Query psy408
Match_columns 132
No_of_seqs 105 out of 922
Neff 6.6
Searched_HMMs 29240
Date Sat Aug 17 00:48:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy408.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/408hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h8d_A Myosin-VI; myosin VI, m 44.4 2.9 9.9E-05 29.4 -1.1 21 18-38 25-45 (141)
2 1kf6_D Fumarate reductase 13 k 19.9 15 0.0005 25.3 -0.9 13 7-19 77-89 (119)
3 3j21_L 50S ribosomal protein L 19.3 55 0.0019 22.9 2.0 21 12-32 42-64 (147)
4 2byg_A Channel associated prot 18.4 25 0.00086 22.9 0.0 14 14-27 4-18 (117)
5 3l4f_D SH3 and multiple ankyri 14.7 47 0.0016 22.1 0.6 18 10-27 4-23 (132)
6 3b76_A E3 ubiquitin-protein li 13.2 41 0.0014 22.0 0.0 17 11-27 2-18 (118)
7 4alg_A Bromodomain-containing 11.5 50 0.0017 23.0 0.0 19 9-27 3-21 (154)
8 3mao_A Methionine-R-sulfoxide 9.6 64 0.0022 21.5 -0.0 10 116-125 87-96 (105)
9 3b1s_A Flagellar biosynthetic 12.8 65 0.0022 18.7 0.0 11 17-27 14-24 (52)
10 2vt1_A Surface presentation of 9.5 66 0.0022 18.7 0.0 11 17-27 14-24 (52)
No 1
>3h8d_A Myosin-VI; myosin VI, myosin 6, DAB2, cargo binding, protein-peptide complex, actin-binding, ATP-binding, calmodulin-binding; 2.20A {Mus musculus} PDB: 2kia_A
Probab=44.44 E-value=2.9 Score=29.44 Aligned_cols=21 Identities=33% Similarity=0.752 Sum_probs=17.8
Q ss_pred CCCCCCCCCCcCChhhhhhhh
Q psy408 18 SETDADPHNSKRGFFFAHVGW 38 (132)
Q Consensus 18 sD~~~DPhsp~rGf~~sH~gW 38 (132)
+|+..+|.++++|.||+|+-=
T Consensus 25 ~~~~k~~~~~k~G~WYAHFdG 45 (141)
T 3h8d_A 25 ADQYKDPQNKKKGWWYAHFDG 45 (141)
T ss_dssp GGTTSCGGGCCEEEEEEEEET
T ss_pred cccccCCCCcccceEEEeeCC
Confidence 567788888999999999963
No 2
>1kf6_D Fumarate reductase 13 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_D* 1l0v_D* 2b76_D* 3cir_D* 3p4p_D* 3p4q_D* 3p4r_D* 3p4s_D*
Probab=19.89 E-value=15 Score=25.27 Aligned_cols=13 Identities=38% Similarity=0.907 Sum_probs=9.0
Q ss_pred cccchhcccCCCC
Q psy408 7 WVRDHRVHHKYSE 19 (132)
Q Consensus 7 W~~~HR~HH~~sD 19 (132)
|.+.||.||.--|
T Consensus 77 Wh~~HRihh~lHD 89 (119)
T 1kf6_D 77 WCGLHRMHHAMHD 89 (119)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhh
Confidence 6677777776555
No 3
>3j21_L 50S ribosomal protein L15P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=19.34 E-value=55 Score=22.90 Aligned_cols=21 Identities=43% Similarity=0.465 Sum_probs=14.2
Q ss_pred hcccCCCCCC--CCCCCCcCChh
Q psy408 12 RVHHKYSETD--ADPHNSKRGFF 32 (132)
Q Consensus 12 R~HH~~sD~~--~DPhsp~rGf~ 32 (132)
|+||..+..+ ..-|-|++||=
T Consensus 42 ~~~H~~~~~~ky~p~~~pK~GF~ 64 (147)
T 3j21_L 42 RNKSKWTWTIKYAPDHLGKRGFS 64 (147)
T ss_dssp SSSSSSSCSSSSCSCCSCCCSCC
T ss_pred cCcccEEEEeecCCCcCCcCCCC
Confidence 4777777543 33388999984
No 4
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=18.37 E-value=25 Score=22.89 Aligned_cols=14 Identities=36% Similarity=0.420 Sum_probs=0.0
Q ss_pred ccCCC-CCCCCCCCC
Q psy408 14 HHKYS-ETDADPHNS 27 (132)
Q Consensus 14 HH~~s-D~~~DPhsp 27 (132)
||.++ +.+.||||-
T Consensus 4 ~~~~~~~~~~dp~s~ 18 (117)
T 2byg_A 4 HHHHSSGVDLGTENL 18 (117)
T ss_dssp ---------------
T ss_pred cccccCccCCCCccc
Confidence 34444 468999996
No 5
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=14.69 E-value=47 Score=22.11 Aligned_cols=18 Identities=17% Similarity=0.333 Sum_probs=4.5
Q ss_pred chhcccCCCC--CCCCCCCC
Q psy408 10 DHRVHHKYSE--TDADPHNS 27 (132)
Q Consensus 10 ~HR~HH~~sD--~~~DPhsp 27 (132)
.|-.||.+.+ ...||||+
T Consensus 4 ~~~~~~~~~~~~~~~~~~s~ 23 (132)
T 3l4f_D 4 SHHHHHHSQDPLVPRGSGSD 23 (132)
T ss_dssp ---------------CCSCC
T ss_pred chhhhhhhcCCCccCCCCCC
Confidence 4556666666 37899998
No 6
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}
Probab=13.20 E-value=41 Score=22.01 Aligned_cols=17 Identities=35% Similarity=0.442 Sum_probs=0.7
Q ss_pred hhcccCCCCCCCCCCCC
Q psy408 11 HRVHHKYSETDADPHNS 27 (132)
Q Consensus 11 HR~HH~~sD~~~DPhsp 27 (132)
|..||.-+..+.||+|.
T Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (118)
T 3b76_A 2 HHHHHHSSGVDLGTENL 18 (118)
T ss_dssp ----------------C
T ss_pred CcCCccccCCCCCcccc
Confidence 44555556789999986
No 7
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=11.53 E-value=50 Score=22.96 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=0.0
Q ss_pred cchhcccCCCCCCCCCCCC
Q psy408 9 RDHRVHHKYSETDADPHNS 27 (132)
Q Consensus 9 ~~HR~HH~~sD~~~DPhsp 27 (132)
+.|..||.-.|.|+||..|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~ 21 (154)
T 4alg_A 3 SHHHHHHSSGLVPRGSHMS 21 (154)
T ss_dssp -------------------
T ss_pred cccccccccCCCCCCCCCC
Confidence 4566667767889998876
No 8
>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}
Probab=9.57 E-value=64 Score=21.53 Aligned_cols=10 Identities=10% Similarity=0.292 Sum_probs=7.1
Q ss_pred hhhhhhhhhc
Q psy408 116 WAVNSAAHIW 125 (132)
Q Consensus 116 ~~VNS~~H~~ 125 (132)
+||||++=.|
T Consensus 87 yCiNS~sL~F 96 (105)
T 3mao_A 87 FSIFSSSLKF 96 (105)
T ss_dssp EEECGGGEEE
T ss_pred EeeCeeeEEe
Confidence 5899987543
No 9
>3b1s_A Flagellar biosynthetic protein FLHB; type III secretion system, protein transport, MEMB protein; 2.55A {Aquifex aeolicus}
Probab=12.84 E-value=65 Score=18.74 Aligned_cols=11 Identities=18% Similarity=0.540 Sum_probs=7.0
Q ss_pred CCCCCCCCCCC
Q psy408 17 YSETDADPHNS 27 (132)
Q Consensus 17 ~sD~~~DPhsp 27 (132)
+-+++|||+=-
T Consensus 14 ~Ke~EGdP~iK 24 (52)
T 3b1s_A 14 YKQLEGHPEVK 24 (52)
Confidence 44677887753
No 10
>2vt1_A Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=9.46 E-value=66 Score=18.72 Aligned_cols=11 Identities=18% Similarity=0.317 Sum_probs=0.0
Q ss_pred CCCCCCCCCCC
Q psy408 17 YSETDADPHNS 27 (132)
Q Consensus 17 ~sD~~~DPhsp 27 (132)
+-+++|||+=-
T Consensus 14 ~Ke~EGdP~iK 24 (52)
T 2vt1_A 14 YIEQEGHFETK 24 (52)
T ss_dssp -----------
T ss_pred HHhccCCHHHH
Confidence 44677888743
Done!