RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4072
(191 letters)
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3;
intramolecular (fusion) protein-protein complex, protein
binding/transcription complex; NMR {Mus musculus}
Length = 182
Score = 132 bits (333), Expect = 1e-39
Identities = 57/153 (37%), Positives = 74/153 (48%), Gaps = 32/153 (20%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
+ +C GC I D++IL+ A D WH+ CL+C++CH L E
Sbjct: 57 TPEIPMCAGCDQHILDRFILK-ALDRHWHSKCLKCSDCHVPLAE---------------- 99
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHV 120
CF R YCK D+ + FGTKC C L V RA++ +YH+
Sbjct: 100 --------------RCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHL 145
Query: 121 QCFCCVVCGKQLVPGDEFALREDG-LFCKDDHE 152
CF CVVC +QL GDEF L ED L CK D+E
Sbjct: 146 HCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 178
Score = 56.8 bits (137), Expect = 1e-10
Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 3/91 (3%)
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQ 121
++ +N D G C C+ + + F+++A ++ +H +
Sbjct: 28 ITRLENTQFDAANGIDDEGGSGGHMGSGGTPEIPMCAGCDQHIL-DRFILKALDRHWHSK 86
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHE 152
C C C L + R + ++CKDD
Sbjct: 87 CLKCSDCHVPL--AERCFSRGESVYCKDDFF 115
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene,
transcription, developmental protein; 2.40A {Homo
sapiens} PDB: 2xjz_A
Length = 131
Score = 129 bits (326), Expect = 5e-39
Identities = 46/157 (29%), Positives = 64/157 (40%), Gaps = 30/157 (19%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
L C GC I D+Y L+ A D WH CL C C L E
Sbjct: 2 LLTCGGCQQNIGDRYFLK-AIDQYWHEDCLSCDLCGCRLGEVG----------------- 43
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQ 121
+ + G+ C+RDY+RLFG C C+ + + MR K+K+YH++
Sbjct: 44 ----------RRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLE 93
Query: 122 CFCCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSS 158
CF C C K GD + L + C+ D K +
Sbjct: 94 CFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKIN 130
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein
ISL-1; protein-protein complex, LIM domain, Zn finger,
activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Length = 169
Score = 129 bits (327), Expect = 7e-39
Identities = 57/153 (37%), Positives = 74/153 (48%), Gaps = 32/153 (20%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +C GC I D++IL+ A D WH+ CL+C++CH L E
Sbjct: 5 EIPMCAGCDQHILDRFILK-ALDRHWHSKCLKCSDCHVPLAE------------------ 45
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQC 122
CF R YCK D+ + FGTKC C L V RA++ +YH+ C
Sbjct: 46 ------------RCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHC 93
Query: 123 FCCVVCGKQLVPGDEFALREDG-LFCKDDHEGM 154
F CVVC +QL GDEF L ED L CK D+E
Sbjct: 94 FACVVCKRQLATGDEFYLMEDSRLVCKADYETA 126
Score = 57.5 bits (139), Expect = 5e-11
Identities = 21/125 (16%), Positives = 31/125 (24%), Gaps = 29/125 (23%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C C I ++R A D +H C C C + L +
Sbjct: 68 CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQL---------------------ATG 106
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
++F + D + CK DY M A + H
Sbjct: 107 DEF------YLMEDSRLVCKADYETAKQGGSGGSGG--SGGGTPMVAASPERHDGGLQAN 158
Query: 127 VCGKQ 131
Q
Sbjct: 159 PVEVQ 163
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding
protein 1; B-tandem zipper, protein binding; 1.30A {Mus
musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB:
2dfy_X 2xjz_I 2xjy_B
Length = 188
Score = 117 bits (294), Expect = 1e-33
Identities = 48/150 (32%), Positives = 68/150 (45%), Gaps = 30/150 (20%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GCGG+I D+++L A D WH+ CL+C+ C
Sbjct: 8 CAGCGGKIADRFLLY-AMDSYWHSRCLKCSSCQA-------------------------- 40
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFG--TKCEKCNLNFKREDFVMRAKNKIYHVQCFC 124
Q D + + + G C+ DY+RLFG C C + + VMRA+ +YH++CF
Sbjct: 41 -QLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFT 99
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
C C +LVPGD F LFC+ D
Sbjct: 100 CSTCRNRLVPGDRFHYINGSLFCEHDRPTA 129
Score = 45.0 bits (106), Expect = 2e-06
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 92 LFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVP-GDEFALREDGLFCKDD 150
L +C C + F++ A + +H +C C C QL G + + C++D
Sbjct: 3 LSWKRCAGCGGKIA-DRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRND 61
Query: 151 HE 152
+
Sbjct: 62 YI 63
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1,
LIM domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Length = 101
Score = 92.9 bits (231), Expect = 4e-25
Identities = 25/123 (20%), Positives = 33/123 (26%), Gaps = 29/123 (23%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
CV C I + WH C RCA+C L
Sbjct: 8 CVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANET-------------------- 47
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCV 126
+D K C + R KC+ C D + K ++H CF
Sbjct: 48 ---------FVAKDNKILCNKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFSGP 98
Query: 127 VCG 129
G
Sbjct: 99 SSG 101
Score = 54.3 bits (131), Expect = 2e-10
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 93 FGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHE 152
+ C +C + + KN+ +H CF C C L + F +++ + C
Sbjct: 4 GSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLA-NETFVAKDNKILCNKCTT 62
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the
N-terminal LIM domain of LMO4...; fusion protein, LMO
proteins, metal binding protein; NMR {Mus musculus}
SCOP: g.39.1.3 g.39.1.3
Length = 122
Score = 92.7 bits (230), Expect = 8e-25
Identities = 33/156 (21%), Positives = 56/156 (35%), Gaps = 42/156 (26%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
C GCGG+I D+++L A D WH+ CL+C+ C L
Sbjct: 5 WKRCAGCGGKIADRFLLY-AMDSYWHSRCLKCSSCQAQLG-------------------- 43
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
D + + + G C+ DY+RLFG +
Sbjct: 44 -------DIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGH--------------MGSGG 82
Query: 124 CCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSN 159
+V G+ + G EF ++ L + ++ D ++
Sbjct: 83 DVMVVGEPTLMGGEFGDEDERLITRLENTQFDAANG 118
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion,
acrosom; 2.62A {Homo sapiens}
Length = 126
Score = 89.8 bits (223), Expect = 1e-23
Identities = 31/148 (20%), Positives = 47/148 (31%), Gaps = 33/148 (22%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C GC I + A + WH C +C L
Sbjct: 6 CAGCDELIFSNEYTQ-AENQNWHLKHFCCFDCDSILAGEI-------------------- 44
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYH--VQCFC 124
+ + K CK YV+ C+ C+ E + N +H +CF
Sbjct: 45 ---------YVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFL 95
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHE 152
C C K L+ G +F E +FC + +
Sbjct: 96 CSCCSKCLI-GQKFMPVEGMVFCSVECK 122
Score = 33.5 bits (77), Expect = 0.011
Identities = 14/95 (14%), Positives = 24/95 (25%), Gaps = 31/95 (32%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAA--CLRCAECHQFLDENCTCFVRDGKTYCK 58
K +C GC I + + WHA+ C C+ C + L
Sbjct: 60 KNHAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCL---------------- 103
Query: 59 RDYVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLF 93
+G +C + +
Sbjct: 104 -------------IGQKFMPVEGMVFCSVECKKRM 125
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1;
LMO2(LIM2)-LDB1(LID), chimera, fusion protein,
oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Length = 123
Score = 80.9 bits (199), Expect = 3e-20
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 89 YVRLFGTK--CEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLF 146
Y+RLFG C C+ + + MR K+K+YH++CF C C K GD + L +
Sbjct: 1 YLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIV 60
Query: 147 CKDDHEGMDKSSNGENNNNN 166
C+ D K + G +
Sbjct: 61 CEQDIYEWTKINGGSGGSGG 80
Score = 52.8 bits (126), Expect = 1e-09
Identities = 12/57 (21%), Positives = 21/57 (36%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
LC C +I + D +H C +CA C + + + C++D
Sbjct: 9 GLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDI 65
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1;
LIM-interaction-domain (LID), metal binding protein; NMR
{Mus musculus} SCOP: g.39.1.3 g.39.1.3
Length = 114
Score = 79.3 bits (195), Expect = 8e-20
Identities = 33/160 (20%), Positives = 53/160 (33%), Gaps = 48/160 (30%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
L C GC I D+Y L+ A D WH CL C C L E
Sbjct: 3 LLTCGGCQQNIGDRYFLK-AIDQYWHEDCLSCDLCGCRLGEVGR---------------- 45
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
+ + G+ C+RDY+RL G+
Sbjct: 46 -----------RLYYKLGRKLCRRDYLRLGGSGGHMG--------------------SGG 74
Query: 124 CCVVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENN 163
+V G+ + G EF ++ L + ++ D ++ ++
Sbjct: 75 DVMVVGEPTLMGGEFGDEDERLITRLENTQFDAANGIDDE 114
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 81
Score = 72.1 bits (177), Expect = 2e-17
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 81 GKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFAL 140
+DY FG C C+L M A YH +CF C+ C + GD +AL
Sbjct: 2 SSGSSGKDYWGKFGEFCHGCSLLM--TGPFMVAGEFKYHPECFACMSCKVIIEDGDAYAL 59
Query: 141 REDG-LFCKDDHE 152
+ L+C H
Sbjct: 60 VQHATLYCGKCHN 72
Score = 37.1 bits (86), Expect = 3e-04
Identities = 13/93 (13%), Positives = 24/93 (25%), Gaps = 29/93 (31%)
Query: 6 LCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSE 65
C GC + ++ VA + ++H C C C
Sbjct: 17 FCHGCSLLMTGPFM--VAGEFKYHPECFACMSCKV------------------------- 49
Query: 66 KNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCE 98
D + V+ YC + + +
Sbjct: 50 --IIEDGDAYALVQHATLYCGKCHNEVVSGPSS 80
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4;
protein-protein interaction, LIM-interaction DOM LMO4,
RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo
sapiens}
Length = 123
Score = 71.7 bits (175), Expect = 1e-16
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 28/91 (30%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVS 63
C GCGG+I D+++L A D WH+ CL+C+ C L
Sbjct: 61 WKRCAGCGGKIADRFLLY-AMDSYWHSRCLKCSSCQAQLG-------------------- 99
Query: 64 SEKNQFLDENCTCFVRDGKTYCKRDYVRLFG 94
D + + + G C+ DY+RLFG
Sbjct: 100 -------DIGTSSYTKSGMILCRNDYIRLFG 123
Score = 44.3 bits (104), Expect = 2e-06
Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 2/75 (2%)
Query: 79 RDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLV-PGDE 137
G + L +C C + F++ A + +H +C C C QL G
Sbjct: 46 GGGGSGGHMGSGGLSWKRCAGCGGKIA-DRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTS 104
Query: 138 FALREDGLFCKDDHE 152
+ + C++D+
Sbjct: 105 SYTKSGMILCRNDYI 119
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 80
Score = 69.8 bits (171), Expect = 2e-16
Identities = 23/97 (23%), Positives = 30/97 (30%), Gaps = 31/97 (31%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
R S C GC +I L A D +WH +C +C C L
Sbjct: 12 IRGPSHCAGCKEEIKHGQSLL-ALDKQWHVSCFKCQTCSVILTG---------------- 54
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKC 97
+DG YC+ DY FG+
Sbjct: 55 --------------EYISKDGVPYCESDYHAQFGSGP 77
Score = 44.7 bits (106), Expect = 4e-07
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 86 KRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGL 145
+ + C C + + A +K +HV CF C C L E+ ++
Sbjct: 7 GKPIKIRGPSHCAGCKEEI-KHGQSLLALDKQWHVSCFKCQTCSVIL--TGEYISKDGVP 63
Query: 146 FCKDD 150
+C+ D
Sbjct: 64 YCESD 68
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain,
ablim2, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 81
Score = 67.5 bits (165), Expect = 1e-15
Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 88 DYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFC 147
DY RL+GT+C C+ E V+ A K YH CF C VC PGD C
Sbjct: 9 DYQRLYGTRCFSCDQFI--EGEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMC 66
Query: 148 KDDHE 152
+
Sbjct: 67 QKCSL 71
Score = 41.7 bits (98), Expect = 7e-06
Identities = 10/55 (18%), Positives = 16/55 (29%), Gaps = 2/55 (3%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
C C I + + A +H C CA C + C++
Sbjct: 18 CFSCDQFIEGEVV--SALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCS 70
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle;
NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Length = 192
Score = 68.9 bits (168), Expect = 4e-15
Identities = 31/166 (18%), Positives = 49/166 (29%), Gaps = 24/166 (14%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS-- 64
C C ++ + +H +C C C + LD + T V + YCK Y
Sbjct: 10 CGVCQKAVYFAEEV-QCEGSSFHKSCFLCMVCKKNLD-STTVAVHGDEIYCKSCYGKKYG 67
Query: 65 ------------------EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKR 106
E E + C +C
Sbjct: 68 PKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYA 127
Query: 107 EDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHE 152
+ V+ K +H CF C CGK L A ++ ++CK +
Sbjct: 128 AEKVI-GAGKSWHKSCFRCAKCGKSLEST-TLADKDGEIYCKGCYA 171
Score = 43.9 bits (103), Expect = 7e-06
Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 30/98 (30%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C CG ++ + + WH +C RCA+C + L+
Sbjct: 118 CPRCGQAVYAAEKV-IGAGKSWHKSCFRCAKCGKSLE----------------------- 153
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNF 104
+ T +DG+ YCK Y + FG K
Sbjct: 154 ------STTLADKDGEIYCKGCYAKNFGPKGFGFGQGA 185
Score = 41.5 bits (97), Expect = 4e-05
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 94 GTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEG 153
G KC C + V + + +H CF C+VC K L A+ D ++CK +
Sbjct: 7 GKKCGVCQKAVYFAEEV-QCEGSSFHKSCFLCMVCKKNLDSTT-VAVHGDEIYCKSCYGK 64
Query: 154 MDKS 157
Sbjct: 65 KYGP 68
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM
domains protein 1, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 65.1 bits (159), Expect = 1e-14
Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 1/72 (1%)
Query: 81 GKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFAL 140
+ R KC+ C D + K ++H CF C C + + F
Sbjct: 2 SSGSSGKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVI-GTGSFFP 60
Query: 141 REDGLFCKDDHE 152
+ + +C HE
Sbjct: 61 KGEDFYCVTCHE 72
Score = 38.9 bits (91), Expect = 6e-05
Identities = 14/97 (14%), Positives = 21/97 (21%), Gaps = 29/97 (29%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
+ C GC I WH C C+ C Q +
Sbjct: 12 REDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTG--------------- 56
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKC 97
+ F + YC + F +
Sbjct: 57 --------------SFFPKGEDFYCVTCHETKFASGP 79
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein
2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 82
Score = 62.1 bits (151), Expect = 1e-13
Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
Query: 81 GKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFAL 140
Y F C +C + + +++ +H CF C C + L + F
Sbjct: 2 SSGSSGPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLA-DEPFTC 60
Query: 141 REDGLFCKDDHE 152
++ L C D +
Sbjct: 61 QDSELLCNDCYC 72
Score = 39.8 bits (93), Expect = 4e-05
Identities = 14/91 (15%), Positives = 20/91 (21%), Gaps = 29/91 (31%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C C I D +H C RC C + L
Sbjct: 18 CAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSL------------------------ 53
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKC 97
+ +D + C Y F +
Sbjct: 54 -----ADEPFTCQDSELLCNDCYCSAFSSGP 79
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1,
skeletal muscle LIM- protein 1, SLIM 1, structural
genomics NPPSFA; NMR {Homo sapiens}
Length = 77
Score = 61.3 bits (149), Expect = 3e-13
Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 4/77 (5%)
Query: 81 GKTYCKRDYVRLFGTKCEKCN---LNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDE 137
Y KC C F + V+ + + +H CF C C L
Sbjct: 2 SSGSSGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLA-NKR 60
Query: 138 FALREDGLFCKDDHEGM 154
F ++ ++C D + +
Sbjct: 61 FVFHQEQVYCPDCAKKL 77
Score = 32.8 bits (75), Expect = 0.010
Identities = 13/58 (22%), Positives = 15/58 (25%), Gaps = 4/58 (6%)
Query: 7 CVGCGGQIHDQYILR---VAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
C GC I WH C C +C L N + YC
Sbjct: 18 CAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNL-ANKRFVFHQEQVYCPDCA 74
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 80
Score = 59.3 bits (144), Expect = 2e-12
Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 81 GKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFAL 140
+D++ +F KC CN + + A + ++H +CF C C F
Sbjct: 2 SSGSSGKDFLAMFSPKCGGCNRPV--LENYLSAMDTVWHPECFVCGDCFTSF-STGSFFE 58
Query: 141 REDGLFCKDDHE 152
+ FC+ +
Sbjct: 59 LDGRPFCELHYH 70
Score = 45.0 bits (107), Expect = 4e-07
Identities = 17/97 (17%), Positives = 25/97 (25%), Gaps = 31/97 (31%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
C GC + + Y+ A D WH C C +C
Sbjct: 12 AMFSPKCGGCNRPVLENYL--SAMDTVWHPECFVCGDCFTSFSTGS-------------- 55
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKC 97
F DG+ +C+ Y G+
Sbjct: 56 ---------------FFELDGRPFCELHYHHRRGSGP 77
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 80
Score = 57.7 bits (140), Expect = 6e-12
Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Query: 81 GKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFAL 140
Y F +C +C+ + + +++ +H +C C C L G +F
Sbjct: 2 SSGSSGPCYENKFAPRCARCSKTLTQG--GVTYRDQPWHRECLVCTGCQTPL-AGQQFTS 58
Query: 141 REDGLFCKDDHE 152
R++ +C
Sbjct: 59 RDEDPYCVACFG 70
Score = 38.9 bits (91), Expect = 6e-05
Identities = 17/91 (18%), Positives = 23/91 (25%), Gaps = 31/91 (34%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C C + + D WH CL C C L G+ +
Sbjct: 18 CARCSKTLTQGGV--TYRDQPWHRECLVCTGCQTPLA---------GQQF---------- 56
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKC 97
RD YC + LF +
Sbjct: 57 ----------TSRDEDPYCVACFGELFASGP 77
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain,
OPA-interacting protein 1, zyxin related protein 1
(ZRP-1), structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 81
Score = 57.8 bits (140), Expect = 7e-12
Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
L C C I D+ + A +H C C CH+ LD + +C D
Sbjct: 12 VATLEKCATCSQPILDRIL--RAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIED 69
Query: 61 Y 61
+
Sbjct: 70 F 70
Score = 45.8 bits (109), Expect = 2e-07
Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 2/69 (2%)
Query: 84 YCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALRED 143
KC C+ D ++RA K YH CF CVVC + L
Sbjct: 5 SSGEGCYVATLEKCATCSQPIL--DRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATS 62
Query: 144 GLFCKDDHE 152
+ C +D
Sbjct: 63 QIHCIEDFH 71
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 77
Score = 55.5 bits (134), Expect = 4e-11
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 85 CKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDG 144
+ L CE+C F + ++ + ++YH QCF C C +Q P F E
Sbjct: 2 SEFMANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQF-PEGLFYEFEGR 60
Query: 145 LFCKDDHE 152
+C+ D +
Sbjct: 61 KYCEHDFQ 68
Score = 34.7 bits (80), Expect = 0.002
Identities = 15/90 (16%), Positives = 25/90 (27%), Gaps = 29/90 (32%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
+ C C G + + +H C CA+C Q
Sbjct: 12 ATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQF---------------------- 49
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFG 94
+ +G+ YC+ D+ LF
Sbjct: 50 -------PEGLFYEFEGRKYCEHDFQMLFA 72
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1;
ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK,
IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Length = 72
Score = 55.5 bits (134), Expect = 4e-11
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 88 DYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFC 147
+ CE+C F + ++ + ++YH QCF C C +Q P F E +C
Sbjct: 5 YFQGSASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQF-PEGLFYEFEGRKYC 63
Query: 148 KDDHE 152
+ D +
Sbjct: 64 EHDFQ 68
Score = 36.2 bits (84), Expect = 6e-04
Identities = 15/88 (17%), Positives = 24/88 (27%), Gaps = 29/88 (32%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C C G + + +H C CA+C Q
Sbjct: 14 CERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQF------------------------ 49
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFG 94
+ +G+ YC+ D+ LF
Sbjct: 50 -----PEGLFYEFEGRKYCEHDFQMLFA 72
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 54.7 bits (132), Expect = 9e-11
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 93 FGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHE 152
+ C++C M K +H CF C C + + F +++ FC +E
Sbjct: 4 GSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPI-GTKSFIPKDNQNFCVPCYE 62
Score = 38.9 bits (91), Expect = 7e-05
Identities = 12/91 (13%), Positives = 19/91 (20%), Gaps = 29/91 (31%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
C C I WH C C C Q +
Sbjct: 8 CQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTK--------------------- 46
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKC 97
+ +D + +C Y + +
Sbjct: 47 --------SFIPKDNQNFCVPCYEKQHASGP 69
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 72
Score = 52.8 bits (127), Expect = 4e-10
Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 1/60 (1%)
Query: 93 FGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHE 152
+ C C + + +H CF C C + L F + +C +E
Sbjct: 4 GSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLG-SRSFVPDKGAHYCVPCYE 62
Score = 38.1 bits (89), Expect = 1e-04
Identities = 16/93 (17%), Positives = 21/93 (22%), Gaps = 29/93 (31%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
S C CG + WH C C+ C Q L
Sbjct: 6 SGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLG--------------------- 44
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKC 97
+ + G YC Y F +
Sbjct: 45 --------SRSFVPDKGAHYCVPCYENKFASGP 69
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting
protein 1, zyxin related protein 1 (ZRP-1), structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 52.1 bits (125), Expect = 8e-10
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 96 KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHE 152
C C + + + A ++++HV CF C C QL G F E +C+ +
Sbjct: 7 GCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQL-RGQHFYAVERRAYCEGCYV 62
Score = 42.8 bits (101), Expect = 3e-06
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 4 LSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
S C GCG + VA D +H C C+ C L + + + YC+ Y
Sbjct: 5 SSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQL-RGQHFYAVERRAYCEGCY 61
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1,
LIM domain protein CLP-36, contractIle protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 79
Score = 50.9 bits (122), Expect = 2e-09
Identities = 14/95 (14%), Positives = 24/95 (25%), Gaps = 31/95 (32%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+L +C CG I ++ D H C C +C L +
Sbjct: 14 KLPMCDKCGTGIVGVFV--KLRDRHRHPECYVCTDCGTNLKQKG---------------- 55
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKC 97
F + + YC++
Sbjct: 56 -------------HFFVEDQIYCEKHARERVSGPS 77
Score = 42.4 bits (100), Expect = 3e-06
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 93 FGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHE 152
C+KC ++ +++ H +C+ C CG L ED ++C+
Sbjct: 14 KLPMCDKCGTGI--VGVFVKLRDRHRHPECYVCTDCGTNLK-QKGHFFVEDQIYCEKHAR 70
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM
domain 3, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: g.39.1.3 g.39.1.3
Length = 89
Score = 50.2 bits (120), Expect = 6e-09
Identities = 18/96 (18%), Positives = 27/96 (28%), Gaps = 31/96 (32%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+R+ LC CG I + A D H C CA+C+ L +
Sbjct: 23 QRMPLCDKCGSGIVGAVV--KARDKYRHPECFVCADCNLNLKQKG--------------- 65
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKC 97
F +G+ YC+
Sbjct: 66 --------------YFFVEGELYCETHARARTSGPS 87
Score = 41.7 bits (98), Expect = 8e-06
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 96 KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDD 150
C+KC V++A++K H +CF C C L + E L+C+
Sbjct: 27 LCDKCGSGI--VGAVVKARDKYRHPECFVCADCNLNLK-QKGYFFVEGELYCETH 78
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 90
Score = 50.1 bits (120), Expect = 6e-09
Identities = 14/77 (18%), Positives = 24/77 (31%), Gaps = 4/77 (5%)
Query: 77 FVRDGKTYCKRDY-VRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPG 135
+D C CN + + A K +H + F C C +
Sbjct: 7 GDQDTLVQRAEHIPAGKRTPMCAHCNQVIRGP--FLVALGKSWHPEEFNCAHCKNTM-AY 63
Query: 136 DEFALREDGLFCKDDHE 152
F + L+C+ +E
Sbjct: 64 IGFVEEKGALYCELCYE 80
Score = 46.3 bits (110), Expect = 2e-07
Identities = 16/96 (16%), Positives = 25/96 (26%), Gaps = 31/96 (32%)
Query: 2 RRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+R +C C I ++ VA WH CA C + +
Sbjct: 23 KRTPMCAHCNQVIRGPFL--VALGKSWHPEEFNCAHCKNTMA---------YIGF----- 66
Query: 62 VSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKC 97
G YC+ Y + F +
Sbjct: 67 ---------------VEEKGALYCELCYEKFFASGP 87
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN
actin- interacting protein, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 76
Score = 49.1 bits (117), Expect = 1e-08
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 92 LFGTKCEKCN--LNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKD 149
+ C C+ ++ + ++ +H +CF C C LV G F + +FC+
Sbjct: 3 SGSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLV-GKGFLTQNKEIFCQK 61
Query: 150 DHEGMDKSSNG 160
GMD +G
Sbjct: 62 CGSGMDTDISG 72
Score = 35.6 bits (82), Expect = 0.001
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 7 CVGCGGQIHDQYILRV--APDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
CV C I + D +WH+ C C +C L ++ + +C++
Sbjct: 8 CVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSL-VGKGFLTQNKEIFCQKCG 63
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 47.5 bits (113), Expect = 5e-08
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Query: 92 LFGTKCEKCN--LNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKD 149
+ C C ++ + + + +H CF C C LV G F D + C D
Sbjct: 3 SGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLV-GRGFLTERDDILCPD 61
Query: 150 DHEGMDKSSNG 160
+ + S+G
Sbjct: 62 CGKDISGPSSG 72
Score = 32.5 bits (74), Expect = 0.013
Identities = 12/93 (12%), Positives = 17/93 (18%), Gaps = 31/93 (33%)
Query: 7 CVGCGGQIHDQYILRV--APDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
C GC I + + +WH C C +C L
Sbjct: 8 CAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSL---------------------- 45
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKC 97
C + G
Sbjct: 46 -------VGRGFLTERDDILCPDCGKDISGPSS 71
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Length = 66
Score = 46.1 bits (110), Expect = 1e-07
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 92 LFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDH 151
+ C C + V+ A K +HV+ F C C K G R+ +C+ +
Sbjct: 3 MGVPICGACRRPIEGR--VVNAMGKQWHVEHFVCAKCEKPF-LGHRHYERKGLAYCETHY 59
Query: 152 E 152
Sbjct: 60 N 60
Score = 43.0 bits (102), Expect = 1e-06
Identities = 17/93 (18%), Positives = 27/93 (29%), Gaps = 31/93 (33%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
+ +C C I + + A +WH CA+C +
Sbjct: 4 GVPICGACRRPIEGRVV--NAMGKQWHVEHFVCAKCEKPF-------------------- 41
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGT 95
+ R G YC+ Y +LFG
Sbjct: 42 ---------LGHRHYERKGLAYCETHYNQLFGD 65
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding
protein, zinc finger; NMR {Coturnix japonica} SCOP:
g.39.1.3 g.39.1.3 PDB: 2o10_A
Length = 81
Score = 45.9 bits (109), Expect = 2e-07
Identities = 17/100 (17%), Positives = 27/100 (27%), Gaps = 30/100 (30%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSS 64
+ C CG ++ + +H C C C + LD
Sbjct: 8 NKCGACGRTVYHAEEV-QCDGRSFHRCCFLCMVCRKNLDST------------------- 47
Query: 65 EKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKCNLNF 104
T + D + YCK Y + +G K
Sbjct: 48 ----------TVAIHDAEVYCKSCYGKKYGPKGYGYGQGA 77
Score = 40.5 bits (95), Expect = 2e-05
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 94 GTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDH 151
G KC C + V + +H CF C+VC K L A+ + ++CK +
Sbjct: 7 GNKCGACGRTVYHAEEVQ-CDGRSFHRCCFLCMVCRKNLDST-TVAIHDAEVYCKSCY 62
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3,
LIM-domain protein DRAL, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 70
Score = 45.4 bits (108), Expect = 3e-07
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 93 FGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHE 152
+ C +C + + + +H +CF C C KQL G F R+D +C +
Sbjct: 4 GSSGCVQCKKPITTG--GVTYREQPWHKECFVCTACRKQLS-GQRFTARDDFAYCLNCFC 60
Score = 41.2 bits (97), Expect = 8e-06
Identities = 16/97 (16%), Positives = 22/97 (22%), Gaps = 31/97 (31%)
Query: 1 KRRLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
S CV C I + + WH C C C + L
Sbjct: 2 SSGSSGCVQCKKPITTGGV--TYREQPWHKECFVCTACRKQLSGQ--------------- 44
Query: 61 YVSSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKC 97
RD YC + L+ +
Sbjct: 45 --------------RFTARDDFAYCLNCFCDLYASGP 67
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein
1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 69
Score = 44.7 bits (106), Expect = 3e-07
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 93 FGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHE 152
+ C KCN + +++ +H CF CV C K+L G F ED +C D ++
Sbjct: 4 GSSGCVKCNKAITSG--GITYQDQPWHADCFVCVTCSKKLA-GQRFTAVEDQYYCVDCYK 60
Score = 38.5 bits (90), Expect = 7e-05
Identities = 17/91 (18%), Positives = 22/91 (24%), Gaps = 31/91 (34%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
CV C I I D WHA C C C + L G+ +
Sbjct: 8 CVKCNKAITSGGI--TYQDQPWHADCFVCVTCSKKLA---------GQRF---------- 46
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKC 97
+ + YC Y
Sbjct: 47 ----------TAVEDQYYCVDCYKNFVSGPS 67
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 70
Score = 42.8 bits (101), Expect = 2e-06
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 96 KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHE 152
C +C V++A N +H +CF C +C + L F C+ H
Sbjct: 7 GCHQCGEFIIGR--VIKAMNNSWHPECFRCDLCQEVL-ADIGFVKNAGRHLCRPCHN 60
Score = 38.2 bits (89), Expect = 9e-05
Identities = 17/95 (17%), Positives = 25/95 (26%), Gaps = 31/95 (32%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYV 62
S C CG I + I A + WH C RC C + L +
Sbjct: 4 GSSGCHQCGEFIIGRVI--KAMNNSWHPECFRCDLCQEVLADIG---------------- 45
Query: 63 SSEKNQFLDENCTCFVRDGKTYCKRDYVRLFGTKC 97
G+ C+ + R +
Sbjct: 46 -------------FVKNAGRHLCRPCHNREKASGP 67
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM
domain protein; NMR {Rattus rattus} SCOP: g.39.1.3
g.39.1.3
Length = 76
Score = 42.0 bits (99), Expect = 5e-06
Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 96 KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDH 151
KC KC+ + V + K +H C C CGK L G A E +C
Sbjct: 2 KCPKCDKEVYFAERVT-SLGKDWHRPCLKCEKCGKTLTSG-GHAEHEGKPYCNHPC 55
Score = 39.3 bits (92), Expect = 5e-05
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
C C +++ + + +WH CL+C +C + L +GK YC
Sbjct: 3 CPKCDKEVYFAERV-TSLGKDWHRPCLKCEKCGKTLTSG-GHAEHEGKPYCNHPC 55
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 76
Score = 41.6 bits (98), Expect = 6e-06
Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 96 KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDH 151
KC KC+ + V + K +H C C C K L PG A + FC
Sbjct: 11 KCPKCDKTVYFAEKVS-SLGKDWHKFCLKCERCSKTLTPG-GHAEHDGKPFCHKPC 64
Score = 38.5 bits (90), Expect = 9e-05
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
C C ++ + + +WH CL+C C + L DGK +C +
Sbjct: 12 CPKCDKTVYFAEKV-SSLGKDWHKFCLKCERCSKTLTPG-GHAEHDGKPFCHKPC 64
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains;
zinc finger protein, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 41.9 bits (98), Expect = 6e-06
Identities = 14/56 (25%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 94 GTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDG-LFCK 148
G C C + + + +H CF C C L PG DG +C
Sbjct: 15 GDLCALCGEHLYVLERLC-VNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCL 69
Score = 37.6 bits (87), Expect = 2e-04
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Query: 5 SLCVGCGGQIHD-QYILRVAPDLEWHAACLRCAECHQFLD-ENCTCFVRDGKTYCKRDY 61
LC CG ++ + + +H +C RC C L DG YC +
Sbjct: 16 DLCALCGEHLYVLERL--CVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHL 72
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 73
Score = 41.6 bits (97), Expect = 7e-06
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 93 FGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKD 149
+ C+ C V+ A K YH C CV CG+ G+E L+ ++
Sbjct: 4 GSSGCDSCEKYI--TGRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPA 58
Score = 32.4 bits (73), Expect = 0.013
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 5 SLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKR 59
S C C I + + A + +H +C C C Q E +++ +
Sbjct: 6 SGCDSCEKYITGRVL--EAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPA 58
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 91
Score = 41.4 bits (97), Expect = 1e-05
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 96 KCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHE 152
C +C + ++ A +++H+ CF C C +L G +A ++CK
Sbjct: 17 TCVECQKTVYPMERLL-ANQQVFHISCFRCSYCNNKLSLG-TYASLHGRIYCKPHFN 71
Score = 40.6 bits (95), Expect = 2e-05
Identities = 19/94 (20%), Positives = 30/94 (31%), Gaps = 30/94 (31%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
CV C ++ L +A +H +C RC+ C+ L
Sbjct: 18 CVECQKTVYPMERL-LANQQVFHISCFRCSYCNNKLS----------------------- 53
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKC 100
T G+ YCK + +LF +K
Sbjct: 54 ------LGTYASLHGRIYCKPHFNQLFKSKGNYD 81
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His
protein, LIM and senescent cell antigen-like domains 1,
structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 79
Score = 40.5 bits (95), Expect = 1e-05
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDY 61
+C C I +Q + + + +H CA C + L G+ YC +
Sbjct: 14 GKYICQKCHAIIDEQPL--IFKNDPYHPDHFNCANCGKELTA--DARELKGELYCLPCH 68
Score = 36.7 bits (85), Expect = 5e-04
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 97 CEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEGM 154
C+KC+ ++ + KN YH F C CGK+L + + L+C H+ M
Sbjct: 18 CQKCHAII--DEQPLIFKNDPYHPDHFNCANCGKEL--TADARELKGELYCLPCHDKM 71
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM
domain EVH1 DO cell motility, phosphorylation,
cytoskeleton; 2.35A {Homo sapiens}
Length = 65
Score = 36.8 bits (85), Expect = 3e-04
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 93 FGTKCEKCNLNFKREDFVMRAKNKIYHV--QCFCCVVCGKQLVPGDEFALREDGLFCKDD 150
C+ C+ E + N +H +CF C C K L+ G +F E +FC +
Sbjct: 1 HAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLI-GQKFMPVEGMVFCSVE 59
Query: 151 H 151
Sbjct: 60 C 60
Score = 28.7 bits (64), Expect = 0.22
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHA--ACLRCAECHQFLDENCTCFVRDGKTYCKRD 60
C GC I + + WHA C C+ C + L +G +C +
Sbjct: 5 CQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCL-IGQKFMPVEGMVFCSVE 59
>3kfu_F Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; ASPRS, gatcab,
ATP-binding, aminoacyl-tRNA synthetase, ligas
nucleotide-binding, protein biosynthesis, ligase-RNA
comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Length = 466
Score = 28.7 bits (65), Expect = 1.4
Identities = 12/22 (54%), Positives = 12/22 (54%), Gaps = 4/22 (18%)
Query: 93 FGTKCEKCNLN-FKREDFVMRA 113
GTK E NLN FK V RA
Sbjct: 200 LGTKVEIKNLNSFK---SVQRA 218
>3h0l_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; multi
protein complex, ligase, protein biosynthesis; HET: ADP;
2.30A {Aquifex aeolicus} PDB: 3h0m_B 3h0r_B*
Length = 478
Score = 27.8 bits (63), Expect = 2.7
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 4/22 (18%)
Query: 93 FGTKCEKCNLN-FKREDFVMRA 113
FGT+ E N+N F+ FV +A
Sbjct: 208 FGTRVEIKNVNSFR---FVQKA 226
>3ip4_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein
complex, ligase, ATP-binding, nucleotide-bindi protein
biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB:
2df4_B 2dqn_B* 2g5h_B 2g5i_B* 2f2a_B
Length = 483
Score = 27.4 bits (62), Expect = 2.7
Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 4/22 (18%)
Query: 93 FGTKCEKCNLN-FKREDFVMRA 113
FGTK E NLN F +V +
Sbjct: 205 FGTKAELKNLNSFN---YVRKG 223
>3u5w_A Putative uncharacterized protein; ssgcid, seattle structural
genomics center for infectious DI FMN-binding protein;
2.05A {Brucella melitensis biovar abortus} PDB: 3u0i_A
Length = 148
Score = 26.7 bits (59), Expect = 3.0
Identities = 2/25 (8%), Positives = 7/25 (28%), Gaps = 3/25 (12%)
Query: 36 AECHQFLDENCTC---FVRDGKTYC 57
+ + + +V D +
Sbjct: 13 YDIREMIQHKHVGRLGYVVDDRPII 37
>3al0_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; protein-RNA
complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga
maritima}
Length = 482
Score = 27.4 bits (62), Expect = 3.3
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 4/22 (18%)
Query: 93 FGTKCEKCNLN-FKREDFVMRA 113
+ E N+N F+ FV RA
Sbjct: 212 QSNRVEVKNMNSFR---FVERA 230
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding,
recombination,replication; 2.00A {Deinococcus
radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Length = 244
Score = 26.7 bits (59), Expect = 4.0
Identities = 6/32 (18%), Positives = 7/32 (21%), Gaps = 2/32 (6%)
Query: 118 YHVQCFCCVVCGKQLVPGDEFALREDGLFCKD 149
Q C CG + L C
Sbjct: 146 VIPQTARCARCGAPD--PEHPDPLGGQLLCSK 175
>2hq9_A MLL6688 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-2,
flavoprotein; HET: FAD; 1.95A {Mesorhizobium loti}
SCOP: b.45.1.1
Length = 149
Score = 26.4 bits (58), Expect = 4.5
Identities = 7/25 (28%), Positives = 10/25 (40%), Gaps = 3/25 (12%)
Query: 36 AECHQFLDENCTC---FVRDGKTYC 57
EC + L N +DG+ Y
Sbjct: 10 LECTKVLTANRVGRLACAKDGQPYV 34
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue;
Zn-binding domain, rossmann fold domain; HET: MYK NAD;
2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Length = 290
Score = 26.1 bits (58), Expect = 7.2
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 92 LFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCCVVCGKQLVPG 135
+F C CN K +++ + H C CG P
Sbjct: 152 VFEAVCCTCNKIVKLNKIMLQKTSHFMHQLPPEC-PCGGIFKPN 194
>3q8d_A DNA repair protein RECO; OB-fold, recombination initation, recom
initiation, SSB, RECR; HET: DNA CPS; 2.30A {Escherichia
coli}
Length = 242
Score = 26.0 bits (57), Expect = 7.9
Identities = 7/36 (19%), Positives = 11/36 (30%)
Query: 118 YHVQCFCCVVCGKQLVPGDEFALREDGLFCKDDHEG 153
Y V C G+ + + RE+ F
Sbjct: 144 YGVNFTHCAGSGEPVDDTMTYRYREEKGFIASVVID 179
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.140 0.463
Gapped
Lambda K H
0.267 0.0540 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,956,714
Number of extensions: 169294
Number of successful extensions: 920
Number of sequences better than 10.0: 1
Number of HSP's gapped: 736
Number of HSP's successfully gapped: 137
Length of query: 191
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 103
Effective length of database: 4,244,745
Effective search space: 437208735
Effective search space used: 437208735
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 54 (25.0 bits)