Query psy408
Match_columns 132
No_of_seqs 105 out of 922
Neff 6.6
Searched_HMMs 13730
Date Sat Aug 17 00:48:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy408.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/408hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kf6d_ f.21.2.2 (D:) Fumarate 25.4 4.6 0.00033 26.2 -0.9 13 7-19 77-89 (119)
2 d1k8ua_ a.39.1.2 (A:) Calcycli 13.4 12 0.00088 22.2 -1.0 52 15-69 16-71 (89)
3 d2epra1 g.37.1.1 (A:350-384) P 12.5 28 0.002 17.2 0.5 17 10-26 19-35 (35)
4 d1dx5i2 g.3.11.1 (I:388-422) T 12.1 21 0.0015 17.8 -0.1 8 21-28 11-18 (35)
5 d3cr5x1 a.39.1.2 (X:0-89) Calc 9.3 24 0.0017 21.1 -0.6 53 15-69 16-73 (90)
6 d1wmha_ d.15.2.2 (A:) Protein 9.2 26 0.0019 21.0 -0.4 12 16-27 45-56 (83)
7 d1xk4c1 a.39.1.2 (C:4-86) Calc 8.9 25 0.0018 20.7 -0.6 53 15-69 17-75 (83)
8 d1ksoa_ a.39.1.2 (A:) Calcycli 8.4 27 0.002 20.6 -0.6 53 15-69 16-73 (93)
9 d1l1da_ b.88.1.3 (A:) C-termin 8.3 36 0.0026 22.2 -0.0 9 116-124 117-125 (144)
10 d1xm0a1 b.88.1.3 (A:1-143) Pep 7.8 40 0.0029 22.0 0.0 10 116-125 114-123 (143)
No 1
>d1kf6d_ f.21.2.2 (D:) Fumarate reductase subunit FrdD {Escherichia coli [TaxId: 562]}
Probab=25.43 E-value=4.6 Score=26.16 Aligned_cols=13 Identities=38% Similarity=0.907 Sum_probs=9.0
Q ss_pred cccchhcccCCCC
Q psy408 7 WVRDHRVHHKYSE 19 (132)
Q Consensus 7 W~~~HR~HH~~sD 19 (132)
|.+.||.||.--|
T Consensus 77 Wh~~HRihHglHD 89 (119)
T d1kf6d_ 77 WCGLHRMHHAMHD 89 (119)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 6777888776544
No 2
>d1k8ua_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a6 [TaxId: 9606]}
Probab=13.39 E-value=12 Score=22.21 Aligned_cols=52 Identities=23% Similarity=0.376 Sum_probs=26.8
Q ss_pred cCCCCCCCCCCCCc----CChhhhhhhhcccccChhHHhhccccCcccCCCCceEEEeh
Q psy408 15 HKYSETDADPHNSK----RGFFFAHVGWLMCRKHKDVIEKGRMVDMSDVMADPLVRFHE 69 (132)
Q Consensus 15 H~~sD~~~DPhsp~----rGf~~sH~gWl~~~~~~~~~~~~~~~~~~Dl~~dp~~~~~~ 69 (132)
|+|+|+++|..+-. +-++=+-.. ...+..++..++ -+..-|.-.|.-+-|.+
T Consensus 16 ~kya~~dg~~~~ls~~Elk~Ll~~e~~-~~~~~~~~~~~~--~~~~lD~d~Dg~IdF~E 71 (89)
T d1k8ua_ 16 HKYSGREGDKHTLSKKELKELIQKELT-IGSKLQDAEIAR--LMEDLDRNKDQEVNFQE 71 (89)
T ss_dssp HHHHTSSSCTTEEEHHHHHHHHHHHSC-CGGGTTSHHHHH--HHHHHHHTTTCEEEHHH
T ss_pred HHHcccCCCCCeecHHHHHHHHHHHHH-hhccCCHHHHHH--HHHHhcCCCCCCCcHHH
Confidence 78899999998653 222222111 111222221111 12234677888888887
No 3
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.49 E-value=28 Score=17.20 Aligned_cols=17 Identities=29% Similarity=0.385 Sum_probs=12.7
Q ss_pred chhcccCCCCCCCCCCC
Q psy408 10 DHRVHHKYSETDADPHN 26 (132)
Q Consensus 10 ~HR~HH~~sD~~~DPhs 26 (132)
.|-..|+.|-+++-|+|
T Consensus 19 yhlnrhklshs~ekpys 35 (35)
T d2epra1 19 YHLNRHKLSHSGEKPYS 35 (35)
T ss_dssp HHHHHHGGGSCSCCCCC
T ss_pred HHHHhhhcccCCCCCCC
Confidence 36667888888888875
No 4
>d1dx5i2 g.3.11.1 (I:388-422) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.15 E-value=21 Score=17.83 Aligned_cols=8 Identities=38% Similarity=0.791 Sum_probs=6.6
Q ss_pred CCCCCCCc
Q psy408 21 DADPHNSK 28 (132)
Q Consensus 21 ~~DPhsp~ 28 (132)
++||++|.
T Consensus 11 dCdP~~p~ 18 (35)
T d1dx5i2 11 DCDPNTQA 18 (35)
T ss_dssp EECTTSTT
T ss_pred ccCCCCCC
Confidence 68999984
No 5
>d3cr5x1 a.39.1.2 (X:0-89) Calcyclin (S100) {Cow (Bos taurus), s100b [TaxId: 9913]}
Probab=9.34 E-value=24 Score=21.07 Aligned_cols=53 Identities=25% Similarity=0.464 Sum_probs=30.0
Q ss_pred cCCCCCCCCCCCCcC----Chhhhhhhhcccc-cChhHHhhccccCcccCCCCceEEEeh
Q psy408 15 HKYSETDADPHNSKR----GFFFAHVGWLMCR-KHKDVIEKGRMVDMSDVMADPLVRFHE 69 (132)
Q Consensus 15 H~~sD~~~DPhsp~r----Gf~~sH~gWl~~~-~~~~~~~~~~~~~~~Dl~~dp~~~~~~ 69 (132)
|+||++++|+++-.+ -++=+-++=++.. +.|...++ -..--|.-+|.-|-|++
T Consensus 16 hkYa~~~G~~~tLsk~Elk~Ll~~El~~~l~~~~d~~~~d~--~m~~LD~n~Dg~vdF~E 73 (90)
T d3cr5x1 16 HQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDK--VMETLDSDGDGECDFQE 73 (90)
T ss_dssp HHHHTSSSSTTSBCHHHHHHHHHHHCTTTSCCCCSHHHHHH--HHHHHCTTSSSSBCHHH
T ss_pred HHHhccCCCcCcCCHHHHHHHHHHHHHHHhcCCCCHHHHHH--HHHHhcCCCCCcCCHHH
Confidence 789999999987653 3333333333332 12222221 11234777888888887
No 6
>d1wmha_ d.15.2.2 (A:) Protein kinase C, iota type {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.24 E-value=26 Score=20.95 Aligned_cols=12 Identities=25% Similarity=0.606 Sum_probs=8.8
Q ss_pred CCCCCCCCCCCC
Q psy408 16 KYSETDADPHNS 27 (132)
Q Consensus 16 ~~sD~~~DPhsp 27 (132)
++-|.++||=+.
T Consensus 45 KWiDeEGDPCTI 56 (83)
T d1wmha_ 45 KWIDEEGDPCTV 56 (83)
T ss_dssp EEECTTSCEEEC
T ss_pred EEEcCCCCceee
Confidence 456889999665
No 7
>d1xk4c1 a.39.1.2 (C:4-86) Calcyclin (S100) {Human (Homo sapiens), s100a9 (mrp14) [TaxId: 9606]}
Probab=8.94 E-value=25 Score=20.65 Aligned_cols=53 Identities=23% Similarity=0.370 Sum_probs=30.9
Q ss_pred cCCCCCCCCCCCCcC----Chhhhhhhhccccc--ChhHHhhccccCcccCCCCceEEEeh
Q psy408 15 HKYSETDADPHNSKR----GFFFAHVGWLMCRK--HKDVIEKGRMVDMSDVMADPLVRFHE 69 (132)
Q Consensus 15 H~~sD~~~DPhsp~r----Gf~~sH~gWl~~~~--~~~~~~~~~~~~~~Dl~~dp~~~~~~ 69 (132)
|+||.+++|+++=.+ -++-.-++=.+.+. .|...++ -...-|.-+|.-+-|++
T Consensus 17 hkYa~~~G~~~tLsk~Elk~Ll~~El~~~l~~~~~d~~~vd~--~m~~LD~n~Dg~vdF~E 75 (83)
T d1xk4c1 17 HQYSVKLGHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIEH--IMEDLDTNADKQLSFEE 75 (83)
T ss_dssp HHHHTTSSSTTSBCHHHHHHHHHHHTTTTTTTGGGCHHHHHH--HHHHHCTTCSSSBCHHH
T ss_pred HHHhCcCCCcccCCHHHHHHHHHHHhHHHhcCCCCCHHHHHH--HHHHhcCCCCCcCcHHH
Confidence 889999999998753 44555555444321 2222111 11223666788888887
No 8
>d1ksoa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a3 [TaxId: 9606]}
Probab=8.42 E-value=27 Score=20.65 Aligned_cols=53 Identities=13% Similarity=0.083 Sum_probs=27.8
Q ss_pred cCCCCCCCCCCCCcC----Chhhhhhhhcccc-cChhHHhhccccCcccCCCCceEEEeh
Q psy408 15 HKYSETDADPHNSKR----GFFFAHVGWLMCR-KHKDVIEKGRMVDMSDVMADPLVRFHE 69 (132)
Q Consensus 15 H~~sD~~~DPhsp~r----Gf~~sH~gWl~~~-~~~~~~~~~~~~~~~Dl~~dp~~~~~~ 69 (132)
|+|+|+++|.++-.+ -++-+-..=.+.. ..+...+ ..+..-|.-.|..+-|++
T Consensus 16 ~kya~~dGd~~~ls~~Elk~ll~~~~~~~~~~~~~~~~~~--~~~~~lD~n~Dg~IdF~E 73 (93)
T d1ksoa_ 16 QEYAGRCGDKYKLCQAELKELLQKELATWTPTEFRECDYN--KFMSVLDTNKDCEVDFVE 73 (93)
T ss_dssp HHHHTSSSCTTCEEHHHHHHHHHHHTTTCCCCTTCHHHHH--HHHHHHHHTTTCEECHHH
T ss_pred HHHcCcCCCCCeECHHHHHHHHHHhhhcccccCCCHHHHH--HHHHHHcCCCCCCCcHHH
Confidence 788999999987542 2222222211211 1221111 112335778899998887
No 9
>d1l1da_ b.88.1.3 (A:) C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB {Neisseria gonorrhoeae [TaxId: 485]}
Probab=8.28 E-value=36 Score=22.21 Aligned_cols=9 Identities=22% Similarity=0.423 Sum_probs=6.8
Q ss_pred hhhhhhhhh
Q psy408 116 WAVNSAAHI 124 (132)
Q Consensus 116 ~~VNS~~H~ 124 (132)
+||||++=-
T Consensus 117 yCiNs~sL~ 125 (144)
T d1l1da_ 117 YCINGASLK 125 (144)
T ss_dssp EEECGGGEE
T ss_pred eccceeeEE
Confidence 699998743
No 10
>d1xm0a1 b.88.1.3 (A:1-143) Peptide methionine sulfoxide reductase MsrB {Bacillus subtilis [TaxId: 1423]}
Probab=7.84 E-value=40 Score=21.98 Aligned_cols=10 Identities=40% Similarity=0.594 Sum_probs=7.3
Q ss_pred hhhhhhhhhc
Q psy408 116 WAVNSAAHIW 125 (132)
Q Consensus 116 ~~VNS~~H~~ 125 (132)
+||||++=.|
T Consensus 114 yCINs~sL~F 123 (143)
T d1xm0a1 114 YCINSAALRF 123 (143)
T ss_dssp EECCGGGEEE
T ss_pred eeeeeeeEEE
Confidence 5899988543
Done!