Query psy4079
Match_columns 294
No_of_seqs 232 out of 1459
Neff 7.5
Searched_HMMs 29240
Date Sat Aug 17 00:47:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4079.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4079hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qq8_A TBC1 domain family memb 100.0 9.5E-44 3.3E-48 331.6 8.5 243 35-286 22-309 (334)
2 3hzj_A Rabgap1L, RAB GTPase-ac 100.0 2.2E-43 7.5E-48 325.8 10.2 225 57-286 26-275 (310)
3 3qye_A TBC1 domain family memb 100.0 1.4E-41 4.6E-46 316.4 16.4 207 62-272 58-287 (331)
4 2qfz_A TBC1 domain family memb 100.0 6.5E-39 2.2E-43 300.0 13.3 206 62-276 49-315 (345)
5 4hl4_A TBC1 domain family memb 100.0 3.2E-39 1.1E-43 295.7 9.8 217 63-283 47-283 (292)
6 1fkm_A Protein (GYP1P), ORF YO 100.0 9.8E-38 3.4E-42 297.2 15.6 205 62-275 32-360 (396)
7 3qwl_A TBC1 domain family memb 100.0 1.5E-30 5.3E-35 238.0 8.4 202 62-277 49-271 (294)
8 3j21_i 50S ribosomal protein L 36.3 11 0.00036 27.2 0.8 24 20-45 39-63 (83)
9 3iz5_m 60S ribosomal protein L 31.7 14 0.00048 27.1 0.8 24 20-45 40-64 (92)
10 3jyw_9 60S ribosomal protein L 28.9 12 0.0004 26.2 -0.0 25 20-46 30-55 (72)
11 3izc_m 60S ribosomal protein R 28.1 16 0.00056 26.7 0.7 24 20-45 40-64 (92)
12 4a17_Y RPL37A, 60S ribosomal p 26.1 17 0.00058 27.2 0.4 23 20-44 40-63 (103)
13 1rmk_A MU-O-conotoxin mrvib; b 21.9 20 0.0007 20.4 0.1 12 13-24 16-27 (31)
14 2e2s_A Agelenin; cystine knot, 20.1 20 0.0007 21.0 -0.1 10 34-43 27-36 (36)
No 1
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=100.00 E-value=9.5e-44 Score=331.61 Aligned_cols=243 Identities=19% Similarity=0.306 Sum_probs=195.2
Q ss_pred EEeccccccCCcchhhhhcCCCcceee-cCCCCCccc-chHHHHhhhhCCCcc---------------------------
Q psy4079 35 CIVGSKCAGNWPKQAIVFLNLPVESRV-VGCPSKSAG-NWPKQAIVFLNLPVE--------------------------- 85 (294)
Q Consensus 35 ~~~~~~~~~~w~~~~~~~~~~~~~sr~-~GIP~~lRg-vW~~L~~~~~~~~~~--------------------------- 85 (294)
..|.++++.+|.+-.- ...+..+. +|||+.+|| +|+.++|+..+...+
T Consensus 22 ~~W~~~il~~w~~~~~---~~~lr~l~~~GIP~~lR~~vW~~llg~~~~~~~~~y~~ll~~~~~~~~~~~~~~~~~~~~d 98 (334)
T 2qq8_A 22 LTWNNEILPNWETMWC---SRKVRDLWWQGIPPSVRGKVWSLAIGNELNITHELFDICLARAKERWRSLSTGGSEVENED 98 (334)
T ss_dssp HHHHHTTGGGCC--CC---CHHHHHHHHTCCCHHHHHHHHHHHHCCTTCCCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHhHHhccC---hHHHHHHHHCCCCHHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHhccccccCcccc
Confidence 4577778888875211 11123333 999999999 999999874321110
Q ss_pred --------cccccccc-cccCCCCCcchhcccCCCCchhHHHHHHHhhhHhhh---cCccccCchHHHHHhccCCCHHHH
Q psy4079 86 --------SRVVGCPS-KSAGNWPKQAIVFLNLPVDSGVVVNALDFGSGGWWF---ESNYCQGTGMIAASLLLLMEEEEA 153 (294)
Q Consensus 86 --------~~~~~~i~-dv~Rtfp~~~~f~~~~~~~~~~~~~~l~l~~i~~~~---~iGY~QGM~~Iaa~LL~~~~E~~a 153 (294)
.+..++|+ |+.||||++.+|..+ +...+.++.++.+|+. ++|||||||+|||+||++++|++|
T Consensus 99 ~~~~~~~~~~~~~~I~~Dv~RT~p~~~~F~~~-----~~~~~~L~rIL~aya~~~p~vgY~QGm~~iaa~lLl~~~E~~a 173 (334)
T 2qq8_A 99 AGFSAADREASLELIKLDISRTFPNLCIFQQG-----GPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLDTADA 173 (334)
T ss_dssp --------CCHHHHHHHHHHTSSGGGCSSSTT-----STTHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHSCHHHH
T ss_pred cccccccchhHHHHHHHHHhhcCCCchhhcCC-----CchHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHhcCCHHHH
Confidence 12335676 999999999999753 1233444455555544 999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCCCCCCchhhHHhHHHHHHHHHhhChHHHHHHhhCCcchhHhHHHHHHHHhccCCCHHHHHHHHHH
Q psy4079 154 FWTLSAIVEDLLPASYYTPNLIGIQADQKVLRSLVASGLPQLELSLLQHDIELSLITLHWFLTLFASVVHFKILLRIWDL 233 (294)
Q Consensus 154 F~~~~~l~~~~~~~~~f~~~~~~l~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~WfltlF~~~~p~~~vlriWD~ 233 (294)
||||+++|+++.++++|.++.++++..+..++.+++..+|+|++||++.|+++.+|+.+||+|+|++++|++.++||||.
T Consensus 174 F~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~ 253 (334)
T 2qq8_A 174 FIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDV 253 (334)
T ss_dssp HHHHHHHHTSHHHHHHHSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHhccCCChHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHH
Confidence 99999999987666789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHHhHHHhhCCCCHHHHHhhhcccc----chhhhhhhcCCC
Q psy4079 234 LFLDGSMVLFQITLGMLKIKDTIYIVLSSPIAITMGTCVYQ----LRGLVYMETNMF 286 (294)
Q Consensus 234 ~l~eG~~~l~~ialAiL~~~k~~Ll~~~d~~~il~~l~~~~----~~~~~~~~~~~~ 286 (294)
++++|.++++++|+|+|+.++++|+++ |.+++++.++..+ .+.+......+.
T Consensus 254 ~l~eg~~~l~~valaiL~~~~~~Ll~~-d~~~il~~L~~lp~~~d~~~l~~~a~~l~ 309 (334)
T 2qq8_A 254 FCRDGEEFLFRTALGILKLFEDILTKM-DFIHMAQFLTRLPEDLPAEELFASIATIQ 309 (334)
T ss_dssp HHHHCHHHHHHHHHHHHHHTHHHHHTC-CHHHHHHHHHSCCTTCCHHHHHHHHHHCC
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHhCCCcCCHHHHHHHHHHcc
Confidence 999999999999999999999999998 4677777776543 445555544443
No 2
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.2e-43 Score=325.79 Aligned_cols=225 Identities=24% Similarity=0.302 Sum_probs=189.0
Q ss_pred cceee-cCCCCCccc-chHHHHhhhhC----------CCcccccccccc-cccCCCCCcchhcccCCCCchhHHHHHHHh
Q psy4079 57 VESRV-VGCPSKSAG-NWPKQAIVFLN----------LPVESRVVGCPS-KSAGNWPKQAIVFLNLPVDSGVVVNALDFG 123 (294)
Q Consensus 57 ~~sr~-~GIP~~lRg-vW~~L~~~~~~----------~~~~~~~~~~i~-dv~Rtfp~~~~f~~~~~~~~~~~~~~l~l~ 123 (294)
+..++ +|||+.+|| +|+.++|...+ ....+...++|. |+.||+|++.+|..+.+ .+...++.+
T Consensus 26 l~~l~~~GIP~~lR~~vW~~llg~~~~~~~~~~Y~~l~~~~~~~~~~I~~Dv~Rt~p~~~~f~~~~~----~~~~~L~~I 101 (310)
T 3hzj_A 26 LSTLVKSGVPEALRAEVWQLLAGCHDNQAMLDRYRILITKDSAQESVITRDIHRTFPAHDYFKDTGG----DGQESLYKI 101 (310)
T ss_dssp HHHHHHHCCCGGGHHHHHHHHTTCCCCHHHHHHHHHHTTSCCTTHHHHHHHHTTSSTTSTTTSSTTS----HHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHCCCcchhHHHHHHHHHhccCCcHHHHHHHHHhhCCCchhhcCCCc----hhHHHHHHH
Confidence 34444 999999999 99999987321 112233445676 99999999999976532 344445455
Q ss_pred hhHhhh---cCccccCchHHHHHhccCCCHHHHHHHHHHHHhccCCCCCCCCCchhhHHhHHHHHHHHHhhChHHHHHHh
Q psy4079 124 SGGWWF---ESNYCQGTGMIAASLLLLMEEEEAFWTLSAIVEDLLPASYYTPNLIGIQADQKVLRSLVASGLPQLELSLL 200 (294)
Q Consensus 124 ~i~~~~---~iGY~QGM~~Iaa~LL~~~~E~~aF~~~~~l~~~~~~~~~f~~~~~~l~~~~~~~~~ll~~~~P~L~~hL~ 200 (294)
+.+++. ++|||||||+|||+||++++|++|||||+++|+++..+++|.++.++++..+..++.+++.++|+|++||+
T Consensus 102 L~ay~~~~p~igY~QGm~~iaa~lL~~~~e~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p~L~~hL~ 181 (310)
T 3hzj_A 102 CKAYSVYDEDIGYCQGQSFLAAVLLLHMPEEQAFCVLVKIMYDYGLRDLYRNNFEDLHCKFYQLERLMQEQLPDLHSHFS 181 (310)
T ss_dssp HHHHHHHCTTTCSCTTHHHHHHHHHHHSCHHHHHHHHHHHHHTSCGGGGTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHCCCCCccCCHHHHHHHHHHhCCHHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence 555544 99999999999999999999999999999999998777999999999999999999999999999999999
Q ss_pred hCCcchhHhHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhHHHhhCCCCHHHHHhhhccc-------
Q psy4079 201 QHDIELSLITLHWFLTLFASVVHFKILLRIWDLLFLDGSMVLFQITLGMLKIKDTIYIVLSSPIAITMGTCVY------- 273 (294)
Q Consensus 201 ~~~i~~~~~~~~WfltlF~~~~p~~~vlriWD~~l~eG~~~l~~ialAiL~~~k~~Ll~~~d~~~il~~l~~~------- 273 (294)
+.|+++..|+.+||+|+|++.+|++.++||||.++++|.++++++++|+|..++++|+++ |.++++..++..
T Consensus 182 ~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~~~l~~v~lail~~~~~~Ll~~-d~~~~l~~l~~~lp~~~~~ 260 (310)
T 3hzj_A 182 DLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNIIFHVALALLKTSKEDLLQA-DFEGALKFFRVQLPKRYRA 260 (310)
T ss_dssp HHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTC-CHHHHHHHHHTHHHHTTCS
T ss_pred HcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHhCcccccc
Confidence 999999999999999999999999999999999999999999999999999999999998 788888777531
Q ss_pred --cchhhhhhhcCCC
Q psy4079 274 --QLRGLVYMETNMF 286 (294)
Q Consensus 274 --~~~~~~~~~~~~~ 286 (294)
+.+.++....++.
T Consensus 261 ~~d~~~ll~~A~~l~ 275 (310)
T 3hzj_A 261 EENARRLMEQACNIK 275 (310)
T ss_dssp HHHHHHHHHHHHHSC
T ss_pred cccHHHHHHHHHhcC
Confidence 3445555555443
No 3
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=100.00 E-value=1.4e-41 Score=316.39 Aligned_cols=207 Identities=27% Similarity=0.356 Sum_probs=181.4
Q ss_pred cCCCCCccc-chHHHHhhhhC----------CCcc--------cccccccc-cccCCCCCcchhcccCCCCchhHHHHHH
Q psy4079 62 VGCPSKSAG-NWPKQAIVFLN----------LPVE--------SRVVGCPS-KSAGNWPKQAIVFLNLPVDSGVVVNALD 121 (294)
Q Consensus 62 ~GIP~~lRg-vW~~L~~~~~~----------~~~~--------~~~~~~i~-dv~Rtfp~~~~f~~~~~~~~~~~~~~l~ 121 (294)
+|||+.+|+ +|+.++|.... .... .....+|. |+.||+|++.+|..+.+ .+...++
T Consensus 58 ~GIP~~lR~~vW~~Llg~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~----~~~~~L~ 133 (331)
T 3qye_A 58 QGVPRHHRGEIWKFLAEQFHLKHQFPSKQQPKDVPYKELLKQLTSQQHAILIDLGRTFPTHPYFSAQLG----AGQLSLY 133 (331)
T ss_dssp TCCCGGGHHHHHHHHHHHHHHHCCCCSSSCCCCCCHHHHTTSCCTTHHHHHHHHTTSSTTSTTTCSTTC----HHHHHHH
T ss_pred cCCCHHHHHHHHHHHhCcchhhhcchhhhhhchHHHHHHHHhcCCchhHHHHhhcccCCCchhhcCCCc----ccHHHHH
Confidence 899999999 99999998430 0011 12234565 99999999999977533 3344444
Q ss_pred HhhhHhhh---cCccccCchHHHHHhccCCCHHHHHHHHHHHHhccCCCCCCCCCchhhHHhHHHHHHHHHhhChHHHHH
Q psy4079 122 FGSGGWWF---ESNYCQGTGMIAASLLLLMEEEEAFWTLSAIVEDLLPASYYTPNLIGIQADQKVLRSLVASGLPQLELS 198 (294)
Q Consensus 122 l~~i~~~~---~iGY~QGM~~Iaa~LL~~~~E~~aF~~~~~l~~~~~~~~~f~~~~~~l~~~~~~~~~ll~~~~P~L~~h 198 (294)
.++.+++. ++|||||||+|||+||++++|++|||||.++|+++..+++|.++.++++..+..++.+++.++|+|++|
T Consensus 134 ~IL~ay~~~~p~igY~QGm~~i~a~ll~~~~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p~L~~h 213 (331)
T 3qye_A 134 NILKAYSLLDQEVGYCQGLSFVAGILLLHMSEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYHRDLYNH 213 (331)
T ss_dssp HHHHHHHHHCTTTSSCTTHHHHHHHHHTTSCHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHCCCccccccHHHHHHHHHHHhhHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555544 999999999999999999999999999999999987778999999999999999999999999999999
Q ss_pred HhhCCcchhHhHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhHHHhhCCCCHHHHHhhhcc
Q psy4079 199 LLQHDIELSLITLHWFLTLFASVVHFKILLRIWDLLFLDGSMVLFQITLGMLKIKDTIYIVLSSPIAITMGTCV 272 (294)
Q Consensus 199 L~~~~i~~~~~~~~WfltlF~~~~p~~~vlriWD~~l~eG~~~l~~ialAiL~~~k~~Ll~~~d~~~il~~l~~ 272 (294)
|++.|+++.+|+.+||+|+|++.+|++.++||||.++++|.++++++++|+|+.++++|++++|.+++++.++.
T Consensus 214 L~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~ 287 (331)
T 3qye_A 214 LEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKS 287 (331)
T ss_dssp HHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHH
T ss_pred HHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988765
No 4
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=100.00 E-value=6.5e-39 Score=299.97 Aligned_cols=206 Identities=17% Similarity=0.228 Sum_probs=176.1
Q ss_pred cCCCCCccc-chHHHHhhhhCCC----------------------------cccccccccc-cccCCCCCcchhcccCCC
Q psy4079 62 VGCPSKSAG-NWPKQAIVFLNLP----------------------------VESRVVGCPS-KSAGNWPKQAIVFLNLPV 111 (294)
Q Consensus 62 ~GIP~~lRg-vW~~L~~~~~~~~----------------------------~~~~~~~~i~-dv~Rtfp~~~~f~~~~~~ 111 (294)
+|||+.+|+ +|+.++|+.-... ...+...+|. |+.||+|+ .+|..
T Consensus 49 ~GiP~~~R~~vW~~llg~~p~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~I~~Dv~RT~p~-~~F~~---- 123 (345)
T 2qfz_A 49 SGIPKPVRPMTWKLLSGYLPANVDRRPATLQRKQKEYFAFIEHYYDSRNDEVHQDTYRQIHIDIPRMSPE-ALILQ---- 123 (345)
T ss_dssp TCCCGGGHHHHHHHHTTSSCSBGGGHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHGGGCSCH-HHHTS----
T ss_pred CCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHhCcccCCc-cccCC----
Confidence 899999999 9999998631100 0112445676 99999999 88865
Q ss_pred CchhHHHHHHHhhhHhhh---cCccccCchHHHHHhccCC-------------------------CHHHHHHHHHHHHhc
Q psy4079 112 DSGVVVNALDFGSGGWWF---ESNYCQGTGMIAASLLLLM-------------------------EEEEAFWTLSAIVED 163 (294)
Q Consensus 112 ~~~~~~~~l~l~~i~~~~---~iGY~QGM~~Iaa~LL~~~-------------------------~E~~aF~~~~~l~~~ 163 (294)
...++.+++++.+|+. ++|||||||+|||+|++++ +|++|||||+++|++
T Consensus 124 --~~~~~~L~rIL~~ya~~~p~vgY~QGm~~i~a~ll~v~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~ 201 (345)
T 2qfz_A 124 --PKVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCMSKLLDG 201 (345)
T ss_dssp --HHHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHGGGCC-----CCCCTTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred --chHHHHHHHHHHHHHHHCCCCCcccChHHHHHHHHHHHHhhhcccccccccchhhhhhhhhhhHHHHHHHHHHHHHHc
Confidence 2344555555555554 9999999999999998754 289999999999998
Q ss_pred cCCCCCCCCCchhhHHhHHHHHHHHHhhChHHHHHHhhCCcchhHhHHHHHHHHhccCCCHHHHHHHHHHHHHcCCh---
Q psy4079 164 LLPASYYTPNLIGIQADQKVLRSLVASGLPQLELSLLQHDIELSLITLHWFLTLFASVVHFKILLRIWDLLFLDGSM--- 240 (294)
Q Consensus 164 ~~~~~~f~~~~~~l~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~WfltlF~~~~p~~~vlriWD~~l~eG~~--- 240 (294)
+ +++|.++.++++..+..++.+++.++|+|++||++.|+++..|+.+||+++|++++|++.++||||.++++|.+
T Consensus 202 ~--~~~y~~~~~~i~~~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~ 279 (345)
T 2qfz_A 202 I--QDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSH 279 (345)
T ss_dssp S--GGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTT
T ss_pred c--ccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhH
Confidence 7 47899999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred HHHHHHHHHHHHhHHHhhCCCCHHHHHhhhccccch
Q psy4079 241 VLFQITLGMLKIKDTIYIVLSSPIAITMGTCVYQLR 276 (294)
Q Consensus 241 ~l~~ialAiL~~~k~~Ll~~~d~~~il~~l~~~~~~ 276 (294)
+++++++|+|...+++|++..|.+++++.++..+..
T Consensus 280 ~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~~~p~~ 315 (345)
T 2qfz_A 280 FHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLPTA 315 (345)
T ss_dssp HHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTSCSCT
T ss_pred HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCCc
Confidence 789999999999999999989999999888776543
No 5
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=100.00 E-value=3.2e-39 Score=295.72 Aligned_cols=217 Identities=14% Similarity=0.132 Sum_probs=176.2
Q ss_pred CCCCCccc-chHHHHhhhhCCCcc---------cccccccc-cccCCCCCcchhcccCCCCchhHHHHHHHhhhHhhh--
Q psy4079 63 GCPSKSAG-NWPKQAIVFLNLPVE---------SRVVGCPS-KSAGNWPKQAIVFLNLPVDSGVVVNALDFGSGGWWF-- 129 (294)
Q Consensus 63 GIP~~lRg-vW~~L~~~~~~~~~~---------~~~~~~i~-dv~Rtfp~~~~f~~~~~~~~~~~~~~l~l~~i~~~~-- 129 (294)
++|+.+|+ +|+.++|+....... .+..++|. |+.||+|++..|..+ ...+..+..+..+..+|+.
T Consensus 47 ~~p~~lR~~vW~~Llg~~~~~~~~~~~~~~~~~~~~~~qI~~Dv~RT~~~~~~~~~~--~~~~~~~~~L~~iL~ay~~~~ 124 (292)
T 4hl4_A 47 LLTDEIRRKVWPKLLNVNANDPPPISGKNLRQMSKDYQQVLLDVRRSLRRFPPGMPE--EQREGLQEELIDIILLILERN 124 (292)
T ss_dssp SCCHHHHHHHHHHHTTCCSCSCCSCCCTTHHHHCTTHHHHHHHHHTTGGGSCTTSCH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred CCChhHHHHHHHHHhCCCcccCCCchhhhhcccchhHHHHHHhhhhhhhhccCCCCH--HHHHHHHHHHHHHHHHHHHHC
Confidence 38999999 999999985432211 34455676 999999998876432 1123334444444444443
Q ss_pred -cCccccCchHHHHHhccCCCHHHHHHHHHHHHhccCCCCCCCCCchhhHHhHHHHHHHHHhhChHHHHHHhhCCcchhH
Q psy4079 130 -ESNYCQGTGMIAASLLLLMEEEEAFWTLSAIVEDLLPASYYTPNLIGIQADQKVLRSLVASGLPQLELSLLQHDIELSL 208 (294)
Q Consensus 130 -~iGY~QGM~~Iaa~LL~~~~E~~aF~~~~~l~~~~~~~~~f~~~~~~l~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~ 208 (294)
++|||||||+|||+||++++|++|||||.+++++..+ +||.+++++++..+..++.+++..+|+|++||++.++ ..+
T Consensus 125 p~vgY~QGm~~iaa~lLl~~~e~~aF~~l~~l~~~~l~-~~~~~~~~~~~~~~~~l~~ll~~~~P~L~~hL~~~~i-~~~ 202 (292)
T 4hl4_A 125 PQLHYYQGYHDIVVTFLLVVGERLATSLVEKLSTHHLR-DFMDPTMDNTKHILNYLMPIIDQVNPELHDFMQSAEV-GTI 202 (292)
T ss_dssp TTCCCCTTHHHHHHHHHHHHCHHHHHHHHHHHHHTTTT-GGGCSSSCTTTGGGGGHHHHHHHHCHHHHHHHC-CCC-CSG
T ss_pred CCCCeeccHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HhcccchHHHHHHHHHHHHHHHHHCHHHHHHHHHcCC-Ccc
Confidence 9999999999999999999999999999999998665 8999999999999999999999999999999999999 579
Q ss_pred hHHHHHHHHhccCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhHHHhhCCC-CHHHHHhhhcc----ccchhhhhhh
Q psy4079 209 ITLHWFLTLFASVVH-FKILLRIWDLLFLDGSMVLFQITLGMLKIKDTIYIVLS-SPIAITMGTCV----YQLRGLVYME 282 (294)
Q Consensus 209 ~~~~WfltlF~~~~p-~~~vlriWD~~l~eG~~~l~~ialAiL~~~k~~Ll~~~-d~~~il~~l~~----~~~~~~~~~~ 282 (294)
|+.+||+|+|++++| ++.++||||.++++|..+++++++|++...+++|++++ +.+.+...++. .+++.++...
T Consensus 203 ~~~~W~ltlF~~~l~~~~~~~rlWD~~l~~g~~~~~~v~~ail~~~~~~Ll~~~~d~~~l~~~l~~lp~~~d~~~li~~A 282 (292)
T 4hl4_A 203 FALSWLITWFGHVLSDFRHVVRLYDFFLACHPLMPIYFAAVIVLYREQEVLDCDCDMASVHHLLSQIPQDLPYETLISRA 282 (292)
T ss_dssp GGHHHHHTTTTTTSCCHHHHHHHHHHHHHSCTTHHHHHHHHHHHHTHHHHHTSCCSTTHHHHHHHSCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHhhhcCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 999999999999986 99999999999999999999999999999999999984 55555555543 4455555544
Q ss_pred c
Q psy4079 283 T 283 (294)
Q Consensus 283 ~ 283 (294)
.
T Consensus 283 ~ 283 (292)
T 4hl4_A 283 G 283 (292)
T ss_dssp H
T ss_pred H
Confidence 4
No 6
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=100.00 E-value=9.8e-38 Score=297.19 Aligned_cols=205 Identities=16% Similarity=0.177 Sum_probs=174.7
Q ss_pred cCCCCCccc-chHHHHhhhhCCC---------------------------cccccccccc-cccCCCCCcchhcccCCCC
Q psy4079 62 VGCPSKSAG-NWPKQAIVFLNLP---------------------------VESRVVGCPS-KSAGNWPKQAIVFLNLPVD 112 (294)
Q Consensus 62 ~GIP~~lRg-vW~~L~~~~~~~~---------------------------~~~~~~~~i~-dv~Rtfp~~~~f~~~~~~~ 112 (294)
+|||+.+|+ +|+.++|+.-... .+.+...+|. |+.||+|++.+|..
T Consensus 32 ~GIP~~lR~~vW~~LLg~~~~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~~~~~~~~qI~~Dv~RT~p~~~~F~~----- 106 (396)
T 1fkm_A 32 NGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSDQHSRDIPTWHQIEIDIPRTNPHIPLYQF----- 106 (396)
T ss_dssp TCCCGGGHHHHHHHHTTCSCSBGGGHHHHHHHHHHHHHHHHHHTSSSSCSTHHHHHHHHHHHGGGSSTTSGGGGS-----
T ss_pred cCCCHHHHHHHHHHHHCCCCCChhHHHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHhhhhCCCcccccC-----
Confidence 799999999 9999998731100 1122345676 99999999999975
Q ss_pred chhHHHHHHHhhhHhhh---cCccccCchHHHHHhccC----------------------CC-------HHHHHHHHHHH
Q psy4079 113 SGVVVNALDFGSGGWWF---ESNYCQGTGMIAASLLLL----------------------ME-------EEEAFWTLSAI 160 (294)
Q Consensus 113 ~~~~~~~l~l~~i~~~~---~iGY~QGM~~Iaa~LL~~----------------------~~-------E~~aF~~~~~l 160 (294)
..+++.+++++.+|+. ++|||||||+|+|+||++ ++ |++|||||+++
T Consensus 107 -~~~~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~l 185 (396)
T 1fkm_A 107 -KSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKL 185 (396)
T ss_dssp -HHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHHHHHHHH
T ss_pred -chHHHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhccccccccccccchhhccchhhhhhhHHHHHHHHHHH
Confidence 3455555555555554 999999999999999874 33 99999999999
Q ss_pred HhccCCCCCCCCCchhhHHhHHHHHHHHHhhChHHHHHHhhCCcchhHhHHHHHHHHhccCCCHHHHHHHHHHHHHcC--
Q psy4079 161 VEDLLPASYYTPNLIGIQADQKVLRSLVASGLPQLELSLLQHDIELSLITLHWFLTLFASVVHFKILLRIWDLLFLDG-- 238 (294)
Q Consensus 161 ~~~~~~~~~f~~~~~~l~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~WfltlF~~~~p~~~vlriWD~~l~eG-- 238 (294)
|++. +++|.++.+++...+..++.+++..+|+|++||++.|+++.+|+.+||+++|++++|++.++||||.++++|
T Consensus 186 m~~~--~~~f~~~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~LF~~~~p~~~vlrlWD~~l~eg~~ 263 (396)
T 1fkm_A 186 LEQI--TDNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSETSQ 263 (396)
T ss_dssp HGGG--GGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHHHHHHC-
T ss_pred HHHH--HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHCCCc
Confidence 9986 478999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred -------------------------------------------------C------------hHHHHHHHHHHHHhHHHh
Q psy4079 239 -------------------------------------------------S------------MVLFQITLGMLKIKDTIY 257 (294)
Q Consensus 239 -------------------------------------------------~------------~~l~~ialAiL~~~k~~L 257 (294)
. .+++++++|+|...|++|
T Consensus 264 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~AlL~~~r~~L 343 (396)
T 1fkm_A 264 EVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSGKMRQSSLNEFHVFVCAAFLIKWSDQL 343 (396)
T ss_dssp -----------------------------------------------------------CHHHHHHHHHHHHHHHTHHHH
T ss_pred cccchhhhhcccccCCccccccccccccccccccccccccccccccccccccchhccccchHHHHHHHHHHHHHHHHHHH
Confidence 2 689999999999999999
Q ss_pred hCCCCHHHHHhhhccccc
Q psy4079 258 IVLSSPIAITMGTCVYQL 275 (294)
Q Consensus 258 l~~~d~~~il~~l~~~~~ 275 (294)
+++ |.+++++.++.++.
T Consensus 344 l~~-df~~~l~~L~~~p~ 360 (396)
T 1fkm_A 344 MEM-DFQETITFLQNPPT 360 (396)
T ss_dssp TTC-CHHHHHHHHTSCSC
T ss_pred Hhc-CHHHHHHHHhcCCC
Confidence 985 56788888887764
No 7
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=99.96 E-value=1.5e-30 Score=238.02 Aligned_cols=202 Identities=15% Similarity=0.105 Sum_probs=154.0
Q ss_pred cC-CCCCccc-chHHHHhhhh-CCCccc-----------c---cccccccccCCCCCcchhcccCCCCchhHHHHHHHhh
Q psy4079 62 VG-CPSKSAG-NWPKQAIVFL-NLPVES-----------R---VVGCPSKSAGNWPKQAIVFLNLPVDSGVVVNALDFGS 124 (294)
Q Consensus 62 ~G-IP~~lRg-vW~~L~~~~~-~~~~~~-----------~---~~~~i~dv~Rtfp~~~~f~~~~~~~~~~~~~~l~l~~ 124 (294)
+| ||+.+|+ +|+.|+|+.- +.++.. . ..+.++++.+..|.+..|-.... +....
T Consensus 49 ~g~IP~~~R~~vWklLlGylP~~~~~~~~~l~~kr~eY~~l~~~~~~~r~I~~~tP~~~vfl~~~~---------~~~~~ 119 (294)
T 3qwl_A 49 RFPLPSMYRALVWKVLLGILPPHHESHAKVMMYRKEQYLDVLHALKVVRFVSDATPQAEVYLRMYQ---------LESGK 119 (294)
T ss_dssp HSCCCHHHHHHHHHHHTTSSCSBGGGHHHHHHHHHHHHHHHHHHHHHTTSCCTTSCHHHHHHHHHH---------HHHTC
T ss_pred CCCCCHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCchHHHHHHHHH---------ccccc
Confidence 77 9999999 9999999821 111110 0 01122244444555444433110 00000
Q ss_pred hHhhhcC---ccccCchHHHHHhccC-CCHHHHHHHHHHHHhccCCCCCCCCCchhhHHhHHHHHHHHHhhChHHHHHHh
Q psy4079 125 GGWWFES---NYCQGTGMIAASLLLL-MEEEEAFWTLSAIVEDLLPASYYTPNLIGIQADQKVLRSLVASGLPQLELSLL 200 (294)
Q Consensus 125 i~~~~~i---GY~QGM~~Iaa~LL~~-~~E~~aF~~~~~l~~~~~~~~~f~~~~~~l~~~~~~~~~ll~~~~P~L~~hL~ 200 (294)
....+++ .++|||+.|||++++. .+|+||||||+++|++.. ++|.++.++++.. ++.+++..+|+|++||+
T Consensus 120 l~~~~~~~~~~~~~~~~~Iaa~ll~l~~~E~dAFW~f~~Lm~~l~--~~f~~~~~gl~~~---l~~LL~~~dP~L~~HL~ 194 (294)
T 3qwl_A 120 LPRSPSFPLEPDDEVFLAIAKAMEEMVEDSVDCYWITRRFVNQLN--TKYRDSLPQLPKA---FEQYLNLEDGRLLTHLR 194 (294)
T ss_dssp CCSSTTSCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH--TTTTTTGGGHHHH---HHHHHHHHCHHHHHHHH
T ss_pred ccccccCCcccchhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH--HhhCCChhHHHHH---HHHHHHHHHHHHHHHHH
Confidence 0011222 2459999999999864 589999999999999853 7899999998865 48999999999999999
Q ss_pred hCCcchhHhHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhHHHhhCCCCHHHHHhhhccccchh
Q psy4079 201 QHDIELSLITLHWFLTLFASVVHFKILLRIWDLLFLDGSMVLFQITLGMLKIKDTIYIVLSSPIAITMGTCVYQLRG 277 (294)
Q Consensus 201 ~~~i~~~~~~~~WfltlF~~~~p~~~vlriWD~~l~eG~~~l~~ialAiL~~~k~~Ll~~~d~~~il~~l~~~~~~~ 277 (294)
+.|+.+.+++.+||+++|++++|++.++||||.++++|.++++++|+|+|+.+++.|+++++.+++++.++..+..+
T Consensus 195 ~~~i~~~~~~~rWfl~lF~~~~p~~~vlRlWD~~~~~~~~~l~~valAiL~~~r~~Ll~~~~~~~il~~Lq~lp~~d 271 (294)
T 3qwl_A 195 MCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVVSGSCKILVFVAVEILLTFKIKVMALNSAEKITKFLENIPQDS 271 (294)
T ss_dssp HTTCGGGSCHHHHHTSTTTTTSCHHHHHHHHHHHHTTCSTHHHHHHHHHHHHTHHHHHHCCSHHHHHHHHTTCCSTT
T ss_pred HCCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCccc
Confidence 99999888888999999999999999999999999999999999999999999999999999899887777655443
No 8
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=36.31 E-value=11 Score=27.19 Aligned_cols=24 Identities=33% Similarity=0.685 Sum_probs=17.1
Q ss_pred ccccCccceeeeeEEEEec-cccccCC
Q psy4079 20 QFCGNSSFMKRVSLVCIVG-SKCAGNW 45 (294)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~-~~~~~~w 45 (294)
.|||.. -|+|++ |-||. +||-..+
T Consensus 39 pfCGk~-~vkR~a-~GIW~C~kCg~~~ 63 (83)
T 3j21_i 39 PVCGRK-AVKRIS-TGIWQCQKCGATF 63 (83)
T ss_dssp SSSCSS-CEEEEE-TTEEEETTTCCEE
T ss_pred CCCCCc-eeEecC-cCeEEcCCCCCEE
Confidence 599987 489988 78885 5554433
No 9
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=31.73 E-value=14 Score=27.09 Aligned_cols=24 Identities=38% Similarity=0.648 Sum_probs=16.9
Q ss_pred ccccCccceeeeeEEEEec-cccccCC
Q psy4079 20 QFCGNSSFMKRVSLVCIVG-SKCAGNW 45 (294)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~-~~~~~~w 45 (294)
.|||.. -|+|++ |-||. ++|-..+
T Consensus 40 pfCgk~-~vkR~a-~GIW~C~~Cg~~~ 64 (92)
T 3iz5_m 40 EFCGKF-AVKRKA-VGIWGCKDCGKVK 64 (92)
T ss_dssp TTTCSS-CBEEEE-TTEEECSSSCCEE
T ss_pred cccCCC-eeEecC-cceEEcCCCCCEE
Confidence 599987 489988 78885 4554333
No 10
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=28.90 E-value=12 Score=26.24 Aligned_cols=25 Identities=32% Similarity=0.498 Sum_probs=17.5
Q ss_pred ccccCccceeeeeEEEEec-cccccCCc
Q psy4079 20 QFCGNSSFMKRVSLVCIVG-SKCAGNWP 46 (294)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~-~~~~~~w~ 46 (294)
.|||.. -|+|++ |-||. +||-..+.
T Consensus 30 ~fCgk~-~vkR~a-~GIW~C~~C~~~~A 55 (72)
T 3jyw_9 30 SFCGKK-TVKRGA-AGIWTCSCCKKTVA 55 (72)
T ss_dssp SSCCSS-CBSBCS-SSCBCCSSSCCCCC
T ss_pred CCCCCc-eeEecC-CCeEECCCCCCEEe
Confidence 599966 589988 77885 55654444
No 11
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=28.13 E-value=16 Score=26.70 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=16.6
Q ss_pred ccccCccceeeeeEEEEec-cccccCC
Q psy4079 20 QFCGNSSFMKRVSLVCIVG-SKCAGNW 45 (294)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~-~~~~~~w 45 (294)
.|||.. -|+|++ |-||. ++|-..+
T Consensus 40 pfCgk~-~vkR~a-~GIW~C~~C~~~~ 64 (92)
T 3izc_m 40 SFCGKK-TVKRGA-AGIWTCSCCKKTV 64 (92)
T ss_dssp SSSCSS-CCEEEE-TTEEECTTTCCEE
T ss_pred CCCCCc-eeeecc-cceEEcCCCCCEE
Confidence 599966 589988 77885 5554333
No 12
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=26.06 E-value=17 Score=27.18 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=16.2
Q ss_pred ccccCccceeeeeEEEEec-cccccC
Q psy4079 20 QFCGNSSFMKRVSLVCIVG-SKCAGN 44 (294)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~-~~~~~~ 44 (294)
.|||.. -|+|++ |-||. ++|-..
T Consensus 40 pfCgk~-~vKR~a-~GIW~C~kCg~~ 63 (103)
T 4a17_Y 40 PFCGKV-AVKRAA-VGIWKCKPCKKI 63 (103)
T ss_dssp TTTCCE-EEEEEE-TTEEEETTTTEE
T ss_pred CCCCCc-eeeecC-cceEEcCCCCCE
Confidence 599976 489988 67885 555433
No 13
>1rmk_A MU-O-conotoxin mrvib; beta sheet, cystine knot; NMR {Conus marmoreus} SCOP: g.3.6.1
Probab=21.88 E-value=20 Score=20.35 Aligned_cols=12 Identities=42% Similarity=1.226 Sum_probs=10.6
Q ss_pred ehhhcccccccC
Q psy4079 13 FIYQCTAQFCGN 24 (294)
Q Consensus 13 ~~~~~~~~~~~~ 24 (294)
|||-|+.+.||-
T Consensus 16 ~i~CC~GLIC~~ 27 (31)
T 1rmk_A 16 FVYCCPGLICGP 27 (31)
T ss_dssp CCEESTTCCBCS
T ss_pred EEEecCCceEee
Confidence 789999999984
No 14
>2e2s_A Agelenin; cystine knot, presynaptic calcium channel inhibitor, toxin; NMR {Allagelena opulenta}
Probab=20.13 E-value=20 Score=21.05 Aligned_cols=10 Identities=30% Similarity=0.594 Sum_probs=7.7
Q ss_pred EEEecccccc
Q psy4079 34 VCIVGSKCAG 43 (294)
Q Consensus 34 ~~~~~~~~~~ 43 (294)
.+||.|||++
T Consensus 27 L~iW~s~cl~ 36 (36)
T 2e2s_A 27 LSIWDSRCLX 36 (36)
T ss_dssp EETTEEEEC-
T ss_pred eeeehhhhcC
Confidence 5789999975
Done!