 "head development" evidence=ISS] [GO:0060429
"epithelium development" evidence=ISS] [GO:0061205 "paramesonephric
duct development" evidence=ISS] [GO:0072049 "comma-shaped body
morphogenesis" evidence=ISS] [GO:0072050 "S-shaped body
morphogenesis" evidence=ISS] [GO:0072077 "renal vesicle
morphogenesis" evidence=ISS] [GO:0072178 "nephric duct
morphogenesis" evidence=ISS] [GO:0090009 "primitive streak
formation" evidence=ISS] [GO:0090190 "positive regulation of
branching involved in ureteric bud morphogenesis" evidence=ISS]
[GO:2000543 "positive regulation of gastrulation" evidence=ISS]
[GO:2000744 "positive regulation of anterior head development"
evidence=ISS] [GO:2000768 "positive regulation of nephron tubule
epithelial cell differentiation" evidence=ISS] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0003714 GO:GO:0045892 GO:GO:0001764
GO:GO:0045893 GO:GO:0043234 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0006366 GO:GO:0009791
GO:GO:0090190 GO:GO:0010842 GO:GO:0009953 GO:GO:0040019
GO:GO:0009880 GO:GO:0001657 GO:GO:0021527 GO:GO:0021702
GO:GO:0060068 GO:GO:0090009 GO:GO:0060059 GO:GO:2000768
GO:GO:0048703 GO:GO:0060322 GO:GO:0001071 GO:GO:0001706
GO:GO:0001705 GO:GO:2000543 GO:GO:0072049 GO:GO:0072050 CTD:3975
eggNOG:NOG257130 HOGENOM:HOG000231630 HOVERGEN:HBG006263 KO:K09372
OrthoDB:EOG405S1F GO:GO:0021937 GO:GO:0021871 GO:GO:0072178
GO:GO:0061205 GO:GO:2000744 GO:GO:0072077 GO:GO:0060067
GO:GO:0035846 GO:GO:0035847 EMBL:AY665284 RefSeq:NP_001029088.1
UniGene:Ptr.6553 ProteinModelPortal:Q5IS44 SMR:Q5IS44 GeneID:454600
KEGG:ptr:454600 InParanoid:Q5IS44 NextBio:20836212 Uniprot:Q5IS44
Length = 406
Score = 213 (80.0 bits), Expect = 6.9e-17, P = 6.9e-17
Identities = 35/77 (45%), Positives = 50/77 (64%)
Query: 76 CFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPG 135
CF R+GK YCK D+ R FGTKC C D V RA++K++H+ CF C++C KQL G
Sbjct: 42 CFSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTG 101
Query: 136 DEFALREDGLF-CKDDH 151
+E + ++ F CK+D+
Sbjct: 102 EELYIIDENKFVCKEDY 118
Score = 135 (52.6 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
C GC I D+++L V D WH C++C EC L E C F R+GK YCK D+
Sbjct: 4 CAGCKRPILDRFLLNVL-DRAWHVKCVQCCECKCNLTEKC--FSREGKLYCKNDF 55
>UNIPROTKB|Q5IS89 [details] [associations]
symbol:LHX1 "LIM/homeobox protein Lhx1" species:39432
"Saimiri boliviensis boliviensis" [GO:0001071 "nucleic acid binding
transcription factor activity" evidence=ISS] [GO:0001655
"urogenital system development" evidence=ISS] [GO:0001657 "ureteric
bud development" evidence=ISS] [GO:0001702 "gastrulation with mouth
forming second" evidence=ISS] [GO:0001705 "ectoderm formation"
evidence=ISS] [GO:0001706 "endoderm formation" evidence=ISS]
[GO:0001764 "neuron migration" evidence=ISS] [GO:0001822 "kidney
development" evidence=ISS] [GO:0003714 "transcription corepressor
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0007267 "cell-cell signaling" evidence=ISS]
[GO:0007389 "pattern specification process" evidence=ISS]
[GO:0008045 "motor neuron axon guidance" evidence=ISS] [GO:0009653
"anatomical structure morphogenesis" evidence=ISS] [GO:0009791
"post-embryonic development" evidence=ISS] [GO:0009880 "embryonic
pattern specification" evidence=ISS] [GO:0009948
"anterior/posterior axis specification" evidence=ISS] [GO:0009952
"anterior/posterior pattern specification" evidence=ISS]
[GO:0009953 "dorsal/ventral pattern formation" evidence=ISS]
[GO:0010468 "regulation of gene expression" evidence=ISS]
[GO:0010842 "retina layer formation" evidence=ISS] [GO:0021527
"spinal cord association neuron differentiation" evidence=ISS]
[GO:0021549 "cerebellum development" evidence=ISS] [GO:0021702
"cerebellar Purkinje cell differentiation" evidence=ISS]
[GO:0021871 "forebrain regionalization" evidence=ISS] [GO:0021937
"cerebellar Purkinje cell-granule cell precursor cell signaling
involved in regulation of granule cell precursor cell
proliferation" evidence=ISS] [GO:0035846 "oviduct epithelium
development" evidence=ISS] [GO:0035847 "uterine epithelium
development" evidence=ISS] [GO:0040019 "positive regulation of
embryonic development" evidence=ISS] [GO:0043234 "protein complex"
evidence=ISS] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0048646 "anatomical
structure formation involved in morphogenesis" evidence=ISS]
[GO:0048703 "embryonic viscerocranium morphogenesis" evidence=ISS]
[GO:0060059 "embryonic retina morphogenesis in camera-type eye"
evidence=ISS] [GO:0060065 "uterus development" evidence=ISS]
[GO:0060066 "oviduct development" evidence=ISS] [GO:0060067 "cervix
development" evidence=ISS] [GO:0060068 "vagina development"
evidence=ISS] [GO:0060322 "head development" evidence=ISS]
[GO:0060429 "epithelium development" evidence=ISS] [GO:0061205
"paramesonephric duct development" evidence=ISS] [GO:0072049
"comma-shaped body morphogenesis" evidence=ISS] [GO:0072050
"S-shaped body morphogenesis" evidence=ISS] [GO:0072077 "renal
vesicle morphogenesis" evidence=ISS] [GO:0072178 "nephric duct
morphogenesis" evidence=ISS] [GO:0090009 "primitive streak
formation" evidence=ISS] [GO:0090190 "positive regulation of
branching involved in ureteric bud morphogenesis" evidence=ISS]
[GO:2000543 "positive regulation of gastrulation" evidence=ISS]
[GO:2000744 "positive regulation of anterior head development"
evidence=ISS] [GO:2000768 "positive regulation of nephron tubule
epithelial cell differentiation" evidence=ISS] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0003714 GO:GO:0045892 GO:GO:0001764
GO:GO:0045893 GO:GO:0043234 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0006366 GO:GO:0009791
GO:GO:0090190 GO:GO:0010842 GO:GO:0009953 GO:GO:0040019
GO:GO:0009880 GO:GO:0001657 GO:GO:0021527 GO:GO:0021702
GO:GO:0060068 GO:GO:0090009 GO:GO:0060059 GO:GO:2000768
GO:GO:0048703 GO:GO:0060322 GO:GO:0001071 GO:GO:0001706
GO:GO:0001705 GO:GO:2000543 GO:GO:0072049 GO:GO:0072050 CTD:3975
HOVERGEN:HBG006263 GO:GO:0021937 GO:GO:0021871 GO:GO:0072178
GO:GO:0061205 GO:GO:2000744 GO:GO:0072077 GO:GO:0060067
GO:GO:0035846 GO:GO:0035847 EMBL:AY665239 RefSeq:XP_003929119.1
ProteinModelPortal:Q5IS89 SMR:Q5IS89 GeneID:101033157
Uniprot:Q5IS89
Length = 406
Score = 213 (80.0 bits), Expect = 6.9e-17, P = 6.9e-17
Identities = 35/77 (45%), Positives = 50/77 (64%)
Query: 76 CFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPG 135
CF R+GK YCK D+ R FGTKC C D V RA++K++H+ CF C++C KQL G
Sbjct: 42 CFSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTG 101
Query: 136 DEFALREDGLF-CKDDH 151
+E + ++ F CK+D+
Sbjct: 102 EELYIIDENKFVCKEDY 118
Score = 135 (52.6 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
C GC I D+++L V D WH C++C EC L E C F R+GK YCK D+
Sbjct: 4 CAGCKRPILDRFLLNVL-DRAWHVKCVQCCECKCNLTEKC--FSREGKLYCKNDF 55
>MGI|MGI:99783 [details] [associations]
symbol:Lhx1 "LIM homeobox protein 1" species:10090 "Mus
musculus" [GO:0001071 "nucleic acid binding transcription factor
activity" evidence=IGI;IMP] [GO:0001655 "urogenital system
development" evidence=IMP] [GO:0001657 "ureteric bud development"
evidence=IMP] [GO:0001702 "gastrulation with mouth forming second"
evidence=IMP] [GO:0001705 "ectoderm formation" evidence=IGI]
[GO:0001706 "endoderm formation" evidence=IMP] [GO:0001764 "neuron
migration" evidence=IMP] [GO:0001822 "kidney development"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005622 "intracellular" evidence=IDA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0007267 "cell-cell
signaling" evidence=IGI] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007389 "pattern specification
process" evidence=IGI;IMP] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0008045 "motor neuron axon guidance"
evidence=IMP] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009653 "anatomical structure morphogenesis" evidence=IMP]
[GO:0009791 "post-embryonic development" evidence=IMP] [GO:0009880
"embryonic pattern specification" evidence=IGI] [GO:0009948
"anterior/posterior axis specification" evidence=IGI] [GO:0009952
"anterior/posterior pattern specification" evidence=IGI]
[GO:0009953 "dorsal/ventral pattern formation" evidence=IGI]
[GO:0010468 "regulation of gene expression" evidence=IMP]
[GO:0010842 "retina layer formation" evidence=IMP] [GO:0021527
"spinal cord association neuron differentiation" evidence=IGI]
[GO:0021549 "cerebellum development" evidence=IGI] [GO:0021702
"cerebellar Purkinje cell differentiation" evidence=IGI]
[GO:0021871 "forebrain regionalization" evidence=IGI] [GO:0021937
"cerebellar Purkinje cell-granule cell precursor cell signaling
involved in regulation of granule cell precursor cell
proliferation" evidence=IGI] [GO:0030154 "cell differentiation"
evidence=IEA] [GO:0032525 "somite rostral/caudal axis
specification" evidence=IMP] [GO:0035846 "oviduct epithelium
development" evidence=IMP] [GO:0035847 "uterine epithelium
development" evidence=IMP] [GO:0035849 "nephric duct elongation"
evidence=IMP] [GO:0035852 "horizontal cell localization"
evidence=IMP] [GO:0040019 "positive regulation of embryonic
development" evidence=IMP] [GO:0043234 "protein complex"
evidence=IDA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IGI;IMP] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0048646 "anatomical structure
formation involved in morphogenesis" evidence=IGI;IMP] [GO:0048703
"embryonic viscerocranium morphogenesis" evidence=IMP] [GO:0060059
"embryonic retina morphogenesis in camera-type eye" evidence=IMP]
[GO:0060065 "uterus development" evidence=IMP] [GO:0060066 "oviduct
development" evidence=IMP] [GO:0060067 "cervix development"
evidence=IMP] [GO:0060068 "vagina development" evidence=IMP]
[GO:0060322 "head development" evidence=IGI] [GO:0060429
"epithelium development" evidence=IMP] [GO:0061205 "paramesonephric
duct development" evidence=IMP] [GO:0072001 "renal system
development" evidence=IGI] [GO:0072049 "comma-shaped body
morphogenesis" evidence=IMP] [GO:0072050 "S-shaped body
morphogenesis" evidence=IMP] [GO:0072077 "renal vesicle
morphogenesis" evidence=IMP] [GO:0072178 "nephric duct
morphogenesis" evidence=IMP] [GO:0090009 "primitive streak
formation" evidence=IMP] [GO:0090190 "positive regulation of
branching involved in ureteric bud morphogenesis" evidence=IMP]
[GO:2000543 "positive regulation of gastrulation" evidence=IMP]
[GO:2000744 "positive regulation of anterior head development"
evidence=IMP] [GO:2000768 "positive regulation of nephron tubule
epithelial cell differentiation" evidence=IMP] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
MGI:MGI:99783 GO:GO:0005634 GO:GO:0003714 GO:GO:0045892
GO:GO:0001764 GO:GO:0045893 GO:GO:0043234 GO:GO:0044344
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0008045
GO:GO:0006366 GO:GO:0009791 GO:GO:0090190 GO:GO:0009953
GO:GO:0040019 GO:GO:0001658 GO:GO:0021527 GO:GO:0021702
GO:GO:0060068 GO:GO:0021537 GO:GO:0001823 GO:GO:0090009
GO:GO:0060059 GO:GO:0035502 GO:GO:0048793 GO:GO:2000768
GO:GO:0048703 GO:GO:0060322 GO:GO:0001071 GO:GO:0021517
GO:GO:0001706 GO:GO:0032525 GO:GO:0001705 GO:GO:2000543
GO:GO:0072049 GO:GO:0072224 CTD:3975 eggNOG:NOG257130
HOGENOM:HOG000231630 HOVERGEN:HBG006263 KO:K09372 OrthoDB:EOG405S1F
GO:GO:0021937 GO:GO:0021871 GO:GO:0061205 GO:GO:2000744 OMA:PSEMNEG
GO:GO:0060067 GO:GO:0035852 GO:GO:0072177 GO:GO:0072278
GO:GO:0072283 GO:GO:0072284 GO:GO:0035849 GO:GO:0035846
GO:GO:0035847 EMBL:Z27410 EMBL:S68107 EMBL:AF039706 EMBL:AF039705
IPI:IPI00119516 PIR:I48637 RefSeq:NP_032524.1 UniGene:Mm.4965
ProteinModelPortal:P63006 SMR:P63006 STRING:P63006 PRIDE:P63006
Ensembl:ENSMUST00000018842 GeneID:16869 KEGG:mmu:16869
InParanoid:P63006 NextBio:290830 Bgee:P63006 CleanEx:MM_LHX1
Genevestigator:P63006 GermOnline:ENSMUSG00000018698 Uniprot:P63006
Length = 406
Score = 213 (80.0 bits), Expect = 6.9e-17, P = 6.9e-17
Identities = 35/77 (45%), Positives = 50/77 (64%)
Query: 76 CFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPG 135
CF R+GK YCK D+ R FGTKC C D V RA++K++H+ CF C++C KQL G
Sbjct: 42 CFSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTG 101
Query: 136 DEFALREDGLF-CKDDH 151
+E + ++ F CK+D+
Sbjct: 102 EELYIIDENKFVCKEDY 118
Score = 135 (52.6 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
C GC I D+++L V D WH C++C EC L E C F R+GK YCK D+
Sbjct: 4 CAGCKRPILDRFLLNVL-DRAWHVKCVQCCECKCNLTEKC--FSREGKLYCKNDF 55
>RGD|71074 [details] [associations]
symbol:Lhx1 "LIM homeobox 1" species:10116 "Rattus norvegicus"
[GO:0001071 "nucleic acid binding transcription factor activity"
evidence=ISO;ISS] [GO:0001655 "urogenital system development"
evidence=ISO;ISS] [GO:0001657 "ureteric bud development"
evidence=ISO;ISS] [GO:0001658 "branching involved in ureteric bud
morphogenesis" evidence=IEA] [GO:0001702 "gastrulation with mouth
forming second" evidence=ISO;ISS] [GO:0001705 "ectoderm formation"
evidence=ISO;ISS] [GO:0001706 "endoderm formation" evidence=ISO;ISS]
[GO:0001764 "neuron migration" evidence=ISO;ISS] [GO:0001822 "kidney
development" evidence=ISO;ISS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0005622
"intracellular" evidence=ISO;ISS] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO;ISS] [GO:0007267 "cell-cell signaling"
evidence=ISO;ISS] [GO:0007389 "pattern specification process"
evidence=ISO;ISS] [GO:0008045 "motor neuron axon guidance"
evidence=ISO;ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009653 "anatomical structure morphogenesis" evidence=ISO;ISS]
[GO:0009791 "post-embryonic development" evidence=ISO;ISS]
[GO:0009880 "embryonic pattern specification" evidence=ISO;ISS]
[GO:0009948 "anterior/posterior axis specification"
evidence=ISO;ISS] [GO:0009952 "anterior/posterior pattern
specification" evidence=ISO;ISS] [GO:0009953 "dorsal/ventral pattern
formation" evidence=ISO;ISS] [GO:0010468 "regulation of gene
expression" evidence=ISO;ISS] [GO:0010842 "retina layer formation"
evidence=ISO;ISS] [GO:0021517 "ventral spinal cord development"
evidence=IEA] [GO:0021527 "spinal cord association neuron
differentiation" evidence=ISO;ISS] [GO:0021537 "telencephalon
development" evidence=IEA] [GO:0021549 "cerebellum development"
evidence=ISO;ISS] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=ISO;ISS] [GO:0021871 "forebrain
regionalization" evidence=ISO;ISS] [GO:0021937 "cerebellar Purkinje
cell-granule cell precursor cell signaling involved in regulation of
granule cell precursor cell proliferation" evidence=ISO;ISS]
[GO:0032525 "somite rostral/caudal axis specification"
evidence=IEA;ISO] [GO:0035502 "metanephric part of ureteric bud
development" evidence=IEP] [GO:0035846 "oviduct epithelium
development" evidence=ISO;ISS] [GO:0035847 "uterine epithelium
development" evidence=ISO;ISS] [GO:0035849 "nephric duct elongation"
evidence=IEA;ISO] [GO:0035852 "horizontal cell localization"
evidence=IEA;ISO] [GO:0040019 "positive regulation of embryonic
development" evidence=ISO;ISS] [GO:0043234 "protein complex"
evidence=ISO;ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0044344 "cellular response to fibroblast growth
factor stimulus" evidence=IEP] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO;ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent"
evidence=ISO;ISS] [GO:0048646 "anatomical structure formation
involved in morphogenesis" evidence=ISO;ISS] [GO:0048703 "embryonic
viscerocranium morphogenesis" evidence=ISO;ISS] [GO:0048793
"pronephros development" evidence=IEA] [GO:0060059 "embryonic retina
morphogenesis in camera-type eye" evidence=ISO;ISS] [GO:0060065
"uterus development" evidence=ISO;ISS] [GO:0060066 "oviduct
development" evidence=ISO;ISS] [GO:0060067 "cervix development"
evidence=ISO;ISS] [GO:0060068 "vagina development" evidence=ISO;ISS]
[GO:0060322 "head development" evidence=ISO;ISS] [GO:0060429
"epithelium development" evidence=ISO;ISS] [GO:0061205
"paramesonephric duct development" evidence=ISO;ISS] [GO:0072001
"renal system development" evidence=ISO] [GO:0072049 "comma-shaped
body morphogenesis" evidence=ISO;ISS] [GO:0072050 "S-shaped body
morphogenesis" evidence=ISO;ISS] [GO:0072077 "renal vesicle
morphogenesis" evidence=ISO;ISS] [GO:0072164 "mesonephric tubule
development" evidence=IEP] [GO:0072177 "mesonephric duct
development" evidence=IEP] [GO:0072178 "nephric duct morphogenesis"
evidence=ISO;ISS] [GO:0072224 "metanephric glomerulus development"
evidence=IEP] [GO:0072278 "metanephric comma-shaped body
morphogenesis" evidence=IEP] [GO:0072283 "metanephric renal vesicle
morphogenesis" evidence=IEA] [GO:0072284 "metanephric S-shaped body
morphogenesis" evidence=IEP] [GO:0090009 "primitive streak
formation" evidence=ISO;ISS] [GO:0090190 "positive regulation of
branching involved in ureteric bud morphogenesis" evidence=ISO;ISS]
[GO:2000543 "positive regulation of gastrulation" evidence=ISO;ISS]
[GO:2000744 "positive regulation of anterior head development"
evidence=ISO;ISS] [GO:2000768 "positive regulation of nephron tubule
epithelial cell differentiation" evidence=ISO;ISS] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
RGD:71074 GO:GO:0005634 GO:GO:0045892 GO:GO:0001764 GO:GO:0045893
GO:GO:0043234 GO:GO:0044344 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0006366 GO:GO:0009791
GO:GO:0090190 GO:GO:0010842 GO:GO:0009953 GO:GO:0040019
GO:GO:0009880 GO:GO:0001658 GO:GO:0021527 GO:GO:0021702
GO:GO:0060068 GO:GO:0021537 GO:GO:0090009 GO:GO:0060059
GO:GO:0035502 GO:GO:0048793 GO:GO:2000768 GO:GO:0048703
GO:GO:0060322 GO:GO:0001071 GO:GO:0021517 GO:GO:0001706
GO:GO:0032525 GO:GO:0001705 GO:GO:2000543
GeneTree:ENSGT00700000104177 GO:GO:0072224 CTD:3975 eggNOG:NOG257130
HOGENOM:HOG000231630 HOVERGEN:HBG006263 KO:K09372 OrthoDB:EOG405S1F
GO:GO:0021937 GO:GO:0021871 GO:GO:0072178 GO:GO:0061205
GO:GO:2000744 GO:GO:0072077 OMA:PSEMNEG GO:GO:0060067 GO:GO:0035852
GO:GO:0072177 GO:GO:0072278 GO:GO:0072283 GO:GO:0072284
GO:GO:0035849 GO:GO:0035846 GO:GO:0035847 EMBL:S71523
IPI:IPI00199573 RefSeq:NP_665887.3 UniGene:Rn.127825
ProteinModelPortal:P63007 SMR:P63007 STRING:P63007
PhosphoSite:P63007 PRIDE:P63007 Ensembl:ENSRNOT00000003799
GeneID:257634 KEGG:rno:257634 InParanoid:P63007 NextBio:624166
Genevestigator:P63007 GermOnline:ENSRNOG00000002812 Uniprot:P63007
Length = 406
Score = 213 (80.0 bits), Expect = 6.9e-17, P = 6.9e-17
Identities = 35/77 (45%), Positives = 50/77 (64%)
Query: 76 CFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPG 135
CF R+GK YCK D+ R FGTKC C D V RA++K++H+ CF C++C KQL G
Sbjct: 42 CFSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTG 101
Query: 136 DEFALREDGLF-CKDDH 151
+E + ++ F CK+D+
Sbjct: 102 EELYIIDENKFVCKEDY 118
Score = 135 (52.6 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
C GC I D+++L V D WH C++C EC L E C F R+GK YCK D+
Sbjct: 4 CAGCKRPILDRFLLNVL-DRAWHVKCVQCCECKCNLTEKC--FSREGKLYCKNDF 55
>UNIPROTKB|E2QZZ9 [details] [associations]
symbol:LHX3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
Pfam:PF00046 PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071
SMART:SM00132 SMART:SM00389 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GeneTree:ENSGT00700000104177
EMBL:AAEX03006759 EMBL:AAEX03006760 EMBL:AAEX03006761
Ensembl:ENSCAFT00000031319 Uniprot:E2QZZ9
Length = 397
Score = 212 (79.7 bits), Expect = 8.3e-17, P = 8.3e-17
Identities = 39/78 (50%), Positives = 47/78 (60%)
Query: 76 CFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPG 135
CF R YCK D+ + FGTKC C L V RA++ +YH+ CF CVVC +QL G
Sbjct: 74 CFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATG 133
Query: 136 DEFALREDG-LFCKDDHE 152
DEF L ED L CK D+E
Sbjct: 134 DEFYLMEDSRLVCKADYE 151
Score = 146 (56.5 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 27/61 (44%), Positives = 36/61 (59%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
+R + LC GC I D++IL+ A D WH+ CL+C +CH L E C F R YCK D
Sbjct: 30 RREIPLCAGCDQHILDRFILK-ALDRHWHSKCLKCTDCHTPLAERC--FSRGESVYCKDD 86
Query: 61 Y 61
+
Sbjct: 87 F 87
>UNIPROTKB|Q9UBR4 [details] [associations]
symbol:LHX3 "LIM/homeobox protein Lhx3" species:9606 "Homo
sapiens" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0000988 "protein binding transcription factor
activity" evidence=IEA] [GO:0001890 "placenta development"
evidence=IEA] [GO:0005667 "transcription factor complex"
evidence=IEA] [GO:0008045 "motor neuron axon guidance"
evidence=IEA] [GO:0021520 "spinal cord motor neuron cell fate
specification" evidence=IEA] [GO:0021521 "ventral spinal cord
interneuron specification" evidence=IEA] [GO:0021526 "medial motor
column neuron differentiation" evidence=IEA] [GO:0021527 "spinal
cord association neuron differentiation" evidence=IEA] [GO:0021983
"pituitary gland development" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048839 "inner ear development"
evidence=IEP] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0005634 "nucleus" evidence=TAS]
[GO:0009887 "organ morphogenesis" evidence=TAS] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0045893 GO:GO:0043066 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 EMBL:CH471090 GO:GO:0045944
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0005667 GO:GO:0009887 Gene3D:2.10.110.10 GO:GO:0008045
GO:GO:0021983 GO:GO:0048839 GO:GO:0021527 EMBL:AL138781
GO:GO:0000988 GO:GO:0021521 Orphanet:226307 eggNOG:NOG275246
HOGENOM:HOG000231629 KO:K09374 GO:GO:0021520 HOVERGEN:HBG006263
CTD:8022 OMA:PLCAGCN EMBL:AF156888 EMBL:AF156889 EMBL:AH008761
EMBL:AF096169 EMBL:AF214637 EMBL:AF367089 EMBL:AF367085
EMBL:AF367086 EMBL:AF367087 EMBL:AF367088 IPI:IPI00002747
IPI:IPI00220680 RefSeq:NP_055379.1 RefSeq:NP_835258.1
UniGene:Hs.148427 ProteinModelPortal:Q9UBR4 SMR:Q9UBR4
STRING:Q9UBR4 PhosphoSite:Q9UBR4 DMDM:12643415 PRIDE:Q9UBR4
DNASU:8022 Ensembl:ENST00000371746 Ensembl:ENST00000371748
GeneID:8022 KEGG:hsa:8022 UCSC:uc004cha.3 GeneCards:GC09M139088
HGNC:HGNC:6595 MIM:221750 MIM:600577 neXtProt:NX_Q9UBR4
Orphanet:231720 PharmGKB:PA30366 OrthoDB:EOG4SBDZ0 ChiTaRS:LHX3
GenomeRNAi:8022 NextBio:30588 ArrayExpress:Q9UBR4 Bgee:Q9UBR4
CleanEx:HS_LHX3 Genevestigator:Q9UBR4 GermOnline:ENSG00000107187
GO:GO:0021526 Uniprot:Q9UBR4
Length = 397
Score = 212 (79.7 bits), Expect = 8.3e-17, P = 8.3e-17
Identities = 39/78 (50%), Positives = 47/78 (60%)
Query: 76 CFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPG 135
CF R YCK D+ + FGTKC C L V RA++ +YH+ CF CVVC +QL G
Sbjct: 69 CFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATG 128
Query: 136 DEFALREDG-LFCKDDHE 152
DEF L ED L CK D+E
Sbjct: 129 DEFYLMEDSRLVCKADYE 146
Score = 145 (56.1 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 27/60 (45%), Positives = 36/60 (60%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
R + LC GC I D++IL+ A D WH+ CL+C++CH L E C F R YCK D+
Sbjct: 26 REIPLCAGCDQHILDRFILK-ALDRHWHSKCLKCSDCHTPLAERC--FSRGESVYCKDDF 82
>FB|FBgn0002023 [details] [associations]
symbol:Lim3 "Lim3" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=ISS;NAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS;NAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0007399 "nervous system
development" evidence=TAS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008045 "motor neuron axon guidance"
evidence=IMP] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0008045 HSSP:P50480 FlyBase:FBgn0002023
EMBL:BT003469 ProteinModelPortal:Q86P58 SMR:Q86P58 IntAct:Q86P58
STRING:Q86P58 PRIDE:Q86P58 InParanoid:Q86P58 ArrayExpress:Q86P58
Bgee:Q86P58 Uniprot:Q86P58
Length = 523
Score = 215 (80.7 bits), Expect = 8.4e-17, P = 8.4e-17
Identities = 44/123 (35%), Positives = 69/123 (56%)
Query: 34 RCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYV--- 90
+C CH+ + + V + +T+ + SE + L++ C F R+G+ +CK D+
Sbjct: 121 KCGGCHELILDRFILKVLE-RTWHAKCLQCSECHGQLNDKC--FARNGQLFCKEDFFKSN 177
Query: 91 RLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDG-LFCKD 149
R +GTKC C++ V RA++ +YH+QCF C +C + L GDEF L ED L CK
Sbjct: 178 RRYGTKCSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKR 237
Query: 150 DHE 152
D+E
Sbjct: 238 DYE 240
Score = 146 (56.5 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 26/60 (43%), Positives = 39/60 (65%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I D++IL+V + WHA CL+C+ECH L++ C F R+G+ +CK D+ S +
Sbjct: 122 CGGCHELILDRFILKVL-ERTWHAKCLQCSECHGQLNDKC--FARNGQLFCKEDFFKSNR 178
>MGI|MGI:102673 [details] [associations]
symbol:Lhx3 "LIM homeobox protein 3" species:10090 "Mus
musculus" [GO:0001076 "RNA polymerase II transcription factor
binding transcription factor activity" evidence=IPI] [GO:0001890
"placenta development" evidence=IGI] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005622 "intracellular" evidence=IDA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005667 "transcription
factor complex" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008045 "motor
neuron axon guidance" evidence=IGI] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009953 "dorsal/ventral pattern formation"
evidence=IMP] [GO:0021520 "spinal cord motor neuron cell fate
specification" evidence=IGI] [GO:0021521 "ventral spinal cord
interneuron specification" evidence=IDA] [GO:0021526 "medial motor
column neuron differentiation" evidence=IGI] [GO:0021527 "spinal
cord association neuron differentiation" evidence=IDA] [GO:0021983
"pituitary gland development" evidence=IMP] [GO:0030154 "cell
differentiation" evidence=IMP] [GO:0043066 "negative regulation of
apoptotic process" evidence=IMP] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IGI;IDA] [GO:0046872 "metal ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 MGI:MGI:102673 GO:GO:0043066 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0045944 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667
Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0001890 GO:GO:0021983
GO:GO:0048839 GO:GO:0021527 GO:GO:0000988 GO:GO:0021521
eggNOG:NOG275246 GeneTree:ENSGT00700000104177 HOGENOM:HOG000231629
KO:K09374 GO:GO:0021520 PDB:2RGT PDBsum:2RGT PDB:2JTN PDBsum:2JTN
HOVERGEN:HBG006263 CTD:8022 OMA:PLCAGCN OrthoDB:EOG4SBDZ0
GO:GO:0021526 EMBL:L33776 EMBL:L38857 EMBL:L38249 EMBL:L38248
IPI:IPI00118214 IPI:IPI00263557 PIR:I59360 RefSeq:NP_001034742.1
UniGene:Mm.386765 ProteinModelPortal:P50481 SMR:P50481
MINT:MINT-7009840 STRING:P50481 PhosphoSite:P50481 PRIDE:P50481
Ensembl:ENSMUST00000028302 Ensembl:ENSMUST00000054099 GeneID:16871
KEGG:mmu:16871 EvolutionaryTrace:P50481 NextBio:290838 Bgee:P50481
CleanEx:MM_LHX3 Genevestigator:P50481 GermOnline:ENSMUSG00000026934
Uniprot:P50481
Length = 400
Score = 212 (79.7 bits), Expect = 8.5e-17, P = 8.5e-17
Identities = 39/78 (50%), Positives = 47/78 (60%)
Query: 76 CFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPG 135
CF R YCK D+ + FGTKC C L V RA++ +YH+ CF CVVC +QL G
Sbjct: 72 CFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATG 131
Query: 136 DEFALREDG-LFCKDDHE 152
DEF L ED L CK D+E
Sbjct: 132 DEFYLMEDSRLVCKADYE 149
Score = 137 (53.3 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 25/58 (43%), Positives = 35/58 (60%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+ +C GC I D++IL+ A D WH+ CL+C++CH L E C F R YCK D+
Sbjct: 31 IPMCAGCDQHILDRFILK-ALDRHWHSKCLKCSDCHVPLAERC--FSRGESVYCKDDF 85
>UNIPROTKB|G3V8E3 [details] [associations]
symbol:Lhx3 "Protein Lhx3" species:10116 "Rattus
norvegicus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 RGD:71078 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 EMBL:CH474001 GeneTree:ENSGT00700000104177
KO:K09374 CTD:8022 RefSeq:XP_002726117.1 RefSeq:XP_002729190.1
UniGene:Rn.198623 PRIDE:G3V8E3 Ensembl:ENSRNOT00000025047
GeneID:170671 KEGG:rno:170671 NextBio:621169 Uniprot:G3V8E3
Length = 400
Score = 212 (79.7 bits), Expect = 8.5e-17, P = 8.5e-17
Identities = 39/78 (50%), Positives = 47/78 (60%)
Query: 76 CFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPG 135
CF R YCK D+ + FGTKC C L V RA++ +YH+ CF CVVC +QL G
Sbjct: 72 CFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATG 131
Query: 136 DEFALREDG-LFCKDDHE 152
DEF L ED L CK D+E
Sbjct: 132 DEFYLMEDSRLVCKADYE 149
Score = 137 (53.3 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 25/58 (43%), Positives = 35/58 (60%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+ +C GC I D++IL+ A D WH+ CL+C++CH L E C F R YCK D+
Sbjct: 31 IPMCAGCDQHILDRFILK-ALDRHWHSKCLKCSDCHVPLAERC--FSRGESVYCKDDF 85
>UNIPROTKB|G3V9E7 [details] [associations]
symbol:Lhx3 "RCG45383, isoform CRA_b" species:10116 "Rattus
norvegicus" [GO:0000988 "protein binding transcription factor
activity" evidence=IEA] [GO:0001890 "placenta development"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0008045 "motor
neuron axon guidance" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0021520 "spinal cord motor neuron cell fate
specification" evidence=IEA] [GO:0021521 "ventral spinal cord
interneuron specification" evidence=IEA] [GO:0021526 "medial motor
column neuron differentiation" evidence=IEA] [GO:0021527 "spinal
cord association neuron differentiation" evidence=IEA] [GO:0021983
"pituitary gland development" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0048839 "inner ear development" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 RGD:71078 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 EMBL:CH474001 GeneTree:ENSGT00700000104177
KO:K09374 CTD:8022 OMA:PLCAGCN UniGene:Rn.198623 GeneID:170671
KEGG:rno:170671 NextBio:621169 RefSeq:XP_001059910.2
RefSeq:XP_001078243.2 Ensembl:ENSRNOT00000045587 Uniprot:G3V9E7
Length = 402
Score = 212 (79.7 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 39/78 (50%), Positives = 47/78 (60%)
Query: 76 CFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPG 135
CF R YCK D+ + FGTKC C L V RA++ +YH+ CF CVVC +QL G
Sbjct: 74 CFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATG 133
Query: 136 DEFALREDG-LFCKDDHE 152
DEF L ED L CK D+E
Sbjct: 134 DEFYLMEDSRLVCKADYE 151
Score = 144 (55.7 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
+R + +C GC I D++IL+ A D WH+ CL+C++CH L E C F R YCK D
Sbjct: 30 RREIPMCAGCDQHILDRFILK-ALDRHWHSKCLKCSDCHVPLAERC--FSRGESVYCKDD 86
Query: 61 Y 61
+
Sbjct: 87 F 87
>UNIPROTKB|Q2TEA4 [details] [associations]
symbol:Lhx3 "LIM homeodomain 3 protein b isoform"
species:9913 "Bos taurus" [GO:0048839 "inner ear development"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0043066
"negative regulation of apoptotic process" evidence=IEA]
[GO:0021983 "pituitary gland development" evidence=IEA] [GO:0021527
"spinal cord association neuron differentiation" evidence=IEA]
[GO:0021526 "medial motor column neuron differentiation"
evidence=IEA] [GO:0021521 "ventral spinal cord interneuron
specification" evidence=IEA] [GO:0021520 "spinal cord motor neuron
cell fate specification" evidence=IEA] [GO:0008045 "motor neuron
axon guidance" evidence=IEA] [GO:0005667 "transcription factor
complex" evidence=IEA] [GO:0001890 "placenta development"
evidence=IEA] [GO:0000988 "protein binding transcription factor
activity" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0043066
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0045944
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667
Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0021983 GO:GO:0048839
GO:GO:0021527 GO:GO:0000988 GO:GO:0021521
GeneTree:ENSGT00700000104177 KO:K09374 GO:GO:0021520
HOVERGEN:HBG006263 CTD:8022 OMA:PLCAGCN GO:GO:0021526
EMBL:DAAA02032311 EMBL:AY923832 EMBL:AY923833 IPI:IPI00687531
IPI:IPI01028343 RefSeq:NP_001033709.1 UniGene:Bt.45155
Ensembl:ENSBTAT00000055580 GeneID:539213 KEGG:bta:539213
NextBio:20877851 Uniprot:Q2TEA4
Length = 403
Score = 212 (79.7 bits), Expect = 8.7e-17, P = 8.7e-17
Identities = 39/78 (50%), Positives = 47/78 (60%)
Query: 76 CFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPG 135
CF R YCK D+ + FGTKC C L V RA++ +YH+ CF CVVC +QL G
Sbjct: 74 CFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATG 133
Query: 136 DEFALREDG-LFCKDDHE 152
DEF L ED L CK D+E
Sbjct: 134 DEFYLMEDSRLVCKADYE 151
Score = 147 (56.8 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 27/61 (44%), Positives = 37/61 (60%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
+R + LC GC I D++IL+ A D WH+ CL+C++CH L E C F R YCK D
Sbjct: 30 RREIPLCAGCDQHILDRFILK-ALDRHWHSKCLKCSDCHAPLAERC--FSRGESVYCKDD 86
Query: 61 Y 61
+
Sbjct: 87 F 87
>UNIPROTKB|L7N0D8 [details] [associations]
symbol:LHX3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] GeneTree:ENSGT00700000104177
EMBL:AAEX03006759 Ensembl:ENSCAFT00000020228 Uniprot:L7N0D8
Length = 403
Score = 212 (79.7 bits), Expect = 8.7e-17, P = 8.7e-17
Identities = 39/78 (50%), Positives = 47/78 (60%)
Query: 76 CFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPG 135
CF R YCK D+ + FGTKC C L V RA++ +YH+ CF CVVC +QL G
Sbjct: 74 CFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATG 133
Query: 136 DEFALREDG-LFCKDDHE 152
DEF L ED L CK D+E
Sbjct: 134 DEFYLMEDSRLVCKADYE 151
Score = 146 (56.5 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 27/61 (44%), Positives = 36/61 (59%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
+R + LC GC I D++IL+ A D WH+ CL+C +CH L E C F R YCK D
Sbjct: 30 RREIPLCAGCDQHILDRFILK-ALDRHWHSKCLKCTDCHTPLAERC--FSRGESVYCKDD 86
Query: 61 Y 61
+
Sbjct: 87 F 87
>UNIPROTKB|B7ZP59 [details] [associations]
symbol:lhx1 "Homeobox protein" species:8355 "Xenopus
laevis" [GO:0001071 "nucleic acid binding transcription factor
activity" evidence=ISS] [GO:0001655 "urogenital system development"
evidence=ISS] [GO:0001657 "ureteric bud development" evidence=ISS]
[GO:0001702 "gastrulation with mouth forming second" evidence=ISS]
[GO:0001705 "ectoderm formation" evidence=ISS] [GO:0001706
"endoderm formation" evidence=ISS] [GO:0001764 "neuron migration"
evidence=ISS] [GO:0001822 "kidney development" evidence=ISS]
[GO:0003714 "transcription corepressor activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=ISS] [GO:0007267 "cell-cell
signaling" evidence=ISS] [GO:0007389 "pattern specification
process" evidence=ISS] [GO:0008045 "motor neuron axon guidance"
evidence=ISS] [GO:0009653 "anatomical structure morphogenesis"
evidence=ISS] [GO:0009791 "post-embryonic development"
evidence=ISS] [GO:0009880 "embryonic pattern specification"
evidence=ISS] [GO:0009948 "anterior/posterior axis specification"
evidence=ISS] [GO:0009952 "anterior/posterior pattern
specification" evidence=ISS] [GO:0009953 "dorsal/ventral pattern
formation" evidence=ISS] [GO:0010468 "regulation of gene
expression" evidence=ISS] [GO:0010842 "retina layer formation"
evidence=ISS] [GO:0021527 "spinal cord association neuron
differentiation" evidence=ISS] [GO:0021549 "cerebellum development"
evidence=ISS] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=ISS] [GO:0021871 "forebrain
regionalization" evidence=ISS] [GO:0021937 "cerebellar Purkinje
cell-granule cell precursor cell signaling involved in regulation
of granule cell precursor cell proliferation" evidence=ISS]
[GO:0040019 "positive regulation of embryonic development"
evidence=ISS] [GO:0043234 "protein complex" evidence=ISS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0048646 "anatomical structure
formation involved in morphogenesis" evidence=ISS] [GO:0048703
"embryonic viscerocranium morphogenesis" evidence=ISS] [GO:0060059
"embryonic retina morphogenesis in camera-type eye" evidence=ISS]
[GO:0060322 "head development" evidence=ISS] [GO:0060429
"epithelium development" evidence=ISS] [GO:0061205 "paramesonephric
duct development" evidence=ISS] [GO:0072049 "comma-shaped body
morphogenesis" evidence=ISS] [GO:0072050 "S-shaped body
morphogenesis" evidence=ISS] [GO:0072077 "renal vesicle
morphogenesis" evidence=ISS] [GO:0072178 "nephric duct
morphogenesis" evidence=ISS] [GO:0090009 "primitive streak
formation" evidence=ISS] [GO:0090190 "positive regulation of
branching involved in ureteric bud morphogenesis" evidence=ISS]
[GO:2000543 "positive regulation of gastrulation" evidence=ISS]
[GO:2000744 "positive regulation of anterior head development"
evidence=ISS] [GO:2000768 "positive regulation of nephron tubule
epithelial cell differentiation" evidence=ISS] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0003714 GO:GO:0045892 GO:GO:0001764
GO:GO:0045893 GO:GO:0043234 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0006366 GO:GO:0009791
GO:GO:0090190 GO:GO:0010842 GO:GO:0009953 GO:GO:0040019
GO:GO:0009880 GO:GO:0001657 GO:GO:0021527 GO:GO:0021702
GO:GO:0090009 GO:GO:0060059 GO:GO:2000768 GO:GO:0048703
GO:GO:0060322 GO:GO:0001071 GO:GO:0001706 GO:GO:0001705
GO:GO:2000543 GO:GO:0072049 GO:GO:0072050 CTD:3975
HOVERGEN:HBG006263 KO:K09372 GO:GO:0021937 GO:GO:0021871
GO:GO:0072178 GO:GO:0061205 GO:GO:2000744 GO:GO:0072077
RefSeq:NP_001084128.1 UniGene:Xl.32655 GeneID:399323
KEGG:xla:399323 Xenbase:XB-GENE-856460 EMBL:BC169338 EMBL:BC169340
SMR:B7ZP59 Uniprot:B7ZP59
Length = 403
Score = 212 (79.7 bits), Expect = 8.7e-17, P = 8.7e-17
Identities = 35/77 (45%), Positives = 50/77 (64%)
Query: 76 CFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPG 135
CF R+GK YCK D+ R FGTKC C D V RA++K++H+ CF C++C KQL G
Sbjct: 42 CFSREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTG 101
Query: 136 DEFALREDGLF-CKDDH 151
+E + ++ F CK+D+
Sbjct: 102 EELYIIDENKFVCKEDY 118
Score = 135 (52.6 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
C GC I D+++L V D WH C++C EC L E C F R+GK YCK D+
Sbjct: 4 CAGCERPILDRFLLNVL-DRAWHVKCVQCCECKCNLTEKC--FSREGKLYCKNDF 55
>UNIPROTKB|P29674 [details] [associations]
symbol:lhx1 "LIM/homeobox protein Lhx1" species:8355
"Xenopus laevis" [GO:0003002 "regionalization" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005667 "transcription factor complex"
evidence=IDA] [GO:0007517 "muscle organ development" evidence=IMP]
[GO:0009798 "axis specification" evidence=IMP] [GO:0009952
"anterior/posterior pattern specification" evidence=IMP]
[GO:0022008 "neurogenesis" evidence=IMP] [GO:0030903 "notochord
development" evidence=IMP] [GO:0035565 "regulation of pronephros
size" evidence=IGI] [GO:0039003 "pronephric field specification"
evidence=IGI] [GO:0039020 "pronephric nephron tubule development"
evidence=IGI] [GO:0042074 "cell migration involved in gastrulation"
evidence=IMP] [GO:0043009 "chordate embryonic development"
evidence=IMP] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IGI;IDA]
[GO:0048793 "pronephros development" evidence=IGI;IMP] [GO:0072080
"nephron tubule development" evidence=IGI] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0022008 GO:GO:0009952 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0045944 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667 Gene3D:2.10.110.10
GO:GO:0007517 GO:GO:0042074 GO:GO:0009798 GO:GO:0043009
GO:GO:0030903 GO:GO:0039020 GO:GO:0035565 CTD:3975
HOVERGEN:HBG006263 KO:K09372 EMBL:X63889 EMBL:AF013242 PIR:S23802
RefSeq:NP_001084128.1 UniGene:Xl.32655 ProteinModelPortal:P29674
SMR:P29674 GeneID:399323 KEGG:xla:399323 Xenbase:XB-GENE-856460
GO:GO:0039003 Uniprot:P29674
Length = 403
Score = 212 (79.7 bits), Expect = 8.7e-17, P = 8.7e-17
Identities = 35/77 (45%), Positives = 50/77 (64%)
Query: 76 CFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPG 135
CF R+GK YCK D+ R FGTKC C D V RA++K++H+ CF C++C KQL G
Sbjct: 42 CFSREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTG 101
Query: 136 DEFALREDGLF-CKDDH 151
+E + ++ F CK+D+
Sbjct: 102 EELYIIDENKFVCKEDY 118
Score = 135 (52.6 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
C GC I D+++L V D WH C++C EC L E C F R+GK YCK D+
Sbjct: 4 CAGCERPILDRFLLNVL-DRAWHVKCVQCCECKCNLTEKC--FSREGKLYCKNDF 55
>UNIPROTKB|Q58CW3 [details] [associations]
symbol:LHX9 "LIM homeobox 9" species:9913 "Bos taurus"
[GO:0005634 "nucleus" evidence=IEA] [GO:0035262 "gonad
morphogenesis" evidence=IEA] [GO:0008585 "female gonad development"
evidence=IEA] [GO:0008584 "male gonad development" evidence=IEA]
[GO:0008283 "cell proliferation" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0008585 GO:GO:0046872 GO:GO:0008283
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0008584 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 KO:K09373 GO:GO:0035262
HOGENOM:HOG000034022 HOVERGEN:HBG006262 OrthoDB:EOG4G4GQK
IPI:IPI00692674 UniGene:Bt.31799 CTD:56956 EMBL:DAAA02043909
EMBL:DAAA02043910 EMBL:BT021834 IPI:IPI00903761
RefSeq:NP_001019715.1 SMR:Q58CW3 Ensembl:ENSBTAT00000017945
GeneID:515012 KEGG:bta:515012 InParanoid:Q58CW3 NextBio:20871620
Uniprot:Q58CW3
Length = 378
Score = 211 (79.3 bits), Expect = 8.8e-17, P = 8.8e-17
Identities = 33/84 (39%), Positives = 49/84 (58%)
Query: 70 LDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVC 128
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+ CF C C
Sbjct: 86 LESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTC 145
Query: 129 GKQLVPGDEFALREDGLFCKDDHE 152
K L GD F +++ ++C+ E
Sbjct: 146 NKTLTTGDHFGMKDSLVYCRAHFE 169
Score = 183 (69.5 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 30/57 (52%), Positives = 38/57 (66%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+LC GCGG+I D+Y L +A D +WH CL+C EC L+ TCF +DG YCK DY
Sbjct: 50 ALCAGCGGKIADRYYL-LAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDY 105
>UNIPROTKB|O97581 [details] [associations]
symbol:LHX3 "LIM/homeobox protein Lhx3" species:9823 "Sus
scrofa" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0008270 "zinc ion binding"
evidence=NAS] [GO:0003677 "DNA binding" evidence=IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0045893 GO:GO:0046872
GO:GO:0003677 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
HOVERGEN:HBG006263 EMBL:AF063245 UniGene:Ssc.26829
ProteinModelPortal:O97581 SMR:O97581 Uniprot:O97581
Length = 383
Score = 211 (79.3 bits), Expect = 9.3e-17, P = 9.3e-17
Identities = 39/78 (50%), Positives = 47/78 (60%)
Query: 76 CFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPG 135
CF R YCK D+ + FGTKC C L V RA++ +YH+ CF CVVC +QL G
Sbjct: 54 CFSRGESLYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATG 113
Query: 136 DEFALREDG-LFCKDDHE 152
DEF L ED L CK D+E
Sbjct: 114 DEFYLMEDSRLVCKADYE 131
Score = 141 (54.7 bits), Expect = 4.8e-09, P = 4.8e-09
Identities = 26/60 (43%), Positives = 36/60 (60%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+ + LC GC I D++IL+ A D WH+ CL+C++CH L E C F R YCK D+
Sbjct: 11 KEIPLCAGCDQHILDRFILK-ALDRHWHSKCLKCSDCHTPLAERC--FSRGESLYCKDDF 67
>UNIPROTKB|A0JNI8 [details] [associations]
symbol:LHX9 "LIM/homeobox protein Lhx9" species:9913 "Bos
taurus" [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0003714 "transcription corepressor
activity" evidence=ISS] [GO:0008045 "motor neuron axon guidance"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0035262
"gonad morphogenesis" evidence=IEA] [GO:0008585 "female gonad
development" evidence=IEA] [GO:0008584 "male gonad development"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0003714 GO:GO:0045892
GO:GO:0008585 GO:GO:0046872 GO:GO:0008283 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0008584 Gene3D:2.10.110.10 GO:GO:0008045 eggNOG:NOG240987
GeneTree:ENSGT00680000099670 GO:GO:0035262 HOGENOM:HOG000034022
HOVERGEN:HBG006262 EMBL:BT026326 EMBL:BC126704 IPI:IPI00692674
IPI:IPI00839239 UniGene:Bt.31799 ProteinModelPortal:A0JNI8
SMR:A0JNI8 Ensembl:ENSBTAT00000043591 Ensembl:ENSBTAT00000054943
InParanoid:Q0V893 OMA:AAMLFHG Uniprot:A0JNI8
Length = 397
Score = 211 (79.3 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 33/84 (39%), Positives = 49/84 (58%)
Query: 70 LDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVC 128
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+ CF C C
Sbjct: 105 LESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTC 164
Query: 129 GKQLVPGDEFALREDGLFCKDDHE 152
K L GD F +++ ++C+ E
Sbjct: 165 NKTLTTGDHFGMKDSLVYCRAHFE 188
Score = 183 (69.5 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 30/57 (52%), Positives = 38/57 (66%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+LC GCGG+I D+Y L +A D +WH CL+C EC L+ TCF +DG YCK DY
Sbjct: 69 ALCAGCGGKIADRYYL-LAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDY 124
>UNIPROTKB|F1S5F5 [details] [associations]
symbol:LHX9 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0035262 "gonad
morphogenesis" evidence=IEA] [GO:0008585 "female gonad development"
evidence=IEA] [GO:0008584 "male gonad development" evidence=IEA]
[GO:0008283 "cell proliferation" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0008585 GO:GO:0046872 GO:GO:0008283
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0008584 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 GO:GO:0035262 OMA:AAMLFHG
EMBL:FP325281 Ensembl:ENSSSCT00000011930 Uniprot:F1S5F5
Length = 397
Score = 211 (79.3 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 33/84 (39%), Positives = 49/84 (58%)
Query: 70 LDENCTCFVRDGKTYCKRDYVRLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVC 128
L+ TCF +DG YCK DY R F +C +C+L + VMRA++ +YH+ CF C C
Sbjct: 105 LESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTC 164
Query: 129 GKQLVPGDEFALREDGLFCKDDHE 152
K L GD F +++ ++C+ E
Sbjct: 165 NKTLTTGDHFGMKDSLVYCRAHFE 188
Score = 183 (69.5 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 30/57 (52%), Positives = 38/57 (66%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+LC GCGG+I D+Y L +A D +WH CL+C EC L+ TCF +DG YCK DY
Sbjct: 69 ALCAGCGGKIADRYYL-LAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDY 124
>UNIPROTKB|J9PBA6 [details] [associations]
symbol:LHX8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 EMBL:AAEX03004901 EMBL:AAEX03004902
Ensembl:ENSCAFT00000043981 Uniprot:J9PBA6
Length = 295
Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 33/85 (38%), Positives = 53/85 (62%)
Query: 70 LDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCG 129
L + +C+++D +CK DY R +GT+C +C + D+V RAK +YH+ CF C C
Sbjct: 48 LGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCK 107
Query: 130 KQLVPGDEFALREDGLFCKDDHEGM 154
+QL G+EFAL E+ + C+ ++ M
Sbjct: 108 RQLSTGEEFALVEEKVLCRVHYDCM 132
Score = 139 (54.0 bits), Expect = 4.4e-09, P = 4.4e-09
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+C CG +I D+Y+L+V DL WH CL C+ C L + +C+++D +CK DY
Sbjct: 13 VCNSCGREIVDKYLLKVN-DLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY 67
>UNIPROTKB|C8YLT4 [details] [associations]
symbol:Lhx8 "LIM homeobox 8" species:9823 "Sus scrofa"
[GO:0005634 "nucleus" evidence=IEA] [GO:0042475 "odontogenesis of
dentin-containing tooth" evidence=IEA] [GO:0021884 "forebrain
neuron development" evidence=IEA] [GO:0008585 "female gonad
development" evidence=IEA] [GO:0007611 "learning or memory"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0008585 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0007611
Gene3D:2.10.110.10 GO:GO:0042475 GO:GO:0021884 eggNOG:NOG264882
GeneTree:ENSGT00700000104050 KO:K09375 CTD:431707 OMA:MYWKSDQ
EMBL:CU929623 EMBL:FJ587986 RefSeq:NP_001159787.1 UniGene:Ssc.78542
Ensembl:ENSSSCT00000004181 GeneID:100310798 KEGG:ssc:100310798
Uniprot:C8YLT4
Length = 295
Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 33/85 (38%), Positives = 53/85 (62%)
Query: 70 LDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCG 129
L + +C+++D +CK DY R +GT+C +C + D+V RAK +YH+ CF C C
Sbjct: 48 LGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCK 107
Query: 130 KQLVPGDEFALREDGLFCKDDHEGM 154
+QL G+EFAL E+ + C+ ++ M
Sbjct: 108 RQLSTGEEFALVEEKVLCRVHYDCM 132
Score = 137 (53.3 bits), Expect = 7.3e-09, P = 7.3e-09
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+C CG +I D+Y+L+V DL WH CL C+ C L + +C+++D +CK DY
Sbjct: 13 VCNSCGLEIVDKYLLKVN-DLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY 67
>ZFIN|ZDB-GENE-051220-1 [details] [associations]
symbol:lhx2b "LIM homeobox 2b" species:7955 "Danio
rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0007420 "brain development"
evidence=IMP] [GO:0007411 "axon guidance" evidence=IMP] [GO:0043010
"camera-type eye development" evidence=IMP] [GO:0030900 "forebrain
development" evidence=IMP] [GO:0031290 "retinal ganglion cell axon
guidance" evidence=IMP] [GO:0021537 "telencephalon development"
evidence=IMP] [GO:0007634 "optokinetic behavior" evidence=IMP]
[GO:0021554 "optic nerve development" evidence=IMP] [GO:0009416
"response to light stimulus" evidence=IMP] [GO:0071632 "optomotor
response" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0010468 "regulation of gene expression"
evidence=IMP] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 ZFIN:ZDB-GENE-051220-1 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0043010 Gene3D:2.10.110.10 GO:GO:0010468
GeneTree:ENSGT00680000099670 KO:K09373 GO:GO:0021537 GO:GO:0031290
GO:GO:0007634 HOGENOM:HOG000034022 HOVERGEN:HBG006262 OMA:CNENDAE
EMBL:AL929566 EMBL:BX005074 IPI:IPI00505332 RefSeq:NP_001035099.3
UniGene:Dr.16318 SMR:B0R107 Ensembl:ENSDART00000148020
GeneID:791744 KEGG:dre:791744 CTD:791744 NextBio:20930769
Uniprot:B0R107
Length = 427
Score = 211 (79.3 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 39/115 (33%), Positives = 58/115 (50%)
Query: 35 CAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFG 94
CA C + + D K + R E L+ TCF +DG YCK DY R F
Sbjct: 84 CAGCGGKISDRYYLLAVD-KQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFS 142
Query: 95 T-KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCK 148
+C +C+L + VMRA++ +YH+ CF C C K L GD F +++ ++C+
Sbjct: 143 VQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCR 197
Score = 187 (70.9 bits), Expect = 5.8e-14, P = 5.8e-14
Identities = 31/59 (52%), Positives = 40/59 (67%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
R++LC GCGG+I D+Y L +A D +WH CL+C EC L+ TCF +DG YCK DY
Sbjct: 80 RVALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDY 137
>UNIPROTKB|E1BYB0 [details] [associations]
symbol:LMO4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008270 "zinc ion binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104177 EMBL:AADN02012827 EMBL:AADN02012828
IPI:IPI00819278 Ensembl:ENSGALT00000010105 ArrayExpress:E1BYB0
Uniprot:E1BYB0
Length = 165
Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 42/130 (32%), Positives = 61/130 (46%)
Query: 23 APDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGK 82
A L W RCA C + + + D + + S + Q D +C+ + G
Sbjct: 15 AGSLSWK----RCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGM 70
Query: 83 TYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFAL 140
C+ DY+RLFG C C + + VMRA+ +YH++CF C C +LVPGD F
Sbjct: 71 ILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHY 130
Query: 141 REDGLFCKDD 150
LFC+ D
Sbjct: 131 INGSLFCEHD 140
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECH-QFLDENCTCFVRDGKTYCKRDYV 62
C GCGG+I D+++L A D WH+ CL+C+ C Q D +C+ + G C+ DY+
Sbjct: 23 CAGCGGKIADRFLL-YAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYI 78
>UNIPROTKB|F1P113 [details] [associations]
symbol:LMO4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0001158
"enhancer sequence-specific DNA binding" evidence=IEA] [GO:0001843
"neural tube closure" evidence=IEA] [GO:0003281 "ventricular septum
development" evidence=IEA] [GO:0005667 "transcription factor
complex" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0008134 "transcription
factor binding" evidence=IEA] [GO:0021514 "ventral spinal cord
interneuron differentiation" evidence=IEA] [GO:0021522 "spinal cord
motor neuron differentiation" evidence=IEA] [GO:0021527 "spinal
cord association neuron differentiation" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0042659 "regulation of cell fate specification" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048538 "thymus
development" evidence=IEA] [GO:0050865 "regulation of cell
activation" evidence=IEA] Pfam:PF00412 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132 GO:GO:0046872
GO:GO:0031333 GO:GO:0008270 GO:GO:0045944 GO:GO:0005667
Gene3D:2.10.110.10 GO:GO:0006366 GO:GO:0001158 GO:GO:0042659
GeneTree:ENSGT00700000104177 OMA:ALSWKRC GO:GO:0050865
EMBL:AADN02012827 EMBL:AADN02012828 IPI:IPI00582860
Ensembl:ENSGALT00000033333 ArrayExpress:F1P113 Uniprot:F1P113
Length = 174
Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 42/130 (32%), Positives = 61/130 (46%)
Query: 23 APDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGK 82
A L W RCA C + + + D + + S + Q D +C+ + G
Sbjct: 24 AGSLSWK----RCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGM 79
Query: 83 TYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFAL 140
C+ DY+RLFG C C + + VMRA+ +YH++CF C C +LVPGD F
Sbjct: 80 ILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHY 139
Query: 141 REDGLFCKDD 150
LFC+ D
Sbjct: 140 INGSLFCEHD 149
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECH-QFLDENCTCFVRDGKTYCKRDYV 62
C GCGG+I D+++L A D WH+ CL+C+ C Q D +C+ + G C+ DY+
Sbjct: 32 CAGCGGKIADRFLL-YAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYI 87
>UNIPROTKB|Q3SWZ8 [details] [associations]
symbol:LMO4 "LIM domain transcription factor LMO4"
species:9913 "Bos taurus" [GO:0050865 "regulation of cell
activation" evidence=IEA] [GO:0048538 "thymus development"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0042659
"regulation of cell fate specification" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0021527 "spinal cord association neuron differentiation"
evidence=IEA] [GO:0021522 "spinal cord motor neuron
differentiation" evidence=IEA] [GO:0021514 "ventral spinal cord
interneuron differentiation" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=IEA]
[GO:0003281 "ventricular septum development" evidence=IEA]
[GO:0001843 "neural tube closure" evidence=IEA] [GO:0001158
"enhancer sequence-specific DNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132 GO:GO:0046872
GO:GO:0031333 GO:GO:0008270 GO:GO:0045944 GO:GO:0005667
Gene3D:2.10.110.10 GO:GO:0021522 GO:GO:0006366 GO:GO:0001843
GO:GO:0048538 GO:GO:0001158 GO:GO:0021527 GO:GO:0042659
GO:GO:0003281 GO:GO:0021514 GeneTree:ENSGT00700000104177
HOGENOM:HOG000232175 HOVERGEN:HBG054231 eggNOG:NOG314117
OrthoDB:EOG4XKV82 OMA:ALSWKRC EMBL:BC104582 IPI:IPI00705980
RefSeq:NP_001029923.1 UniGene:Bt.3730 ProteinModelPortal:Q3SWZ8
SMR:Q3SWZ8 PRIDE:Q3SWZ8 Ensembl:ENSBTAT00000000389 GeneID:614212
KEGG:bta:614212 CTD:8543 InParanoid:Q3SWZ8 NextBio:20898998
GO:GO:0050865 Uniprot:Q3SWZ8
Length = 165
Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 42/130 (32%), Positives = 61/130 (46%)
Query: 23 APDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGK 82
A L W RCA C + + + D + + S + Q D +C+ + G
Sbjct: 15 AGSLSWK----RCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGM 70
Query: 83 TYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFAL 140
C+ DY+RLFG C C + + VMRA+ +YH++CF C C +LVPGD F
Sbjct: 71 ILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHY 130
Query: 141 REDGLFCKDD 150
LFC+ D
Sbjct: 131 INGSLFCEHD 140
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECH-QFLDENCTCFVRDGKTYCKRDYV 62
C GCGG+I D+++L A D WH+ CL+C+ C Q D +C+ + G C+ DY+
Sbjct: 23 CAGCGGKIADRFLL-YAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYI 78
>UNIPROTKB|E2QSI3 [details] [associations]
symbol:LMO4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0050865 "regulation of cell activation"
evidence=IEA] [GO:0048538 "thymus development" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0042659 "regulation of
cell fate specification" evidence=IEA] [GO:0031333 "negative
regulation of protein complex assembly" evidence=IEA] [GO:0021527
"spinal cord association neuron differentiation" evidence=IEA]
[GO:0021522 "spinal cord motor neuron differentiation"
evidence=IEA] [GO:0021514 "ventral spinal cord interneuron
differentiation" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005667 "transcription
factor complex" evidence=IEA] [GO:0003281 "ventricular septum
development" evidence=IEA] [GO:0001843 "neural tube closure"
evidence=IEA] [GO:0001158 "enhancer sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023
SMART:SM00132 GO:GO:0046872 GO:GO:0031333 GO:GO:0008270
GO:GO:0045944 GO:GO:0005667 Gene3D:2.10.110.10 GO:GO:0021522
GO:GO:0006366 GO:GO:0001843 GO:GO:0048538 GO:GO:0001158
GO:GO:0021527 GO:GO:0042659 GO:GO:0003281 GO:GO:0021514
GeneTree:ENSGT00700000104177 OMA:ALSWKRC CTD:8543 GO:GO:0050865
EMBL:AAEX03004843 EMBL:AAEX03004844 RefSeq:XP_003434840.1
RefSeq:XP_537086.1 RefSeq:XP_867313.1 SMR:E2QSI3
Ensembl:ENSCAFT00000036423 GeneID:479962 KEGG:cfa:479962
NextBio:20855066 Uniprot:E2QSI3
Length = 165
Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 42/130 (32%), Positives = 61/130 (46%)
Query: 23 APDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGK 82
A L W RCA C + + + D + + S + Q D +C+ + G
Sbjct: 15 AGSLSWK----RCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGM 70
Query: 83 TYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFAL 140
C+ DY+RLFG C C + + VMRA+ +YH++CF C C +LVPGD F
Sbjct: 71 ILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHY 130
Query: 141 REDGLFCKDD 150
LFC+ D
Sbjct: 131 INGSLFCEHD 140
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECH-QFLDENCTCFVRDGKTYCKRDYV 62
C GCGG+I D+++L A D WH+ CL+C+ C Q D +C+ + G C+ DY+
Sbjct: 23 CAGCGGKIADRFLL-YAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYI 78
>UNIPROTKB|P61968 [details] [associations]
symbol:LMO4 "LIM domain transcription factor LMO4"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0001158 "enhancer sequence-specific DNA binding"
evidence=IEA] [GO:0003281 "ventricular septum development"
evidence=IEA] [GO:0021514 "ventral spinal cord interneuron
differentiation" evidence=IEA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA] [GO:0021527 "spinal cord
association neuron differentiation" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0042659 "regulation of cell fate specification" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048538 "thymus
development" evidence=IEA] [GO:0050865 "regulation of cell
activation" evidence=IEA] [GO:0005667 "transcription factor
complex" evidence=ISS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=TAS] [GO:0001843 "neural tube closure" evidence=ISS]
[GO:0008134 "transcription factor binding" evidence=ISS]
Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023
SMART:SM00132 GO:GO:0046872 GO:GO:0031333 GO:GO:0008270
GO:GO:0045944 Pathway_Interaction_DB:il6_7pathway GO:GO:0003700
EMBL:CH471097 GO:GO:0005667 Gene3D:2.10.110.10 GO:GO:0021522
GO:GO:0006366 GO:GO:0001843 GO:GO:0048538 GO:GO:0008134
GO:GO:0001158 GO:GO:0021527 GO:GO:0042659 GO:GO:0003281 PDB:2L4Z
PDBsum:2L4Z GO:GO:0021514 HOGENOM:HOG000232175 HOVERGEN:HBG054231
eggNOG:NOG314117 OrthoDB:EOG4XKV82 OMA:ALSWKRC CTD:8543
GO:GO:0050865 EMBL:U24576 EMBL:BC003600 EMBL:BC017673 EMBL:BC065818
IPI:IPI00297604 RefSeq:NP_006760.1 UniGene:Hs.436792
ProteinModelPortal:P61968 SMR:P61968 IntAct:P61968 MINT:MINT-265427
STRING:P61968 DMDM:48428992 PRIDE:P61968 Ensembl:ENST00000370542
Ensembl:ENST00000370544 GeneID:8543 KEGG:hsa:8543 UCSC:uc001dmi.3
GeneCards:GC01P087794 HGNC:HGNC:6644 HPA:CAB022345 MIM:603129
neXtProt:NX_P61968 PharmGKB:PA30410 InParanoid:P61968
PhylomeDB:P61968 ChiTaRS:LMO4 EvolutionaryTrace:P61968
GenomeRNAi:8543 NextBio:32002 Bgee:P61968 CleanEx:HS_LMO4
Genevestigator:P61968 GermOnline:ENSG00000143013 Uniprot:P61968
Length = 165
Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 42/130 (32%), Positives = 61/130 (46%)
Query: 23 APDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGK 82
A L W RCA C + + + D + + S + Q D +C+ + G
Sbjct: 15 AGSLSWK----RCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGM 70
Query: 83 TYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFAL 140
C+ DY+RLFG C C + + VMRA+ +YH++CF C C +LVPGD F
Sbjct: 71 ILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHY 130
Query: 141 REDGLFCKDD 150
LFC+ D
Sbjct: 131 INGSLFCEHD 140
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECH-QFLDENCTCFVRDGKTYCKRDYV 62
C GCGG+I D+++L A D WH+ CL+C+ C Q D +C+ + G C+ DY+
Sbjct: 23 CAGCGGKIADRFLL-YAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYI 78
>UNIPROTKB|A9ED91 [details] [associations]
symbol:LMO4 "LIM domain only 4" species:9823 "Sus scrofa"
[GO:0050865 "regulation of cell activation" evidence=IEA]
[GO:0048538 "thymus development" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0042659 "regulation of cell fate
specification" evidence=IEA] [GO:0031333 "negative regulation of
protein complex assembly" evidence=IEA] [GO:0021527 "spinal cord
association neuron differentiation" evidence=IEA] [GO:0021522
"spinal cord motor neuron differentiation" evidence=IEA]
[GO:0021514 "ventral spinal cord interneuron differentiation"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005667 "transcription factor complex"
evidence=IEA] [GO:0003281 "ventricular septum development"
evidence=IEA] [GO:0001843 "neural tube closure" evidence=IEA]
[GO:0001158 "enhancer sequence-specific DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
GO:GO:0046872 GO:GO:0031333 GO:GO:0008270 GO:GO:0045944
GO:GO:0005667 Gene3D:2.10.110.10 GO:GO:0021522 GO:GO:0006366
GO:GO:0001843 GO:GO:0048538 GO:GO:0001158 GO:GO:0021527
GO:GO:0042659 GO:GO:0003281 GO:GO:0021514
GeneTree:ENSGT00700000104177 HOGENOM:HOG000232175
HOVERGEN:HBG054231 eggNOG:NOG314117 OrthoDB:EOG4XKV82 OMA:ALSWKRC
CTD:8543 GO:GO:0050865 EMBL:CU550656 EMBL:AB304401
RefSeq:NP_001106156.1 UniGene:Ssc.9714 ProteinModelPortal:A9ED91
SMR:A9ED91 STRING:A9ED91 PRIDE:A9ED91 Ensembl:ENSSSCT00000007590
GeneID:100127155 KEGG:ssc:100127155 Uniprot:A9ED91
Length = 165
Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 42/130 (32%), Positives = 61/130 (46%)
Query: 23 APDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGK 82
A L W RCA C + + + D + + S + Q D +C+ + G
Sbjct: 15 AGSLSWK----RCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGM 70
Query: 83 TYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFAL 140
C+ DY+RLFG C C + + VMRA+ +YH++CF C C +LVPGD F
Sbjct: 71 ILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHY 130
Query: 141 REDGLFCKDD 150
LFC+ D
Sbjct: 131 INGSLFCEHD 140
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECH-QFLDENCTCFVRDGKTYCKRDYV 62
C GCGG+I D+++L A D WH+ CL+C+ C Q D +C+ + G C+ DY+
Sbjct: 23 CAGCGGKIADRFLL-YAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYI 78
>MGI|MGI:109360 [details] [associations]
symbol:Lmo4 "LIM domain only 4" species:10090 "Mus musculus"
[GO:0001158 "enhancer sequence-specific DNA binding" evidence=IDA]
[GO:0001843 "neural tube closure" evidence=IMP] [GO:0003281
"ventricular septum development" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005667 "transcription factor complex"
evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0008134 "transcription
factor binding" evidence=IDA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0021514 "ventral spinal cord interneuron
differentiation" evidence=IDA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IDA] [GO:0021527 "spinal cord
association neuron differentiation" evidence=IGI] [GO:0031333
"negative regulation of protein complex assembly" evidence=IDA]
[GO:0042659 "regulation of cell fate specification" evidence=IMP]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IGI] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0048538 "thymus development"
evidence=IGI] [GO:0050865 "regulation of cell activation"
evidence=IMP] Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478
PROSITE:PS50023 SMART:SM00132 MGI:MGI:109360 GO:GO:0046872
GO:GO:0031333 GO:GO:0008270 GO:GO:0045944 GO:GO:0005667
Gene3D:2.10.110.10 GO:GO:0021522 GO:GO:0006366 GO:GO:0001843
GO:GO:0048538 GO:GO:0008134 GO:GO:0001158 GO:GO:0021527
GO:GO:0042659 GO:GO:0003281 GO:GO:0021514 PDB:1M3V PDB:1RUT
PDBsum:1M3V PDBsum:1RUT HOGENOM:HOG000232175 HOVERGEN:HBG054231
eggNOG:NOG314117 OrthoDB:EOG4XKV82 OMA:ALSWKRC CTD:8543
GO:GO:0050865 ChiTaRS:LMO4 EMBL:AF074600 EMBL:AF102817
EMBL:AF096996 EMBL:BC003488 EMBL:BC004661 EMBL:BC010278
IPI:IPI00281974 RefSeq:NP_001155241.1 RefSeq:NP_001155242.1
RefSeq:NP_034853.1 UniGene:Mm.29187 PDB:2DFY PDBsum:2DFY
ProteinModelPortal:P61969 SMR:P61969 STRING:P61969 PRIDE:P61969
Ensembl:ENSMUST00000120539 Ensembl:ENSMUST00000121112
Ensembl:ENSMUST00000121796 GeneID:16911 KEGG:mmu:16911
InParanoid:P61969 EvolutionaryTrace:P61969 NextBio:290952
Bgee:P61969 CleanEx:MM_LMO4 Genevestigator:P61969 Uniprot:P61969
Length = 165
Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 42/130 (32%), Positives = 61/130 (46%)
Query: 23 APDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGK 82
A L W RCA C + + + D + + S + Q D +C+ + G
Sbjct: 15 AGSLSWK----RCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGM 70
Query: 83 TYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFAL 140
C+ DY+RLFG C C + + VMRA+ +YH++CF C C +LVPGD F
Sbjct: 71 ILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHY 130
Query: 141 REDGLFCKDD 150
LFC+ D
Sbjct: 131 INGSLFCEHD 140
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECH-QFLDENCTCFVRDGKTYCKRDYV 62
C GCGG+I D+++L A D WH+ CL+C+ C Q D +C+ + G C+ DY+
Sbjct: 23 CAGCGGKIADRFLL-YAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYI 78
>RGD|1305670 [details] [associations]
symbol:Lmo4 "LIM domain only 4" species:10116 "Rattus
norvegicus" [GO:0001158 "enhancer sequence-specific DNA binding"
evidence=IEA;ISO] [GO:0001843 "neural tube closure"
evidence=IEA;ISO] [GO:0003281 "ventricular septum development"
evidence=IEA;ISO] [GO:0005667 "transcription factor complex"
evidence=IEA;ISO] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA;ISO] [GO:0008134 "transcription factor
binding" evidence=IEA;ISO] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0021514 "ventral spinal cord interneuron
differentiation" evidence=IEA;ISO] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA;ISO] [GO:0021527 "spinal cord
association neuron differentiation" evidence=IEA;ISO] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA;ISO]
[GO:0042659 "regulation of cell fate specification"
evidence=IEA;ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0048538
"thymus development" evidence=IEA;ISO] [GO:0050865 "regulation of
cell activation" evidence=IEA;ISO] Pfam:PF00412 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132 RGD:1305670
GO:GO:0046872 GO:GO:0031333 GO:GO:0008270 GO:GO:0045944
GO:GO:0005667 Gene3D:2.10.110.10 GO:GO:0021522 GO:GO:0006366
GO:GO:0001843 GO:GO:0048538 GO:GO:0001158 GO:GO:0021527
GO:GO:0042659 EMBL:CH473952 GO:GO:0003281 GO:GO:0021514
GeneTree:ENSGT00700000104177 HOGENOM:HOG000232175
HOVERGEN:HBG054231 eggNOG:NOG314117 OrthoDB:EOG4XKV82 CTD:8543
GO:GO:0050865 EMBL:BC087700 IPI:IPI00202852 RefSeq:NP_001009708.1
UniGene:Rn.2517 SMR:Q5PPG8 STRING:Q5PPG8 Ensembl:ENSRNOT00000067502
GeneID:362051 KEGG:rno:362051 UCSC:RGD:1305670 InParanoid:Q5PPG8
NextBio:678516 Genevestigator:Q5PPG8 Uniprot:Q5PPG8
Length = 165
Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 42/130 (32%), Positives = 61/130 (46%)
Query: 23 APDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGK 82
A L W RCA C + + + D + + S + Q D +C+ + G
Sbjct: 15 AGSLSWK----RCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGM 70
Query: 83 TYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFAL 140
C+ DY+RLFG C C + + VMRA+ +YH++CF C C +LVPGD F
Sbjct: 71 ILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHY 130
Query: 141 REDGLFCKDD 150
LFC+ D
Sbjct: 131 INGSLFCEHD 140
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECH-QFLDENCTCFVRDGKTYCKRDYV 62
C GCGG+I D+++L A D WH+ CL+C+ C Q D +C+ + G C+ DY+
Sbjct: 23 CAGCGGKIADRFLL-YAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYI 78
>ZFIN|ZDB-GENE-041025-1 [details] [associations]
symbol:lhx6 "LIM homeobox 6" species:7955 "Danio
rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 ZFIN:ZDB-GENE-041025-1 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 eggNOG:NOG264882
GeneTree:ENSGT00700000104050 CTD:26468 HOGENOM:HOG000038965
HOVERGEN:HBG006261 KO:K09375 OMA:PATDQVM OrthoDB:EOG4GTKD8
EMBL:BX571668 EMBL:BC162225 EMBL:AY664403 IPI:IPI00495496
RefSeq:NP_001004015.1 UniGene:Dr.33994 STRING:Q6BDC4
Ensembl:ENSDART00000021100 GeneID:445565 KEGG:dre:445565
InParanoid:Q6BDC4 NextBio:20832189 Uniprot:Q6BDC4
Length = 375
Score = 193 (73.0 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 31/85 (36%), Positives = 51/85 (60%)
Query: 70 LDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCG 129
L ++ +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C C
Sbjct: 131 LRQHSSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCK 190
Query: 130 KQLVPGDEFALREDGLFCKDDHEGM 154
+QL G+EF L E+ + C+ ++ M
Sbjct: 191 RQLSTGEEFGLVEEKVLCRIHYDTM 215
Score = 140 (54.3 bits), Expect = 6.0e-09, P = 6.0e-09
Identities = 22/59 (37%), Positives = 39/59 (66%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
++C CG +I D+Y+L+V +L WH CL C+ C L ++ +C++++ + +CK DY S
Sbjct: 95 NVCASCGLEILDRYLLKVN-NLIWHVRCLECSVCRTSLRQHSSCYIKNKEIFCKMDYFS 152
Score = 34 (17.0 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 56 YCKRDYVS--SEKNQFLDE 72
Y K + ++ SE NQFL E
Sbjct: 2 YWKNEALAPLSEGNQFLSE 20
>UNIPROTKB|E9PGE3 [details] [associations]
symbol:LHX8 "LIM/homeobox protein Lhx8" species:9606 "Homo
sapiens" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0007611 "learning or memory" evidence=IEA]
[GO:0008585 "female gonad development" evidence=IEA] [GO:0021884
"forebrain neuron development" evidence=IEA] [GO:0042475
"odontogenesis of dentin-containing tooth" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0008585 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0007611
Gene3D:2.10.110.10 GO:GO:0042475 GO:GO:0021884 KO:K09375
EMBL:AC099786 RefSeq:NP_001243043.1 UniGene:Hs.403934 GeneID:431707
KEGG:hsa:431707 CTD:431707 HGNC:HGNC:28838 GenomeRNAi:431707
IPI:IPI00480117 ProteinModelPortal:E9PGE3 SMR:E9PGE3
Ensembl:ENST00000356261 ArrayExpress:E9PGE3 Bgee:E9PGE3
Uniprot:E9PGE3
Length = 346
Score = 206 (77.6 bits), Expect = 2.2e-16, P = 2.2e-16
Identities = 33/85 (38%), Positives = 53/85 (62%)
Query: 70 LDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCG 129
L + +C+++D +CK DY R +GT+C +C + D+V RAK +YH+ CF C C
Sbjct: 99 LGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCK 158
Query: 130 KQLVPGDEFALREDGLFCKDDHEGM 154
+QL G+EFAL E+ + C+ ++ M
Sbjct: 159 RQLSTGEEFALVEEKVLCRVHYDCM 183
Score = 137 (53.3 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+C CG +I D+Y+L+V DL WH CL C+ C L + +C+++D +CK DY
Sbjct: 64 VCNSCGLEIVDKYLLKVN-DLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY 118
>UNIPROTKB|F1P4G9 [details] [associations]
symbol:LHX8 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007611
"learning or memory" evidence=IEA] [GO:0008585 "female gonad
development" evidence=IEA] [GO:0021884 "forebrain neuron
development" evidence=IEA] [GO:0042475 "odontogenesis of
dentin-containing tooth" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 OMA:MYWKSDQ EMBL:AADN02012385
IPI:IPI00572692 Ensembl:ENSGALT00000018546 Uniprot:F1P4G9
Length = 347
Score = 206 (77.6 bits), Expect = 2.2e-16, P = 2.2e-16
Identities = 33/85 (38%), Positives = 53/85 (62%)
Query: 70 LDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCG 129
L + +C+++D +CK DY R +GT+C +C + D+V RAK +YH+ CF C C
Sbjct: 100 LGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCK 159
Query: 130 KQLVPGDEFALREDGLFCKDDHEGM 154
+QL G+EFAL E+ + C+ ++ M
Sbjct: 160 RQLSTGEEFALVEEKVLCRVHYDCM 184
Score = 138 (53.6 bits), Expect = 8.4e-09, P = 8.4e-09
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+C CG +I D+Y+L+V DL WH CL C+ C L + +C+++D +CK DY
Sbjct: 65 VCSSCGLEIVDKYLLKVN-DLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY 119
>UNIPROTKB|Q68G74 [details] [associations]
symbol:LHX8 "LIM/homeobox protein Lhx8" species:9606 "Homo
sapiens" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007611 "learning or memory" evidence=IEA]
[GO:0008585 "female gonad development" evidence=IEA] [GO:0021884
"forebrain neuron development" evidence=IEA] [GO:0042475
"odontogenesis of dentin-containing tooth" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0008585 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0007611 Gene3D:2.10.110.10 GO:GO:0042475 GO:GO:0021884
eggNOG:NOG264882 HSSP:P06601 HOGENOM:HOG000038965
HOVERGEN:HBG006261 KO:K09375 EMBL:AC099786 EMBL:BC040321
IPI:IPI00470355 RefSeq:NP_001001933.1 RefSeq:NP_001243043.1
UniGene:Hs.403934 ProteinModelPortal:Q68G74 SMR:Q68G74
STRING:Q68G74 PhosphoSite:Q68G74 DMDM:296434566 PRIDE:Q68G74
DNASU:431707 Ensembl:ENST00000294638 GeneID:431707 KEGG:hsa:431707
UCSC:uc001dgo.3 CTD:431707 GeneCards:GC01P075594 HGNC:HGNC:28838
MIM:604425 neXtProt:NX_Q68G74 PharmGKB:PA142671553
InParanoid:Q68G74 OMA:MYWKSDQ OrthoDB:EOG48WC27 GenomeRNAi:431707
NextBio:108706 ArrayExpress:Q68G74 Bgee:Q68G74 CleanEx:HS_LHX8
Genevestigator:Q68G74 Uniprot:Q68G74
Length = 356
Score = 206 (77.6 bits), Expect = 2.5e-16, P = 2.5e-16
Identities = 33/85 (38%), Positives = 53/85 (62%)
Query: 70 LDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCG 129
L + +C+++D +CK DY R +GT+C +C + D+V RAK +YH+ CF C C
Sbjct: 109 LGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCK 168
Query: 130 KQLVPGDEFALREDGLFCKDDHEGM 154
+QL G+EFAL E+ + C+ ++ M
Sbjct: 169 RQLSTGEEFALVEEKVLCRVHYDCM 193
Score = 137 (53.3 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+C CG +I D+Y+L+V DL WH CL C+ C L + +C+++D +CK DY
Sbjct: 74 VCNSCGLEIVDKYLLKVN-DLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY 128
>UNIPROTKB|E1BBB7 [details] [associations]
symbol:LHX8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0042475
"odontogenesis of dentin-containing tooth" evidence=IEA]
[GO:0021884 "forebrain neuron development" evidence=IEA]
[GO:0008585 "female gonad development" evidence=IEA] [GO:0007611
"learning or memory" evidence=IEA] [GO:0043565 "sequence-specific
DNA binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0008585 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0007611 Gene3D:2.10.110.10 GO:GO:0042475 GO:GO:0021884
GeneTree:ENSGT00700000104050 OMA:MYWKSDQ EMBL:DAAA02008298
IPI:IPI00713787 Ensembl:ENSBTAT00000025544 Uniprot:E1BBB7
Length = 371
Score = 206 (77.6 bits), Expect = 3.0e-16, P = 3.0e-16
Identities = 33/85 (38%), Positives = 53/85 (62%)
Query: 70 LDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCG 129
L + +C+++D +CK DY R +GT+C +C + D+V RAK +YH+ CF C C
Sbjct: 130 LGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCK 189
Query: 130 KQLVPGDEFALREDGLFCKDDHEGM 154
+QL G+EFAL E+ + C+ ++ M
Sbjct: 190 RQLSTGEEFALVEEKVLCRVHYDCM 214
Score = 138 (53.6 bits), Expect = 9.6e-09, P = 9.6e-09
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+C CG +I D+Y+L+V DL WH CL C+ C L + +C+++D +CK DY
Sbjct: 95 VCSSCGLEIVDKYLLKVN-DLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY 149
>UNIPROTKB|E2REU0 [details] [associations]
symbol:LHX8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 OMA:MYWKSDQ EMBL:AAEX03004901
EMBL:AAEX03004902 Ensembl:ENSCAFT00000032488 Uniprot:E2REU0
Length = 379
Score = 206 (77.6 bits), Expect = 3.2e-16, P = 3.2e-16
Identities = 33/85 (38%), Positives = 53/85 (62%)
Query: 70 LDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCG 129
L + +C+++D +CK DY R +GT+C +C + D+V RAK +YH+ CF C C
Sbjct: 132 LGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCK 191
Query: 130 KQLVPGDEFALREDGLFCKDDHEGM 154
+QL G+EFAL E+ + C+ ++ M
Sbjct: 192 RQLSTGEEFALVEEKVLCRVHYDCM 216
Score = 139 (54.0 bits), Expect = 7.8e-09, P = 7.8e-09
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+C CG +I D+Y+L+V DL WH CL C+ C L + +C+++D +CK DY
Sbjct: 97 VCNSCGREIVDKYLLKVN-DLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY 151
>ZFIN|ZDB-GENE-010702-1 [details] [associations]
symbol:lmo4a "LIM domain only 4a" species:7955 "Danio
rerio" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0030900 "forebrain
development" evidence=IMP;IDA] [GO:0031076 "embryonic camera-type
eye development" evidence=IMP;IDA] [GO:0046872 "metal ion binding"
evidence=IEA] Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478
PROSITE:PS50023 SMART:SM00132 ZFIN:ZDB-GENE-010702-1 GO:GO:0046872
GO:GO:0008270 GO:GO:0030900 Gene3D:2.10.110.10 GO:GO:0031076
GeneTree:ENSGT00700000104177 HSSP:P70662 HOGENOM:HOG000232175
HOVERGEN:HBG054231 eggNOG:NOG314117 OMA:DRYWHTR EMBL:CR855258
EMBL:BC045835 EMBL:AY028903 IPI:IPI00495249 RefSeq:NP_817093.1
UniGene:Dr.107376 SMR:Q8QG63 STRING:Q8QG63
Ensembl:ENSDART00000085219 GeneID:114412 KEGG:dre:114412 CTD:114412
InParanoid:Q8QG63 OrthoDB:EOG4T4CWR NextBio:20796903 Uniprot:Q8QG63
Length = 167
Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 40/121 (33%), Positives = 58/121 (47%)
Query: 35 CAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFG 94
CA C + + F D + + S + Q + TCF + G C+ DY+RLFG
Sbjct: 24 CAGCGGRISDRFLLFSMDRYWHTRCLKCSCCQAQLGEIGSTCFSKGGMILCRNDYIRLFG 83
Query: 95 TK--CEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHE 152
C C + + VMRA+ +YH++CF C C +LVPGD F +FC+ D
Sbjct: 84 HSGACSACGQSIPASEMVMRAQGNVYHLKCFTCATCRNRLVPGDRFHYVNGTIFCEHDRP 143
Query: 153 G 153
G
Sbjct: 144 G 144
Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 24/57 (42%), Positives = 34/57 (59%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDE-NCTCFVRDGKTYCKRDYV 62
C GCGG+I D+++L + D WH CL+C+ C L E TCF + G C+ DY+
Sbjct: 24 CAGCGGRISDRFLL-FSMDRYWHTRCLKCSCCQAQLGEIGSTCFSKGGMILCRNDYI 79
>UNIPROTKB|Q6DJ06 [details] [associations]
symbol:lmo4.2 "LIM domain transcription factor LMO4.2"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003712
"transcription cofactor activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0007498 "mesoderm
development" evidence=ISS] [GO:0045665 "negative regulation of
neuron differentiation" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478
PROSITE:PS50023 SMART:SM00132 GO:GO:0007498 GO:GO:0046872
GO:GO:0008270 GO:GO:0045944 GO:GO:0045665 GO:GO:0006351
Gene3D:2.10.110.10 GO:GO:0003712 GO:GO:0007369
GeneTree:ENSGT00700000104177 HSSP:P61969 HOGENOM:HOG000232175
HOVERGEN:HBG054231 eggNOG:NOG314117 EMBL:CR760333 EMBL:BC075379
RefSeq:NP_001004922.1 UniGene:Str.145 ProteinModelPortal:Q6DJ06
SMR:Q6DJ06 Ensembl:ENSXETT00000053847 GeneID:448304 KEGG:xtr:448304
CTD:447751 Xenbase:XB-GENE-971939 InParanoid:Q6DJ06 OMA:ALSWKRC
Bgee:Q6DJ06 Uniprot:Q6DJ06
Length = 165
Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 41/130 (31%), Positives = 61/130 (46%)
Query: 23 APDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGK 82
A L W RCA C + + + D + + S + Q + +C+ + G
Sbjct: 15 ASTLSWK----RCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGEIGTSCYTKSGM 70
Query: 83 TYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFAL 140
C+ DY+RLFG C C + + VMRA+ +YH++CF C C +LVPGD F
Sbjct: 71 ILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHY 130
Query: 141 REDGLFCKDD 150
LFC+ D
Sbjct: 131 INGSLFCEHD 140
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDE-NCTCFVRDGKTYCKRDYV 62
C GCGG+I D+++L A D WH+ CL+C+ C L E +C+ + G C+ DY+
Sbjct: 23 CAGCGGKIADRFLL-YAMDSYWHSRCLKCSCCQAQLGEIGTSCYTKSGMILCRNDYI 78
>FB|FBgn0032196 [details] [associations]
symbol:CG5708 species:7227 "Drosophila melanogaster"
[GO:0008270 "zinc ion binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
EMBL:AE014134 GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10
HSSP:P25801 GeneTree:ENSGT00700000104177 eggNOG:NOG314117
EMBL:BT012487 RefSeq:NP_609359.1 RefSeq:NP_723534.1
UniGene:Dm.18161 SMR:Q9VL21 IntAct:Q9VL21 MINT:MINT-885753
STRING:Q9VL21 EnsemblMetazoa:FBtr0079955 EnsemblMetazoa:FBtr0079956
GeneID:34361 KEGG:dme:Dmel_CG5708 UCSC:CG5708-RA
FlyBase:FBgn0032196 InParanoid:Q9VL21 OMA:FMDESSN OrthoDB:EOG4VQ858
GenomeRNAi:34361 NextBio:788118 Uniprot:Q9VL21
Length = 241
Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 47/148 (31%), Positives = 70/148 (47%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDE-NCTCFVRDGKTYCKRDYV 62
+ +C GCG +I D+Y+L A D WH CL+C C L E +CF R G CK+DY
Sbjct: 75 IKVCGGCGDKISDRYLL-YALDRYWHNGCLKCHCCGAMLAEVGSSCFTRRGLILCKKDYS 133
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQC 122
S + C G+T + V T +L +++ + N ++H++C
Sbjct: 134 SMFGCSGVCSGC------GETIPPSELVAKALTGINNIDLQNQQKQII----NCVFHLRC 183
Query: 123 FCCVVCGKQLVPGDEFALREDGLFCKDD 150
F C CG L PGD + + L C+ D
Sbjct: 184 FSCAKCGSSLRPGDRYTMLGASLVCEQD 211
>FB|FBgn0000099 [details] [associations]
symbol:ap "apterous" species:7227 "Drosophila melanogaster"
[GO:0007559 "histolysis" evidence=IMP] [GO:0005634 "nucleus"
evidence=NAS;IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0000977 "RNA polymerase II regulatory region
sequence-specific DNA binding" evidence=IDA] [GO:0007472 "wing disc
morphogenesis" evidence=NAS] [GO:0008270 "zinc ion binding"
evidence=IEA;NAS] [GO:0007481 "haltere disc morphogenesis"
evidence=NAS] [GO:0006351 "transcription, DNA-dependent"
evidence=IMP;TAS] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0007399 "nervous system development" evidence=IMP;TAS]
[GO:0007517 "muscle organ development" evidence=IMP;TAS]
[GO:0007479 "leg disc proximal/distal pattern formation"
evidence=IMP] [GO:0045165 "cell fate commitment" evidence=NAS]
[GO:0048190 "wing disc dorsal/ventral pattern formation"
evidence=IGI;IMP;TAS] [GO:0007451 "dorsal/ventral lineage
restriction, imaginal disc" evidence=TAS] [GO:0007476 "imaginal
disc-derived wing morphogenesis" evidence=TAS] [GO:0007450
"dorsal/ventral pattern formation, imaginal disc" evidence=TAS]
[GO:0036011 "imaginal disc-derived leg segmentation" evidence=IMP]
[GO:0035218 "leg disc development" evidence=IMP] [GO:0007526
"larval somatic muscle development" evidence=IMP] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
EMBL:AE013599 GO:GO:0005634 GO:GO:0007411 GO:GO:0048190
GO:GO:0046872 GO:GO:0008270 GO:GO:0045944 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GO:GO:0007517 GO:GO:0007526 GO:GO:0007476 EMBL:X65158 EMBL:M92841
EMBL:AY069815 EMBL:BT005201 PIR:JH0718 RefSeq:NP_001163058.1
RefSeq:NP_001163059.1 RefSeq:NP_523621.2 RefSeq:NP_724428.1
UniGene:Dm.4746 ProteinModelPortal:P29673 SMR:P29673 DIP:DIP-23617N
IntAct:P29673 MINT:MINT-338208 STRING:P29673 PaxDb:P29673
PRIDE:P29673 EnsemblMetazoa:FBtr0086058 GeneID:35509
KEGG:dme:Dmel_CG8376 UCSC:CG8376-RA CTD:11763 FlyBase:FBgn0000099
eggNOG:NOG240987 GeneTree:ENSGT00680000099670 InParanoid:P29673
KO:K09373 OMA:THYSIAR OrthoDB:EOG46Q57V PhylomeDB:P29673 ChiTaRS:ap
GenomeRNAi:35509 NextBio:793761 Bgee:P29673 GermOnline:CG8376
GO:GO:0000977 GO:GO:0045165 GO:GO:0007451 GO:GO:0007559
GO:GO:0036011 GO:GO:0007479 Uniprot:P29673
Length = 469
Score = 208 (78.3 bits), Expect = 3.8e-16, P = 3.8e-16
Identities = 33/82 (40%), Positives = 50/82 (60%)
Query: 68 QFLDENCTCFVRDGKTYCKRDYVRLFGTK-CEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
Q L+ +C+ RDG YCK DY FGT+ C +C + + VMRA+N ++HV CFCC
Sbjct: 180 QPLERESSCYSRDGNIYCKNDYYSFFGTRRCSRCLASISSNELVMRARNLVFHVNCFCCT 239
Query: 127 VCGKQLVPGDEFALREDGLFCK 148
VC L GD++ + + ++C+
Sbjct: 240 VCHTPLTKGDQYGIIDALIYCR 261
Score = 168 (64.2 bits), Expect = 8.4e-12, P = 8.4e-12
Identities = 30/62 (48%), Positives = 38/62 (61%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
R L C GCG QI D++ L A + WHA+CL+C C Q L+ +C+ RDG YCK DY
Sbjct: 143 RNLDDCSGCGRQIQDRFYLS-AVEKRWHASCLQCYACRQPLERESSCYSRDGNIYCKNDY 201
Query: 62 VS 63
S
Sbjct: 202 YS 203
>WB|WBGene00000438 [details] [associations]
symbol:ceh-14 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA;ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0040040 "thermosensory behavior" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] Pfam:PF00412 InterPro:IPR001841
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00184
SMART:SM00389 GO:GO:0005634 GO:GO:0030182 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0040040 EMBL:FO081392
GO:GO:0016048 EMBL:AF244368 PIR:S05710 RefSeq:NP_509273.1
UniGene:Cel.18140 ProteinModelPortal:P20271 SMR:P20271
IntAct:P20271 STRING:P20271 PaxDb:P20271 EnsemblMetazoa:F46C8.5
GeneID:181012 KEGG:cel:CELE_F46C8.5 UCSC:F46C8.5 CTD:181012
WormBase:F46C8.5 eggNOG:NOG275246 GeneTree:ENSGT00700000104177
HOGENOM:HOG000231629 InParanoid:P20271 KO:K09374 OMA:PIESING
NextBio:911980 Uniprot:P20271
Length = 351
Score = 204 (76.9 bits), Expect = 4.0e-16, P = 4.0e-16
Identities = 39/90 (43%), Positives = 52/90 (57%)
Query: 71 DE-NCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCG 129
DE TCF+R+ YC+ + + FGTKC CN + V +A N +YHV+CF C +C
Sbjct: 80 DELGATCFLREDSMYCRAHFYKKFGTKCSSCNEGIVPDHVVRKASNHVYHVECFQCFICK 139
Query: 130 KQLVPGDEFALREDG--LFCKDDHE-GMDK 156
+ L G+EF L D L CKDD+E DK
Sbjct: 140 RSLETGEEFYLIADDARLVCKDDYEQARDK 169
>UNIPROTKB|P20271 [details] [associations]
symbol:ceh-14 "Homeobox protein ceh-14" species:6239
"Caenorhabditis elegans" [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0008270 "zinc ion binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0016048 "detection of
temperature stimulus" evidence=IMP] Pfam:PF00412 InterPro:IPR001841
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00184
SMART:SM00389 GO:GO:0005634 GO:GO:0030182 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0040040 EMBL:FO081392
GO:GO:0016048 EMBL:AF244368 PIR:S05710 RefSeq:NP_509273.1
UniGene:Cel.18140 ProteinModelPortal:P20271 SMR:P20271
IntAct:P20271 STRING:P20271 PaxDb:P20271 EnsemblMetazoa:F46C8.5
GeneID:181012 KEGG:cel:CELE_F46C8.5 UCSC:F46C8.5 CTD:181012
WormBase:F46C8.5 eggNOG:NOG275246 GeneTree:ENSGT00700000104177
HOGENOM:HOG000231629 InParanoid:P20271 KO:K09374 OMA:PIESING
NextBio:911980 Uniprot:P20271
Length = 351
Score = 204 (76.9 bits), Expect = 4.0e-16, P = 4.0e-16
Identities = 39/90 (43%), Positives = 52/90 (57%)
Query: 71 DE-NCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCG 129
DE TCF+R+ YC+ + + FGTKC CN + V +A N +YHV+CF C +C
Sbjct: 80 DELGATCFLREDSMYCRAHFYKKFGTKCSSCNEGIVPDHVVRKASNHVYHVECFQCFICK 139
Query: 130 KQLVPGDEFALREDG--LFCKDDHE-GMDK 156
+ L G+EF L D L CKDD+E DK
Sbjct: 140 RSLETGEEFYLIADDARLVCKDDYEQARDK 169
>MGI|MGI:1096343 [details] [associations]
symbol:Lhx8 "LIM homeobox protein 8" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0007611 "learning or memory" evidence=IMP] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0008585 "female gonad development"
evidence=IMP] [GO:0021879 "forebrain neuron differentiation"
evidence=IMP] [GO:0021884 "forebrain neuron development"
evidence=IGI] [GO:0042475 "odontogenesis of dentin-containing
tooth" evidence=IMP] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 MGI:MGI:1096343 GO:GO:0005634 GO:GO:0008585
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0007611
Gene3D:2.10.110.10 GO:GO:0042475 EMBL:CH466532 GO:GO:0021884
eggNOG:NOG264882 GeneTree:ENSGT00700000104050 HOGENOM:HOG000038965
HOVERGEN:HBG006261 KO:K09375 CTD:431707 OMA:MYWKSDQ
OrthoDB:EOG48WC27 EMBL:D49658 EMBL:AB007596 EMBL:AJ000338
EMBL:AK165733 EMBL:BC125281 EMBL:BC125283 EMBL:BC144768
IPI:IPI00132791 RefSeq:NP_034843.2 UniGene:Mm.15530
ProteinModelPortal:O35652 SMR:O35652 STRING:O35652
PhosphoSite:O35652 PRIDE:O35652 Ensembl:ENSMUST00000177846
GeneID:16875 KEGG:mmu:16875 InParanoid:Q3TMT2 NextBio:290860
Bgee:O35652 CleanEx:MM_LHX8 Genevestigator:O35652
GermOnline:ENSMUSG00000028201 Uniprot:O35652
Length = 367
Score = 204 (76.9 bits), Expect = 4.8e-16, P = 4.8e-16
Identities = 32/79 (40%), Positives = 50/79 (63%)
Query: 70 LDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCG 129
L + +C+++D +CK DY R +GT+C +C + D+V RAK +YH+ CF C C
Sbjct: 130 LGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCK 189
Query: 130 KQLVPGDEFALREDGLFCK 148
+QL G+EFAL E+ + C+
Sbjct: 190 RQLSTGEEFALVEEKVLCR 208
Score = 138 (53.6 bits), Expect = 9.4e-09, P = 9.4e-09
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+C CG +I D+Y+L+V DL WH CL C+ C L + +C+++D +CK DY
Sbjct: 95 VCSSCGLEIVDKYLLKVN-DLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY 149
>UNIPROTKB|G3V6V6 [details] [associations]
symbol:Lhx8 "RCG29002" species:10116 "Rattus norvegicus"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007611 "learning or memory" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0008585 "female gonad development"
evidence=IEA] [GO:0021884 "forebrain neuron development"
evidence=IEA] [GO:0042475 "odontogenesis of dentin-containing
tooth" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 RGD:1308749 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GeneTree:ENSGT00700000104050 EMBL:CH473952
OMA:MYWKSDQ Ensembl:ENSRNOT00000009370 Uniprot:G3V6V6
Length = 367
Score = 204 (76.9 bits), Expect = 4.8e-16, P = 4.8e-16
Identities = 32/79 (40%), Positives = 50/79 (63%)
Query: 70 LDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCG 129
L + +C+++D +CK DY R +GT+C +C + D+V RAK +YH+ CF C C
Sbjct: 130 LGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCK 189
Query: 130 KQLVPGDEFALREDGLFCK 148
+QL G+EFAL E+ + C+
Sbjct: 190 RQLSTGEEFALVEEKVLCR 208
Score = 138 (53.6 bits), Expect = 9.4e-09, P = 9.4e-09
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+C CG +I D+Y+L+V DL WH CL C+ C L + +C+++D +CK DY
Sbjct: 95 VCSSCGLEIVDKYLLKVN-DLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY 149
>ZFIN|ZDB-GENE-980526-116 [details] [associations]
symbol:lhx1b "LIM homeobox 1b" species:7955 "Danio
rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389
ZFIN:ZDB-GENE-980526-116 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 HSSP:P06601 GeneTree:ENSGT00700000104177
eggNOG:NOG257130 HOGENOM:HOG000231630 HOVERGEN:HBG006263
EMBL:BX255908 EMBL:AF001299 EMBL:BC162280 EMBL:BC162303
IPI:IPI00505711 RefSeq:NP_571282.1 UniGene:Dr.277
Ensembl:ENSDART00000021159 GeneID:30454 KEGG:dre:30454 CTD:30454
InParanoid:O13106 OrthoDB:EOG49CQ7Z NextBio:20806849 Uniprot:O13106
Length = 402
Score = 205 (77.2 bits), Expect = 5.2e-16, P = 5.2e-16
Identities = 40/120 (33%), Positives = 63/120 (52%)
Query: 33 LRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRL 92
+ CA C + + + V D + K K D CF R+G+ YCK D+ R
Sbjct: 2 VHCAGCERPILDRFLLSVLDRAWHAKCVQCCDCKCSLTDR---CFSREGRLYCKNDFFRR 58
Query: 93 FGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLF-CKDDH 151
+GTKC C D V +A++K++H+ CF C++C KQL G+E + ++ F CK+D+
Sbjct: 59 YGTKCGGCAQGISPSDLVRKARSKVFHLNCFTCIMCNKQLSTGEELYILDEYKFVCKEDY 118
Score = 130 (50.8 bits), Expect = 8.3e-08, P = 8.3e-08
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
C GC I D+++L V D WHA C++C +C L + C F R+G+ YCK D+
Sbjct: 4 CAGCERPILDRFLLSVL-DRAWHAKCVQCCDCKCSLTDRC--FSREGRLYCKNDF 55
>UNIPROTKB|A2PZF9 [details] [associations]
symbol:lhx9 "LIM/homeobox protein Lhx9" species:8410
"Glandirana rugosa" [GO:0003714 "transcription corepressor
activity" evidence=ISS] [GO:0008045 "motor neuron axon guidance"
evidence=ISS] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=ISS] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0003714 GO:GO:0045892 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0008045 HOVERGEN:HBG006262 EMBL:AB269882
EMBL:AB269883 EMBL:AB269884 EMBL:AB269885 EMBL:AB269886
ProteinModelPortal:A2PZF9 SMR:A2PZF9 Uniprot:A2PZF9
Length = 379
Score = 204 (76.9 bits), Expect = 5.4e-16, P = 5.4e-16
Identities = 39/110 (35%), Positives = 54/110 (49%)
Query: 35 CAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFG 94
CA C + + D K + R E L+ TCF +DG YCK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVD-KQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFS 111
Query: 95 T-KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALRED 143
+C +C+L + VMRA+ +YH+ CF C C K L GD F ++E+
Sbjct: 112 VQRCARCHLGISASEIVMRARESVYHLSCFTCTTCNKTLSTGDHFGMKEN 161
Score = 189 (71.6 bits), Expect = 2.5e-14, P = 2.5e-14
Identities = 44/127 (34%), Positives = 59/127 (46%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
+LC GCGG+I D+Y L +A D +WH CL+C EC L+ TCF +DG YCK DY
Sbjct: 51 TLCAGCGGKISDRYYL-LAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRR 109
Query: 65 EKNQFLDENCTCFVRDGKTYCK-RDYV-RLFGTKCEKCNLNFKREDFVMRAKNKIYHVQC 122
Q C + + + R+ V L C CN D +N +Y
Sbjct: 110 FSVQRC-ARCHLGISASEIVMRARESVYHLSCFTCTTCNKTLSTGDHFGMKENLVYRRAH 168
Query: 123 FCCVVCG 129
F +V G
Sbjct: 169 FELLVQG 175
>ZFIN|ZDB-GENE-081105-153 [details] [associations]
symbol:lhx8b "LIM homeobox 8b" species:7955 "Danio
rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 Pfam:PF00046 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
ZFIN:ZDB-GENE-081105-153 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GeneTree:ENSGT00700000104050 EMBL:CR388090
IPI:IPI00635015 Ensembl:ENSDART00000061776 Uniprot:F1QST6
Length = 295
Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 49/128 (38%), Positives = 63/128 (49%)
Query: 30 AACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDY 89
A C RC E H LD + V D + R S L E TC+VR+ + +CK Y
Sbjct: 22 AVCTRCRE-H-ILDRHLLK-VND-MCWHARCLSCSVCQTTLSEQTTCYVREREIFCKLHY 77
Query: 90 VRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKD 149
R F T C C D+V RAK +YH+ CF C C +QL G+EFAL + L C+
Sbjct: 78 FRRFQTWCSCCRETLHSSDWVHRAKGNVYHLACFSCFSCKRQLSTGEEFALVGEKLLCRI 137
Query: 150 DHEGM-DK 156
+ M DK
Sbjct: 138 HYSSMLDK 145
Score = 132 (51.5 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
++C C I D+++L+V D+ WHA CL C+ C L E TC+VR+ + +CK Y
Sbjct: 22 AVCTRCREHILDRHLLKVN-DMCWHARCLSCSVCQTTLSEQTTCYVREREIFCKLHY 77
>ZFIN|ZDB-GENE-030131-3570 [details] [associations]
symbol:lmo4b "LIM domain only 4b" species:7955
"Danio rerio" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
ZFIN:ZDB-GENE-030131-3570 GO:GO:0046872 GO:GO:0008270
Gene3D:2.10.110.10 HSSP:P70662 HOVERGEN:HBG054231 EMBL:AF398515
IPI:IPI00497185 RefSeq:NP_997854.1 UniGene:Dr.78922
ProteinModelPortal:Q8JFQ1 SMR:Q8JFQ1 STRING:Q8JFQ1 GeneID:324849
KEGG:dre:324849 CTD:324849 InParanoid:Q8JFQ1 NextBio:20808994
ArrayExpress:Q8JFQ1 Uniprot:Q8JFQ1
Length = 165
Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 41/130 (31%), Positives = 60/130 (46%)
Query: 23 APDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGK 82
A L W RCA C + + + D + + S + Q + C+ + G
Sbjct: 15 AGSLSWK----RCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGEIGTFCYTKSGM 70
Query: 83 TYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFAL 140
C+ DY+RLFG C C + + VMRA+ +YH++CF C C +LVPGD F
Sbjct: 71 ILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHY 130
Query: 141 REDGLFCKDD 150
LFC+ D
Sbjct: 131 INGSLFCEHD 140
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 24/57 (42%), Positives = 35/57 (61%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCT-CFVRDGKTYCKRDYV 62
C GCGG+I D+++L A D WH+ CL+C+ C L E T C+ + G C+ DY+
Sbjct: 23 CAGCGGKIADRFLL-YAMDSYWHSRCLKCSCCQAQLGEIGTFCYTKSGMILCRNDYI 78
>ZFIN|ZDB-GENE-031008-2 [details] [associations]
symbol:lhx8a "LIM homeobox 8a" species:7955 "Danio
rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 ZFIN:ZDB-GENE-031008-2
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
HOVERGEN:HBG006261 KO:K09375 EMBL:BC117601 EMBL:AY664404
IPI:IPI00487481 RefSeq:NP_001003980.1 UniGene:Dr.82056
STRING:Q6BDC3 GeneID:378959 KEGG:dre:378959 CTD:378959
InParanoid:Q6BDC3 NextBio:20813902 Uniprot:Q6BDC3
Length = 332
Score = 199 (75.1 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 32/85 (37%), Positives = 52/85 (61%)
Query: 70 LDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCG 129
L + +C++++ + +CK DY R +GT+C C N D+V RAK YH+ CF C C
Sbjct: 85 LGRHISCYIKEKEIFCKLDYFRKYGTRCAHCGRNIHSNDWVRRAKGNTYHLACFACFSCK 144
Query: 130 KQLVPGDEFALREDGLFCKDDHEGM 154
+QL G+EFAL ++ + C+ ++ M
Sbjct: 145 RQLSTGEEFALVDERVLCRVHYDCM 169
Score = 140 (54.3 bits), Expect = 4.6e-09, P = 4.6e-09
Identities = 21/57 (36%), Positives = 37/57 (64%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
++C CG +I D+Y+L+V D+ WH CL C+ C L + +C++++ + +CK DY
Sbjct: 49 AICTSCGTEIVDKYLLKVN-DMCWHVRCLSCSVCQTSLGRHISCYIKEKEIFCKLDY 104
>ZFIN|ZDB-GENE-091118-109 [details] [associations]
symbol:lhx2a "LIM homeobox 2a" species:7955 "Danio
rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 ZFIN:ZDB-GENE-091118-109 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GeneTree:ENSGT00680000099670
EMBL:BX470252 IPI:IPI00994306 Ensembl:ENSDART00000134360
ArrayExpress:E9QBI8 Bgee:E9QBI8 Uniprot:E9QBI8
Length = 328
Score = 195 (73.7 bits), Expect = 3.0e-15, P = 3.0e-15
Identities = 36/116 (31%), Positives = 60/116 (51%)
Query: 35 CAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYV-RLF 93
CA C + + + + + +R S L+ TCF + G YCK DY R F
Sbjct: 13 CAGCGALISDRFYLLAAERRWH-ERCLKCSACQTDLESELTCFSKHGDIYCKEDYYSRRF 71
Query: 94 GT-KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCK 148
+ +C +C+L + VMRA++ +YH+ CF C C K L+ GD + ++E ++C+
Sbjct: 72 SSQRCARCHLGISATEIVMRARDLVYHLSCFSCATCHKVLLTGDHYGMKETSVYCR 127
Score = 161 (61.7 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 40/127 (31%), Positives = 56/127 (44%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
+C GCG I D++ L +A + WH CL+C+ C L+ TCF + G YCK DY S
Sbjct: 12 VCAGCGALISDRFYL-LAAERRWHERCLKCSACQTDLESELTCFSKHGDIYCKEDYYS-- 68
Query: 66 KNQFLDENCT-CFVRDGKTYC---KRDYV-RLFGTKCEKCNLNFKREDFVMRAKNKIY-- 118
+F + C C + T RD V L C C+ D + +Y
Sbjct: 69 -RRFSSQRCARCHLGISATEIVMRARDLVYHLSCFSCATCHKVLLTGDHYGMKETSVYCR 127
Query: 119 -HVQCFC 124
H+Q C
Sbjct: 128 AHIQREC 134
>UNIPROTKB|Q5FVB2 [details] [associations]
symbol:lmo4.1 "LIM domain transcription factor LMO4.1"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003712
"transcription cofactor activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0007498 "mesoderm
development" evidence=ISS] [GO:0045665 "negative regulation of
neuron differentiation" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478
PROSITE:PS50023 SMART:SM00132 GO:GO:0007498 GO:GO:0046872
GO:GO:0008270 GO:GO:0045944 GO:GO:0045665 GO:GO:0006351
Gene3D:2.10.110.10 GO:GO:0003712 GO:GO:0007369
GeneTree:ENSGT00700000104177 HSSP:P61969 HOGENOM:HOG000232175
HOVERGEN:HBG054231 EMBL:BC090104 RefSeq:NP_001015822.1
UniGene:Str.52903 ProteinModelPortal:Q5FVB2 SMR:Q5FVB2
Ensembl:ENSXETT00000050669 GeneID:548539 KEGG:xtr:548539 CTD:548539
Xenbase:XB-GENE-479327 eggNOG:NOG314117 InParanoid:Q5FVB2
OMA:DRYWHTR OrthoDB:EOG4XKV82 Bgee:Q5FVB2 Uniprot:Q5FVB2
Length = 167
Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 30/78 (38%), Positives = 45/78 (57%)
Query: 75 TCFVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQL 132
+C+ + G C+ DY+RLFG+ C C + + VMRA+ +YH++CF C C +L
Sbjct: 64 SCYTKSGMILCRNDYIRLFGSSGACSACGQSIPASEMVMRAQGSVYHLKCFTCATCRNRL 123
Query: 133 VPGDEFALREDGLFCKDD 150
VPGD F +FC+ D
Sbjct: 124 VPGDRFHYVNGAIFCEHD 141
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDE-NCTCFVRDGKTYCKRDYV 62
C GCGG+I D+++L + + WH CL+C+ C L E +C+ + G C+ DY+
Sbjct: 24 CAGCGGKIADRFLL-YSMERYWHTRCLKCSCCQAQLGEIGTSCYTKSGMILCRNDYI 79
>UNIPROTKB|Q8AW92 [details] [associations]
symbol:lmo4-a "LIM domain transcription factor LMO4-A"
species:8355 "Xenopus laevis" [GO:0003712 "transcription cofactor
activity" evidence=IMP] [GO:0005575 "cellular_component"
evidence=ND] [GO:0007498 "mesoderm development" evidence=IMP]
[GO:0045665 "negative regulation of neuron differentiation"
evidence=IMP] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IMP] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
GO:GO:0007498 GO:GO:0046872 GO:GO:0008270 GO:GO:0045944
GO:GO:0045665 GO:GO:0006351 Gene3D:2.10.110.10 GO:GO:0003712
GO:GO:0007369 HSSP:P61969 HOVERGEN:HBG054231 EMBL:AJ511277
EMBL:BC108585 RefSeq:NP_001079179.1 UniGene:Xl.5131
ProteinModelPortal:Q8AW92 SMR:Q8AW92 GeneID:373776 KEGG:xla:373776
CTD:373776 Xenbase:XB-GENE-865262 Uniprot:Q8AW92
Length = 171
Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 36/118 (30%), Positives = 57/118 (48%)
Query: 35 CAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFG 94
CA C + + + D + + S + Q + +C+ + G C+ DY+RLFG
Sbjct: 24 CAGCGGKIGDRFLLYSMDRYWHTRCLKCSCCQAQLGEIGTSCYTKSGMILCRNDYIRLFG 83
Query: 95 TK--CEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDD 150
C C + + VMRA+ +YH++CF C C +LVPGD F +FC+ D
Sbjct: 84 NSGACNACGQSIPASEMVMRAQGSVYHLKCFTCATCRNRLVPGDRFHYVNGTIFCEHD 141
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 22/57 (38%), Positives = 34/57 (59%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDE-NCTCFVRDGKTYCKRDYV 62
C GCGG+I D+++L + D WH CL+C+ C L E +C+ + G C+ DY+
Sbjct: 24 CAGCGGKIGDRFLL-YSMDRYWHTRCLKCSCCQAQLGEIGTSCYTKSGMILCRNDYI 79
>MGI|MGI:1306803 [details] [associations]
symbol:Lhx6 "LIM homeobox protein 6" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=NAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0021799 "cerebral cortex radially
oriented cell migration" evidence=IMP] [GO:0021800 "cerebral cortex
tangential migration" evidence=IMP] [GO:0021853 "cerebral cortex
GABAergic interneuron migration" evidence=IMP] [GO:0021877
"forebrain neuron fate commitment" evidence=IGI] [GO:0021884
"forebrain neuron development" evidence=IGI] [GO:0021895 "cerebral
cortex neuron differentiation" evidence=IGI] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0048469 "cell maturation" evidence=IMP]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 MGI:MGI:1306803 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0021884
GO:GO:0021877 GO:GO:0021853 GO:GO:0021800 eggNOG:NOG264882
GeneTree:ENSGT00700000104050 GO:GO:0048469 GO:GO:0021799 CTD:26468
HOGENOM:HOG000038965 HOVERGEN:HBG006261 KO:K09375 OrthoDB:EOG4GTKD8
EMBL:AJ000337 EMBL:AB031040 EMBL:AB031039 EMBL:AL773525
EMBL:BC065077 IPI:IPI00457813 IPI:IPI00457814 RefSeq:NP_001076595.1
RefSeq:NP_001076596.1 RefSeq:NP_032526.2 UniGene:Mm.12881
ProteinModelPortal:Q9R1R0 SMR:Q9R1R0 STRING:Q9R1R0 PRIDE:Q9R1R0
Ensembl:ENSMUST00000112961 Ensembl:ENSMUST00000112963
Ensembl:ENSMUST00000112966 Ensembl:ENSMUST00000148852 GeneID:16874
KEGG:mmu:16874 InParanoid:Q6P1H2 NextBio:290850 Bgee:Q9R1R0
Genevestigator:Q9R1R0 Uniprot:Q9R1R0
Length = 363
Score = 194 (73.4 bits), Expect = 6.1e-15, P = 6.1e-15
Identities = 32/85 (37%), Positives = 50/85 (58%)
Query: 70 LDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCG 129
L + +C++++ + YCK DY FGTKC +C D+V RA+ YH+ CF C C
Sbjct: 104 LRQQNSCYIKNKEIYCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCK 163
Query: 130 KQLVPGDEFALREDGLFCKDDHEGM 154
+QL G+EF L E+ + C+ ++ M
Sbjct: 164 RQLSTGEEFGLVEEKVLCRIHYDTM 188
Score = 140 (54.3 bits), Expect = 5.6e-09, P = 5.6e-09
Identities = 23/59 (38%), Positives = 38/59 (64%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
++C CG +I D+Y+L+V +L WH CL C+ C L + +C++++ + YCK DY S
Sbjct: 68 NICSSCGLEILDRYLLKVN-NLIWHVRCLECSVCRTSLRQQNSCYIKNKEIYCKMDYFS 125
>WB|WBGene00006654 [details] [associations]
symbol:ttx-3 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA;ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008355 "olfactory learning" evidence=IMP] [GO:0043052
"thermotaxis" evidence=IGI;IMP] [GO:0045664 "regulation of neuron
differentiation" evidence=IMP] [GO:0007409 "axonogenesis"
evidence=IMP] [GO:0040024 "dauer larval development" evidence=IGI]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0040040 "thermosensory behavior"
evidence=IGI;IMP] [GO:0008306 "associative learning" evidence=IMP]
[GO:0022401 "negative adaptation of signaling pathway"
evidence=IMP] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0045893 GO:GO:0045664
GO:GO:0008355 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GO:GO:0007409 GO:GO:0040024 GeneTree:ENSGT00680000099670 KO:K09373
GO:GO:0040040 GO:GO:0043052 HSSP:P06601 GO:GO:0022401 EMBL:Z81482
UniGene:Cel.19674 GeneID:181357 KEGG:cel:CELE_C40H5.5 CTD:181357
EMBL:U72211 PIR:T19871 RefSeq:NP_001257168.1
ProteinModelPortal:G5EE86 SMR:G5EE86 EnsemblMetazoa:C40H5.5a
WormBase:C40H5.5a OMA:CRADHAK NextBio:913598 Uniprot:G5EE86
Length = 409
Score = 195 (73.7 bits), Expect = 6.9e-15, P = 6.9e-15
Identities = 45/129 (34%), Positives = 67/129 (51%)
Query: 24 PDLEWHAACLRCAEC-HQFLDENCTCFVRDGKTY---CKRDYVSSEKNQFLDENCTCFVR 79
P +E A +C C +D+ + V DGK Y C R + ++ D+ C+VR
Sbjct: 100 PKIE-PALLNQCCLCTFAIVDKEIS--VVDGKYYHNNCLRCQMCDIPFEYSDK---CYVR 153
Query: 80 DGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFA 139
DG C+ D+ + + C KC + RED VM+AK I+H CF C +CG +L PGD +
Sbjct: 154 DGVFLCRADHAKRYQKCCRKCEIPLNREDMVMKAKEMIFHHACFVCFICGIKLNPGDYYT 213
Query: 140 LREDG-LFC 147
+ G L+C
Sbjct: 214 MSPQGHLYC 222
>ZFIN|ZDB-GENE-060531-41 [details] [associations]
symbol:si:ch211-236k19.2 "si:ch211-236k19.2"
species:7955 "Danio rerio" [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 ZFIN:ZDB-GENE-060531-41
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 EMBL:BX255921 IPI:IPI01006880
Ensembl:ENSDART00000073963 OMA:ANDWIRR Uniprot:F6P152
Length = 255
Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 75 TCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVP 134
+CF+R+ + +C+ DY FG KC +C D++ RA N IYH+ CF C C +QL
Sbjct: 41 SCFIRNKEIFCRTDYNSTFGIKCARCGHQVSANDWIRRAGNDIYHLACFACFFCKRQLST 100
Query: 135 GDEFALREDGLFCK 148
G+EF L E+ + C+
Sbjct: 101 GEEFGLMENQVLCR 114
Score = 140 (54.3 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 23/59 (38%), Positives = 37/59 (62%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
+C GC +I D+Y+L+V L WH CL+C+ C L +CF+R+ + +C+ DY S+
Sbjct: 1 ICTGCSTEIFDRYVLKVN-GLTWHLRCLQCSVCAVSLGHQNSCFIRNKEIFCRTDYNST 58
>UNIPROTKB|Q801P0 [details] [associations]
symbol:lmo4-b "LIM domain transcription factor LMO4-B"
species:8355 "Xenopus laevis" [GO:0003712 "transcription cofactor
activity" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0007498 "mesoderm development" evidence=ISS]
[GO:0045665 "negative regulation of neuron differentiation"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
GO:GO:0007498 GO:GO:0046872 GO:GO:0008270 GO:GO:0045944
GO:GO:0045665 GO:GO:0006351 Gene3D:2.10.110.10 GO:GO:0003712
GO:GO:0007369 HSSP:P61969 HOVERGEN:HBG054231 EMBL:BC048020
RefSeq:NP_001079705.1 UniGene:Xl.15362 ProteinModelPortal:Q801P0
SMR:Q801P0 GeneID:379392 KEGG:xla:379392 CTD:379392
Xenbase:XB-GENE-6256064 Uniprot:Q801P0
Length = 171
Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
Identities = 36/118 (30%), Positives = 57/118 (48%)
Query: 35 CAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFG 94
CA C + + + D + + S + Q + +C+ + G C+ DY+RLFG
Sbjct: 24 CAGCGGKIADRFLLYSMDRYWHTRCLKCSCCQAQLGEIGTSCYTKSGMILCRNDYIRLFG 83
Query: 95 TK--CEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDD 150
C C + + VMRA+ +YH++CF C C +LVPGD F +FC+ D
Sbjct: 84 NSGACNACGQSIPASEMVMRAQGSVYHLKCFTCATCRNRLVPGDRFHYVNGTIFCEHD 141
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 22/57 (38%), Positives = 34/57 (59%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDE-NCTCFVRDGKTYCKRDYV 62
C GCGG+I D+++L + D WH CL+C+ C L E +C+ + G C+ DY+
Sbjct: 24 CAGCGGKIADRFLL-YSMDRYWHTRCLKCSCCQAQLGEIGTSCYTKSGMILCRNDYI 79
>FB|FBgn0026411 [details] [associations]
symbol:Lim1 species:7227 "Drosophila melanogaster"
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0007480 "imaginal disc-derived leg morphogenesis"
evidence=IMP] [GO:0007479 "leg disc proximal/distal pattern
formation" evidence=IMP] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IGI] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IMP] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005525
GO:GO:0005634 GO:GO:0045892 GO:GO:0045893 GO:GO:0046872
EMBL:AE014298 GO:GO:0043565 GO:GO:0008270 GO:GO:0003924
GO:GO:0006184 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0007480 GO:GO:0007479 FlyBase:FBgn0260444
HSSP:P06601 GeneTree:ENSGT00700000104177 eggNOG:NOG257130 KO:K09372
EMBL:AF181631 EMBL:AB034690 RefSeq:NP_572505.1 UniGene:Dm.3025
SMR:Q9V472 IntAct:Q9V472 MINT:MINT-756444 STRING:Q9V472
EnsemblMetazoa:FBtr0071279 GeneID:31813 KEGG:dme:Dmel_CG11354
UCSC:CG11354-RA CTD:31813 FlyBase:FBgn0026411 InParanoid:Q9V472
OMA:GARKMRG OrthoDB:EOG48W9H7 GenomeRNAi:31813 NextBio:775444
Uniprot:Q9V472
Length = 505
Score = 197 (74.4 bits), Expect = 7.0e-15, P = 7.0e-15
Identities = 31/77 (40%), Positives = 47/77 (61%)
Query: 76 CFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPG 135
CF R+ K YC+ D+ R +GTKC C D V + ++K++H+ CF C +C KQL G
Sbjct: 65 CFSRESKLYCRNDFFRRYGTKCSGCGQGIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTG 124
Query: 136 DEFALREDGLF-CKDDH 151
++ + +D F CKDD+
Sbjct: 125 EQLYVLDDNKFICKDDY 141
Score = 136 (52.9 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 24/55 (43%), Positives = 34/55 (61%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
C GC I D+++L V + WHA+C+RC EC Q L + C F R+ K YC+ D+
Sbjct: 27 CAGCNKPILDKFLLNVL-ERAWHASCVRCCECLQPLTDKC--FSRESKLYCRNDF 78
>RGD|1306174 [details] [associations]
symbol:Lhx6 "LIM homeobox 6" species:10116 "Rattus norvegicus"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0021799 "cerebral
cortex radially oriented cell migration" evidence=ISO] [GO:0021800
"cerebral cortex tangential migration" evidence=ISO] [GO:0021853
"cerebral cortex GABAergic interneuron migration" evidence=ISO]
[GO:0021877 "forebrain neuron fate commitment" evidence=ISO]
[GO:0021884 "forebrain neuron development" evidence=ISO]
[GO:0021895 "cerebral cortex neuron differentiation" evidence=ISO]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0048469 "cell maturation" evidence=ISO] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
RGD:1306174 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
IPI:IPI00948544 Ensembl:ENSRNOT00000068564 UCSC:RGD:1306174
Uniprot:D4A2X8
Length = 389
Score = 194 (73.4 bits), Expect = 7.7e-15, P = 7.7e-15
Identities = 32/85 (37%), Positives = 50/85 (58%)
Query: 70 LDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCG 129
L + +C++++ + YCK DY FGTKC +C D+V RA+ YH+ CF C C
Sbjct: 130 LRQQNSCYIKNKEIYCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCK 189
Query: 130 KQLVPGDEFALREDGLFCKDDHEGM 154
+QL G+EF L E+ + C+ ++ M
Sbjct: 190 RQLSTGEEFGLVEEKVLCRIHYDTM 214
Score = 140 (54.3 bits), Expect = 6.4e-09, P = 6.4e-09
Identities = 23/59 (38%), Positives = 38/59 (64%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
++C CG +I D+Y+L+V +L WH CL C+ C L + +C++++ + YCK DY S
Sbjct: 94 NICSSCGLEILDRYLLKVN-NLIWHVRCLECSVCRTSLRQQNSCYIKNKEIYCKMDYFS 151
>ZFIN|ZDB-GENE-081105-149 [details] [associations]
symbol:si:dkey-90l8.3 "si:dkey-90l8.3" species:7955
"Danio rerio" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
ZFIN:ZDB-GENE-081105-149 GO:GO:0046872 GO:GO:0008270
Gene3D:2.10.110.10 GeneTree:ENSGT00700000104177 EMBL:CU984584
IPI:IPI00501922 Ensembl:ENSDART00000074551 Uniprot:F1QMD9
Length = 165
Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 39/122 (31%), Positives = 58/122 (47%)
Query: 35 CAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYV-RLF 93
CA C + + F + + + S + Q + TC+ + G C+ DY+ RLF
Sbjct: 24 CAGCGGRISDRFLLFSMERYWHSRCLKCSCCQAQLGEIGSTCYSKSGMILCRTDYISRLF 83
Query: 94 GTK--CEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDH 151
G C C + + VMRA+ +YH++CF C C QLVPGD F +FC+ D
Sbjct: 84 GHTGACSACGQSIPASEMVMRAQGNVYHLKCFSCATCRNQLVPGDRFHYVNGTIFCEHDR 143
Query: 152 EG 153
G
Sbjct: 144 PG 145
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDE-NCTCFVRDGKTYCKRDYVS 63
C GCGG+I D+++L + + WH+ CL+C+ C L E TC+ + G C+ DY+S
Sbjct: 24 CAGCGGRISDRFLL-FSMERYWHSRCLKCSCCQAQLGEIGSTCYSKSGMILCRTDYIS 80
>FB|FBgn0036274 [details] [associations]
symbol:CG4328 species:7227 "Drosophila melanogaster"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0048813 "dendrite morphogenesis" evidence=IMP] [GO:0006911
"phagocytosis, engulfment" evidence=IMP] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0006911 EMBL:AE014296 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0048813
GeneTree:ENSGT00700000104050 EMBL:BT050501 RefSeq:NP_648567.2
UniGene:Dm.27132 SMR:Q9VTW3 IntAct:Q9VTW3 MINT:MINT-301655
EnsemblMetazoa:FBtr0301071 GeneID:39405 KEGG:dme:Dmel_CG4328
UCSC:CG4328-RA FlyBase:FBgn0036274 InParanoid:Q9VTW3 OMA:ETNKENC
OrthoDB:EOG4B8GVN GenomeRNAi:39405 NextBio:813480 Uniprot:Q9VTW3
Length = 544
Score = 195 (73.7 bits), Expect = 1.3e-14, P = 1.3e-14
Identities = 31/79 (39%), Positives = 50/79 (63%)
Query: 75 TCFVRDGKTYCKRDYVRLF-GTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLV 133
+C+ R+GK YC+ DY RL+ C C L ++ VMR ++H++CF CVVCG L
Sbjct: 236 SCYAREGKLYCRVDYERLYIRNHCLGCGLKIAADELVMRCHENVFHLKCFACVVCGALLK 295
Query: 134 PGDEFALREDGLFCKDDHE 152
G+++ +++ LFC+ D+E
Sbjct: 296 KGEQYVVKQGQLFCRFDYE 314
Score = 127 (49.8 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 31/100 (31%), Positives = 49/100 (49%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+LS C C I D+YI+RV + +H CL+C C L +C + R+GK YC+ DY
Sbjct: 195 QLSQCAHCCQPICDRYIMRVVEN-SFHEGCLKCTACSLHLVHSC--YAREGKLYCRVDY- 250
Query: 63 SSEKNQFLDENCT-CFVR-DGKTYCKRDYVRLFGTKCEKC 100
+ ++ +C C ++ R + +F KC C
Sbjct: 251 ---ERLYIRNHCLGCGLKIAADELVMRCHENVFHLKCFAC 287
>UNIPROTKB|H7C0H1 [details] [associations]
symbol:LHX2 "LIM/homeobox protein Lhx2" species:9606 "Homo
sapiens" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
EMBL:AC006450 HGNC:HGNC:6594 ChiTaRS:LHX2 OMA:CNENDAE EMBL:AL158052
ProteinModelPortal:H7C0H1 Ensembl:ENST00000446480 Uniprot:H7C0H1
Length = 412
Score = 192 (72.6 bits), Expect = 1.5e-14, P = 1.5e-14
Identities = 43/140 (30%), Positives = 64/140 (45%)
Query: 24 PDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKT 83
P + A L CA C + + D K + R E L+ TCF +DG
Sbjct: 41 PSISSDRAAL-CAGCGGKISDRYYLLAVD-KQWHMRCLKCCECKLNLESELTCFSKDGSI 98
Query: 84 YCKRDYV--------RLFGT-KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVP 134
YCK DY R F +C +C+L + VMRA++ +YH+ CF C C K L
Sbjct: 99 YCKEDYYSPSLHGPYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTT 158
Query: 135 GDEFALREDGLFCKDDHEGM 154
GD F +++ ++C+ E +
Sbjct: 159 GDHFGMKDSLVYCRLHFEAL 178
Score = 188 (71.2 bits), Expect = 4.2e-14, P = 4.2e-14
Identities = 32/61 (52%), Positives = 40/61 (65%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
R +LC GCGG+I D+Y L +A D +WH CL+C EC L+ TCF +DG YCK DY
Sbjct: 47 RAALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYY 105
Query: 63 S 63
S
Sbjct: 106 S 106
>UNIPROTKB|J9P8Y1 [details] [associations]
symbol:LHX6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 EMBL:AAEX03006908 EMBL:AAEX03006909
Ensembl:ENSCAFT00000045524 Uniprot:J9P8Y1
Length = 353
Score = 190 (71.9 bits), Expect = 1.5e-14, P = 1.5e-14
Identities = 31/85 (36%), Positives = 50/85 (58%)
Query: 70 LDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCG 129
L + +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C C
Sbjct: 133 LRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCK 192
Query: 130 KQLVPGDEFALREDGLFCKDDHEGM 154
+QL G+EF L E+ + C+ ++ M
Sbjct: 193 RQLSTGEEFGLVEEKVLCRIHYDTM 217
Score = 128 (50.1 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 21/59 (35%), Positives = 37/59 (62%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
++C CG +I D+ +L+V +L WH CL C+ C L + +C++++ + +CK DY S
Sbjct: 97 NICASCGLEILDRDLLKVN-NLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDYFS 154
>UNIPROTKB|F1SLQ9 [details] [associations]
symbol:LHX6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0048469 "cell
maturation" evidence=IEA] [GO:0021884 "forebrain neuron
development" evidence=IEA] [GO:0021877 "forebrain neuron fate
commitment" evidence=IEA] [GO:0021853 "cerebral cortex GABAergic
interneuron migration" evidence=IEA] [GO:0021800 "cerebral cortex
tangential migration" evidence=IEA] [GO:0021799 "cerebral cortex
radially oriented cell migration" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
Pfam:PF00046 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0021884 GO:GO:0021877 GO:GO:0021853
GO:GO:0021800 GeneTree:ENSGT00700000104050 GO:GO:0048469
GO:GO:0021799 OMA:PATDQVM EMBL:CU041257 Ensembl:ENSSSCT00000006081
Uniprot:F1SLQ9
Length = 362
Score = 190 (71.9 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 31/85 (36%), Positives = 50/85 (58%)
Query: 70 LDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCG 129
L + +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C C
Sbjct: 123 LRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCK 182
Query: 130 KQLVPGDEFALREDGLFCKDDHEGM 154
+QL G+EF L E+ + C+ ++ M
Sbjct: 183 RQLSTGEEFGLVEEKVLCRIHYDTM 207
Score = 136 (52.9 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 22/59 (37%), Positives = 38/59 (64%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
++C CG +I D+Y+L+V +L WH CL C+ C L + +C++++ + +CK DY S
Sbjct: 87 NICSSCGLEILDRYLLKVN-NLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDYFS 144
>UNIPROTKB|Q9UPM6 [details] [associations]
symbol:LHX6 "LIM/homeobox protein Lhx6" species:9606 "Homo
sapiens" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0021877 "forebrain
neuron fate commitment" evidence=IEA] [GO:0021884 "forebrain neuron
development" evidence=IEA] [GO:0021799 "cerebral cortex radially
oriented cell migration" evidence=ISS] [GO:0021800 "cerebral cortex
tangential migration" evidence=ISS] [GO:0021853 "cerebral cortex
GABAergic interneuron migration" evidence=ISS] [GO:0048469 "cell
maturation" evidence=ISS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=NAS] [GO:0005634
"nucleus" evidence=IDA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 EMBL:CH471090
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0021884 GO:GO:0021877 GO:GO:0021853
GO:GO:0021800 eggNOG:NOG264882 GO:GO:0048469 GO:GO:0021799
EMBL:AB031041 EMBL:AB031042 EMBL:AK126982 EMBL:AK289827
EMBL:AK297175 EMBL:AK299709 EMBL:AK313808 EMBL:AL162424
EMBL:AL136570 EMBL:BC103936 EMBL:BC103937 IPI:IPI00294419
IPI:IPI00513787 IPI:IPI00852614 IPI:IPI00853518 PIR:T46907
RefSeq:NP_001229262.1 RefSeq:NP_001229263.1 RefSeq:NP_001229264.1
RefSeq:NP_055183.2 RefSeq:NP_954629.2 UniGene:Hs.103137
ProteinModelPortal:Q9UPM6 SMR:Q9UPM6 STRING:Q9UPM6 DMDM:90185239
PRIDE:Q9UPM6 DNASU:26468 Ensembl:ENST00000340587
Ensembl:ENST00000373754 Ensembl:ENST00000373755
Ensembl:ENST00000394319 Ensembl:ENST00000541397
Ensembl:ENST00000559895 GeneID:26468 KEGG:hsa:26468 UCSC:uc004blx.4
UCSC:uc004bly.4 UCSC:uc010mvw.3 CTD:26468 GeneCards:GC09M124964
HGNC:HGNC:21735 HPA:HPA047854 MIM:608215 neXtProt:NX_Q9UPM6
PharmGKB:PA134949308 HOGENOM:HOG000038965 HOVERGEN:HBG006261
InParanoid:Q9UPM6 KO:K09375 OMA:PATDQVM OrthoDB:EOG4GTKD8
PhylomeDB:Q9UPM6 GenomeRNAi:26468 NextBio:48705 ArrayExpress:Q9UPM6
Bgee:Q9UPM6 CleanEx:HS_LHX6 Genevestigator:Q9UPM6
GermOnline:ENSG00000106852 Uniprot:Q9UPM6
Length = 363
Score = 190 (71.9 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 31/85 (36%), Positives = 50/85 (58%)
Query: 70 LDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCG 129
L + +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C C
Sbjct: 104 LRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCK 163
Query: 130 KQLVPGDEFALREDGLFCKDDHEGM 154
+QL G+EF L E+ + C+ ++ M
Sbjct: 164 RQLSTGEEFGLVEEKVLCRIHYDTM 188
Score = 136 (52.9 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 22/59 (37%), Positives = 38/59 (64%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
++C CG +I D+Y+L+V +L WH CL C+ C L + +C++++ + +CK DY S
Sbjct: 68 NICSSCGLEILDRYLLKVN-NLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDYFS 125
>UNIPROTKB|E2RA99 [details] [associations]
symbol:LHX6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 CTD:26468 KO:K09375 OMA:PATDQVM
EMBL:AAEX03006908 EMBL:AAEX03006909 RefSeq:XP_548475.3
Ensembl:ENSCAFT00000032295 GeneID:491354 KEGG:cfa:491354
Uniprot:E2RA99
Length = 363
Score = 190 (71.9 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 31/85 (36%), Positives = 50/85 (58%)
Query: 70 LDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCG 129
L + +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C C
Sbjct: 104 LRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCK 163
Query: 130 KQLVPGDEFALREDGLFCKDDHEGM 154
+QL G+EF L E+ + C+ ++ M
Sbjct: 164 RQLSTGEEFGLVEEKVLCRIHYDTM 188
Score = 128 (50.1 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 21/59 (35%), Positives = 37/59 (62%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
++C CG +I D+ +L+V +L WH CL C+ C L + +C++++ + +CK DY S
Sbjct: 68 NICASCGLEILDRDLLKVN-NLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDYFS 125
>UNIPROTKB|E1B8I6 [details] [associations]
symbol:LHX6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0048469 "cell
maturation" evidence=IEA] [GO:0021884 "forebrain neuron
development" evidence=IEA] [GO:0021877 "forebrain neuron fate
commitment" evidence=IEA] [GO:0021853 "cerebral cortex GABAergic
interneuron migration" evidence=IEA] [GO:0021800 "cerebral cortex
tangential migration" evidence=IEA] [GO:0021799 "cerebral cortex
radially oriented cell migration" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GO:GO:0021884 GO:GO:0021877 GO:GO:0021853 GO:GO:0021800
GeneTree:ENSGT00700000104050 GO:GO:0048469 GO:GO:0021799 CTD:26468
KO:K09375 OMA:PATDQVM EMBL:DAAA02032024 EMBL:DAAA02032025
IPI:IPI00716181 RefSeq:NP_001179777.1 UniGene:Bt.32055
Ensembl:ENSBTAT00000007266 GeneID:541261 KEGG:bta:541261
NextBio:20879100 Uniprot:E1B8I6
Length = 392
Score = 190 (71.9 bits), Expect = 2.2e-14, P = 2.2e-14
Identities = 31/85 (36%), Positives = 50/85 (58%)
Query: 70 LDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCG 129
L + +C++++ + +CK DY FGTKC +C D+V RA+ YH+ CF C C
Sbjct: 133 LRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCK 192
Query: 130 KQLVPGDEFALREDGLFCKDDHEGM 154
+QL G+EF L E+ + C+ ++ M
Sbjct: 193 RQLSTGEEFGLVEEKVLCRIHYDTM 217
Score = 136 (52.9 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 22/59 (37%), Positives = 38/59 (64%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
++C CG +I D+Y+L+V +L WH CL C+ C L + +C++++ + +CK DY S
Sbjct: 97 NICSSCGLEILDRYLLKVN-NLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDYFS 154
>UNIPROTKB|F1NLU0 [details] [associations]
symbol:F1NLU0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0021799
"cerebral cortex radially oriented cell migration" evidence=IEA]
[GO:0021800 "cerebral cortex tangential migration" evidence=IEA]
[GO:0021853 "cerebral cortex GABAergic interneuron migration"
evidence=IEA] [GO:0021877 "forebrain neuron fate commitment"
evidence=IEA] [GO:0021884 "forebrain neuron development"
evidence=IEA] [GO:0048469 "cell maturation" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GeneTree:ENSGT00700000104050 OMA:PATDQVM
EMBL:AADN02026365 EMBL:AADN02026363 EMBL:AADN02026364
IPI:IPI00603083 Ensembl:ENSGALT00000002057 Uniprot:F1NLU0
Length = 354
Score = 147 (56.8 bits), Expect = 2.7e-14, Sum P(2) = 2.7e-14
Identities = 25/62 (40%), Positives = 36/62 (58%)
Query: 93 FGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHE 152
FGTKC +C D+V RA+ YH+ CF C C +QL G+EF L E+ + C+ ++
Sbjct: 132 FGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 191
Query: 153 GM 154
M
Sbjct: 192 TM 193
Score = 62 (26.9 bits), Expect = 2.7e-14, Sum P(2) = 2.7e-14
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQ 40
++C CG +I D+Y+L+ + + WH+ L+C E +Q
Sbjct: 68 NVCSSCGLEILDRYLLK-SNNCIWHSG-LQCFEENQ 101
>UNIPROTKB|F1NL26 [details] [associations]
symbol:F1NL26 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 EMBL:AADN02026365 EMBL:AADN02026363
EMBL:AADN02026364 IPI:IPI01017195 Ensembl:ENSGALT00000038819
Uniprot:F1NL26
Length = 234
Score = 147 (56.8 bits), Expect = 3.2e-14, Sum P(2) = 3.2e-14
Identities = 25/62 (40%), Positives = 36/62 (58%)
Query: 93 FGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHE 152
FGTKC +C D+V RA+ YH+ CF C C +QL G+EF L E+ + C+ ++
Sbjct: 86 FGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 145
Query: 153 GM 154
M
Sbjct: 146 TM 147
Score = 49 (22.3 bits), Expect = 3.2e-14, Sum P(2) = 3.2e-14
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 5 SLCVGCGGQIHDQYILRV 22
++C CG +I D+Y+L+V
Sbjct: 27 NVCSSCGLEILDRYLLKV 44
>UNIPROTKB|Q679P3 [details] [associations]
symbol:PDLIM7 "PDZ and LIM domain protein 7" species:9031
"Gallus gallus" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0001503 "ossification" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0005856 "cytoskeleton"
evidence=IEA] [GO:0030018 "Z disc" evidence=IEA] Pfam:PF00595
Pfam:PF00412 InterPro:IPR001478 InterPro:IPR001781 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50106 SMART:SM00132 SMART:SM00228
GO:GO:0007275 GO:GO:0030154 GO:GO:0030018 GO:GO:0005856
GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10 SUPFAM:SSF50156
GO:GO:0001503 HOVERGEN:HBG051478 CTD:9260 EMBL:AY376690
EMBL:AJ720300 IPI:IPI00581834 RefSeq:NP_001005345.2
UniGene:Gga.48638 ProteinModelPortal:Q679P3 SMR:Q679P3
GeneID:416362 KEGG:gga:416362 NextBio:20819830 Uniprot:Q679P3
Length = 416
Score = 142 (55.0 bits), Expect = 4.4e-14, Sum P(2) = 4.4e-14
Identities = 26/76 (34%), Positives = 39/76 (51%)
Query: 73 NCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQL 132
N ++ +G+ YC+RDY ++FGTKC C+ D + A +H CF C +C L
Sbjct: 335 NRAFYMEEGQPYCERDYEKMFGTKCRGCDFKIDAGDRFLEALGFSWHDTCFVCAICQTNL 394
Query: 133 VPGDEFALREDGLFCK 148
G F ++D CK
Sbjct: 395 -EGKTFYSKKDKPLCK 409
Score = 127 (49.8 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 33/120 (27%), Positives = 50/120 (41%)
Query: 35 CAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFG 94
C +C++ + V G Y ++ + + LDE F G +C + Y +
Sbjct: 241 CYKCNKIIRGRY--LVALGHYYHPEEFTCCQCRKVLDEG-GFFEEKGSIFCPKCYDTRYA 297
Query: 95 TKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
C KC E VM A +HVQCF C C K + F + E +C+ D+E M
Sbjct: 298 PSCAKCKKKITGE--VMHALKMTWHVQCFTCAAC-KTPIRNRAFYMEEGQPYCERDYEKM 354
Score = 68 (29.0 bits), Expect = 4.4e-14, Sum P(2) = 4.4e-14
Identities = 18/59 (30%), Positives = 25/59 (42%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
R LC C I +Y+ VA +H C +C + LDE F G +C + Y
Sbjct: 237 RTPLCYKCNKIIRGRYL--VALGHYYHPEEFTCCQCRKVLDEG-GFFEEKGSIFCPKCY 292
>UNIPROTKB|F1S229 [details] [associations]
symbol:LMX1A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 EMBL:CU179728
Ensembl:ENSSSCT00000006937 Uniprot:F1S229
Length = 295
Score = 181 (68.8 bits), Expect = 7.2e-14, P = 7.2e-14
Identities = 32/62 (51%), Positives = 39/62 (62%)
Query: 91 RLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDD 150
RLF KC C +FVMRA+ +YH+ CFCC VC +QL GDEF L+E L CK D
Sbjct: 1 RLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGD 60
Query: 151 HE 152
+E
Sbjct: 61 YE 62
>UNIPROTKB|I3L863 [details] [associations]
symbol:LMX1A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0071542
"dopaminergic neuron differentiation" evidence=IEA] [GO:0045665
"negative regulation of neuron differentiation" evidence=IEA]
[GO:0030901 "midbrain development" evidence=IEA] [GO:0021953
"central nervous system neuron differentiation" evidence=IEA]
[GO:0021549 "cerebellum development" evidence=IEA] [GO:0021542
"dentate gyrus development" evidence=IEA] [GO:0007411 "axon
guidance" evidence=IEA] [GO:0001558 "regulation of cell growth"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0007411 GO:GO:0001558 GO:GO:0046872 GO:GO:0071542
GO:GO:0043565 GO:GO:0008270 GO:GO:0045665 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0021549
GO:GO:0030901 GeneTree:ENSGT00700000104050 GO:GO:0021542
GO:GO:0021953 OMA:GNAGMEG EMBL:CU179728 Ensembl:ENSSSCT00000032564
Uniprot:I3L863
Length = 296
Score = 181 (68.8 bits), Expect = 7.3e-14, P = 7.3e-14
Identities = 32/62 (51%), Positives = 39/62 (62%)
Query: 91 RLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDD 150
RLF KC C +FVMRA+ +YH+ CFCC VC +QL GDEF L+E L CK D
Sbjct: 1 RLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGD 60
Query: 151 HE 152
+E
Sbjct: 61 YE 62
>WB|WBGene00002987 [details] [associations]
symbol:lim-4 species:6239 "Caenorhabditis elegans"
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA;ISS] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0001708 "cell fate specification"
evidence=IMP] [GO:0005623 "cell" evidence=IDA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
Pfam:PF00046 PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071
SMART:SM00132 SMART:SM00389 GO:GO:0005634 GO:GO:0001708
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0005623
GeneTree:ENSGT00700000104050 EMBL:FO081410 HSSP:P50480 EMBL:U72348
PIR:T27637 RefSeq:NP_508669.1 UniGene:Cel.665
ProteinModelPortal:G5EEA1 SMR:G5EEA1 EnsemblMetazoa:ZC64.4
GeneID:180672 KEGG:cel:CELE_ZC64.4 CTD:180672 WormBase:ZC64.4
OMA:ARQKKWH NextBio:910388 Uniprot:G5EEA1
Length = 355
Score = 182 (69.1 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 47/141 (33%), Positives = 65/141 (46%)
Query: 20 LRVAPDLEWHAACLRCAEC-HQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFV 78
+R+ PD A + C +C HQ D+ DG+ Y + S L C F
Sbjct: 87 IRIKPD----AVIVICTQCQHQIQDKFFLSI--DGRNYHENCLQCSTCENPLSNKC--FY 138
Query: 79 RDGKTYCKRDYVRL-----------FGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVV 127
+D YCK Y R G KC C+ + D+V RA+N +YH+ CF C
Sbjct: 139 KDKTFYCKGCYFRTHVTSTASSCRELGPKCASCDRTIQATDWVRRARNYVYHLACFSCNQ 198
Query: 128 CGKQLVPGDEFALREDGLFCK 148
C +QL G+E+AL+E L CK
Sbjct: 199 CKRQLSTGEEYALQEGNLLCK 219
>FB|FBgn0052105 [details] [associations]
symbol:CG32105 species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=ISS] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 EMBL:AE014296 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GeneTree:ENSGT00700000104050
eggNOG:NOG243427 HSSP:P50480 EMBL:BT003467 RefSeq:NP_729801.1
UniGene:Dm.15353 SMR:Q9VTW5 IntAct:Q9VTW5 MINT:MINT-307196
EnsemblMetazoa:FBtr0075953 GeneID:39406 KEGG:dme:Dmel_CG32105
UCSC:CG32105-RB FlyBase:FBgn0052105 InParanoid:Q9VTW5 OMA:CCHAILP
OrthoDB:EOG4BCC40 GenomeRNAi:39406 NextBio:813485 Uniprot:Q9VTW5
Length = 640
Score = 186 (70.5 bits), Expect = 1.7e-13, P = 1.7e-13
Identities = 34/74 (45%), Positives = 44/74 (59%)
Query: 75 TCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRA-KNKIYHVQCFCCVVCGKQLV 133
TC+VR+ K YCK DY RLFG KC C ++ VMR N ++H+ CF C C L
Sbjct: 312 TCYVRNSKLYCKMDYDRLFGVKCSSCCHAILPQELVMRPIPNFVFHLPCFVCYACRLPLQ 371
Query: 134 PGDEFALREDGLFC 147
G++F LR+ LFC
Sbjct: 372 KGEQFMLRDGQLFC 385
Score = 156 (60.0 bits), Expect = 2.8e-10, P = 2.8e-10
Identities = 27/61 (44%), Positives = 36/61 (59%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
++ LC GCG +IHD++++ V D WH CL C C L TC+VR+ K YCK D
Sbjct: 269 EKNFELCEGCGQKIHDRFLMNVG-DANWHEQCLACCYCGMQLHH--TCYVRNSKLYCKMD 325
Query: 61 Y 61
Y
Sbjct: 326 Y 326
>WB|WBGene00003000 [details] [associations]
symbol:lin-11 species:6239 "Caenorhabditis elegans"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0040026 "positive
regulation of vulval development" evidence=IMP] [GO:0001708 "cell
fate specification" evidence=IMP] [GO:0007413 "axonal
fasciculation" evidence=IMP] [GO:0018991 "oviposition"
evidence=IMP] [GO:0045595 "regulation of cell differentiation"
evidence=IMP] [GO:0030334 "regulation of cell migration"
evidence=IMP] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0001708 GO:GO:0018991
GO:GO:0040010 GO:GO:0045595 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0030334 Gene3D:2.10.110.10 GO:GO:0007413 GO:GO:0040026
GeneTree:ENSGT00700000104177 eggNOG:NOG257130 HOGENOM:HOG000231630
KO:K09372 EMBL:Z80221 EMBL:X54355 PIR:T27509 RefSeq:NP_492696.1
ProteinModelPortal:P20154 SMR:P20154 STRING:P20154
EnsemblMetazoa:ZC247.3 GeneID:172893 KEGG:cel:CELE_ZC247.3
UCSC:ZC247.3 CTD:172893 WormBase:ZC247.3 InParanoid:P20154
OMA:NDQQFYP NextBio:877423 Uniprot:P20154
Length = 405
Score = 182 (69.1 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 32/83 (38%), Positives = 49/83 (59%)
Query: 75 TCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVP 134
TCF RDG CK D+ R + +C C+ ++ED V RA++K++H++CF C VC + L
Sbjct: 105 TCFSRDGLILCKTDFSRRYSQRCAGCDGKLEKEDLVRRARDKVFHIRCFQCSVCQRLLDT 164
Query: 135 GDEFALREDGLF-CKDDHEGMDK 156
GD+ + E F C+ D + K
Sbjct: 165 GDQLYIMEGNRFVCQSDFQTATK 187
Score = 128 (50.1 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 34/102 (33%), Positives = 49/102 (48%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C C I D+Y+ V WH +CLRC +C + + TCF RDG CK D+
Sbjct: 68 CAACAQPILDRYVFTVLGKC-WHQSCLRCCDCRAPM--SMTCFSRDGLILCKTDF----- 119
Query: 67 NQFLDENCT-CFVRDGKTYCKRDYVR-----LFGTKCEKCNL 102
++ + C C DGK K D VR +F +C +C++
Sbjct: 120 SRRYSQRCAGC---DGKLE-KEDLVRRARDKVFHIRCFQCSV 157
Score = 108 (43.1 bits), Expect = 0.00035, P = 0.00035
Identities = 20/67 (29%), Positives = 37/67 (55%)
Query: 2 RRLSL-CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTY-CKR 59
RR S C GC G++ + ++R A D +H C +C+ C + LD ++ +G + C+
Sbjct: 121 RRYSQRCAGCDGKLEKEDLVRRARDKVFHIRCFQCSVCQRLLDTGDQLYIMEGNRFVCQS 180
Query: 60 DYVSSEK 66
D+ ++ K
Sbjct: 181 DFQTATK 187
>RGD|621166 [details] [associations]
symbol:Lmo1 "LIM domain only 1" species:10116 "Rattus norvegicus"
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] Pfam:PF00412 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132 RGD:621166
GO:GO:0006355 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:2.10.110.10 eggNOG:NOG316748 HOGENOM:HOG000232175
HOVERGEN:HBG054231 OrthoDB:EOG405S2K EMBL:AF353304 IPI:IPI00197708
UniGene:Rn.25503 ProteinModelPortal:Q99MB5 SMR:Q99MB5 STRING:Q99MB5
UCSC:RGD:621166 InParanoid:Q99MB5 Genevestigator:Q99MB5
GermOnline:ENSRNOG00000008041 Uniprot:Q99MB5
Length = 145
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 31/85 (36%), Positives = 51/85 (60%)
Query: 75 TCFVRDGKTYCKRDYVRLFGT--KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQL 132
T + + C+RDY+RLFGT C C+ + VMRA++ +YH+ CF C +C ++
Sbjct: 53 TLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRF 112
Query: 133 VPGDEFALREDGLFCKDDHE-GMDK 156
GD+F L+ + + C+ D+E G+ K
Sbjct: 113 CVGDKFFLKNNMILCQTDYEEGLMK 137
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDE-NCTCFVRDGKTYCKRDYV 62
C GC +I D+Y+L+ A D WH CL+CA C L E T + + C+RDY+
Sbjct: 13 CAGCNRKIKDRYLLK-ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYL 68
>UNIPROTKB|Q99MB5 [details] [associations]
symbol:Lmo3 "LIM domain only protein 3" species:10116
"Rattus norvegicus" [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023
SMART:SM00132 RGD:621166 GO:GO:0006355 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 Gene3D:2.10.110.10 eggNOG:NOG316748
HOGENOM:HOG000232175 HOVERGEN:HBG054231 OrthoDB:EOG405S2K
EMBL:AF353304 IPI:IPI00197708 UniGene:Rn.25503
ProteinModelPortal:Q99MB5 SMR:Q99MB5 STRING:Q99MB5 UCSC:RGD:621166
InParanoid:Q99MB5 Genevestigator:Q99MB5
GermOnline:ENSRNOG00000008041 Uniprot:Q99MB5
Length = 145
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 31/85 (36%), Positives = 51/85 (60%)
Query: 75 TCFVRDGKTYCKRDYVRLFGT--KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQL 132
T + + C+RDY+RLFGT C C+ + VMRA++ +YH+ CF C +C ++
Sbjct: 53 TLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRF 112
Query: 133 VPGDEFALREDGLFCKDDHE-GMDK 156
GD+F L+ + + C+ D+E G+ K
Sbjct: 113 CVGDKFFLKNNMILCQTDYEEGLMK 137
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDE-NCTCFVRDGKTYCKRDYV 62
C GC +I D+Y+L+ A D WH CL+CA C L E T + + C+RDY+
Sbjct: 13 CAGCNRKIKDRYLLK-ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYL 68
>UNIPROTKB|F1N4F7 [details] [associations]
symbol:LMX1B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0071542
"dopaminergic neuron differentiation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0035265 "organ growth" evidence=IEA]
[GO:0035108 "limb morphogenesis" evidence=IEA] [GO:0030901
"midbrain development" evidence=IEA] [GO:0030199 "collagen fibril
organization" evidence=IEA] [GO:0021954 "central nervous system
neuron development" evidence=IEA] [GO:0021587 "cerebellum
morphogenesis" evidence=IEA] [GO:0009953 "dorsal/ventral pattern
formation" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IEA] [GO:0008219 "cell death" evidence=IEA] [GO:0002930
"trabecular meshwork development" evidence=IEA] [GO:0001764 "neuron
migration" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0001764 GO:GO:0046872 GO:GO:0008283 GO:GO:0008219
GO:GO:0071542 GO:GO:0043565 GO:GO:0008270 GO:GO:0030199
GO:GO:0045944 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0043010 Gene3D:2.10.110.10 GO:GO:0030901 GO:GO:0035265
GO:GO:0009953 GO:GO:0021954 GO:GO:0035108
GeneTree:ENSGT00700000104050 GO:GO:0021587 OMA:NRMEGMM
EMBL:DAAA02032139 IPI:IPI00694069 Ensembl:ENSBTAT00000038767
Uniprot:F1N4F7
Length = 294
Score = 176 (67.0 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 32/62 (51%), Positives = 38/62 (61%)
Query: 91 RLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDD 150
RLF KC C +FVMRA +YH+ CFCC VC +QL GDEF L+E L CK D
Sbjct: 1 RLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGD 60
Query: 151 HE 152
+E
Sbjct: 61 YE 62
>UNIPROTKB|F1RS26 [details] [associations]
symbol:LMX1B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0071542
"dopaminergic neuron differentiation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0035265 "organ growth" evidence=IEA]
[GO:0035108 "limb morphogenesis" evidence=IEA] [GO:0030901
"midbrain development" evidence=IEA] [GO:0030199 "collagen fibril
organization" evidence=IEA] [GO:0021954 "central nervous system
neuron development" evidence=IEA] [GO:0021587 "cerebellum
morphogenesis" evidence=IEA] [GO:0009953 "dorsal/ventral pattern
formation" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IEA] [GO:0008219 "cell death" evidence=IEA] [GO:0002930
"trabecular meshwork development" evidence=IEA] [GO:0001764 "neuron
migration" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0001764 GO:GO:0046872 GO:GO:0008283 GO:GO:0008219
GO:GO:0071542 GO:GO:0043565 GO:GO:0008270 GO:GO:0030199
GO:GO:0045944 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0043010 Gene3D:2.10.110.10 GO:GO:0030901 GO:GO:0035265
GO:GO:0009953 GO:GO:0021954 GO:GO:0035108
GeneTree:ENSGT00700000104050 GO:GO:0021587 OMA:NRMEGMM
EMBL:CU062602 Ensembl:ENSSSCT00000006164 Uniprot:F1RS26
Length = 294
Score = 176 (67.0 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 32/62 (51%), Positives = 38/62 (61%)
Query: 91 RLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDD 150
RLF KC C +FVMRA +YH+ CFCC VC +QL GDEF L+E L CK D
Sbjct: 1 RLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGD 60
Query: 151 HE 152
+E
Sbjct: 61 YE 62
>UNIPROTKB|F1NBH3 [details] [associations]
symbol:LMO3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008270 "zinc ion binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 OMA:HTEIGIY EMBL:AADN02006566
EMBL:AADN02006567 EMBL:AADN02006568 IPI:IPI00590236
Ensembl:ENSGALT00000009596 Uniprot:F1NBH3
Length = 147
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 31/85 (36%), Positives = 50/85 (58%)
Query: 75 TCFVRDGKTYCKRDYVRLFGT--KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQL 132
T + + C+RDY+RLFG C C+ + VMRAK+ +YH+ CF C +C ++
Sbjct: 55 TLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRF 114
Query: 133 VPGDEFALREDGLFCKDDHE-GMDK 156
GD+F L+ + + C+ D+E G+ K
Sbjct: 115 CVGDKFFLKNNMILCQTDYEEGLMK 139
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDE-NCTCFVRDGKTYCKRDYV 62
C GC +I D+Y+L+ A D WH CL+CA C L E T + + C+RDY+
Sbjct: 15 CAGCNRKIKDRYLLK-ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYL 70
>UNIPROTKB|Q2KIA3 [details] [associations]
symbol:LMO3 "LIM domain only protein 3" species:9913 "Bos
taurus" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023
SMART:SM00132 GO:GO:0006355 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 Gene3D:2.10.110.10 GeneTree:ENSGT00680000099670
EMBL:BC112712 IPI:IPI00722914 RefSeq:NP_001039802.1
UniGene:Bt.97510 ProteinModelPortal:Q2KIA3 SMR:Q2KIA3
Ensembl:ENSBTAT00000043044 GeneID:532870 KEGG:bta:532870 CTD:55885
eggNOG:NOG316748 HOGENOM:HOG000232175 HOVERGEN:HBG054231
InParanoid:Q2KIA3 OMA:HTEIGIY OrthoDB:EOG405S2K NextBio:20875832
Uniprot:Q2KIA3
Length = 145
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 31/85 (36%), Positives = 50/85 (58%)
Query: 75 TCFVRDGKTYCKRDYVRLFGT--KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQL 132
T + + C+RDY+RLFG C C+ + VMRAK+ +YH+ CF C +C ++
Sbjct: 53 TLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRF 112
Query: 133 VPGDEFALREDGLFCKDDHE-GMDK 156
GD+F L+ + + C+ D+E G+ K
Sbjct: 113 CVGDKFFLKNNMILCQTDYEEGLMK 137
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDE-NCTCFVRDGKTYCKRDYV 62
C GC +I D+Y+L+ A D WH CL+CA C L E T + + C+RDY+
Sbjct: 13 CAGCNRKIKDRYLLK-ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYL 68
>UNIPROTKB|E2RHK8 [details] [associations]
symbol:LMO3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023
SMART:SM00132 GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 CTD:55885 EMBL:AAEX03015233
RefSeq:XP_003433617.1 ProteinModelPortal:E2RHK8
Ensembl:ENSCAFT00000020038 GeneID:486662 KEGG:cfa:486662
Uniprot:E2RHK8
Length = 156
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 31/85 (36%), Positives = 50/85 (58%)
Query: 75 TCFVRDGKTYCKRDYVRLFGT--KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQL 132
T + + C+RDY+RLFG C C+ + VMRAK+ +YH+ CF C +C ++
Sbjct: 64 TLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRF 123
Query: 133 VPGDEFALREDGLFCKDDHE-GMDK 156
GD+F L+ + + C+ D+E G+ K
Sbjct: 124 CVGDKFFLKNNMILCQTDYEEGLMK 148
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDE-NCTCFVRDGKTYCKRDYV 62
C GC +I D+Y+L+ A D WH CL+CA C L E T + + C+RDY+
Sbjct: 24 CAGCNRKIKDRYLLK-ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYL 79
>UNIPROTKB|J9NZN8 [details] [associations]
symbol:LMO3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023
SMART:SM00132 GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 CTD:55885 OMA:HTEIGIY
EMBL:AAEX03015233 GeneID:486662 KEGG:cfa:486662 RefSeq:XP_866550.2
Ensembl:ENSCAFT00000044444 Uniprot:J9NZN8
Length = 163
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 31/85 (36%), Positives = 50/85 (58%)
Query: 75 TCFVRDGKTYCKRDYVRLFGT--KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQL 132
T + + C+RDY+RLFG C C+ + VMRAK+ +YH+ CF C +C ++
Sbjct: 71 TLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRF 130
Query: 133 VPGDEFALREDGLFCKDDHE-GMDK 156
GD+F L+ + + C+ D+E G+ K
Sbjct: 131 CVGDKFFLKNNMILCQTDYEEGLMK 155
Score = 115 (45.5 bits), Expect = 8.1e-07, P = 8.1e-07
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDE-NCTCFVRDGKTYCKRDYV 62
C GC +I D+Y+L+ A D WH CL+CA C L E T + + C+RDY+
Sbjct: 31 CAGCNRKIKDRYLLK-ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYL 86
>UNIPROTKB|J9P4K0 [details] [associations]
symbol:LMO3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023
SMART:SM00132 GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 CTD:55885 EMBL:AAEX03015233
GeneID:486662 KEGG:cfa:486662 RefSeq:XP_866536.1
ProteinModelPortal:J9P4K0 Ensembl:ENSCAFT00000048736 Uniprot:J9P4K0
Length = 145
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 31/85 (36%), Positives = 50/85 (58%)
Query: 75 TCFVRDGKTYCKRDYVRLFGT--KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQL 132
T + + C+RDY+RLFG C C+ + VMRAK+ +YH+ CF C +C ++
Sbjct: 53 TLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRF 112
Query: 133 VPGDEFALREDGLFCKDDHE-GMDK 156
GD+F L+ + + C+ D+E G+ K
Sbjct: 113 CVGDKFFLKNNMILCQTDYEEGLMK 137
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDE-NCTCFVRDGKTYCKRDYV 62
C GC +I D+Y+L+ A D WH CL+CA C L E T + + C+RDY+
Sbjct: 13 CAGCNRKIKDRYLLK-ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYL 68
>UNIPROTKB|B4DG90 [details] [associations]
symbol:LMO3 "LIM domain only protein 3" species:9606 "Homo
sapiens" [GO:0008270 "zinc ion binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10 CTD:55885
HOGENOM:HOG000232175 HOVERGEN:HBG054231 EMBL:AC007529 EMBL:AC007552
RefSeq:NP_001001395.1 UniGene:Hs.504908 DNASU:55885 GeneID:55885
KEGG:hsa:55885 HGNC:HGNC:6643 GenomeRNAi:55885 NextBio:61212
EMBL:AK294474 EMBL:AK316021 IPI:IPI00910185 RefSeq:NP_001230541.1
SMR:B4DG90 STRING:B4DG90 Ensembl:ENST00000541295 UCSC:uc010shy.2
Uniprot:B4DG90
Length = 163
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 31/85 (36%), Positives = 50/85 (58%)
Query: 75 TCFVRDGKTYCKRDYVRLFGT--KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQL 132
T + + C+RDY+RLFG C C+ + VMRAK+ +YH+ CF C +C ++
Sbjct: 71 TLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRF 130
Query: 133 VPGDEFALREDGLFCKDDHE-GMDK 156
GD+F L+ + + C+ D+E G+ K
Sbjct: 131 CVGDKFFLKNNMILCQTDYEEGLMK 155
Score = 115 (45.5 bits), Expect = 8.1e-07, P = 8.1e-07
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDE-NCTCFVRDGKTYCKRDYV 62
C GC +I D+Y+L+ A D WH CL+CA C L E T + + C+RDY+
Sbjct: 31 CAGCNRKIKDRYLLK-ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYL 86
>UNIPROTKB|Q8TAP4 [details] [associations]
symbol:LMO3 "LIM domain only protein 3" species:9606 "Homo
sapiens" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023
SMART:SM00132 GO:GO:0006355 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 Gene3D:2.10.110.10 EMBL:CH471094 CTD:55885
eggNOG:NOG316748 HOGENOM:HOG000232175 HOVERGEN:HBG054231
OMA:HTEIGIY OrthoDB:EOG405S2K EMBL:AB044745 EMBL:AB044746
EMBL:AK095595 EMBL:AK294909 EMBL:AC007529 EMBL:AC007552
EMBL:BC026311 EMBL:BC050085 IPI:IPI00744307 RefSeq:NP_001001395.1
RefSeq:NP_001230538.1 RefSeq:NP_001230539.1 RefSeq:NP_001230540.1
RefSeq:NP_001230542.1 RefSeq:NP_061110.2 UniGene:Hs.504908
ProteinModelPortal:Q8TAP4 SMR:Q8TAP4 IntAct:Q8TAP4
MINT:MINT-2874669 STRING:Q8TAP4 PhosphoSite:Q8TAP4 DMDM:34098603
PRIDE:Q8TAP4 DNASU:55885 Ensembl:ENST00000261169
Ensembl:ENST00000320122 Ensembl:ENST00000354662
Ensembl:ENST00000441439 Ensembl:ENST00000447609
Ensembl:ENST00000534946 Ensembl:ENST00000535535
Ensembl:ENST00000537304 Ensembl:ENST00000540445
Ensembl:ENST00000540848 Ensembl:ENST00000541846 GeneID:55885
KEGG:hsa:55885 UCSC:uc001rdk.2 GeneCards:GC12M016701 HGNC:HGNC:6643
MIM:180386 neXtProt:NX_Q8TAP4 PharmGKB:PA30409 InParanoid:Q8TAP4
PhylomeDB:Q8TAP4 GenomeRNAi:55885 NextBio:61212 ArrayExpress:Q8TAP4
Bgee:Q8TAP4 CleanEx:HS_LMO3 Genevestigator:Q8TAP4
GermOnline:ENSG00000048540 Uniprot:Q8TAP4
Length = 145
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 31/85 (36%), Positives = 50/85 (58%)
Query: 75 TCFVRDGKTYCKRDYVRLFGT--KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQL 132
T + + C+RDY+RLFG C C+ + VMRAK+ +YH+ CF C +C ++
Sbjct: 53 TLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRF 112
Query: 133 VPGDEFALREDGLFCKDDHE-GMDK 156
GD+F L+ + + C+ D+E G+ K
Sbjct: 113 CVGDKFFLKNNMILCQTDYEEGLMK 137
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDE-NCTCFVRDGKTYCKRDYV 62
C GC +I D+Y+L+ A D WH CL+CA C L E T + + C+RDY+
Sbjct: 13 CAGCNRKIKDRYLLK-ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYL 68
>UNIPROTKB|A9ED84 [details] [associations]
symbol:LMO3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 CTD:55885 HOVERGEN:HBG054231
OMA:HTEIGIY OrthoDB:EOG405S2K EMBL:CU915363 EMBL:AB304400
RefSeq:NP_001106155.1 UniGene:Ssc.8086 SMR:A9ED84
Ensembl:ENSSSCT00000000642 GeneID:100127154 KEGG:ssc:100127154
eggNOG:NOG315878 Uniprot:A9ED84
Length = 145
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 31/85 (36%), Positives = 50/85 (58%)
Query: 75 TCFVRDGKTYCKRDYVRLFGT--KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQL 132
T + + C+RDY+RLFG C C+ + VMRAK+ +YH+ CF C +C ++
Sbjct: 53 TLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRF 112
Query: 133 VPGDEFALREDGLFCKDDHE-GMDK 156
GD+F L+ + + C+ D+E G+ K
Sbjct: 113 CVGDKFFLKNNMILCQTDYEEGLMK 137
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDE-NCTCFVRDGKTYCKRDYV 62
C GC +I D+Y+L+ A D WH CL+CA C L E T + + C+RDY+
Sbjct: 13 CAGCNRKIKDRYLLK-ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYL 68
>MGI|MGI:102810 [details] [associations]
symbol:Lmo3 "LIM domain only 3" species:10090 "Mus musculus"
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
MGI:MGI:102810 GO:GO:0006355 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 Gene3D:2.10.110.10 GeneTree:ENSGT00680000099670
CTD:55885 eggNOG:NOG316748 HOVERGEN:HBG054231 OrthoDB:EOG405S2K
EMBL:AK034177 EMBL:BC057086 IPI:IPI00406211 RefSeq:NP_997105.1
UniGene:Mm.490545 ProteinModelPortal:Q8BZL8 SMR:Q8BZL8
STRING:Q8BZL8 PhosphoSite:Q8BZL8 PRIDE:Q8BZL8
Ensembl:ENSMUST00000161450 Ensembl:ENSMUST00000162772
Ensembl:ENSMUST00000163024 GeneID:109593 KEGG:mmu:109593
UCSC:uc009enl.1 InParanoid:Q8BZL8 NextBio:362405 Bgee:Q8BZL8
CleanEx:MM_LMO3 Genevestigator:Q8BZL8 GermOnline:ENSMUSG00000030226
Uniprot:Q8BZL8
Length = 145
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 31/85 (36%), Positives = 50/85 (58%)
Query: 75 TCFVRDGKTYCKRDYVRLFGT--KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQL 132
T + + C+RDY+RLFG C C+ + VMRAK+ +YH+ CF C +C ++
Sbjct: 53 TLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRF 112
Query: 133 VPGDEFALREDGLFCKDDHE-GMDK 156
GD+F L+ + + C+ D+E G+ K
Sbjct: 113 CVGDKFFLKNNMILCQTDYEEGLMK 137
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDE-NCTCFVRDGKTYCKRDYV 62
C GC +I D+Y+L+ A D WH CL+CA C L E T + + C+RDY+
Sbjct: 13 CAGCNRKIKDRYLLK-ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYL 68
>RGD|1561357 [details] [associations]
symbol:RGD1561357 "similar to LIM domain only 3" species:10116
"Rattus norvegicus" [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023
SMART:SM00132 RGD:1561357 GO:GO:0046872 GO:GO:0008270
Gene3D:2.10.110.10 OMA:HTEIGIY IPI:IPI00480651
RefSeq:XP_003749911.1 ProteinModelPortal:F2Z3R1 SMR:F2Z3R1
Ensembl:ENSRNOT00000010623 GeneID:497798 KEGG:rno:497798 CTD:497798
Uniprot:F2Z3R1
Length = 145
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 31/85 (36%), Positives = 50/85 (58%)
Query: 75 TCFVRDGKTYCKRDYVRLFGT--KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQL 132
T + + C+RDY+RLFG C C+ + VMRAK+ +YH+ CF C +C ++
Sbjct: 53 TLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRF 112
Query: 133 VPGDEFALREDGLFCKDDHE-GMDK 156
GD+F L+ + + C+ D+E G+ K
Sbjct: 113 CVGDKFFLKNNMILCQTDYEEGLMK 137
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDE-NCTCFVRDGKTYCKRDYV 62
C GC +I D+Y+L+ A D WH CL+CA C L E T + + C+RDY+
Sbjct: 13 CAGCNRKIKDRYLLK-ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYL 68
>ZFIN|ZDB-GENE-040121-6 [details] [associations]
symbol:ldb3a "LIM-domain binding factor 3a"
species:7955 "Danio rerio" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0007507 "heart development" evidence=IMP]
[GO:0001756 "somitogenesis" evidence=IMP] [GO:0046872 "metal ion
binding" evidence=IEA] Pfam:PF00595 Pfam:PF00412 InterPro:IPR001478
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50106
SMART:SM00132 SMART:SM00228 ZFIN:ZDB-GENE-040121-6 GO:GO:0007507
GO:GO:0046872 GO:GO:0008270 GO:GO:0001756 Gene3D:2.10.110.10
SUPFAM:SSF50156 HOGENOM:HOG000220936 HOVERGEN:HBG051478
EMBL:DQ012157 IPI:IPI00770690 UniGene:Dr.76474
ProteinModelPortal:Q4ZGL7 SMR:Q4ZGL7 PRIDE:Q4ZGL7 InParanoid:Q4ZGL7
ArrayExpress:Q4ZGL7 Bgee:Q4ZGL7 Uniprot:Q4ZGL7
Length = 649
Score = 140 (54.3 bits), Expect = 4.7e-13, Sum P(2) = 4.7e-13
Identities = 27/76 (35%), Positives = 38/76 (50%)
Query: 73 NCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQL 132
N + DG+ YC++DY+ LF TKC C+ + D + A +H CF C VC L
Sbjct: 567 NSLFHMEDGEPYCEKDYIALFSTKCHGCDFPVEAGDKFIEALGHTWHDTCFVCAVCHVNL 626
Query: 133 VPGDEFALREDGLFCK 148
G F ++D CK
Sbjct: 627 -EGQPFYSKKDKPLCK 641
Score = 113 (44.8 bits), Expect = 0.00012, P = 0.00012
Identities = 25/77 (32%), Positives = 35/77 (45%)
Query: 77 FVRD-GKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPG 135
FV + YC+ Y F C +C+ E VM A + +H CF C CGK G
Sbjct: 511 FVEEQNNVYCENCYEEFFAPTCARCSTKIMGE--VMHALRQTWHTTCFVCAACGKPF--G 566
Query: 136 DEFALREDGL-FCKDDH 151
+ EDG +C+ D+
Sbjct: 567 NSLFHMEDGEPYCEKDY 583
Score = 66 (28.3 bits), Expect = 4.7e-13, Sum P(2) = 4.7e-13
Identities = 18/60 (30%), Positives = 23/60 (38%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRD-GKTYCKRDY 61
R LC C I ++ VA WH C CH L + FV + YC+ Y
Sbjct: 469 RTPLCATCNNIIRGPFL--VALGRSWHPEEFNCHYCHTSLAD--VSFVEEQNNVYCENCY 524
>UNIPROTKB|F1NBH5 [details] [associations]
symbol:LOC100858792 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023
SMART:SM00132 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0045944 GO:GO:0000122 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 OMA:GSFETQV EMBL:AADN02030560
IPI:IPI00812377 Ensembl:ENSGALT00000009595 Uniprot:F1NBH5
Length = 156
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 75 TCFVRDGKTYCKRDYVRLFGT--KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQL 132
T + + C+RDY+RLFGT C C+ + VMRA++ +YH+ CF C +C ++
Sbjct: 64 TLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRF 123
Query: 133 VPGDEFALREDGLFCKDDHE 152
GD+F L+ + + C+ D+E
Sbjct: 124 CVGDKFFLKNNMILCQMDYE 143
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDE-NCTCFVRDGKTYCKRDYV 62
C GC +I D+Y+L+ A D WH CL+CA C L E T + + C+RDY+
Sbjct: 24 CAGCNRKIKDRYLLK-ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYL 79
>UNIPROTKB|Q0P5B3 [details] [associations]
symbol:LMO1 "Rhombotin-1" species:9913 "Bos taurus"
[GO:0005634 "nucleus" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132 GO:GO:0005634
GO:GO:0046872 GO:GO:0008270 GO:GO:0045944 GO:GO:0000122
Gene3D:2.10.110.10 GeneTree:ENSGT00680000099670
HOGENOM:HOG000232175 HOVERGEN:HBG054231 OrthoDB:EOG405S2K
EMBL:BC120273 IPI:IPI00699115 RefSeq:NP_001069363.1
ProteinModelPortal:Q0P5B3 SMR:Q0P5B3 STRING:Q0P5B3
Ensembl:ENSBTAT00000045558 GeneID:527152 KEGG:bta:527152 CTD:4004
eggNOG:NOG288849 InParanoid:Q0P5B3 OMA:GSFETQV NextBio:20874528
Uniprot:Q0P5B3
Length = 156
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 75 TCFVRDGKTYCKRDYVRLFGT--KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQL 132
T + + C+RDY+RLFGT C C+ + VMRA++ +YH+ CF C +C ++
Sbjct: 64 TLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRF 123
Query: 133 VPGDEFALREDGLFCKDDHE 152
GD+F L+ + + C+ D+E
Sbjct: 124 CVGDKFFLKNNMILCQMDYE 143
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDE-NCTCFVRDGKTYCKRDYV 62
C GC +I D+Y+L+ A D WH CL+CA C L E T + + C+RDY+
Sbjct: 24 CAGCNRKIKDRYLLK-ALDQYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYL 79
>UNIPROTKB|E2RLZ2 [details] [associations]
symbol:LMO1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0045944
GO:GO:0000122 Gene3D:2.10.110.10 GeneTree:ENSGT00680000099670
CTD:4004 OMA:GSFETQV EMBL:AAEX03012888 RefSeq:XP_851199.1
ProteinModelPortal:E2RLZ2 Ensembl:ENSCAFT00000011097 GeneID:610473
KEGG:cfa:610473 Uniprot:E2RLZ2
Length = 156
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 75 TCFVRDGKTYCKRDYVRLFGT--KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQL 132
T + + C+RDY+RLFGT C C+ + VMRA++ +YH+ CF C +C ++
Sbjct: 64 TLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRF 123
Query: 133 VPGDEFALREDGLFCKDDHE 152
GD+F L+ + + C+ D+E
Sbjct: 124 CVGDKFFLKNNMILCQMDYE 143
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDE-NCTCFVRDGKTYCKRDYV 62
C GC +I D+Y+L+ A D WH CL+CA C L E T + + C+RDY+
Sbjct: 24 CAGCNRKIKDRYLLK-ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYL 79
>UNIPROTKB|E9PK83 [details] [associations]
symbol:LMO1 "Rhombotin-1" species:9606 "Homo sapiens"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] Pfam:PF00412 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132 GO:GO:0005634
GO:GO:0046872 GO:GO:0008270 GO:GO:0045944 GO:GO:0000122
Gene3D:2.10.110.10 EMBL:AC091013 HGNC:HGNC:6641 ChiTaRS:LMO1
IPI:IPI00979256 ProteinModelPortal:E9PK83 SMR:E9PK83
Ensembl:ENST00000534484 ArrayExpress:E9PK83 Bgee:E9PK83
Uniprot:E9PK83
Length = 145
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 75 TCFVRDGKTYCKRDYVRLFGT--KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQL 132
T + + C+RDY+RLFGT C C+ + VMRA++ +YH+ CF C +C ++
Sbjct: 53 TLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRF 112
Query: 133 VPGDEFALREDGLFCKDDHE 152
GD+F L+ + + C+ D+E
Sbjct: 113 CVGDKFFLKNNMILCQMDYE 132
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDE-NCTCFVRDGKTYCKRDYV 62
C GC +I D+Y+L+ A D WH CL+CA C L E T + + C+RDY+
Sbjct: 13 CAGCNRKIKDRYLLK-ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYL 68
>UNIPROTKB|E9PSF5 [details] [associations]
symbol:LMO1 "Rhombotin-1" species:9606 "Homo sapiens"
[GO:0008270 "zinc ion binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10 CTD:4004
EMBL:AC091013 UniGene:Hs.654426 GeneID:4004 KEGG:hsa:4004
HGNC:HGNC:6641 ChiTaRS:LMO1 IPI:IPI00877062 RefSeq:NP_001257357.1
ProteinModelPortal:E9PSF5 SMR:E9PSF5 Ensembl:ENST00000428101
UCSC:uc001mgh.1 ArrayExpress:E9PSF5 Bgee:E9PSF5 Uniprot:E9PSF5
Length = 155
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 75 TCFVRDGKTYCKRDYVRLFGT--KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQL 132
T + + C+RDY+RLFGT C C+ + VMRA++ +YH+ CF C +C ++
Sbjct: 63 TLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRF 122
Query: 133 VPGDEFALREDGLFCKDDHE 152
GD+F L+ + + C+ D+E
Sbjct: 123 CVGDKFFLKNNMILCQMDYE 142
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDE-NCTCFVRDGKTYCKRDYV 62
C GC +I D+Y+L+ A D WH CL+CA C L E T + + C+RDY+
Sbjct: 23 CAGCNRKIKDRYLLK-ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYL 78
>UNIPROTKB|P25800 [details] [associations]
symbol:LMO1 "Rhombotin-1" species:9606 "Homo sapiens"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] Pfam:PF00412 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132 GO:GO:0005634
GO:GO:0046872 GO:GO:0008270 GO:GO:0045944 GO:GO:0000122
Gene3D:2.10.110.10 HOGENOM:HOG000232175 HOVERGEN:HBG054231
OrthoDB:EOG405S2K CTD:4004 eggNOG:NOG288849 OMA:GSFETQV EMBL:M26682
EMBL:AJ277662 EMBL:AC091013 EMBL:BC069673 EMBL:BC069752
EMBL:BC069793 EMBL:BC096056 EMBL:BC096057 IPI:IPI00396316
PIR:A32795 RefSeq:NP_002306.1 UniGene:Hs.654426
ProteinModelPortal:P25800 SMR:P25800 STRING:P25800
PhosphoSite:P25800 DMDM:132532 PRIDE:P25800 DNASU:4004
Ensembl:ENST00000335790 GeneID:4004 KEGG:hsa:4004 UCSC:uc001mgg.1
GeneCards:GC11M008202 HGNC:HGNC:6641 MIM:186921 neXtProt:NX_P25800
PharmGKB:PA30407 InParanoid:P25800 ChiTaRS:LMO1 GenomeRNAi:4004
NextBio:15708 PMAP-CutDB:P25800 ArrayExpress:P25800 Bgee:P25800
CleanEx:HS_LMO1 Genevestigator:P25800 GermOnline:ENSG00000166407
Uniprot:P25800
Length = 156
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 75 TCFVRDGKTYCKRDYVRLFGT--KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQL 132
T + + C+RDY+RLFGT C C+ + VMRA++ +YH+ CF C +C ++
Sbjct: 64 TLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRF 123
Query: 133 VPGDEFALREDGLFCKDDHE 152
GD+F L+ + + C+ D+E
Sbjct: 124 CVGDKFFLKNNMILCQMDYE 143
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDE-NCTCFVRDGKTYCKRDYV 62
C GC +I D+Y+L+ A D WH CL+CA C L E T + + C+RDY+
Sbjct: 24 CAGCNRKIKDRYLLK-ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYL 79
>UNIPROTKB|Q3B8H4 [details] [associations]
symbol:lmo1 "Rhombotin-1" species:8355 "Xenopus laevis"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023
SMART:SM00132 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
Gene3D:2.10.110.10 HSSP:Q13642 HOVERGEN:HBG054231 CTD:4004
EMBL:BC106431 RefSeq:NP_001089735.1 UniGene:Xl.82232
ProteinModelPortal:Q3B8H4 SMR:Q3B8H4 GeneID:734798 KEGG:xla:734798
Uniprot:Q3B8H4
Length = 156
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 75 TCFVRDGKTYCKRDYVRLFGT--KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQL 132
T + + C+RDY+RLFGT C C+ + VMRA++ +YH+ CF C +C ++
Sbjct: 64 TLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRF 123
Query: 133 VPGDEFALREDGLFCKDDHE 152
GD+F L+ + + C+ D+E
Sbjct: 124 CVGDKFFLKNNMILCQMDYE 143
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDE-NCTCFVRDGKTYCKRDYV 62
C GC +I D+Y+L+ A D WH CL+CA C L E T + + C+RDY+
Sbjct: 24 CAGCNRKIKDRYLLK-ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYL 79
>UNIPROTKB|Q9YH16 [details] [associations]
symbol:lmo3 "LIM domain only protein 3" species:8355
"Xenopus laevis" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] Pfam:PF00412 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132 GO:GO:0046872
GO:GO:0008270 Gene3D:2.10.110.10 HSSP:P61969 HOVERGEN:HBG054231
EMBL:U94991 EMBL:BC079734 RefSeq:NP_001084116.1 UniGene:Xl.6611
ProteinModelPortal:Q9YH16 SMR:Q9YH16 GeneID:399311 KEGG:xla:399311
CTD:399311 Xenbase:XB-GENE-6254052 Uniprot:Q9YH16
Length = 156
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 31/85 (36%), Positives = 49/85 (57%)
Query: 75 TCFVRDGKTYCKRDYVRLFGT--KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQL 132
T + + C+RDY+RLFG C C+ + VMRAK +YH+ CF C +C ++
Sbjct: 64 TLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQRF 123
Query: 133 VPGDEFALREDGLFCKDDHE-GMDK 156
GD+F L+ + + C+ D+E G+ K
Sbjct: 124 CVGDKFFLKNNMILCQTDYEEGLMK 148
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDE-NCTCFVRDGKTYCKRDYV 62
C GC +I D+Y+L+ A D WH CL+CA C L E T + + C+RDY+
Sbjct: 24 CAGCNRKIKDRYLLK-ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYL 79
>MGI|MGI:102812 [details] [associations]
symbol:Lmo1 "LIM domain only 1" species:10090 "Mus musculus"
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IGI] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO;IGI] [GO:0046872
"metal ion binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132 MGI:MGI:102812
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0045944
GO:GO:0000122 Gene3D:2.10.110.10 GeneTree:ENSGT00680000099670
HOGENOM:HOG000232175 HOVERGEN:HBG054231 OrthoDB:EOG405S2K CTD:4004
eggNOG:NOG288849 OMA:GSFETQV EMBL:AJ296304 EMBL:BC053074
IPI:IPI00410856 RefSeq:NP_476514.1 UniGene:Mm.360145
ProteinModelPortal:Q924W9 SMR:Q924W9 STRING:Q924W9
PhosphoSite:Q924W9 PRIDE:Q924W9 Ensembl:ENSMUST00000036992
GeneID:109594 KEGG:mmu:109594 InParanoid:Q924W9 NextBio:362409
Bgee:Q924W9 CleanEx:MM_LMO1 Genevestigator:Q924W9
GermOnline:ENSMUSG00000036111 Uniprot:Q924W9
Length = 156
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 75 TCFVRDGKTYCKRDYVRLFGT--KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQL 132
T + + C+RDY+RLFGT C C+ + VMRA++ +YH+ CF C +C ++
Sbjct: 64 TLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRF 123
Query: 133 VPGDEFALREDGLFCKDDHE 152
GD+F L+ + + C+ D+E
Sbjct: 124 CVGDKFFLKNNMILCQVDYE 143
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDE-NCTCFVRDGKTYCKRDYV 62
C GC +I D+Y+L+ A D WH CL+CA C L E T + + C+RDY+
Sbjct: 24 CAGCNRKIKDRYLLK-ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYL 79
>ZFIN|ZDB-GENE-050522-201 [details] [associations]
symbol:lmo3 "LIM domain only 3" species:7955 "Danio
rerio" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
ZFIN:ZDB-GENE-050522-201 GO:GO:0046872 GO:GO:0008270
Gene3D:2.10.110.10 GeneTree:ENSGT00680000099670
HOGENOM:HOG000232175 HOVERGEN:HBG054231 OMA:HTEIGIY EMBL:AL954848
IPI:IPI00855464 UniGene:Dr.85219 SMR:B0R1F5
Ensembl:ENSDART00000112860 Uniprot:B0R1F5
Length = 167
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 31/85 (36%), Positives = 49/85 (57%)
Query: 75 TCFVRDGKTYCKRDYVRLFGT--KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQL 132
T + + C+RDY+RLFG C C+ + VMRAK +YH+ CF C +C ++
Sbjct: 75 TLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQRF 134
Query: 133 VPGDEFALREDGLFCKDDHE-GMDK 156
GD+F L+ + + C+ D+E G+ K
Sbjct: 135 CVGDKFFLKNNMILCQTDYEEGLMK 159
Score = 115 (45.5 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDE-NCTCFVRDGKTYCKRDYV 62
C GC +I D+Y+L+ A D WH CL+CA C L E T + + C+RDY+
Sbjct: 35 CAGCNRKIKDRYLLK-ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYL 90
>ZFIN|ZDB-GENE-021115-6 [details] [associations]
symbol:lmo1 "LIM domain only 1" species:7955 "Danio
rerio" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISS] [GO:0046872 "metal ion binding"
evidence=IEA] Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478
PROSITE:PS50023 SMART:SM00132 ZFIN:ZDB-GENE-021115-6 GO:GO:0005634
GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 HSSP:P61969 HOGENOM:HOG000232175
HOVERGEN:HBG054231 OrthoDB:EOG405S2K CTD:4004 eggNOG:NOG288849
OMA:GSFETQV EMBL:AF398514 EMBL:BC092690 IPI:IPI00488481
RefSeq:NP_775326.1 UniGene:Dr.77277 ProteinModelPortal:Q8JFQ2
SMR:Q8JFQ2 STRING:Q8JFQ2 Ensembl:ENSDART00000044208 GeneID:280646
KEGG:dre:280646 InParanoid:Q8JFQ2 NextBio:20804856
ArrayExpress:Q8JFQ2 Bgee:Q8JFQ2 Uniprot:Q8JFQ2
Length = 155
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 75 TCFVRDGKTYCKRDYVRLFGT--KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQL 132
T + + C+RDY+RLFGT C C+ + VMRA++ +YH+ CF C +C ++
Sbjct: 63 TLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRF 122
Query: 133 VPGDEFALREDGLFCKDDHE 152
GD+F L+ + + C+ D+E
Sbjct: 123 CVGDKFFLKNNMILCQMDYE 142
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDE-NCTCFVRDGKTYCKRDYV 62
C GC +I D+Y+L+ A D WH CL+CA C L E T + + C+RDY+
Sbjct: 23 CAGCNRKIKDRYLLK-ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYL 78
>UNIPROTKB|A9ED79 [details] [associations]
symbol:LMO1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132 GO:GO:0005634
GO:GO:0046872 GO:GO:0008270 GO:GO:0045944 GO:GO:0000122
Gene3D:2.10.110.10 GeneTree:ENSGT00680000099670 HOVERGEN:HBG054231
CTD:4004 OMA:GSFETQV EMBL:FP340194 EMBL:AB304399
RefSeq:NP_001106526.1 SMR:A9ED79 Ensembl:ENSSSCT00000022371
GeneID:100127356 KEGG:ssc:100127356 Uniprot:A9ED79
Length = 156
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 75 TCFVRDGKTYCKRDYVRLFGT--KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQL 132
T + + C+RDY+RLFGT C C+ + VMRA++ +YH+ CF C +C ++
Sbjct: 64 TLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRF 123
Query: 133 VPGDEFALREDGLFCKDDHE 152
GD+F L+ + + C+ D+E
Sbjct: 124 CVGDKFFLKNNMILCQLDYE 143
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDE-NCTCFVRDGKTYCKRDYV 62
C GC +I D+Y+L+ A D WH CL+CA C L E T + + C+RDY+
Sbjct: 24 CAGCNRKIKDRYLLK-ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYL 79
>UNIPROTKB|F1NU72 [details] [associations]
symbol:LMO2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000977
"RNA polymerase II regulatory region sequence-specific DNA binding"
evidence=IEA] [GO:0001102 "RNA polymerase II activating
transcription factor binding" evidence=IEA] [GO:0001190 "RNA
polymerase II transcription factor binding transcription factor
activity involved in positive regulation of transcription"
evidence=IEA] [GO:0001228 "RNA polymerase II transcription
regulatory region sequence-specific DNA binding transcription
factor activity involved in positive regulation of transcription"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=IEA]
[GO:0035162 "embryonic hemopoiesis" evidence=IEA] [GO:0042789 "mRNA
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043425 "bHLH transcription factor binding" evidence=IEA]
[GO:0045647 "negative regulation of erythrocyte differentiation"
evidence=IEA] [GO:0048037 "cofactor binding" evidence=IEA]
[GO:0070888 "E-box binding" evidence=IEA] [GO:0097067 "cellular
response to thyroid hormone stimulus" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
GO:GO:0046872 GO:GO:0008270 GO:GO:0003682 GO:GO:0005667
Gene3D:2.10.110.10 GO:GO:0048037 GO:GO:0001190
GeneTree:ENSGT00680000099670 GO:GO:0000977 GO:GO:0042789
GO:GO:0070888 GO:GO:0097067 GO:GO:0045647 GO:GO:0001228 OMA:CEKRIRA
EMBL:AADN02073657 IPI:IPI00575087 Ensembl:ENSGALT00000000471
ArrayExpress:F1NU72 Uniprot:F1NU72
Length = 144
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 40/136 (29%), Positives = 64/136 (47%)
Query: 19 ILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK-NQFLDE-NCTC 76
+L++ P L L C C Q + + F++ Y D +S + L E
Sbjct: 6 VLQIPPSL------LTCGGCQQNIGDRY--FLKAIDQYWHEDCLSCDLCGCRLGEVGRRL 57
Query: 77 FVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVP 134
+ + G+ C+RDY+RLFG C C+ + + MR K+K+YH++CF C C K
Sbjct: 58 YYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCV 117
Query: 135 GDEFALREDGLFCKDD 150
GD + L + C+ D
Sbjct: 118 GDRYLLINSDIVCEQD 133
Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 34/104 (32%), Positives = 46/104 (44%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDE-NCTCFVRDGKTYCKRDYV 62
L C GC I D+Y L+ A D WH CL C C L E + + G+ C+RDY+
Sbjct: 13 LLTCGGCQQNIGDRYFLK-AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYL 71
Query: 63 SSEKNQFLDENCTCFVRDGK-TYCKRDYV-RLFGTKCEKCNLNF 104
L +C +R + T +D V L KC C +F
Sbjct: 72 RLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHF 115
>UNIPROTKB|Q1LZ94 [details] [associations]
symbol:LMO2 "Rhombotin-2" species:9913 "Bos taurus"
[GO:0097067 "cellular response to thyroid hormone stimulus"
evidence=IEA] [GO:0070888 "E-box binding" evidence=IEA] [GO:0048037
"cofactor binding" evidence=IEA] [GO:0045647 "negative regulation
of erythrocyte differentiation" evidence=IEA] [GO:0043425 "bHLH
transcription factor binding" evidence=IEA] [GO:0042789 "mRNA
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0035162 "embryonic hemopoiesis" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0001228 "RNA polymerase II transcription
regulatory region sequence-specific DNA binding transcription
factor activity involved in positive regulation of transcription"
evidence=IEA] [GO:0001190 "RNA polymerase II transcription factor
binding transcription factor activity involved in positive
regulation of transcription" evidence=IEA] [GO:0001102 "RNA
polymerase II activating transcription factor binding"
evidence=IEA] [GO:0000977 "RNA polymerase II regulatory region
sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132 GO:GO:0046872
GO:GO:0008270 GO:GO:0003682 GO:GO:0005667 Gene3D:2.10.110.10
GO:GO:0048037 GO:GO:0001190 GeneTree:ENSGT00680000099670
GO:GO:0000977 GO:GO:0042789 GO:GO:0070888 GO:GO:0035162
GO:GO:0097067 GO:GO:0045647 GO:GO:0001228 HOGENOM:HOG000232175
HOVERGEN:HBG054231 EMBL:BC116134 IPI:IPI00688250
RefSeq:NP_001069820.1 UniGene:Bt.17081 ProteinModelPortal:Q1LZ94
SMR:Q1LZ94 STRING:Q1LZ94 PRIDE:Q1LZ94 Ensembl:ENSBTAT00000009126
GeneID:614876 KEGG:bta:614876 CTD:4005 eggNOG:NOG319108
InParanoid:Q1LZ94 KO:K15612 OMA:CEKRIRA OrthoDB:EOG4001KG
NextBio:20899332 Uniprot:Q1LZ94
Length = 158
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 38/129 (29%), Positives = 61/129 (47%)
Query: 26 LEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK-NQFLDE-NCTCFVRDGKT 83
L+ + L C C Q + + F++ Y D +S + L E + + G+
Sbjct: 21 LQMPPSLLTCGGCQQNIGDRY--FLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRK 78
Query: 84 YCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALR 141
C+RDY+RLFG C C+ + + MR K+K+YH++CF C C K GD + L
Sbjct: 79 LCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLI 138
Query: 142 EDGLFCKDD 150
+ C+ D
Sbjct: 139 NSDIVCEQD 147
Score = 106 (42.4 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 34/104 (32%), Positives = 46/104 (44%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDE-NCTCFVRDGKTYCKRDYV 62
L C GC I D+Y L+ A D WH CL C C L E + + G+ C+RDY+
Sbjct: 27 LLTCGGCQQNIGDRYFLK-AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYL 85
Query: 63 SSEKNQFLDENCTCFVRDGK-TYCKRDYV-RLFGTKCEKCNLNF 104
L +C +R + T +D V L KC C +F
Sbjct: 86 RLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHF 129
>UNIPROTKB|F1PKL3 [details] [associations]
symbol:LMO2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023
SMART:SM00132 GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 OMA:CEKRIRA EMBL:AAEX03011393
EMBL:AAEX03011391 EMBL:AAEX03011392 EMBL:AAEX03011394
EMBL:AAEX03011395 Ensembl:ENSCAFT00000011428 Uniprot:F1PKL3
Length = 223
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 40/136 (29%), Positives = 64/136 (47%)
Query: 19 ILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK-NQFLDE-NCTC 76
+L++ P L L C C Q + + F++ Y D +S + L E
Sbjct: 85 VLQIPPSL------LTCGGCQQNIGDRY--FLKAIDQYWHEDCLSCDLCGCRLGEVGRRL 136
Query: 77 FVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVP 134
+ + G+ C+RDY+RLFG C C+ + + MR K+K+YH++CF C C K
Sbjct: 137 YYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCV 196
Query: 135 GDEFALREDGLFCKDD 150
GD + L + C+ D
Sbjct: 197 GDRYLLINSDIVCEQD 212
Score = 106 (42.4 bits), Expect = 0.00020, P = 0.00020
Identities = 34/104 (32%), Positives = 46/104 (44%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDE-NCTCFVRDGKTYCKRDYV 62
L C GC I D+Y L+ A D WH CL C C L E + + G+ C+RDY+
Sbjct: 92 LLTCGGCQQNIGDRYFLK-AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYL 150
Query: 63 SSEKNQFLDENCTCFVRDGK-TYCKRDYV-RLFGTKCEKCNLNF 104
L +C +R + T +D V L KC C +F
Sbjct: 151 RLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHF 194
>UNIPROTKB|P25791 [details] [associations]
symbol:LMO2 "Rhombotin-2" species:9606 "Homo sapiens"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0035162 "embryonic hemopoiesis"
evidence=IEA] [GO:0045647 "negative regulation of erythrocyte
differentiation" evidence=IEA] [GO:0097067 "cellular response to
thyroid hormone stimulus" evidence=IDA] [GO:0007275 "multicellular
organismal development" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0070888 "E-box binding" evidence=IDA] [GO:0001190
"RNA polymerase II transcription factor binding transcription
factor activity involved in positive regulation of transcription"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0000977 "RNA
polymerase II regulatory region sequence-specific DNA binding"
evidence=IDA] [GO:0005667 "transcription factor complex"
evidence=IDA] [GO:0000981 "sequence-specific DNA binding RNA
polymerase II transcription factor activity" evidence=IDA]
[GO:0001102 "RNA polymerase II activating transcription factor
binding" evidence=IPI] [GO:0043425 "bHLH transcription factor
binding" evidence=IPI] [GO:0048037 "cofactor binding" evidence=IPI]
[GO:0042789 "mRNA transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0001228 "RNA polymerase II transcription
regulatory region sequence-specific DNA binding transcription
factor activity involved in positive regulation of transcription"
evidence=IDA] Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478
PROSITE:PS50023 SMART:SM00132 GO:GO:0007275 GO:GO:0046872
GO:GO:0008270 GO:GO:0003682 GO:GO:0005667 Gene3D:2.10.110.10
GO:GO:0048037 GO:GO:0001190 GO:GO:0000977 GO:GO:0042789
GO:GO:0070888 GO:GO:0035162 GO:GO:0097067 GO:GO:0045647
GO:GO:0001228 PDB:2XJY PDB:2XJZ PDBsum:2XJY PDBsum:2XJZ
HOGENOM:HOG000232175 HOVERGEN:HBG054231 CTD:4005 eggNOG:NOG319108
KO:K15612 OMA:CEKRIRA OrthoDB:EOG4001KG EMBL:X61118 EMBL:BC034041
EMBL:BC035607 EMBL:BC042426 EMBL:BC073973 EMBL:AF257211
IPI:IPI00016852 IPI:IPI00915342 IPI:IPI00926017 PIR:S29477
RefSeq:NP_001135787.1 RefSeq:NP_001135788.1 RefSeq:NP_005565.2
UniGene:Hs.34560 ProteinModelPortal:P25791 SMR:P25791 IntAct:P25791
MINT:MINT-233526 STRING:P25791 PhosphoSite:P25791 DMDM:132533
PRIDE:P25791 DNASU:4005 Ensembl:ENST00000257818
Ensembl:ENST00000395833 Ensembl:ENST00000411482 GeneID:4005
KEGG:hsa:4005 UCSC:uc001mvc.3 UCSC:uc010rem.2 GeneCards:GC11M033880
H-InvDB:HIX0009544 HGNC:HGNC:6642 HPA:CAB016258 MIM:180385
neXtProt:NX_P25791 PharmGKB:PA30408 InParanoid:P25791
PhylomeDB:P25791 ChiTaRS:LMO2 EvolutionaryTrace:P25791
GenomeRNAi:4005 NextBio:15712 Bgee:P25791 CleanEx:HS_LMO2
Genevestigator:P25791 GermOnline:ENSG00000135363 Uniprot:P25791
Length = 158
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 40/136 (29%), Positives = 64/136 (47%)
Query: 19 ILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK-NQFLDE-NCTC 76
+L++ P L L C C Q + + F++ Y D +S + L E
Sbjct: 20 VLQIPPSL------LTCGGCQQNIGDRY--FLKAIDQYWHEDCLSCDLCGCRLGEVGRRL 71
Query: 77 FVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVP 134
+ + G+ C+RDY+RLFG C C+ + + MR K+K+YH++CF C C K
Sbjct: 72 YYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCV 131
Query: 135 GDEFALREDGLFCKDD 150
GD + L + C+ D
Sbjct: 132 GDRYLLINSDIVCEQD 147
Score = 106 (42.4 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 34/104 (32%), Positives = 46/104 (44%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDE-NCTCFVRDGKTYCKRDYV 62
L C GC I D+Y L+ A D WH CL C C L E + + G+ C+RDY+
Sbjct: 27 LLTCGGCQQNIGDRYFLK-AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYL 85
Query: 63 SSEKNQFLDENCTCFVRDGK-TYCKRDYV-RLFGTKCEKCNLNF 104
L +C +R + T +D V L KC C +F
Sbjct: 86 RLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHF 129
>UNIPROTKB|F1SGS5 [details] [associations]
symbol:LMO2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0097067 "cellular response to thyroid hormone stimulus"
evidence=IEA] [GO:0070888 "E-box binding" evidence=IEA] [GO:0048037
"cofactor binding" evidence=IEA] [GO:0045647 "negative regulation
of erythrocyte differentiation" evidence=IEA] [GO:0043425 "bHLH
transcription factor binding" evidence=IEA] [GO:0042789 "mRNA
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0035162 "embryonic hemopoiesis" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0001228 "RNA polymerase II transcription
regulatory region sequence-specific DNA binding transcription
factor activity involved in positive regulation of transcription"
evidence=IEA] [GO:0001190 "RNA polymerase II transcription factor
binding transcription factor activity involved in positive
regulation of transcription" evidence=IEA] [GO:0001102 "RNA
polymerase II activating transcription factor binding"
evidence=IEA] [GO:0000977 "RNA polymerase II regulatory region
sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132 GO:GO:0046872
GO:GO:0008270 GO:GO:0003682 GO:GO:0005667 Gene3D:2.10.110.10
GO:GO:0048037 GO:GO:0001190 GeneTree:ENSGT00680000099670
GO:GO:0000977 GO:GO:0042789 GO:GO:0070888 GO:GO:0035162
GO:GO:0097067 GO:GO:0045647 GO:GO:0001228 OMA:CEKRIRA EMBL:CU463884
ProteinModelPortal:F1SGS5 SMR:F1SGS5 Ensembl:ENSSSCT00000014533
Uniprot:F1SGS5
Length = 158
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 40/136 (29%), Positives = 64/136 (47%)
Query: 19 ILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK-NQFLDE-NCTC 76
+L++ P L L C C Q + + F++ Y D +S + L E
Sbjct: 20 VLQIPPSL------LTCGGCQQNIGDRY--FLKAIDQYWHEDCLSCDLCGCRLGEVGRRL 71
Query: 77 FVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVP 134
+ + G+ C+RDY+RLFG C C+ + + MR K+K+YH++CF C C K
Sbjct: 72 YYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCV 131
Query: 135 GDEFALREDGLFCKDD 150
GD + L + C+ D
Sbjct: 132 GDRYLLINSDIVCEQD 147
Score = 106 (42.4 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 34/104 (32%), Positives = 46/104 (44%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDE-NCTCFVRDGKTYCKRDYV 62
L C GC I D+Y L+ A D WH CL C C L E + + G+ C+RDY+
Sbjct: 27 LLTCGGCQQNIGDRYFLK-AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYL 85
Query: 63 SSEKNQFLDENCTCFVRDGK-TYCKRDYV-RLFGTKCEKCNLNF 104
L +C +R + T +D V L KC C +F
Sbjct: 86 RLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHF 129
>UNIPROTKB|Q5M8V8 [details] [associations]
symbol:lmo2 "Rhombotin-2" species:8364 "Xenopus (Silurana)
tropicalis" [GO:0005634 "nucleus" evidence=ISS] [GO:0030218
"erythrocyte differentiation" evidence=ISS] [GO:0003677 "DNA
binding" evidence=ISS] Pfam:PF00412 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132 GO:GO:0005634
GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10 GO:GO:0030218
GO:GO:0001568 GeneTree:ENSGT00680000099670 GO:GO:0035162
HSSP:P25801 HOGENOM:HOG000232175 HOVERGEN:HBG054231 CTD:4005
eggNOG:NOG319108 KO:K15612 OrthoDB:EOG4001KG EMBL:BC087809
RefSeq:NP_001011238.1 UniGene:Str.14577 ProteinModelPortal:Q5M8V8
SMR:Q5M8V8 STRING:Q5M8V8 Ensembl:ENSXETT00000008646 GeneID:496679
KEGG:xtr:496679 Xenbase:XB-GENE-479144 InParanoid:Q5M8V8
OMA:TKLNEMM Bgee:Q5M8V8 Uniprot:Q5M8V8
Length = 158
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 40/136 (29%), Positives = 64/136 (47%)
Query: 19 ILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK-NQFLDE-NCTC 76
+L++ P L L C C Q + + F++ Y D +S + L E
Sbjct: 20 VLQIPPSL------LTCGGCQQSIGDRY--FLKAIDQYWHEDCLSCDLCGCRLGEVGRRL 71
Query: 77 FVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVP 134
+ + G+ C+RDY+RLFG C C+ + + MR K+K+YH++CF C C K
Sbjct: 72 YYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAFEMTMRVKDKVYHLECFKCAACQKHFCV 131
Query: 135 GDEFALREDGLFCKDD 150
GD + L + C+ D
Sbjct: 132 GDRYLLINSDIVCEQD 147
Score = 106 (42.4 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 34/104 (32%), Positives = 46/104 (44%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDE-NCTCFVRDGKTYCKRDYV 62
L C GC I D+Y L+ A D WH CL C C L E + + G+ C+RDY+
Sbjct: 27 LLTCGGCQQSIGDRYFLK-AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYL 85
Query: 63 SSEKNQFLDENCTCFVRDGK-TYCKRDYV-RLFGTKCEKCNLNF 104
L +C +R + T +D V L KC C +F
Sbjct: 86 RLFGQDGLCASCDKRIRAFEMTMRVKDKVYHLECFKCAACQKHF 129
>UNIPROTKB|Q90XH3 [details] [associations]
symbol:lmo2 "Rhombotin-2" species:8355 "Xenopus laevis"
[GO:0005634 "nucleus" evidence=ISS] [GO:0030218 "erythrocyte
differentiation" evidence=IGI] [GO:0003677 "DNA binding"
evidence=ISS] Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478
PROSITE:PS50023 SMART:SM00132 GO:GO:0005634 GO:GO:0046872
GO:GO:0008270 Gene3D:2.10.110.10 GO:GO:0030218 HSSP:P25801
HOVERGEN:HBG054231 CTD:4005 KO:K15612 EMBL:AF374473 EMBL:BC097502
RefSeq:NP_001081112.1 UniGene:Xl.9549 ProteinModelPortal:Q90XH3
SMR:Q90XH3 GeneID:394388 KEGG:xla:394388 Xenbase:XB-GENE-6254426
Uniprot:Q90XH3
Length = 158
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 40/136 (29%), Positives = 64/136 (47%)
Query: 19 ILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK-NQFLDE-NCTC 76
+L++ P L L C C Q + + F++ Y D +S + L E
Sbjct: 20 VLQIPPSL------LTCGGCQQSIGDRY--FLKAIDQYWHEDCLSCDLCGCRLGEVGRRL 71
Query: 77 FVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVP 134
+ + G+ C+RDY+RLFG C C+ + + MR K+K+YH++CF C C K
Sbjct: 72 YYKLGRKLCRRDYLRLFGQDGLCASCDNRIRAYEMTMRVKDKVYHLECFKCAACQKHFCV 131
Query: 135 GDEFALREDGLFCKDD 150
GD + L + C+ D
Sbjct: 132 GDRYLLINSDIVCEQD 147
Score = 106 (42.4 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 34/104 (32%), Positives = 46/104 (44%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDE-NCTCFVRDGKTYCKRDYV 62
L C GC I D+Y L+ A D WH CL C C L E + + G+ C+RDY+
Sbjct: 27 LLTCGGCQQSIGDRYFLK-AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYL 85
Query: 63 SSEKNQFLDENCTCFVRDGK-TYCKRDYV-RLFGTKCEKCNLNF 104
L +C +R + T +D V L KC C +F
Sbjct: 86 RLFGQDGLCASCDNRIRAYEMTMRVKDKVYHLECFKCAACQKHF 129
>MGI|MGI:102811 [details] [associations]
symbol:Lmo2 "LIM domain only 2" species:10090 "Mus musculus"
[GO:0000977 "RNA polymerase II regulatory region sequence-specific
DNA binding" evidence=ISO] [GO:0000981 "sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=ISO] [GO:0001102 "RNA polymerase II activating
transcription factor binding" evidence=ISO] [GO:0001190 "RNA
polymerase II transcription factor binding transcription factor
activity involved in positive regulation of transcription"
evidence=ISO] [GO:0001228 "RNA polymerase II transcription
regulatory region sequence-specific DNA binding transcription
factor activity involved in positive regulation of transcription"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005667
"transcription factor complex" evidence=ISO] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0035162 "embryonic hemopoiesis"
evidence=IGI] [GO:0042789 "mRNA transcription from RNA polymerase
II promoter" evidence=ISO] [GO:0043234 "protein complex"
evidence=IPI] [GO:0043425 "bHLH transcription factor binding"
evidence=ISO] [GO:0045647 "negative regulation of erythrocyte
differentiation" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO;IGI]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0048037 "cofactor
binding" evidence=ISO] [GO:0070888 "E-box binding" evidence=ISO]
[GO:0097067 "cellular response to thyroid hormone stimulus"
evidence=ISO] Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478
PROSITE:PS50023 SMART:SM00132 MGI:MGI:102811 GO:GO:0005634
GO:GO:0043234 GO:GO:0046872 GO:GO:0008270 GO:GO:0045944
GO:GO:0003682 Gene3D:2.10.110.10 GO:GO:0035162 GO:GO:0045647
PDB:2L6Y PDB:2L6Z PDBsum:2L6Y PDBsum:2L6Z PDB:1J2O PDB:2LXD
PDBsum:1J2O PDBsum:2LXD HOGENOM:HOG000232175 HOVERGEN:HBG054231
CTD:4005 eggNOG:NOG319108 KO:K15612 OrthoDB:EOG4001KG ChiTaRS:LMO2
EMBL:M64360 EMBL:BC057880 IPI:IPI00114239 PIR:A39370
RefSeq:NP_001135808.1 RefSeq:NP_001135809.1 RefSeq:NP_032531.2
UniGene:Mm.29266 ProteinModelPortal:P25801 SMR:P25801
DIP:DIP-24247N IntAct:P25801 MINT:MINT-2567948 STRING:P25801
PhosphoSite:P25801 PRIDE:P25801 Ensembl:ENSMUST00000123437
Ensembl:ENSMUST00000163256 Ensembl:ENSMUST00000170926 GeneID:16909
KEGG:mmu:16909 InParanoid:P25801 EvolutionaryTrace:P25801
NextBio:290948 Bgee:P25801 CleanEx:MM_LMO2 Genevestigator:P25801
GermOnline:ENSMUSG00000032698 Uniprot:P25801
Length = 158
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 40/136 (29%), Positives = 64/136 (47%)
Query: 19 ILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK-NQFLDE-NCTC 76
+L++ P L L C C Q + + F++ Y D +S + L E
Sbjct: 20 VLQIPPSL------LTCGGCQQNIGDRY--FLKAIDQYWHEDCLSCDLCGCRLGEVGRRL 71
Query: 77 FVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVP 134
+ + G+ C+RDY+RLFG C C+ + + MR K+K+YH++CF C C K
Sbjct: 72 YYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCV 131
Query: 135 GDEFALREDGLFCKDD 150
GD + L + C+ D
Sbjct: 132 GDRYLLINSDIVCEQD 147
Score = 106 (42.4 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 34/104 (32%), Positives = 46/104 (44%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDE-NCTCFVRDGKTYCKRDYV 62
L C GC I D+Y L+ A D WH CL C C L E + + G+ C+RDY+
Sbjct: 27 LLTCGGCQQNIGDRYFLK-AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYL 85
Query: 63 SSEKNQFLDENCTCFVRDGK-TYCKRDYV-RLFGTKCEKCNLNF 104
L +C +R + T +D V L KC C +F
Sbjct: 86 RLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHF 129
>RGD|1307101 [details] [associations]
symbol:Lmo2 "LIM domain only 2" species:10116 "Rattus
norvegicus" [GO:0000977 "RNA polymerase II regulatory region
sequence-specific DNA binding" evidence=ISO] [GO:0000981
"sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=ISO] [GO:0001102 "RNA polymerase II
activating transcription factor binding" evidence=ISO] [GO:0001190
"RNA polymerase II transcription factor binding transcription
factor activity involved in positive regulation of transcription"
evidence=ISO] [GO:0001228 "RNA polymerase II transcription
regulatory region sequence-specific DNA binding transcription
factor activity involved in positive regulation of transcription"
evidence=ISO] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005667 "transcription factor complex"
evidence=ISO] [GO:0008150 "biological_process" evidence=ND]
[GO:0035162 "embryonic hemopoiesis" evidence=ISO] [GO:0042789 "mRNA
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0043234 "protein complex" evidence=ISO] [GO:0043425 "bHLH
transcription factor binding" evidence=ISO] [GO:0045647 "negative
regulation of erythrocyte differentiation" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0048037 "cofactor
binding" evidence=ISO] [GO:0070888 "E-box binding" evidence=ISO]
[GO:0097067 "cellular response to thyroid hormone stimulus"
evidence=ISO] [GO:0003677 "DNA binding" evidence=ISO] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
RGD:1307101 GO:GO:0046872 GO:GO:0008270 GO:GO:0003682 GO:GO:0005667
Gene3D:2.10.110.10 GO:GO:0048037 GO:GO:0001190 GO:GO:0000977
GO:GO:0042789 GO:GO:0070888 GO:GO:0035162 EMBL:CH473949
GO:GO:0097067 GO:GO:0045647 GO:GO:0001228 HOGENOM:HOG000232175
HOVERGEN:HBG054231 CTD:4005 eggNOG:NOG319108 KO:K15612 OMA:CEKRIRA
OrthoDB:EOG4001KG IPI:IPI00373656 RefSeq:NP_001032435.2
UniGene:Rn.155591 GeneID:362176 KEGG:rno:362176 NextBio:678912
EMBL:BC105772 RefSeq:NP_001231708.1 RefSeq:NP_001231709.1
RefSeq:NP_001231710.1 SMR:Q3KRD2 STRING:Q3KRD2 UCSC:RGD:1307101
InParanoid:Q3KRD2 Genevestigator:Q3KRD2 Uniprot:Q3KRD2
Length = 158
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 40/136 (29%), Positives = 64/136 (47%)
Query: 19 ILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK-NQFLDE-NCTC 76
+L++ P L L C C Q + + F++ Y D +S + L E
Sbjct: 20 VLQIPPSL------LTCGGCQQNIGDRY--FLKAIDQYWHEDCLSCDLCGCRLGEVGRRL 71
Query: 77 FVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVP 134
+ + G+ C+RDY+RLFG C C+ + + MR K+K+YH++CF C C K
Sbjct: 72 YYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCV 131
Query: 135 GDEFALREDGLFCKDD 150
GD + L + C+ D
Sbjct: 132 GDRYLLINSDIVCEQD 147
Score = 106 (42.4 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 34/104 (32%), Positives = 46/104 (44%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDE-NCTCFVRDGKTYCKRDYV 62
L C GC I D+Y L+ A D WH CL C C L E + + G+ C+RDY+
Sbjct: 27 LLTCGGCQQNIGDRYFLK-AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYL 85
Query: 63 SSEKNQFLDENCTCFVRDGK-TYCKRDYV-RLFGTKCEKCNLNF 104
L +C +R + T +D V L KC C +F
Sbjct: 86 RLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHF 129
>UNIPROTKB|F1LNA1 [details] [associations]
symbol:Lmo2 "Protein Lmo2" species:10116 "Rattus
norvegicus" [GO:0000977 "RNA polymerase II regulatory region
sequence-specific DNA binding" evidence=IEA] [GO:0001102 "RNA
polymerase II activating transcription factor binding"
evidence=IEA] [GO:0001190 "RNA polymerase II transcription factor
binding transcription factor activity involved in positive
regulation of transcription" evidence=IEA] [GO:0001228 "RNA
polymerase II transcription regulatory region sequence-specific DNA
binding transcription factor activity involved in positive
regulation of transcription" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0005667 "transcription factor complex"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0035162 "embryonic hemopoiesis" evidence=IEA] [GO:0042789 "mRNA
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043425 "bHLH transcription factor binding" evidence=IEA]
[GO:0045647 "negative regulation of erythrocyte differentiation"
evidence=IEA] [GO:0048037 "cofactor binding" evidence=IEA]
[GO:0070888 "E-box binding" evidence=IEA] [GO:0097067 "cellular
response to thyroid hormone stimulus" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
RGD:1307101 GO:GO:0046872 GO:GO:0008270 GO:GO:0003682 GO:GO:0005667
Gene3D:2.10.110.10 GO:GO:0048037 GO:GO:0001190
GeneTree:ENSGT00680000099670 GO:GO:0000977 GO:GO:0042789
GO:GO:0070888 GO:GO:0035162 GO:GO:0097067 GO:GO:0045647
GO:GO:0001228 CTD:4005 KO:K15612 IPI:IPI00373656
RefSeq:NP_001032435.2 UniGene:Rn.155591 ProteinModelPortal:F1LNA1
SMR:F1LNA1 Ensembl:ENSRNOT00000012625 GeneID:362176 KEGG:rno:362176
NextBio:678912 ArrayExpress:F1LNA1 Uniprot:F1LNA1
Length = 220
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 40/136 (29%), Positives = 64/136 (47%)
Query: 19 ILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK-NQFLDE-NCTC 76
+L++ P L L C C Q + + F++ Y D +S + L E
Sbjct: 82 VLQIPPSL------LTCGGCQQNIGDRY--FLKAIDQYWHEDCLSCDLCGCRLGEVGRRL 133
Query: 77 FVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVP 134
+ + G+ C+RDY+RLFG C C+ + + MR K+K+YH++CF C C K
Sbjct: 134 YYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCV 193
Query: 135 GDEFALREDGLFCKDD 150
GD + L + C+ D
Sbjct: 194 GDRYLLINSDIVCEQD 209
Score = 106 (42.4 bits), Expect = 0.00020, P = 0.00020
Identities = 34/104 (32%), Positives = 46/104 (44%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDE-NCTCFVRDGKTYCKRDYV 62
L C GC I D+Y L+ A D WH CL C C L E + + G+ C+RDY+
Sbjct: 89 LLTCGGCQQNIGDRYFLK-AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYL 147
Query: 63 SSEKNQFLDENCTCFVRDGK-TYCKRDYV-RLFGTKCEKCNLNF 104
L +C +R + T +D V L KC C +F
Sbjct: 148 RLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHF 191
>ZFIN|ZDB-GENE-980526-419 [details] [associations]
symbol:lmo2 "LIM domain only 2 (rhombotin-like 1)"
species:7955 "Danio rerio" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0061304 "retinal blood vessel morphogenesis"
evidence=IMP] [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA;ISS] [GO:0030218 "erythrocyte
differentiation" evidence=IGI] [GO:0035162 "embryonic hemopoiesis"
evidence=IMP] [GO:0001568 "blood vessel development" evidence=IMP]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
ZFIN:ZDB-GENE-980526-419 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
Gene3D:2.10.110.10 GO:GO:0030218 GeneTree:ENSGT00680000099670
GO:GO:0035162 HSSP:P25801 GO:GO:0061304 HOGENOM:HOG000232175
HOVERGEN:HBG054231 CTD:4005 eggNOG:NOG319108 KO:K15612 OMA:CEKRIRA
OrthoDB:EOG4001KG EMBL:AF191560 EMBL:CT025900 EMBL:BC093136
IPI:IPI00500159 RefSeq:NP_571186.1 UniGene:Dr.79808
ProteinModelPortal:Q9PTJ3 SMR:Q9PTJ3 STRING:Q9PTJ3
Ensembl:ENSDART00000134247 GeneID:30332 KEGG:dre:30332
InParanoid:Q567L0 NextBio:20806764 Bgee:Q9PTJ3 Uniprot:Q9PTJ3
Length = 159
Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 37/129 (28%), Positives = 61/129 (47%)
Query: 26 LEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK-NQFLDE-NCTCFVRDGKT 83
L+ + L C C Q + + F++ + Y D +S + L E + + G+
Sbjct: 21 LQMPPSLLTCGGCQQSIGDRF--FLKAIEQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRK 78
Query: 84 YCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALR 141
C+RDY+RLFG C C + + MR ++K+YH++CF C C K GD + L
Sbjct: 79 LCRRDYLRLFGQDGLCASCEKRIRAFEMTMRVRDKVYHLECFKCAACQKHFCVGDRYLLI 138
Query: 142 EDGLFCKDD 150
+ C+ D
Sbjct: 139 NSDIVCEQD 147
Score = 101 (40.6 bits), Expect = 0.00026, P = 0.00026
Identities = 33/104 (31%), Positives = 46/104 (44%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDE-NCTCFVRDGKTYCKRDYV 62
L C GC I D++ L+ A + WH CL C C L E + + G+ C+RDY+
Sbjct: 27 LLTCGGCQQSIGDRFFLK-AIEQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYL 85
Query: 63 SSEKNQFLDENCTCFVRDGK-TYCKRDYV-RLFGTKCEKCNLNF 104
L +C +R + T RD V L KC C +F
Sbjct: 86 RLFGQDGLCASCEKRIRAFEMTMRVRDKVYHLECFKCAACQKHF 129
>UNIPROTKB|P91608 [details] [associations]
symbol:Bx "Dttg protein" species:7242 "Drosophila sp."
[GO:0002121 "inter-male aggressive behavior" evidence=IMP]
[GO:0005634 "nucleus" evidence=NAS] [GO:0006911 "phagocytosis,
engulfment" evidence=IMP] [GO:0007476 "imaginal disc-derived wing
morphogenesis" evidence=IGI;IMP] [GO:0035218 "leg disc development"
evidence=IMP] [GO:0036011 "imaginal disc-derived leg segmentation"
evidence=IMP] [GO:0042220 "response to cocaine" evidence=IMP]
[GO:0045475 "locomotor rhythm" evidence=IMP] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
GO:GO:0005634 GO:GO:0006911 GO:GO:0046872 GO:GO:0042220
GO:GO:0008270 Gene3D:2.10.110.10 GO:GO:0002121 GO:GO:0045475
GO:GO:0007476 GO:GO:0036011 HSSP:P70662 EMBL:X83012
ProteinModelPortal:P91608 SMR:P91608 FlyBase:FBgn0000242
InParanoid:P91608 Uniprot:P91608
Length = 266
Score = 165 (63.1 bits), Expect = 3.0e-12, P = 3.0e-12
Identities = 30/80 (37%), Positives = 44/80 (55%)
Query: 75 TCFVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQL 132
T + + CKRDY+RLFG C C+ + VMRA+ +YH++CF C C +
Sbjct: 85 TLYTKGNLMLCKRDYLRLFGNTGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHRF 144
Query: 133 VPGDEFALREDGLFCKDDHE 152
GD F L E+ + C+ D+E
Sbjct: 145 CVGDRFYLCENKILCEYDYE 164
Score = 140 (54.3 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 39/115 (33%), Positives = 53/115 (46%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDE-NCTCFVRDGKTYCKRDYVSS 64
LC GCG I D+Y+LR A D+ WH CL+C C L E T + + CKRDY+
Sbjct: 44 LCAGCGKHIQDRYLLR-ALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYLRL 102
Query: 65 EKNQFLDENCTCFVRDGKTYCK-RDYV-RLFGTKCEKCNLNFKREDFVMRAKNKI 117
N C+ + + + R V L C++CN F D +NKI
Sbjct: 103 FGNTGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHRFCVGDRFYLCENKI 157
>UNIPROTKB|F1LMU8 [details] [associations]
symbol:Pdlim5 "PDZ and LIM domain protein 5" species:10116
"Rattus norvegicus" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0015629 "actin cytoskeleton" evidence=IEA] [GO:0030018 "Z disc"
evidence=IEA] Pfam:PF00595 Pfam:PF00412 InterPro:IPR001478
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50106
SMART:SM00132 SMART:SM00228 RGD:621076 GO:GO:0030018 GO:GO:0046872
GO:GO:0015629 GO:GO:0008270 Gene3D:2.10.110.10 SUPFAM:SSF50156
GeneTree:ENSGT00700000104411 IPI:IPI00210187 PRIDE:F1LMU8
Ensembl:ENSRNOT00000022387 ArrayExpress:F1LMU8 Uniprot:F1LMU8
Length = 559
Score = 135 (52.6 bits), Expect = 5.6e-12, Sum P(2) = 5.6e-12
Identities = 26/71 (36%), Positives = 35/71 (49%)
Query: 78 VRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDE 137
+ DG+ YC+ DY LFGT C C + D + A +H CF C VC + L G
Sbjct: 482 LEDGEPYCETDYYALFGTICRGCEFPIEAGDMFLEALGSTWHDTCFVCSVCCESL-EGQT 540
Query: 138 FALREDGLFCK 148
F ++D CK
Sbjct: 541 FFSKKDKPLCK 551
Score = 123 (48.4 bits), Expect = 8.0e-07, P = 8.0e-07
Identities = 34/119 (28%), Positives = 55/119 (46%)
Query: 35 CAECHQFLDENCTCFVRDGKTYCKRDYVSSE-KNQFLDENCTCFVRD-GKTYCKRDYVRL 92
CA C+Q + V GK++ ++ + KN FV + G YC+ Y +
Sbjct: 383 CAHCNQAI--RGPFLVALGKSWHPEEFNCAHCKNTMAYIG---FVEEKGALYCELCYEKF 437
Query: 93 FGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDH 151
F +C +C E V+ A + +HV CF CV CGK + + F L + +C+ D+
Sbjct: 438 FAPECGRCQRKILGE--VINALKQTWHVSCFVCVACGKP-IRNNVFHLEDGEPYCETDY 493
Score = 59 (25.8 bits), Expect = 5.6e-12, Sum P(2) = 5.6e-12
Identities = 17/61 (27%), Positives = 24/61 (39%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRD-GKTYCKRD 60
+R +C C I ++ VA WH CA C + FV + G YC+
Sbjct: 378 KRTPMCAHCNQAIRGPFL--VALGKSWHPEEFNCAHCKNTMAY--IGFVEEKGALYCELC 433
Query: 61 Y 61
Y
Sbjct: 434 Y 434
>RGD|621076 [details] [associations]
symbol:Pdlim5 "PDZ and LIM domain 5" species:10116 "Rattus
norvegicus" [GO:0003779 "actin binding" evidence=IDA] [GO:0005080
"protein kinase C binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005829 "cytosol" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0007507 "heart
development" evidence=NAS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0014069 "postsynaptic density" evidence=IDA]
[GO:0015629 "actin cytoskeleton" evidence=IEA;ISO] [GO:0016020
"membrane" evidence=IDA] [GO:0030018 "Z disc" evidence=IEA;ISO]
[GO:0030054 "cell junction" evidence=IEA] [GO:0030159 "receptor
signaling complex scaffold activity" evidence=NAS] [GO:0042805
"actinin binding" evidence=IDA] [GO:0045211 "postsynaptic membrane"
evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=IMP] [GO:0051963 "regulation of synapse assembly"
evidence=IDA] [GO:0061001 "regulation of dendritic spine
morphogenesis" evidence=IDA] Pfam:PF00595 Pfam:PF00412
InterPro:IPR001478 InterPro:IPR001781 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50106 SMART:SM00132 SMART:SM00228
RGD:621076 GO:GO:0005829 GO:GO:0005886 GO:GO:0003779 GO:GO:0005080
GO:GO:0014069 GO:GO:0007507 GO:GO:0030018 GO:GO:0016020
GO:GO:0046872 GO:GO:0015629 GO:GO:0030054 GO:GO:0045211
GO:GO:0008270 Gene3D:2.10.110.10 GO:GO:0051963 SUPFAM:SSF50156
GO:GO:0030159 GO:GO:0047485 GO:GO:0061001 GO:GO:0042805
eggNOG:NOG286537 HOGENOM:HOG000220936 HOVERGEN:HBG051478 CTD:10611
OrthoDB:EOG4FTW06 EMBL:U48247 IPI:IPI00210187 RefSeq:NP_445778.1
UniGene:Rn.210185 ProteinModelPortal:Q62920 SMR:Q62920
IntAct:Q62920 STRING:Q62920 PhosphoSite:Q62920 PRIDE:Q62920
GeneID:64353 KEGG:rno:64353 InParanoid:Q62920 NextBio:613036
ArrayExpress:Q62920 Genevestigator:Q62920
GermOnline:ENSRNOG00000016419 Uniprot:Q62920
Length = 591
Score = 135 (52.6 bits), Expect = 6.6e-12, Sum P(2) = 6.6e-12
Identities = 26/71 (36%), Positives = 35/71 (49%)
Query: 78 VRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDE 137
+ DG+ YC+ DY LFGT C C + D + A +H CF C VC + L G
Sbjct: 514 LEDGEPYCETDYYALFGTICRGCEFPIEAGDMFLEALGSTWHDTCFVCSVCCESL-EGQT 572
Query: 138 FALREDGLFCK 148
F ++D CK
Sbjct: 573 FFSKKDKPLCK 583
Score = 123 (48.4 bits), Expect = 8.7e-07, P = 8.7e-07
Identities = 34/119 (28%), Positives = 55/119 (46%)
Query: 35 CAECHQFLDENCTCFVRDGKTYCKRDYVSSE-KNQFLDENCTCFVRD-GKTYCKRDYVRL 92
CA C+Q + V GK++ ++ + KN FV + G YC+ Y +
Sbjct: 415 CAHCNQAI--RGPFLVALGKSWHPEEFNCAHCKNTMAYIG---FVEEKGALYCELCYEKF 469
Query: 93 FGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDH 151
F +C +C E V+ A + +HV CF CV CGK + + F L + +C+ D+
Sbjct: 470 FAPECGRCQRKILGE--VINALKQTWHVSCFVCVACGKP-IRNNVFHLEDGEPYCETDY 525
Score = 59 (25.8 bits), Expect = 6.6e-12, Sum P(2) = 6.6e-12
Identities = 17/61 (27%), Positives = 24/61 (39%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRD-GKTYCKRD 60
+R +C C I ++ VA WH CA C + FV + G YC+
Sbjct: 410 KRTPMCAHCNQAIRGPFL--VALGKSWHPEEFNCAHCKNTMAY--IGFVEEKGALYCELC 465
Query: 61 Y 61
Y
Sbjct: 466 Y 466
>UNIPROTKB|Q62920 [details] [associations]
symbol:Pdlim5 "PDZ and LIM domain protein 5" species:10116
"Rattus norvegicus" [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00595 Pfam:PF00412 InterPro:IPR001478 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50106 SMART:SM00132
SMART:SM00228 RGD:621076 GO:GO:0005829 GO:GO:0005886 GO:GO:0003779
GO:GO:0005080 GO:GO:0014069 GO:GO:0007507 GO:GO:0030018
GO:GO:0016020 GO:GO:0046872 GO:GO:0015629 GO:GO:0030054
GO:GO:0045211 GO:GO:0008270 Gene3D:2.10.110.10 GO:GO:0051963
SUPFAM:SSF50156 GO:GO:0030159 GO:GO:0047485 GO:GO:0061001
GO:GO:0042805 eggNOG:NOG286537 HOGENOM:HOG000220936
HOVERGEN:HBG051478 CTD:10611 OrthoDB:EOG4FTW06 EMBL:U48247
IPI:IPI00210187 RefSeq:NP_445778.1 UniGene:Rn.210185
ProteinModelPortal:Q62920 SMR:Q62920 IntAct:Q62920 STRING:Q62920
PhosphoSite:Q62920 PRIDE:Q62920 GeneID:64353 KEGG:rno:64353
InParanoid:Q62920 NextBio:613036 ArrayExpress:Q62920
Genevestigator:Q62920 GermOnline:ENSRNOG00000016419 Uniprot:Q62920
Length = 591
Score = 135 (52.6 bits), Expect = 6.6e-12, Sum P(2) = 6.6e-12
Identities = 26/71 (36%), Positives = 35/71 (49%)
Query: 78 VRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDE 137
+ DG+ YC+ DY LFGT C C + D + A +H CF C VC + L G
Sbjct: 514 LEDGEPYCETDYYALFGTICRGCEFPIEAGDMFLEALGSTWHDTCFVCSVCCESL-EGQT 572
Query: 138 FALREDGLFCK 148
F ++D CK
Sbjct: 573 FFSKKDKPLCK 583
Score = 123 (48.4 bits), Expect = 8.7e-07, P = 8.7e-07
Identities = 34/119 (28%), Positives = 55/119 (46%)
Query: 35 CAECHQFLDENCTCFVRDGKTYCKRDYVSSE-KNQFLDENCTCFVRD-GKTYCKRDYVRL 92
CA C+Q + V GK++ ++ + KN FV + G YC+ Y +
Sbjct: 415 CAHCNQAI--RGPFLVALGKSWHPEEFNCAHCKNTMAYIG---FVEEKGALYCELCYEKF 469
Query: 93 FGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDH 151
F +C +C E V+ A + +HV CF CV CGK + + F L + +C+ D+
Sbjct: 470 FAPECGRCQRKILGE--VINALKQTWHVSCFVCVACGKP-IRNNVFHLEDGEPYCETDY 525
Score = 59 (25.8 bits), Expect = 6.6e-12, Sum P(2) = 6.6e-12
Identities = 17/61 (27%), Positives = 24/61 (39%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRD-GKTYCKRD 60
+R +C C I ++ VA WH CA C + FV + G YC+
Sbjct: 410 KRTPMCAHCNQAIRGPFL--VALGKSWHPEEFNCAHCKNTMAY--IGFVEEKGALYCELC 465
Query: 61 Y 61
Y
Sbjct: 466 Y 466
>UNIPROTKB|F5H7Y0 [details] [associations]
symbol:PDLIM5 "PDZ and LIM domain protein 5" species:9606
"Homo sapiens" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003779 "actin binding" evidence=IEA] [GO:0005080 "protein
kinase C binding" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0014069 "postsynaptic density" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0030018 "Z disc" evidence=IEA]
[GO:0042805 "actinin binding" evidence=IEA] [GO:0047485 "protein
N-terminus binding" evidence=IEA] [GO:0051963 "regulation of
synapse assembly" evidence=IEA] [GO:0061001 "regulation of
dendritic spine morphogenesis" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
GO:GO:0005829 GO:GO:0014069 GO:GO:0030018 GO:GO:0046872
GO:GO:0008270 Gene3D:2.10.110.10 GO:GO:0051963 GO:GO:0061001
EMBL:AC093778 EMBL:AC108067 EMBL:AC109925 HGNC:HGNC:17468
ChiTaRS:PDLIM5 IPI:IPI00973432 ProteinModelPortal:F5H7Y0 SMR:F5H7Y0
Ensembl:ENST00000542407 UCSC:uc003htj.3 ArrayExpress:F5H7Y0
Bgee:F5H7Y0 Uniprot:F5H7Y0
Length = 474
Score = 133 (51.9 bits), Expect = 7.0e-12, Sum P(2) = 7.0e-12
Identities = 26/71 (36%), Positives = 35/71 (49%)
Query: 78 VRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDE 137
+ DG+ YC+ DY LFGT C C + D + A +H CF C VC + L G
Sbjct: 397 LEDGEPYCETDYYALFGTICHGCEFPIEAGDMFLEALGYTWHDTCFVCSVCCESL-EGQT 455
Query: 138 FALREDGLFCK 148
F ++D CK
Sbjct: 456 FFSKKDKPLCK 466
Score = 123 (48.4 bits), Expect = 6.3e-07, P = 6.3e-07
Identities = 34/119 (28%), Positives = 55/119 (46%)
Query: 35 CAECHQFLDENCTCFVRDGKTYCKRDYVSSE-KNQFLDENCTCFVRD-GKTYCKRDYVRL 92
CA C+Q + V GK++ ++ + KN FV + G YC+ Y +
Sbjct: 298 CAHCNQVI--RGPFLVALGKSWHPEEFNCAHCKNTMAYIG---FVEEKGALYCELCYEKF 352
Query: 93 FGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDH 151
F +C +C E V+ A + +HV CF CV CGK + + F L + +C+ D+
Sbjct: 353 FAPECGRCQRKILGE--VISALKQTWHVSCFVCVACGKP-IRNNVFHLEDGEPYCETDY 408
Score = 58 (25.5 bits), Expect = 7.0e-12, Sum P(2) = 7.0e-12
Identities = 17/61 (27%), Positives = 24/61 (39%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRD-GKTYCKRD 60
+R +C C I ++ VA WH CA C + FV + G YC+
Sbjct: 293 KRTPMCAHCNQVIRGPFL--VALGKSWHPEEFNCAHCKNTMAY--IGFVEEKGALYCELC 348
Query: 61 Y 61
Y
Sbjct: 349 Y 349
>ZFIN|ZDB-GENE-081105-159 [details] [associations]
symbol:si:rp71-15d4.1 "si:rp71-15d4.1" species:7955
"Danio rerio" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
ZFIN:ZDB-GENE-081105-159 GO:GO:0046872 GO:GO:0008270
Gene3D:2.10.110.10 GeneTree:ENSGT00700000104021 EMBL:BX901930
IPI:IPI00890407 Ensembl:ENSDART00000139647 Uniprot:F1QK19
Length = 416
Score = 128 (50.1 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 35/120 (29%), Positives = 53/120 (44%)
Query: 32 CLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVR 91
C C +C + T G+ + +V S + L C F RDGK YC++DY +
Sbjct: 183 CASCGKC--IAGKMITAL---GQVWHPEHFVCSACREELG-TCGFFERDGKPYCEKDYQK 236
Query: 92 LFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGL-FCKDD 150
LF +C C + ++ A ++ +H + F C CG G E L DG +C D
Sbjct: 237 LFSPRCAYCKGPITQN--ILTAMDQTWHPEHFFCCHCGDLF--GPEGYLERDGKPYCSRD 292
Score = 114 (45.2 bits), Expect = 9.1e-12, Sum P(2) = 9.1e-12
Identities = 24/57 (42%), Positives = 29/57 (50%)
Query: 79 RDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPG 135
RDGK YC RD+ LF KC C K E++ + A N +H CF C C K G
Sbjct: 283 RDGKPYCSRDFYCLFAPKCSGCGEPVK-ENY-LSAANGTWHPDCFVCSDCLKPFTDG 337
Score = 93 (37.8 bits), Expect = 9.1e-12, Sum P(2) = 9.1e-12
Identities = 20/55 (36%), Positives = 26/55 (47%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
C CG I + I + WH C+ C + L C F RDGK YC++DY
Sbjct: 183 CASCGKCIAGKMITALGQ--VWHPEHFVCSACREELG-TCGFFERDGKPYCEKDY 234
>UNIPROTKB|F1RWW4 [details] [associations]
symbol:PDLIM5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030018 "Z disc" evidence=IEA] [GO:0015629 "actin
cytoskeleton" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478
PROSITE:PS50023 SMART:SM00132 GO:GO:0030018 GO:GO:0046872
GO:GO:0015629 GO:GO:0008270 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104411 EMBL:CU463267 EMBL:CU861492
Ensembl:ENSSSCT00000010065 OMA:SSPEKYH Uniprot:F1RWW4
Length = 540
Score = 133 (51.9 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 26/71 (36%), Positives = 35/71 (49%)
Query: 78 VRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDE 137
+ DG+ YC+ DY LFGT C C + D + A +H CF C VC + L G
Sbjct: 463 LEDGEPYCETDYYALFGTICHGCEFPIEAGDMFLEALGYTWHDTCFVCSVCCESL-EGQT 521
Query: 138 FALREDGLFCK 148
F ++D CK
Sbjct: 522 FFSKKDKPLCK 532
Score = 58 (25.5 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 17/61 (27%), Positives = 24/61 (39%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRD-GKTYCKRD 60
+R +C C I ++ VA WH CA C + FV + G YC+
Sbjct: 360 KRTPMCAHCNQVIRGPFL--VALGKSWHPEEFNCAHCKNTMAY--IGFVEEQGALYCELC 415
Query: 61 Y 61
Y
Sbjct: 416 Y 416
>MGI|MGI:1927489 [details] [associations]
symbol:Pdlim5 "PDZ and LIM domain 5" species:10090 "Mus
musculus" [GO:0003779 "actin binding" evidence=ISO] [GO:0005080
"protein kinase C binding" evidence=ISO] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005829 "cytosol" evidence=ISO] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0014069 "postsynaptic density" evidence=ISO] [GO:0016020
"membrane" evidence=ISO] [GO:0030018 "Z disc" evidence=IDA]
[GO:0030054 "cell junction" evidence=IEA] [GO:0042805 "actinin
binding" evidence=ISO] [GO:0043005 "neuron projection"
evidence=IEA] [GO:0045202 "synapse" evidence=IEA] [GO:0045211
"postsynaptic membrane" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=ISO] [GO:0051963 "regulation of synapse assembly"
evidence=ISO] [GO:0061001 "regulation of dendritic spine
morphogenesis" evidence=ISO] Pfam:PF00595 Pfam:PF00412
InterPro:IPR001478 InterPro:IPR001781 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50106 SMART:SM00132 SMART:SM00228
MGI:MGI:1927489 GO:GO:0005829 GO:GO:0005886 GO:GO:0014069
GO:GO:0030018 GO:GO:0046872 GO:GO:0015629 GO:GO:0030054
GO:GO:0045211 GO:GO:0008270 Gene3D:2.10.110.10 GO:GO:0051963
SUPFAM:SSF50156 GO:GO:0061001 eggNOG:NOG286537 HOGENOM:HOG000220936
HOVERGEN:HBG051478 GeneTree:ENSGT00700000104411 CTD:10611
OMA:SGLHANA OrthoDB:EOG4FTW06 EMBL:AB016586 EMBL:AB016587
EMBL:AB016588 EMBL:AK147999 EMBL:BC037476 IPI:IPI00415684
IPI:IPI00415685 IPI:IPI00828969 RefSeq:NP_001177781.1
RefSeq:NP_001177783.1 RefSeq:NP_001177784.1 RefSeq:NP_001177785.1
RefSeq:NP_062782.2 UniGene:Mm.117709 PDB:1WF7 PDBsum:1WF7
ProteinModelPortal:Q8CI51 SMR:Q8CI51 IntAct:Q8CI51 STRING:Q8CI51
PhosphoSite:Q8CI51 PaxDb:Q8CI51 PRIDE:Q8CI51
Ensembl:ENSMUST00000029941 Ensembl:ENSMUST00000168967 GeneID:56376
KEGG:mmu:56376 UCSC:uc008ron.2 UCSC:uc012cyt.1 InParanoid:Q3UGD0
EvolutionaryTrace:Q8CI51 NextBio:312444 Bgee:Q8CI51
CleanEx:MM_PDLIM5 Genevestigator:Q8CI51
GermOnline:ENSMUSG00000028273 Uniprot:Q8CI51
Length = 591
Score = 133 (51.9 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 26/71 (36%), Positives = 35/71 (49%)
Query: 78 VRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDE 137
+ DG+ YC+ DY LFGT C C + D + A +H CF C VC + L G
Sbjct: 514 LEDGEPYCETDYYALFGTICRGCEFPIEAGDMFLEALGYTWHDTCFVCSVCCESL-EGQT 572
Query: 138 FALREDGLFCK 148
F ++D CK
Sbjct: 573 FFSKKDKPLCK 583
Score = 124 (48.7 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 34/119 (28%), Positives = 55/119 (46%)
Query: 35 CAECHQFLDENCTCFVRDGKTYCKRDYVSSE-KNQFLDENCTCFVRD-GKTYCKRDYVRL 92
CA C+Q + V GK++ ++ + KN FV + G YC+ Y +
Sbjct: 415 CAHCNQVI--RGPFLVALGKSWHPEEFNCAHCKNTMAYIG---FVEEKGALYCELCYEKF 469
Query: 93 FGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDH 151
F +C +C E V+ A + +HV CF CV CGK + + F L + +C+ D+
Sbjct: 470 FAPECGRCQRKILGE--VINALKQTWHVSCFVCVACGKP-IRNNVFHLEDGEPYCETDY 525
Score = 58 (25.5 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 17/61 (27%), Positives = 24/61 (39%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRD-GKTYCKRD 60
+R +C C I ++ VA WH CA C + FV + G YC+
Sbjct: 410 KRTPMCAHCNQVIRGPFL--VALGKSWHPEEFNCAHCKNTMAY--IGFVEEKGALYCELC 465
Query: 61 Y 61
Y
Sbjct: 466 Y 466
>UNIPROTKB|Q96HC4 [details] [associations]
symbol:PDLIM5 "PDZ and LIM domain protein 5" species:9606
"Homo sapiens" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0030054 "cell
junction" evidence=IEA] [GO:0045211 "postsynaptic membrane"
evidence=IEA] [GO:0030018 "Z disc" evidence=IEA] [GO:0047485
"protein N-terminus binding" evidence=IEA] [GO:0003779 "actin
binding" evidence=ISS] [GO:0005829 "cytosol" evidence=ISS]
[GO:0005080 "protein kinase C binding" evidence=ISS] [GO:0042805
"actinin binding" evidence=ISS] [GO:0014069 "postsynaptic density"
evidence=ISS] [GO:0051963 "regulation of synapse assembly"
evidence=ISS] [GO:0061001 "regulation of dendritic spine
morphogenesis" evidence=ISS] [GO:0016020 "membrane" evidence=ISS]
[GO:0015629 "actin cytoskeleton" evidence=IDA] Pfam:PF00595
Pfam:PF00412 InterPro:IPR001478 InterPro:IPR001781 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50106 SMART:SM00132 SMART:SM00228
GO:GO:0005829 GO:GO:0005886 GO:GO:0003779 GO:GO:0005080
GO:GO:0014069 GO:GO:0030018 GO:GO:0016020 GO:GO:0046872
GO:GO:0015629 GO:GO:0030054 GO:GO:0045211 GO:GO:0008270
Gene3D:2.10.110.10 GO:GO:0051963 EMBL:CH471057 SUPFAM:SSF50156
GO:GO:0061001 GO:GO:0042805 eggNOG:NOG286537 HOGENOM:HOG000220936
EMBL:AF061258 EMBL:AY345240 EMBL:AY598328 EMBL:BT007328
EMBL:AK291624 EMBL:AK291898 EMBL:CR610626 EMBL:AL833438
EMBL:AC093778 EMBL:AC108067 EMBL:AC109925 EMBL:BC017902
EMBL:BC008741 IPI:IPI00007935 IPI:IPI00103146 IPI:IPI00553102
IPI:IPI00964290 RefSeq:NP_001011515.1 RefSeq:NP_001011516.1
RefSeq:NP_001243358.1 RefSeq:NP_006448.4 UniGene:Hs.480311
UniGene:Hs.732677 PDB:2DAR PDB:2UZC PDBsum:2DAR PDBsum:2UZC
ProteinModelPortal:Q96HC4 SMR:Q96HC4 IntAct:Q96HC4
MINT:MINT-2868566 STRING:Q96HC4 PhosphoSite:Q96HC4 DMDM:209572779
PaxDb:Q96HC4 PRIDE:Q96HC4 DNASU:10611 Ensembl:ENST00000317968
Ensembl:ENST00000318007 Ensembl:ENST00000359265
Ensembl:ENST00000380180 Ensembl:ENST00000437932
Ensembl:ENST00000508216 GeneID:10611 KEGG:hsa:10611 UCSC:uc003htf.3
UCSC:uc003htg.3 UCSC:uc003hth.3 UCSC:uc003hti.3 CTD:10611
GeneCards:GC04P095373 H-InvDB:HIX0004384 H-InvDB:HIX0031573
HGNC:HGNC:17468 HPA:CAB013511 HPA:HPA016740 HPA:HPA020026
MIM:605904 neXtProt:NX_Q96HC4 PharmGKB:PA134917248
HOVERGEN:HBG056486 InParanoid:Q96HC4 OMA:SGLHANA OrthoDB:EOG4FTW06
PhylomeDB:Q96HC4 ChiTaRS:PDLIM5 EvolutionaryTrace:Q96HC4
GenomeRNAi:10611 NextBio:40303 ArrayExpress:Q96HC4 Bgee:Q96HC4
CleanEx:HS_PDLIM5 Genevestigator:Q96HC4 GermOnline:ENSG00000163110
Uniprot:Q96HC4
Length = 596
Score = 133 (51.9 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 26/71 (36%), Positives = 35/71 (49%)
Query: 78 VRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDE 137
+ DG+ YC+ DY LFGT C C + D + A +H CF C VC + L G
Sbjct: 519 LEDGEPYCETDYYALFGTICHGCEFPIEAGDMFLEALGYTWHDTCFVCSVCCESL-EGQT 577
Query: 138 FALREDGLFCK 148
F ++D CK
Sbjct: 578 FFSKKDKPLCK 588
Score = 123 (48.4 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 34/119 (28%), Positives = 55/119 (46%)
Query: 35 CAECHQFLDENCTCFVRDGKTYCKRDYVSSE-KNQFLDENCTCFVRD-GKTYCKRDYVRL 92
CA C+Q + V GK++ ++ + KN FV + G YC+ Y +
Sbjct: 420 CAHCNQVI--RGPFLVALGKSWHPEEFNCAHCKNTMAYIG---FVEEKGALYCELCYEKF 474
Query: 93 FGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDH 151
F +C +C E V+ A + +HV CF CV CGK + + F L + +C+ D+
Sbjct: 475 FAPECGRCQRKILGE--VISALKQTWHVSCFVCVACGKP-IRNNVFHLEDGEPYCETDY 530
Score = 58 (25.5 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 17/61 (27%), Positives = 24/61 (39%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRD-GKTYCKRD 60
+R +C C I ++ VA WH CA C + FV + G YC+
Sbjct: 415 KRTPMCAHCNQVIRGPFL--VALGKSWHPEEFNCAHCKNTMAY--IGFVEEKGALYCELC 470
Query: 61 Y 61
Y
Sbjct: 471 Y 471
>UNIPROTKB|D6RB78 [details] [associations]
symbol:PDLIM5 "PDZ and LIM domain protein 5" species:9606
"Homo sapiens" [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00595 Pfam:PF00412 InterPro:IPR001478 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50106 SMART:SM00132
SMART:SM00228 GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10
SUPFAM:SSF50156 HOGENOM:HOG000220936 EMBL:AC093778 EMBL:AC108067
EMBL:AC109925 HGNC:HGNC:17468 ChiTaRS:PDLIM5 IPI:IPI00966603
ProteinModelPortal:D6RB78 SMR:D6RB78 Ensembl:ENST00000514743
UCSC:uc003htk.3 ArrayExpress:D6RB78 Bgee:D6RB78 Uniprot:D6RB78
Length = 625
Score = 133 (51.9 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 26/71 (36%), Positives = 35/71 (49%)
Query: 78 VRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDE 137
+ DG+ YC+ DY LFGT C C + D + A +H CF C VC + L G
Sbjct: 548 LEDGEPYCETDYYALFGTICHGCEFPIEAGDMFLEALGYTWHDTCFVCSVCCESL-EGQT 606
Query: 138 FALREDGLFCK 148
F ++D CK
Sbjct: 607 FFSKKDKPLCK 617
Score = 123 (48.4 bits), Expect = 9.4e-07, P = 9.4e-07
Identities = 34/119 (28%), Positives = 55/119 (46%)
Query: 35 CAECHQFLDENCTCFVRDGKTYCKRDYVSSE-KNQFLDENCTCFVRD-GKTYCKRDYVRL 92
CA C+Q + V GK++ ++ + KN FV + G YC+ Y +
Sbjct: 449 CAHCNQVI--RGPFLVALGKSWHPEEFNCAHCKNTMAYIG---FVEEKGALYCELCYEKF 503
Query: 93 FGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDH 151
F +C +C E V+ A + +HV CF CV CGK + + F L + +C+ D+
Sbjct: 504 FAPECGRCQRKILGE--VISALKQTWHVSCFVCVACGKP-IRNNVFHLEDGEPYCETDY 559
Score = 58 (25.5 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 17/61 (27%), Positives = 24/61 (39%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRD-GKTYCKRD 60
+R +C C I ++ VA WH CA C + FV + G YC+
Sbjct: 444 KRTPMCAHCNQVIRGPFL--VALGKSWHPEEFNCAHCKNTMAY--IGFVEEKGALYCELC 499
Query: 61 Y 61
Y
Sbjct: 500 Y 500
>WB|WBGene00002988 [details] [associations]
symbol:lim-6 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0030421 "defecation"
evidence=IMP] [GO:0060756 "foraging behavior" evidence=IMP]
[GO:0030182 "neuron differentiation" evidence=IMP] [GO:0007409
"axonogenesis" evidence=IMP] [GO:0009449 "gamma-aminobutyric acid
biosynthetic process" evidence=IMP] [GO:0010468 "regulation of gene
expression" evidence=IMP] [GO:0061038 "uterus morphogenesis"
evidence=IMP] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0007409 GO:GO:0010468 GO:GO:0030421
GeneTree:ENSGT00700000104050 GO:GO:0009449 eggNOG:NOG243427
GO:GO:0061038 EMBL:FO080324 GeneID:180459 KEGG:cel:CELE_K03E6.1
CTD:180459 GO:GO:0060756 RefSeq:NP_001256980.1
ProteinModelPortal:Q21192 SMR:Q21192 PaxDb:Q21192
EnsemblMetazoa:K03E6.1b UCSC:K03E6.1 WormBase:K03E6.1b
HOGENOM:HOG000018451 InParanoid:Q21192 OMA:HGNIYCE NextBio:909480
ArrayExpress:Q21192 Uniprot:Q21192
Length = 316
Score = 161 (61.7 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 27/79 (34%), Positives = 42/79 (53%)
Query: 76 CFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPG 135
CF R G YC+ D+ L+G +C +C D V R YH QCF C C + G
Sbjct: 82 CFSRHGNIYCEHDHQMLYGKRCRRCMTLLLPTDIVHRVHFMYYHAQCFSCCSCQRPFNLG 141
Query: 136 DEFALREDGLFCKDDHEGM 154
DE+ + + +FC++D++ +
Sbjct: 142 DEYHVFDGEVFCRNDYQSI 160
Score = 134 (52.2 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 26/56 (46%), Positives = 32/56 (57%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
LC GCG I D+YI RV D +H +CLRC+ C L CF R G YC+ D+
Sbjct: 41 LCSGCGCLIKDRYIYRVMED-SYHESCLRCSCCQLSLSSFKKCFSRHGNIYCEHDH 95
>MGI|MGI:1914649 [details] [associations]
symbol:Pdlim7 "PDZ and LIM domain 7" species:10090 "Mus
musculus" [GO:0001503 "ossification" evidence=IEA] [GO:0001725
"stress fiber" evidence=IDA] [GO:0001726 "ruffle" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005856 "cytoskeleton" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0030036 "actin cytoskeleton
organization" evidence=IPI] [GO:0030154 "cell differentiation"
evidence=IEA] [GO:0045669 "positive regulation of osteoblast
differentiation" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] Pfam:PF00595 Pfam:PF00412 InterPro:IPR001478
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50106
SMART:SM00132 SMART:SM00228 MGI:MGI:1914649 GO:GO:0007275
GO:GO:0005737 GO:GO:0030154 GO:GO:0046872 GO:GO:0030036
GO:GO:0008270 GO:GO:0005925 Gene3D:2.10.110.10 GO:GO:0001725
GO:GO:0001726 GO:GO:0045669 SUPFAM:SSF50156 GO:GO:0001503
eggNOG:NOG286537 HOGENOM:HOG000220936 HOVERGEN:HBG051478
GeneTree:ENSGT00700000104411 CTD:9260 OMA:ATPTPMQ ChiTaRS:PDLIM7
EMBL:AK003338 EMBL:AK010141 EMBL:AK003019 EMBL:AK167476
EMBL:BC045528 EMBL:BC049565 IPI:IPI00130607 IPI:IPI00315878
IPI:IPI00404528 RefSeq:NP_001107559.1 RefSeq:NP_001107560.1
RefSeq:NP_080407.3 UniGene:Mm.275648 ProteinModelPortal:Q3TJD7
SMR:Q3TJD7 STRING:Q3TJD7 PhosphoSite:Q3TJD7 PaxDb:Q3TJD7
PRIDE:Q3TJD7 Ensembl:ENSMUST00000046246 Ensembl:ENSMUST00000069929
Ensembl:ENSMUST00000155098 GeneID:67399 KEGG:mmu:67399
InParanoid:Q3TJD7 NextBio:324470 Bgee:Q3TJD7 CleanEx:MM_PDLIM7
Genevestigator:Q3TJD7 GermOnline:ENSMUSG00000021493 Uniprot:Q3TJD7
Length = 457
Score = 138 (53.6 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 26/76 (34%), Positives = 38/76 (50%)
Query: 73 NCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQL 132
N ++ +G YC+RDY ++FGTKC C+ D + A +H CF C +C L
Sbjct: 376 NRAFYMEEGAPYCERDYEKMFGTKCRGCDFKIDAGDRFLEALGFSWHDTCFVCAICQINL 435
Query: 133 VPGDEFALREDGLFCK 148
G F ++D CK
Sbjct: 436 -EGKTFYSKKDKPLCK 450
Score = 132 (51.5 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 33/120 (27%), Positives = 50/120 (41%)
Query: 35 CAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFG 94
C +CH+ + V G Y ++V S+ + L+E F G +C Y +
Sbjct: 282 CHQCHKIIRGRY--LVALGHAYHPEEFVCSQCGKVLEEG-GFFEEKGAIFCPSCYDVRYA 338
Query: 95 TKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
C KC E +M A +HV CF C C K + F + E +C+ D+E M
Sbjct: 339 PNCAKCKKKITGE--IMHALKMTWHVHCFTCAAC-KTPIRNRAFYMEEGAPYCERDYEKM 395
Score = 48 (22.0 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 15/56 (26%), Positives = 24/56 (42%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+C C I +Y+ VA +H C++C + L+E F G +C Y
Sbjct: 281 VCHQCHKIIRGRYL--VALGHAYHPEEFVCSQCGKVLEEG-GFFEEKGAIFCPSCY 333
>RGD|628769 [details] [associations]
symbol:Pdlim7 "PDZ and LIM domain 7" species:10116 "Rattus
norvegicus" [GO:0001503 "ossification" evidence=IEA] [GO:0001725
"stress fiber" evidence=IEA;ISO] [GO:0001726 "ruffle"
evidence=IEA;ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0005925 "focal
adhesion" evidence=IEA;ISO] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0015629 "actin cytoskeleton" evidence=ISO]
[GO:0030036 "actin cytoskeleton organization" evidence=IEA;ISO]
[GO:0030054 "cell junction" evidence=ISO] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0045669 "positive regulation of
osteoblast differentiation" evidence=IDA] Pfam:PF00595 Pfam:PF00412
InterPro:IPR001478 InterPro:IPR001781 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50106 SMART:SM00132 SMART:SM00228
RGD:628769 GO:GO:0007275 GO:GO:0005737 GO:GO:0030154 GO:GO:0046872
GO:GO:0030036 GO:GO:0008270 GO:GO:0005925 Gene3D:2.10.110.10
GO:GO:0001725 GO:GO:0001726 GO:GO:0045669 SUPFAM:SSF50156
GO:GO:0001503 eggNOG:NOG286537 HOGENOM:HOG000220936
HOVERGEN:HBG051478 GeneTree:ENSGT00700000104411 CTD:9260
OMA:ATPTPMQ EMBL:AF095585 EMBL:BC078693 IPI:IPI00209358
RefSeq:NP_775148.1 UniGene:Rn.7274 ProteinModelPortal:Q9Z1Z9
SMR:Q9Z1Z9 STRING:Q9Z1Z9 PhosphoSite:Q9Z1Z9 PRIDE:Q9Z1Z9
Ensembl:ENSRNOT00000018899 GeneID:286908 KEGG:rno:286908
UCSC:RGD:628769 InParanoid:Q9Z1Z9 OrthoDB:EOG4XSKPZ NextBio:625011
ArrayExpress:Q9Z1Z9 Genevestigator:Q9Z1Z9
GermOnline:ENSRNOG00000013653 Uniprot:Q9Z1Z9
Length = 457
Score = 138 (53.6 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 26/76 (34%), Positives = 38/76 (50%)
Query: 73 NCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQL 132
N ++ +G YC+RDY ++FGTKC C+ D + A +H CF C +C L
Sbjct: 376 NRAFYMEEGAPYCERDYEKMFGTKCRGCDFKIDAGDRFLEALGFSWHDTCFVCAICQINL 435
Query: 133 VPGDEFALREDGLFCK 148
G F ++D CK
Sbjct: 436 -EGKTFYSKKDKPLCK 450
Score = 131 (51.2 bits), Expect = 8.1e-08, P = 8.1e-08
Identities = 33/120 (27%), Positives = 50/120 (41%)
Query: 35 CAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFG 94
C +CH+ + V G Y ++V S+ + L+E F G +C Y +
Sbjct: 282 CHQCHKIIRGRY--LVALGHAYHPEEFVCSQCGKVLEEG-GFFEEKGAIFCPSCYDVRYA 338
Query: 95 TKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
C KC E +M A +HV CF C C K + F + E +C+ D+E M
Sbjct: 339 PSCAKCKKKITGE--IMHALKMTWHVPCFTCAAC-KTPIRNRAFYMEEGAPYCERDYEKM 395
Score = 48 (22.0 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 15/56 (26%), Positives = 24/56 (42%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+C C I +Y+ VA +H C++C + L+E F G +C Y
Sbjct: 281 VCHQCHKIIRGRYL--VALGHAYHPEEFVCSQCGKVLEEG-GFFEEKGAIFCPSCY 333
>UNIPROTKB|H0YMA3 [details] [associations]
symbol:LHX6 "LIM/homeobox protein Lhx6" species:9606 "Homo
sapiens" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0021799 "cerebral cortex radially
oriented cell migration" evidence=IEA] [GO:0021800 "cerebral cortex
tangential migration" evidence=IEA] [GO:0021853 "cerebral cortex
GABAergic interneuron migration" evidence=IEA] [GO:0021877
"forebrain neuron fate commitment" evidence=IEA] [GO:0021884
"forebrain neuron development" evidence=IEA] [GO:0048469 "cell
maturation" evidence=IEA] Pfam:PF00412 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132 GO:GO:0046872
GO:GO:0008270 Gene3D:2.10.110.10 GO:GO:0021884 GO:GO:0021877
GO:GO:0021853 GO:GO:0021800 GO:GO:0048469 GO:GO:0021799
EMBL:AL162424 HGNC:HGNC:21735 Ensembl:ENST00000558672 Bgee:H0YMA3
Uniprot:H0YMA3
Length = 73
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 27/67 (40%), Positives = 38/67 (56%)
Query: 88 DYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFC 147
DY FGTKC +C D+V RA+ YH+ CF C C +QL G+EF L E+ + C
Sbjct: 2 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLC 61
Query: 148 KDDHEGM 154
+ ++ M
Sbjct: 62 RIHYDTM 68
>UNIPROTKB|G3MY19 [details] [associations]
symbol:PDLIM5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030018 "Z disc" evidence=IEA] [GO:0015629 "actin
cytoskeleton" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478
PROSITE:PS50023 SMART:SM00132 GO:GO:0030018 GO:GO:0046872
GO:GO:0015629 GO:GO:0008270 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104411 OMA:SSPEKYH EMBL:DAAA02016918
EMBL:DAAA02016919 EMBL:DAAA02016920 Ensembl:ENSBTAT00000064437
Uniprot:G3MY19
Length = 544
Score = 133 (51.9 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 26/71 (36%), Positives = 35/71 (49%)
Query: 78 VRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDE 137
+ DG+ YC+ DY LFGT C C + D + A +H CF C VC + L G
Sbjct: 467 LEDGEPYCETDYYALFGTICRGCEFPIEAGDMFLEALGYTWHDTCFVCSVCCESL-EGQT 525
Query: 138 FALREDGLFCK 148
F ++D CK
Sbjct: 526 FFSKKDKPLCK 536
Score = 129 (50.5 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 34/119 (28%), Positives = 55/119 (46%)
Query: 35 CAECHQFLDENCTCFVRDGKTYCKRDYVSSE-KNQFLDENCTCFVRD-GKTYCKRDYVRL 92
CA C+Q + V GK++ ++ + KN FV + G YC+ Y +
Sbjct: 367 CAHCNQVISRG-PFLVALGKSWHPEEFNCAHCKNTMAYIG---FVEEQGALYCELCYEKF 422
Query: 93 FGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDH 151
F +C +C E V+ A + +HV CF CV CGK + + F L + +C+ D+
Sbjct: 423 FAPECGRCQRKILGE--VINALKQTWHVSCFVCVACGKP-IRNNVFHLEDGEPYCETDY 478
Score = 55 (24.4 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 17/61 (27%), Positives = 24/61 (39%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRD-GKTYCKRD 60
+R +C C Q+ + VA WH CA C + FV + G YC+
Sbjct: 362 KRTPMCAHCN-QVISRGPFLVALGKSWHPEEFNCAHCKNTMAY--IGFVEEQGALYCELC 418
Query: 61 Y 61
Y
Sbjct: 419 Y 419
>UNIPROTKB|Q9NR12 [details] [associations]
symbol:PDLIM7 "PDZ and LIM domain protein 7" species:9606
"Homo sapiens" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0001503 "ossification" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0001725 "stress fiber"
evidence=IEA] [GO:0001726 "ruffle" evidence=IEA] [GO:0030036 "actin
cytoskeleton organization" evidence=IEA] [GO:0045669 "positive
regulation of osteoblast differentiation" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006898 "receptor-mediated
endocytosis" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005925 "focal adhesion" evidence=IDA]
[GO:0015629 "actin cytoskeleton" evidence=IDA] [GO:0030054 "cell
junction" evidence=IDA] Pfam:PF00595 Pfam:PF00412
InterPro:IPR001478 InterPro:IPR001781 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50106 SMART:SM00132 SMART:SM00228
GO:GO:0007275 GO:GO:0006898 GO:GO:0005737 GO:GO:0030154
GO:GO:0046872 GO:GO:0030036 GO:GO:0015629 GO:GO:0008270
GO:GO:0005925 Gene3D:2.10.110.10 GO:GO:0001725 GO:GO:0001726
GO:GO:0045669 SUPFAM:SSF50156 GO:GO:0001503
Pathway_Interaction_DB:ret_pathway eggNOG:NOG286537
HOVERGEN:HBG051478 CTD:9260 EMBL:L35240 EMBL:AF345904 EMBL:AF345905
EMBL:AF345906 EMBL:AF265209 EMBL:BC001093 EMBL:BC014521
EMBL:BC067806 EMBL:BC084575 IPI:IPI00023122 IPI:IPI00023560
IPI:IPI00030835 IPI:IPI00060308 IPI:IPI00478185 IPI:IPI00655883
PIR:A55050 RefSeq:NP_005442.2 RefSeq:NP_976227.1 RefSeq:NP_998801.1
UniGene:Hs.533040 PDB:2Q3G PDBsum:2Q3G ProteinModelPortal:Q9NR12
SMR:Q9NR12 IntAct:Q9NR12 MINT:MINT-94304 STRING:Q9NR12
PhosphoSite:Q9NR12 DMDM:74752914 PaxDb:Q9NR12 PRIDE:Q9NR12
DNASU:9260 Ensembl:ENST00000355572 Ensembl:ENST00000355841
Ensembl:ENST00000356618 Ensembl:ENST00000359895
Ensembl:ENST00000393551 Ensembl:ENST00000486828
Ensembl:ENST00000493815 GeneID:9260 KEGG:hsa:9260 UCSC:uc003mha.1
UCSC:uc003mhb.1 UCSC:uc003mhf.3 UCSC:uc003mhg.1
GeneCards:GC05M176912 HGNC:HGNC:22958 HPA:HPA018794 MIM:605903
neXtProt:NX_Q9NR12 PharmGKB:PA128394546 InParanoid:Q9NR12
OMA:ATPTPMQ PhylomeDB:Q9NR12 ChiTaRS:PDLIM7
EvolutionaryTrace:Q9NR12 GenomeRNAi:9260 NextBio:34707
ArrayExpress:Q9NR12 Bgee:Q9NR12 CleanEx:HS_PDLIM7
Genevestigator:Q9NR12 GermOnline:ENSG00000196923 Uniprot:Q9NR12
Length = 457
Score = 137 (53.3 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 26/76 (34%), Positives = 38/76 (50%)
Query: 73 NCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQL 132
N ++ +G YC+RDY ++FGTKC C+ D + A +H CF C +C L
Sbjct: 376 NRAFYMEEGVPYCERDYEKMFGTKCHGCDFKIDAGDRFLEALGFSWHDTCFVCAICQINL 435
Query: 133 VPGDEFALREDGLFCK 148
G F ++D CK
Sbjct: 436 -EGKTFYSKKDRPLCK 450
Score = 127 (49.8 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 33/120 (27%), Positives = 50/120 (41%)
Query: 35 CAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFG 94
C +CH+ + V G Y ++V S+ + L+E F G +C Y +
Sbjct: 282 CHQCHKVIRGRY--LVALGHAYHPEEFVCSQCGKVLEEG-GFFEEKGAIFCPPCYDVRYA 338
Query: 95 TKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
C KC E +M A +HV CF C C K + F + E +C+ D+E M
Sbjct: 339 PSCAKCKKKITGE--IMHALKMTWHVHCFTCAAC-KTPIRNRAFYMEEGVPYCERDYEKM 395
Score = 48 (22.0 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 15/56 (26%), Positives = 24/56 (42%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+C C I +Y+ VA +H C++C + L+E F G +C Y
Sbjct: 281 VCHQCHKVIRGRYL--VALGHAYHPEEFVCSQCGKVLEEG-GFFEEKGAIFCPPCY 333
>UNIPROTKB|E2RBA8 [details] [associations]
symbol:PDLIM5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030018 "Z disc" evidence=IEA] [GO:0015629
"actin cytoskeleton" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] Pfam:PF00595 Pfam:PF00412 InterPro:IPR001478
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50106
SMART:SM00132 SMART:SM00228 GO:GO:0030018 GO:GO:0046872
GO:GO:0015629 GO:GO:0008270 Gene3D:2.10.110.10 SUPFAM:SSF50156
GeneTree:ENSGT00700000104411 CTD:10611 OMA:SGLHANA
EMBL:AAEX03016770 RefSeq:XP_861734.2 ProteinModelPortal:E2RBA8
Ensembl:ENSCAFT00000016017 GeneID:478482 KEGG:cfa:478482
NextBio:20853815 Uniprot:E2RBA8
Length = 596
Score = 133 (51.9 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 26/71 (36%), Positives = 35/71 (49%)
Query: 78 VRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDE 137
+ DG+ YC+ DY LFGT C C + D + A +H CF C VC + L G
Sbjct: 519 LEDGEPYCETDYYALFGTICHGCEFPIEAGDMFLEALGYTWHDTCFVCSVCCESL-EGQT 577
Query: 138 FALREDGLFCK 148
F ++D CK
Sbjct: 578 FFSKKDKPLCK 588
Score = 127 (49.8 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 35/119 (29%), Positives = 55/119 (46%)
Query: 35 CAECHQFLDENCTCFVRDGKTYCKRDYVSSE-KNQFLDENCTCFVRD-GKTYCKRDYVRL 92
CA C+Q + V GK++ ++ S KN FV + G YC+ Y +
Sbjct: 420 CAHCNQVI--RGPFLVALGKSWHPEEFNCSHCKNTMAYIG---FVEEKGALYCELCYEKF 474
Query: 93 FGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDH 151
F +C +C E V+ A + +HV CF CV CGK + + F L + +C+ D+
Sbjct: 475 FAPECGRCQRKILGE--VINALKQTWHVSCFVCVACGKP-IRNNVFHLEDGEPYCETDY 530
Score = 55 (24.4 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 16/61 (26%), Positives = 24/61 (39%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRD-GKTYCKRD 60
+R +C C I ++ VA WH C+ C + FV + G YC+
Sbjct: 415 KRTPMCAHCNQVIRGPFL--VALGKSWHPEEFNCSHCKNTMAY--IGFVEEKGALYCELC 470
Query: 61 Y 61
Y
Sbjct: 471 Y 471
>UNIPROTKB|F1NTC8 [details] [associations]
symbol:PDLIM5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00595 Pfam:PF00412 InterPro:IPR001478 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50106 SMART:SM00132
SMART:SM00228 GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10
SUPFAM:SSF50156 GeneTree:ENSGT00700000104411 EMBL:AADN02009351
EMBL:AADN02009352 IPI:IPI00577840 Ensembl:ENSGALT00000037662
ArrayExpress:F1NTC8 Uniprot:F1NTC8
Length = 595
Score = 132 (51.5 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 26/71 (36%), Positives = 33/71 (46%)
Query: 78 VRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDE 137
+ DG YC+ DY LFGT C C + D + A +H CF C VC L G
Sbjct: 518 LEDGDPYCETDYYALFGTMCHGCEFPIEAGDRFLEALGHTWHDTCFVCSVCNDSL-EGQT 576
Query: 138 FALREDGLFCK 148
F ++D CK
Sbjct: 577 FFSKKDKPLCK 587
Score = 114 (45.2 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 31/118 (26%), Positives = 53/118 (44%)
Query: 35 CAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRD-GKTYCKRDYVRLF 93
CA+C+Q + V GK++ ++ + + FV + G YC+ Y + F
Sbjct: 419 CAQCNQVI--RGPFLVALGKSWHPEEFNCAHCKTSMAY--IGFVEEKGALYCEVCYEKFF 474
Query: 94 GTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDH 151
+C KC E V+ A + +HV CF CV C + + F L + +C+ D+
Sbjct: 475 APECSKCQRKILGE--VINALKQTWHVSCFVCVACHNP-IRNNVFHLEDGDPYCETDY 529
Score = 56 (24.8 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 17/61 (27%), Positives = 24/61 (39%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRD-GKTYCKRD 60
+R +C C I ++ VA WH CA C + FV + G YC+
Sbjct: 414 KRTPMCAQCNQVIRGPFL--VALGKSWHPEEFNCAHCKTSMAY--IGFVEEKGALYCEVC 469
Query: 61 Y 61
Y
Sbjct: 470 Y 470
>UNIPROTKB|F1NIJ0 [details] [associations]
symbol:PDLIM5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0015629 "actin cytoskeleton" evidence=IEA] [GO:0030018 "Z disc"
evidence=IEA] Pfam:PF00595 Pfam:PF00412 InterPro:IPR001478
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50106
SMART:SM00132 SMART:SM00228 GO:GO:0030018 GO:GO:0046872
GO:GO:0015629 GO:GO:0008270 Gene3D:2.10.110.10 SUPFAM:SSF50156
GeneTree:ENSGT00700000104411 OMA:SGLHANA EMBL:AADN02009351
EMBL:AADN02009352 IPI:IPI00822233 Ensembl:ENSGALT00000019937
ArrayExpress:F1NIJ0 Uniprot:F1NIJ0
Length = 597
Score = 132 (51.5 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 26/71 (36%), Positives = 33/71 (46%)
Query: 78 VRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDE 137
+ DG YC+ DY LFGT C C + D + A +H CF C VC L G
Sbjct: 520 LEDGDPYCETDYYALFGTMCHGCEFPIEAGDRFLEALGHTWHDTCFVCSVCNDSL-EGQT 578
Query: 138 FALREDGLFCK 148
F ++D CK
Sbjct: 579 FFSKKDKPLCK 589
Score = 114 (45.2 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 31/118 (26%), Positives = 53/118 (44%)
Query: 35 CAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRD-GKTYCKRDYVRLF 93
CA+C+Q + V GK++ ++ + + FV + G YC+ Y + F
Sbjct: 421 CAQCNQVI--RGPFLVALGKSWHPEEFNCAHCKTSMAY--IGFVEEKGALYCEVCYEKFF 476
Query: 94 GTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDH 151
+C KC E V+ A + +HV CF CV C + + F L + +C+ D+
Sbjct: 477 APECSKCQRKILGE--VINALKQTWHVSCFVCVACHNP-IRNNVFHLEDGDPYCETDY 531
Score = 56 (24.8 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 17/61 (27%), Positives = 24/61 (39%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRD-GKTYCKRD 60
+R +C C I ++ VA WH CA C + FV + G YC+
Sbjct: 416 KRTPMCAQCNQVIRGPFL--VALGKSWHPEEFNCAHCKTSMAY--IGFVEEKGALYCEVC 471
Query: 61 Y 61
Y
Sbjct: 472 Y 472
>UNIPROTKB|Q3SX40 [details] [associations]
symbol:PDLIM7 "PDZ and LIM domain protein 7" species:9913
"Bos taurus" [GO:0005856 "cytoskeleton" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0030154 "cell differentiation"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0001503 "ossification" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] Pfam:PF00595 Pfam:PF00412
InterPro:IPR001478 InterPro:IPR001781 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50106 SMART:SM00132 SMART:SM00228
GO:GO:0007275 GO:GO:0005737 GO:GO:0030154 GO:GO:0005856
GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10 SUPFAM:SSF50156
GO:GO:0001503 eggNOG:NOG286537 HOGENOM:HOG000220936
HOVERGEN:HBG051478 GeneTree:ENSGT00700000104411 EMBL:BT020909
EMBL:BC104521 IPI:IPI00685721 IPI:IPI00698626 RefSeq:NP_001017947.1
RefSeq:NP_001106722.1 UniGene:Bt.9949 ProteinModelPortal:Q3SX40
SMR:Q3SX40 STRING:Q3SX40 PRIDE:Q3SX40 Ensembl:ENSBTAT00000009661
Ensembl:ENSBTAT00000009662 GeneID:533851 KEGG:bta:533851 CTD:9260
NextBio:20876171 ArrayExpress:Q3SX40 Uniprot:Q3SX40
Length = 424
Score = 135 (52.6 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 34/120 (28%), Positives = 51/120 (42%)
Query: 35 CAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFG 94
C +CH+ + V G+ Y ++V S+ + L+E F G +C Y +
Sbjct: 249 CHQCHKVIRGRY--LVALGRAYHPEEFVCSQCGKVLEEG-GFFEEKGAIFCPPCYDVRYA 305
Query: 95 TKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
C KC E VM A +HV CF C C K + F + E +C+ D+E M
Sbjct: 306 PSCAKCKKKITGE--VMHALKTTWHVHCFTCAAC-KAPIRNRAFYMEEGAPYCEPDYEKM 362
Score = 131 (51.2 bits), Expect = 6.9e-11, Sum P(2) = 6.9e-11
Identities = 25/76 (32%), Positives = 37/76 (48%)
Query: 73 NCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQL 132
N ++ +G YC+ DY ++FGTKC C+ D + A +H CF C +C L
Sbjct: 343 NRAFYMEEGAPYCEPDYEKMFGTKCRGCDFKIDAGDRFLEALGFSWHDTCFVCAICQINL 402
Query: 133 VPGDEFALREDGLFCK 148
G F ++D CK
Sbjct: 403 -EGKTFYSKKDKPLCK 417
Score = 49 (22.3 bits), Expect = 6.9e-11, Sum P(2) = 6.9e-11
Identities = 15/56 (26%), Positives = 24/56 (42%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+C C I +Y+ VA +H C++C + L+E F G +C Y
Sbjct: 248 VCHQCHKVIRGRYL--VALGRAYHPEEFVCSQCGKVLEEG-GFFEEKGAIFCPPCY 300
>UNIPROTKB|E9PBF5 [details] [associations]
symbol:PDLIM5 "PDZ and LIM domain protein 5" species:9606
"Homo sapiens" [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00595 Pfam:PF00412 InterPro:IPR001478 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50106 SMART:SM00132
SMART:SM00228 GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10
SUPFAM:SSF50156 EMBL:AC093778 EMBL:AC108067 EMBL:AC109925
HGNC:HGNC:17468 ChiTaRS:PDLIM5 IPI:IPI00966347
ProteinModelPortal:E9PBF5 SMR:E9PBF5 Ensembl:ENST00000503974
UCSC:uc011cdx.1 ArrayExpress:E9PBF5 Bgee:E9PBF5 Uniprot:E9PBF5
Length = 483
Score = 124 (48.7 bits), Expect = 6.9e-11, Sum P(2) = 6.9e-11
Identities = 24/66 (36%), Positives = 33/66 (50%)
Query: 78 VRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDE 137
+ DG+ YC+ DY LFGT C C + D + A +H CF C VC + L G
Sbjct: 416 LEDGEPYCETDYYALFGTICHGCEFPIEAGDMFLEALGYTWHDTCFVCSVCCESL-EGQT 474
Query: 138 FALRED 143
F ++D
Sbjct: 475 FFSKKD 480
Score = 123 (48.4 bits), Expect = 6.5e-07, P = 6.5e-07
Identities = 34/119 (28%), Positives = 55/119 (46%)
Query: 35 CAECHQFLDENCTCFVRDGKTYCKRDYVSSE-KNQFLDENCTCFVRD-GKTYCKRDYVRL 92
CA C+Q + V GK++ ++ + KN FV + G YC+ Y +
Sbjct: 317 CAHCNQVI--RGPFLVALGKSWHPEEFNCAHCKNTMAYIG---FVEEKGALYCELCYEKF 371
Query: 93 FGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDH 151
F +C +C E V+ A + +HV CF CV CGK + + F L + +C+ D+
Sbjct: 372 FAPECGRCQRKILGE--VISALKQTWHVSCFVCVACGKP-IRNNVFHLEDGEPYCETDY 427
Score = 58 (25.5 bits), Expect = 6.9e-11, Sum P(2) = 6.9e-11
Identities = 17/61 (27%), Positives = 24/61 (39%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRD-GKTYCKRD 60
+R +C C I ++ VA WH CA C + FV + G YC+
Sbjct: 312 KRTPMCAHCNQVIRGPFL--VALGKSWHPEEFNCAHCKNTMAY--IGFVEEKGALYCELC 367
Query: 61 Y 61
Y
Sbjct: 368 Y 368
>UNIPROTKB|H9L043 [details] [associations]
symbol:H9L043 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 EMBL:AADN02053375
Ensembl:ENSGALT00000021923 OMA:CECERRL Uniprot:H9L043
Length = 280
Score = 154 (59.3 bits), Expect = 7.5e-11, P = 7.5e-11
Identities = 27/62 (43%), Positives = 35/62 (56%)
Query: 91 RLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDD 150
RLF TKC C + +MR +YHV CF C C ++L GDEF L+E L C+ D
Sbjct: 1 RLFQTKCSSCLKAIAPSELIMRVLENVYHVHCFYCCECERRLQRGDEFVLKEGQLLCRSD 60
Query: 151 HE 152
+E
Sbjct: 61 YE 62
>UNIPROTKB|A1L5A7 [details] [associations]
symbol:PDLIM7 "PDZ and LIM domain protein 7" species:9913
"Bos taurus" [GO:0030036 "actin cytoskeleton organization"
evidence=IEA] [GO:0005925 "focal adhesion" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0001726 "ruffle"
evidence=IEA] [GO:0001725 "stress fiber" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] Pfam:PF00595 Pfam:PF00412
InterPro:IPR001478 InterPro:IPR001781 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50106 SMART:SM00132 SMART:SM00228
GO:GO:0005737 GO:GO:0046872 GO:GO:0030036 GO:GO:0008270
GO:GO:0005925 Gene3D:2.10.110.10 GO:GO:0001725 GO:GO:0001726
SUPFAM:SSF50156 HOGENOM:HOG000220936 HOVERGEN:HBG051478
GeneTree:ENSGT00700000104411 UniGene:Bt.9949 OMA:ATPTPMQ
OrthoDB:EOG4XSKPZ EMBL:DAAA02020055 EMBL:BT029894 IPI:IPI00829551
SMR:A1L5A7 STRING:A1L5A7 Ensembl:ENSBTAT00000024902
InParanoid:A1L5A7 Uniprot:A1L5A7
Length = 458
Score = 135 (52.6 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 34/120 (28%), Positives = 51/120 (42%)
Query: 35 CAECHQFLDENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFG 94
C +CH+ + V G+ Y ++V S+ + L+E F G +C Y +
Sbjct: 283 CHQCHKVIRGRY--LVALGRAYHPEEFVCSQCGKVLEEG-GFFEEKGAIFCPPCYDVRYA 339
Query: 95 TKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
C KC E VM A +HV CF C C K + F + E +C+ D+E M
Sbjct: 340 PSCAKCKKKITGE--VMHALKTTWHVHCFTCAAC-KAPIRNRAFYMEEGAPYCEPDYEKM 396
Score = 131 (51.2 bits), Expect = 8.9e-11, Sum P(2) = 8.9e-11
Identities = 25/76 (32%), Positives = 37/76 (48%)
Query: 73 NCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQL 132
N ++ +G YC+ DY ++FGTKC C+ D + A +H CF C +C L
Sbjct: 377 NRAFYMEEGAPYCEPDYEKMFGTKCRGCDFKIDAGDRFLEALGFSWHDTCFVCAICQINL 436
Query: 133 VPGDEFALREDGLFCK 148
G F ++D CK
Sbjct: 437 -EGKTFYSKKDKPLCK 451
Score = 49 (22.3 bits), Expect = 8.9e-11, Sum P(2) = 8.9e-11
Identities = 15/56 (26%), Positives = 24/56 (42%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+C C I +Y+ VA +H C++C + L+E F G +C Y
Sbjct: 282 VCHQCHKVIRGRYL--VALGRAYHPEEFVCSQCGKVLEEG-GFFEEKGAIFCPPCY 334
>UNIPROTKB|E1BS96 [details] [associations]
symbol:E1BS96 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0007010 "cytoskeleton organization"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003779 "actin binding" evidence=IEA] [GO:0007411 "axon
guidance" evidence=IEA] [GO:0015629 "actin cytoskeleton"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 InterPro:IPR003128 Pfam:PF02209 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS51089 SMART:SM00132 SMART:SM00153
GO:GO:0007010 GO:GO:0046872 GO:GO:0015629 GO:GO:0008270
GO:GO:0045944 Gene3D:1.10.950.10 Gene3D:2.10.110.10 SUPFAM:SSF47050
GeneTree:ENSGT00700000104021 OMA:HHPSEKP EMBL:AADN02030925
EMBL:AADN02030926 EMBL:AADN02030927 EMBL:AADN02030928
EMBL:AADN02030929 EMBL:AADN02030930 EMBL:AADN02030931
EMBL:AADN02030932 IPI:IPI00582348 Ensembl:ENSGALT00000014731
Uniprot:E1BS96
Length = 712
Score = 138 (53.6 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 26/72 (36%), Positives = 36/72 (50%)
Query: 77 FVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGD 136
F+++G+ C DY R++GT+C C F E V+ A K YH CF C VC + PGD
Sbjct: 72 FIKNGEYLCTLDYQRMYGTRCNGCG-EFV-EGEVVTALGKTYHPNCFACTVCKRPFPPGD 129
Query: 137 EFALREDGLFCK 148
C+
Sbjct: 130 RVTFNGRDCLCQ 141
Score = 127 (49.8 bits), Expect = 9.7e-11, Sum P(2) = 9.7e-11
Identities = 28/81 (34%), Positives = 41/81 (50%)
Query: 79 RDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEF 138
+DG YC++DY LFG KCE C+ + V+ A +K YH C C C + G+E
Sbjct: 201 KDGAPYCEKDYQVLFGVKCEACHQFITGK--VLEAGDKHYHPSCARCSRCNQMFTEGEEM 258
Query: 139 ALREDGLF---CKDDHEGMDK 156
L+ ++ CK + DK
Sbjct: 259 YLQGSTVWHPDCKQSTKTEDK 279
Score = 119 (46.9 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 33/119 (27%), Positives = 51/119 (42%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S C GCG I + L +A D +WH C +C C + L +DG YC++DY
Sbjct: 158 SNCAGCGRDIKNGQAL-LALDKQWHLGCFKCKACGKVLTGEYIS--KDGAPYCEKDYQVL 214
Query: 65 EKNQFLDENCTCFVRDGKTYCKRD-YVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQC 122
+ E C F+ GK D + +C +CN F + + + ++H C
Sbjct: 215 FGVKC--EACHQFIT-GKVLEAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDC 270
Score = 58 (25.5 bits), Expect = 9.7e-11, Sum P(2) = 9.7e-11
Identities = 16/55 (29%), Positives = 24/55 (43%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
C CG + +LRV +H C C C L + F+++G+ C DY
Sbjct: 33 CHKCGEPCKGE-VLRVQ-SRHFHIKCFTCKVCGCDLAQG-GFFIKNGEYLCTLDY 84
>UNIPROTKB|Q5T6N2 [details] [associations]
symbol:ABLIM1 "Actin-binding LIM protein 1" species:9606
"Homo sapiens" [GO:0003779 "actin binding" evidence=IEA]
[GO:0007010 "cytoskeleton organization" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001781
InterPro:IPR003128 Pfam:PF02209 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS51089 SMART:SM00132 SMART:SM00153 GO:GO:0007010
GO:GO:0046872 GO:GO:0008270 EMBL:AL133384 EMBL:AL354873
EMBL:AL590109 UniGene:Hs.438236 UniGene:Hs.538331 HGNC:HGNC:78
HOVERGEN:HBG031499 ChiTaRS:ABLIM1 Gene3D:1.10.950.10
Gene3D:2.10.110.10 SUPFAM:SSF47050 HOGENOM:HOG000285997
IPI:IPI00455786 SMR:Q5T6N2 Ensembl:ENST00000369256 Uniprot:Q5T6N2
Length = 702
Score = 137 (53.3 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 25/72 (34%), Positives = 36/72 (50%)
Query: 77 FVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGD 136
F+++G+ C DY R++GT+C C F E V+ A K YH CF C +C + PGD
Sbjct: 62 FIKNGEYLCTLDYQRMYGTRCHGCG-EFV-EGEVVTALGKTYHPNCFACTICKRPFPPGD 119
Query: 137 EFALREDGLFCK 148
C+
Sbjct: 120 RVTFNGRDCLCQ 131
Score = 124 (48.7 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 27/81 (33%), Positives = 41/81 (50%)
Query: 79 RDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEF 138
+DG YC++DY LFG KCE C+ + V+ A +K YH C C C + G+E
Sbjct: 191 KDGAPYCEKDYQGLFGVKCEACHQFITGK--VLEAGDKHYHPSCARCSRCNQMFTEGEEM 248
Query: 139 ALREDGLF---CKDDHEGMDK 156
L+ ++ CK + +K
Sbjct: 249 YLQGSTVWHPDCKQSTKTEEK 269
Score = 122 (48.0 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 33/119 (27%), Positives = 51/119 (42%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S C GCG I + L +A D +WH C +C C + L +DG YC++DY
Sbjct: 148 SNCAGCGRDIKNGQAL-LALDKQWHLGCFKCKSCGKVLTGEYIS--KDGAPYCEKDYQGL 204
Query: 65 EKNQFLDENCTCFVRDGKTYCKRD-YVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQC 122
+ E C F+ GK D + +C +CN F + + + ++H C
Sbjct: 205 FGVKC--EACHQFIT-GKVLEAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDC 260
Score = 116 (45.9 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 33/130 (25%), Positives = 58/130 (44%)
Query: 34 RCAECHQFLDENCTCFVRDGKTY---------CKRDYVSSEKNQFLDENCTCFVRDGKTY 84
RC C +F++ + GKTY CKR + ++ F +C C + +
Sbjct: 81 RCHGCGEFVEGEVVTAL--GKTYHPNCFACTICKRPFPPGDRVTFNGRDCLCQLC-AQPM 137
Query: 85 CKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDG 144
F + C C + K ++ A +K +H+ CF C CGK L G E+ ++
Sbjct: 138 SSSPKETTFSSNCAGCGRDIKNGQALL-ALDKQWHLGCFKCKSCGKVLT-G-EYISKDGA 194
Query: 145 LFCKDDHEGM 154
+C+ D++G+
Sbjct: 195 PYCEKDYQGL 204
Score = 58 (25.5 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 16/55 (29%), Positives = 24/55 (43%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
C CG + +LRV +H C C C L + F+++G+ C DY
Sbjct: 23 CHKCGEPCKGE-VLRVQTK-HFHIKCFTCKVCGCDLAQG-GFFIKNGEYLCTLDY 74
>UNIPROTKB|F1LWK7 [details] [associations]
symbol:F1LWK7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003779 "actin binding" evidence=IEA]
[GO:0007010 "cytoskeleton organization" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001781
InterPro:IPR003128 Pfam:PF02209 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS51089 SMART:SM00132 SMART:SM00153 GO:GO:0007010
GO:GO:0046872 GO:GO:0008270 Gene3D:1.10.950.10 Gene3D:2.10.110.10
SUPFAM:SSF47050 GeneTree:ENSGT00700000104021 IPI:IPI00388829
PRIDE:F1LWK7 Ensembl:ENSRNOT00000018693 ArrayExpress:F1LWK7
Uniprot:F1LWK7
Length = 655
Score = 135 (52.6 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 25/72 (34%), Positives = 35/72 (48%)
Query: 77 FVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGD 136
F+++G C DY R++GT+C C F E V+ A K YH CF C +C + PGD
Sbjct: 61 FIKNGDYLCTLDYQRMYGTRCHGCG-EFV-EGEVVTALGKTYHPNCFACTICKRPFPPGD 118
Query: 137 EFALREDGLFCK 148
C+
Sbjct: 119 RVTFNGRDCLCQ 130
Score = 125 (49.1 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 27/81 (33%), Positives = 41/81 (50%)
Query: 79 RDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEF 138
+DG YC++DY LFG KCE C+ + V+ A +K YH C C C + G+E
Sbjct: 190 KDGSPYCEKDYQGLFGVKCEACHQFITGK--VLEAGDKHYHPSCARCSRCNQMFTEGEEM 247
Query: 139 ALREDGLF---CKDDHEGMDK 156
L+ ++ CK + +K
Sbjct: 248 YLQGSTVWHPDCKQSTKTEEK 268
Score = 123 (48.4 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 33/119 (27%), Positives = 51/119 (42%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S C GCG I + L +A D +WH C +C C + L +DG YC++DY
Sbjct: 147 SNCAGCGRDIKNGQAL-LALDKQWHLGCFKCKSCGKVLTGEYIS--KDGSPYCEKDYQGL 203
Query: 65 EKNQFLDENCTCFVRDGKTYCKRD-YVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQC 122
+ E C F+ GK D + +C +CN F + + + ++H C
Sbjct: 204 FGVKC--EACHQFIT-GKVLEAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDC 259
Score = 108 (43.1 bits), Expect = 0.00069, P = 0.00069
Identities = 32/130 (24%), Positives = 57/130 (43%)
Query: 34 RCAECHQFLDENCTCFVRDGKTY---------CKRDYVSSEKNQFLDENCTCFVRDGKTY 84
RC C +F++ + GKTY CKR + ++ F +C C + +
Sbjct: 80 RCHGCGEFVEGEVVTAL--GKTYHPNCFACTICKRPFPPGDRVTFNGRDCLCQLC-AQPM 136
Query: 85 CKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDG 144
+ C C + K ++ A +K +H+ CF C CGK L G E+ ++
Sbjct: 137 SSSPKEATCSSNCAGCGRDIKNGQALL-ALDKQWHLGCFKCKSCGKVLT-G-EYISKDGS 193
Query: 145 LFCKDDHEGM 154
+C+ D++G+
Sbjct: 194 PYCEKDYQGL 203
Score = 56 (24.8 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 16/55 (29%), Positives = 23/55 (41%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
C CG + +LRV +H C C C L + F+++G C DY
Sbjct: 22 CHKCGEPCKGE-VLRVQTK-HFHIKCFTCKVCGCDLAQG-GFFIKNGDYLCTLDY 73
>UNIPROTKB|F8W8M4 [details] [associations]
symbol:ABLIM1 "Actin-binding LIM protein 1" species:9606
"Homo sapiens" [GO:0003779 "actin binding" evidence=IEA]
[GO:0007010 "cytoskeleton organization" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001781
InterPro:IPR003128 Pfam:PF02209 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS51089 SMART:SM00132 SMART:SM00153 GO:GO:0007010
GO:GO:0046872 GO:GO:0008270 EMBL:AL133384 EMBL:AL354873
EMBL:AL590109 HGNC:HGNC:78 ChiTaRS:ABLIM1 Gene3D:1.10.950.10
Gene3D:2.10.110.10 SUPFAM:SSF47050 IPI:IPI00940368
ProteinModelPortal:F8W8M4 SMR:F8W8M4 PRIDE:F8W8M4
Ensembl:ENST00000533213 ArrayExpress:F8W8M4 Bgee:F8W8M4
Uniprot:F8W8M4
Length = 718
Score = 137 (53.3 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 25/72 (34%), Positives = 36/72 (50%)
Query: 77 FVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGD 136
F+++G+ C DY R++GT+C C F E V+ A K YH CF C +C + PGD
Sbjct: 78 FIKNGEYLCTLDYQRMYGTRCHGCG-EFV-EGEVVTALGKTYHPNCFACTICKRPFPPGD 135
Query: 137 EFALREDGLFCK 148
C+
Sbjct: 136 RVTFNGRDCLCQ 147
Score = 124 (48.7 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 27/81 (33%), Positives = 41/81 (50%)
Query: 79 RDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEF 138
+DG YC++DY LFG KCE C+ + V+ A +K YH C C C + G+E
Sbjct: 207 KDGAPYCEKDYQGLFGVKCEACHQFITGK--VLEAGDKHYHPSCARCSRCNQMFTEGEEM 264
Query: 139 ALREDGLF---CKDDHEGMDK 156
L+ ++ CK + +K
Sbjct: 265 YLQGSTVWHPDCKQSTKTEEK 285
Score = 122 (48.0 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 33/119 (27%), Positives = 51/119 (42%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S C GCG I + L +A D +WH C +C C + L +DG YC++DY
Sbjct: 164 SNCAGCGRDIKNGQAL-LALDKQWHLGCFKCKSCGKVLTGEYIS--KDGAPYCEKDYQGL 220
Query: 65 EKNQFLDENCTCFVRDGKTYCKRD-YVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQC 122
+ E C F+ GK D + +C +CN F + + + ++H C
Sbjct: 221 FGVKC--EACHQFIT-GKVLEAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDC 276
Score = 116 (45.9 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 33/130 (25%), Positives = 58/130 (44%)
Query: 34 RCAECHQFLDENCTCFVRDGKTY---------CKRDYVSSEKNQFLDENCTCFVRDGKTY 84
RC C +F++ + GKTY CKR + ++ F +C C + +
Sbjct: 97 RCHGCGEFVEGEVVTAL--GKTYHPNCFACTICKRPFPPGDRVTFNGRDCLCQLC-AQPM 153
Query: 85 CKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDG 144
F + C C + K ++ A +K +H+ CF C CGK L G E+ ++
Sbjct: 154 SSSPKETTFSSNCAGCGRDIKNGQALL-ALDKQWHLGCFKCKSCGKVLT-G-EYISKDGA 210
Query: 145 LFCKDDHEGM 154
+C+ D++G+
Sbjct: 211 PYCEKDYQGL 220
Score = 58 (25.5 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 16/55 (29%), Positives = 24/55 (43%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
C CG + +LRV +H C C C L + F+++G+ C DY
Sbjct: 39 CHKCGEPCKGE-VLRVQTK-HFHIKCFTCKVCGCDLAQG-GFFIKNGEYLCTLDY 90
>UNIPROTKB|J9P5B6 [details] [associations]
symbol:ABLIM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0007010 "cytoskeleton organization" evidence=IEA] [GO:0003779
"actin binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001781
InterPro:IPR003128 Pfam:PF02209 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS51089 SMART:SM00132 SMART:SM00153 GO:GO:0007010
GO:GO:0046872 GO:GO:0008270 Gene3D:1.10.950.10 Gene3D:2.10.110.10
SUPFAM:SSF47050 GeneTree:ENSGT00700000104021 EMBL:AAEX03015541
EMBL:AAEX03015542 Ensembl:ENSCAFT00000045219 Uniprot:J9P5B6
Length = 667
Score = 137 (53.3 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 25/72 (34%), Positives = 36/72 (50%)
Query: 77 FVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGD 136
F+++G+ C DY R++GT+C C F E V+ A K YH CF C +C + PGD
Sbjct: 62 FIKNGEYLCTLDYQRMYGTRCHGCG-EFV-EGEVVTALGKTYHPNCFACTICKRPFPPGD 119
Query: 137 EFALREDGLFCK 148
C+
Sbjct: 120 RVTFNGRDCLCQ 131
Score = 124 (48.7 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 27/81 (33%), Positives = 41/81 (50%)
Query: 79 RDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEF 138
+DG YC++DY LFG KCE C+ + V+ A +K YH C C C + G+E
Sbjct: 191 KDGAPYCEKDYQGLFGVKCEACHQFITGK--VLEAGDKHYHPSCARCSRCNQMFTEGEEM 248
Query: 139 ALREDGLF---CKDDHEGMDK 156
L+ ++ CK + +K
Sbjct: 249 YLQGSTVWHPDCKQSTKTEEK 269
Score = 118 (46.6 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 32/119 (26%), Positives = 51/119 (42%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S C GCG I + L +A + +WH C +C C + L +DG YC++DY
Sbjct: 148 SNCAGCGRDIKNGQAL-LALEKQWHLGCFKCKSCGKVLTGEYIS--KDGAPYCEKDYQGL 204
Query: 65 EKNQFLDENCTCFVRDGKTYCKRD-YVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQC 122
+ E C F+ GK D + +C +CN F + + + ++H C
Sbjct: 205 FGVKC--EACHQFIT-GKVLEAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDC 260
Score = 57 (25.1 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 16/55 (29%), Positives = 24/55 (43%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
C CG + +LRV +H C C C L + F+++G+ C DY
Sbjct: 23 CHKCGEPCKGE-VLRVQTR-HFHIKCFTCKVCGCDLAQG-GFFIKNGEYLCTLDY 74
>UNIPROTKB|F1LX72 [details] [associations]
symbol:F1LX72 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003779 "actin binding" evidence=IEA]
[GO:0007010 "cytoskeleton organization" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001781
InterPro:IPR003128 Pfam:PF02209 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS51089 SMART:SM00132 SMART:SM00153 GO:GO:0007010
GO:GO:0046872 GO:GO:0008270 Gene3D:1.10.950.10 Gene3D:2.10.110.10
SUPFAM:SSF47050 IPI:IPI00198339 PRIDE:F1LX72
Ensembl:ENSRNOT00000018611 ArrayExpress:F1LX72 Uniprot:F1LX72
Length = 701
Score = 135 (52.6 bits), Expect = 5.7e-08, P = 5.7e-08
Identities = 25/72 (34%), Positives = 35/72 (48%)
Query: 77 FVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGD 136
F+++G C DY R++GT+C C F E V+ A K YH CF C +C + PGD
Sbjct: 61 FIKNGDYLCTLDYQRMYGTRCHGCG-EFV-EGEVVTALGKTYHPNCFACTICKRPFPPGD 118
Query: 137 EFALREDGLFCK 148
C+
Sbjct: 119 RVTFNGRDCLCQ 130
Score = 125 (49.1 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 27/81 (33%), Positives = 41/81 (50%)
Query: 79 RDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEF 138
+DG YC++DY LFG KCE C+ + V+ A +K YH C C C + G+E
Sbjct: 190 KDGSPYCEKDYQGLFGVKCEACHQFITGK--VLEAGDKHYHPSCARCSRCNQMFTEGEEM 247
Query: 139 ALREDGLF---CKDDHEGMDK 156
L+ ++ CK + +K
Sbjct: 248 YLQGSTVWHPDCKQSTKTEEK 268
Score = 123 (48.4 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 33/119 (27%), Positives = 51/119 (42%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S C GCG I + L +A D +WH C +C C + L +DG YC++DY
Sbjct: 147 SNCAGCGRDIKNGQAL-LALDKQWHLGCFKCKSCGKVLTGEYIS--KDGSPYCEKDYQGL 203
Query: 65 EKNQFLDENCTCFVRDGKTYCKRD-YVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQC 122
+ E C F+ GK D + +C +CN F + + + ++H C
Sbjct: 204 FGVKC--EACHQFIT-GKVLEAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDC 259
Score = 108 (43.1 bits), Expect = 0.00075, P = 0.00075
Identities = 32/130 (24%), Positives = 57/130 (43%)
Query: 34 RCAECHQFLDENCTCFVRDGKTY---------CKRDYVSSEKNQFLDENCTCFVRDGKTY 84
RC C +F++ + GKTY CKR + ++ F +C C + +
Sbjct: 80 RCHGCGEFVEGEVVTAL--GKTYHPNCFACTICKRPFPPGDRVTFNGRDCLCQLC-AQPM 136
Query: 85 CKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDG 144
+ C C + K ++ A +K +H+ CF C CGK L G E+ ++
Sbjct: 137 SSSPKEATCSSNCAGCGRDIKNGQALL-ALDKQWHLGCFKCKSCGKVLT-G-EYISKDGS 193
Query: 145 LFCKDDHEGM 154
+C+ D++G+
Sbjct: 194 PYCEKDYQGL 203
Score = 56 (24.8 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 16/55 (29%), Positives = 23/55 (41%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
C CG + +LRV +H C C C L + F+++G C DY
Sbjct: 22 CHKCGEPCKGE-VLRVQTK-HFHIKCFTCKVCGCDLAQG-GFFIKNGDYLCTLDY 73
>UNIPROTKB|O14639 [details] [associations]
symbol:ABLIM1 "Actin-binding LIM protein 1" species:9606
"Homo sapiens" [GO:0007010 "cytoskeleton organization"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003779 "actin binding" evidence=IEA] [GO:0015629 "actin
cytoskeleton" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0009887 "organ
morphogenesis" evidence=TAS] [GO:0007601 "visual perception"
evidence=TAS] [GO:0007411 "axon guidance" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] Pfam:PF00412 InterPro:IPR001781
InterPro:IPR003128 Pfam:PF02209 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS51089 SMART:SM00132 SMART:SM00153 GO:GO:0005737
Reactome:REACT_111045 GO:GO:0007411 GO:GO:0003779 GO:GO:0007010
GO:GO:0046872 GO:GO:0015629 GO:GO:0007601 GO:GO:0008270
GO:GO:0045944 EMBL:AF005654 EMBL:D31883 EMBL:AK098277 EMBL:CR749819
EMBL:AL133384 EMBL:AL354873 EMBL:AL590109 EMBL:BC002448
IPI:IPI00329495 IPI:IPI00456617 IPI:IPI00551038 IPI:IPI00744789
IPI:IPI00883638 RefSeq:NP_001003407.1 RefSeq:NP_001003408.1
RefSeq:NP_002304.3 RefSeq:NP_006711.3 UniGene:Hs.438236
UniGene:Hs.538331 ProteinModelPortal:O14639 SMR:O14639
IntAct:O14639 MINT:MINT-1447354 STRING:O14639 PhosphoSite:O14639
PaxDb:O14639 PRIDE:O14639 Ensembl:ENST00000336585
Ensembl:ENST00000369252 Ensembl:ENST00000369257
Ensembl:ENST00000392952 GeneID:3983 KEGG:hsa:3983 UCSC:uc021pyu.1
UCSC:uc021pyw.1 UCSC:uc021pyz.1 UCSC:uc021pzc.1 CTD:3983
GeneCards:GC10M116190 HGNC:HGNC:78 HPA:HPA038951 HPA:HPA038952
MIM:602330 neXtProt:NX_O14639 PharmGKB:PA35023 eggNOG:NOG302299
HOVERGEN:HBG031499 KO:K07520 OrthoDB:EOG44TP7D ChiTaRS:ABLIM1
GenomeRNAi:3983 NextBio:15616 ArrayExpress:O14639 Bgee:O14639
CleanEx:HS_ABLIM1 Genevestigator:O14639 GermOnline:ENSG00000099204
GO:GO:0009887 Gene3D:1.10.950.10 Gene3D:2.10.110.10 SUPFAM:SSF47050
Uniprot:O14639
Length = 778
Score = 137 (53.3 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 25/72 (34%), Positives = 36/72 (50%)
Query: 77 FVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGD 136
F+++G+ C DY R++GT+C C F E V+ A K YH CF C +C + PGD
Sbjct: 138 FIKNGEYLCTLDYQRMYGTRCHGCG-EFV-EGEVVTALGKTYHPNCFACTICKRPFPPGD 195
Query: 137 EFALREDGLFCK 148
C+
Sbjct: 196 RVTFNGRDCLCQ 207
Score = 124 (48.7 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 27/81 (33%), Positives = 41/81 (50%)
Query: 79 RDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEF 138
+DG YC++DY LFG KCE C+ + V+ A +K YH C C C + G+E
Sbjct: 267 KDGAPYCEKDYQGLFGVKCEACHQFITGK--VLEAGDKHYHPSCARCSRCNQMFTEGEEM 324
Query: 139 ALREDGLF---CKDDHEGMDK 156
L+ ++ CK + +K
Sbjct: 325 YLQGSTVWHPDCKQSTKTEEK 345
Score = 122 (48.0 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 33/119 (27%), Positives = 51/119 (42%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S C GCG I + L +A D +WH C +C C + L +DG YC++DY
Sbjct: 224 SNCAGCGRDIKNGQAL-LALDKQWHLGCFKCKSCGKVLTGEYIS--KDGAPYCEKDYQGL 280
Query: 65 EKNQFLDENCTCFVRDGKTYCKRD-YVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQC 122
+ E C F+ GK D + +C +CN F + + + ++H C
Sbjct: 281 FGVKC--EACHQFIT-GKVLEAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDC 336
Score = 116 (45.9 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 33/130 (25%), Positives = 58/130 (44%)
Query: 34 RCAECHQFLDENCTCFVRDGKTY---------CKRDYVSSEKNQFLDENCTCFVRDGKTY 84
RC C +F++ + GKTY CKR + ++ F +C C + +
Sbjct: 157 RCHGCGEFVEGEVVTAL--GKTYHPNCFACTICKRPFPPGDRVTFNGRDCLCQLC-AQPM 213
Query: 85 CKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDG 144
F + C C + K ++ A +K +H+ CF C CGK L G E+ ++
Sbjct: 214 SSSPKETTFSSNCAGCGRDIKNGQALL-ALDKQWHLGCFKCKSCGKVLT-G-EYISKDGA 270
Query: 145 LFCKDDHEGM 154
+C+ D++G+
Sbjct: 271 PYCEKDYQGL 280
Score = 58 (25.5 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 16/55 (29%), Positives = 24/55 (43%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
C CG + +LRV +H C C C L + F+++G+ C DY
Sbjct: 99 CHKCGEPCKGE-VLRVQTK-HFHIKCFTCKVCGCDLAQG-GFFIKNGEYLCTLDY 150
>UNIPROTKB|F1S7Y2 [details] [associations]
symbol:ABLIM2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IEA] [GO:0030016 "myofibril"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0007010 "cytoskeleton organization"
evidence=IEA] [GO:0003779 "actin binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001781 InterPro:IPR003128 Pfam:PF02209
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS51089 SMART:SM00132
SMART:SM00153 GO:GO:0005634 GO:GO:0007010 GO:GO:0046872
GO:GO:0008270 GO:GO:0045944 Gene3D:1.10.950.10 Gene3D:2.10.110.10
SUPFAM:SSF47050 GeneTree:ENSGT00700000104021 GO:GO:0045111
GO:GO:0030016 OMA:FRHHYIP EMBL:FP003588 Ensembl:ENSSSCT00000009541
Uniprot:F1S7Y2
Length = 689
Score = 144 (55.7 bits), Expect = 6.0e-09, P = 6.0e-09
Identities = 28/72 (38%), Positives = 36/72 (50%)
Query: 77 FVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGD 136
FVR G+ C +DY RL+GT+C C+ + E V+ A K YH CF C VC PGD
Sbjct: 89 FVRQGEYICTQDYQRLYGTRCFSCDQFIEGE--VVSALGKTYHPDCFVCAVCRSPFPPGD 146
Query: 137 EFALREDGLFCK 148
C+
Sbjct: 147 RVTFNGKECMCQ 158
Score = 117 (46.2 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 27/87 (31%), Positives = 38/87 (43%)
Query: 73 NCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQL 132
N +DG YC+ DY FG +C+ C V+ A K YH C CV CG+
Sbjct: 214 NAEYISKDGLPYCEADYHAKFGIRCDGCEKYITGH--VLEAGEKHYHPLCALCVRCGRMF 271
Query: 133 VPGDEFALREDGLF---CKDDHEGMDK 156
G+E L+ ++ C+ DK
Sbjct: 272 SEGEEMYLQGSSIWHPACRQAARTEDK 298
Score = 116 (45.9 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 30/116 (25%), Positives = 46/116 (39%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCG +I + L VA D WH C +C C + L N +DG YC+ DY + K
Sbjct: 179 CGGCGAEIKNGQSL-VALDKHWHLGCFKCKTCGKQL--NAEYISKDGLPYCEADYHA--K 233
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQC 122
+ C ++ + C +C F + + + I+H C
Sbjct: 234 FGIRCDGCEKYITGHVLEAGEKHYHPLCALCVRCGRMFSEGEEMYLQGSSIWHPAC 289
Score = 77 (32.2 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 21/56 (37%), Positives = 26/56 (46%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
LC CGG + +LRV +H C C C L E FVR G+ C +DY
Sbjct: 49 LCNTCGGVCRGE-VLRVQSKY-FHIQCFVCKACGCDLAEG-GFFVRQGEYICTQDY 101
Score = 36 (17.7 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAEC 38
C C I + + + +H C CA C
Sbjct: 109 CFSCDQFIEGEVVSALGKT--YHPDCFVCAVC 138
>UNIPROTKB|F1MI97 [details] [associations]
symbol:F1MI97 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0015629 "actin
cytoskeleton" evidence=IEA] [GO:0007411 "axon guidance"
evidence=IEA] [GO:0003779 "actin binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0007010 "cytoskeleton
organization" evidence=IEA] Pfam:PF00412 InterPro:IPR001781
InterPro:IPR003128 Pfam:PF02209 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS51089 SMART:SM00132 SMART:SM00153 GO:GO:0007411
GO:GO:0007010 GO:GO:0046872 GO:GO:0015629 GO:GO:0008270
GO:GO:0045944 Gene3D:1.10.950.10 Gene3D:2.10.110.10 SUPFAM:SSF47050
GeneTree:ENSGT00700000104021 OMA:HHPSEKP EMBL:DAAA02059267
EMBL:DAAA02059268 EMBL:DAAA02059269 IPI:IPI00701621
Ensembl:ENSBTAT00000006447 Uniprot:F1MI97
Length = 790
Score = 137 (53.3 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 25/72 (34%), Positives = 36/72 (50%)
Query: 77 FVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGD 136
F+++G+ C DY R++GT+C C F E V+ A K YH CF C +C + PGD
Sbjct: 62 FIKNGEYLCTLDYQRMYGTRCHGCG-EFV-EGEVVTALGKTYHPNCFACTICKRPFPPGD 119
Query: 137 EFALREDGLFCK 148
C+
Sbjct: 120 RVTFNGRDCLCQ 131
Score = 124 (48.7 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 27/81 (33%), Positives = 41/81 (50%)
Query: 79 RDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEF 138
+DG YC++DY LFG KCE C+ + V+ A +K YH C C C + G+E
Sbjct: 191 KDGAPYCEKDYQGLFGVKCEACHQFITGK--VLEAGDKHYHPSCARCSRCNQMFTEGEEM 248
Query: 139 ALREDGLF---CKDDHEGMDK 156
L+ ++ CK + +K
Sbjct: 249 YLQGSTVWHPDCKQSTKTEEK 269
Score = 117 (46.2 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 31/117 (26%), Positives = 50/117 (42%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCG I + L +A + +WH C +C C + L +DG YC++DY
Sbjct: 150 CAGCGRDIKNGQAL-LALEKQWHLGCFKCKSCGKVLTGEYIS--KDGAPYCEKDYQGLFG 206
Query: 67 NQFLDENCTCFVRDGKTYCKRD-YVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQC 122
+ E C F+ GK D + +C +CN F + + + ++H C
Sbjct: 207 VKC--EACHQFIT-GKVLEAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDC 260
Score = 58 (25.5 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 16/55 (29%), Positives = 24/55 (43%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
C CG + +LRV +H C C C L + F+++G+ C DY
Sbjct: 23 CHKCGEPCKGE-VLRVQTK-HFHIKCFTCKVCGCDLAQG-GFFIKNGEYLCTLDY 74
>UNIPROTKB|F1S4V5 [details] [associations]
symbol:ABLIM1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0015629 "actin
cytoskeleton" evidence=IEA] [GO:0007411 "axon guidance"
evidence=IEA] [GO:0003779 "actin binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0007010 "cytoskeleton
organization" evidence=IEA] Pfam:PF00412 InterPro:IPR001781
InterPro:IPR003128 Pfam:PF02209 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS51089 SMART:SM00132 SMART:SM00153 GO:GO:0007411
GO:GO:0007010 GO:GO:0046872 GO:GO:0015629 GO:GO:0008270
GO:GO:0045944 Gene3D:1.10.950.10 Gene3D:2.10.110.10 SUPFAM:SSF47050
GeneTree:ENSGT00700000104021 OMA:HHPSEKP EMBL:CT737312
EMBL:CT737314 EMBL:CU407061 Ensembl:ENSSSCT00000011650
Uniprot:F1S4V5
Length = 798
Score = 137 (53.3 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 25/72 (34%), Positives = 36/72 (50%)
Query: 77 FVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGD 136
F+++G+ C DY R++GT+C C F E V+ A K YH CF C +C + PGD
Sbjct: 68 FIKNGEYLCTLDYQRMYGTRCHGCG-EFV-EGEVVTALGKTYHPNCFACTICKRPFPPGD 125
Query: 137 EFALREDGLFCK 148
C+
Sbjct: 126 RVTFNGRDCLCQ 137
Score = 124 (48.7 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 27/81 (33%), Positives = 41/81 (50%)
Query: 79 RDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEF 138
+DG YC++DY LFG KCE C+ + V+ A +K YH C C C + G+E
Sbjct: 197 KDGAPYCEKDYQGLFGVKCEACHQFITGK--VLEAGDKHYHPSCARCSRCNQMFTEGEEM 254
Query: 139 ALREDGLF---CKDDHEGMDK 156
L+ ++ CK + +K
Sbjct: 255 YLQGSTVWHPDCKQSTKTEEK 275
Score = 118 (46.6 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 32/119 (26%), Positives = 51/119 (42%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S C GCG I + L +A + +WH C +C C + L +DG YC++DY
Sbjct: 154 SNCAGCGRDIKNGQAL-LALEKQWHLGCFKCKSCGKVLTGEYIS--KDGAPYCEKDYQGL 210
Query: 65 EKNQFLDENCTCFVRDGKTYCKRD-YVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQC 122
+ E C F+ GK D + +C +CN F + + + ++H C
Sbjct: 211 FGVKC--EACHQFIT-GKVLEAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDC 266
Score = 58 (25.5 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 16/55 (29%), Positives = 24/55 (43%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
C CG + +LRV +H C C C L + F+++G+ C DY
Sbjct: 29 CHKCGEPCKGE-VLRVQTK-HFHIKCFTCKVCGCDLAQG-GFFIKNGEYLCTLDY 80
>UNIPROTKB|Q5T6N4 [details] [associations]
symbol:ABLIM1 "Actin-binding LIM protein 1" species:9606
"Homo sapiens" [GO:0003779 "actin binding" evidence=IEA]
[GO:0007010 "cytoskeleton organization" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001781
InterPro:IPR003128 Pfam:PF02209 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS51089 SMART:SM00132 SMART:SM00153 GO:GO:0007010
GO:GO:0046872 GO:GO:0008270 EMBL:AL133384 EMBL:AL354873
EMBL:AL590109 UniGene:Hs.438236 UniGene:Hs.538331 HGNC:HGNC:78
HOVERGEN:HBG031499 ChiTaRS:ABLIM1 Gene3D:1.10.950.10
Gene3D:2.10.110.10 SUPFAM:SSF47050 HOGENOM:HOG000285997
IPI:IPI00515115 SMR:Q5T6N4 Ensembl:ENST00000277895 OMA:HHPSEKP
Uniprot:Q5T6N4
Length = 846
Score = 137 (53.3 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 25/72 (34%), Positives = 36/72 (50%)
Query: 77 FVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGD 136
F+++G+ C DY R++GT+C C F E V+ A K YH CF C +C + PGD
Sbjct: 138 FIKNGEYLCTLDYQRMYGTRCHGCG-EFV-EGEVVTALGKTYHPNCFACTICKRPFPPGD 195
Query: 137 EFALREDGLFCK 148
C+
Sbjct: 196 RVTFNGRDCLCQ 207
Score = 124 (48.7 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 27/81 (33%), Positives = 41/81 (50%)
Query: 79 RDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEF 138
+DG YC++DY LFG KCE C+ + V+ A +K YH C C C + G+E
Sbjct: 267 KDGAPYCEKDYQGLFGVKCEACHQFITGK--VLEAGDKHYHPSCARCSRCNQMFTEGEEM 324
Query: 139 ALREDGLF---CKDDHEGMDK 156
L+ ++ CK + +K
Sbjct: 325 YLQGSTVWHPDCKQSTKTEEK 345
Score = 122 (48.0 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 33/119 (27%), Positives = 51/119 (42%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S C GCG I + L +A D +WH C +C C + L +DG YC++DY
Sbjct: 224 SNCAGCGRDIKNGQAL-LALDKQWHLGCFKCKSCGKVLTGEYIS--KDGAPYCEKDYQGL 280
Query: 65 EKNQFLDENCTCFVRDGKTYCKRD-YVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQC 122
+ E C F+ GK D + +C +CN F + + + ++H C
Sbjct: 281 FGVKC--EACHQFIT-GKVLEAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDC 336
Score = 116 (45.9 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 33/130 (25%), Positives = 58/130 (44%)
Query: 34 RCAECHQFLDENCTCFVRDGKTY---------CKRDYVSSEKNQFLDENCTCFVRDGKTY 84
RC C +F++ + GKTY CKR + ++ F +C C + +
Sbjct: 157 RCHGCGEFVEGEVVTAL--GKTYHPNCFACTICKRPFPPGDRVTFNGRDCLCQLC-AQPM 213
Query: 85 CKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDG 144
F + C C + K ++ A +K +H+ CF C CGK L G E+ ++
Sbjct: 214 SSSPKETTFSSNCAGCGRDIKNGQALL-ALDKQWHLGCFKCKSCGKVLT-G-EYISKDGA 270
Query: 145 LFCKDDHEGM 154
+C+ D++G+
Sbjct: 271 PYCEKDYQGL 280
Score = 58 (25.5 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 16/55 (29%), Positives = 24/55 (43%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
C CG + +LRV +H C C C L + F+++G+ C DY
Sbjct: 99 CHKCGEPCKGE-VLRVQTK-HFHIKCFTCKVCGCDLAQG-GFFIKNGEYLCTLDY 150
>UNIPROTKB|F1PWQ6 [details] [associations]
symbol:ABLIM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0007010 "cytoskeleton organization" evidence=IEA] [GO:0003779
"actin binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001781
InterPro:IPR003128 Pfam:PF02209 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS51089 SMART:SM00132 SMART:SM00153 GO:GO:0007010
GO:GO:0046872 GO:GO:0008270 Gene3D:1.10.950.10 Gene3D:2.10.110.10
SUPFAM:SSF47050 GeneTree:ENSGT00700000104021 OMA:HHPSEKP
EMBL:AAEX03015541 EMBL:AAEX03015542 Ensembl:ENSCAFT00000018339
Uniprot:F1PWQ6
Length = 778
Score = 137 (53.3 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 25/72 (34%), Positives = 36/72 (50%)
Query: 77 FVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGD 136
F+++G+ C DY R++GT+C C F E V+ A K YH CF C +C + PGD
Sbjct: 138 FIKNGEYLCTLDYQRMYGTRCHGCG-EFV-EGEVVTALGKTYHPNCFACTICKRPFPPGD 195
Query: 137 EFALREDGLFCK 148
C+
Sbjct: 196 RVTFNGRDCLCQ 207
Score = 124 (48.7 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 27/81 (33%), Positives = 41/81 (50%)
Query: 79 RDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEF 138
+DG YC++DY LFG KCE C+ + V+ A +K YH C C C + G+E
Sbjct: 267 KDGAPYCEKDYQGLFGVKCEACHQFITGK--VLEAGDKHYHPSCARCSRCNQMFTEGEEM 324
Query: 139 ALREDGLF---CKDDHEGMDK 156
L+ ++ CK + +K
Sbjct: 325 YLQGSTVWHPDCKQSTKTEEK 345
Score = 118 (46.6 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 32/119 (26%), Positives = 51/119 (42%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S C GCG I + L +A + +WH C +C C + L +DG YC++DY
Sbjct: 224 SNCAGCGRDIKNGQAL-LALEKQWHLGCFKCKSCGKVLTGEYIS--KDGAPYCEKDYQGL 280
Query: 65 EKNQFLDENCTCFVRDGKTYCKRD-YVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQC 122
+ E C F+ GK D + +C +CN F + + + ++H C
Sbjct: 281 FGVKC--EACHQFIT-GKVLEAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDC 336
Score = 57 (25.1 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 16/55 (29%), Positives = 24/55 (43%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
C CG + +LRV +H C C C L + F+++G+ C DY
Sbjct: 99 CHKCGEPCKGE-VLRVQTR-HFHIKCFTCKVCGCDLAQG-GFFIKNGEYLCTLDY 150
>UNIPROTKB|F5H3S4 [details] [associations]
symbol:LMO3 "LIM domain only protein 3" species:9606 "Homo
sapiens" [GO:0008270 "zinc ion binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10 EMBL:AC007529
EMBL:AC007552 HGNC:HGNC:6643 IPI:IPI01011541 SMR:F5H3S4
Ensembl:ENST00000537757 Ensembl:ENST00000539534
Ensembl:ENST00000546281 Uniprot:F5H3S4
Length = 118
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 25/66 (37%), Positives = 38/66 (57%)
Query: 75 TCFVRDGKTYCKRDYVRLFGT--KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQL 132
T + + C+RDY+RLFG C C+ + VMRAK+ +YH+ CF C +C ++
Sbjct: 53 TLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRF 112
Query: 133 VPGDEF 138
GD+F
Sbjct: 113 CVGDKF 118
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDE-NCTCFVRDGKTYCKRDYV 62
C GC +I D+Y+L+ A D WH CL+CA C L E T + + C+RDY+
Sbjct: 13 CAGCNRKIKDRYLLK-ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYL 68
>UNIPROTKB|F1LWZ5 [details] [associations]
symbol:F1LWZ5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003779 "actin binding" evidence=IEA]
[GO:0007010 "cytoskeleton organization" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001781
InterPro:IPR003128 Pfam:PF02209 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS51089 SMART:SM00132 SMART:SM00153 GO:GO:0007411
GO:GO:0007010 GO:GO:0046872 GO:GO:0015629 GO:GO:0008270
GO:GO:0045944 Gene3D:1.10.950.10 Gene3D:2.10.110.10 SUPFAM:SSF47050
IPI:IPI00358533 Ensembl:ENSRNOT00000018647 ArrayExpress:F1LWZ5
Uniprot:F1LWZ5
Length = 781
Score = 135 (52.6 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 25/72 (34%), Positives = 35/72 (48%)
Query: 77 FVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGD 136
F+++G C DY R++GT+C C F E V+ A K YH CF C +C + PGD
Sbjct: 57 FIKNGDYLCTLDYQRMYGTRCHGCG-EFV-EGEVVTALGKTYHPNCFACTICKRPFPPGD 114
Query: 137 EFALREDGLFCK 148
C+
Sbjct: 115 RVTFNGRDCLCQ 126
Score = 125 (49.1 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 27/81 (33%), Positives = 41/81 (50%)
Query: 79 RDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEF 138
+DG YC++DY LFG KCE C+ + V+ A +K YH C C C + G+E
Sbjct: 186 KDGSPYCEKDYQGLFGVKCEACHQFITGK--VLEAGDKHYHPSCARCSRCNQMFTEGEEM 243
Query: 139 ALREDGLF---CKDDHEGMDK 156
L+ ++ CK + +K
Sbjct: 244 YLQGSTVWHPDCKQSTKTEEK 264
Score = 123 (48.4 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 33/119 (27%), Positives = 51/119 (42%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S C GCG I + L +A D +WH C +C C + L +DG YC++DY
Sbjct: 143 SNCAGCGRDIKNGQAL-LALDKQWHLGCFKCKSCGKVLTGEYIS--KDGSPYCEKDYQGL 199
Query: 65 EKNQFLDENCTCFVRDGKTYCKRD-YVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQC 122
+ E C F+ GK D + +C +CN F + + + ++H C
Sbjct: 200 FGVKC--EACHQFIT-GKVLEAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDC 255
Score = 108 (43.1 bits), Expect = 0.00086, P = 0.00086
Identities = 32/130 (24%), Positives = 57/130 (43%)
Query: 34 RCAECHQFLDENCTCFVRDGKTY---------CKRDYVSSEKNQFLDENCTCFVRDGKTY 84
RC C +F++ + GKTY CKR + ++ F +C C + +
Sbjct: 76 RCHGCGEFVEGEVVTAL--GKTYHPNCFACTICKRPFPPGDRVTFNGRDCLCQLC-AQPM 132
Query: 85 CKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDG 144
+ C C + K ++ A +K +H+ CF C CGK L G E+ ++
Sbjct: 133 SSSPKEATCSSNCAGCGRDIKNGQALL-ALDKQWHLGCFKCKSCGKVLT-G-EYISKDGS 189
Query: 145 LFCKDDHEGM 154
+C+ D++G+
Sbjct: 190 PYCEKDYQGL 199
Score = 56 (24.8 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 16/55 (29%), Positives = 23/55 (41%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
C CG + +LRV +H C C C L + F+++G C DY
Sbjct: 18 CHKCGEPCKGE-VLRVQTK-HFHIKCFTCKVCGCDLAQG-GFFIKNGDYLCTLDY 69
>ZFIN|ZDB-GENE-061212-3 [details] [associations]
symbol:limk1a "LIM domain kinase 1a" species:7955
"Danio rerio" [GO:0004672 "protein kinase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006468 "protein phosphorylation"
evidence=IEA] [GO:0016772 "transferase activity, transferring
phosphorus-containing groups" evidence=IEA] [GO:0016301 "kinase
activity" evidence=IEA] [GO:0016310 "phosphorylation" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] Pfam:PF00595
Pfam:PF00412 InterPro:IPR000719 InterPro:IPR001245
InterPro:IPR001478 InterPro:IPR001781 InterPro:IPR011009
InterPro:IPR017441 Pfam:PF07714 PRINTS:PR00109 PROSITE:PS00107
PROSITE:PS00478 PROSITE:PS50011 PROSITE:PS50023 PROSITE:PS50106
SMART:SM00132 SMART:SM00228 ZFIN:ZDB-GENE-061212-3 GO:GO:0005524
GO:GO:0046872 SUPFAM:SSF56112 GO:GO:0008270 GO:GO:0004672
Gene3D:2.10.110.10 SUPFAM:SSF50156 KO:K05743 HOVERGEN:HBG052328
EMBL:DQ679229 IPI:IPI00782816 RefSeq:NP_001036156.1
UniGene:Dr.103272 ProteinModelPortal:Q0PWB7 STRING:Q0PWB7
GeneID:735292 KEGG:dre:735292 CTD:735292 InParanoid:Q0PWB7
NextBio:20902662 Uniprot:Q0PWB7
Length = 648
Score = 132 (51.5 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 25/59 (42%), Positives = 35/59 (59%)
Query: 4 LSLCVGCGGQIHD-QYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
L +C GCG QI+D QY+ ++ D WH C RC EC L + +DG+ +CK+DY
Sbjct: 24 LPVCSGCGQQIYDDQYLQALSSD--WHTLCCRCCECGSSLSH--WYYEKDGRLFCKKDY 78
Score = 128 (50.1 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 34/110 (30%), Positives = 49/110 (44%)
Query: 35 CAECHQFL--DENCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRL 92
C+ C Q + D+ D T C R E L + +DG+ +CK+DY
Sbjct: 27 CSGCGQQIYDDQYLQALSSDWHTLCCR---CCECGSSLSH--WYYEKDGRLFCKKDYWAK 81
Query: 93 FGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALRE 142
FG C C+ +M A + YH +CF C+ CG + GD +AL E
Sbjct: 82 FGELCHGCSEPIST-GLIMVAGEQKYHPECFSCLSCGAFIGDGDTYALVE 130
Score = 46 (21.3 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 73 NCTCFVRDGKTYCKRDYVRLFGTKC 97
+C F+ DG TY + +L+ C
Sbjct: 115 SCGAFIGDGDTYALVERSKLYSGHC 139
>UNIPROTKB|Q6PVU4 [details] [associations]
symbol:Q6PVU4 "Lim1" species:9986 "Oryctolagus cuniculus"
[GO:0001071 "nucleic acid binding transcription factor activity"
evidence=ISS] [GO:0001655 "urogenital system development"
evidence=ISS] [GO:0001657 "ureteric bud development" evidence=ISS]
[GO:0001702 "gastrulation with mouth forming second" evidence=ISS]
[GO:0001705 "ectoderm formation" evidence=ISS] [GO:0001706
"endoderm formation" evidence=ISS] [GO:0001764 "neuron migration"
evidence=ISS] [GO:0001822 "kidney development" evidence=ISS]
[GO:0003714 "transcription corepressor activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=ISS] [GO:0007267 "cell-cell
signaling" evidence=ISS] [GO:0007389 "pattern specification
process" evidence=ISS] [GO:0008045 "motor neuron axon guidance"
evidence=ISS] [GO:0009653 "anatomical structure morphogenesis"
evidence=ISS] [GO:0009791 "post-embryonic development"
evidence=ISS] [GO:0009880 "embryonic pattern specification"
evidence=ISS] [GO:0009948 "anterior/posterior axis specification"
evidence=ISS] [GO:0009952 "anterior/posterior pattern
specification" evidence=ISS] [GO:0009953 "dorsal/ventral pattern
formation" evidence=ISS] [GO:0010468 "regulation of gene
expression" evidence=ISS] [GO:0010842 "retina layer formation"
evidence=ISS] [GO:0021527 "spinal cord association neuron
differentiation" evidence=ISS] [GO:0021549 "cerebellum development"
evidence=ISS] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=ISS] [GO:0021871 "forebrain
regionalization" evidence=ISS] [GO:0021937 "cerebellar Purkinje
cell-granule cell precursor cell signaling involved in regulation
of granule cell precursor cell proliferation" evidence=ISS]
[GO:0035846 "oviduct epithelium development" evidence=ISS]
[GO:0035847 "uterine epithelium development" evidence=ISS]
[GO:0040019 "positive regulation of embryonic development"
evidence=ISS] [GO:0043234 "protein complex" evidence=ISS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0048646 "anatomical structure
formation involved in morphogenesis" evidence=ISS] [GO:0048703
"embryonic viscerocranium morphogenesis" evidence=ISS] [GO:0060059
"embryonic retina morphogenesis in camera-type eye" evidence=ISS]
[GO:0060065 "uterus development" evidence=ISS] [GO:0060066 "oviduct
development" evidence=ISS] [GO:0060067 "cervix development"
evidence=ISS] [GO:0060068 "vagina development" evidence=ISS]
[GO:0060322 "head development" evidence=ISS] [GO:0060429
"epithelium development" evidence=ISS] [GO:0061205 "paramesonephric
duct development" evidence=ISS] [GO:0072049 "comma-shaped body
morphogenesis" evidence=ISS] [GO:0072050 "S-shaped body
morphogenesis" evidence=ISS] [GO:0072077 "renal vesicle
morphogenesis" evidence=ISS] [GO:0072178 "nephric duct
morphogenesis" evidence=ISS] [GO:0090009 "primitive streak
formation" evidence=ISS] [GO:0090190 "positive regulation of
branching involved in ureteric bud morphogenesis" evidence=ISS]
[GO:2000543 "positive regulation of gastrulation" evidence=ISS]
[GO:2000744 "positive regulation of anterior head development"
evidence=ISS] [GO:2000768 "positive regulation of nephron tubule
epithelial cell differentiation" evidence=ISS] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0003714 GO:GO:0045892 GO:GO:0001764
GO:GO:0045893 GO:GO:0043234 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0006366 GO:GO:0009791
GO:GO:0090190 GO:GO:0010842 GO:GO:0009953 GO:GO:0040019
GO:GO:0009880 GO:GO:0001657 GO:GO:0021527 GO:GO:0021702 HSSP:P10037
GO:GO:0060068 GO:GO:0090009 GO:GO:0060059 GO:GO:2000768
GO:GO:0048703 GO:GO:0060322 GO:GO:0001071 GO:GO:0001706
GO:GO:0001705 GO:GO:2000543 GO:GO:0072049 GO:GO:0072050
eggNOG:NOG257130 HOGENOM:HOG000231630 HOVERGEN:HBG006263
OrthoDB:EOG405S1F GO:GO:0021937 GO:GO:0021871 GO:GO:0072178
GO:GO:0061205 GO:GO:2000744 GO:GO:0072077 GO:GO:0060067
GO:GO:0035846 GO:GO:0035847 EMBL:AY575212 UniGene:Ocu.3134
ProteinModelPortal:Q6PVU4 Uniprot:Q6PVU4
Length = 348
Score = 150 (57.9 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 25/60 (41%), Positives = 38/60 (63%)
Query: 93 FGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLF-CKDDH 151
FGTKC C D V RA++K++H+ CF C++C KQL G+E + ++ F CK+D+
Sbjct: 1 FGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 60
>MGI|MGI:1194500 [details] [associations]
symbol:Ablim1 "actin-binding LIM protein 1" species:10090
"Mus musculus" [GO:0003779 "actin binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005856 "cytoskeleton" evidence=IEA] [GO:0007010
"cytoskeleton organization" evidence=IEA] [GO:0007411 "axon
guidance" evidence=IDA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0015629 "actin cytoskeleton" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0046872 "metal ion
binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001781
InterPro:IPR003128 Pfam:PF02209 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS51089 SMART:SM00132 SMART:SM00153 MGI:MGI:1194500
GO:GO:0005737 GO:GO:0007411 GO:GO:0003779 GO:GO:0007010
GO:GO:0046872 GO:GO:0015629 GO:GO:0008270 GO:GO:0045944 CTD:3983
eggNOG:NOG302299 HOVERGEN:HBG031499 KO:K07520 Gene3D:1.10.950.10
Gene3D:2.10.110.10 SUPFAM:SSF47050 EMBL:AF404774 EMBL:AF404775
EMBL:AF404776 EMBL:AK122196 EMBL:AK029371 IPI:IPI00356147
IPI:IPI00403221 IPI:IPI00463138 IPI:IPI00467530 IPI:IPI01007625
RefSeq:NP_001096647.1 RefSeq:NP_001096648.1 RefSeq:NP_848803.3
UniGene:Mm.217161 UniGene:Mm.446592 ProteinModelPortal:Q8K4G5
SMR:Q8K4G5 IntAct:Q8K4G5 STRING:Q8K4G5 PhosphoSite:Q8K4G5
PaxDb:Q8K4G5 PRIDE:Q8K4G5 Ensembl:ENSMUST00000099294
Ensembl:ENSMUST00000111524 Ensembl:ENSMUST00000111546 GeneID:226251
KEGG:mmu:226251 UCSC:uc008hzr.2 UCSC:uc008hzs.2 UCSC:uc008hzt.2
UCSC:uc008hzz.1 UCSC:uc009vbz.1 GeneTree:ENSGT00700000104021
HOGENOM:HOG000285997 InParanoid:Q8K4G5 NextBio:378072 Bgee:Q8K4G5
CleanEx:MM_ABLIM1 Genevestigator:Q8K4G5
GermOnline:ENSMUSG00000025085 Uniprot:Q8K4G5
Length = 861
Score = 135 (52.6 bits), Expect = 7.4e-08, P = 7.4e-08
Identities = 25/72 (34%), Positives = 35/72 (48%)
Query: 77 FVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGD 136
F+++G C DY R++GT+C C F E V+ A K YH CF C +C + PGD
Sbjct: 138 FIKNGDYLCTLDYQRMYGTRCHGCG-EFV-EGEVVTALGKTYHPNCFACTICKRPFPPGD 195
Query: 137 EFALREDGLFCK 148
C+
Sbjct: 196 RVTFNGRDCLCQ 207
Score = 125 (49.1 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 27/81 (33%), Positives = 41/81 (50%)
Query: 79 RDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEF 138
+DG YC++DY LFG KCE C+ + V+ A +K YH C C C + G+E
Sbjct: 267 KDGSPYCEKDYQGLFGVKCEACHQFITGK--VLEAGDKHYHPSCARCSRCNQMFTEGEEM 324
Query: 139 ALREDGLF---CKDDHEGMDK 156
L+ ++ CK + +K
Sbjct: 325 YLQGSTVWHPDCKQSTKTEEK 345
Score = 123 (48.4 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 33/119 (27%), Positives = 51/119 (42%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S C GCG I + L +A D +WH C +C C + L +DG YC++DY
Sbjct: 224 SNCAGCGRDIKNGQAL-LALDKQWHLGCFKCKSCGKVLTGEYIS--KDGSPYCEKDYQGL 280
Query: 65 EKNQFLDENCTCFVRDGKTYCKRD-YVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQC 122
+ E C F+ GK D + +C +CN F + + + ++H C
Sbjct: 281 FGVKC--EACHQFIT-GKVLEAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDC 336
Score = 56 (24.8 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 16/55 (29%), Positives = 23/55 (41%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
C CG + +LRV +H C C C L + F+++G C DY
Sbjct: 99 CHKCGEPCKGE-VLRVQTK-HFHIKCFTCKVCGCDLAQG-GFFIKNGDYLCTLDY 150
>UNIPROTKB|F1NB68 [details] [associations]
symbol:PXN "Paxillin" species:9031 "Gallus gallus"
[GO:0005856 "cytoskeleton" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0000187 "activation of MAPK activity"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005925 "focal adhesion" evidence=IEA] [GO:0006928 "cellular
component movement" evidence=IEA] [GO:0007010 "cytoskeleton
organization" evidence=IEA] [GO:0007229 "integrin-mediated
signaling pathway" evidence=IEA] [GO:0008013 "beta-catenin binding"
evidence=IEA] [GO:0017166 "vinculin binding" evidence=IEA]
[GO:0018108 "peptidyl-tyrosine phosphorylation" evidence=IEA]
[GO:0030027 "lamellipodium" evidence=IEA] [GO:0030032
"lamellipodium assembly" evidence=IEA] [GO:0034614 "cellular
response to reactive oxygen species" evidence=IEA] [GO:0048041
"focal adhesion assembly" evidence=IEA] [GO:0048754 "branching
morphogenesis of an epithelial tube" evidence=IEA] [GO:0051435 "BH4
domain binding" evidence=IEA] [GO:0060396 "growth hormone receptor
signaling pathway" evidence=IEA] Pfam:PF00412 InterPro:IPR001781
InterPro:IPR001904 PRINTS:PR00832 PROSITE:PS00478 PROSITE:PS50023
SMART:SM00132 GO:GO:0005886 GO:GO:0007010 GO:GO:0005856
GO:GO:0046872 GO:GO:0018108 GO:GO:0008270 GO:GO:0000187
GO:GO:0006928 GO:GO:0005925 GO:GO:0030027 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104021 GO:GO:0048041 GO:GO:0007229
GO:GO:0034614 GO:GO:0030032 GO:GO:0060396 IPI:IPI00585869
OMA:GFMAQGK EMBL:AADN02043198 Ensembl:ENSGALT00000011727
Uniprot:F1NB68
Length = 559
Score = 125 (49.1 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 30/102 (29%), Positives = 50/102 (49%)
Query: 53 GKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMR 112
GKT+ +V + + + F RDG+ YC++DY LF +C CN D V+
Sbjct: 342 GKTWHPEHFVCTHCQEEIGSR-NFFERDGQPYCEKDYHNLFSPRCYYCNGPIL--DKVVT 398
Query: 113 AKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
A ++ +H + F C CG P + F ++ +C+ D+ M
Sbjct: 399 ALDRTWHPEHFFCAQCGVFFGP-EGFHEKDGKAYCRKDYFDM 439
Score = 114 (45.2 bits), Expect = 9.6e-10, Sum P(2) = 9.6e-10
Identities = 24/71 (33%), Positives = 37/71 (52%)
Query: 79 RDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEF 138
+DGK YC++DY +F KC C E+++ A N ++H +CF C C + G F
Sbjct: 426 KDGKAYCRKDYFDMFAPKCGGCARAIL-ENYIS-ALNTLWHPECFVCRECFTPFINGSFF 483
Query: 139 ALREDGL-FCK 148
DG +C+
Sbjct: 484 --EHDGQPYCE 492
Score = 93 (37.8 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 20/55 (36%), Positives = 26/55 (47%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
C C G I D+ + A D WH CA+C F +DGK YC++DY
Sbjct: 385 CYYCNGPILDKVV--TALDRTWHPEHFFCAQCGVFFGPE-GFHEKDGKAYCRKDY 436
Score = 87 (35.7 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 23/77 (29%), Positives = 34/77 (44%)
Query: 73 NCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQL 132
N + F DG+ YC+ Y G+ C C + A K +H + F C C KQL
Sbjct: 479 NGSFFEHDGQPYCEVHYHERRGSLCSGCQKPITGR--CITAMGKKFHPEHFVCAFCLKQL 536
Query: 133 VPGDEFALREDGLFCKD 149
G F + D +C++
Sbjct: 537 NKGT-FKEQNDKPYCQN 552
Score = 77 (32.2 bits), Expect = 9.6e-10, Sum P(2) = 9.6e-10
Identities = 17/56 (30%), Positives = 24/56 (42%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+C C I Q + A WH C C + + F RDG+ YC++DY
Sbjct: 325 VCGACKKPIAGQVV--TAMGKTWHPEHFVCTHCQEEIGSR-NFFERDGQPYCEKDY 377
>UNIPROTKB|P49024 [details] [associations]
symbol:PXN "Paxillin" species:9031 "Gallus gallus"
[GO:0007160 "cell-matrix adhesion" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005856 "cytoskeleton" evidence=IEA] [GO:0005925 "focal
adhesion" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
Pfam:PF00412 InterPro:IPR001781 InterPro:IPR001904 PRINTS:PR00832
PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132 GO:GO:0005737
GO:GO:0005856 GO:GO:0046872 GO:GO:0008270 GO:GO:0005925
Gene3D:2.10.110.10 GO:GO:0007160 PDB:2L6F PDB:2L6G PDB:2L6H
PDBsum:2L6F PDBsum:2L6G PDBsum:2L6H eggNOG:NOG267887
HOGENOM:HOG000018764 HOVERGEN:HBG001512 OrthoDB:EOG4TMR25 KO:K05760
EMBL:U14589 EMBL:L30099 IPI:IPI00585869 PIR:B55933
RefSeq:NP_990315.1 UniGene:Gga.4056 ProteinModelPortal:P49024
SMR:P49024 IntAct:P49024 STRING:P49024 GeneID:395832
KEGG:gga:395832 CTD:5829 InParanoid:P49024 NextBio:20815900
Uniprot:P49024
Length = 559
Score = 125 (49.1 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 30/102 (29%), Positives = 50/102 (49%)
Query: 53 GKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMR 112
GKT+ +V + + + F RDG+ YC++DY LF +C CN D V+
Sbjct: 342 GKTWHPEHFVCTHCQEEIGSR-NFFERDGQPYCEKDYHNLFSPRCYYCNGPIL--DKVVT 398
Query: 113 AKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
A ++ +H + F C CG P + F ++ +C+ D+ M
Sbjct: 399 ALDRTWHPEHFFCAQCGVFFGP-EGFHEKDGKAYCRKDYFDM 439
Score = 114 (45.2 bits), Expect = 9.6e-10, Sum P(2) = 9.6e-10
Identities = 24/71 (33%), Positives = 37/71 (52%)
Query: 79 RDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEF 138
+DGK YC++DY +F KC C E+++ A N ++H +CF C C + G F
Sbjct: 426 KDGKAYCRKDYFDMFAPKCGGCARAIL-ENYIS-ALNTLWHPECFVCRECFTPFINGSFF 483
Query: 139 ALREDGL-FCK 148
DG +C+
Sbjct: 484 --EHDGQPYCE 492
Score = 93 (37.8 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 20/55 (36%), Positives = 26/55 (47%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
C C G I D+ + A D WH CA+C F +DGK YC++DY
Sbjct: 385 CYYCNGPILDKVV--TALDRTWHPEHFFCAQCGVFFGPE-GFHEKDGKAYCRKDY 436
Score = 87 (35.7 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 23/77 (29%), Positives = 34/77 (44%)
Query: 73 NCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQL 132
N + F DG+ YC+ Y G+ C C + A K +H + F C C KQL
Sbjct: 479 NGSFFEHDGQPYCEVHYHERRGSLCSGCQKPITGR--CITAMGKKFHPEHFVCAFCLKQL 536
Query: 133 VPGDEFALREDGLFCKD 149
G F + D +C++
Sbjct: 537 NKGT-FKEQNDKPYCQN 552
Score = 77 (32.2 bits), Expect = 9.6e-10, Sum P(2) = 9.6e-10
Identities = 17/56 (30%), Positives = 24/56 (42%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+C C I Q + A WH C C + + F RDG+ YC++DY
Sbjct: 325 VCGACKKPIAGQVV--TAMGKTWHPEHFVCTHCQEEIGSR-NFFERDGQPYCEKDY 377
WARNING: HSPs involving 247 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.329 0.144 0.495 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 191 164 0.00088 107 3 11 22 0.42 31
30 0.45 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 497
No. of states in DFA: 608 (65 KB)
Total size of DFA: 186 KB (2104 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 18.28u 0.07s 18.35t Elapsed: 00:00:03
Total cpu time: 18.32u 0.07s 18.39t Elapsed: 00:00:03
Start: Thu Aug 15 16:39:36 2013 End: Thu Aug 15 16:39:39 2013
WARNINGS ISSUED: 2