RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy4075
         (67 letters)



>3g36_A Protein DPY-30 homolog; X-type four-helix bundle, nucleus,
          nuclear protein; 1.20A {Homo sapiens}
          Length = 55

 Score = 49.3 bits (118), Expect = 2e-10
 Identities = 21/32 (65%), Positives = 25/32 (78%)

Query: 36 RLDLHALPTRQYLDQTVVPILLAALTQLTKER 67
          ++DL +LPTR YLDQTVVPILL  +  L KER
Sbjct: 1  KVDLQSLPTRAYLDQTVVPILLQGMAVLAKER 32


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.9 bits (59), Expect = 0.50
 Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 8/34 (23%)

Query: 32  LKKPRLDLHALPTRQYLDQTVV--PILLAALTQL 63
           L+ P       P + YL    +  P++   + QL
Sbjct: 219 LENP----SNTPDKDYLLSIPISCPLI--GVIQL 246


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.310    0.131    0.358 

Gapped
Lambda     K      H
   0.267   0.0711    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 899,758
Number of extensions: 38045
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 2
Length of query: 67
Length of database: 6,701,793
Length adjustment: 38
Effective length of query: 29
Effective length of database: 5,640,795
Effective search space: 163583055
Effective search space used: 163583055
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (23.5 bits)