RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy4079
         (294 letters)



>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p. Probable
           Rab-GAPs.  Widespread domain present in Gyp6 and Gyp7,
           thereby giving rise to the notion that it performs a
           GTP-activator activity on Rab-like GTPases.
          Length = 216

 Score =  119 bits (301), Expect = 8e-33
 Identities = 57/132 (43%), Positives = 78/132 (59%), Gaps = 2/132 (1%)

Query: 128 WFESNYCQGTGMIAASLLLLME-EEEAFWTLSAIVEDLLPASYYTPNLIGIQADQKVLRS 186
             E  YCQG   +AA LLL+ME EE+AFW L  ++E   P ++Y P++ G+Q D   L  
Sbjct: 86  NPEVGYCQGMNFLAAPLLLVMEDEEDAFWCLVKLMERYGP-NFYLPDMSGLQLDLLQLDR 144

Query: 187 LVASGLPQLELSLLQHDIELSLITLHWFLTLFASVVHFKILLRIWDLLFLDGSMVLFQIT 246
           LV    P L   L    I  SL  L WFLTLFA  +  +I+LRIWD+LF +GS  LF++ 
Sbjct: 145 LVKEYDPDLYKHLKDLGITPSLYALRWFLTLFARELPLEIVLRIWDVLFAEGSDFLFRVA 204

Query: 247 LGMLKIKDTIYI 258
           L +LK+   + +
Sbjct: 205 LALLKLHRDVLL 216


>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain.  Identification of a
           TBC domain in GYP6_YEAST and GYP7_YEAST, which are
           GTPase activator proteins of yeast Ypt6 and Ypt7,
           implies that these domains are GTPase activator proteins
           of Rab-like small GTPases.
          Length = 206

 Score =  116 bits (293), Expect = 1e-31
 Identities = 48/124 (38%), Positives = 71/124 (57%), Gaps = 2/124 (1%)

Query: 130 ESNYCQGTGMIAASLLLL-MEEEEAFWTLSAIVEDLLPASYYTPNLIGIQADQKVLRSLV 188
           +  YCQG   IAA LLL+ ++EEEAFW   +++E LL   ++ P+  G+Q D  V   L+
Sbjct: 78  DVGYCQGMNFIAAPLLLVVLDEEEAFWCFVSLLEYLLR-DFFLPSFPGLQRDLYVFEELL 136

Query: 189 ASGLPQLELSLLQHDIELSLITLHWFLTLFASVVHFKILLRIWDLLFLDGSMVLFQITLG 248
               P+L   L +  ++ SL    WFLTLFA  +  + +LR+WDL    G   LF++ L 
Sbjct: 137 KKHDPELYKHLQKLGLDPSLFASKWFLTLFARELPLETVLRLWDLFLEGGKFFLFRVALA 196

Query: 249 MLKI 252
           +LK 
Sbjct: 197 ILKR 200


>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function
           prediction only].
          Length = 496

 Score =  106 bits (267), Expect = 4e-26
 Identities = 53/125 (42%), Positives = 72/125 (57%), Gaps = 1/125 (0%)

Query: 129 FESNYCQGTGMIAASLLLLMEEEE-AFWTLSAIVEDLLPASYYTPNLIGIQADQKVLRSL 187
            E  Y QG   +AA LLL++E EE AFW L  ++++     Y+  NL G+  D KVL  L
Sbjct: 297 PEVGYVQGMNFLAAPLLLVLESEEQAFWCLVKLLKNYGLPGYFLKNLSGLHRDLKVLDDL 356

Query: 188 VASGLPQLELSLLQHDIELSLITLHWFLTLFASVVHFKILLRIWDLLFLDGSMVLFQITL 247
           V    P+L   LL+  + L +    WFLTLF      +  LRIWD LFL+GS +LFQ+ L
Sbjct: 357 VEELDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQLAL 416

Query: 248 GMLKI 252
            +LK+
Sbjct: 417 AILKL 421


>gnl|CDD|192528 pfam10307, DUF2410, Hypothetical protein (DUF2410).  This is a
           family of proteins conserved in fungi. The function is
           not known.There are two characteristic sequence motifs,
           GGWW and TGR.
          Length = 200

 Score = 28.8 bits (65), Expect = 2.3
 Identities = 10/40 (25%), Positives = 13/40 (32%), Gaps = 9/40 (22%)

Query: 99  WPKQAIVFLNLPVDSGVVVNALDFGSGGWWFESNYCQGTG 138
           W    I  L          +   F +GGWW +      TG
Sbjct: 10  WNGPTIGLL---------QSPESFANGGWWHDPRILAATG 40


>gnl|CDD|184835 PRK14822, PRK14822, nucleoside-triphosphatase; Provisional.
          Length = 200

 Score = 27.9 bits (63), Expect = 4.6
 Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 3/19 (15%)

Query: 106 FLNLPV---DSGVVVNALD 121
            LN PV   DSG+ V+AL+
Sbjct: 61  ALNKPVIADDSGLEVDALN 79


>gnl|CDD|239323 cd03025, DsbA_FrnE_like, DsbA family, FrnE-like subfamily; composed
           of uncharacterized proteins containing a CXXC motif with
           similarity to DsbA and FrnE. FrnE is presumed to be a
           thiol oxidoreductase involved in polyketide
           biosynthesis, specifically in the production of the
           aromatic antibiotics frenolicin and nanaomycins.
          Length = 193

 Score = 27.3 bits (61), Expect = 7.2
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 4/42 (9%)

Query: 177 IQADQKVLRSLVASGLPQLELSLLQHDIELSLITL-HWFLTL 217
           IQ DQK+ R L  +G P L   +L+ D    ++   ++    
Sbjct: 155 IQEDQKLARELGINGFPTL---VLEDDNGEGILLTGYYPYEP 193


>gnl|CDD|235397 PRK05301, PRK05301, pyrroloquinoline quinone biosynthesis protein
           PqqE; Provisional.
          Length = 378

 Score = 27.9 bits (63), Expect = 7.7
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)

Query: 169 YYTPNLI--GIQADQKVLRSLVASGLPQLELSLLQHDIELS 207
            YT NLI  G+   +  L +L  +GL  ++LS    D EL+
Sbjct: 91  LYT-NLITSGVGLTEARLAALKDAGLDHIQLSFQDSDPELN 130


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.325    0.139    0.439 

Gapped
Lambda     K      H
   0.267   0.0731    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,696,370
Number of extensions: 1423609
Number of successful extensions: 1291
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1286
Number of HSP's successfully gapped: 14
Length of query: 294
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 198
Effective length of database: 6,679,618
Effective search space: 1322564364
Effective search space used: 1322564364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (26.5 bits)