RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4072
(191 letters)
>d1rutx3 g.39.1.3 (X:83-113) LIM only 4 (Lmo4) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 31
Score = 38.5 bits (90), Expect = 1e-05
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 97 CEKCNLNFKREDFVMRAKNKIYHVQCF 123
C C + + VMRA+ +YH++CF
Sbjct: 5 CSACGQSIPASELVMRAQGNVYHLKCF 31
>d1b8ta4 g.39.1.3 (A:144-192) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 49
Score = 38.9 bits (91), Expect = 1e-05
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 67 NQFLDENCTCFVRDGKTYCKRDYVRLFGTKCEKC 100
+ L+ T +DG+ YCK Y + FG K
Sbjct: 6 GKSLES-TTLADKDGEIYCKGCYAKNFGPKGFGF 38
Score = 38.2 bits (89), Expect = 2e-05
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 34 RCAECHQFLDENCTCFVRDGKTYCKRDYV 62
RCA+C + L+ T +DG+ YCK Y
Sbjct: 1 RCAKCGKSLES-TTLADKDGEIYCKGCYA 28
>d1x3ha1 g.39.1.3 (A:8-42) Leupaxin {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 36.2 bits (84), Expect = 1e-04
Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 87 RDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
+D++ +F KC CN + + A + ++H +CF
Sbjct: 1 KDFLAMFSPKCGGCNR--PVLENYLSAMDTVWHPECF 35
>d1rutx1 g.39.1.3 (X:19-48) LIM only 4 (Lmo4) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 30
Score = 34.3 bits (79), Expect = 4e-04
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACL 33
C GCGG+I D+++L D WH+ CL
Sbjct: 5 CAGCGGKIADRFLLYAM-DSYWHSRCL 30
>d1j2oa1 g.39.1.3 (A:1-30) Rhombotin-2 (Lmo2) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 30
Score = 32.1 bits (73), Expect = 0.003
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAAC 32
C GC I D+Y L+ D WH C
Sbjct: 6 CGGCQQNIGDRYFLKAI-DQYWHEDC 30
>d1v6ga1 g.39.1.3 (A:1-41) Actin-binding LIM protein 2, abLIM2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 41
Score = 31.7 bits (72), Expect = 0.005
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 88 DYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQC 122
DY RL+GT+C C+ + E V+ A K YH C
Sbjct: 9 DYQRLYGTRCFSCDQFIEGE--VVSALGKTYHPDC 41
>d1rutx4 g.39.1.3 (X:114-146) LIM only 4 (Lmo4) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 33
Score = 29.9 bits (67), Expect = 0.019
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 125 CVVCGKQLVPGDEFALREDGLFCKDDHEG 153
C C +LVPGD F LFC+ D
Sbjct: 2 CSTCRNRLVPGDRFHYINGSLFCEHDRPT 30
>d1rutx2 g.39.1.3 (X:49-82) LIM only 4 (Lmo4) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 34
Score = 27.4 bits (61), Expect = 0.14
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 75 TCFVRDGKTYCKRDYVRLFG 94
+ + + G C+ DY+RLFG
Sbjct: 15 SSYTKSGMILCRNDYIRLFG 34
>d1x63a1 g.39.1.3 (A:8-44) Four and a half LIM domains protein 1,
FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 37
Score = 27.4 bits (61), Expect = 0.15
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 89 YVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCF 123
R KC+ C D + K ++H CF
Sbjct: 3 TTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCF 37
>d1g47a2 g.39.1.3 (A:36-70) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 26.2 bits (58), Expect = 0.35
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 35 CAECHQFLDENCTCFVRDGKTYCKRDY 61
CA+C Q + +G+ YC+ D+
Sbjct: 3 CAQCFQQF-PEGLFYEFEGRKYCEHDF 28
Score = 24.3 bits (53), Expect = 1.7
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 77 FVRDGKTYCKRDYVRLF 93
+ +G+ YC+ D+ LF
Sbjct: 16 YEFEGRKYCEHDFQMLF 32
>d1b8ta2 g.39.1.3 (A:36-100) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 65
Score = 25.2 bits (55), Expect = 1.4
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 35 CAECHQFLDENCTCFVRDGKTYCKRDY 61
C C + LD + T V + YCK Y
Sbjct: 2 CMVCKKNLD-STTVAVHGDEIYCKSCY 27
Score = 24.8 bits (54), Expect = 2.2
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 75 TCFVRDGKTYCKRDYVRLFGTK 96
T V + YCK Y + +G K
Sbjct: 13 TVAVHGDEIYCKSCYGKKYGPK 34
>d2dj7a1 g.39.1.3 (A:44-74) Actin-binding LIM protein 3, abLIM-3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 31
Score = 24.0 bits (52), Expect = 1.9
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 79 RDGKTYCKRDYVRLFG 94
+DG YC+ DY FG
Sbjct: 16 KDGVPYCESDYHAQFG 31
>d1pgl22 b.121.4.2 (2:183-370) Comovirus coat proteins (VP37 and
VP23) {BPMV (Bean pod mottle virus) [TaxId: 12260]}
Length = 188
Score = 26.0 bits (57), Expect = 2.9
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 93 FGTKCEKCNLNFKREDFVMR 112
FG EK L F +E+F+
Sbjct: 106 FGEIQEKVVLKFSQEEFLTA 125
>d1x3ha2 g.39.1.3 (A:43-74) Leupaxin {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 23.2 bits (50), Expect = 3.6
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 35 CAECHQFLDENCTCFVRDGKTYCKRDY 61
C +C + F DG+ +C+ Y
Sbjct: 2 CGDCFTSF-STGSFFELDGRPFCELHY 27
Score = 22.0 bits (47), Expect = 9.4
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 72 ENCTCFVRDGKTYCKRDYVRLFG 94
+ F DG+ +C+ Y G
Sbjct: 10 STGSFFELDGRPFCELHYHHRRG 32
>d2dloa1 g.39.1.3 (A:8-42) Thyroid receptor interacting protein 6,
TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 23.2 bits (50), Expect = 4.1
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 96 KCEKCNLNFKREDFVMRAKNKIYHVQCF 123
KC C+ D ++RA K YH CF
Sbjct: 10 KCATCSQPIL--DRILRAMGKAYHPGCF 35
>d1ny722 b.121.4.2 (2:183-369) Comovirus coat proteins (VP37 and
VP23) {CPMV (Cowpea mosaic virus) [TaxId: 12264]}
Length = 187
Score = 25.2 bits (55), Expect = 4.5
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 93 FGTKCEKCNLNFKREDFVMR 112
F EKC L F +++FV
Sbjct: 106 FAEVEEKCTLVFSQQEFVTA 125
>d2dara2 g.39.1.3 (A:8-52) PDZ and LIM domain protein 5, Enigma
{Human (Homo sapiens) [TaxId: 9606]}
Length = 45
Score = 23.2 bits (50), Expect = 5.0
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 3 RLSLCVGCGGQIHDQYILRVAPDLEWHAAC 32
R +C C I ++ VA WH
Sbjct: 17 RTPMCAHCNQVIRGPFL--VALGKSWHPEE 44
>d2f0ca2 b.108.1.4 (A:17-62) Baseplate protein (bpp), N-terminal
domain {Lactococcus phage tp901-1 [TaxId: 35345]}
Length = 46
Score = 23.4 bits (50), Expect = 5.4
Identities = 6/18 (33%), Positives = 13/18 (72%)
Query: 169 INNNLHNLNNEGSNSGKI 186
IN++L +N+E ++ G +
Sbjct: 2 INDDLEAINSELTSGGNV 19
>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus
thermophilus [TaxId: 274]}
Length = 1504
Score = 25.5 bits (55), Expect = 5.7
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 5/26 (19%)
Query: 78 VRDGKTYC---KRDYVRLFGTKCEKC 100
++D + C KR R G CE+C
Sbjct: 52 IKDYECACGKYKR--QRFEGKVCERC 75
>d1fgja_ a.138.1.3 (A:) Hydroxylamine oxidoreductase, HAO
{Nitrosomonas europaea [TaxId: 915]}
Length = 499
Score = 25.0 bits (53), Expect = 6.9
Identities = 19/180 (10%), Positives = 40/180 (22%), Gaps = 2/180 (1%)
Query: 7 CVGCGGQIHDQYILRVAPDLEWHAACLRCAECHQFLDENCTCFVRDGKTYCKRDYVSSEK 66
CV C ++ + +R + L + + + + EK
Sbjct: 79 CVECHSDETPVWVRAWKRSTHANLDKIRNLKSDDPLYYK-KGKLEEVENNLRSMGKLGEK 137
Query: 67 NQFLDENC-TCFVRDGKTYCKRDYVRLFGTKCEKCNLNFKREDFVMRAKNKIYHVQCFCC 125
+ C C V K + + C RE ++
Sbjct: 138 ETLKEVGCIDCHVDVNKKDKADHTKDIRMPTADTCGTCHLREFAERESERDTMVWPNGQW 197
Query: 126 VVCGKQLVPGDEFALREDGLFCKDDHEGMDKSSNGENNNNNTNINNNLHNLNNEGSNSGK 185
+ E + + N N + + H + S +
Sbjct: 198 PAGRPSHALDYTANIETTVWATMPQREVAEGCTMCHTNQNKCDNCHTRHEFSAAESRKPE 257
>d1r5ya_ c.1.20.1 (A:) Queosine tRNA-guanine transglycosylase
{Zymomonas mobilis [TaxId: 542]}
Length = 372
Score = 24.8 bits (53), Expect = 8.9
Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 11/56 (19%)
Query: 45 NCTCFVRDGKTYCKRDYVSSEKNQFLDENCTCFVRDGKTYCK---RDYVR-LFGTK 96
N F DG R+ SE + LD C C V C+ R Y+ L
Sbjct: 280 NGQAFTWDGP-INIRNARFSEDLKPLDSECHCAV------CQKWSRAYIHHLIRAG 328
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.140 0.463
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 771,513
Number of extensions: 38299
Number of successful extensions: 270
Number of sequences better than 10.0: 1
Number of HSP's gapped: 260
Number of HSP's successfully gapped: 76
Length of query: 191
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 111
Effective length of database: 1,309,196
Effective search space: 145320756
Effective search space used: 145320756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 50 (23.3 bits)