Query psy4075
Match_columns 67
No_of_seqs 82 out of 84
Neff 2.8
Searched_HMMs 29240
Date Sat Aug 17 00:42:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4075.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4075hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g36_A Protein DPY-30 homolog; 99.4 2.2E-13 7.7E-18 80.7 3.0 32 36-67 1-32 (55)
2 1yyp_B DNA polymerase, POL; pr 21.6 16 0.00054 18.7 -0.3 14 42-55 1-14 (26)
3 2g31_A Reticulon-4; NOGO, heli 18.5 45 0.0015 19.0 1.1 11 42-52 17-27 (60)
4 2l9b_B MRNA 3'-END-processing 16.7 17 0.00057 21.4 -1.1 13 40-52 16-28 (53)
5 3htu_A Vacuolar protein-sortin 16.0 88 0.003 18.9 2.1 20 38-66 43-62 (79)
6 2d7c_C RAB11 family-interactin 14.1 1E+02 0.0036 16.8 1.9 13 44-56 20-32 (42)
7 2hv8_D RAB11 family-interactin 13.0 1.1E+02 0.0038 18.0 1.9 14 43-56 41-54 (64)
8 2ko2_A Reticulon-4; NOGO, memb 12.1 73 0.0025 19.4 0.9 10 43-52 31-40 (79)
9 1xkm_B Distinctin chain B; por 10.8 90 0.0031 15.8 0.8 9 43-51 8-16 (26)
10 3a16_A Oxdre, aldoxime dehydra 8.8 2E+02 0.0067 21.9 2.4 22 45-66 251-272 (373)
No 1
>3g36_A Protein DPY-30 homolog; X-type four-helix bundle, nucleus, nuclear protein; 1.20A {Homo sapiens}
Probab=99.37 E-value=2.2e-13 Score=80.72 Aligned_cols=32 Identities=66% Similarity=1.046 Sum_probs=30.2
Q ss_pred CCCCCCchhHHHHhhhHHHHHHHHHHHHhhcC
Q psy4075 36 RLDLHALPTRQYLDQTVVPILLAALTQLTKER 67 (67)
Q Consensus 36 ~~~l~sLP~RqYLdqTVVPiLLqGL~~LaKER 67 (67)
+++++|||+|+||+++|+|+|++||.+|||+|
T Consensus 1 ~~~~~slp~R~YL~~~V~p~L~~GL~~lak~r 32 (55)
T 3g36_A 1 KVDLQSLPTRAYLDQTVVPILLQGMAVLAKER 32 (55)
T ss_dssp -CCGGGSCHHHHHHTTTHHHHHHHHHHHHHHC
T ss_pred CcccccCcHHHHHHHHhHHHHHHHHHHHHHhC
Confidence 47899999999999999999999999999998
No 2
>1yyp_B DNA polymerase, POL; processivity fold (SAME fold AS HSV UL42, PCNA, and homotrim sliding clamps), replication-transferase complex; HET: DNA; 2.50A {Human herpesvirus 5}
Probab=21.56 E-value=16 Score=18.69 Aligned_cols=14 Identities=36% Similarity=0.672 Sum_probs=12.3
Q ss_pred chhHHHHhhhHHHH
Q psy4075 42 LPTRQYLDQTVVPI 55 (67)
Q Consensus 42 LP~RqYLdqTVVPi 55 (67)
||.|-||....+|-
T Consensus 1 lP~RiYl~~~Fl~~ 14 (26)
T 1yyp_B 1 LPRRLHLEPAFLPY 14 (26)
T ss_pred CCceEecCHHHHHH
Confidence 68999999988886
No 3
>2g31_A Reticulon-4; NOGO, helix, signaling protein; NMR {Homo sapiens} PDB: 2jv5_A
Probab=18.46 E-value=45 Score=19.03 Aligned_cols=11 Identities=45% Similarity=0.788 Sum_probs=8.4
Q ss_pred chhHHHHhhhH
Q psy4075 42 LPTRQYLDQTV 52 (67)
Q Consensus 42 LP~RqYLdqTV 52 (67)
=|.+.|||..+
T Consensus 17 hPFk~yLd~di 27 (60)
T 2g31_A 17 HPFRAYLESEV 27 (60)
T ss_dssp CTTHHHHHHHH
T ss_pred CCchhccccCc
Confidence 37899998754
No 4
>2l9b_B MRNA 3'-END-processing protein RNA14; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=16.71 E-value=17 Score=21.39 Aligned_cols=13 Identities=31% Similarity=0.823 Sum_probs=9.3
Q ss_pred CCchhHHHHhhhH
Q psy4075 40 HALPTRQYLDQTV 52 (67)
Q Consensus 40 ~sLP~RqYLdqTV 52 (67)
.=||.|||+-.++
T Consensus 16 ~vLPKRQYFK~~~ 28 (53)
T 2l9b_B 16 SVIPKRQYFNTNL 28 (53)
T ss_dssp HHSBCGGGGCSSC
T ss_pred HHcchHhhhcccc
Confidence 3489999986543
No 5
>3htu_A Vacuolar protein-sorting-associated protein 25; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=15.98 E-value=88 Score=18.88 Aligned_cols=20 Identities=40% Similarity=0.614 Sum_probs=15.5
Q ss_pred CCCCchhHHHHhhhHHHHHHHHHHHHhhc
Q psy4075 38 DLHALPTRQYLDQTVVPILLAALTQLTKE 66 (67)
Q Consensus 38 ~l~sLP~RqYLdqTVVPiLLqGL~~LaKE 66 (67)
++..||. ++|+.+|+.|+|.
T Consensus 43 ef~gmd~---------~~L~kaL~~L~k~ 62 (79)
T 3htu_A 43 EFHGLDE---------ATLLRALQALQQE 62 (79)
T ss_dssp TTTTCCH---------HHHHHHHHHHHHT
T ss_pred cccCCCH---------HHHHHHHHHHHHc
Confidence 5666663 7899999999885
No 6
>2d7c_C RAB11 family-interacting protein 3; GTP-ASE, coiled-coil, protein transport; HET: GTP MES; 1.75A {Homo sapiens} SCOP: h.1.31.1
Probab=14.09 E-value=1e+02 Score=16.78 Aligned_cols=13 Identities=31% Similarity=0.792 Sum_probs=10.0
Q ss_pred hHHHHhhhHHHHH
Q psy4075 44 TRQYLDQTVVPIL 56 (67)
Q Consensus 44 ~RqYLdqTVVPiL 56 (67)
.|+|+|.-++-|+
T Consensus 20 Le~YID~LL~~Vm 32 (42)
T 2d7c_C 20 LQDYIDRIIVAIM 32 (42)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5899999777654
No 7
>2hv8_D RAB11 family-interacting protein 3; protein transport, RAB11A, FIP3, cytokinesis, recycling endosomes; HET: GTP MES; 1.86A {Homo sapiens} SCOP: h.1.31.1
Probab=13.01 E-value=1.1e+02 Score=18.03 Aligned_cols=14 Identities=29% Similarity=0.714 Sum_probs=10.8
Q ss_pred hhHHHHhhhHHHHH
Q psy4075 43 PTRQYLDQTVVPIL 56 (67)
Q Consensus 43 P~RqYLdqTVVPiL 56 (67)
-.|+|+|.-++-|+
T Consensus 41 ~Le~YID~LL~~Im 54 (64)
T 2hv8_D 41 RLQDYIDRIIVAIM 54 (64)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46999999877664
No 8
>2ko2_A Reticulon-4; NOGO, membrane protein, peripheral, DPC micelle, myelin INHI endoplasmic reticulum, membrane, phosphoprotein, transmembr; NMR {Mus musculus}
Probab=12.06 E-value=73 Score=19.39 Aligned_cols=10 Identities=50% Similarity=0.929 Sum_probs=8.0
Q ss_pred hhHHHHhhhH
Q psy4075 43 PTRQYLDQTV 52 (67)
Q Consensus 43 P~RqYLdqTV 52 (67)
|.|.|||..+
T Consensus 31 PFk~YLd~Di 40 (79)
T 2ko2_A 31 PFRAYLESEV 40 (79)
T ss_dssp CSHHHHHHHH
T ss_pred Cccccccccc
Confidence 6899999754
No 9
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=10.77 E-value=90 Score=15.81 Aligned_cols=9 Identities=44% Similarity=0.822 Sum_probs=6.6
Q ss_pred hhHHHHhhh
Q psy4075 43 PTRQYLDQT 51 (67)
Q Consensus 43 P~RqYLdqT 51 (67)
-.|.||+|-
T Consensus 8 earkyleql 16 (26)
T 1xkm_B 8 EARKYLEQL 16 (26)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 358899873
No 10
>3a16_A Oxdre, aldoxime dehydratase; beta barrel, heme protein, lyase; HET: HEM; 1.60A {Rhodococcus erythropolis} PDB: 3a15_A* 3a17_A* 3a18_A*
Probab=8.83 E-value=2e+02 Score=21.94 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=18.0
Q ss_pred HHHHhhhHHHHHHHHHHHHhhc
Q psy4075 45 RQYLDQTVVPILLAALTQLTKE 66 (67)
Q Consensus 45 RqYLdqTVVPiLLqGL~~LaKE 66 (67)
|+|-..++-|+|.+||..|..+
T Consensus 251 r~~Y~e~~eP~L~~Gm~fLrd~ 272 (373)
T 3a16_A 251 RSLYLDEILPTLQSGMDFLRDN 272 (373)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHS
T ss_pred HHHHHHhccHHHHHHHHHHHhC
Confidence 5666678999999999998654
Done!