RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy408
         (132 letters)



>d1lj8a3 a.100.1.9 (A:287-492) Mannitol 2-dehydrogenase
          {Pseudomonas fluorescens [TaxId: 294]}
          Length = 206

 Score = 25.0 bits (54), Expect = 3.0
 Identities = 6/37 (16%), Positives = 13/37 (35%), Gaps = 5/37 (13%)

Query: 56 MSDVMADPLVRFHEKHFFWFKLVLCFIIPTIVPYYYF 92
          + + M DPL   + + +         + P + P    
Sbjct: 32 VHETMNDPLFVAYMRAYMDLD-----VTPNLAPVPGI 63


>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma
           constant domain 2, CH2-gamma {Mouse (Mus musculus),
           gamma2 [TaxId: 10090]}
          Length = 119

 Score = 24.7 bits (53), Expect = 3.4
 Identities = 7/37 (18%), Positives = 15/37 (40%)

Query: 84  PTIVPYYYFGESLLVSVLTMNFFRYILTLNFTWAVNS 120
           P I        S +V+ + ++       +  +W VN+
Sbjct: 23  PKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNN 59


>d1qs1a2 d.166.1.1 (A:265-461) Vegetative insecticidal protein 2
           (VIP2) {Bacillus cereus [TaxId: 1396]}
          Length = 197

 Score = 23.5 bits (50), Expect = 9.1
 Identities = 8/22 (36%), Positives = 14/22 (63%)

Query: 111 TLNFTWAVNSAAHIWGNKPFDR 132
           +L+F   +N+ AH WG K ++ 
Sbjct: 1   SLDFKNDINAEAHSWGMKNYEE 22


>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1
           {Thermotoga maritima [TaxId: 2336]}
          Length = 333

 Score = 23.5 bits (50), Expect = 9.8
 Identities = 6/54 (11%), Positives = 15/54 (27%), Gaps = 4/54 (7%)

Query: 6   NWVRDH----RVHHKYSETDADPHNSKRGFFFAHVGWLMCRKHKDVIEKGRMVD 55
            +V       R+ H  +       N +  +        + R     ++K +   
Sbjct: 211 QYVNKTESAVRITHLPTGIVVSCQNERSQYQNKQTALRILRARLYQLQKEQKER 264


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.142    0.493 

Gapped
Lambda     K      H
   0.267   0.0605    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 549,494
Number of extensions: 23812
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 12
Length of query: 132
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 56
Effective length of database: 1,364,116
Effective search space: 76390496
Effective search space used: 76390496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 48 (22.5 bits)