Query psy4075
Match_columns 67
No_of_seqs 82 out of 84
Neff 2.8
Searched_HMMs 13730
Date Sat Aug 17 00:42:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4075.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4075hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1lrza2 d.108.1.4 (A:1-165) Me 35.5 6.5 0.00047 24.1 1.2 26 42-67 75-100 (165)
2 d1mlia_ d.58.4.1 (A:) Muconala 18.4 3.9 0.00028 24.5 -2.3 17 39-55 68-84 (96)
3 d1nhpa3 d.87.1.1 (A:322-447) N 12.8 57 0.0042 18.2 2.1 14 54-67 113-126 (126)
4 d1xb4a2 a.4.5.54 (A:126-199) V 10.5 76 0.0056 17.5 2.1 20 38-66 39-58 (74)
5 d1u02a_ c.108.1.15 (A:) Trehal 7.7 65 0.0047 17.6 0.9 15 53-67 214-228 (229)
6 d1susa1 c.66.1.1 (A:21-247) Ca 7.7 1.1E+02 0.0079 19.0 2.2 25 40-64 5-33 (227)
7 d2ayja1 g.41.8.7 (A:1-56) Ribo 7.1 72 0.0052 17.3 0.9 7 1-7 1-7 (56)
8 d1y8oa1 a.29.5.1 (A:13-176) Py 7.1 1.4E+02 0.01 18.2 2.4 16 50-65 108-123 (164)
9 d1usub_ d.83.2.1 (B:) Activato 6.6 2.1E+02 0.015 16.5 3.0 24 43-66 111-134 (142)
10 d3bofa1 c.1.21.2 (A:301-560) C 6.4 1.2E+02 0.009 19.6 2.0 19 40-58 211-229 (260)
No 1
>d1lrza2 d.108.1.4 (A:1-165) Methicillin resistance protein FemA {Staphylococcus aureus [TaxId: 1280]}
Probab=35.46 E-value=6.5 Score=24.07 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=22.7
Q ss_pred chhHHHHhhhHHHHHHHHHHHHhhcC
Q psy4075 42 LPTRQYLDQTVVPILLAALTQLTKER 67 (67)
Q Consensus 42 LP~RqYLdqTVVPiLLqGL~~LaKER 67 (67)
=|+-.|-|..++.-++++|..+||.+
T Consensus 75 GPv~d~~d~~ll~~~l~~L~~~akk~ 100 (165)
T d1lrza2 75 GPVIDYENQELVHFFFNELSKYVKKH 100 (165)
T ss_dssp CCEECTTCHHHHHHHHHHHHHHHHTT
T ss_pred CCccCccCHHHHHHHHHHHHHHHHHC
Confidence 47778889999999999999999864
No 2
>d1mlia_ d.58.4.1 (A:) Muconalactone isomerase, MLI {Pseudomonas putida [TaxId: 303]}
Probab=18.41 E-value=3.9 Score=24.46 Aligned_cols=17 Identities=35% Similarity=0.479 Sum_probs=14.9
Q ss_pred CCCchhHHHHhhhHHHH
Q psy4075 39 LHALPTRQYLDQTVVPI 55 (67)
Q Consensus 39 l~sLP~RqYLdqTVVPi 55 (67)
+.+||...|++-.|.|+
T Consensus 68 L~~LPL~p~m~ieVtpL 84 (96)
T d1mlia_ 68 LMQLPLFPYMDIEVDGL 84 (96)
T ss_pred HHcCCCcccccceEEEc
Confidence 67899999999988875
No 3
>d1nhpa3 d.87.1.1 (A:322-447) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}
Probab=12.76 E-value=57 Score=18.20 Aligned_cols=14 Identities=43% Similarity=0.413 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhhcC
Q psy4075 54 PILLAALTQLTKER 67 (67)
Q Consensus 54 PiLLqGL~~LaKER 67 (67)
|+.+-|+.++.|+|
T Consensus 113 ~l~~aA~~a~~~~R 126 (126)
T d1nhpa3 113 IINTAALEAVKQER 126 (126)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCcC
Confidence 67888999999998
No 4
>d1xb4a2 a.4.5.54 (A:126-199) Vacuolar protein sorting-associated protein VPS25 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.49 E-value=76 Score=17.50 Aligned_cols=20 Identities=25% Similarity=0.571 Sum_probs=15.7
Q ss_pred CCCCchhHHHHhhhHHHHHHHHHHHHhhc
Q psy4075 38 DLHALPTRQYLDQTVVPILLAALTQLTKE 66 (67)
Q Consensus 38 ~l~sLP~RqYLdqTVVPiLLqGL~~LaKE 66 (67)
+++.||. .+|+++|+.|.|.
T Consensus 39 efhgld~---------~~L~kaL~~Le~~ 58 (74)
T d1xb4a2 39 EFHRMPE---------SLLYYCLKPLCDR 58 (74)
T ss_dssp TTTTCCH---------HHHHHHHHHHHGG
T ss_pred cccCCCH---------HHHHHHHHHHHHc
Confidence 6677764 6899999999875
No 5
>d1u02a_ c.108.1.15 (A:) Trehalose-6-phosphate phosphatase related protein {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=7.71 E-value=65 Score=17.60 Aligned_cols=15 Identities=13% Similarity=0.224 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhhcC
Q psy4075 53 VPILLAALTQLTKER 67 (67)
Q Consensus 53 VPiLLqGL~~LaKER 67 (67)
|=-+|..|+.|+++|
T Consensus 214 v~~~l~~l~~~~~~~ 228 (229)
T d1u02a_ 214 MRKILKFIEMLGVQK 228 (229)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc
Confidence 444788899988875
No 6
>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}
Probab=7.68 E-value=1.1e+02 Score=19.01 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=15.5
Q ss_pred CCchhHHHHhhhHH----HHHHHHHHHHh
Q psy4075 40 HALPTRQYLDQTVV----PILLAALTQLT 64 (67)
Q Consensus 40 ~sLP~RqYLdqTVV----PiLLqGL~~La 64 (67)
++=+.++|+.++-+ |=+|+.|...+
T Consensus 5 ~~~~l~~Yi~~~s~~~~~~~~l~~l~~~~ 33 (227)
T d1susa1 5 QSDALYQYILETSVFPREHEAMKELREVT 33 (227)
T ss_dssp SCHHHHHHHHHHHTSSSCTTHHHHHHHHH
T ss_pred ccHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 34577899988754 34455555444
No 7
>d2ayja1 g.41.8.7 (A:1-56) Ribosomal protein L40e {Sulfolobus solfataricus [TaxId: 2287]}
Probab=7.07 E-value=72 Score=17.29 Aligned_cols=7 Identities=43% Similarity=0.904 Sum_probs=4.6
Q ss_pred CCCCCCC
Q psy4075 1 MPIEDNT 7 (67)
Q Consensus 1 ~~~~~~~ 7 (67)
|||.||+
T Consensus 1 mPi~eP~ 7 (56)
T d2ayja1 1 MPLTDPA 7 (56)
T ss_dssp CCSCCSC
T ss_pred CCccCHH
Confidence 6776665
No 8
>d1y8oa1 a.29.5.1 (A:13-176) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.06 E-value=1.4e+02 Score=18.17 Aligned_cols=16 Identities=19% Similarity=0.430 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHHhh
Q psy4075 50 QTVVPILLAALTQLTK 65 (67)
Q Consensus 50 qTVVPiLLqGL~~LaK 65 (67)
..|||.|-+|+.++.+
T Consensus 108 ~~vv~tlA~G~~E~k~ 123 (164)
T d1y8oa1 108 NDVVPTMAQGVIEYKE 123 (164)
T ss_dssp GGHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHH
Confidence 3699999999998865
No 9
>d1usub_ d.83.2.1 (B:) Activator of Hsp90 ATPase, Aha1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.64 E-value=2.1e+02 Score=16.49 Aligned_cols=24 Identities=17% Similarity=0.371 Sum_probs=20.3
Q ss_pred hhHHHHhhhHHHHHHHHHHHHhhc
Q psy4075 43 PTRQYLDQTVVPILLAALTQLTKE 66 (67)
Q Consensus 43 P~RqYLdqTVVPiLLqGL~~LaKE 66 (67)
+.++.+-+-.+|.|.+.|....++
T Consensus 111 ~~k~~i~k~~~~~lr~~l~~f~~~ 134 (142)
T d1usub_ 111 EAKPLIRSELLPKLRQIFQQFGKD 134 (142)
T ss_dssp THHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Confidence 368888999999999999887764
No 10
>d3bofa1 c.1.21.2 (A:301-560) Cobalamin-dependent methionine synthase MetH, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=6.38 E-value=1.2e+02 Score=19.62 Aligned_cols=19 Identities=21% Similarity=0.525 Sum_probs=15.3
Q ss_pred CCchhHHHHhhhHHHHHHH
Q psy4075 40 HALPTRQYLDQTVVPILLA 58 (67)
Q Consensus 40 ~sLP~RqYLdqTVVPiLLq 58 (67)
..||.|.||.++.+...++
T Consensus 211 FGlp~R~~ln~~Fl~~a~~ 229 (260)
T d3bofa1 211 FGLPDRSYYNTAFLVLGIS 229 (260)
T ss_dssp TTCTTHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHH
Confidence 4789999999998776554
Done!