Query psy4078
Match_columns 269
No_of_seqs 349 out of 1515
Neff 7.2
Searched_HMMs 29240
Date Sat Aug 17 00:46:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4078.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4078hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cue_A Paired box protein PAX6 99.8 2.4E-20 8.2E-25 137.4 6.6 68 78-145 3-70 (80)
2 2dmu_A Homeobox protein goosec 99.8 3.1E-20 1.1E-24 133.4 4.4 64 78-141 3-66 (70)
3 2cra_A Homeobox protein HOX-B1 99.8 2.4E-20 8.1E-25 134.0 3.2 65 77-141 2-66 (70)
4 2dmq_A LIM/homeobox protein LH 99.8 6E-20 2.1E-24 135.2 5.4 65 78-142 3-67 (80)
5 2dms_A Homeobox protein OTX2; 99.8 3.7E-20 1.3E-24 136.4 4.0 65 77-141 2-66 (80)
6 1nk2_P Homeobox protein VND; h 99.8 8.3E-20 2.8E-24 133.6 5.7 66 77-142 4-69 (77)
7 2h1k_A IPF-1, pancreatic and d 99.8 3.4E-20 1.2E-24 130.5 3.4 61 81-141 2-62 (63)
8 2djn_A Homeobox protein DLX-5; 99.8 4.1E-20 1.4E-24 132.8 3.1 64 77-140 2-65 (70)
9 2da2_A Alpha-fetoprotein enhan 99.8 4.5E-20 1.5E-24 132.5 3.3 65 77-141 2-66 (70)
10 2e1o_A Homeobox protein PRH; D 99.8 9.9E-20 3.4E-24 130.8 5.1 63 79-141 4-66 (70)
11 2vi6_A Homeobox protein nanog; 99.8 2.3E-20 8E-25 130.9 1.5 60 81-140 2-61 (62)
12 2da1_A Alpha-fetoprotein enhan 99.8 5.7E-20 1.9E-24 131.9 3.6 64 78-141 3-66 (70)
13 2dmt_A Homeobox protein BARH-l 99.8 5.4E-20 1.8E-24 135.5 3.4 64 77-140 12-75 (80)
14 2hdd_A Protein (engrailed home 99.8 6E-20 2.1E-24 128.4 3.2 58 82-139 3-60 (61)
15 3a01_A Homeodomain-containing 99.8 7.3E-20 2.5E-24 138.7 3.4 67 78-144 13-79 (93)
16 1puf_A HOX-1.7, homeobox prote 99.8 2E-19 6.9E-24 131.5 5.6 64 79-142 10-73 (77)
17 2da3_A Alpha-fetoprotein enhan 99.8 1E-19 3.5E-24 133.8 4.0 65 77-141 12-76 (80)
18 1zq3_P PRD-4, homeotic bicoid 99.8 1.9E-19 6.4E-24 128.6 5.0 61 82-142 2-62 (68)
19 1ig7_A Homeotic protein MSX-1; 99.8 1.2E-19 4.2E-24 125.4 4.0 57 83-139 1-57 (58)
20 1fjl_A Paired protein; DNA-bin 99.8 1.5E-19 5.2E-24 133.4 4.7 64 79-142 15-78 (81)
21 1yz8_P Pituitary homeobox 2; D 99.8 7.5E-20 2.6E-24 130.6 2.9 62 81-142 2-63 (68)
22 2da4_A Hypothetical protein DK 99.8 1.1E-19 3.8E-24 133.8 3.4 63 78-140 4-70 (80)
23 1wh5_A ZF-HD homeobox family p 99.8 1.1E-19 3.9E-24 133.9 3.0 61 79-139 14-78 (80)
24 1ahd_P Antennapedia protein mu 99.8 1.6E-19 5.5E-24 129.0 3.7 60 82-141 2-61 (68)
25 1jgg_A Segmentation protein EV 99.8 1.8E-19 6.1E-24 125.5 3.2 58 83-140 2-59 (60)
26 1b8i_A Ultrabithorax, protein 99.8 1.1E-19 3.8E-24 134.2 2.3 63 79-141 17-79 (81)
27 2kt0_A Nanog, homeobox protein 99.8 1.9E-19 6.5E-24 133.7 3.3 65 77-141 17-81 (84)
28 1bw5_A ISL-1HD, insulin gene e 99.8 1.5E-19 5.2E-24 128.3 2.3 61 81-141 2-62 (66)
29 1wh7_A ZF-HD homeobox family p 99.8 1.8E-19 6.2E-24 132.7 2.8 62 77-139 12-78 (80)
30 1ftt_A TTF-1 HD, thyroid trans 99.8 3E-19 1E-23 127.5 3.6 61 82-142 2-62 (68)
31 1akh_A Protein (mating-type pr 99.8 2.5E-19 8.5E-24 125.1 2.9 59 80-138 3-61 (61)
32 2l7z_A Homeobox protein HOX-A1 99.8 3.2E-19 1.1E-23 129.2 3.6 62 80-141 5-66 (73)
33 3a02_A Homeobox protein arista 99.7 2.5E-19 8.5E-24 124.8 2.7 57 85-141 2-58 (60)
34 2r5y_A Homeotic protein sex co 99.7 3.2E-19 1.1E-23 133.7 3.4 62 79-140 25-86 (88)
35 2ecc_A Homeobox and leucine zi 99.7 4.2E-19 1.4E-23 129.0 3.9 59 84-142 5-63 (76)
36 3a03_A T-cell leukemia homeobo 99.7 4.9E-19 1.7E-23 121.7 3.9 54 87-140 2-55 (56)
37 2hi3_A Homeodomain-only protei 99.7 5.6E-19 1.9E-23 127.8 4.3 59 83-141 3-62 (73)
38 1uhs_A HOP, homeodomain only p 99.7 6.9E-19 2.4E-23 127.0 4.5 58 84-141 3-61 (72)
39 2cuf_A FLJ21616 protein; homeo 99.7 7E-19 2.4E-23 133.7 4.5 66 77-142 2-82 (95)
40 2m0c_A Homeobox protein arista 99.7 5E-19 1.7E-23 128.5 3.5 66 77-142 4-69 (75)
41 1wi3_A DNA-binding protein SAT 99.7 8.1E-19 2.8E-23 123.4 4.2 59 78-136 3-62 (71)
42 3rkq_A Homeobox protein NKX-2. 99.7 6.2E-19 2.1E-23 121.6 3.5 57 82-138 2-58 (58)
43 2k40_A Homeobox expressed in E 99.7 6.7E-19 2.3E-23 125.3 3.6 59 83-141 2-60 (67)
44 1b72_A Protein (homeobox prote 99.7 7.9E-19 2.7E-23 133.9 4.2 63 80-142 32-94 (97)
45 2da5_A Zinc fingers and homeob 99.7 1.3E-18 4.5E-23 126.6 4.3 58 84-141 9-66 (75)
46 1x2n_A Homeobox protein pknox1 99.7 1.9E-18 6.4E-23 125.0 4.8 64 78-141 3-69 (73)
47 3nar_A ZHX1, zinc fingers and 99.7 1E-18 3.4E-23 133.1 2.4 69 79-147 22-90 (96)
48 2da6_A Hepatocyte nuclear fact 99.7 4.8E-18 1.6E-22 129.9 6.1 65 79-143 3-88 (102)
49 2ly9_A Zinc fingers and homeob 99.7 1.1E-18 3.7E-23 126.6 2.1 61 81-141 5-65 (74)
50 2dn0_A Zinc fingers and homeob 99.7 1.6E-18 5.3E-23 126.5 2.7 61 81-141 7-67 (76)
51 1b72_B Protein (PBX1); homeodo 99.7 2.1E-18 7.2E-23 128.9 3.4 61 83-143 2-65 (87)
52 1du6_A PBX1, homeobox protein 99.7 2.6E-18 8.7E-23 121.1 2.7 58 82-139 3-63 (64)
53 2cqx_A LAG1 longevity assuranc 99.7 4.2E-18 1.4E-22 123.0 3.3 58 83-140 9-67 (72)
54 1puf_B PRE-B-cell leukemia tra 99.7 7.3E-18 2.5E-22 121.9 4.5 60 83-142 2-64 (73)
55 2dmn_A Homeobox protein TGIF2L 99.7 8.2E-18 2.8E-22 124.7 4.6 64 78-141 3-69 (83)
56 3nau_A Zinc fingers and homeob 99.7 9.2E-18 3.2E-22 118.1 3.9 53 89-141 11-63 (66)
57 1k61_A Mating-type protein alp 99.7 7.4E-18 2.5E-22 117.2 3.0 54 86-139 2-58 (60)
58 2ecb_A Zinc fingers and homeob 99.7 1.6E-17 5.4E-22 124.6 4.3 54 88-141 17-70 (89)
59 1mnm_C Protein (MAT alpha-2 tr 99.7 1.3E-17 4.5E-22 124.6 2.6 59 80-138 25-86 (87)
60 3d1n_I POU domain, class 6, tr 99.7 2.5E-17 8.5E-22 135.3 3.4 63 77-139 88-150 (151)
61 1au7_A Protein PIT-1, GHF-1; c 99.7 1.7E-17 5.9E-22 135.6 2.4 63 78-140 83-145 (146)
62 2dmp_A Zinc fingers and homeob 99.7 3E-17 1E-21 123.3 3.3 55 87-141 18-72 (89)
63 1lfb_A Liver transcription fac 99.7 1.5E-17 5.1E-22 127.2 1.5 64 79-142 6-90 (99)
64 1le8_B Mating-type protein alp 99.7 2.8E-17 9.4E-22 121.8 2.9 59 84-142 4-65 (83)
65 1e3o_C Octamer-binding transcr 99.7 2.2E-17 7.4E-22 137.0 2.5 61 80-140 99-159 (160)
66 2xsd_C POU domain, class 3, tr 99.7 2.1E-17 7.1E-22 137.6 2.4 63 79-141 96-158 (164)
67 1x2m_A LAG1 longevity assuranc 99.7 2.3E-17 7.8E-22 116.0 2.1 49 91-139 9-58 (64)
68 2e19_A Transcription factor 8; 99.6 2.5E-17 8.5E-22 116.2 2.2 54 86-139 7-60 (64)
69 2l9r_A Homeobox protein NKX-3. 99.6 2.4E-17 8.1E-22 118.0 1.9 55 87-141 9-63 (69)
70 3l1p_A POU domain, class 5, tr 99.6 8.1E-17 2.8E-21 132.8 4.2 61 80-140 94-154 (155)
71 2d5v_A Hepatocyte nuclear fact 99.6 1.3E-16 4.5E-21 132.6 1.9 63 79-141 94-156 (164)
72 3k2a_A Homeobox protein MEIS2; 99.6 1.3E-15 4.4E-20 108.3 3.4 56 87-142 3-61 (67)
73 1ic8_A Hepatocyte nuclear fact 99.5 3.6E-15 1.2E-19 126.9 0.0 61 79-139 112-193 (194)
74 2da7_A Zinc finger homeobox pr 99.5 1.5E-14 5.1E-19 102.4 3.1 45 91-135 14-58 (71)
75 2lk2_A Homeobox protein TGIF1; 99.4 8.8E-14 3E-18 103.7 4.2 57 87-143 10-69 (89)
76 2h8r_A Hepatocyte nuclear fact 99.4 8.1E-14 2.8E-18 120.1 2.4 60 78-137 138-218 (221)
77 1mh3_A Maltose binding-A1 home 99.3 6.5E-13 2.2E-17 123.6 1.2 56 83-138 366-421 (421)
78 1wh7_A ZF-HD homeobox family p 98.9 7.6E-10 2.6E-14 81.1 3.9 57 25-82 14-75 (80)
79 1wh5_A ZF-HD homeobox family p 98.9 4.6E-10 1.6E-14 82.2 2.7 57 25-81 14-74 (80)
80 1wi3_A DNA-binding protein SAT 98.9 4.4E-10 1.5E-14 79.0 2.2 53 25-77 4-57 (71)
81 2dmt_A Homeobox protein BARH-l 98.9 9.9E-10 3.4E-14 80.3 4.1 55 24-78 13-67 (80)
82 2da3_A Alpha-fetoprotein enhan 98.8 1.7E-09 5.7E-14 78.8 3.3 54 26-79 15-68 (80)
83 2djn_A Homeobox protein DLX-5; 98.8 7.2E-10 2.5E-14 78.9 1.1 53 26-78 5-57 (70)
84 2nzz_A Penetratin conjugated G 98.8 6E-10 2.1E-14 69.2 -0.2 20 124-143 1-20 (37)
85 2cra_A Homeobox protein HOX-B1 98.8 6.8E-10 2.3E-14 79.1 -0.0 53 26-78 5-57 (70)
86 2kt0_A Nanog, homeobox protein 98.8 1.5E-09 5E-14 80.0 1.3 56 24-79 18-73 (84)
87 2da2_A Alpha-fetoprotein enhan 98.7 7.8E-10 2.7E-14 78.7 -1.0 54 25-78 4-57 (70)
88 1bw5_A ISL-1HD, insulin gene e 98.7 8.3E-10 2.8E-14 77.7 -1.0 53 27-79 2-54 (66)
89 2dmu_A Homeobox protein goosec 98.7 4.3E-09 1.5E-13 74.8 2.6 53 26-78 5-57 (70)
90 2dms_A Homeobox protein OTX2; 98.7 1.2E-09 4E-14 79.9 -0.4 55 26-80 5-59 (80)
91 2vi6_A Homeobox protein nanog; 98.7 9.9E-10 3.4E-14 76.3 -0.9 53 27-79 2-54 (62)
92 2cue_A Paired box protein PAX6 98.7 8.5E-09 2.9E-13 75.2 3.9 55 26-80 5-59 (80)
93 2m0c_A Homeobox protein arista 98.7 1.6E-09 5.4E-14 77.9 -0.3 56 25-80 6-61 (75)
94 1akh_A Protein (mating-type pr 98.7 3.6E-09 1.2E-13 73.1 1.5 53 25-77 2-54 (61)
95 2da1_A Alpha-fetoprotein enhan 98.7 5.7E-09 2E-13 74.1 2.5 53 26-78 5-57 (70)
96 1du6_A PBX1, homeobox protein 98.7 5.5E-09 1.9E-13 72.9 1.8 55 27-81 2-59 (64)
97 1puf_A HOX-1.7, homeobox prote 98.7 1.2E-08 4.1E-13 73.9 3.7 55 24-78 9-63 (77)
98 1nk2_P Homeobox protein VND; h 98.7 1E-08 3.4E-13 74.3 3.1 55 25-79 6-60 (77)
99 2h1k_A IPF-1, pancreatic and d 98.7 6.2E-09 2.1E-13 72.5 1.8 52 27-78 2-53 (63)
100 2hdd_A Protein (engrailed home 98.7 6E-09 2E-13 72.1 1.6 51 28-78 3-53 (61)
101 2da4_A Hypothetical protein DK 98.6 6.9E-09 2.4E-13 75.7 1.9 55 25-79 5-63 (80)
102 2dmq_A LIM/homeobox protein LH 98.6 1E-08 3.4E-13 74.7 2.7 54 26-79 5-58 (80)
103 1yz8_P Pituitary homeobox 2; D 98.6 9.3E-09 3.2E-13 72.7 2.3 53 27-79 2-54 (68)
104 2e1o_A Homeobox protein PRH; D 98.6 1.1E-08 3.9E-13 72.6 2.8 52 27-78 6-57 (70)
105 2l7z_A Homeobox protein HOX-A1 98.6 1.3E-08 4.5E-13 73.0 3.0 53 26-78 5-57 (73)
106 1zq3_P PRD-4, homeotic bicoid 98.6 1.6E-08 5.6E-13 71.4 3.4 51 28-78 2-52 (68)
107 1ig7_A Homeotic protein MSX-1; 98.6 1E-08 3.5E-13 70.0 1.9 50 29-78 1-50 (58)
108 2k40_A Homeobox expressed in E 98.6 1.9E-08 6.5E-13 70.8 3.2 52 28-79 1-52 (67)
109 2r5y_A Homeotic protein sex co 98.6 1.7E-08 5.9E-13 74.9 3.1 55 24-78 24-78 (88)
110 1jgg_A Segmentation protein EV 98.6 1.3E-08 4.3E-13 70.1 1.8 50 29-78 2-51 (60)
111 1ftt_A TTF-1 HD, thyroid trans 98.6 2.4E-09 8.1E-14 75.8 -2.0 51 28-78 2-52 (68)
112 1fjl_A Paired protein; DNA-bin 98.6 1.8E-08 6.1E-13 73.7 2.2 55 25-79 15-69 (81)
113 2dn0_A Zinc fingers and homeob 98.6 5.7E-09 2E-13 75.4 -0.7 52 27-78 7-58 (76)
114 3a01_A Homeodomain-containing 98.6 4E-08 1.4E-12 73.8 3.9 55 25-79 14-68 (93)
115 1ahd_P Antennapedia protein mu 98.6 1.9E-08 6.5E-13 71.1 1.9 51 28-78 2-52 (68)
116 1b8i_A Ultrabithorax, protein 98.5 1.9E-08 6.5E-13 73.6 1.8 55 25-79 17-71 (81)
117 3rkq_A Homeobox protein NKX-2. 98.5 3.9E-08 1.3E-12 66.9 3.2 50 28-77 2-51 (58)
118 2ecc_A Homeobox and leucine zi 98.5 2.7E-08 9.1E-13 71.9 1.7 49 31-79 6-54 (76)
119 2cuf_A FLJ21616 protein; homeo 98.5 7.4E-09 2.5E-13 78.1 -1.4 54 26-79 5-73 (95)
120 1b72_A Protein (homeobox prote 98.5 5.8E-08 2E-12 73.4 2.9 54 26-79 32-85 (97)
121 1x2n_A Homeobox protein pknox1 98.5 6.2E-08 2.1E-12 69.3 2.7 53 26-78 5-60 (73)
122 2ly9_A Zinc fingers and homeob 98.5 1.6E-08 5.5E-13 72.6 -0.5 52 27-78 5-56 (74)
123 3a02_A Homeobox protein arista 98.5 8.4E-09 2.9E-13 71.0 -2.0 48 31-78 2-49 (60)
124 1lfb_A Liver transcription fac 98.5 2.3E-08 7.9E-13 76.0 0.2 54 26-79 7-81 (99)
125 1puf_B PRE-B-cell leukemia tra 98.4 9.5E-08 3.2E-12 68.3 3.3 52 28-79 1-55 (73)
126 2da6_A Hepatocyte nuclear fact 98.4 2.4E-08 8.2E-13 76.1 -0.3 40 26-65 4-43 (102)
127 2da5_A Zinc fingers and homeob 98.4 4E-08 1.4E-12 70.8 0.3 52 30-81 9-60 (75)
128 2hi3_A Homeodomain-only protei 98.4 1.3E-07 4.5E-12 67.6 2.8 51 29-79 3-54 (73)
129 1b72_B Protein (PBX1); homeodo 98.4 1.4E-07 4.9E-12 69.6 3.0 52 29-80 2-56 (87)
130 1uhs_A HOP, homeodomain only p 98.4 1.6E-07 5.5E-12 67.0 2.7 50 30-79 3-53 (72)
131 2dmn_A Homeobox protein TGIF2L 98.3 2.2E-07 7.4E-12 68.3 2.8 53 27-79 6-61 (83)
132 3nar_A ZHX1, zinc fingers and 98.3 3E-08 1E-12 74.9 -1.9 53 27-79 24-76 (96)
133 3a03_A T-cell leukemia homeobo 98.3 2.1E-08 7.3E-13 68.1 -2.5 47 33-79 2-48 (56)
134 1mnm_C Protein (MAT alpha-2 tr 98.3 1.6E-07 5.3E-12 69.5 1.3 53 26-78 25-80 (87)
135 1e3o_C Octamer-binding transcr 98.3 4.5E-08 1.5E-12 80.7 -1.8 54 26-79 99-152 (160)
136 1au7_A Protein PIT-1, GHF-1; c 98.3 6E-08 2E-12 78.8 -1.2 55 25-79 84-138 (146)
137 3d1n_I POU domain, class 6, tr 98.3 7.4E-08 2.5E-12 78.6 -0.8 54 26-79 91-144 (151)
138 1k61_A Mating-type protein alp 98.3 4.2E-08 1.4E-12 67.5 -2.0 47 32-78 2-51 (60)
139 2xsd_C POU domain, class 3, tr 98.2 6E-08 2E-12 80.3 -2.0 56 25-80 96-151 (164)
140 1le8_B Mating-type protein alp 98.2 8.7E-08 3E-12 70.4 -1.9 51 30-80 4-57 (83)
141 2d5v_A Hepatocyte nuclear fact 98.2 1.4E-07 4.7E-12 77.9 -0.9 54 26-79 95-148 (164)
142 2dmp_A Zinc fingers and homeob 98.2 2.5E-07 8.7E-12 68.8 -0.1 48 33-80 18-65 (89)
143 3l1p_A POU domain, class 5, tr 98.1 3.1E-07 1E-11 75.3 -0.5 54 26-79 94-147 (155)
144 2ecb_A Zinc fingers and homeob 98.0 3.3E-07 1.1E-11 68.2 -1.3 47 34-80 17-63 (89)
145 2e19_A Transcription factor 8; 98.0 9E-07 3.1E-11 61.8 0.9 47 33-79 8-54 (64)
146 2h8r_A Hepatocyte nuclear fact 97.9 1.2E-06 4.2E-11 75.4 0.1 45 24-68 138-182 (221)
147 1ic8_A Hepatocyte nuclear fact 97.9 5.2E-07 1.8E-11 76.5 -2.3 42 25-66 112-153 (194)
148 2cqx_A LAG1 longevity assuranc 97.9 2.1E-06 7.2E-11 61.3 0.9 50 30-79 10-60 (72)
149 3nau_A Zinc fingers and homeob 97.9 2.5E-06 8.7E-11 59.7 1.1 45 35-79 11-55 (66)
150 2l9r_A Homeobox protein NKX-3. 97.8 1.3E-06 4.4E-11 62.0 -1.7 47 33-79 9-55 (69)
151 3k2a_A Homeobox protein MEIS2; 97.7 1.5E-05 5.3E-10 55.9 2.0 45 34-78 4-51 (67)
152 2da7_A Zinc finger homeobox pr 97.5 1.8E-05 6.3E-10 55.8 0.9 42 37-78 14-55 (71)
153 1x2m_A LAG1 longevity assuranc 97.4 1.4E-05 4.8E-10 55.7 -1.5 43 37-79 9-52 (64)
154 1mh3_A Maltose binding-A1 home 97.0 7.6E-05 2.6E-09 68.8 -1.3 53 28-80 365-417 (421)
155 2lk2_A Homeobox protein TGIF1; 96.9 0.00022 7.5E-09 52.8 0.7 47 33-79 10-59 (89)
156 2ys9_A Homeobox and leucine zi 95.3 0.009 3.1E-07 41.8 2.6 42 90-131 14-55 (70)
157 2rgt_A Fusion of LIM/homeobox 84.7 0.21 7.2E-06 40.4 0.4 31 80-110 134-164 (169)
158 2rgt_A Fusion of LIM/homeobox 81.9 0.054 1.9E-06 44.0 -4.3 30 26-55 134-163 (169)
159 1u78_A TC3 transposase, transp 76.0 4 0.00014 30.8 5.1 93 33-135 5-105 (141)
160 1hlv_A CENP-B, major centromer 73.1 2.2 7.5E-05 32.3 2.9 48 85-135 4-51 (131)
161 3hug_A RNA polymerase sigma fa 71.3 4.2 0.00014 28.9 3.9 47 89-140 38-84 (92)
162 1jko_C HIN recombinase, DNA-in 70.7 1.8 6.1E-05 26.6 1.6 42 89-135 6-47 (52)
163 1pdn_C Protein (PRD paired); p 70.6 9 0.00031 28.0 5.8 94 34-132 17-126 (128)
164 1iuf_A Centromere ABP1 protein 70.6 17 0.00058 28.1 7.7 41 29-72 6-53 (144)
165 2glo_A Brinker CG9653-PA; prot 67.8 2.5 8.7E-05 27.6 1.9 44 87-131 4-47 (59)
166 2elh_A CG11849-PA, LD40883P; s 67.7 2.5 8.4E-05 30.0 1.9 43 84-131 18-60 (87)
167 2o8x_A Probable RNA polymerase 65.1 3 0.0001 27.6 1.8 46 89-139 16-61 (70)
168 2k27_A Paired box protein PAX- 62.5 22 0.00076 27.5 6.9 93 34-131 25-133 (159)
169 1tc3_C Protein (TC3 transposas 59.9 5.7 0.0002 23.7 2.4 40 89-133 6-45 (51)
170 1je8_A Nitrate/nitrite respons 57.9 6.4 0.00022 27.4 2.6 49 87-141 20-68 (82)
171 1hlv_A CENP-B, major centromer 56.9 13 0.00046 27.7 4.5 39 31-72 4-42 (131)
172 2p7v_B Sigma-70, RNA polymeras 56.5 6.5 0.00022 26.1 2.4 50 88-138 5-54 (68)
173 1iuf_A Centromere ABP1 protein 55.6 8 0.00027 30.1 3.1 50 83-132 6-59 (144)
174 3mzy_A RNA polymerase sigma-H 55.2 11 0.00036 28.7 3.7 47 88-140 109-155 (164)
175 1fse_A GERE; helix-turn-helix 54.9 6.9 0.00024 26.0 2.3 47 87-139 10-56 (74)
176 3c57_A Two component transcrip 54.2 8.3 0.00028 27.6 2.7 45 88-138 27-71 (95)
177 1p4w_A RCSB; solution structur 53.2 6.7 0.00023 28.7 2.1 46 87-138 33-78 (99)
178 1x3u_A Transcriptional regulat 53.0 8.3 0.00028 26.1 2.5 48 88-141 16-63 (79)
179 1k78_A Paired box protein PAX5 52.8 28 0.00095 26.5 5.8 92 34-133 32-142 (149)
180 1ku3_A Sigma factor SIGA; heli 51.8 13 0.00043 25.0 3.3 49 89-138 11-59 (73)
181 2x7l_M HIV REV; nuclear export 50.3 13 0.00044 28.1 3.2 38 95-146 16-53 (115)
182 1s7o_A Hypothetical UPF0122 pr 49.7 10 0.00034 28.4 2.6 49 88-141 22-70 (113)
183 3lph_A Protein REV; helix-loop 48.3 11 0.00039 26.0 2.4 37 95-145 19-55 (72)
184 1xsv_A Hypothetical UPF0122 pr 46.0 16 0.00055 27.2 3.3 48 89-141 26-73 (113)
185 2rnj_A Response regulator prot 45.9 7.8 0.00027 27.4 1.4 47 88-140 29-75 (91)
186 2lv7_A Calcium-binding protein 45.6 22 0.00074 25.5 3.9 46 85-130 26-78 (100)
187 2jn6_A Protein CGL2762, transp 45.0 13 0.00043 26.4 2.5 43 87-132 4-46 (97)
188 1rp3_A RNA polymerase sigma fa 44.8 12 0.0004 30.5 2.6 47 89-140 188-234 (239)
189 1or7_A Sigma-24, RNA polymeras 43.2 14 0.00049 29.0 2.8 47 89-140 141-187 (194)
190 2xi8_A Putative transcription 41.4 13 0.00044 23.7 1.9 25 112-136 17-41 (66)
191 1tty_A Sigma-A, RNA polymerase 40.4 12 0.00042 26.2 1.7 49 89-138 19-67 (87)
192 2r1j_L Repressor protein C2; p 40.1 14 0.00048 23.7 1.9 24 112-135 21-44 (68)
193 1fi6_A EH domain protein REPS1 39.9 14 0.00049 25.8 2.0 44 88-131 2-50 (92)
194 2jpc_A SSRB; DNA binding prote 39.5 13 0.00045 23.7 1.6 29 112-140 16-44 (61)
195 3bd1_A CRO protein; transcript 38.5 14 0.00047 25.0 1.7 25 112-136 14-38 (79)
196 1zug_A Phage 434 CRO protein; 38.4 15 0.00051 23.8 1.8 25 112-136 19-43 (71)
197 3bs3_A Putative DNA-binding pr 37.5 16 0.00055 24.0 1.9 24 112-135 26-49 (76)
198 3ulq_B Transcriptional regulat 36.6 25 0.00086 24.9 3.0 47 85-137 26-72 (90)
199 2x48_A CAG38821; archeal virus 35.8 19 0.00065 22.4 2.0 39 88-131 13-53 (55)
200 1c07_A Protein (epidermal grow 35.6 19 0.00066 25.3 2.2 44 88-131 3-51 (95)
201 2pmy_A RAS and EF-hand domain- 35.4 19 0.00065 24.8 2.1 45 87-131 19-68 (91)
202 3omt_A Uncharacterized protein 35.1 19 0.00065 23.7 2.0 24 112-135 24-47 (73)
203 1adr_A P22 C2 repressor; trans 35.1 18 0.00062 23.7 1.9 24 112-135 21-44 (76)
204 2b5a_A C.BCLI; helix-turn-heli 33.6 20 0.00069 23.6 1.9 24 112-135 26-49 (77)
205 1r69_A Repressor protein CI; g 33.5 20 0.00069 23.0 1.9 25 112-136 17-41 (69)
206 2hin_A GP39, repressor protein 33.1 33 0.0011 23.5 2.9 27 112-138 13-39 (71)
207 2lfw_A PHYR sigma-like domain; 33.1 22 0.00074 27.5 2.3 45 89-138 94-138 (157)
208 2q24_A Putative TETR family tr 32.6 15 0.0005 28.7 1.2 40 95-136 22-61 (194)
209 2qwt_A Transcriptional regulat 32.4 18 0.00062 28.4 1.7 40 95-136 20-59 (196)
210 3b7h_A Prophage LP1 protein 11 31.7 23 0.00079 23.4 2.0 23 112-134 23-45 (78)
211 3kz3_A Repressor protein CI; f 31.6 23 0.00078 23.9 1.9 24 112-135 28-51 (80)
212 1y7y_A C.AHDI; helix-turn-heli 31.5 23 0.00079 23.0 1.9 24 112-135 29-52 (74)
213 2kpj_A SOS-response transcript 31.1 23 0.00077 24.8 1.9 25 112-136 25-49 (94)
214 2a6c_A Helix-turn-helix motif; 30.1 26 0.0009 23.9 2.1 24 112-135 34-57 (83)
215 3t72_q RNA polymerase sigma fa 29.4 56 0.0019 23.7 3.9 52 89-141 20-71 (99)
216 2k9q_A Uncharacterized protein 28.2 28 0.00095 23.2 1.9 24 112-135 18-41 (77)
217 2wiu_B HTH-type transcriptiona 28.2 31 0.0011 23.4 2.2 24 112-135 28-51 (88)
218 2qko_A Possible transcriptiona 27.8 29 0.00098 27.4 2.2 41 95-136 35-75 (215)
219 1etf_B REV peptide; complex (R 27.5 35 0.0012 18.9 1.8 14 131-144 7-20 (26)
220 2q1z_A RPOE, ECF SIGE; ECF sig 27.4 17 0.00057 28.4 0.7 27 113-139 155-181 (184)
221 2ef8_A C.ECOT38IS, putative tr 27.1 30 0.001 23.1 1.9 24 112-135 26-49 (84)
222 2kvr_A Ubiquitin carboxyl-term 26.9 22 0.00074 27.5 1.2 24 111-134 71-94 (130)
223 1j9i_A GPNU1 DBD;, terminase s 26.4 34 0.0012 22.6 2.0 21 112-132 5-25 (68)
224 2ict_A Antitoxin HIGA; helix-t 26.2 30 0.001 24.0 1.8 24 112-135 24-47 (94)
225 3f6w_A XRE-family like protein 26.0 32 0.0011 23.1 1.9 24 112-135 30-53 (83)
226 2q0o_A Probable transcriptiona 25.9 42 0.0014 27.7 3.0 46 87-138 174-219 (236)
227 1rzs_A Antirepressor, regulato 25.0 31 0.0011 22.4 1.6 19 112-130 13-31 (61)
228 2rek_A Putative TETR-family tr 24.7 19 0.00064 28.1 0.5 40 95-136 23-62 (199)
229 3t76_A VANU, transcriptional r 24.4 35 0.0012 24.1 1.9 25 111-135 39-63 (88)
230 1l0o_C Sigma factor; bergerat 24.0 16 0.00056 29.6 0.0 44 89-137 199-242 (243)
231 2lhi_A Calmodulin, serine/thre 24.0 65 0.0022 25.1 3.7 38 86-123 2-44 (176)
232 1lmb_3 Protein (lambda repress 23.7 37 0.0013 23.3 1.9 24 112-135 33-56 (92)
233 2v57_A TETR family transcripti 23.6 34 0.0012 26.2 1.9 38 97-137 23-60 (190)
234 3fmy_A HTH-type transcriptiona 23.6 41 0.0014 22.3 2.0 43 87-136 9-51 (73)
235 3g1o_A Transcriptional regulat 23.5 27 0.00091 28.7 1.3 43 94-137 49-91 (255)
236 3clo_A Transcriptional regulat 23.4 42 0.0014 28.2 2.5 48 88-141 197-244 (258)
237 3o9x_A Uncharacterized HTH-typ 23.3 39 0.0013 25.2 2.1 41 89-136 71-111 (133)
238 3s8q_A R-M controller protein; 23.2 39 0.0013 22.6 1.9 24 112-135 27-50 (82)
239 2l49_A C protein; P2 bacteriop 22.7 41 0.0014 23.4 2.0 24 112-135 20-43 (99)
240 3qq6_A HTH-type transcriptiona 22.4 41 0.0014 22.6 1.9 21 112-132 26-46 (78)
241 1l3l_A Transcriptional activat 22.3 56 0.0019 26.9 3.0 46 87-138 172-217 (234)
242 3osg_A MYB21; transcription-DN 22.2 16 0.00054 27.8 -0.4 71 28-102 7-78 (126)
243 1x57_A Endothelial differentia 22.1 39 0.0013 23.2 1.8 24 112-135 29-52 (91)
244 1j7q_A CAVP, calcium vector pr 21.9 80 0.0027 20.8 3.4 36 87-122 6-46 (86)
245 2k27_A Paired box protein PAX- 21.6 67 0.0023 24.6 3.2 40 88-132 25-64 (159)
246 3i5g_B Myosin regulatory light 21.1 69 0.0024 24.4 3.2 38 86-123 7-49 (153)
247 3ccy_A Putative TETR-family tr 20.9 50 0.0017 25.7 2.4 42 95-137 21-62 (203)
248 3jsj_A Putative TETR-family tr 20.9 32 0.0011 26.4 1.2 43 95-139 16-58 (190)
249 2jml_A DNA binding domain/tran 20.8 40 0.0014 23.1 1.6 21 111-131 7-27 (81)
250 2bnk_A Early protein GP16.7; D 20.2 92 0.0031 20.7 3.0 52 89-140 5-56 (67)
251 3dcf_A Transcriptional regulat 20.1 37 0.0013 26.4 1.4 41 95-136 38-78 (218)
No 1
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.81 E-value=2.4e-20 Score=137.43 Aligned_cols=68 Identities=25% Similarity=0.458 Sum_probs=62.8
Q ss_pred CCCCCccceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHHHHHH
Q psy4078 78 GDGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRALAMK 145 (269)
Q Consensus 78 ~~~k~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~~~~~ 145 (269)
...+.+|.|+.|+.+|+.+||.+|..++||+..++++||..|||++.+|+|||||||+|+||++....
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~~ 70 (80)
T 2cue_A 3 SGSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRN 70 (80)
T ss_dssp SCCSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhhh
Confidence 34567789999999999999999999999999999999999999999999999999999999876543
No 2
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=3.1e-20 Score=133.36 Aligned_cols=64 Identities=28% Similarity=0.528 Sum_probs=60.0
Q ss_pred CCCCCccceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHH
Q psy4078 78 GDGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRA 141 (269)
Q Consensus 78 ~~~k~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~ 141 (269)
...+.+|.|+.|+.+|+.+||.+|..++||+..++++||..|||++.+|+|||||||+|+||..
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 3 SGSSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp STTSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 4456778999999999999999999999999999999999999999999999999999999863
No 3
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.79 E-value=2.4e-20 Score=134.02 Aligned_cols=65 Identities=31% Similarity=0.444 Sum_probs=60.3
Q ss_pred CCCCCCccceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHH
Q psy4078 77 GGDGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRA 141 (269)
Q Consensus 77 ~~~~k~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~ 141 (269)
+...+.+|.|+.|+.+|+.+||.+|..++||+..++++||..|||++.+|+|||||||+|+||..
T Consensus 2 s~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 2 SSGSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CSSCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 34556778999999999999999999999999999999999999999999999999999999853
No 4
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=6e-20 Score=135.17 Aligned_cols=65 Identities=37% Similarity=0.607 Sum_probs=60.8
Q ss_pred CCCCCccceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHHH
Q psy4078 78 GDGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRAL 142 (269)
Q Consensus 78 ~~~k~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~~ 142 (269)
...+.+|.|+.|+.+|+.+||.+|+.++||+..++++||..|||++.+|+|||||||+|+||+..
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (80)
T 2dmq_A 3 SGSSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLL 67 (80)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHH
Confidence 34567789999999999999999999999999999999999999999999999999999999754
No 5
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.79 E-value=3.7e-20 Score=136.39 Aligned_cols=65 Identities=28% Similarity=0.520 Sum_probs=60.8
Q ss_pred CCCCCCccceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHH
Q psy4078 77 GGDGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRA 141 (269)
Q Consensus 77 ~~~~k~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~ 141 (269)
....+.+|.|+.|+.+|+.+||.+|..++||+..++++||..|||++.+|+|||||||+|+||++
T Consensus 2 s~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~ 66 (80)
T 2dms_A 2 SSGSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQ 66 (80)
T ss_dssp CCCCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTT
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHH
Confidence 34567788999999999999999999999999999999999999999999999999999999874
No 6
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.79 E-value=8.3e-20 Score=133.57 Aligned_cols=66 Identities=26% Similarity=0.444 Sum_probs=61.1
Q ss_pred CCCCCCccceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHHH
Q psy4078 77 GGDGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRAL 142 (269)
Q Consensus 77 ~~~~k~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~~ 142 (269)
+...+.+|.|+.|+..|+.+||.+|..++||+..++++||..|||++.+|+|||||||+|+|+...
T Consensus 4 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~ 69 (77)
T 1nk2_P 4 GLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQN 69 (77)
T ss_dssp CCSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhc
Confidence 344567788999999999999999999999999999999999999999999999999999998754
No 7
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.79 E-value=3.4e-20 Score=130.51 Aligned_cols=61 Identities=34% Similarity=0.441 Sum_probs=56.3
Q ss_pred CCccceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHH
Q psy4078 81 KPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRA 141 (269)
Q Consensus 81 k~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~ 141 (269)
+.+|.|+.|+..|+.+||..|..++||+..++++||..|||++.+|+|||||||+|+||.+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 3568899999999999999999999999999999999999999999999999999999863
No 8
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=4.1e-20 Score=132.76 Aligned_cols=64 Identities=25% Similarity=0.387 Sum_probs=59.9
Q ss_pred CCCCCCccceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHH
Q psy4078 77 GGDGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKR 140 (269)
Q Consensus 77 ~~~~k~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~ 140 (269)
....+.+|.|+.|+.+|+.+||.+|..++||+..++++||..|||++.+|+|||||||+|+||.
T Consensus 2 s~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2djn_A 2 SSGSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKS 65 (70)
T ss_dssp CSCCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSS
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhccc
Confidence 3455678899999999999999999999999999999999999999999999999999999975
No 9
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.78 E-value=4.5e-20 Score=132.48 Aligned_cols=65 Identities=37% Similarity=0.521 Sum_probs=60.6
Q ss_pred CCCCCCccceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHH
Q psy4078 77 GGDGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRA 141 (269)
Q Consensus 77 ~~~~k~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~ 141 (269)
+...+.++.|+.|+.+|+.+||.+|..++||+..++++||..|||++.+|+|||||||+|+||+.
T Consensus 2 ~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 2 SSGSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CCSCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 34567788999999999999999999999999999999999999999999999999999999753
No 10
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=9.9e-20 Score=130.76 Aligned_cols=63 Identities=21% Similarity=0.355 Sum_probs=59.0
Q ss_pred CCCCccceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHH
Q psy4078 79 DGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRA 141 (269)
Q Consensus 79 ~~k~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~ 141 (269)
..+.++.|+.|+.+|+.+||.+|..++||+..++++||..|||++.+|+|||||||+|+|+..
T Consensus 4 ~~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 4 GSSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 445667899999999999999999999999999999999999999999999999999999863
No 11
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.78 E-value=2.3e-20 Score=130.88 Aligned_cols=60 Identities=28% Similarity=0.472 Sum_probs=53.0
Q ss_pred CCccceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHH
Q psy4078 81 KPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKR 140 (269)
Q Consensus 81 k~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~ 140 (269)
+.+|.|+.|+.+|+.+||..|..++||+..++++||..+||++.+|+|||||||+|+||.
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 457889999999999999999999999999999999999999999999999999999985
No 12
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.78 E-value=5.7e-20 Score=131.94 Aligned_cols=64 Identities=25% Similarity=0.516 Sum_probs=60.0
Q ss_pred CCCCCccceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHH
Q psy4078 78 GDGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRA 141 (269)
Q Consensus 78 ~~~k~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~ 141 (269)
...+.+|.|+.|+.+|+.+||.+|+.++||+..++++||..|||++.+|+|||||||+|+||..
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 3 SGSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp SSCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 4456778999999999999999999999999999999999999999999999999999999863
No 13
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=5.4e-20 Score=135.55 Aligned_cols=64 Identities=31% Similarity=0.371 Sum_probs=60.1
Q ss_pred CCCCCCccceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHH
Q psy4078 77 GGDGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKR 140 (269)
Q Consensus 77 ~~~~k~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~ 140 (269)
....+.+|.|+.|+.+|+.+||.+|..++||+..++++||..|||++.+|+|||||||+|+||.
T Consensus 12 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 75 (80)
T 2dmt_A 12 TKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKS 75 (80)
T ss_dssp CCCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcc
Confidence 3456678899999999999999999999999999999999999999999999999999999975
No 14
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.78 E-value=6e-20 Score=128.35 Aligned_cols=58 Identities=34% Similarity=0.503 Sum_probs=53.3
Q ss_pred CccceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHH
Q psy4078 82 PTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKK 139 (269)
Q Consensus 82 ~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk 139 (269)
.+|.|+.|+.+|+.+||..|..++||+..++++||..+||++.+|+|||||||+|+||
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 5688999999999999999999999999999999999999999999999999999986
No 15
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.77 E-value=7.3e-20 Score=138.69 Aligned_cols=67 Identities=18% Similarity=0.298 Sum_probs=62.0
Q ss_pred CCCCCccceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHHHHH
Q psy4078 78 GDGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRALAM 144 (269)
Q Consensus 78 ~~~k~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~~~~ 144 (269)
...+.+|.|+.|+.+|+.+||..|..++||+..++++||..|||++.+|+|||||||+|+|+.....
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~ 79 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEE 79 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHH
Confidence 3456778899999999999999999999999999999999999999999999999999999987643
No 16
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.77 E-value=2e-19 Score=131.51 Aligned_cols=64 Identities=23% Similarity=0.306 Sum_probs=60.5
Q ss_pred CCCCccceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHHH
Q psy4078 79 DGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRAL 142 (269)
Q Consensus 79 ~~k~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~~ 142 (269)
.++.++.|+.|+.+|+.+||.+|..++||+..++++||..|||++.+|+|||||||+|+|+...
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence 4566789999999999999999999999999999999999999999999999999999999865
No 17
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.77 E-value=1e-19 Score=133.85 Aligned_cols=65 Identities=29% Similarity=0.543 Sum_probs=60.4
Q ss_pred CCCCCCccceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHH
Q psy4078 77 GGDGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRA 141 (269)
Q Consensus 77 ~~~~k~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~ 141 (269)
....+.+|.|+.|+.+|+.+||.+|..++||+..++++||.+|||++.+|+|||||||+|+||.+
T Consensus 12 ~~~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 12 EEPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 34556788999999999999999999999999999999999999999999999999999999863
No 18
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.77 E-value=1.9e-19 Score=128.62 Aligned_cols=61 Identities=23% Similarity=0.384 Sum_probs=58.4
Q ss_pred CccceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHHH
Q psy4078 82 PTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRAL 142 (269)
Q Consensus 82 ~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~~ 142 (269)
++|.|+.|+.+|+.+||..|..++||+..++++||..|||++.+|+|||||||+|+|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~ 62 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 62 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhc
Confidence 4678999999999999999999999999999999999999999999999999999999864
No 19
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.77 E-value=1.2e-19 Score=125.39 Aligned_cols=57 Identities=23% Similarity=0.431 Sum_probs=55.2
Q ss_pred ccceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHH
Q psy4078 83 TRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKK 139 (269)
Q Consensus 83 rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk 139 (269)
+|.|+.|+.+|+.+||..|..++||+..++++||..+||++.+|++||||||+|+||
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 467999999999999999999999999999999999999999999999999999987
No 20
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.77 E-value=1.5e-19 Score=133.41 Aligned_cols=64 Identities=34% Similarity=0.584 Sum_probs=59.5
Q ss_pred CCCCccceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHHH
Q psy4078 79 DGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRAL 142 (269)
Q Consensus 79 ~~k~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~~ 142 (269)
.++.+|.|+.|+.+|+.+||.+|..++||+..++++||..|||++.+|+|||||||+|+||+..
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 4567789999999999999999999999999999999999999999999999999999999764
No 21
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.77 E-value=7.5e-20 Score=130.64 Aligned_cols=62 Identities=35% Similarity=0.581 Sum_probs=59.0
Q ss_pred CCccceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHHH
Q psy4078 81 KPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRAL 142 (269)
Q Consensus 81 k~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~~ 142 (269)
+.+|.|+.|+.+|+.+||.+|..++||+..++++||..|||++.+|+|||||||+|+|+.+.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 46788999999999999999999999999999999999999999999999999999998754
No 22
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.1e-19 Score=133.81 Aligned_cols=63 Identities=21% Similarity=0.331 Sum_probs=59.4
Q ss_pred CCCCCccceeecchhhhhhhhhhcccC----CCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHH
Q psy4078 78 GDGKPTRVRTVLNEKQLHTLRTCYNAN----PRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKR 140 (269)
Q Consensus 78 ~~~k~rr~Rt~~t~~Ql~~Le~~F~~~----~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~ 140 (269)
...+.+|.|+.|+.+|+.+||.+|+.+ +||+..++++||..|||++.+|+|||||||+|+|+.
T Consensus 4 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 4 GSSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 345677899999999999999999999 999999999999999999999999999999999985
No 23
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.76 E-value=1.1e-19 Score=133.86 Aligned_cols=61 Identities=20% Similarity=0.345 Sum_probs=57.7
Q ss_pred CCCCccceeecchhhhhhhhhhccc----CCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHH
Q psy4078 79 DGKPTRVRTVLNEKQLHTLRTCYNA----NPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKK 139 (269)
Q Consensus 79 ~~k~rr~Rt~~t~~Ql~~Le~~F~~----~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk 139 (269)
..+.+|.||.|+.+|+.+||.+|+. ++||+..+|++||..|||++++|+|||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 4567889999999999999999999 999999999999999999999999999999999874
No 24
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.76 E-value=1.6e-19 Score=128.97 Aligned_cols=60 Identities=27% Similarity=0.356 Sum_probs=57.4
Q ss_pred CccceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHH
Q psy4078 82 PTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRA 141 (269)
Q Consensus 82 ~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~ 141 (269)
.+|.|+.|+.+|+.+||..|..++||+..++++||..+||++.+|+|||||||+|+||..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhc
Confidence 467899999999999999999999999999999999999999999999999999999874
No 25
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.76 E-value=1.8e-19 Score=125.52 Aligned_cols=58 Identities=33% Similarity=0.499 Sum_probs=55.4
Q ss_pred ccceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHH
Q psy4078 83 TRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKR 140 (269)
Q Consensus 83 rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~ 140 (269)
+|.|+.|+.+|+.+||..|..++||+..++++||..+||++.+|++||||||+|+||+
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5789999999999999999999999999999999999999999999999999999985
No 26
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.76 E-value=1.1e-19 Score=134.20 Aligned_cols=63 Identities=27% Similarity=0.391 Sum_probs=54.7
Q ss_pred CCCCccceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHH
Q psy4078 79 DGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRA 141 (269)
Q Consensus 79 ~~k~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~ 141 (269)
.++.+|.|+.|+.+|+.+||..|..++||+..++++||..|||++.+|+|||||||+|+||+.
T Consensus 17 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 17 NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp -------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 345678999999999999999999999999999999999999999999999999999999864
No 27
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.76 E-value=1.9e-19 Score=133.69 Aligned_cols=65 Identities=28% Similarity=0.401 Sum_probs=60.6
Q ss_pred CCCCCCccceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHH
Q psy4078 77 GGDGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRA 141 (269)
Q Consensus 77 ~~~~k~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~ 141 (269)
....+.+|.|+.|+.+|+.+||.+|..++||+..++++||..|||++.+|+|||||||+|+||.+
T Consensus 17 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 17 KVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CCCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 44567788999999999999999999999999999999999999999999999999999999863
No 28
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.76 E-value=1.5e-19 Score=128.27 Aligned_cols=61 Identities=93% Similarity=1.391 Sum_probs=58.1
Q ss_pred CCccceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHH
Q psy4078 81 KPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRA 141 (269)
Q Consensus 81 k~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~ 141 (269)
+.+|.|+.|+.+|+.+||.+|+.++||+..++++||..+||++.+|++||||||+|+|+++
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 4678899999999999999999999999999999999999999999999999999999864
No 29
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.75 E-value=1.8e-19 Score=132.73 Aligned_cols=62 Identities=19% Similarity=0.414 Sum_probs=57.5
Q ss_pred CCCCCCccceeecchhhhhhhhhhccc-----CCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHH
Q psy4078 77 GGDGKPTRVRTVLNEKQLHTLRTCYNA-----NPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKK 139 (269)
Q Consensus 77 ~~~~k~rr~Rt~~t~~Ql~~Le~~F~~-----~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk 139 (269)
....+++|.||.|+.+|+.+|| .|.. ++||+..+|++||.+|||++.+|+|||||||+|+|+
T Consensus 12 ~~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 12 SSGGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 3455678899999999999999 8999 999999999999999999999999999999999874
No 30
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.75 E-value=3e-19 Score=127.53 Aligned_cols=61 Identities=28% Similarity=0.505 Sum_probs=58.0
Q ss_pred CccceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHHH
Q psy4078 82 PTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRAL 142 (269)
Q Consensus 82 ~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~~ 142 (269)
.+|.|+.|+.+|+.+||..|..++||+..++++||..|||++.+|+|||||||+|+|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 4678999999999999999999999999999999999999999999999999999998753
No 31
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.75 E-value=2.5e-19 Score=125.12 Aligned_cols=59 Identities=22% Similarity=0.437 Sum_probs=48.6
Q ss_pred CCCccceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHH
Q psy4078 80 GKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDK 138 (269)
Q Consensus 80 ~k~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~k 138 (269)
.+.++.|+.|+.+|+.+||.+|..++||+..++++||..+||++.+|++||||||+|+|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 46678999999999999999999999999999999999999999999999999999986
No 32
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.75 E-value=3.2e-19 Score=129.17 Aligned_cols=62 Identities=31% Similarity=0.424 Sum_probs=58.5
Q ss_pred CCCccceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHH
Q psy4078 80 GKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRA 141 (269)
Q Consensus 80 ~k~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~ 141 (269)
.+.+|.|+.|+.+|+.+||..|..++||+..++++||..+||++.+|+|||||||+|+||..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 35678899999999999999999999999999999999999999999999999999999864
No 33
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.75 E-value=2.5e-19 Score=124.79 Aligned_cols=57 Identities=30% Similarity=0.515 Sum_probs=50.7
Q ss_pred ceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHH
Q psy4078 85 VRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRA 141 (269)
Q Consensus 85 ~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~ 141 (269)
.|+.||.+|+.+||..|..++||+..++++||..+||++.+|++||||||+|+||++
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 479999999999999999999999999999999999999999999999999999875
No 34
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.75 E-value=3.2e-19 Score=133.69 Aligned_cols=62 Identities=29% Similarity=0.423 Sum_probs=55.0
Q ss_pred CCCCccceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHH
Q psy4078 79 DGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKR 140 (269)
Q Consensus 79 ~~k~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~ 140 (269)
.++.+|.|+.|+.+|+.+||..|..++||+..++++||..|||++.+|+|||||||+|+||+
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 44667899999999999999999999999999999999999999999999999999999985
No 35
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=4.2e-19 Score=128.98 Aligned_cols=59 Identities=20% Similarity=0.235 Sum_probs=55.2
Q ss_pred cceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHHH
Q psy4078 84 RVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRAL 142 (269)
Q Consensus 84 r~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~~ 142 (269)
..|+.||.+|+.+|+++|..++||+..+|++||..|||++.+|+|||||||+|+|+...
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 34667999999999999999999999999999999999999999999999999998754
No 36
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.75 E-value=4.9e-19 Score=121.68 Aligned_cols=54 Identities=19% Similarity=0.356 Sum_probs=51.1
Q ss_pred eecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHH
Q psy4078 87 TVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKR 140 (269)
Q Consensus 87 t~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~ 140 (269)
|.|+.+|+.+||..|..++||+..++++||..+||++.+|+|||||||+|+||+
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 679999999999999999999999999999999999999999999999999985
No 37
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.75 E-value=5.6e-19 Score=127.84 Aligned_cols=59 Identities=17% Similarity=0.298 Sum_probs=56.0
Q ss_pred ccceeecchhhhhhhhhhccc-CCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHH
Q psy4078 83 TRVRTVLNEKQLHTLRTCYNA-NPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRA 141 (269)
Q Consensus 83 rr~Rt~~t~~Ql~~Le~~F~~-~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~ 141 (269)
++.|+.|+.+|+.+||..|.. ++||+..++++||..+||++.+|+|||||||+|+||.+
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 467899999999999999995 99999999999999999999999999999999999875
No 38
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.74 E-value=6.9e-19 Score=126.99 Aligned_cols=58 Identities=17% Similarity=0.326 Sum_probs=55.5
Q ss_pred cceeecchhhhhhhhhhccc-CCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHH
Q psy4078 84 RVRTVLNEKQLHTLRTCYNA-NPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRA 141 (269)
Q Consensus 84 r~Rt~~t~~Ql~~Le~~F~~-~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~ 141 (269)
+.|+.|+.+|+.+||..|.. ++||+..++++||..|||++.+|+|||||||+|+||..
T Consensus 3 k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 3 EGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 57899999999999999996 99999999999999999999999999999999999874
No 39
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=7e-19 Score=133.71 Aligned_cols=66 Identities=23% Similarity=0.393 Sum_probs=61.5
Q ss_pred CCCCCCccceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhC---------------CCchhhhhhhcchhhhHHHHH
Q psy4078 77 GGDGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTN---------------LSPRVIRVWFQNKRCKDKKRA 141 (269)
Q Consensus 77 ~~~~k~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lg---------------L~~~~V~vWFqNRRak~kk~~ 141 (269)
....+.+|.|+.|+.+|+.+||.+|+.++||+..++++||..|| |++.+|++||||||+|+|++.
T Consensus 2 ~~~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~ 81 (95)
T 2cuf_A 2 SSGSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRA 81 (95)
T ss_dssp CSSSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHh
Confidence 34567788999999999999999999999999999999999999 999999999999999999885
Q ss_pred H
Q psy4078 142 L 142 (269)
Q Consensus 142 ~ 142 (269)
.
T Consensus 82 ~ 82 (95)
T 2cuf_A 82 N 82 (95)
T ss_dssp H
T ss_pred h
Confidence 4
No 40
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.74 E-value=5e-19 Score=128.49 Aligned_cols=66 Identities=36% Similarity=0.573 Sum_probs=61.0
Q ss_pred CCCCCCccceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHHH
Q psy4078 77 GGDGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRAL 142 (269)
Q Consensus 77 ~~~~k~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~~ 142 (269)
...++++|.|+.|+.+|+.+||..|..++||+..++++||..|||++.+|+|||||||+|+||+++
T Consensus 4 ~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 4 SNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp CCCSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHh
Confidence 345567889999999999999999999999999999999999999999999999999999998643
No 41
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=8.1e-19 Score=123.40 Aligned_cols=59 Identities=24% Similarity=0.300 Sum_probs=55.6
Q ss_pred CCCCCccceeecchhhhhhhhhhccc-CCCCChHHHHHHHHHhCCCchhhhhhhcchhhh
Q psy4078 78 GDGKPTRVRTVLNEKQLHTLRTCYNA-NPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCK 136 (269)
Q Consensus 78 ~~~k~rr~Rt~~t~~Ql~~Le~~F~~-~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak 136 (269)
..++++|.||.|+.+|+.+|+.+|+. ++||+...|+.||.+|||++++|+|||||||--
T Consensus 3 ~~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~ 62 (71)
T 1wi3_A 3 SGSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYH 62 (71)
T ss_dssp CCCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceee
Confidence 45578899999999999999999999 999999999999999999999999999999864
No 42
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.74 E-value=6.2e-19 Score=121.61 Aligned_cols=57 Identities=25% Similarity=0.485 Sum_probs=54.4
Q ss_pred CccceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHH
Q psy4078 82 PTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDK 138 (269)
Q Consensus 82 ~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~k 138 (269)
+++.|+.|+.+|+.+||..|..++||+..++++||..+||++.+|++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 357899999999999999999999999999999999999999999999999999975
No 43
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.74 E-value=6.7e-19 Score=125.28 Aligned_cols=59 Identities=32% Similarity=0.525 Sum_probs=56.7
Q ss_pred ccceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHH
Q psy4078 83 TRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRA 141 (269)
Q Consensus 83 rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~ 141 (269)
+|.|+.|+.+|+.+||..|..++||+..++++||..+||++.+|++||||||+|+|+..
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~ 60 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSH 60 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSC
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhc
Confidence 57899999999999999999999999999999999999999999999999999999864
No 44
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=7.9e-19 Score=133.91 Aligned_cols=63 Identities=29% Similarity=0.518 Sum_probs=56.3
Q ss_pred CCCccceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHHH
Q psy4078 80 GKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRAL 142 (269)
Q Consensus 80 ~k~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~~ 142 (269)
.+.++.|+.|+.+|+.+||.+|..++||+..++++||..|||++.+|+|||||||+|+||.+.
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 456788999999999999999999999999999999999999999999999999999998753
No 45
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.3e-18 Score=126.59 Aligned_cols=58 Identities=24% Similarity=0.354 Sum_probs=55.0
Q ss_pred cceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHH
Q psy4078 84 RVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRA 141 (269)
Q Consensus 84 r~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~ 141 (269)
++|+.||.+|+.+||..|..++||+..++++||..|||++.+|+|||||||+|+|+++
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSS
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhh
Confidence 4567799999999999999999999999999999999999999999999999999874
No 46
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=1.9e-18 Score=125.00 Aligned_cols=64 Identities=23% Similarity=0.329 Sum_probs=59.3
Q ss_pred CCCCCccceeecchhhhhhhhhhccc---CCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHH
Q psy4078 78 GDGKPTRVRTVLNEKQLHTLRTCYNA---NPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRA 141 (269)
Q Consensus 78 ~~~k~rr~Rt~~t~~Ql~~Le~~F~~---~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~ 141 (269)
...+.++.|+.|+.+|+.+|+.+|.. ++||+..++++||..+||++.+|+|||||||+|+|+..
T Consensus 3 ~~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 3 SGSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp CCSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccc
Confidence 44567788999999999999999976 99999999999999999999999999999999999864
No 47
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.72 E-value=1e-18 Score=133.11 Aligned_cols=69 Identities=20% Similarity=0.244 Sum_probs=59.6
Q ss_pred CCCCccceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHHHHHHHH
Q psy4078 79 DGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRALAMKQQ 147 (269)
Q Consensus 79 ~~k~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~~~~~~~ 147 (269)
....+|.|+.|+.+|+.+||..|..++||+..++++||..|||++.+|+|||||||+|+||....-.++
T Consensus 22 ~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk~~~~ 90 (96)
T 3nar_A 22 KSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLKWYYY 90 (96)
T ss_dssp -----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcccHHHH
Confidence 344567899999999999999999999999999999999999999999999999999999987654443
No 48
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=4.8e-18 Score=129.90 Aligned_cols=65 Identities=23% Similarity=0.327 Sum_probs=60.4
Q ss_pred CCCCccceeecchhhhhhhhhhcccCCCCChHHHHHHHHHh---------------------CCCchhhhhhhcchhhhH
Q psy4078 79 DGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMT---------------------NLSPRVIRVWFQNKRCKD 137 (269)
Q Consensus 79 ~~k~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~l---------------------gL~~~~V~vWFqNRRak~ 137 (269)
.++.+|.|+.|+..|+.+||++|+.++||+..+|++||..| +|++.+|+|||||||+|+
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 45678899999999999999999999999999999999999 799999999999999999
Q ss_pred HHHHHH
Q psy4078 138 KKRALA 143 (269)
Q Consensus 138 kk~~~~ 143 (269)
|++...
T Consensus 83 kr~~~~ 88 (102)
T 2da6_A 83 AFRQKL 88 (102)
T ss_dssp HHHHHH
T ss_pred HHhhHh
Confidence 988653
No 49
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.72 E-value=1.1e-18 Score=126.57 Aligned_cols=61 Identities=23% Similarity=0.409 Sum_probs=57.5
Q ss_pred CCccceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHH
Q psy4078 81 KPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRA 141 (269)
Q Consensus 81 k~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~ 141 (269)
..++.|+.|+.+|+.+||..|..++||+..++++||..+||++.+|+|||||||+|+||.+
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhC
Confidence 3467899999999999999999999999999999999999999999999999999999863
No 50
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.6e-18 Score=126.46 Aligned_cols=61 Identities=25% Similarity=0.412 Sum_probs=57.0
Q ss_pred CCccceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHH
Q psy4078 81 KPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRA 141 (269)
Q Consensus 81 k~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~ 141 (269)
.+.+.|+.||.+|+.+||.+|..++||+..++++||..|||++.+|+|||||||+|+||..
T Consensus 7 ~~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 7 GASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 3445689999999999999999999999999999999999999999999999999999864
No 51
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.71 E-value=2.1e-18 Score=128.85 Aligned_cols=61 Identities=28% Similarity=0.431 Sum_probs=57.3
Q ss_pred ccceeecchhhhhhhhhhc---ccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHHHH
Q psy4078 83 TRVRTVLNEKQLHTLRTCY---NANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRALA 143 (269)
Q Consensus 83 rr~Rt~~t~~Ql~~Le~~F---~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~~~ 143 (269)
||.|+.|+.+|+.+|+.+| ..++||+..++++||..+||++.+|++||||||+|+|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 5789999999999999999 899999999999999999999999999999999999998654
No 52
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.71 E-value=2.6e-18 Score=121.12 Aligned_cols=58 Identities=26% Similarity=0.405 Sum_probs=55.5
Q ss_pred Cccceeecchhhhhhhhhhc---ccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHH
Q psy4078 82 PTRVRTVLNEKQLHTLRTCY---NANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKK 139 (269)
Q Consensus 82 ~rr~Rt~~t~~Ql~~Le~~F---~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk 139 (269)
.++.|+.|+.+|+.+|+.+| ..++||+..++++||..+||++.+|++||||||+|+||
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 46788999999999999999 99999999999999999999999999999999999986
No 53
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.70 E-value=4.2e-18 Score=123.00 Aligned_cols=58 Identities=24% Similarity=0.375 Sum_probs=53.8
Q ss_pred ccceeecchhhhhhhhhhc-ccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHH
Q psy4078 83 TRVRTVLNEKQLHTLRTCY-NANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKR 140 (269)
Q Consensus 83 rr~Rt~~t~~Ql~~Le~~F-~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~ 140 (269)
.+.|.+++.+|+.+||.+| ..++||+..+|++||..|||++++|+|||||||+|+|+.
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 3456778999999999999 999999999999999999999999999999999999863
No 54
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.70 E-value=7.3e-18 Score=121.86 Aligned_cols=60 Identities=28% Similarity=0.440 Sum_probs=57.1
Q ss_pred ccceeecchhhhhhhhhhc---ccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHHH
Q psy4078 83 TRVRTVLNEKQLHTLRTCY---NANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRAL 142 (269)
Q Consensus 83 rr~Rt~~t~~Ql~~Le~~F---~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~~ 142 (269)
+|.|+.|+.+|+.+|+.+| ..++||+..+++.||..+||++.+|++||||||+|+|+...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 64 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccc
Confidence 5789999999999999999 99999999999999999999999999999999999998754
No 55
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.70 E-value=8.2e-18 Score=124.74 Aligned_cols=64 Identities=25% Similarity=0.271 Sum_probs=58.6
Q ss_pred CCCCCccceeecchhhhhhhhhhccc---CCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHH
Q psy4078 78 GDGKPTRVRTVLNEKQLHTLRTCYNA---NPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRA 141 (269)
Q Consensus 78 ~~~k~rr~Rt~~t~~Ql~~Le~~F~~---~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~ 141 (269)
...+.++.|+.|+.+|+.+|+.+|.. ++||+..++++||..+||++.+|+|||||||+|+|+..
T Consensus 3 ~~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~ 69 (83)
T 2dmn_A 3 SGSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDM 69 (83)
T ss_dssp CCCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHH
Confidence 34566788999999999999999987 69999999999999999999999999999999998864
No 56
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.69 E-value=9.2e-18 Score=118.09 Aligned_cols=53 Identities=23% Similarity=0.444 Sum_probs=50.4
Q ss_pred cchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHH
Q psy4078 89 LNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRA 141 (269)
Q Consensus 89 ~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~ 141 (269)
-+.+|+.+||..|..++||+..++++||..|||++++|++||||||+|+|+..
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 36799999999999999999999999999999999999999999999999764
No 57
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.69 E-value=7.4e-18 Score=117.23 Aligned_cols=54 Identities=28% Similarity=0.428 Sum_probs=52.5
Q ss_pred eeecchhhhhhhhhhccc---CCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHH
Q psy4078 86 RTVLNEKQLHTLRTCYNA---NPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKK 139 (269)
Q Consensus 86 Rt~~t~~Ql~~Le~~F~~---~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk 139 (269)
|+.|+.+|+.+||.+|.. ++||+..++++||..+||++.+|++||||||+|+|+
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 678999999999999999 999999999999999999999999999999999986
No 58
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=1.6e-17 Score=124.56 Aligned_cols=54 Identities=20% Similarity=0.290 Sum_probs=52.5
Q ss_pred ecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHH
Q psy4078 88 VLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRA 141 (269)
Q Consensus 88 ~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~ 141 (269)
.||.+|+.+||+.|..++||+..+|++||..|||++++|+|||||||+|||+++
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHH
Confidence 799999999999999999999999999999999999999999999999999875
No 59
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.67 E-value=1.3e-17 Score=124.61 Aligned_cols=59 Identities=25% Similarity=0.370 Sum_probs=55.7
Q ss_pred CCCccceeecchhhhhhhhhhccc---CCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHH
Q psy4078 80 GKPTRVRTVLNEKQLHTLRTCYNA---NPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDK 138 (269)
Q Consensus 80 ~k~rr~Rt~~t~~Ql~~Le~~F~~---~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~k 138 (269)
.++++.|+.|+.+|+.+|+.+|.. ++||+..++++||..+||++.+|++||||||+|+|
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 345667999999999999999999 99999999999999999999999999999999987
No 60
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.66 E-value=2.5e-17 Score=135.34 Aligned_cols=63 Identities=27% Similarity=0.501 Sum_probs=59.1
Q ss_pred CCCCCCccceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHH
Q psy4078 77 GGDGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKK 139 (269)
Q Consensus 77 ~~~~k~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk 139 (269)
....+++|.|+.|+.+|+.+||.+|..++||+..++++||..+||++++|+|||||||+|+||
T Consensus 88 ~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 88 GEPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp SSCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 344567789999999999999999999999999999999999999999999999999999986
No 61
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.66 E-value=1.7e-17 Score=135.56 Aligned_cols=63 Identities=24% Similarity=0.473 Sum_probs=55.6
Q ss_pred CCCCCccceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHH
Q psy4078 78 GDGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKR 140 (269)
Q Consensus 78 ~~~k~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~ 140 (269)
...+++|.|+.|+.+|+.+||.+|..++||+..+|++||..+||++++|+|||||||+|+||+
T Consensus 83 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 83 ANERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 345667889999999999999999999999999999999999999999999999999999974
No 62
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3e-17 Score=123.28 Aligned_cols=55 Identities=22% Similarity=0.292 Sum_probs=52.3
Q ss_pred eecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHH
Q psy4078 87 TVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRA 141 (269)
Q Consensus 87 t~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~ 141 (269)
..||.+|+.+||..|..++||+..++++||..|||++++|+|||||||+|+|+++
T Consensus 18 k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 18 KEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHh
Confidence 3489999999999999999999999999999999999999999999999998764
No 63
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.65 E-value=1.5e-17 Score=127.18 Aligned_cols=64 Identities=23% Similarity=0.304 Sum_probs=54.0
Q ss_pred CCCCccceeecchhhhhhhhhhcccCCCCChHHHHHHHHH------------------hC---CCchhhhhhhcchhhhH
Q psy4078 79 DGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEM------------------TN---LSPRVIRVWFQNKRCKD 137 (269)
Q Consensus 79 ~~k~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~------------------lg---L~~~~V~vWFqNRRak~ 137 (269)
.++.+|.|+.|+..|+.+||..|+.++||+..+|++||.. || |++.+|+|||||||+++
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~ 85 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 85 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHH
Confidence 4567789999999999999999999999999999999999 88 99999999999999999
Q ss_pred HHHHH
Q psy4078 138 KKRAL 142 (269)
Q Consensus 138 kk~~~ 142 (269)
|++..
T Consensus 86 k~k~~ 90 (99)
T 1lfb_A 86 AFRHK 90 (99)
T ss_dssp SCCC-
T ss_pred HHhch
Confidence 87653
No 64
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.65 E-value=2.8e-17 Score=121.85 Aligned_cols=59 Identities=24% Similarity=0.366 Sum_probs=54.6
Q ss_pred cceeecchhhhhhhhhhccc---CCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHHH
Q psy4078 84 RVRTVLNEKQLHTLRTCYNA---NPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRAL 142 (269)
Q Consensus 84 r~Rt~~t~~Ql~~Le~~F~~---~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~~ 142 (269)
+.|++|+.+|+.+|+.+|.. ++||+..++++||..+||++.+|++||||||+|+|+...
T Consensus 4 krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 4 YRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccccc
Confidence 45667999999999999999 999999999999999999999999999999999998643
No 65
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.65 E-value=2.2e-17 Score=136.97 Aligned_cols=61 Identities=28% Similarity=0.476 Sum_probs=54.8
Q ss_pred CCCccceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHH
Q psy4078 80 GKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKR 140 (269)
Q Consensus 80 ~k~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~ 140 (269)
.++||.|+.|+..|+.+||.+|..++||+..+|++||..+||++++|+|||||||+|+||.
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 4678899999999999999999999999999999999999999999999999999999974
No 66
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.65 E-value=2.1e-17 Score=137.58 Aligned_cols=63 Identities=29% Similarity=0.492 Sum_probs=51.8
Q ss_pred CCCCccceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHH
Q psy4078 79 DGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRA 141 (269)
Q Consensus 79 ~~k~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~ 141 (269)
..+++|.|+.|+..|+.+||.+|..++||+..+|++||..+||++++|+|||||||+|+||..
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 158 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMT 158 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSC
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhcc
Confidence 456778999999999999999999999999999999999999999999999999999999864
No 67
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.65 E-value=2.3e-17 Score=116.03 Aligned_cols=49 Identities=22% Similarity=0.409 Sum_probs=46.1
Q ss_pred hhhhhhhhhhc-ccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHH
Q psy4078 91 EKQLHTLRTCY-NANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKK 139 (269)
Q Consensus 91 ~~Ql~~Le~~F-~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk 139 (269)
..|+.+||++| ..++||+..+|++||.+|||+++||+|||||||+|+|+
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 46899999999 67999999999999999999999999999999999985
No 68
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=2.5e-17 Score=116.23 Aligned_cols=54 Identities=20% Similarity=0.361 Sum_probs=50.3
Q ss_pred eeecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHH
Q psy4078 86 RTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKK 139 (269)
Q Consensus 86 Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk 139 (269)
+..++.+|+.+||.+|..++||+..+|++||..|||++++|+|||||||+|.++
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 345678999999999999999999999999999999999999999999998765
No 69
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.65 E-value=2.4e-17 Score=117.95 Aligned_cols=55 Identities=22% Similarity=0.437 Sum_probs=52.0
Q ss_pred eecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHH
Q psy4078 87 TVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRA 141 (269)
Q Consensus 87 t~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~ 141 (269)
..++..|+.+||..|..++||+..+|++||..+||++++|+|||||||+|+||++
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~ 63 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQ 63 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhh
Confidence 3578999999999999999999999999999999999999999999999999864
No 70
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.64 E-value=8.1e-17 Score=132.84 Aligned_cols=61 Identities=28% Similarity=0.506 Sum_probs=57.6
Q ss_pred CCCccceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHH
Q psy4078 80 GKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKR 140 (269)
Q Consensus 80 ~k~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~ 140 (269)
.+++|.|+.|+..|+.+||..|..++||+..++++||..+||++++|+|||||||+|+||.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 4667889999999999999999999999999999999999999999999999999999974
No 71
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.60 E-value=1.3e-16 Score=132.62 Aligned_cols=63 Identities=21% Similarity=0.360 Sum_probs=55.0
Q ss_pred CCCCccceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHH
Q psy4078 79 DGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRA 141 (269)
Q Consensus 79 ~~k~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~ 141 (269)
..+.||.|+.|+.+|+.+|+..|+.++||+..+|++||..|||++.+|+|||||||+|+|+..
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 446688999999999999999999999999999999999999999999999999999999764
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.56 E-value=1.3e-15 Score=108.34 Aligned_cols=56 Identities=21% Similarity=0.334 Sum_probs=50.5
Q ss_pred eecchhhhhhhhhhcc---cCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHHH
Q psy4078 87 TVLNEKQLHTLRTCYN---ANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRAL 142 (269)
Q Consensus 87 t~~t~~Ql~~Le~~F~---~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~~ 142 (269)
..|+.+|+.+|+.+|. .++||+..++++||..+||++.+|++||||||+|+|+...
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 61 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMI 61 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHH
Confidence 3689999999999999 9999999999999999999999999999999999998654
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.47 E-value=3.6e-15 Score=126.93 Aligned_cols=61 Identities=25% Similarity=0.331 Sum_probs=53.8
Q ss_pred CCCCccceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhC---------------------CCchhhhhhhcchhhhH
Q psy4078 79 DGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTN---------------------LSPRVIRVWFQNKRCKD 137 (269)
Q Consensus 79 ~~k~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lg---------------------L~~~~V~vWFqNRRak~ 137 (269)
.++.||.|+.|+..|+.+|+++|+.++||+..+|++||..|+ |++.+|++||||||+|+
T Consensus 112 ~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~ 191 (194)
T 1ic8_A 112 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 191 (194)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHC
T ss_pred cccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhh
Confidence 356788999999999999999999999999999999999999 99999999999999998
Q ss_pred HH
Q psy4078 138 KK 139 (269)
Q Consensus 138 kk 139 (269)
|.
T Consensus 192 k~ 193 (194)
T 1ic8_A 192 AF 193 (194)
T ss_dssp C-
T ss_pred hc
Confidence 64
No 74
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=1.5e-14 Score=102.36 Aligned_cols=45 Identities=16% Similarity=0.437 Sum_probs=43.6
Q ss_pred hhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhh
Q psy4078 91 EKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRC 135 (269)
Q Consensus 91 ~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRa 135 (269)
++|+.+|+.+|..|++|+..++..||..+||+.++|+|||||||+
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa 58 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKV 58 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhccc
Confidence 578999999999999999999999999999999999999999997
No 75
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.42 E-value=8.8e-14 Score=103.70 Aligned_cols=57 Identities=26% Similarity=0.331 Sum_probs=52.5
Q ss_pred eecchhhhhhhhhhccc---CCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHHHH
Q psy4078 87 TVLNEKQLHTLRTCYNA---NPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRALA 143 (269)
Q Consensus 87 t~~t~~Ql~~Le~~F~~---~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~~~ 143 (269)
..|+.+++.+|+.+|.. ++||+..++++||.++||++.||++||+|+|.|+++...+
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~ 69 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLR 69 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHH
Confidence 45889999999999977 9999999999999999999999999999999999987543
No 76
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.38 E-value=8.1e-14 Score=120.07 Aligned_cols=60 Identities=25% Similarity=0.373 Sum_probs=53.5
Q ss_pred CCCCCccceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhC---------------------CCchhhhhhhcchhhh
Q psy4078 78 GDGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTN---------------------LSPRVIRVWFQNKRCK 136 (269)
Q Consensus 78 ~~~k~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lg---------------------L~~~~V~vWFqNRRak 136 (269)
..++.||.|+.|+..|+.+|+++|+.++||+..+|++||..|| |++.+|++||||||++
T Consensus 138 ~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~ 217 (221)
T 2h8r_A 138 TNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 217 (221)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTT
T ss_pred ccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhh
Confidence 3456788999999999999999999999999999999999988 8999999999999987
Q ss_pred H
Q psy4078 137 D 137 (269)
Q Consensus 137 ~ 137 (269)
.
T Consensus 218 ~ 218 (221)
T 2h8r_A 218 E 218 (221)
T ss_dssp C
T ss_pred h
Confidence 4
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.26 E-value=6.5e-13 Score=123.60 Aligned_cols=56 Identities=23% Similarity=0.441 Sum_probs=53.4
Q ss_pred ccceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHH
Q psy4078 83 TRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDK 138 (269)
Q Consensus 83 rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~k 138 (269)
++.|+.|+..|+..||+.|+.++||+..+|++||.+|||+++||+|||||||+|+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 46688899999999999999999999999999999999999999999999999976
No 78
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=98.90 E-value=7.6e-10 Score=81.05 Aligned_cols=57 Identities=16% Similarity=0.193 Sum_probs=51.3
Q ss_pred CCCCCcccccCCHHHHHHHHHhhCC-----CCCCChhhHHHHHHhhhcccccccccCCCCCCC
Q psy4078 25 DGKPTRVRTVLNEKQLHTLRTCYNA-----NPRPDALMKEQLVEMTNLFLGRVRKVSGGDGKP 82 (269)
Q Consensus 25 ~~~~~r~Rt~~t~~Ql~~L~~~F~~-----n~~P~~~~re~La~~~gls~~~i~~~~~~~~k~ 82 (269)
..+.+|.||+||.+|+++|+ .|.. ++||+..++++|+..+||.+.+|+.++.+.+.+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k 75 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNS 75 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCC
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccC
Confidence 34678999999999999999 7999 999999999999999999999999988765543
No 79
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=98.90 E-value=4.6e-10 Score=82.20 Aligned_cols=57 Identities=14% Similarity=0.098 Sum_probs=51.5
Q ss_pred CCCCCcccccCCHHHHHHHHHhhCC----CCCCChhhHHHHHHhhhcccccccccCCCCCC
Q psy4078 25 DGKPTRVRTVLNEKQLHTLRTCYNA----NPRPDALMKEQLVEMTNLFLGRVRKVSGGDGK 81 (269)
Q Consensus 25 ~~~~~r~Rt~~t~~Ql~~L~~~F~~----n~~P~~~~re~La~~~gls~~~i~~~~~~~~k 81 (269)
..+.+|.||+||.+|+++|+..|.. ++||+..++++|+..+||.+.+|+.|+.+.+.
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRa 74 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKH 74 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSS
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCc
Confidence 3477899999999999999999999 99999999999999999999999888765443
No 80
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.89 E-value=4.4e-10 Score=79.00 Aligned_cols=53 Identities=19% Similarity=0.137 Sum_probs=49.3
Q ss_pred CCCCCcccccCCHHHHHHHHHhhCC-CCCCChhhHHHHHHhhhcccccccccCC
Q psy4078 25 DGKPTRVRTVLNEKQLHTLRTCYNA-NPRPDALMKEQLVEMTNLFLGRVRKVSG 77 (269)
Q Consensus 25 ~~~~~r~Rt~~t~~Ql~~L~~~F~~-n~~P~~~~re~La~~~gls~~~i~~~~~ 77 (269)
.+..+|.||+|+.+||.+|+.+|.. +.||+.+.+++|+..+||++.+|+.|+.
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQ 57 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQ 57 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhc
Confidence 4478999999999999999999999 9999999999999999999999977654
No 81
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=9.9e-10 Score=80.26 Aligned_cols=55 Identities=24% Similarity=0.155 Sum_probs=50.6
Q ss_pred CCCCCCcccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCC
Q psy4078 24 GDGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGG 78 (269)
Q Consensus 24 ~~~~~~r~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~ 78 (269)
...+.+|.|++||.+|+.+|+.+|..++||+..++++|+..+||++.+|+.|+.+
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqN 67 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQN 67 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHH
Confidence 3457789999999999999999999999999999999999999999999887754
No 82
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=98.82 E-value=1.7e-09 Score=78.83 Aligned_cols=54 Identities=20% Similarity=0.228 Sum_probs=50.0
Q ss_pred CCCCcccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCCC
Q psy4078 26 GKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGGD 79 (269)
Q Consensus 26 ~~~~r~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~~ 79 (269)
.+.+|.||+||.+|+++|+.+|..++||+..++++|+..+||++.+|+.|+.+.
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNr 68 (80)
T 2da3_A 15 QRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNT 68 (80)
T ss_dssp CCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHH
Confidence 467899999999999999999999999999999999999999999998877543
No 83
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.81 E-value=7.2e-10 Score=78.92 Aligned_cols=53 Identities=15% Similarity=0.115 Sum_probs=49.4
Q ss_pred CCCCcccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCC
Q psy4078 26 GKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGG 78 (269)
Q Consensus 26 ~~~~r~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~ 78 (269)
.+.+|.|++||.+|+.+|+.+|..++||+..++++|+..+||++.+|+.|+.+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 57 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQN 57 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999887754
No 84
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.78 E-value=6e-10 Score=69.24 Aligned_cols=20 Identities=55% Similarity=0.968 Sum_probs=18.2
Q ss_pred hhhhhhhcchhhhHHHHHHH
Q psy4078 124 RVIRVWFQNKRCKDKKRALA 143 (269)
Q Consensus 124 ~~V~vWFqNRRak~kk~~~~ 143 (269)
+||+|||||||+||||++..
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~ 20 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFN 20 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHH
T ss_pred CCceeccHHHHHHHHHHhHH
Confidence 58999999999999999865
No 85
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.78 E-value=6.8e-10 Score=79.06 Aligned_cols=53 Identities=17% Similarity=0.101 Sum_probs=49.4
Q ss_pred CCCCcccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCC
Q psy4078 26 GKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGG 78 (269)
Q Consensus 26 ~~~~r~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~ 78 (269)
.+.+|.|++||.+|+.+|+..|..++||+..++++|+..+||++.+|+.|+.+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqN 57 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQN 57 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHh
Confidence 46788999999999999999999999999999999999999999999887754
No 86
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=98.76 E-value=1.5e-09 Score=79.97 Aligned_cols=56 Identities=20% Similarity=0.185 Sum_probs=51.0
Q ss_pred CCCCCCcccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCCC
Q psy4078 24 GDGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGGD 79 (269)
Q Consensus 24 ~~~~~~r~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~~ 79 (269)
...+.+|.||+|+.+|+.+|+.+|..++||+..++++||..+||++.+|+.|+.+.
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNR 73 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQ 73 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34577899999999999999999999999999999999999999999998887543
No 87
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=98.73 E-value=7.8e-10 Score=78.66 Aligned_cols=54 Identities=24% Similarity=0.207 Sum_probs=49.7
Q ss_pred CCCCCcccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCC
Q psy4078 25 DGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGG 78 (269)
Q Consensus 25 ~~~~~r~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~ 78 (269)
.++.+|.|++|+.+|+.+|+.+|..++||+..++++|+..+||++.+|+.|+.+
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqN 57 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQN 57 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHh
Confidence 346788999999999999999999999999999999999999999999887654
No 88
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=98.72 E-value=8.3e-10 Score=77.66 Aligned_cols=53 Identities=74% Similarity=0.944 Sum_probs=49.0
Q ss_pred CCCcccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCCC
Q psy4078 27 KPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGGD 79 (269)
Q Consensus 27 ~~~r~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~~ 79 (269)
+.+|.|++||.+|+.+|+.+|..++||+..++++|+..+|+++.+|+.|+.+.
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNr 54 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNK 54 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHH
Confidence 46789999999999999999999999999999999999999999998877543
No 89
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=4.3e-09 Score=74.80 Aligned_cols=53 Identities=25% Similarity=0.314 Sum_probs=49.1
Q ss_pred CCCCcccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCC
Q psy4078 26 GKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGG 78 (269)
Q Consensus 26 ~~~~r~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~ 78 (269)
+..+|.|++||.+|+.+|+..|..++||+..++++|+..+||++.+|+.|+.+
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqN 57 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKN 57 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehcccc
Confidence 36778999999999999999999999999999999999999999999887654
No 90
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.72 E-value=1.2e-09 Score=79.85 Aligned_cols=55 Identities=25% Similarity=0.299 Sum_probs=50.5
Q ss_pred CCCCcccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCCCC
Q psy4078 26 GKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGGDG 80 (269)
Q Consensus 26 ~~~~r~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~~~ 80 (269)
++.+|.|++||.+|+.+|+.+|..++||+..++++|+..+||++.+|+.|+.+.+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR 59 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRR 59 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHh
Confidence 4678899999999999999999999999999999999999999999988876543
No 91
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=98.71 E-value=9.9e-10 Score=76.30 Aligned_cols=53 Identities=19% Similarity=0.254 Sum_probs=44.3
Q ss_pred CCCcccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCCC
Q psy4078 27 KPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGGD 79 (269)
Q Consensus 27 ~~~r~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~~ 79 (269)
+.+|.|++||.+|+.+|+..|..++||+..++++||..+||++.+|+.|+.+.
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNr 54 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQ 54 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHh
Confidence 46789999999999999999999999999999999999999999998877543
No 92
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.71 E-value=8.5e-09 Score=75.24 Aligned_cols=55 Identities=20% Similarity=0.301 Sum_probs=50.4
Q ss_pred CCCCcccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCCCC
Q psy4078 26 GKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGGDG 80 (269)
Q Consensus 26 ~~~~r~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~~~ 80 (269)
...+|.|++||.+|+.+|+.+|..++||+..++++|+..+||++.+|+.|+.+.+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR 59 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRR 59 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHH
Confidence 3678899999999999999999999999999999999999999999988876543
No 93
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.69 E-value=1.6e-09 Score=77.94 Aligned_cols=56 Identities=30% Similarity=0.360 Sum_probs=50.9
Q ss_pred CCCCCcccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCCCC
Q psy4078 25 DGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGGDG 80 (269)
Q Consensus 25 ~~~~~r~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~~~ 80 (269)
.++.+|.|++|+.+|+.+|+..|..++||+..++++|+..+||++.+|+.|+.+.+
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR 61 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRR 61 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHH
Confidence 45678899999999999999999999999999999999999999999988876543
No 94
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=98.69 E-value=3.6e-09 Score=73.07 Aligned_cols=53 Identities=11% Similarity=0.088 Sum_probs=41.0
Q ss_pred CCCCCcccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCC
Q psy4078 25 DGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSG 77 (269)
Q Consensus 25 ~~~~~r~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~ 77 (269)
.++.+|.|+.|+.+|+.+|+.+|..++||+..++++|+..+||++.+|+.|+.
T Consensus 2 k~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFq 54 (61)
T 1akh_A 2 KEKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFI 54 (61)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999987654
No 95
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=98.69 E-value=5.7e-09 Score=74.11 Aligned_cols=53 Identities=19% Similarity=0.287 Sum_probs=49.2
Q ss_pred CCCCcccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCC
Q psy4078 26 GKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGG 78 (269)
Q Consensus 26 ~~~~r~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~ 78 (269)
.+.+|.|++||.+|+.+|+.+|..++||+..++++|+..+||++.+|+.|+.+
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqN 57 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRN 57 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhh
Confidence 36788999999999999999999999999999999999999999999887654
No 96
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.67 E-value=5.5e-09 Score=72.88 Aligned_cols=55 Identities=18% Similarity=0.238 Sum_probs=49.6
Q ss_pred CCCcccccCCHHHHHHHHHhh---CCCCCCChhhHHHHHHhhhcccccccccCCCCCC
Q psy4078 27 KPTRVRTVLNEKQLHTLRTCY---NANPRPDALMKEQLVEMTNLFLGRVRKVSGGDGK 81 (269)
Q Consensus 27 ~~~r~Rt~~t~~Ql~~L~~~F---~~n~~P~~~~re~La~~~gls~~~i~~~~~~~~k 81 (269)
..+|.|+.|+.+|+++|+.+| ..++||+..++++|+..+||++.+|..|+.+.+.
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~ 59 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRI 59 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 456789999999999999999 9999999999999999999999999888765443
No 97
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=98.67 E-value=1.2e-08 Score=73.90 Aligned_cols=55 Identities=13% Similarity=0.012 Sum_probs=50.4
Q ss_pred CCCCCCcccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCC
Q psy4078 24 GDGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGG 78 (269)
Q Consensus 24 ~~~~~~r~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~ 78 (269)
+.+..+|.|++||.+|+.+|+..|..++||+..++++|+..+||++.+|+.|+.+
T Consensus 9 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqN 63 (77)
T 1puf_A 9 HARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQN 63 (77)
T ss_dssp CCCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 3456788999999999999999999999999999999999999999999887754
No 98
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=98.66 E-value=1e-08 Score=74.32 Aligned_cols=55 Identities=16% Similarity=0.158 Sum_probs=50.4
Q ss_pred CCCCCcccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCCC
Q psy4078 25 DGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGGD 79 (269)
Q Consensus 25 ~~~~~r~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~~ 79 (269)
..+.+|.|++||.+|+.+|+..|..++||+..++++|+..+||++.+|+.|+.+.
T Consensus 6 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNR 60 (77)
T 1nk2_P 6 PNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNH 60 (77)
T ss_dssp SCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHh
Confidence 3467889999999999999999999999999999999999999999998887653
No 99
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=98.66 E-value=6.2e-09 Score=72.49 Aligned_cols=52 Identities=21% Similarity=0.132 Sum_probs=46.4
Q ss_pred CCCcccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCC
Q psy4078 27 KPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGG 78 (269)
Q Consensus 27 ~~~r~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~ 78 (269)
..+|.|++||.+|+.+|+..|..++||+..++++||..+||++.+|+.|+.+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqN 53 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQN 53 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHh
Confidence 4678999999999999999999999999999999999999999999877654
No 100
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=98.65 E-value=6e-09 Score=72.06 Aligned_cols=51 Identities=22% Similarity=0.212 Sum_probs=44.5
Q ss_pred CCcccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCC
Q psy4078 28 PTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGG 78 (269)
Q Consensus 28 ~~r~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~ 78 (269)
.+|.|+.||.+|+.+|+..|..|+||+..++++|+..+|+++.+|+.|+.+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 53 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKN 53 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhh
Confidence 578999999999999999999999999999999999999999999877654
No 101
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=6.9e-09 Score=75.69 Aligned_cols=55 Identities=18% Similarity=0.158 Sum_probs=50.8
Q ss_pred CCCCCcccccCCHHHHHHHHHhhCCC----CCCChhhHHHHHHhhhcccccccccCCCC
Q psy4078 25 DGKPTRVRTVLNEKQLHTLRTCYNAN----PRPDALMKEQLVEMTNLFLGRVRKVSGGD 79 (269)
Q Consensus 25 ~~~~~r~Rt~~t~~Ql~~L~~~F~~n----~~P~~~~re~La~~~gls~~~i~~~~~~~ 79 (269)
.++.+|.||+||.+|+.+|+.+|..+ +||+..++++|+..+||++.+|+.|+.+.
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNr 63 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNR 63 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHH
Confidence 45778999999999999999999999 99999999999999999999998887654
No 102
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.64 E-value=1e-08 Score=74.73 Aligned_cols=54 Identities=26% Similarity=0.306 Sum_probs=49.8
Q ss_pred CCCCcccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCCC
Q psy4078 26 GKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGGD 79 (269)
Q Consensus 26 ~~~~r~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~~ 79 (269)
.+.+|.|++||.+|+.+|+.+|..++||+..++++|+..+||++.+|+.|+.+.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNr 58 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNA 58 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHH
Confidence 367889999999999999999999999999999999999999999998877653
No 103
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=98.64 E-value=9.3e-09 Score=72.67 Aligned_cols=53 Identities=30% Similarity=0.369 Sum_probs=49.1
Q ss_pred CCCcccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCCC
Q psy4078 27 KPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGGD 79 (269)
Q Consensus 27 ~~~r~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~~ 79 (269)
+.+|.|+.||.+|+.+|+..|..++||+..++++|+..+||++.+|+.|+.+.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNr 54 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNR 54 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999998877543
No 104
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.64 E-value=1.1e-08 Score=72.60 Aligned_cols=52 Identities=12% Similarity=0.076 Sum_probs=48.4
Q ss_pred CCCcccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCC
Q psy4078 27 KPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGG 78 (269)
Q Consensus 27 ~~~r~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~ 78 (269)
..+|.|++||.+|+.+|+..|..++||+..++++|+..+||++.+|+.|+.+
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 57 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQN 57 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHh
Confidence 5677899999999999999999999999999999999999999999887754
No 105
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=98.63 E-value=1.3e-08 Score=72.97 Aligned_cols=53 Identities=19% Similarity=0.085 Sum_probs=49.2
Q ss_pred CCCCcccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCC
Q psy4078 26 GKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGG 78 (269)
Q Consensus 26 ~~~~r~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~ 78 (269)
.+.+|.|+.||.+|+.+|+..|..++||+..++++|+..+||++.+|+.|+.+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqN 57 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQN 57 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999887654
No 106
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=98.63 E-value=1.6e-08 Score=71.43 Aligned_cols=51 Identities=20% Similarity=0.144 Sum_probs=47.8
Q ss_pred CCcccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCC
Q psy4078 28 PTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGG 78 (269)
Q Consensus 28 ~~r~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~ 78 (269)
.+|.|++||.+|+.+|+..|..++||+..+++.||..+||++.+|+.|+.+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 52 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKN 52 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHH
Confidence 578999999999999999999999999999999999999999999887654
No 107
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=98.61 E-value=1e-08 Score=70.03 Aligned_cols=50 Identities=14% Similarity=0.098 Sum_probs=46.5
Q ss_pred CcccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCC
Q psy4078 29 TRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGG 78 (269)
Q Consensus 29 ~r~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~ 78 (269)
+|.|+.||.+|+.+|+..|..++||+..++++|+..+|+++.+|+.|..+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 50 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQN 50 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhH
Confidence 47899999999999999999999999999999999999999999877653
No 108
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=98.61 E-value=1.9e-08 Score=70.80 Aligned_cols=52 Identities=25% Similarity=0.312 Sum_probs=47.9
Q ss_pred CCcccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCCC
Q psy4078 28 PTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGGD 79 (269)
Q Consensus 28 ~~r~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~~ 79 (269)
.+|.|+.||.+|+.+|+..|..++||+..++++|+..+|+++.+|+.|+.+.
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNr 52 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNR 52 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CcCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhH
Confidence 3678999999999999999999999999999999999999999998877543
No 109
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=98.60 E-value=1.7e-08 Score=74.92 Aligned_cols=55 Identities=15% Similarity=0.119 Sum_probs=45.8
Q ss_pred CCCCCCcccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCC
Q psy4078 24 GDGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGG 78 (269)
Q Consensus 24 ~~~~~~r~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~ 78 (269)
.+++.+|.|++||.+|+.+|+..|..++||+..++++|+..+||++.+|+.|+.+
T Consensus 24 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqN 78 (88)
T 2r5y_A 24 ANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQN 78 (88)
T ss_dssp -------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHH
Confidence 3457789999999999999999999999999999999999999999999887654
No 110
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=98.59 E-value=1.3e-08 Score=70.14 Aligned_cols=50 Identities=18% Similarity=0.129 Sum_probs=46.1
Q ss_pred CcccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCC
Q psy4078 29 TRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGG 78 (269)
Q Consensus 29 ~r~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~ 78 (269)
+|.|+.||.+|+.+|+..|..++||+..++++|+..+||++.+|+.|+.+
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 51 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQN 51 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHH
Confidence 57899999999999999999999999999999999999999999877654
No 111
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=98.59 E-value=2.4e-09 Score=75.80 Aligned_cols=51 Identities=18% Similarity=0.194 Sum_probs=47.7
Q ss_pred CCcccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCC
Q psy4078 28 PTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGG 78 (269)
Q Consensus 28 ~~r~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~ 78 (269)
.+|.|++||.+|+.+|+..|..++||+..++++|+..+||++.+|+.|+.+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqN 52 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQN 52 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHH
Confidence 468899999999999999999999999999999999999999999887754
No 112
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=98.57 E-value=1.8e-08 Score=73.66 Aligned_cols=55 Identities=27% Similarity=0.376 Sum_probs=49.7
Q ss_pred CCCCCcccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCCC
Q psy4078 25 DGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGGD 79 (269)
Q Consensus 25 ~~~~~r~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~~ 79 (269)
.++.+|.|++|+.+|+.+|+.+|..++||+..++++|+..+||++.+|+.|+.+.
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNr 69 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNR 69 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 4577899999999999999999999999999999999999999999998887653
No 113
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=5.7e-09 Score=75.42 Aligned_cols=52 Identities=23% Similarity=0.238 Sum_probs=47.2
Q ss_pred CCCcccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCC
Q psy4078 27 KPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGG 78 (269)
Q Consensus 27 ~~~r~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~ 78 (269)
.+.+.|+.||.+|+.+|+..|..++||+..++++|+..+||++.+|+.|+.+
T Consensus 7 ~~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqN 58 (76)
T 2dn0_A 7 GASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSD 58 (76)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHH
Confidence 3445689999999999999999999999999999999999999999887654
No 114
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=98.55 E-value=4e-08 Score=73.79 Aligned_cols=55 Identities=13% Similarity=0.093 Sum_probs=50.6
Q ss_pred CCCCCcccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCCC
Q psy4078 25 DGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGGD 79 (269)
Q Consensus 25 ~~~~~r~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~~ 79 (269)
..+.+|.||+||.+|+.+|+..|..++||+..++++|+..+||++.+|+.|+.+.
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNR 68 (93)
T 3a01_A 14 PPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNR 68 (93)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhh
Confidence 3467889999999999999999999999999999999999999999998887654
No 115
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=98.55 E-value=1.9e-08 Score=71.10 Aligned_cols=51 Identities=12% Similarity=0.031 Sum_probs=47.5
Q ss_pred CCcccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCC
Q psy4078 28 PTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGG 78 (269)
Q Consensus 28 ~~r~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~ 78 (269)
.+|.|++||.+|+.+|+..|..++||+..++++|+..+||++.+|+.|+.+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqN 52 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQN 52 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHH
Confidence 468899999999999999999999999999999999999999999887654
No 116
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=98.54 E-value=1.9e-08 Score=73.62 Aligned_cols=55 Identities=13% Similarity=0.082 Sum_probs=45.3
Q ss_pred CCCCCcccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCCC
Q psy4078 25 DGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGGD 79 (269)
Q Consensus 25 ~~~~~r~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~~ 79 (269)
.+..+|.|++||.+|+.+|+..|..++||+..++++|+..+||++.+|+.|+.+.
T Consensus 17 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNR 71 (81)
T 1b8i_A 17 NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNR 71 (81)
T ss_dssp -------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHh
Confidence 3467889999999999999999999999999999999999999999998877543
No 117
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=98.54 E-value=3.9e-08 Score=66.89 Aligned_cols=50 Identities=16% Similarity=0.175 Sum_probs=46.2
Q ss_pred CCcccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCC
Q psy4078 28 PTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSG 77 (269)
Q Consensus 28 ~~r~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~ 77 (269)
.+|.|+.|+.+|+.+|+..|..++||+..++++|+..+|+++.+|+.|+.
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFq 51 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQ 51 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhH
Confidence 35788999999999999999999999999999999999999999977654
No 118
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.50 E-value=2.7e-08 Score=71.94 Aligned_cols=49 Identities=14% Similarity=0.085 Sum_probs=45.3
Q ss_pred ccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCCC
Q psy4078 31 VRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGGD 79 (269)
Q Consensus 31 ~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~~ 79 (269)
.|..||.+|+.+|++.|..|+||+..++++||+.+||++.+|+.|+.+.
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNr 54 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDT 54 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhh
Confidence 4567999999999999999999999999999999999999998888654
No 119
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.50 E-value=7.4e-09 Score=78.06 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=48.5
Q ss_pred CCCCcccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhh---------------cccccccccCCCC
Q psy4078 26 GKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTN---------------LFLGRVRKVSGGD 79 (269)
Q Consensus 26 ~~~~r~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~g---------------ls~~~i~~~~~~~ 79 (269)
.+.+|.|+.|+.+|+.+|+.+|..++||+..++++|++.++ +++.+|..|+.+.
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNR 73 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANR 73 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999 8888887776543
No 120
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=98.47 E-value=5.8e-08 Score=73.40 Aligned_cols=54 Identities=19% Similarity=0.219 Sum_probs=46.2
Q ss_pred CCCCcccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCCC
Q psy4078 26 GKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGGD 79 (269)
Q Consensus 26 ~~~~r~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~~ 79 (269)
+..+|.||+||.+|+.+|+..|..++||+..++++||..+||++.+|+.|+.+.
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNR 85 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNR 85 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHH
Confidence 467889999999999999999999999999999999999999999998877543
No 121
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.46 E-value=6.2e-08 Score=69.30 Aligned_cols=53 Identities=25% Similarity=0.226 Sum_probs=48.3
Q ss_pred CCCCcccccCCHHHHHHHHHhhCC---CCCCChhhHHHHHHhhhcccccccccCCC
Q psy4078 26 GKPTRVRTVLNEKQLHTLRTCYNA---NPRPDALMKEQLVEMTNLFLGRVRKVSGG 78 (269)
Q Consensus 26 ~~~~r~Rt~~t~~Ql~~L~~~F~~---n~~P~~~~re~La~~~gls~~~i~~~~~~ 78 (269)
++.+|.|++|+.+|+.+|+.+|.. ++||+..++++|+..+||++.+|..|+.+
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqN 60 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFIN 60 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHH
Confidence 467789999999999999999965 99999999999999999999999887654
No 122
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.46 E-value=1.6e-08 Score=72.56 Aligned_cols=52 Identities=23% Similarity=0.296 Sum_probs=48.1
Q ss_pred CCCcccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCC
Q psy4078 27 KPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGG 78 (269)
Q Consensus 27 ~~~r~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~ 78 (269)
..++.|+.||.+|+.+|+..|..++||+..++++|+..+|+++.+|+.|+..
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 56 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSD 56 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChh
Confidence 4567899999999999999999999999999999999999999999887654
No 123
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=98.45 E-value=8.4e-09 Score=71.04 Aligned_cols=48 Identities=19% Similarity=0.257 Sum_probs=42.8
Q ss_pred ccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCC
Q psy4078 31 VRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGG 78 (269)
Q Consensus 31 ~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~ 78 (269)
.|+.||.+|+.+|+..|..++||+..++++|+..+|+++.+|+.|+.+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 49 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQN 49 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhh
Confidence 479999999999999999999999999999999999999999887654
No 124
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=98.45 E-value=2.3e-08 Score=76.03 Aligned_cols=54 Identities=22% Similarity=0.153 Sum_probs=43.4
Q ss_pred CCCCcccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHh------------------hh---cccccccccCCCC
Q psy4078 26 GKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEM------------------TN---LFLGRVRKVSGGD 79 (269)
Q Consensus 26 ~~~~r~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~------------------~g---ls~~~i~~~~~~~ 79 (269)
.+.+|.|+.|+.+|+.+|+..|..++||+...|++|+.. +| +++.+|..|+.+.
T Consensus 7 ~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNR 81 (99)
T 1lfb_A 7 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANR 81 (99)
T ss_dssp ------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHH
Confidence 467899999999999999999999999999999999999 77 8888887776543
No 125
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=98.44 E-value=9.5e-08 Score=68.31 Aligned_cols=52 Identities=23% Similarity=0.360 Sum_probs=47.8
Q ss_pred CCcccccCCHHHHHHHHHhh---CCCCCCChhhHHHHHHhhhcccccccccCCCC
Q psy4078 28 PTRVRTVLNEKQLHTLRTCY---NANPRPDALMKEQLVEMTNLFLGRVRKVSGGD 79 (269)
Q Consensus 28 ~~r~Rt~~t~~Ql~~L~~~F---~~n~~P~~~~re~La~~~gls~~~i~~~~~~~ 79 (269)
.+|.|+.|+.+|+.+|+.+| ..++||+..++++|+..+||++.+|..|+.+.
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNr 55 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNK 55 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 36789999999999999999 99999999999999999999999998877553
No 126
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.42 E-value=2.4e-08 Score=76.09 Aligned_cols=40 Identities=25% Similarity=0.312 Sum_probs=38.2
Q ss_pred CCCCcccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhh
Q psy4078 26 GKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMT 65 (269)
Q Consensus 26 ~~~~r~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~ 65 (269)
++.+|.|++|+..|+.+|++.|..++||+..+|++|++.+
T Consensus 4 ~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~l 43 (102)
T 2da6_A 4 GSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEEC 43 (102)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 3678899999999999999999999999999999999999
No 127
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=4e-08 Score=70.79 Aligned_cols=52 Identities=17% Similarity=0.139 Sum_probs=46.9
Q ss_pred cccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCCCCC
Q psy4078 30 RVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGGDGK 81 (269)
Q Consensus 30 r~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~~~k 81 (269)
+.|..||.+|+.+|+..|..++||+..++++|+..+||++.+|+.|+.+.+.
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~ 60 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRK 60 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTT
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHH
Confidence 4567799999999999999999999999999999999999999888765443
No 128
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.38 E-value=1.3e-07 Score=67.63 Aligned_cols=51 Identities=18% Similarity=0.139 Sum_probs=46.5
Q ss_pred CcccccCCHHHHHHHHHhhC-CCCCCChhhHHHHHHhhhcccccccccCCCC
Q psy4078 29 TRVRTVLNEKQLHTLRTCYN-ANPRPDALMKEQLVEMTNLFLGRVRKVSGGD 79 (269)
Q Consensus 29 ~r~Rt~~t~~Ql~~L~~~F~-~n~~P~~~~re~La~~~gls~~~i~~~~~~~ 79 (269)
.+.|+.||.+|+.+|+..|. .++||+..++++|+..+||++.+|+.|+.+.
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNR 54 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQR 54 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 46789999999999999999 5999999999999999999999998877553
No 129
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=98.38 E-value=1.4e-07 Score=69.61 Aligned_cols=52 Identities=23% Similarity=0.352 Sum_probs=47.6
Q ss_pred CcccccCCHHHHHHHHHhh---CCCCCCChhhHHHHHHhhhcccccccccCCCCC
Q psy4078 29 TRVRTVLNEKQLHTLRTCY---NANPRPDALMKEQLVEMTNLFLGRVRKVSGGDG 80 (269)
Q Consensus 29 ~r~Rt~~t~~Ql~~L~~~F---~~n~~P~~~~re~La~~~gls~~~i~~~~~~~~ 80 (269)
+|.|+.|+.+|+++|+.+| ..++||+..++++|+..+||++.+|+.|+.+.+
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR 56 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKR 56 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 6789999999999999999 999999999999999999999999988876543
No 130
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.36 E-value=1.6e-07 Score=66.95 Aligned_cols=50 Identities=18% Similarity=0.164 Sum_probs=46.0
Q ss_pred cccccCCHHHHHHHHHhhCC-CCCCChhhHHHHHHhhhcccccccccCCCC
Q psy4078 30 RVRTVLNEKQLHTLRTCYNA-NPRPDALMKEQLVEMTNLFLGRVRKVSGGD 79 (269)
Q Consensus 30 r~Rt~~t~~Ql~~L~~~F~~-n~~P~~~~re~La~~~gls~~~i~~~~~~~ 79 (269)
+.|+.|+.+|+.+|+..|.. ++||+..++++||..+||++.+|+.|+.+.
T Consensus 3 k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNR 53 (72)
T 1uhs_A 3 EGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQR 53 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHH
Confidence 56799999999999999996 999999999999999999999998877553
No 131
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=98.32 E-value=2.2e-07 Score=68.27 Aligned_cols=53 Identities=21% Similarity=0.159 Sum_probs=47.9
Q ss_pred CCCcccccCCHHHHHHHHHhhCC---CCCCChhhHHHHHHhhhcccccccccCCCC
Q psy4078 27 KPTRVRTVLNEKQLHTLRTCYNA---NPRPDALMKEQLVEMTNLFLGRVRKVSGGD 79 (269)
Q Consensus 27 ~~~r~Rt~~t~~Ql~~L~~~F~~---n~~P~~~~re~La~~~gls~~~i~~~~~~~ 79 (269)
+.++.|+.|+.+|+.+|+.+|.. |+||+..++++|+..+||++.+|..|+.+.
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNr 61 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINA 61 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhh
Confidence 56788999999999999999876 699999999999999999999998887653
No 132
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=98.32 E-value=3e-08 Score=74.87 Aligned_cols=53 Identities=17% Similarity=0.171 Sum_probs=47.3
Q ss_pred CCCcccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCCC
Q psy4078 27 KPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGGD 79 (269)
Q Consensus 27 ~~~r~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~~ 79 (269)
..+|.|+.||.+|+.+|+..|..++||+..++++|+..+||++.+|+.|+.+.
T Consensus 24 ~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNR 76 (96)
T 3nar_A 24 GSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDT 76 (96)
T ss_dssp ---CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhh
Confidence 55678999999999999999999999999999999999999999998887654
No 133
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=98.32 E-value=2.1e-08 Score=68.08 Aligned_cols=47 Identities=11% Similarity=0.067 Sum_probs=42.2
Q ss_pred ccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCCC
Q psy4078 33 TVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGGD 79 (269)
Q Consensus 33 t~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~~ 79 (269)
|+||.+|+.+|+..|..++||+..++++|+..+|+++.+|+.|..+.
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNR 48 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNR 48 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHh
Confidence 67999999999999999999999999999999999999998876543
No 134
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=98.29 E-value=1.6e-07 Score=69.55 Aligned_cols=53 Identities=15% Similarity=0.169 Sum_probs=48.3
Q ss_pred CCCCcccccCCHHHHHHHHHhhCC---CCCCChhhHHHHHHhhhcccccccccCCC
Q psy4078 26 GKPTRVRTVLNEKQLHTLRTCYNA---NPRPDALMKEQLVEMTNLFLGRVRKVSGG 78 (269)
Q Consensus 26 ~~~~r~Rt~~t~~Ql~~L~~~F~~---n~~P~~~~re~La~~~gls~~~i~~~~~~ 78 (269)
.+.++.|+.|+.+|+.+|+.+|.. ++||+..++++|+..+||++.+|+.|+..
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqN 80 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSN 80 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 356677999999999999999999 99999999999999999999999887654
No 135
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=98.29 E-value=4.5e-08 Score=80.69 Aligned_cols=54 Identities=15% Similarity=0.151 Sum_probs=46.6
Q ss_pred CCCCcccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCCC
Q psy4078 26 GKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGGD 79 (269)
Q Consensus 26 ~~~~r~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~~ 79 (269)
.+.+|.||+|+.+|+.+|+.+|..++||+..++++||..+|+++.+|+.|+.+.
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNR 152 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNR 152 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHh
Confidence 467899999999999999999999999999999999999999999998887653
No 136
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=98.28 E-value=6e-08 Score=78.79 Aligned_cols=55 Identities=16% Similarity=0.169 Sum_probs=47.3
Q ss_pred CCCCCcccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCCC
Q psy4078 25 DGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGGD 79 (269)
Q Consensus 25 ~~~~~r~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~~ 79 (269)
.++.+|.||+||.+|+.+|+..|..++||+..++++||..+|+++.+|+.|+.+.
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNR 138 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNR 138 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhh
Confidence 3467889999999999999999999999999999999999999999998887553
No 137
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=98.27 E-value=7.4e-08 Score=78.58 Aligned_cols=54 Identities=19% Similarity=0.228 Sum_probs=50.1
Q ss_pred CCCCcccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCCC
Q psy4078 26 GKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGGD 79 (269)
Q Consensus 26 ~~~~r~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~~ 79 (269)
++.+|.|++|+.+|+.+|+.+|..|+||+..++++|+..+|+++.+|+.|+.+.
T Consensus 91 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNr 144 (151)
T 3d1n_I 91 SKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNR 144 (151)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHH
Confidence 467889999999999999999999999999999999999999999998887654
No 138
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=98.27 E-value=4.2e-08 Score=67.47 Aligned_cols=47 Identities=17% Similarity=0.217 Sum_probs=43.9
Q ss_pred cccCCHHHHHHHHHhhCC---CCCCChhhHHHHHHhhhcccccccccCCC
Q psy4078 32 RTVLNEKQLHTLRTCYNA---NPRPDALMKEQLVEMTNLFLGRVRKVSGG 78 (269)
Q Consensus 32 Rt~~t~~Ql~~L~~~F~~---n~~P~~~~re~La~~~gls~~~i~~~~~~ 78 (269)
|+.|+.+|+++|+.+|.. ++||+..++++|+..+|+++.+|+.|+.+
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqN 51 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSN 51 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 578999999999999999 99999999999999999999999877654
No 139
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=98.25 E-value=6e-08 Score=80.30 Aligned_cols=56 Identities=20% Similarity=0.176 Sum_probs=43.2
Q ss_pred CCCCCcccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCCCC
Q psy4078 25 DGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGGDG 80 (269)
Q Consensus 25 ~~~~~r~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~~~ 80 (269)
..+.+|.||+|+..|+.+|+.+|..|+||+..++++|+..+|+++.+|+.|+.+++
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR 151 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRR 151 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhh
Confidence 34678899999999999999999999999999999999999999999988876543
No 140
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=98.19 E-value=8.7e-08 Score=70.37 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=45.9
Q ss_pred cccccCCHHHHHHHHHhhCC---CCCCChhhHHHHHHhhhcccccccccCCCCC
Q psy4078 30 RVRTVLNEKQLHTLRTCYNA---NPRPDALMKEQLVEMTNLFLGRVRKVSGGDG 80 (269)
Q Consensus 30 r~Rt~~t~~Ql~~L~~~F~~---n~~P~~~~re~La~~~gls~~~i~~~~~~~~ 80 (269)
+.|+.|+.+|+.+|+.+|.. ++||+..++++|+..+||++.+|+.|+.+.+
T Consensus 4 krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR 57 (83)
T 1le8_B 4 YRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARR 57 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHH
Confidence 45667999999999999999 9999999999999999999999988886644
No 141
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=98.19 E-value=1.4e-07 Score=77.91 Aligned_cols=54 Identities=22% Similarity=0.318 Sum_probs=46.4
Q ss_pred CCCCcccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCCC
Q psy4078 26 GKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGGD 79 (269)
Q Consensus 26 ~~~~r~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~~ 79 (269)
.+.+|.|++|+.+|+.+|+..|..++||+..++++|+..+||++.+|+.|+.+.
T Consensus 95 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNr 148 (164)
T 2d5v_A 95 NTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNA 148 (164)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhh
Confidence 467899999999999999999999999999999999999999999998877553
No 142
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=2.5e-07 Score=68.80 Aligned_cols=48 Identities=13% Similarity=0.057 Sum_probs=43.8
Q ss_pred ccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCCCC
Q psy4078 33 TVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGGDG 80 (269)
Q Consensus 33 t~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~~~ 80 (269)
..||.+||.+|+..|..++||+..++++|+..+||++.+|+.|+.+.+
T Consensus 18 k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR 65 (89)
T 2dmp_A 18 KEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERR 65 (89)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHH
Confidence 349999999999999999999999999999999999999988876543
No 143
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=98.11 E-value=3.1e-07 Score=75.28 Aligned_cols=54 Identities=19% Similarity=0.206 Sum_probs=49.8
Q ss_pred CCCCcccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCCC
Q psy4078 26 GKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGGD 79 (269)
Q Consensus 26 ~~~~r~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~~ 79 (269)
.+.+|.|++|+.+|+.+|+..|..++||+..++++|+..+|+++.+|+.|+.+.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNR 147 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNR 147 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccc
Confidence 367789999999999999999999999999999999999999999998887653
No 144
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.05 E-value=3.3e-07 Score=68.24 Aligned_cols=47 Identities=13% Similarity=0.024 Sum_probs=44.1
Q ss_pred cCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCCCC
Q psy4078 34 VLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGGDG 80 (269)
Q Consensus 34 ~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~~~ 80 (269)
.||.+||.+|+..|..++||+..++++|+..+||++.+|+.|+.+.+
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR 63 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKK 63 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccc
Confidence 79999999999999999999999999999999999999988876644
No 145
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.04 E-value=9e-07 Score=61.79 Aligned_cols=47 Identities=23% Similarity=0.208 Sum_probs=43.0
Q ss_pred ccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCCC
Q psy4078 33 TVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGGD 79 (269)
Q Consensus 33 t~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~~ 79 (269)
..++++|+.+|+..|..|+||+..++++|+..+||++.+|+.|+.+.
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNR 54 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKM 54 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcc
Confidence 45789999999999999999999999999999999999998887543
No 146
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=97.94 E-value=1.2e-06 Score=75.35 Aligned_cols=45 Identities=24% Similarity=0.233 Sum_probs=39.1
Q ss_pred CCCCCCcccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcc
Q psy4078 24 GDGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLF 68 (269)
Q Consensus 24 ~~~~~~r~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls 68 (269)
..++.||.|+.|+..|+.+|+++|..|+||+..+|++|++.++..
T Consensus 138 ~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~ 182 (221)
T 2h8r_A 138 TNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRA 182 (221)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChh
Confidence 345789999999999999999999999999999999999999843
No 147
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=97.94 E-value=5.2e-07 Score=76.55 Aligned_cols=42 Identities=26% Similarity=0.263 Sum_probs=36.6
Q ss_pred CCCCCcccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhh
Q psy4078 25 DGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTN 66 (269)
Q Consensus 25 ~~~~~r~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~g 66 (269)
.++.||.|+.|+..|+.+|+..|..|+||+...|++|+..++
T Consensus 112 ~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~ 153 (194)
T 1ic8_A 112 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECN 153 (194)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHH
T ss_pred cccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhC
Confidence 457789999999999999999999999999999999999999
No 148
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.91 E-value=2.1e-06 Score=61.26 Aligned_cols=50 Identities=12% Similarity=0.089 Sum_probs=44.9
Q ss_pred cccccCCHHHHHHHHHhh-CCCCCCChhhHHHHHHhhhcccccccccCCCC
Q psy4078 30 RVRTVLNEKQLHTLRTCY-NANPRPDALMKEQLVEMTNLFLGRVRKVSGGD 79 (269)
Q Consensus 30 r~Rt~~t~~Ql~~L~~~F-~~n~~P~~~~re~La~~~gls~~~i~~~~~~~ 79 (269)
+.|..++.+|+++|+..| ..+.||+..++++|+..+|+++.+|+.|+.+.
T Consensus 10 k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNR 60 (72)
T 2cqx_A 10 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHR 60 (72)
T ss_dssp CCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhc
Confidence 455668999999999999 99999999999999999999999998877543
No 149
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=97.90 E-value=2.5e-06 Score=59.68 Aligned_cols=45 Identities=20% Similarity=0.282 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCCC
Q psy4078 35 LNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGGD 79 (269)
Q Consensus 35 ~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~~ 79 (269)
-|.+|+.+|+..|..++||+..++++||..+||++.+|+.|+.+.
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNR 55 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDH 55 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccc
Confidence 478999999999999999999999999999999999998887654
No 150
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=97.81 E-value=1.3e-06 Score=61.96 Aligned_cols=47 Identities=13% Similarity=0.078 Sum_probs=43.4
Q ss_pred ccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCCC
Q psy4078 33 TVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGGD 79 (269)
Q Consensus 33 t~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~~ 79 (269)
..+|..|+.+|+..|..++||+..++++||..+|+++.+|+.|..++
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNR 55 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNR 55 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhh
Confidence 46899999999999999999999999999999999999998887543
No 151
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=97.66 E-value=1.5e-05 Score=55.85 Aligned_cols=45 Identities=20% Similarity=0.211 Sum_probs=40.8
Q ss_pred cCCHHHHHHHHHhhC---CCCCCChhhHHHHHHhhhcccccccccCCC
Q psy4078 34 VLNEKQLHTLRTCYN---ANPRPDALMKEQLVEMTNLFLGRVRKVSGG 78 (269)
Q Consensus 34 ~~t~~Ql~~L~~~F~---~n~~P~~~~re~La~~~gls~~~i~~~~~~ 78 (269)
.|+.+|+.+|+.+|. .|+||+..++++|+..+|+++.+|..|+.+
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqN 51 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFIN 51 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHH
Confidence 599999999999999 999999999999999999999999887754
No 152
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.53 E-value=1.8e-05 Score=55.78 Aligned_cols=42 Identities=14% Similarity=0.128 Sum_probs=39.7
Q ss_pred HHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCC
Q psy4078 37 EKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGG 78 (269)
Q Consensus 37 ~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~ 78 (269)
++|+.+|+++|..|++|+.+++++||+.+||..+.|+.|+.+
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqN 55 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQ 55 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhh
Confidence 688999999999999999999999999999999999888765
No 153
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.36 E-value=1.4e-05 Score=55.68 Aligned_cols=43 Identities=12% Similarity=0.111 Sum_probs=38.5
Q ss_pred HHHHHHHHHhh-CCCCCCChhhHHHHHHhhhcccccccccCCCC
Q psy4078 37 EKQLHTLRTCY-NANPRPDALMKEQLVEMTNLFLGRVRKVSGGD 79 (269)
Q Consensus 37 ~~Ql~~L~~~F-~~n~~P~~~~re~La~~~gls~~~i~~~~~~~ 79 (269)
..|+.+|+..| ..+.||+...+++||+.+||++.+|+.|+.++
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNR 52 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQR 52 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 35799999999 78999999999999999999999998877543
No 154
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=96.97 E-value=7.6e-05 Score=68.82 Aligned_cols=53 Identities=11% Similarity=0.063 Sum_probs=48.2
Q ss_pred CCcccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccCCCCC
Q psy4078 28 PTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVSGGDG 80 (269)
Q Consensus 28 ~~r~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~~~~~ 80 (269)
.++.|+.|+.+|+..|++.|..++||+..+|++|+..+||++.+|+.|..+++
T Consensus 365 ~~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r 417 (421)
T 1mh3_A 365 QTAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKR 417 (421)
T ss_dssp HHHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred hhhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcc
Confidence 35678899999999999999999999999999999999999999988876543
No 155
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=96.86 E-value=0.00022 Score=52.78 Aligned_cols=47 Identities=21% Similarity=0.149 Sum_probs=42.8
Q ss_pred ccCCHHHHHHHHHhhCC---CCCCChhhHHHHHHhhhcccccccccCCCC
Q psy4078 33 TVLNEKQLHTLRTCYNA---NPRPDALMKEQLVEMTNLFLGRVRKVSGGD 79 (269)
Q Consensus 33 t~~t~~Ql~~L~~~F~~---n~~P~~~~re~La~~~gls~~~i~~~~~~~ 79 (269)
..|..+++++|+++|.. ++||+..++++|++.+||++.+|..|+.+.
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~Nr 59 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINA 59 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 56999999999999977 999999999999999999999998877653
No 156
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.34 E-value=0.009 Score=41.82 Aligned_cols=42 Identities=19% Similarity=0.325 Sum_probs=38.5
Q ss_pred chhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhc
Q psy4078 90 NEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQ 131 (269)
Q Consensus 90 t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFq 131 (269)
++.-..+|+++|...+.......+.|+.+.+|+..+|+.||-
T Consensus 14 ~p~~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa 55 (70)
T 2ys9_A 14 PPPDIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFD 55 (70)
T ss_dssp CCCCCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCcchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHH
Confidence 445568999999999999999999999999999999999995
No 157
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=84.75 E-value=0.21 Score=40.41 Aligned_cols=31 Identities=13% Similarity=-0.057 Sum_probs=22.3
Q ss_pred CCCccceeecchhhhhhhhhhcccCCCCChH
Q psy4078 80 GKPTRVRTVLNEKQLHTLRTCYNANPRPDAL 110 (269)
Q Consensus 80 ~k~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~ 110 (269)
.+.+|.||.|+..|+.+|+..|+.+++|...
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~~ 164 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQS 164 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCcccc
Confidence 4567899999999999999999999998753
No 158
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=81.95 E-value=0.054 Score=44.00 Aligned_cols=30 Identities=13% Similarity=-0.036 Sum_probs=22.0
Q ss_pred CCCCcccccCCHHHHHHHHHhhCCCCCCCh
Q psy4078 26 GKPTRVRTVLNEKQLHTLRTCYNANPRPDA 55 (269)
Q Consensus 26 ~~~~r~Rt~~t~~Ql~~L~~~F~~n~~P~~ 55 (269)
...+|+||.|+.+|+++|++.|..+++|..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 467899999999999999999999999974
No 159
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=76.00 E-value=4 Score=30.77 Aligned_cols=93 Identities=14% Similarity=0.121 Sum_probs=58.2
Q ss_pred ccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhccccccccc------CCCCCCCccceeecchhhhhhhhhhcccCCC
Q psy4078 33 TVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKV------SGGDGKPTRVRTVLNEKQLHTLRTCYNANPR 106 (269)
Q Consensus 33 t~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~------~~~~~k~rr~Rt~~t~~Ql~~Le~~F~~~~~ 106 (269)
..++.++...+...+... ....++++.+|++...|..+ .+......+ ...++.++...+... ..++.
T Consensus 5 ~~~s~~~r~~i~~~~~~G-----~s~~~ia~~lgis~~Tv~r~~~~~~~~g~~~~~gr-~~~l~~~~~~~i~~~-~~~~~ 77 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN-----VSLHEMSRKISRSRHCIRVYLKDPVSYGTSKRAPR-RKALSVRDERNVIRA-ASNSC 77 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT-----CCHHHHHHHHTCCHHHHHHHHHSGGGTTCCCCCCC-CCSSCHHHHHHHHHH-HHHCC
T ss_pred ccCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHcccccCCcCCCCC-CCcCCHHHHHHHHHH-HhCCC
Confidence 357888887777776432 24778999999988877332 111111122 234677777666655 34444
Q ss_pred CChHHHHHHHHHhC--CCchhhhhhhcchhh
Q psy4078 107 PDALMKEQLVEMTN--LSPRVIRVWFQNKRC 135 (269)
Q Consensus 107 p~~~~r~~La~~lg--L~~~~V~vWFqNRRa 135 (269)
.+. .+|+..+| ++...|..|+.....
T Consensus 78 ~s~---~~i~~~lg~~~s~~tV~r~l~~~g~ 105 (141)
T 1u78_A 78 KTA---RDIRNELQLSASKRTILNVIKRSGV 105 (141)
T ss_dssp CCH---HHHHHHTTCCSCHHHHHHHHHHTC-
T ss_pred CCH---HHHHHHHCCCccHHHHHHHHHHCCC
Confidence 343 56788888 788999999965443
No 160
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=73.12 E-value=2.2 Score=32.26 Aligned_cols=48 Identities=21% Similarity=0.306 Sum_probs=36.3
Q ss_pred ceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhh
Q psy4078 85 VRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRC 135 (269)
Q Consensus 85 ~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRa 135 (269)
.|..||.++...+-..+..+.... ..+||..+|++...|..|..+++.
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhh
Confidence 467899999877777665554433 347899999999999999876554
No 161
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=71.34 E-value=4.2 Score=28.91 Aligned_cols=47 Identities=6% Similarity=0.095 Sum_probs=34.0
Q ss_pred cchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHH
Q psy4078 89 LNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKR 140 (269)
Q Consensus 89 ~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~ 140 (269)
++..+..+|.-.|-.. ....++|..+|++...|+.+...-|.|.|+.
T Consensus 38 L~~~~r~vl~l~~~~g-----~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 84 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRG-----WSTAQIATDLGIAEGTVKSRLHYAVRALRLT 84 (92)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 5666777776644322 2467899999999999999987666666554
No 162
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=70.75 E-value=1.8 Score=26.62 Aligned_cols=42 Identities=10% Similarity=0.202 Sum_probs=28.2
Q ss_pred cchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhh
Q psy4078 89 LNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRC 135 (269)
Q Consensus 89 ~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRa 135 (269)
++.++...+...+... ....+||..+|++...|..|+.....
T Consensus 6 ~~~~~~~~i~~l~~~g-----~s~~~ia~~lgvs~~Tv~r~l~~~~~ 47 (52)
T 1jko_C 6 INKHEQEQISRLLEKG-----HPRQQLAIIFGIGVSTLYRYFPASSI 47 (52)
T ss_dssp SCTTHHHHHHHHHHTT-----CCHHHHHHTTSCCHHHHHHHSCTTC-
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHccc
Confidence 4555555444444432 23678999999999999999975443
No 163
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=70.56 E-value=9 Score=27.96 Aligned_cols=94 Identities=7% Similarity=-0.033 Sum_probs=54.3
Q ss_pred cCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhccccccccc-------CCCCCCCcc--ceeecchhhhhhhhhhcccC
Q psy4078 34 VLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKV-------SGGDGKPTR--VRTVLNEKQLHTLRTCYNAN 104 (269)
Q Consensus 34 ~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~-------~~~~~k~rr--~Rt~~t~~Ql~~Le~~F~~~ 104 (269)
.++.++...+...+... ....++++.+|++...|..+ +....+.+. ....++.++...+......+
T Consensus 17 ~~s~~~r~~i~~~~~~g-----~s~~~ia~~lgis~~Tv~~w~~~~~~~g~~~~~~~~g~~~~~l~~~~~~~i~~~~~~~ 91 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAADG-----IRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRIATPEIENRIEEYKRSS 91 (128)
T ss_dssp CCCHHHHHHHHHHHHTT-----CCHHHHHHHHTCCHHHHHHHHHHHHHHCCSSCCCCSCCCCCSSCSTHHHHHHHTTTTC
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHhhCCcccccCCCCCCCcCCHHHHHHHHHHHHhC
Confidence 47787777666666432 23678899999888777332 111111111 22356777777777777766
Q ss_pred CCCChHHHHHHHHHhCC-------Cchhhhhhhcc
Q psy4078 105 PRPDALMKEQLVEMTNL-------SPRVIRVWFQN 132 (269)
Q Consensus 105 ~~p~~~~r~~La~~lgL-------~~~~V~vWFqN 132 (269)
+..+..+......+.|+ +...|..|++.
T Consensus 92 ~~~s~~~i~~~l~~~g~~~~~~~~s~~tv~r~l~~ 126 (128)
T 1pdn_C 92 PGMFSWEIREKLIREGVCDRSTAPSVSAISRLVRG 126 (128)
T ss_dssp TTCCHHHHHHHHHHTSSSCSTTCCCHHHHHHHC--
T ss_pred cchHHHHHHHHHHHcCCccccCCcCHHHHHHHHHh
Confidence 66554433322222274 77888888753
No 164
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=70.56 E-value=17 Score=28.12 Aligned_cols=41 Identities=20% Similarity=0.325 Sum_probs=30.9
Q ss_pred CcccccCCHHHHHHHHHhh-CCCCCCChhhHHHHHH----hh--hcccccc
Q psy4078 29 TRVRTVLNEKQLHTLRTCY-NANPRPDALMKEQLVE----MT--NLFLGRV 72 (269)
Q Consensus 29 ~r~Rt~~t~~Ql~~L~~~F-~~n~~P~~~~re~La~----~~--gls~~~i 72 (269)
++.|.++|.+|+..|..++ ..++-.. ..+|++ .. +++...|
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~---q~~la~wa~~~f~~~is~sti 53 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSG---QQDLIEWFREKFGKDISQPSV 53 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCC---HHHHHHHHHHHHSSCCSSSST
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHCCCCcHHHH
Confidence 5688999999999999999 7777554 667777 77 4444444
No 165
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=67.75 E-value=2.5 Score=27.58 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=29.6
Q ss_pred eecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhc
Q psy4078 87 TVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQ 131 (269)
Q Consensus 87 t~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFq 131 (269)
..|+.+....+...+... ........++|.++|++...|..|..
T Consensus 4 ~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 4 RIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 457777665554444432 22122367899999999999999975
No 166
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=67.66 E-value=2.5 Score=30.04 Aligned_cols=43 Identities=12% Similarity=0.137 Sum_probs=30.1
Q ss_pred cceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhc
Q psy4078 84 RVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQ 131 (269)
Q Consensus 84 r~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFq 131 (269)
+.+..|+.++.......+.. .. ...++|..+|++...|..|..
T Consensus 18 ~~~~~ys~e~k~~~v~~~~~-g~----s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 18 RPLRSLTPRDKIHAIQRIHD-GE----SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp SCCSSCCHHHHHHHHHHHHH-TC----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHC-CC----CHHHHHHHHCcCHHHHHHHHH
Confidence 34567888776554445542 22 356889999999999999973
No 167
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=65.11 E-value=3 Score=27.60 Aligned_cols=46 Identities=15% Similarity=-0.002 Sum_probs=33.1
Q ss_pred cchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHH
Q psy4078 89 LNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKK 139 (269)
Q Consensus 89 ~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk 139 (269)
++..+..+|...|-.. ....++|..+|++...|+.|...-+.+.++
T Consensus 16 L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 16 LTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 5667777777655322 235789999999999999988765555543
No 168
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=62.48 E-value=22 Score=27.50 Aligned_cols=93 Identities=15% Similarity=0.024 Sum_probs=54.8
Q ss_pred cCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccccccC-------CCCCCCc--cceeecchhhhhhhhhhcccC
Q psy4078 34 VLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKVS-------GGDGKPT--RVRTVLNEKQLHTLRTCYNAN 104 (269)
Q Consensus 34 ~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~~-------~~~~k~r--r~Rt~~t~~Ql~~Le~~F~~~ 104 (269)
.++.++...+...+... ....++++.+|++...|..+- ....+.+ +.+..++.++...|...+..+
T Consensus 25 ~~s~e~r~~ii~l~~~G-----~s~~~IA~~lgis~~TV~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~~ 99 (159)
T 2k27_A 25 PLPEVVRQRIVDLAHQG-----VRPCDISRQLRVSHGCVSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQN 99 (159)
T ss_dssp SSCHHHHHHHHHHHHHT-----CCHHHHHHHHTCCSHHHHHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHHC
Confidence 58888877666666432 346789999999888774421 1111111 123457777777777777666
Q ss_pred CCCChHHHHH-HHHH------hCCCchhhhhhhc
Q psy4078 105 PRPDALMKEQ-LVEM------TNLSPRVIRVWFQ 131 (269)
Q Consensus 105 ~~p~~~~r~~-La~~------lgL~~~~V~vWFq 131 (269)
+..+..+... |.++ ..++...|..|+.
T Consensus 100 ~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~ 133 (159)
T 2k27_A 100 PTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIR 133 (159)
T ss_dssp SSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHhcccccCCccCHHHHHHHHH
Confidence 6555444332 3222 1367777777774
No 169
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=59.90 E-value=5.7 Score=23.71 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=26.9
Q ss_pred cchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcch
Q psy4078 89 LNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNK 133 (269)
Q Consensus 89 ~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNR 133 (269)
++.++...+...+... . ...++|+.+|++...|..|...-
T Consensus 6 l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 6 LSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp CCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHhhH
Confidence 5555554444444322 2 36689999999999999998643
No 170
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=57.90 E-value=6.4 Score=27.45 Aligned_cols=49 Identities=12% Similarity=0.185 Sum_probs=36.3
Q ss_pred eecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHH
Q psy4078 87 TVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRA 141 (269)
Q Consensus 87 t~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~ 141 (269)
..++..+..+|.-+++ .....++|+.+|++...|+.+..+-+.|.+...
T Consensus 20 ~~Lt~~e~~vl~l~~~------g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 68 (82)
T 1je8_A 20 NQLTPRERDILKLIAQ------GLPNKMIARRLDITESTVKVHVKHMLKKMKLKS 68 (82)
T ss_dssp GGSCHHHHHHHHHHTT------TCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCSS
T ss_pred ccCCHHHHHHHHHHHc------CCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 3478888888877432 234678999999999999999887666655443
No 171
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=56.94 E-value=13 Score=27.68 Aligned_cols=39 Identities=15% Similarity=0.123 Sum_probs=28.0
Q ss_pred ccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhcccccc
Q psy4078 31 VRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRV 72 (269)
Q Consensus 31 ~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i 72 (269)
.|..||.+++..+...+..+... ...++++.+|++...|
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~---~~~~~A~~~gvs~stl 42 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDL---RKGEIARRFNIPPSTL 42 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTS---CHHHHHHHHTCCHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCC---cHHHHHHHhCCCHHHH
Confidence 46789999998777776444433 2457888899887665
No 172
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=56.54 E-value=6.5 Score=26.09 Aligned_cols=50 Identities=14% Similarity=0.113 Sum_probs=34.0
Q ss_pred ecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHH
Q psy4078 88 VLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDK 138 (269)
Q Consensus 88 ~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~k 138 (269)
.+++.+..+|.-.|-.+.+ ......++|..+|++...|+.+...-+.|.|
T Consensus 5 ~L~~~er~il~l~~~l~~~-~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr 54 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLR 54 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHGGG
T ss_pred cCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 3677778888777722111 1223578999999999999998765555544
No 173
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=55.58 E-value=8 Score=30.06 Aligned_cols=50 Identities=14% Similarity=0.173 Sum_probs=36.8
Q ss_pred ccceeecchhhhhhhhhhc-ccCCCCChHHHHHHH-HHh--CCCchhhhhhhcc
Q psy4078 83 TRVRTVLNEKQLHTLRTCY-NANPRPDALMKEQLV-EMT--NLSPRVIRVWFQN 132 (269)
Q Consensus 83 rr~Rt~~t~~Ql~~Le~~F-~~~~~p~~~~r~~La-~~l--gL~~~~V~vWFqN 132 (269)
++.|.++|.+|...|-.++ +.++.....+....| .++ +++...|..|..|
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~ 59 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSS 59 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhh
Confidence 4678899999999999998 677766544333322 167 7888899998855
No 174
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=55.20 E-value=11 Score=28.73 Aligned_cols=47 Identities=11% Similarity=0.054 Sum_probs=32.9
Q ss_pred ecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHH
Q psy4078 88 VLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKR 140 (269)
Q Consensus 88 ~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~ 140 (269)
.++..+..+|. .|- ......++|..+|++...|+.+...-|.+.|+.
T Consensus 109 ~L~~~~r~v~~-~~~-----~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~ 155 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLI-----RGYSYREIATILSKNLKSIDNTIQRIRKKSEEW 155 (164)
T ss_dssp HSCHHHHHHHH-HHT-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHH-----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 45666666766 332 223468899999999999999887666555544
No 175
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=54.91 E-value=6.9 Score=26.00 Aligned_cols=47 Identities=11% Similarity=0.140 Sum_probs=34.8
Q ss_pred eecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHH
Q psy4078 87 TVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKK 139 (269)
Q Consensus 87 t~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk 139 (269)
..++..+..+|.-+++ .+ ...++|..+|++...|+.++.+-+.|.+.
T Consensus 10 ~~L~~~e~~il~~~~~--g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 10 PLLTKREREVFELLVQ--DK----TTKEIASELFISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp CCCCHHHHHHHHHHTT--TC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHc--CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Confidence 4578888888877432 22 45789999999999999988765555543
No 176
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=54.20 E-value=8.3 Score=27.64 Aligned_cols=45 Identities=11% Similarity=0.107 Sum_probs=32.6
Q ss_pred ecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHH
Q psy4078 88 VLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDK 138 (269)
Q Consensus 88 ~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~k 138 (269)
.++..+..+|.-.++-- ...++|..+|++...|+.+..+-+.|.+
T Consensus 27 ~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r~~~kL~ 71 (95)
T 3c57_A 27 GLTDQERTLLGLLSEGL------TNKQIADRMFLAEKTVKNYVSRLLAKLG 71 (95)
T ss_dssp CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 47778888887753322 2478999999999999988765554444
No 177
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=53.19 E-value=6.7 Score=28.70 Aligned_cols=46 Identities=17% Similarity=0.080 Sum_probs=34.4
Q ss_pred eecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHH
Q psy4078 87 TVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDK 138 (269)
Q Consensus 87 t~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~k 138 (269)
..++..+..+|.-.++-- ...++|+.+|+++..|+.+..+-+.|..
T Consensus 33 ~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 33 KRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp SSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 457888888887755321 3488999999999999999876555544
No 178
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=53.02 E-value=8.3 Score=26.07 Aligned_cols=48 Identities=23% Similarity=0.299 Sum_probs=34.5
Q ss_pred ecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHH
Q psy4078 88 VLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRA 141 (269)
Q Consensus 88 ~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~ 141 (269)
.++..+..+|.-+|+ . ....++|..+|++...|+.+..+-+.|.+...
T Consensus 16 ~L~~~e~~vl~l~~~--g----~s~~eIA~~l~is~~tV~~~~~r~~~kl~~~~ 63 (79)
T 1x3u_A 16 TLSERERQVLSAVVA--G----LPNKSIAYDLDISPRTVEVHRANVMAKMKAKS 63 (79)
T ss_dssp HHCHHHHHHHHHHTT--T----CCHHHHHHHTTSCHHHHHHHHHHHHHHTTCCS
T ss_pred hCCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 366777777766432 2 23568999999999999999887666666433
No 179
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=52.80 E-value=28 Score=26.49 Aligned_cols=92 Identities=13% Similarity=0.045 Sum_probs=57.4
Q ss_pred cCCHHHHHHHHHhhCCCCCCChhhHHHHHHhhhccccccccc-------CCCCCCCc--cceeecchhhhhhhhhhcccC
Q psy4078 34 VLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLFLGRVRKV-------SGGDGKPT--RVRTVLNEKQLHTLRTCYNAN 104 (269)
Q Consensus 34 ~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~gls~~~i~~~-------~~~~~k~r--r~Rt~~t~~Ql~~Le~~F~~~ 104 (269)
.++.++...+...+... ....++++.+|++...|..+ +....+.+ +....++.++...+...+..+
T Consensus 32 ~~s~e~r~~iv~~~~~G-----~s~~~iA~~lgis~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~~ 106 (149)
T 1k78_A 32 PLPDVVRQRIVELAHQG-----VRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQN 106 (149)
T ss_dssp CCCHHHHHHHHHHHHTT-----CCHHHHHHHHTCCHHHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHHhC
Confidence 58888877766666431 24678899999988777432 21111111 223457777778888777766
Q ss_pred CCCChHHHHHHHHHh--------C--CCchhhhhhhcch
Q psy4078 105 PRPDALMKEQLVEMT--------N--LSPRVIRVWFQNK 133 (269)
Q Consensus 105 ~~p~~~~r~~La~~l--------g--L~~~~V~vWFqNR 133 (269)
+..+..+ |+..+ | ++...|..|+...
T Consensus 107 ~~~s~~~---i~~~l~~~~~~~~g~~~S~sTV~r~L~~~ 142 (149)
T 1k78_A 107 PTMFAWE---IRDRLLAERVCDNDTVPSVSSINRIIRTK 142 (149)
T ss_dssp TTCCHHH---HHHHHHHTTSSCTTTSCCHHHHHHHHHCC
T ss_pred cchhHHH---HHHHHHHhcccccCCCcCHHHHHHHHHHH
Confidence 6555443 33333 5 6888899998654
No 180
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=51.85 E-value=13 Score=24.98 Aligned_cols=49 Identities=16% Similarity=0.038 Sum_probs=34.1
Q ss_pred cchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHH
Q psy4078 89 LNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDK 138 (269)
Q Consensus 89 ~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~k 138 (269)
++..+..+|...|-.... ......++|..+|++...|+.|...-+.+.+
T Consensus 11 L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 11 LSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp SCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 677778888777641100 1123578999999999999998876655555
No 181
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=50.30 E-value=13 Score=28.13 Aligned_cols=38 Identities=21% Similarity=0.366 Sum_probs=24.5
Q ss_pred hhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHHHHHHH
Q psy4078 95 HTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRALAMKQ 146 (269)
Q Consensus 95 ~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~~~~~~ 146 (269)
.+++-.|+.|+||...=- ++- =.|||.+||.++++...
T Consensus 16 RiIkiLyQSNPyP~peGT-----------Rqa---RRNRRRRWR~RQrQI~~ 53 (115)
T 2x7l_M 16 RLIKFLYQSNPPPNPEGT-----------RQA---RRNRRRRWRERQRQIHS 53 (115)
T ss_dssp HHHHHHHHSSCCCCCCCC-----------TTT---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCCCCCCc-----------hhh---hHhHHHHHHHHHHHHHH
Confidence 344555889999975311 111 15999999999876543
No 182
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=49.68 E-value=10 Score=28.42 Aligned_cols=49 Identities=10% Similarity=0.146 Sum_probs=36.3
Q ss_pred ecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHH
Q psy4078 88 VLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRA 141 (269)
Q Consensus 88 ~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~ 141 (269)
.++..+..+|.-.|... ....++|..+|++...|+.|...-|.+.++.-
T Consensus 22 ~L~~~~r~vl~l~y~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 70 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADD-----YSLAEIADEFGVSRQAVYDNIKRTEKILETYE 70 (113)
T ss_dssp GSCHHHHHHHHHHHHTC-----CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 36677777777654332 23578999999999999999988777766543
No 183
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=48.25 E-value=11 Score=26.05 Aligned_cols=37 Identities=22% Similarity=0.381 Sum_probs=24.1
Q ss_pred hhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHHHHHH
Q psy4078 95 HTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRALAMK 145 (269)
Q Consensus 95 ~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~~~~~ 145 (269)
.+++-.|+.|+||...--.. | =.|||.+||.++.+..
T Consensus 19 RiIkiLyQSNP~P~p~GTrq-a-------------RRNRRRRWR~RQrQI~ 55 (72)
T 3lph_A 19 RLIKFLYQSNPPPNPEGTRQ-A-------------RRNRRRRWRERQRQIH 55 (72)
T ss_dssp HHHHHHHHTCCCCCCCSCHH-H-------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCCCCCCchH-H-------------HHHHHHHHHHHHHHHH
Confidence 34455688899997542111 1 1489999999887654
No 184
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=46.04 E-value=16 Score=27.15 Aligned_cols=48 Identities=15% Similarity=0.112 Sum_probs=35.6
Q ss_pred cchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHH
Q psy4078 89 LNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRA 141 (269)
Q Consensus 89 ~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~ 141 (269)
++..+..+|.-.|... ....++|..+|++...|+.+...-|.+.|+.-
T Consensus 26 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 73 (113)
T 1xsv_A 26 LTNKQRNYLELFYLED-----YSLSEIADTFNVSRQAVYDNIRRTGDLVEDYE 73 (113)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 5666777776654322 23578999999999999999987777776553
No 185
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=45.95 E-value=7.8 Score=27.38 Aligned_cols=47 Identities=11% Similarity=0.205 Sum_probs=34.2
Q ss_pred ecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHH
Q psy4078 88 VLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKR 140 (269)
Q Consensus 88 ~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~ 140 (269)
.++..+..+|.-+++ .+ ...++|..+|++...|+.+..+-+.|.+..
T Consensus 29 ~Lt~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 75 (91)
T 2rnj_A 29 MLTEREMEILLLIAK--GY----SNQEIASASHITIKTVKTHVSNILSKLEVQ 75 (91)
T ss_dssp GCCSHHHHHHHHHHT--TC----CTTHHHHHHTCCHHHHHHHHHHHHHHTTCC
T ss_pred cCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 477778888876443 22 245899999999999999988766665543
No 186
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=45.62 E-value=22 Score=25.55 Aligned_cols=46 Identities=11% Similarity=0.084 Sum_probs=35.4
Q ss_pred ceeecchhhhhhhhhhcc-----cCCCCChHHHHHHHHHhCC--Cchhhhhhh
Q psy4078 85 VRTVLNEKQLHTLRTCYN-----ANPRPDALMKEQLVEMTNL--SPRVIRVWF 130 (269)
Q Consensus 85 ~Rt~~t~~Ql~~Le~~F~-----~~~~p~~~~r~~La~~lgL--~~~~V~vWF 130 (269)
....++.+++..|+++|. .+.+.+..+...+...+|+ ++..|+.+|
T Consensus 26 ~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~ 78 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVII 78 (100)
T ss_dssp SCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 345688999999999985 4578999988888888874 566666665
No 187
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=45.00 E-value=13 Score=26.44 Aligned_cols=43 Identities=9% Similarity=0.192 Sum_probs=28.6
Q ss_pred eecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcc
Q psy4078 87 TVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQN 132 (269)
Q Consensus 87 t~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqN 132 (269)
..|+.++....-..+.... .....++|..+|++...|..|.+.
T Consensus 4 ~~ys~e~k~~~v~~~~~~~---g~s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSD---GASLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGG---GSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcC---CChHHHHHHHHCcCHHHHHHHHHH
Confidence 4577776654444443220 123678999999999999999853
No 188
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=44.82 E-value=12 Score=30.51 Aligned_cols=47 Identities=9% Similarity=0.089 Sum_probs=33.9
Q ss_pred cchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHH
Q psy4078 89 LNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKR 140 (269)
Q Consensus 89 ~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~ 140 (269)
++..+..+|.-.|-. .....++|+.+|++...|+.+...-|.+.|+.
T Consensus 188 L~~~~r~vl~l~~~~-----g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~ 234 (239)
T 1rp3_A 188 LPEREKLVIQLIFYE-----ELPAKEVAKILETSVSRVSQLKAKALERLREM 234 (239)
T ss_dssp SCHHHHHHHHHHHTS-----CCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhc-----CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 566666666665532 23467899999999999999987666666553
No 189
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=43.24 E-value=14 Score=29.05 Aligned_cols=47 Identities=13% Similarity=0.075 Sum_probs=31.6
Q ss_pred cchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHH
Q psy4078 89 LNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKR 140 (269)
Q Consensus 89 ~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~ 140 (269)
++..+..+|.-.|-. .....++|..+|++...|+.+...-|.+.|+.
T Consensus 141 L~~~~r~vl~l~~~~-----g~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~ 187 (194)
T 1or7_A 141 LPEDLRMAITLRELD-----GLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 187 (194)
T ss_dssp SCHHHHHHHHHHHTT-----CCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHc-----CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 444555555443322 22357899999999999999988666666553
No 190
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=41.43 E-value=13 Score=23.69 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=21.6
Q ss_pred HHHHHHHhCCCchhhhhhhcchhhh
Q psy4078 112 KEQLVEMTNLSPRVIRVWFQNKRCK 136 (269)
Q Consensus 112 r~~La~~lgL~~~~V~vWFqNRRak 136 (269)
..+||..+|++...|..|..+++.-
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~~~ 41 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKYNP 41 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCCC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCCC
Confidence 5789999999999999999887643
No 191
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=40.39 E-value=12 Score=26.15 Aligned_cols=49 Identities=18% Similarity=0.112 Sum_probs=32.9
Q ss_pred cchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHH
Q psy4078 89 LNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDK 138 (269)
Q Consensus 89 ~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~k 138 (269)
++..+..+|...|-...- ......++|..+|++...|+.|...-+.|.|
T Consensus 19 L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr 67 (87)
T 1tty_A 19 LSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALRKLR 67 (87)
T ss_dssp SCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHB
T ss_pred CCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 566677777766631100 1223678999999999999998876555544
No 192
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=40.06 E-value=14 Score=23.66 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=21.4
Q ss_pred HHHHHHHhCCCchhhhhhhcchhh
Q psy4078 112 KEQLVEMTNLSPRVIRVWFQNKRC 135 (269)
Q Consensus 112 r~~La~~lgL~~~~V~vWFqNRRa 135 (269)
..+||..+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSETE 44 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCC
Confidence 578999999999999999988665
No 193
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=39.87 E-value=14 Score=25.82 Aligned_cols=44 Identities=7% Similarity=0.067 Sum_probs=31.9
Q ss_pred ecchhhhhhhhhhccc-----CCCCChHHHHHHHHHhCCCchhhhhhhc
Q psy4078 88 VLNEKQLHTLRTCYNA-----NPRPDALMKEQLVEMTNLSPRVIRVWFQ 131 (269)
Q Consensus 88 ~~t~~Ql~~Le~~F~~-----~~~p~~~~r~~La~~lgL~~~~V~vWFq 131 (269)
.++.++...+++.|.. +.+.+..+...+...+|++...|+.+|.
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 50 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWE 50 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4677788888888753 4567777777777778888777766663
No 194
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=39.48 E-value=13 Score=23.68 Aligned_cols=29 Identities=14% Similarity=0.069 Sum_probs=23.3
Q ss_pred HHHHHHHhCCCchhhhhhhcchhhhHHHH
Q psy4078 112 KEQLVEMTNLSPRVIRVWFQNKRCKDKKR 140 (269)
Q Consensus 112 r~~La~~lgL~~~~V~vWFqNRRak~kk~ 140 (269)
..++|..+|+++..|+.+..+-+.|.+..
T Consensus 16 ~~eIA~~l~is~~tV~~~~~~~~~kl~~~ 44 (61)
T 2jpc_A 16 NHGISEKLHISIKTVETHRMNMMRKLQVH 44 (61)
T ss_dssp SHHHHHHTCSCHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHCCC
Confidence 36899999999999999987766665543
No 195
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=38.52 E-value=14 Score=25.03 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=21.8
Q ss_pred HHHHHHHhCCCchhhhhhhcchhhh
Q psy4078 112 KEQLVEMTNLSPRVIRVWFQNKRCK 136 (269)
Q Consensus 112 r~~La~~lgL~~~~V~vWFqNRRak 136 (269)
..+||+.+|++...|..|..+++.-
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~~p 38 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGRVP 38 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTCCC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCCCC
Confidence 5789999999999999999887643
No 196
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=38.45 E-value=15 Score=23.81 Aligned_cols=25 Identities=8% Similarity=0.118 Sum_probs=21.9
Q ss_pred HHHHHHHhCCCchhhhhhhcchhhh
Q psy4078 112 KEQLVEMTNLSPRVIRVWFQNKRCK 136 (269)
Q Consensus 112 r~~La~~lgL~~~~V~vWFqNRRak 136 (269)
..+||..+|++...|..|..+++..
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~~ 43 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTKR 43 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCCC
Confidence 5789999999999999999887653
No 197
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=37.53 E-value=16 Score=24.03 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=21.5
Q ss_pred HHHHHHHhCCCchhhhhhhcchhh
Q psy4078 112 KEQLVEMTNLSPRVIRVWFQNKRC 135 (269)
Q Consensus 112 r~~La~~lgL~~~~V~vWFqNRRa 135 (269)
..+||+.+|++...|..|..+++.
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~~ 49 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKSQ 49 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 578999999999999999988764
No 198
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=36.64 E-value=25 Score=24.90 Aligned_cols=47 Identities=17% Similarity=0.172 Sum_probs=33.4
Q ss_pred ceeecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhH
Q psy4078 85 VRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKD 137 (269)
Q Consensus 85 ~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~ 137 (269)
....|+..+..+|.-.++ . ....++|..+|+++..|+....+-+.|.
T Consensus 26 ~~~~Lt~rE~~Vl~l~~~--G----~s~~eIA~~L~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVEK--G----FTNQEIADALHLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp ---CCCHHHHHHHHHHHT--T----CCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred cccCCCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 345688888888877652 2 2367899999999999998776544443
No 199
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=35.77 E-value=19 Score=22.45 Aligned_cols=39 Identities=10% Similarity=0.186 Sum_probs=26.5
Q ss_pred ecc--hhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhc
Q psy4078 88 VLN--EKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQ 131 (269)
Q Consensus 88 ~~t--~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFq 131 (269)
.++ .++...+...+.. .+ ...++|..+|++...|..|+.
T Consensus 13 ~l~~~~~~~~~i~~l~~~-g~----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 13 YVESEDDLVSVAHELAKM-GY----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp EECSHHHHHHHHHHHHHT-TC----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHH
Confidence 455 5555554444432 22 367899999999999999985
No 200
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=35.59 E-value=19 Score=25.31 Aligned_cols=44 Identities=9% Similarity=0.102 Sum_probs=31.7
Q ss_pred ecchhhhhhhhhhcc-----cCCCCChHHHHHHHHHhCCCchhhhhhhc
Q psy4078 88 VLNEKQLHTLRTCYN-----ANPRPDALMKEQLVEMTNLSPRVIRVWFQ 131 (269)
Q Consensus 88 ~~t~~Ql~~Le~~F~-----~~~~p~~~~r~~La~~lgL~~~~V~vWFq 131 (269)
.++.++...|++.|. .+.+.+..+...+...+|++...|+.+|.
T Consensus 3 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 51 (95)
T 1c07_A 3 VVSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWS 51 (95)
T ss_dssp SSCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHH
Confidence 356778888888874 34677777777777778888777766663
No 201
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=35.44 E-value=19 Score=24.85 Aligned_cols=45 Identities=18% Similarity=0.182 Sum_probs=33.7
Q ss_pred eecchhhhhhhhhhcc-----cCCCCChHHHHHHHHHhCCCchhhhhhhc
Q psy4078 87 TVLNEKQLHTLRTCYN-----ANPRPDALMKEQLVEMTNLSPRVIRVWFQ 131 (269)
Q Consensus 87 t~~t~~Ql~~Le~~F~-----~~~~p~~~~r~~La~~lgL~~~~V~vWFq 131 (269)
..++.+++..|...|. .+.+.+..+...+...+|++...|+.+|.
T Consensus 19 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 19 ADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 4577888888888874 35677888888888888887777766663
No 202
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=35.13 E-value=19 Score=23.71 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=21.2
Q ss_pred HHHHHHHhCCCchhhhhhhcchhh
Q psy4078 112 KEQLVEMTNLSPRVIRVWFQNKRC 135 (269)
Q Consensus 112 r~~La~~lgL~~~~V~vWFqNRRa 135 (269)
..+||..+|++...|..|..+++.
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~~ 47 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTNDVQ 47 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 578999999999999999988754
No 203
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=35.13 E-value=18 Score=23.70 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=21.4
Q ss_pred HHHHHHHhCCCchhhhhhhcchhh
Q psy4078 112 KEQLVEMTNLSPRVIRVWFQNKRC 135 (269)
Q Consensus 112 r~~La~~lgL~~~~V~vWFqNRRa 135 (269)
..+||+.+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSETE 44 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 578999999999999999988665
No 204
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=33.59 E-value=20 Score=23.59 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=21.2
Q ss_pred HHHHHHHhCCCchhhhhhhcchhh
Q psy4078 112 KEQLVEMTNLSPRVIRVWFQNKRC 135 (269)
Q Consensus 112 r~~La~~lgL~~~~V~vWFqNRRa 135 (269)
..+||..+|++...|..|..+++.
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~~ 49 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDRN 49 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCSC
T ss_pred HHHHHHHHCCCHHHHHHHHCCCCC
Confidence 578999999999999999988754
No 205
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=33.46 E-value=20 Score=22.96 Aligned_cols=25 Identities=12% Similarity=0.146 Sum_probs=21.8
Q ss_pred HHHHHHHhCCCchhhhhhhcchhhh
Q psy4078 112 KEQLVEMTNLSPRVIRVWFQNKRCK 136 (269)
Q Consensus 112 r~~La~~lgL~~~~V~vWFqNRRak 136 (269)
..+||..+|++...|..|..+++..
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~~~ 41 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKTKR 41 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCCC
Confidence 5789999999999999999887653
No 206
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=33.08 E-value=33 Score=23.49 Aligned_cols=27 Identities=15% Similarity=0.255 Sum_probs=22.1
Q ss_pred HHHHHHHhCCCchhhhhhhcchhhhHH
Q psy4078 112 KEQLVEMTNLSPRVIRVWFQNKRCKDK 138 (269)
Q Consensus 112 r~~La~~lgL~~~~V~vWFqNRRak~k 138 (269)
.++||+.||++..-|-.|+.++..-.+
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g~~iP~~ 39 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQAGEIPPL 39 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHTSCCHH
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCCCHH
Confidence 688999999999999999976444433
No 207
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=33.05 E-value=22 Score=27.49 Aligned_cols=45 Identities=4% Similarity=0.028 Sum_probs=29.4
Q ss_pred cchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHH
Q psy4078 89 LNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDK 138 (269)
Q Consensus 89 ~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~k 138 (269)
++..+..+|.-.| .......++|+.+|+++..|+.+...-|.+.|
T Consensus 94 Lp~~~r~vl~L~~-----~~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr 138 (157)
T 2lfw_A 94 MTPLSRQALLLTA-----MEGFSPEDAAYLIEVDTSEVETLVTEALAEIE 138 (157)
T ss_dssp SCTTHHHHHTTTS-----SSCCCHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-----HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 4445555554332 22334689999999999999998865444444
No 208
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=32.61 E-value=15 Score=28.70 Aligned_cols=40 Identities=8% Similarity=0.109 Sum_probs=32.7
Q ss_pred hhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhh
Q psy4078 95 HTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCK 136 (269)
Q Consensus 95 ~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak 136 (269)
..-.+.|.+..| . ....+||+..|++...|..+|.||-.=
T Consensus 22 ~aA~~lf~~~G~-~-~s~~~IA~~agvs~~tlY~~F~sK~~L 61 (194)
T 2q24_A 22 AAAVRVFSEEGL-D-AHLERIAREAGVGSGTLYRNFPTREAL 61 (194)
T ss_dssp HHHHHHHHHHCT-T-CCHHHHHHHTTCCHHHHHHHCCSHHHH
T ss_pred HHHHHHHHhcCc-C-CCHHHHHHHhCCChHHHHHHcCCHHHH
Confidence 344556888888 5 788999999999999999999986543
No 209
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=32.43 E-value=18 Score=28.37 Aligned_cols=40 Identities=8% Similarity=0.141 Sum_probs=32.3
Q ss_pred hhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhh
Q psy4078 95 HTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCK 136 (269)
Q Consensus 95 ~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak 136 (269)
..-.+.|.+..| . ....+||++.|++...|..+|.||-.=
T Consensus 20 ~aA~~lf~~~G~-~-~t~~~IA~~agvs~~tlY~~F~sK~~L 59 (196)
T 2qwt_A 20 EVAYDTFAAEGL-G-VPMDEIARRAGVGAGTVYRHFPTKQAL 59 (196)
T ss_dssp HHHHHHHHHTCT-T-SCHHHHHHHTTSCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHhcCC-C-CCHHHHHHHhCCCHHHHHHHCCCHHHH
Confidence 344556888888 5 678999999999999999999986543
No 210
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=31.72 E-value=23 Score=23.36 Aligned_cols=23 Identities=9% Similarity=0.356 Sum_probs=21.1
Q ss_pred HHHHHHHhCCCchhhhhhhcchh
Q psy4078 112 KEQLVEMTNLSPRVIRVWFQNKR 134 (269)
Q Consensus 112 r~~La~~lgL~~~~V~vWFqNRR 134 (269)
..+||..+|++...|..|..+++
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 57899999999999999999876
No 211
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=31.60 E-value=23 Score=23.88 Aligned_cols=24 Identities=8% Similarity=0.228 Sum_probs=21.5
Q ss_pred HHHHHHHhCCCchhhhhhhcchhh
Q psy4078 112 KEQLVEMTNLSPRVIRVWFQNKRC 135 (269)
Q Consensus 112 r~~La~~lgL~~~~V~vWFqNRRa 135 (269)
..+||..+|++...|..|..+++.
T Consensus 28 q~~lA~~~gvs~~~is~~e~g~~~ 51 (80)
T 3kz3_A 28 YESVADKMGMGQSAVAALFNGINA 51 (80)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHhCcCHHHHHHHHcCCCC
Confidence 568999999999999999988765
No 212
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=31.46 E-value=23 Score=23.01 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=21.2
Q ss_pred HHHHHHHhCCCchhhhhhhcchhh
Q psy4078 112 KEQLVEMTNLSPRVIRVWFQNKRC 135 (269)
Q Consensus 112 r~~La~~lgL~~~~V~vWFqNRRa 135 (269)
..+||..+|++...|..|..+++.
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~~~ 52 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQRN 52 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCSC
T ss_pred HHHHHHHHCcCHHHHHHHHCCCCC
Confidence 578999999999999999988654
No 213
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=31.12 E-value=23 Score=24.79 Aligned_cols=25 Identities=12% Similarity=0.377 Sum_probs=21.8
Q ss_pred HHHHHHHhCCCchhhhhhhcchhhh
Q psy4078 112 KEQLVEMTNLSPRVIRVWFQNKRCK 136 (269)
Q Consensus 112 r~~La~~lgL~~~~V~vWFqNRRak 136 (269)
..+||+.+|++...|..|..+++.-
T Consensus 25 q~~lA~~~gis~~~is~~e~G~~~p 49 (94)
T 2kpj_A 25 QLEIAKSIGVSPQTFNTWCKGIAIP 49 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSCCC
T ss_pred HHHHHHHHCcCHHHHHHHHhCCCCC
Confidence 5789999999999999999887643
No 214
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=30.13 E-value=26 Score=23.88 Aligned_cols=24 Identities=8% Similarity=0.059 Sum_probs=21.5
Q ss_pred HHHHHHHhCCCchhhhhhhcchhh
Q psy4078 112 KEQLVEMTNLSPRVIRVWFQNKRC 135 (269)
Q Consensus 112 r~~La~~lgL~~~~V~vWFqNRRa 135 (269)
..+||+.+|++...|..|..+++.
T Consensus 34 q~elA~~~gis~~~is~~e~g~~~ 57 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKID 57 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCGG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 578999999999999999998763
No 215
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=29.43 E-value=56 Score=23.67 Aligned_cols=52 Identities=13% Similarity=0.135 Sum_probs=34.9
Q ss_pred cchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHH
Q psy4078 89 LNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRA 141 (269)
Q Consensus 89 ~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~ 141 (269)
++..+..++.-.|-.+.+ .....+++|..+|++...|+.....-+.+.|+..
T Consensus 20 Lp~reR~Vi~Lry~l~~~-e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~ 71 (99)
T 3t72_q 20 LTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 71 (99)
T ss_pred CCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 556666666666632211 1234678999999999999998876666666544
No 216
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=28.18 E-value=28 Score=23.18 Aligned_cols=24 Identities=13% Similarity=0.088 Sum_probs=21.2
Q ss_pred HHHHHHHhCCCchhhhhhhcchhh
Q psy4078 112 KEQLVEMTNLSPRVIRVWFQNKRC 135 (269)
Q Consensus 112 r~~La~~lgL~~~~V~vWFqNRRa 135 (269)
..+||+.+|++...|..|..+++.
T Consensus 18 q~~lA~~~gis~~~i~~~e~g~~~ 41 (77)
T 2k9q_A 18 AKSVAEEMGISRQQLCNIEQSETA 41 (77)
T ss_dssp HHHHHHHHTSCHHHHHHHHTCCSC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 578999999999999999988754
No 217
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=28.18 E-value=31 Score=23.35 Aligned_cols=24 Identities=13% Similarity=0.173 Sum_probs=21.2
Q ss_pred HHHHHHHhCCCchhhhhhhcchhh
Q psy4078 112 KEQLVEMTNLSPRVIRVWFQNKRC 135 (269)
Q Consensus 112 r~~La~~lgL~~~~V~vWFqNRRa 135 (269)
..+||..+|++...|..|..+++.
T Consensus 28 q~~lA~~~gis~~~i~~~e~g~~~ 51 (88)
T 2wiu_B 28 QSELAKKIGIKQATISNFENNPDN 51 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCGGG
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 578999999999999999988654
No 218
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=27.82 E-value=29 Score=27.45 Aligned_cols=41 Identities=7% Similarity=0.011 Sum_probs=31.1
Q ss_pred hhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhh
Q psy4078 95 HTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCK 136 (269)
Q Consensus 95 ~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak 136 (269)
....+.|.+..|-. ....+||+..|++...|..+|.|+..=
T Consensus 35 ~aa~~lf~~~G~~~-~tv~~IA~~agvs~~t~Y~~F~sK~~L 75 (215)
T 2qko_A 35 NAAIEVLAREGARG-LTFRAVDVEANVPKGTASNYFPSRDDL 75 (215)
T ss_dssp HHHHHHHHHTCTTT-CCHHHHHHHSSSTTTCHHHHCSCHHHH
T ss_pred HHHHHHHHHhChhh-ccHHHHHHHcCCCcchHHHhCCCHHHH
Confidence 34455677777654 457789999999999999999985433
No 219
>1etf_B REV peptide; complex (RNA/peptide), export regulator, mRNA splicing, transcription regulation, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.2.1 PDB: 1etg_B
Probab=27.54 E-value=35 Score=18.91 Aligned_cols=14 Identities=29% Similarity=0.380 Sum_probs=10.8
Q ss_pred cchhhhHHHHHHHH
Q psy4078 131 QNKRCKDKKRALAM 144 (269)
Q Consensus 131 qNRRak~kk~~~~~ 144 (269)
.|||-+|++++.+.
T Consensus 7 RnRRRRWR~Rq~qi 20 (26)
T 1etf_B 7 RNRRRRWRERQRAA 20 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 48899998887654
No 220
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=27.38 E-value=17 Score=28.45 Aligned_cols=27 Identities=15% Similarity=0.112 Sum_probs=20.8
Q ss_pred HHHHHHhCCCchhhhhhhcchhhhHHH
Q psy4078 113 EQLVEMTNLSPRVIRVWFQNKRCKDKK 139 (269)
Q Consensus 113 ~~La~~lgL~~~~V~vWFqNRRak~kk 139 (269)
.++|..+|+++..|+.+...-|.+.|+
T Consensus 155 ~eIA~~lgis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 155 RELAAETGLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp CCSTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 356778899999999988766666654
No 221
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=27.06 E-value=30 Score=23.10 Aligned_cols=24 Identities=21% Similarity=0.080 Sum_probs=21.3
Q ss_pred HHHHHHHhCCCchhhhhhhcchhh
Q psy4078 112 KEQLVEMTNLSPRVIRVWFQNKRC 135 (269)
Q Consensus 112 r~~La~~lgL~~~~V~vWFqNRRa 135 (269)
..+||..+|++...|..|..+++.
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~~ 49 (84)
T 2ef8_A 26 QSELAIFLGLSQSDISKIESFERR 49 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSSC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 578999999999999999988764
No 222
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=26.86 E-value=22 Score=27.46 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=20.5
Q ss_pred HHHHHHHHhCCCchhhhhhhcchh
Q psy4078 111 MKEQLVEMTNLSPRVIRVWFQNKR 134 (269)
Q Consensus 111 ~r~~La~~lgL~~~~V~vWFqNRR 134 (269)
-...+|..+|++..+++.|+-..|
T Consensus 71 ~~~~va~~lg~~~~~~RlW~~~~R 94 (130)
T 2kvr_A 71 FVQSLSQTMGFPQDQIRLWPMQAR 94 (130)
T ss_dssp HHHHHHHHHCCCGGGCEEEECCCC
T ss_pred HHHHHHHHhCCCcccEEEEEeecC
Confidence 357789999999999999997655
No 223
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=26.40 E-value=34 Score=22.60 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=18.4
Q ss_pred HHHHHHHhCCCchhhhhhhcc
Q psy4078 112 KEQLVEMTNLSPRVIRVWFQN 132 (269)
Q Consensus 112 r~~La~~lgL~~~~V~vWFqN 132 (269)
..++|+.||++...|+.|-.+
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTTT
T ss_pred HHHHHHHHCcCHHHHHHHHHC
Confidence 568999999999999999864
No 224
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=26.21 E-value=30 Score=24.00 Aligned_cols=24 Identities=8% Similarity=0.213 Sum_probs=21.1
Q ss_pred HHHHHHHhCCCchhhhhhhcchhh
Q psy4078 112 KEQLVEMTNLSPRVIRVWFQNKRC 135 (269)
Q Consensus 112 r~~La~~lgL~~~~V~vWFqNRRa 135 (269)
..+||+.+|++...|..|..+++.
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~~ 47 (94)
T 2ict_A 24 LREFARAMEIAPSTASRLLTGKAA 47 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTSSC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 578999999999999999988653
No 225
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=25.98 E-value=32 Score=23.08 Aligned_cols=24 Identities=8% Similarity=0.026 Sum_probs=21.2
Q ss_pred HHHHHHHhCCCchhhhhhhcchhh
Q psy4078 112 KEQLVEMTNLSPRVIRVWFQNKRC 135 (269)
Q Consensus 112 r~~La~~lgL~~~~V~vWFqNRRa 135 (269)
..+||..+|++...|..|-.+++.
T Consensus 30 q~elA~~~gis~~~is~~e~g~~~ 53 (83)
T 3f6w_A 30 QKELAARLGRPQSFVSKTENAERR 53 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHCCCCC
Confidence 578999999999999999988754
No 226
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=25.88 E-value=42 Score=27.71 Aligned_cols=46 Identities=13% Similarity=0.232 Sum_probs=33.6
Q ss_pred eecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHH
Q psy4078 87 TVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDK 138 (269)
Q Consensus 87 t~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~k 138 (269)
..++..++.+|.-.++ . ..-+++|..+|+++..|+....|-+.|..
T Consensus 174 ~~Lt~~e~~vl~~~~~--g----~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (236)
T 2q0o_A 174 QMLSPREMLCLVWASK--G----KTASVTANLTGINARTVQHYLDKARAKLD 219 (236)
T ss_dssp GSCCHHHHHHHHHHHT--T----CCHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 4577777777765432 1 23478999999999999998887666554
No 227
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=25.01 E-value=31 Score=22.36 Aligned_cols=19 Identities=11% Similarity=0.340 Sum_probs=17.9
Q ss_pred HHHHHHHhCCCchhhhhhh
Q psy4078 112 KEQLVEMTNLSPRVIRVWF 130 (269)
Q Consensus 112 r~~La~~lgL~~~~V~vWF 130 (269)
..+||+.+|++...|..|.
T Consensus 13 q~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 13 QRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHHHHHHTCCHHHHHHCC
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 5789999999999999999
No 228
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=24.67 E-value=19 Score=28.13 Aligned_cols=40 Identities=8% Similarity=0.077 Sum_probs=32.6
Q ss_pred hhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhh
Q psy4078 95 HTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCK 136 (269)
Q Consensus 95 ~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak 136 (269)
....+.|.+..| . ....+||++.|++...|...|.|+-.=
T Consensus 23 ~aA~~lf~~~G~-~-~s~~~Ia~~agvs~~t~Y~~F~sK~~L 62 (199)
T 2rek_A 23 EAAAAEVARHGA-D-ASLEEIARRAGVGSATLHRHFPSRWGL 62 (199)
T ss_dssp HHHHHHHHHHGG-G-CCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHhcCC-C-CCHHHHHHHhCCchHHHHHHCCCHHHH
Confidence 344566888888 5 578999999999999999999986543
No 229
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=24.45 E-value=35 Score=24.08 Aligned_cols=25 Identities=20% Similarity=0.146 Sum_probs=22.0
Q ss_pred HHHHHHHHhCCCchhhhhhhcchhh
Q psy4078 111 MKEQLVEMTNLSPRVIRVWFQNKRC 135 (269)
Q Consensus 111 ~r~~La~~lgL~~~~V~vWFqNRRa 135 (269)
...+||+.+|++...|..|..+++-
T Consensus 39 Tq~eLA~~~GiS~~tis~iE~G~~~ 63 (88)
T 3t76_A 39 KKGELREAVGVSKSTFAKLGKNENV 63 (88)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCCC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCc
Confidence 3678999999999999999999763
No 230
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=24.02 E-value=16 Score=29.58 Aligned_cols=44 Identities=9% Similarity=0.023 Sum_probs=0.0
Q ss_pred cchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhH
Q psy4078 89 LNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKD 137 (269)
Q Consensus 89 ~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~ 137 (269)
++..+..+|.-.|- ......++|+.+|++...|+.++..-|.+.
T Consensus 199 L~~~~r~vl~l~~~-----~g~s~~EIA~~lgis~~tV~~~~~ra~~~L 242 (243)
T 1l0o_C 199 LDERERLIVYLRYY-----KDQTQSEVASRLGISQVQMSRLEKKILQHI 242 (243)
T ss_dssp -------------------------------------------------
T ss_pred CCHHHHHHHHHHHh-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHc
Confidence 45555566655442 334567899999999999999887555443
No 231
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=23.99 E-value=65 Score=25.12 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=28.3
Q ss_pred eeecchhhhhhhhhhcc-----cCCCCChHHHHHHHHHhCCCc
Q psy4078 86 RTVLNEKQLHTLRTCYN-----ANPRPDALMKEQLVEMTNLSP 123 (269)
Q Consensus 86 Rt~~t~~Ql~~Le~~F~-----~~~~p~~~~r~~La~~lgL~~ 123 (269)
++.||.+|+..|+.+|. .+.+.+..+...+...+|+..
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~ 44 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSP 44 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCC
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCCh
Confidence 35689999999999885 345778887777777777543
No 232
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=23.66 E-value=37 Score=23.25 Aligned_cols=24 Identities=8% Similarity=0.225 Sum_probs=21.2
Q ss_pred HHHHHHHhCCCchhhhhhhcchhh
Q psy4078 112 KEQLVEMTNLSPRVIRVWFQNKRC 135 (269)
Q Consensus 112 r~~La~~lgL~~~~V~vWFqNRRa 135 (269)
..+||..+|++...|..|..+++.
T Consensus 33 q~~lA~~~gis~~~is~~e~g~~~ 56 (92)
T 1lmb_3 33 QESVADKMGMGQSGVGALFNGINA 56 (92)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 578999999999999999988654
No 233
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=23.65 E-value=34 Score=26.16 Aligned_cols=38 Identities=0% Similarity=0.016 Sum_probs=29.9
Q ss_pred hhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhH
Q psy4078 97 LRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKD 137 (269)
Q Consensus 97 Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~ 137 (269)
-.+.|.+. ......+||+..|++...|..+|.|+-.=.
T Consensus 23 A~~lf~~~---~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~ 60 (190)
T 2v57_A 23 AMLVLADH---PTAALGDIAAAAGVGRSTVHRYYPERTDLL 60 (190)
T ss_dssp HHHHHTTC---TTCCHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHc---CCCCHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 34456655 667788999999999999999999965443
No 234
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=23.63 E-value=41 Score=22.35 Aligned_cols=43 Identities=7% Similarity=0.079 Sum_probs=32.2
Q ss_pred eecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhh
Q psy4078 87 TVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCK 136 (269)
Q Consensus 87 t~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak 136 (269)
..++.+.+..+..... ...++||+.+|++...|..|-.+++.-
T Consensus 9 ~~~~g~~lr~~R~~~g-------ltq~elA~~~gvs~~tis~~E~G~~~p 51 (73)
T 3fmy_A 9 ETVAPEFIVKVRKKLS-------LTQKEASEIFGGGVNAFSRYEKGNAXP 51 (73)
T ss_dssp CCCCHHHHHHHHHHTT-------CCHHHHHHHHCSCTTHHHHHHTTSSCC
T ss_pred CCCCHHHHHHHHHHcC-------CCHHHHHHHhCcCHHHHHHHHcCCCCC
Confidence 3567777777765432 235789999999999999999887643
No 235
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=23.54 E-value=27 Score=28.66 Aligned_cols=43 Identities=19% Similarity=0.265 Sum_probs=31.5
Q ss_pred hhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhH
Q psy4078 94 LHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKD 137 (269)
Q Consensus 94 l~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~ 137 (269)
+....+.|.+..|-. ....+||++.|++...|..+|.||..=.
T Consensus 49 l~AA~~lf~~~G~~~-~t~~~IA~~aGvs~~tlY~~F~sK~~L~ 91 (255)
T 3g1o_A 49 LATAENLLEDRPLAD-ISVDDLAKGAGISRPTFYFYFPSKEAVL 91 (255)
T ss_dssp HHHHHHHHTTSCGGG-CCHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHcCCcc-CcHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 334455577766543 4467889999999999999999876443
No 236
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=23.40 E-value=42 Score=28.22 Aligned_cols=48 Identities=19% Similarity=0.140 Sum_probs=33.7
Q ss_pred ecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHHH
Q psy4078 88 VLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRA 141 (269)
Q Consensus 88 ~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~~ 141 (269)
.++..+..+|.-.++ . ..-+++|+.+|+++..|++...+-|.|.|...
T Consensus 197 ~L~~~erevl~L~~~--G----~s~~EIA~~L~iS~~TVk~~l~ra~~kL~~~~ 244 (258)
T 3clo_A 197 ILSEREKEILRCIRK--G----LSSKEIAATLYISVNTVNRHRQNILEKLSVGN 244 (258)
T ss_dssp SSCHHHHHHHHHHHT--T----CCHHHHHHHHTCCHHHHHHHHHHHHHHTTCSS
T ss_pred cCCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 355666666555432 1 23578999999999999999987777766543
No 237
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=23.29 E-value=39 Score=25.19 Aligned_cols=41 Identities=7% Similarity=0.066 Sum_probs=29.1
Q ss_pred cchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhh
Q psy4078 89 LNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCK 136 (269)
Q Consensus 89 ~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak 136 (269)
++.+++..|.+... ....+||..+|++...|..|-.+++.-
T Consensus 71 ~~~~~l~~~R~~~g-------lsq~~la~~~g~s~~~i~~~E~g~~~p 111 (133)
T 3o9x_A 71 VAPEFIVKVRKKLS-------LTQKEASEIFGGGVNAFSRYEKGNAQP 111 (133)
T ss_dssp CCHHHHHHHHHHTT-------CCHHHHHHHHCSCTTHHHHHHHTSSCC
T ss_pred CCHHHHHHHHHHcC-------CCHHHHHHHHCCCHHHHHHHHCCCCCC
Confidence 44555555554332 235689999999999999999887644
No 238
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=23.24 E-value=39 Score=22.62 Aligned_cols=24 Identities=29% Similarity=0.234 Sum_probs=21.0
Q ss_pred HHHHHHHhCCCchhhhhhhcchhh
Q psy4078 112 KEQLVEMTNLSPRVIRVWFQNKRC 135 (269)
Q Consensus 112 r~~La~~lgL~~~~V~vWFqNRRa 135 (269)
..+||..+|++...|..|-.+++.
T Consensus 27 q~~lA~~~gis~~~i~~~e~g~~~ 50 (82)
T 3s8q_A 27 QEDLAYKSNLDRTYISGIERNSRN 50 (82)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCCC
T ss_pred HHHHHHHhCcCHHHHHHHHCCCCC
Confidence 578999999999999999988653
No 239
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=22.66 E-value=41 Score=23.40 Aligned_cols=24 Identities=13% Similarity=0.307 Sum_probs=21.5
Q ss_pred HHHHHHHhCCCchhhhhhhcchhh
Q psy4078 112 KEQLVEMTNLSPRVIRVWFQNKRC 135 (269)
Q Consensus 112 r~~La~~lgL~~~~V~vWFqNRRa 135 (269)
..+||+.+|++...|..|..+++.
T Consensus 20 q~~lA~~~gis~~~is~~e~g~~~ 43 (99)
T 2l49_A 20 RQQLADLTGVPYGTLSYYESGRST 43 (99)
T ss_dssp HHHHHHHHCCCHHHHHHHTTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 578999999999999999998765
No 240
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=22.38 E-value=41 Score=22.59 Aligned_cols=21 Identities=14% Similarity=0.150 Sum_probs=19.5
Q ss_pred HHHHHHHhCCCchhhhhhhcc
Q psy4078 112 KEQLVEMTNLSPRVIRVWFQN 132 (269)
Q Consensus 112 r~~La~~lgL~~~~V~vWFqN 132 (269)
..+||..+|++...|..|-.+
T Consensus 26 q~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 26 LSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 578999999999999999988
No 241
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=22.29 E-value=56 Score=26.89 Aligned_cols=46 Identities=15% Similarity=0.133 Sum_probs=33.1
Q ss_pred eecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHH
Q psy4078 87 TVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDK 138 (269)
Q Consensus 87 t~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~k 138 (269)
..++..++.+|.-.++ ...-.++|..+|+++..|+...+|-+.|..
T Consensus 172 ~~Lt~~e~~vl~~~~~------g~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 217 (234)
T 1l3l_A 172 AWLDPKEATYLRWIAV------GKTMEEIADVEGVKYNSVRVKLREAMKRFD 217 (234)
T ss_dssp CCCCHHHHHHHHHHTT------TCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHc------CCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 4577777777765432 223578999999999999998876665544
No 242
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=22.22 E-value=16 Score=27.78 Aligned_cols=71 Identities=8% Similarity=-0.040 Sum_probs=37.1
Q ss_pred CCcccccCCHHHHHHHHHhhCCCCCCChhhHHHHHHhh-hcccccccccCCCCCCCccceeecchhhhhhhhhhcc
Q psy4078 28 PTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMT-NLFLGRVRKVSGGDGKPTRVRTVLNEKQLHTLRTCYN 102 (269)
Q Consensus 28 ~~r~Rt~~t~~Ql~~L~~~F~~n~~P~~~~re~La~~~-gls~~~i~~~~~~~~k~rr~Rt~~t~~Ql~~Le~~F~ 102 (269)
....|..||.++-+.|....... .. .-..+++.+ |-+..+++..-...-.+...+..+|.++-..|...+.
T Consensus 7 ~~~kk~~WT~eED~~L~~~v~~~--G~--~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~ 78 (126)
T 3osg_A 7 KAAKKQKFTPEEDEMLKRAVAQH--GS--DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQ 78 (126)
T ss_dssp CBCSSCCCCHHHHHHHHHHHHHH--TT--CHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHh--CC--CHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHH
Confidence 34455679999999988776553 22 356667665 3233333221100001112334577777666655543
No 243
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=22.10 E-value=39 Score=23.20 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=21.3
Q ss_pred HHHHHHHhCCCchhhhhhhcchhh
Q psy4078 112 KEQLVEMTNLSPRVIRVWFQNKRC 135 (269)
Q Consensus 112 r~~La~~lgL~~~~V~vWFqNRRa 135 (269)
..+||..+|++...|..|..+++.
T Consensus 29 q~~lA~~~gis~~~is~~e~g~~~ 52 (91)
T 1x57_A 29 QKDLATKINEKPQVIADYESGRAI 52 (91)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 578999999999999999988764
No 244
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=21.93 E-value=80 Score=20.83 Aligned_cols=36 Identities=6% Similarity=0.037 Sum_probs=26.8
Q ss_pred eecchhhhhhhhhhcc-----cCCCCChHHHHHHHHHhCCC
Q psy4078 87 TVLNEKQLHTLRTCYN-----ANPRPDALMKEQLVEMTNLS 122 (269)
Q Consensus 87 t~~t~~Ql~~Le~~F~-----~~~~p~~~~r~~La~~lgL~ 122 (269)
..++.+++..|...|. .+.+.+..+...+...+|..
T Consensus 6 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~ 46 (86)
T 1j7q_A 6 RALGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQT 46 (86)
T ss_dssp CCCSSTHHHHHHHHHHHHSTTTTSCBCHHHHHHHHHHTSCC
T ss_pred ccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcCC
Confidence 3477888888888874 35678888888887777743
No 245
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=21.65 E-value=67 Score=24.60 Aligned_cols=40 Identities=8% Similarity=-0.004 Sum_probs=28.6
Q ss_pred ecchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcc
Q psy4078 88 VLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQN 132 (269)
Q Consensus 88 ~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqN 132 (269)
.++.++...+...+... ....++|..+|++...|..|++.
T Consensus 25 ~~s~e~r~~ii~l~~~G-----~s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 25 PLPEVVRQRIVDLAHQG-----VRPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp SSCHHHHHHHHHHHHHT-----CCHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHH
Confidence 46776665555555432 23567899999999999999964
No 246
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=21.07 E-value=69 Score=24.36 Aligned_cols=38 Identities=13% Similarity=0.218 Sum_probs=30.7
Q ss_pred eeecchhhhhhhhhhcc-----cCCCCChHHHHHHHHHhCCCc
Q psy4078 86 RTVLNEKQLHTLRTCYN-----ANPRPDALMKEQLVEMTNLSP 123 (269)
Q Consensus 86 Rt~~t~~Ql~~Le~~F~-----~~~~p~~~~r~~La~~lgL~~ 123 (269)
|..+|.+|+..|+.+|. .+.+.+..+...+...+|+..
T Consensus 7 ~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~ 49 (153)
T 3i5g_B 7 RVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVP 49 (153)
T ss_dssp CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCC
T ss_pred ccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCc
Confidence 45699999999999985 356888888888888888654
No 247
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=20.92 E-value=50 Score=25.67 Aligned_cols=42 Identities=7% Similarity=0.090 Sum_probs=31.9
Q ss_pred hhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhH
Q psy4078 95 HTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKD 137 (269)
Q Consensus 95 ~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~ 137 (269)
....+.|.+..|-.. ...+||+..|++...|..+|.|+-.=.
T Consensus 21 ~aA~~lf~~~G~~~~-s~~~Ia~~agvs~~t~Y~yF~sKe~L~ 62 (203)
T 3ccy_A 21 ERAAAMFARQGYSET-SIGDIARACECSKSRLYHYFDSKEAVL 62 (203)
T ss_dssp HHHHHHHHHTCTTTS-CHHHHHHHTTCCGGGGTTTCSCHHHHH
T ss_pred HHHHHHHHHcCcccC-CHHHHHHHhCCCcCeeeeeeCCHHHHH
Confidence 344556777777544 467889999999999999999865443
No 248
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=20.90 E-value=32 Score=26.42 Aligned_cols=43 Identities=14% Similarity=0.050 Sum_probs=33.4
Q ss_pred hhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHH
Q psy4078 95 HTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKK 139 (269)
Q Consensus 95 ~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk 139 (269)
..-.+.|.+..|- ....+||++.|++...|...|.||..=...
T Consensus 16 ~aA~~lf~~~G~~--~t~~~IA~~aGvs~~tly~~F~sK~~L~~~ 58 (190)
T 3jsj_A 16 EAAAALTYRDGVG--IGVEALCKAAGVSKRSMYQLFESKDELLAA 58 (190)
T ss_dssp HHHHHHHHHHCTT--CCHHHHHHHHTCCHHHHHHHCSCHHHHHHH
T ss_pred HHHHHHHHHhCcc--ccHHHHHHHhCCCHHHHHHHcCCHHHHHHH
Confidence 4445567777776 668899999999999999999986654443
No 249
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=20.83 E-value=40 Score=23.09 Aligned_cols=21 Identities=19% Similarity=0.445 Sum_probs=17.7
Q ss_pred HHHHHHHHhCCCchhhhhhhc
Q psy4078 111 MKEQLVEMTNLSPRVIRVWFQ 131 (269)
Q Consensus 111 ~r~~La~~lgL~~~~V~vWFq 131 (269)
.+.++|+.+|++.+.|+.|-+
T Consensus 7 ~i~e~A~~~gvs~~tlR~ye~ 27 (81)
T 2jml_A 7 RIRTIARMTGIREATLRAWER 27 (81)
T ss_dssp EHHHHHHTTSTTHHHHHHHHH
T ss_pred cHHHHHHHHCcCHHHHHHHHH
Confidence 356889999999999999953
No 250
>2bnk_A Early protein GP16.7; DNA-binding protein; 2.9A {Bacillus phage PHI29} SCOP: a.251.1.1 PDB: 2c5r_A 1zae_A
Probab=20.20 E-value=92 Score=20.66 Aligned_cols=52 Identities=19% Similarity=0.131 Sum_probs=37.0
Q ss_pred cchhhhhhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhhHHHH
Q psy4078 89 LNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKR 140 (269)
Q Consensus 89 ~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak~kk~ 140 (269)
++.....+|..+=+.+=......+++|..+---++..|..+.-|.|+-||-+
T Consensus 5 ls~~e~~vLDlYe~SnIrIP~DIIEdl~~~~L~te~EVmnYiEnqR~~WKLE 56 (67)
T 2bnk_A 5 LSACEVAVLDLYEQSNIRIPSDIIEDLVNQRLQSEQEVLNYIETQRTYWKLE 56 (67)
T ss_dssp CCSSHHHHHHHHHHTTCCCCHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCcCcHHHHHHHHHHhhhhHHHHHHHHHhhHhHHhhh
Confidence 3444455565544455566677788888555457889999999999999865
No 251
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=20.13 E-value=37 Score=26.42 Aligned_cols=41 Identities=7% Similarity=0.123 Sum_probs=31.5
Q ss_pred hhhhhhcccCCCCChHHHHHHHHHhCCCchhhhhhhcchhhh
Q psy4078 95 HTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCK 136 (269)
Q Consensus 95 ~~Le~~F~~~~~p~~~~r~~La~~lgL~~~~V~vWFqNRRak 136 (269)
....+.|.+..|-. ....+||+..|++...|..+|.++-.=
T Consensus 38 ~aa~~l~~~~G~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~~L 78 (218)
T 3dcf_A 38 KVATELFREKGYYA-TSLDDIADRIGFTKPAIYYYFKSKEDV 78 (218)
T ss_dssp HHHHHHHHHTCTTT-CCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHcCccc-CcHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 34555677777653 447789999999999999999997653
Done!