RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy4075
         (67 letters)



>gnl|CDD|147395 pfam05186, Dpy-30, Dpy-30 motif.  This motif is found in a wide
          variety of domain contexts. It is found in the Dpy-30
          proteins hence the motifs name. It is about 40 residues
          long and is probably fomed of two alpha-helices. It may
          be a dimerisation motif analogous to pfam02197 (Bateman
          A pers obs).
          Length = 42

 Score = 38.3 bits (90), Expect = 6e-06
 Identities = 17/25 (68%), Positives = 19/25 (76%)

Query: 43 PTRQYLDQTVVPILLAALTQLTKER 67
          P RQYL+ TV PILL  LT+L KER
Sbjct: 1  PARQYLNDTVAPILLQGLTELAKER 25


>gnl|CDD|179147 PRK00870, PRK00870, haloalkane dehalogenase; Provisional.
          Length = 302

 Score = 29.6 bits (67), Expect = 0.066
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 28 DGPGLKKPRLDLHALPTRQYLDQTVVPILLAA 59
          +GP    P L LH  P+  YL + ++PIL AA
Sbjct: 41 EGPADGPPVLLLHGEPSWSYLYRKMIPILAAA 72


>gnl|CDD|177934 PLN02297, PLN02297, ribose-phosphate pyrophosphokinase.
          Length = 326

 Score = 26.6 bits (59), Expect = 0.97
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 7/33 (21%)

Query: 38  DLHALPTRQYLD-------QTVVPILLAALTQL 63
           D+HAL  R Y         ++ +P+L   L QL
Sbjct: 147 DIHALQERFYFGDNVLPCFESGIPLLKKRLQQL 179


>gnl|CDD|224216 COG1297, COG1297, Predicted membrane protein [Function unknown].
          Length = 624

 Score = 25.8 bits (57), Expect = 1.7
 Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 3/24 (12%)

Query: 10  TGTAEVLKVIKSSDSKEGDGPGLK 33
              AEVLK     + +EGD  G+K
Sbjct: 142 VAAAEVLKA---GNQREGDASGIK 162


>gnl|CDD|226672 COG4219, MecR1, Antirepressor regulating drug resistance, predicted
           signal transduction N-terminal membrane component
           [Transcription / Signal transduction mechanisms].
          Length = 337

 Score = 25.2 bits (55), Expect = 2.9
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 17  KVIKSSDSKEGDGP---GLKKPRLDLHALPTRQYLDQTVVPILLAALTQL 63
           K I    SK  DGP   GL KP + L A    +  D+ +  I+L  L+ L
Sbjct: 152 KHILIRKSKAIDGPMVFGLVKPCIVLPADFVERLTDEELKYIILHELSHL 201


>gnl|CDD|227217 COG4880, COG4880, Secreted protein containing C-terminal
           beta-propeller domain distantly related to WD-40 repeats
           [General function prediction only].
          Length = 603

 Score = 24.5 bits (53), Expect = 4.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 1   MPIEDNTNNTGTAEVLKVIKSSDSKEGDGPGLK 33
            P+ED  NN    E+L   +     EG+GP L+
Sbjct: 300 NPLEDLKNNAKVVEILTTAERVYISEGEGPRLR 332


>gnl|CDD|182508 PRK10512, PRK10512, selenocysteinyl-tRNA-specific translation
           factor; Provisional.
          Length = 614

 Score = 23.9 bits (52), Expect = 8.7
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 3/34 (8%)

Query: 27  GDGPGLKKPRLDLHALPTRQYLDQTVVPILLAAL 60
            D PG  + RL   ALP     D+ +V +L+  +
Sbjct: 435 RDEPGPGRERLRRMALPM---EDEALVLLLIEKM 465


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.310    0.131    0.358 

Gapped
Lambda     K      H
   0.267   0.0800    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,206,264
Number of extensions: 224046
Number of successful extensions: 128
Number of sequences better than 10.0: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 9
Length of query: 67
Length of database: 10,937,602
Length adjustment: 38
Effective length of query: 29
Effective length of database: 9,252,150
Effective search space: 268312350
Effective search space used: 268312350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 53 (24.1 bits)