RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4078
(269 letters)
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 82.6 bits (204), Expect = 3e-21
Identities = 59/65 (90%), Positives = 61/65 (93%)
Query: 81 KPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKR 140
K TRVRTVLNEKQLHTLRTCY ANPRPDALMKEQLVEMT LSPRVIRVWFQNKRCKDKKR
Sbjct: 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61
Query: 141 ALAMK 145
++ MK
Sbjct: 62 SIMMK 66
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 72.5 bits (178), Expect = 2e-17
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 84 RVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRALA 143
R RT ++Q+ L + PD +E+L +L I+VWF N+R K ++
Sbjct: 3 RNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKL 62
Query: 144 MKQQLQ 149
Q+ Q
Sbjct: 63 RNQRRQ 68
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 69.2 bits (169), Expect = 2e-16
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 84 RVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKR 140
R RT QL L + + +L NL I+VWFQN+R KDK++
Sbjct: 1 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 57
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 88
Score = 70.0 bits (171), Expect = 3e-16
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 76 SGGDGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRC 135
G G P+ +RT +QL L ++ N + ++ L+ +++WFQN+R
Sbjct: 21 EPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRM 80
Query: 136 KDKKR 140
K KKR
Sbjct: 81 KQKKR 85
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 68.8 bits (168), Expect = 5e-16
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 81 KPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKR 140
K R RT + QL L + PD +E+L + TNL+ I+VWFQN+R + +K+
Sbjct: 1 KQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQ 60
Query: 141 ALAM 144
++
Sbjct: 61 HTSV 64
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 77
Score = 68.7 bits (168), Expect = 6e-16
Identities = 15/60 (25%), Positives = 27/60 (45%)
Query: 81 KPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKR 140
+ R + Q L + N + ++ + NL+ R +++WFQN+R K KK
Sbjct: 12 STRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKI 71
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 68.3 bits (167), Expect = 6e-16
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 86 RTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKK 139
R Q L ++ N + ++ +L+ R I++WFQN+R K KK
Sbjct: 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKK 54
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 67.7 bits (165), Expect = 1e-15
Identities = 16/66 (24%), Positives = 26/66 (39%)
Query: 82 PTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRA 141
P R RT Q+ L + A L L +++WF+N+R + K ++
Sbjct: 1 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQS 60
Query: 142 LAMKQQ 147
K Q
Sbjct: 61 DQHKDQ 66
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens)
[TaxId: 9606]}
Length = 57
Score = 67.2 bits (164), Expect = 1e-15
Identities = 13/56 (23%), Positives = 25/56 (44%)
Query: 84 RVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKK 139
+ + Q L + +++L +M LS R ++ WFQN+R K ++
Sbjct: 2 GGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR 57
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 67.3 bits (164), Expect = 2e-15
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 84 RVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRALA 143
+ R + ++ Q++ L + A +E L M +L+P +++WFQN R K K++
Sbjct: 4 KRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ--- 60
Query: 144 MKQQLQQE 151
K + Q+
Sbjct: 61 AKDKAAQQ 68
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 66.8 bits (163), Expect = 2e-15
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 84 RVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKK 139
+ R ++ QL L Y AN + ++ T+LS R I +WFQN+R K+KK
Sbjct: 3 KKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 58
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster
[TaxId: 7227]}
Length = 53
Score = 66.0 bits (161), Expect = 3e-15
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 84 RVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCK 136
R RT + +QL L+ +N N ++QL L+ I++WFQN R K
Sbjct: 1 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNARAK 53
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 66.1 bits (161), Expect = 4e-15
Identities = 13/56 (23%), Positives = 24/56 (42%)
Query: 84 RVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKK 139
+ RT QL L + + + +L+ +++WFQN+R K K+
Sbjct: 2 KPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 50
Score = 64.1 bits (156), Expect = 2e-14
Identities = 12/49 (24%), Positives = 20/49 (40%)
Query: 86 RTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKR 134
R V + Q TL + N RP ++ + + L + +F N R
Sbjct: 2 RLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNAR 50
Score = 37.2 bits (86), Expect = 1e-04
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 32 RTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNL 67
R V + Q TL + N RP ++ + + L
Sbjct: 2 RLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGL 37
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 60
Score = 63.8 bits (155), Expect = 3e-14
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 84 RVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKR 140
R RT +QL L + N PD +E++ TNL+ +RVWF+N+R K +KR
Sbjct: 3 RQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKR 59
Score = 33.8 bits (77), Expect = 0.002
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 30 RVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNL 67
R RT +QL L + N PD +E++ TNL
Sbjct: 3 RQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNL 40
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 63.8 bits (155), Expect = 4e-14
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 84 RVRTVLNEKQLHTLRTCYNA---NPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKR 140
R R N++ L + + NP P KE+L + ++ + WF NKR + KK
Sbjct: 3 RKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 62
Query: 141 ALAMKQQ 147
+++
Sbjct: 63 IGKFQEE 69
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 62.6 bits (152), Expect = 6e-14
Identities = 12/53 (22%), Positives = 27/53 (50%)
Query: 86 RTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDK 138
++ ++ + L + ++ KE++ + ++P +RVWF NKR + K
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 53
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 62.2 bits (151), Expect = 9e-14
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 84 RVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKK 139
+ RT ++ L + + +P + ++ E NL V+RVWF N+R ++K+
Sbjct: 1 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKR 56
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 62.0 bits (150), Expect = 2e-13
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 76 SGGDGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRC 135
G K + R + + Q + L + A +E L + L+P +++WFQN R
Sbjct: 3 DGLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRY 62
Query: 136 KDKKRALAMKQQLQQEKDGR 155
K K + Q ++ +G
Sbjct: 63 KTK------RAQNEKGYEGH 76
Score = 33.9 bits (77), Expect = 0.003
Identities = 9/46 (19%), Positives = 16/46 (34%)
Query: 22 SGGDGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNL 67
G K + R + + Q + L + A +E L + L
Sbjct: 3 DGLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRL 48
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 61.9 bits (150), Expect = 2e-13
Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 4/69 (5%)
Query: 76 SGGDGKPTRVRTVLNEKQLHTLRT----CYNANPRPDALMKEQLVEMTNLSPRVIRVWFQ 131
S G R RT +Q + + D + EQ T + +V+++W
Sbjct: 11 SSSGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMH 70
Query: 132 NKRCKDKKR 140
N +
Sbjct: 71 NNKNSGPSS 79
Score = 36.9 bits (85), Expect = 2e-04
Identities = 13/65 (20%), Positives = 20/65 (30%), Gaps = 4/65 (6%)
Query: 13 SRTSSSGKVSGGDGKPTRVRTVLNEKQLHTLRT----CYNANPRPDALMKEQLVEMTNLF 68
S SS S G R RT +Q + + D + EQ T +
Sbjct: 2 SSGSSGSNPSSSGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVR 61
Query: 69 LGRVR 73
++
Sbjct: 62 RQVLK 66
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 59.6 bits (144), Expect = 1e-12
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 84 RVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRA 141
R RT + + +L T + P+P + L V+RVWF N+R K K+ +
Sbjct: 10 RKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRRQKGKRSS 67
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 59.4 bits (144), Expect = 1e-12
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 84 RVRTVLNEKQLHTLRTCYNA---NPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKK 139
R VL + + +R+ +P P K+Q+ TNL+ + WF N R + +
Sbjct: 4 NKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQ 62
Score = 33.6 bits (77), Expect = 0.003
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 30 RVRTVLNEKQLHTLRTCYNA---NPRPDALMKEQLVEMTNLFLGRVR 73
R VL + + +R+ +P P K+Q+ TNL L +V
Sbjct: 4 NKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVN 50
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 58.9 bits (142), Expect = 3e-12
Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 16/80 (20%)
Query: 84 RVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTN---------------LSPRVIRV 128
R ++ L + + +N N PD +E++ N ++ +
Sbjct: 2 GSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYN 61
Query: 129 WFQNKRCKDKKRA-LAMKQQ 147
WF N+R + K+RA +A +
Sbjct: 62 WFANRRKEIKRRANIAAILE 81
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 57.5 bits (139), Expect = 5e-12
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 89 LNEKQLHTLRTCYNAN---PRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKK 139
++ + L + + N P D E L++ T+LS I+ W N+R K+K
Sbjct: 5 FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 56.1 bits (135), Expect = 2e-11
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 86 RTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKK 139
RT + L + N +P + + E N+ VIRVWF N+R K+K+
Sbjct: 2 RTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKR 55
Score = 31.4 bits (71), Expect = 0.013
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 32 RTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNL 67
RT + L + N +P + + E N+
Sbjct: 2 RTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNM 37
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 55.5 bits (134), Expect = 2e-11
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 92 KQLHTLRTCYNA-NPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKK 139
+ L + A PD E L + + R I+ WF+ +R ++K
Sbjct: 3 QPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 51
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 55.8 bits (134), Expect = 3e-11
Identities = 10/72 (13%), Positives = 26/72 (36%), Gaps = 2/72 (2%)
Query: 83 TRVRTVLNEKQLHTLRTCYNANPR-PDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRA 141
+ + E Q+ L +N + PD + L+ + WF+ + + ++
Sbjct: 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61
Query: 142 LAMKQQLQQEKD 153
+ + + D
Sbjct: 62 -GLPSECRSVTD 72
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 53.6 bits (128), Expect = 2e-10
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 76 SGGDGKPTRVRTVLNEKQLHTLRTCY-NANPRPDALMKEQLVEMTNLSPRVIRVWFQNKR 134
SG G R RT ++ + L L++ + PD L +L I +FQN+R
Sbjct: 3 SGSSGP--RSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQR 60
Query: 135 CKDKKR 140
K
Sbjct: 61 YHVKHS 66
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 52.8 bits (127), Expect = 2e-10
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 84 RVRTVLNEKQLHTLRTCYNANPR-PDALMKEQLVEMTNLSPRVIRVWFQNKRCKDK 138
+ V + TL + + + PD + L + + S R I+ WF+++R +DK
Sbjct: 3 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 58
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 49.0 bits (116), Expect = 1e-08
Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 3/74 (4%)
Query: 77 GGDGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCK 136
G G + +T ++QL L++ + ++L ++T L I WF + R
Sbjct: 1 GSSGSSGKRKT---KEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYA 57
Query: 137 DKKRALAMKQQLQQ 150
K L +
Sbjct: 58 LKHGQLKWFRDNAS 71
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat
(Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 47.9 bits (113), Expect = 3e-08
Identities = 14/76 (18%), Positives = 21/76 (27%), Gaps = 21/76 (27%)
Query: 86 RTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTN---------------------LSPR 124
R L Y P +E LVE N ++
Sbjct: 1 RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEV 60
Query: 125 VIRVWFQNKRCKDKKR 140
+ WF N+R ++ R
Sbjct: 61 RVYNWFANRRKEEAFR 76
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 47.4 bits (112), Expect = 4e-08
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Query: 79 DGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDK 138
D P + + +QL L+ + + +L T L+ R I WF K+
Sbjct: 2 DFTPQKFKE-KTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKA 60
Query: 139 KRALAMKQQ 147
+ M+
Sbjct: 61 LKEEKMEID 69
>d2fi2a1 a.28.3.2 (A:37-128) Zinc finger protein 42 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 92
Score = 36.7 bits (85), Expect = 3e-04
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 106 RPDALMKEQLVEMTNLS------PRVIRVWFQNKRCKDKKRALAMKQQLQQEKDG 154
RP+ KEQ++E+ L P I+ Q +R + A A+ L++E G
Sbjct: 38 RPEVRSKEQMLELLVLEQFLGALPPEIQARVQGQRPGSPEEAAALVDGLRREPGG 92
>d1y7qa1 a.28.3.2 (A:37-132) Zinc finger protein 174 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 96
Score = 36.3 bits (84), Expect = 6e-04
Identities = 9/57 (15%), Positives = 23/57 (40%), Gaps = 6/57 (10%)
Query: 106 RPDALMKEQLVEMTNLS------PRVIRVWFQNKRCKDKKRALAMKQQLQQEKDGRK 156
+P+ KEQ++E+ + P I+ +++ K + + + + K
Sbjct: 40 QPELHTKEQILELLVMEQFLTILPEEIQARVRHRCLMSSKEIVTLVEDFHRASKKPK 96
>d1r73a_ a.2.2.1 (A:) Ribosomal protein L29 (L29p) {Thermotoga
maritima [TaxId: 2336]}
Length = 66
Score = 27.6 bits (62), Expect = 0.35
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 11/49 (22%)
Query: 57 MKEQLVEM-TNLFLGRVRKVSGGDGKPTRVR----------TVLNEKQL 94
+K L E L R + G + ++ T+L E++L
Sbjct: 14 LKNLLEEKKRQLMELRFQLAMGQLKNTSLIKLTKRDIARIKTILREREL 62
Score = 24.1 bits (53), Expect = 5.5
Identities = 5/11 (45%), Positives = 10/11 (90%)
Query: 30 RVRTVLNEKQL 40
R++T+L E++L
Sbjct: 52 RIKTILREREL 62
>d2zjrv1 a.2.2.1 (V:1-66) Ribosomal protein L29 (L29p)
{Deinococcus radiodurans [TaxId: 1299]}
Length = 66
Score = 26.9 bits (60), Expect = 0.60
Identities = 7/49 (14%), Positives = 15/49 (30%), Gaps = 11/49 (22%)
Query: 57 MKEQLVEM-TNLFLGRVRKVSGGDGKPT----------RVRTVLNEKQL 94
+++ L R + +G +P ++ TV E
Sbjct: 14 FAKEIDARKKELMELRFQAAAGQLAQPHRVRQLRREVAQLNTVKAELAR 62
>d2gycw1 a.2.2.1 (W:1-60) Ribosomal protein L29 (L29p)
{Escherichia coli [TaxId: 562]}
Length = 60
Score = 25.3 bits (56), Expect = 1.8
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 11/47 (23%)
Query: 57 MKEQLVEM-TNLFLGRVRKVSGGDGKPT----------RVRTVLNEK 92
+ +L+ + F R++ SG + RV+T+LNEK
Sbjct: 14 LNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLNEK 60
>d1bd0a1 b.49.2.2 (A:2-11,A:245-382) Alanine racemase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 148
Score = 26.4 bits (58), Expect = 2.8
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 118 MTNLSPRVIRVWFQNKR 134
+S RV R++F++KR
Sbjct: 123 PCTISYRVPRIFFRHKR 139
>d2okua1 a.48.5.1 (A:443-564) Uncharacterized protein PG0775
{Porphyromonas gingivalis [TaxId: 837]}
Length = 122
Score = 26.0 bits (57), Expect = 3.0
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 31 VRTVLNEKQLHTLRTCYNANP-RPD-ALMKEQLVEMTNLFLGRVRKV 75
+R + + +R Y +P+ MKE L MT+ + V
Sbjct: 6 IRHITTGTYIARIREEYQQTEVKPELQPMKEALARMTDRAEALIAFV 52
>d1ia9a_ d.144.1.5 (A:) Trp Ca-channel kinase domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 278
Score = 26.8 bits (59), Expect = 3.1
Identities = 8/63 (12%), Positives = 15/63 (23%), Gaps = 9/63 (14%)
Query: 84 RVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTNLSPRVIRVWFQNKRCKDKKRALA 143
V L + + + + NL I+ + C R L
Sbjct: 218 GVGENLTDPSVIKAEEKRSCDMVFG---------PANLGEDAIKNFRAKHHCNSCCRKLK 268
Query: 144 MKQ 146
+
Sbjct: 269 LPD 271
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 25.1 bits (55), Expect = 8.6
Identities = 7/35 (20%), Positives = 19/35 (54%)
Query: 126 IRVWFQNKRCKDKKRALAMKQQLQQEKDGRKMGYG 160
+ +FQ ++ + K+ K+Q++ E++ + Y
Sbjct: 97 MFDYFQLQKEQKKQLTSQEKKQIRLEREKFEEDYK 131
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 25.1 bits (55), Expect = 8.7
Identities = 6/35 (17%), Positives = 17/35 (48%)
Query: 126 IRVWFQNKRCKDKKRALAMKQQLQQEKDGRKMGYG 160
+ +F+ + K+ + K ++++E + YG
Sbjct: 105 MSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYG 139
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.131 0.390
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 993,121
Number of extensions: 45167
Number of successful extensions: 163
Number of sequences better than 10.0: 1
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 69
Length of query: 269
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 185
Effective length of database: 1,254,276
Effective search space: 232041060
Effective search space used: 232041060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.0 bits)