RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4079
         (294 letters)



>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 188

 Score = 66.0 bits (160), Expect = 1e-13
 Identities = 15/107 (14%), Positives = 24/107 (22%)

Query: 176 GIQADQKVLRSLVASGLPQLELSLLQHDIELSLITLHWFLTLFASVVHFKILLRIWDLLF 235
           GI    K L  LV      L        +E       W   L         ++R+WD   
Sbjct: 4   GILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYL 63

Query: 236 LDGSMVLFQITLGMLKIKDTIYIVLSSPIAITMGTCVYQLRGLVYME 282
            + S  +                     +A  +            + 
Sbjct: 64  SETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALS 110


>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 194

 Score = 32.9 bits (74), Expect = 0.025
 Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 1/52 (1%)

Query: 130 ESNYCQGTGMIAASLLLLMEEEEAFWTLSAIVEDLLPASYYTP-NLIGIQAD 180
            S Y QG   +          E    +    VE   P++Y     +  ++AD
Sbjct: 125 ASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEAD 176


>d1rlja_ c.23.5.7 (A:) Flavoprotein NrdI {Bacillus subtilis [TaxId:
           1423]}
          Length = 135

 Score = 28.8 bits (64), Expect = 0.35
 Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 4/60 (6%)

Query: 85  ESRVVGCPSKSAGNWPKQAIVFLNLPVDSGVVVNALDFGSGGWWFESNYCQGTGMIAASL 144
              V+   + + G  P     FL       + V      SG   +  N+ +    I+   
Sbjct: 45  TPFVLVTYTTNFGQVPASTQSFLEKYAHLLLGV----AASGNKVWGDNFAKSADTISRQY 100


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.139    0.439 

Gapped
Lambda     K      H
   0.267   0.0618    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,106,890
Number of extensions: 49961
Number of successful extensions: 104
Number of sequences better than 10.0: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 8
Length of query: 294
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 209
Effective length of database: 1,240,546
Effective search space: 259274114
Effective search space used: 259274114
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.0 bits)