BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4080
(403 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O02008|TRA2_DROVI Transformer-2 sex-determining protein OS=Drosophila virilis GN=tra2
PE=3 SV=1
Length = 272
Score = 167 bits (424), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 69/108 (63%), Positives = 92/108 (85%)
Query: 167 EEFADGRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFV 226
+ R++PQ SRC+GVFGL+ TT+Q++ +F+K+GP+ER+++VIDA T RSRGFCF+
Sbjct: 92 QRMRQARDHPQASRCIGVFGLNTNTTQQKVRELFNKFGPIERIQMVIDAHTHRSRGFCFI 151
Query: 227 YFESRDDAAAAKDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPT 274
YFE+ DA AKDACTGME+DGR+IRVD+S+TQRAHTPTPG+YMGRP+
Sbjct: 152 YFENLGDARVAKDACTGMEVDGRRIRVDYSITQRAHTPTPGVYMGRPS 199
>sp|P19018|TRA2_DROME Transformer-2 sex-determining protein OS=Drosophila melanogaster
GN=tra2 PE=1 SV=1
Length = 264
Score = 162 bits (411), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 67/106 (63%), Positives = 90/106 (84%)
Query: 167 EEFADGRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFV 226
E RE+PQ SRC+GVFGL+ T++ ++ +F+KYGP+ER+++VIDA+T RSRGFCF+
Sbjct: 84 ERMHKSREHPQASRCIGVFGLNTNTSQHKVRELFNKYGPIERIQMVIDAQTQRSRGFCFI 143
Query: 227 YFESRDDAAAAKDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGR 272
YFE DA AAKD+C+G+E+DGR+IRVDFS+TQRAHTPTPG+Y+GR
Sbjct: 144 YFEKLSDARAAKDSCSGIEVDGRRIRVDFSITQRAHTPTPGVYLGR 189
>sp|P62997|TRA2B_RAT Transformer-2 protein homolog beta OS=Rattus norvegicus GN=Tra2b
PE=1 SV=1
Length = 288
Score = 154 bits (389), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 68/104 (65%), Positives = 83/104 (79%)
Query: 172 GRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESR 231
R NP P+ CLGVFGLS+YTTE+ + +FSKYGP+ V +V D ++ RSRGF FVYFE+
Sbjct: 110 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENV 169
Query: 232 DDAAAAKDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTY 275
DDA AK+ GME+DGR+IRVDFS+T+R HTPTPGIYMGRPTY
Sbjct: 170 DDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTY 213
>sp|P62996|TRA2B_MOUSE Transformer-2 protein homolog beta OS=Mus musculus GN=Tra2b PE=1
SV=1
Length = 288
Score = 154 bits (389), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 68/104 (65%), Positives = 83/104 (79%)
Query: 172 GRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESR 231
R NP P+ CLGVFGLS+YTTE+ + +FSKYGP+ V +V D ++ RSRGF FVYFE+
Sbjct: 110 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENV 169
Query: 232 DDAAAAKDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTY 275
DDA AK+ GME+DGR+IRVDFS+T+R HTPTPGIYMGRPTY
Sbjct: 170 DDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTY 213
>sp|P62995|TRA2B_HUMAN Transformer-2 protein homolog beta OS=Homo sapiens GN=TRA2B PE=1
SV=1
Length = 288
Score = 154 bits (389), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 68/104 (65%), Positives = 83/104 (79%)
Query: 172 GRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESR 231
R NP P+ CLGVFGLS+YTTE+ + +FSKYGP+ V +V D ++ RSRGF FVYFE+
Sbjct: 110 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENV 169
Query: 232 DDAAAAKDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTY 275
DDA AK+ GME+DGR+IRVDFS+T+R HTPTPGIYMGRPTY
Sbjct: 170 DDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTY 213
>sp|Q3ZBT6|TRA2B_BOVIN Transformer-2 protein homolog beta OS=Bos taurus GN=TRA2B PE=2 SV=1
Length = 288
Score = 154 bits (389), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 68/104 (65%), Positives = 83/104 (79%)
Query: 172 GRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESR 231
R NP P+ CLGVFGLS+YTTE+ + +FSKYGP+ V +V D ++ RSRGF FVYFE+
Sbjct: 110 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENV 169
Query: 232 DDAAAAKDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTY 275
DDA AK+ GME+DGR+IRVDFS+T+R HTPTPGIYMGRPTY
Sbjct: 170 DDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTY 213
>sp|Q6PFR5|TRA2A_MOUSE Transformer-2 protein homolog alpha OS=Mus musculus GN=Tra2a PE=1
SV=1
Length = 281
Score = 152 bits (385), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 67/103 (65%), Positives = 83/103 (80%)
Query: 173 RENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRD 232
R NP P+ CLGVFGLS+YTTE+ + +FS+YGP+ V VV D +TGRSRGF FVYFE D
Sbjct: 110 RANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERID 169
Query: 233 DAAAAKDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTY 275
D+ A + GME+DGR+IRVD+S+T+RAHTPTPGIYMGRPT+
Sbjct: 170 DSKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTH 212
>sp|Q13595|TRA2A_HUMAN Transformer-2 protein homolog alpha OS=Homo sapiens GN=TRA2A PE=1
SV=1
Length = 282
Score = 152 bits (385), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 67/103 (65%), Positives = 83/103 (80%)
Query: 173 RENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRD 232
R NP P+ CLGVFGLS+YTTE+ + +FS+YGP+ V VV D +TGRSRGF FVYFE D
Sbjct: 112 RANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERID 171
Query: 233 DAAAAKDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTY 275
D+ A + GME+DGR+IRVD+S+T+RAHTPTPGIYMGRPT+
Sbjct: 172 DSKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTH 214
>sp|Q54Y98|TRA2_DICDI Transformer-2 protein homolog OS=Dictyostelium discoideum GN=tra2
PE=3 SV=1
Length = 326
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 70/99 (70%)
Query: 178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAA 237
PS LGVFGL+ T E+ + FS++G ++ V++++D KTGRS+ F FVYFE+++DA A
Sbjct: 111 PSNVLGVFGLAPQTEERDLKDEFSRFGKIDHVDLIMDRKTGRSKCFGFVYFENKEDAVRA 170
Query: 238 KDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTYE 276
K+ C +++ G+ IR DFS T++ H PTPG Y G P Y+
Sbjct: 171 KEECQDLQLHGKSIRTDFSATKKPHEPTPGKYFGNPRYD 209
>sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2
SV=1
Length = 172
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/73 (56%), Positives = 47/73 (64%)
Query: 182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
L V GLS T EQ + +FSKYG + V VV D +T RSRGF FV FE+ DDA A A
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 242 TGMEIDGRQIRVD 254
G +DGRQIRVD
Sbjct: 68 NGKSVDGRQIRVD 80
>sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1
SV=1
Length = 172
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/73 (56%), Positives = 47/73 (64%)
Query: 182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
L V GLS T EQ + +FSKYG + V VV D +T RSRGF FV FE+ DDA A A
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 242 TGMEIDGRQIRVD 254
G +DGRQIRVD
Sbjct: 68 NGKSVDGRQIRVD 80
>sp|P60825|CIRBP_RAT Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp
PE=2 SV=1
Length = 172
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/73 (56%), Positives = 47/73 (64%)
Query: 182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
L V GLS T EQ + +FSKYG + V VV D +T RSRGF FV FE+ DDA A A
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 242 TGMEIDGRQIRVD 254
G +DGRQIRVD
Sbjct: 68 NGKSVDGRQIRVD 80
>sp|P60824|CIRBP_MOUSE Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1
SV=1
Length = 172
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/73 (56%), Positives = 47/73 (64%)
Query: 182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
L V GLS T EQ + +FSKYG + V VV D +T RSRGF FV FE+ DDA A A
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 242 TGMEIDGRQIRVD 254
G +DGRQIRVD
Sbjct: 68 NGKSVDGRQIRVD 80
>sp|P60826|CIRBP_CRIGR Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP
PE=2 SV=1
Length = 172
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/73 (56%), Positives = 47/73 (64%)
Query: 182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
L V GLS T EQ + +FSKYG + V VV D +T RSRGF FV FE+ DDA A A
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 242 TGMEIDGRQIRVD 254
G +DGRQIRVD
Sbjct: 68 NGKSVDGRQIRVD 80
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
PE=2 SV=1
Length = 166
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 48/73 (65%)
Query: 182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
L V GL+ TTE+ + +FSKYG V V VV D ++ RSRGF FV FE+ +DA A A
Sbjct: 8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAM 67
Query: 242 TGMEIDGRQIRVD 254
G +DGRQIRVD
Sbjct: 68 NGKSVDGRQIRVD 80
>sp|Q9DED4|CIRBB_XENLA Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b
PE=1 SV=1
Length = 166
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 47/73 (64%)
Query: 182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
L + GL+ T E+ + +FSKYG + V VV D +T RSRGF FV FE+ DDA A A
Sbjct: 7 LFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAM 66
Query: 242 TGMEIDGRQIRVD 254
G +DGRQIRVD
Sbjct: 67 NGKAVDGRQIRVD 79
>sp|Q9PTX2|CIRBP_LITCT Cold-inducible RNA-binding protein OS=Lithobates catesbeiana
GN=cirbp PE=2 SV=1
Length = 164
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 47/73 (64%)
Query: 182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
L V GLS T EQ + +FSKYG ++ V VV D +T RSRGF FV FE+ +DA A
Sbjct: 8 LFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGM 67
Query: 242 TGMEIDGRQIRVD 254
G +DGRQIRVD
Sbjct: 68 NGKTVDGRQIRVD 80
>sp|Q8WUA2|PPIL4_HUMAN Peptidyl-prolyl cis-trans isomerase-like 4 OS=Homo sapiens GN=PPIL4
PE=1 SV=1
Length = 492
Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 69/145 (47%), Gaps = 11/145 (7%)
Query: 119 SRSPG-YRKRSSSYRSGGGSRGDSYGGRGKIIIAVVTEVEEEAEATA------MVEEFAD 171
RSP R++ S R G D + GR V E++ E EA MV + D
Sbjct: 176 DRSPEPTREQLDSGRIGADEEIDDFKGRSA---EEVEEIKAEKEAKTQAILLEMVGDLPD 232
Query: 172 GRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESR 231
P P L V L+ TT++ + IFS++GP+ EV+ D KTG S + F+ FE
Sbjct: 233 ADIKP-PENVLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKE 291
Query: 232 DDAAAAKDACTGMEIDGRQIRVDFS 256
+D A + ID R+I VDFS
Sbjct: 292 EDCEKAFFKMDNVLIDDRRIHVDFS 316
>sp|O93235|CIRBA_XENLA Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-a
PE=1 SV=2
Length = 166
Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 45/73 (61%)
Query: 182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
L + GL+ T E + F+KYG + V VV D +T RSRGF FV FE+ DDA A A
Sbjct: 7 LFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAM 66
Query: 242 TGMEIDGRQIRVD 254
G +DGRQIRVD
Sbjct: 67 NGKSVDGRQIRVD 79
>sp|Q9CXG3|PPIL4_MOUSE Peptidyl-prolyl cis-trans isomerase-like 4 OS=Mus musculus GN=Ppil4
PE=2 SV=2
Length = 492
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 69/146 (47%), Gaps = 11/146 (7%)
Query: 117 SRSRSPGYRKRSSSYRSGGGSRGDSYGGRGKIIIAVVTEVEEEAEATA------MVEEFA 170
RS P +++ S R G D + GR V E++ E EA MV +
Sbjct: 176 DRSPEPT-KEQLDSGRIGADEEIDDFKGRSA---EEVEEIKAEKEAKTQAILLEMVGDLP 231
Query: 171 DGRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFES 230
D P P L V L+ TT++ + IFS++GP+ EV+ D KTG S + F+ FE
Sbjct: 232 DADIKP-PENVLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEK 290
Query: 231 RDDAAAAKDACTGMEIDGRQIRVDFS 256
+D A + ID R+I VDFS
Sbjct: 291 EEDCEKAFFKMDNVLIDDRRIHVDFS 316
>sp|Q10422|YDC1_SCHPO Uncharacterized RNA-binding protein C25G10.01
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC25G10.01 PE=1 SV=1
Length = 297
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 6/121 (4%)
Query: 155 EVEEEAEATAMVEEFADGRENPQPSRCLG----VFGLSIYTTEQQINHIFSKYGPVERVE 210
EV+ E+TA+ ++ + + P+ S LG V G++ E ++ IFSK+G V V
Sbjct: 74 EVDPNNESTALDKK--EPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVR 131
Query: 211 VVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYM 270
++ + T SRGF F+ F + ++A +A D E GR + V + R H+PTPG YM
Sbjct: 132 IMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKAKRSRPHSPTPGKYM 191
Query: 271 G 271
G
Sbjct: 192 G 192
>sp|P98179|RBM3_HUMAN Putative RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1
Length = 157
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 45/73 (61%)
Query: 182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
L V GL+ T EQ + FS +GP+ V VV D +T RSRGF F+ F + + A+ A A
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67
Query: 242 TGMEIDGRQIRVD 254
G +DGRQIRVD
Sbjct: 68 NGESLDGRQIRVD 80
>sp|O89086|RBM3_MOUSE Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1
Length = 153
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 45/73 (61%)
Query: 182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
L V GL+ T EQ + FS +GP+ V VV D +T RSRGF F+ F + + A+ A A
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67
Query: 242 TGMEIDGRQIRVD 254
G +DGRQIRVD
Sbjct: 68 NGESLDGRQIRVD 80
>sp|P08199|NUCL_MESAU Nucleolin OS=Mesocricetus auratus GN=NCL PE=1 SV=2
Length = 714
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAA 236
QPS+ L V GLS TTE+ + F G V R +V D +TG S+GF FV F S +DA A
Sbjct: 569 QPSKTLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKA 625
Query: 237 AKDACTGMEIDGRQIRVDFS 256
AK+A EIDG ++ +D++
Sbjct: 626 AKEAMEDGEIDGNKVTLDWA 645
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 179 SRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAK 238
S+ L + LS TE+ + +F K ++ V + G+S+G+ F+ F S +DA A
Sbjct: 485 SKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQQGKSKGYAFIEFASFEDAKEAL 540
Query: 239 DACTGMEIDGRQIRVDF 255
++C MEI+GR IR++
Sbjct: 541 NSCNKMEIEGRTIRLEL 557
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 179 SRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAK 238
+R L LS TE ++ +F + +E+ + ++ G+S+G ++ F+S DA
Sbjct: 393 ARTLLAKNLSFNITEDELKEVFE-----DALEIRLVSQDGKSKGIAYIEFKSEADAEKNL 447
Query: 239 DACTGMEIDGRQIRVDFS 256
+ G EIDGR + + ++
Sbjct: 448 EEKQGAEIDGRSVSLYYT 465
Score = 35.4 bits (80), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 212 VIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254
V+D +TG +R F +V FES +D A + TG+++ G +I+++
Sbjct: 339 VVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 380
>sp|P09405|NUCL_MOUSE Nucleolin OS=Mus musculus GN=Ncl PE=1 SV=2
Length = 707
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAA 236
QPS+ L V GLS TTE+ + F G V R +V D +TG S+GF FV F S +DA A
Sbjct: 566 QPSKTLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKA 622
Query: 237 AKDACTGMEIDGRQIRVDFS 256
AK+A EIDG ++ +D++
Sbjct: 623 AKEAMEDGEIDGNKVTLDWA 642
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 179 SRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAK 238
S+ L + LS T++ + +F K ++ V G+ +G+ F+ F S +DA A
Sbjct: 486 SKTLVLSNLSYSATKETLEEVFEKATFIK----VPQNPHGKPKGYAFIEFASFEDAKEAL 541
Query: 239 DACTGMEIDGRQIRVDFSVTQRAHTPTPGIYM 270
++C MEI+GR IR++ + P+ +++
Sbjct: 542 NSCNKMEIEGRTIRLELQGSNSRSQPSKTLFV 573
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 179 SRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAK 238
+R L LS TE ++ +F + +E+ + ++ G+S+G ++ F+S DA
Sbjct: 394 ARTLLAKNLSFNITEDELKEVFE-----DAMEIRLVSQDGKSKGIAYIEFKSEADAEKNL 448
Query: 239 DACTGMEIDGRQIRVDFS 256
+ G EIDGR + + ++
Sbjct: 449 EEKQGAEIDGRSVSLYYT 466
Score = 35.4 bits (80), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 211 VVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254
V+D +TG +R F +V FES +D A + TG+++ G +I+++
Sbjct: 339 AVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 381
>sp|P13383|NUCL_RAT Nucleolin OS=Rattus norvegicus GN=Ncl PE=1 SV=3
Length = 713
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAA 236
QPS+ L V GLS TTE+ + F G V R +V D +TG S+GF FV F S +DA A
Sbjct: 572 QPSKTLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKA 628
Query: 237 AKDACTGMEIDGRQIRVDFS 256
AK+A EIDG ++ +D++
Sbjct: 629 AKEAMEDGEIDGNKVTLDWA 648
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 179 SRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAK 238
S+ L + LS TE+ + +F K ++ V G+S+G+ F+ F S +DA A
Sbjct: 488 SKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNPHGKSKGYAFIEFASFEDAKEAL 543
Query: 239 DACTGMEIDGRQIRVDF 255
++C MEI+GR IR++
Sbjct: 544 NSCNKMEIEGRTIRLEL 560
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 179 SRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAK 238
+R L LS TE ++ +F + VE+ + ++ GRS+G ++ F+S DA
Sbjct: 396 ARTLLAKNLSFNITEDELKEVFE-----DAVEIRLVSQDGRSKGIAYIEFKSEADAEKNL 450
Query: 239 DACTGMEIDGRQIRVDFS 256
+ G EIDGR + + ++
Sbjct: 451 EEKQGAEIDGRSVSLYYT 468
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 213 IDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254
+D +TG +R F +V FES +D A + TG+++ G +I+++
Sbjct: 343 VDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 383
>sp|Q5RF26|NUCL_PONAB Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3
Length = 712
Score = 65.5 bits (158), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAA 236
QPS+ L V GLS TTE+ + F G V R +V D +TG S+GF FV F S +DA A
Sbjct: 571 QPSKTLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKA 627
Query: 237 AKDACTGMEIDGRQIRVDFS 256
AK+A EIDG ++ +D++
Sbjct: 628 AKEAMEDGEIDGNKVTLDWA 647
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 179 SRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAK 238
S+ L + LS TE+ + +F K ++ V + G+S+G+ F+ F S +DA A
Sbjct: 487 SKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAKEAL 542
Query: 239 DACTGMEIDGRQIRVDF 255
++C EI+GR IR++
Sbjct: 543 NSCNKREIEGRAIRLEL 559
Score = 40.0 bits (92), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 179 SRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAK 238
+R L L T+ ++ +F + E+ + +K G+S+G ++ F++ DA
Sbjct: 394 ARTLLAKNLPYKVTQDELKEVFE-----DAAEIRLVSKDGKSKGIAYIEFKTEADAEKTF 448
Query: 239 DACTGMEIDGRQIRVDFS 256
+ G EIDGR I + ++
Sbjct: 449 EEKQGTEIDGRSISLYYT 466
Score = 33.1 bits (74), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 211 VVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254
V+D + G +R F +V FES +D A + TG+++ G +I+++
Sbjct: 339 AVVDVRIGMTRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 381
>sp|P19338|NUCL_HUMAN Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3
Length = 710
Score = 65.5 bits (158), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAA 236
QPS+ L V GLS TTE+ + F G V R +V D +TG S+GF FV F S +DA A
Sbjct: 569 QPSKTLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKA 625
Query: 237 AKDACTGMEIDGRQIRVDFS 256
AK+A EIDG ++ +D++
Sbjct: 626 AKEAMEDGEIDGNKVTLDWA 645
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 179 SRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAK 238
S+ L + LS TE+ + +F K ++ V + G+S+G+ F+ F S +DA A
Sbjct: 485 SKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAKEAL 540
Query: 239 DACTGMEIDGRQIRVDF 255
++C EI+GR IR++
Sbjct: 541 NSCNKREIEGRAIRLEL 557
Score = 40.0 bits (92), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 179 SRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAK 238
+R L L T+ ++ +F + E+ + +K G+S+G ++ F++ DA
Sbjct: 392 ARTLLAKNLPYKVTQDELKEVFE-----DAAEIRLVSKDGKSKGIAYIEFKTEADAEKTF 446
Query: 239 DACTGMEIDGRQIRVDFS 256
+ G EIDGR I + ++
Sbjct: 447 EEKQGTEIDGRSISLYYT 464
Score = 33.1 bits (74), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 211 VVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254
V+D + G +R F +V FES +D A + TG+++ G +I+++
Sbjct: 337 AVVDVRIGMTRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 379
>sp|Q4R4J7|NUCL_MACFA Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3
Length = 711
Score = 65.5 bits (158), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAA 236
QPS+ L V GLS TTE+ + F G V R +V D +TG S+GF FV F S +DA A
Sbjct: 570 QPSKTLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKA 626
Query: 237 AKDACTGMEIDGRQIRVDFS 256
AK+A EIDG ++ +D++
Sbjct: 627 AKEAMEDGEIDGNKVTLDWA 646
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 179 SRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAK 238
S+ L + LS TE+ + +F K ++ V + G+S+G+ F+ F S +DA A
Sbjct: 486 SKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAKEAL 541
Query: 239 DACTGMEIDGRQIRVDF 255
++C EI+GR IR++
Sbjct: 542 NSCNKREIEGRAIRLEL 558
Score = 40.0 bits (92), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 179 SRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAK 238
+R L L T+ ++ +F + E+ + +K G+S+G ++ F++ DA
Sbjct: 393 ARTLLAKNLPYKVTQDELKEVFE-----DAAEIRLVSKDGKSKGIAYIEFKTEADAEKTF 447
Query: 239 DACTGMEIDGRQIRVDFS 256
+ G EIDGR I + ++
Sbjct: 448 EEKQGTEIDGRSISLYYT 465
Score = 33.1 bits (74), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 211 VVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254
V+D + G +R F +V FES +D A + TG+++ G +I+++
Sbjct: 338 AVVDVRIGMTRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 380
>sp|Q925G0|RBM3_RAT Putative RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1
SV=2
Length = 155
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 44/73 (60%)
Query: 182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
L V GL+ T EQ + FS +GP+ V VV D +T RSRGF F+ F + + A+ A
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAM 67
Query: 242 TGMEIDGRQIRVD 254
G +DGRQIRVD
Sbjct: 68 NGESLDGRQIRVD 80
>sp|O13829|RU17_SCHPO U1 small nuclear ribonucleoprotein 70 kDa homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=usp101 PE=1 SV=1
Length = 261
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 45/77 (58%)
Query: 178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAA 237
P + + + LS T E I F++YGP+ER+ VV + TG+S G+ FV FE D A
Sbjct: 98 PYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVA 157
Query: 238 KDACTGMEIDGRQIRVD 254
A G+ ++GR+I VD
Sbjct: 158 YKASAGLMLNGRRIVVD 174
>sp|Q9LIS2|RBG4_ARATH Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis
thaliana GN=RBG4 PE=2 SV=1
Length = 136
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
L V GLS T + + F+ +G V V+ D +TGRSRGF FV F D A A
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 242 TGMEIDGRQIRVDFSVTQRAHTP 264
G E++GRQIRV+ + T+R+ P
Sbjct: 97 DGKELNGRQIRVNLA-TERSSAP 118
>sp|B0BN49|RBMX2_RAT RNA-binding motif protein, X-linked 2 OS=Rattus norvegicus GN=Rbmx2
PE=2 SV=1
Length = 328
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 44/76 (57%)
Query: 186 GLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGME 245
GL TE I +FS+YG + + +V D KTG+S+GFCF+ +E + A D G++
Sbjct: 42 GLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIK 101
Query: 246 IDGRQIRVDFSVTQRA 261
I GR IRVD RA
Sbjct: 102 IKGRTIRVDHVANYRA 117
>sp|Q8R0F5|RBMX2_MOUSE RNA-binding motif protein, X-linked 2 OS=Mus musculus GN=Rbmx2 PE=1
SV=1
Length = 326
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 45/78 (57%)
Query: 184 VFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTG 243
V GL TE I +FS+YG + + +V D KTG+S+GFCF+ +E + A D G
Sbjct: 40 VGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNG 99
Query: 244 MEIDGRQIRVDFSVTQRA 261
++I GR IRVD RA
Sbjct: 100 IKIKGRTIRVDHVSNYRA 117
>sp|Q9Y388|RBMX2_HUMAN RNA-binding motif protein, X-linked 2 OS=Homo sapiens GN=RBMX2 PE=1
SV=2
Length = 322
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 44/76 (57%)
Query: 186 GLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGME 245
GL TE I +FS+YG + + +V D KTG+S+GFCF+ +E + A D G++
Sbjct: 42 GLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIK 101
Query: 246 IDGRQIRVDFSVTQRA 261
I GR IRVD RA
Sbjct: 102 IKGRTIRVDHVSNYRA 117
>sp|Q177H0|NCBP2_AEDAE Nuclear cap-binding protein subunit 2 OS=Aedes aegypti GN=Cbp20
PE=3 SV=1
Length = 159
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
L + LS YTTE+QI+ +FS+ G + R+ + +D GFCFV + +RDDA +A
Sbjct: 36 LYIGNLSFYTTEEQIHELFSRCGDIRRIVMGLDKFKKTPCGFCFVEYYARDDAESAMRYI 95
Query: 242 TGMEIDGRQIRVDFS 256
G +D R +RVD+
Sbjct: 96 NGTRLDDRIVRVDWD 110
>sp|Q9XFD1|NCBP2_ARATH Nuclear cap-binding protein subunit 2 OS=Arabidopsis thaliana
GN=CBP20 PE=1 SV=1
Length = 257
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 167 EEFADGRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFV 226
EEF E + S + + +S YTTE+Q+ +FS+ G ++++ + +D T GFCFV
Sbjct: 24 EEFD---EALRASTTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFV 80
Query: 227 YFESRDDAAAAKDACTGMEIDGRQIRVDFS 256
F SR+D A +G +D R IRVDF
Sbjct: 81 LFYSREDTEDAVKYISGTILDDRPIRVDFD 110
>sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 291
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 166 VEEFADGRENPQPSRCLGVF--GLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGF 223
+E+ + E P+ S L +F L + +F + G VE VEV+ D TGRSRGF
Sbjct: 71 LEDDVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGF 130
Query: 224 CFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254
FV ++++ AA+ G EIDGR IRV+
Sbjct: 131 GFVTMSTKEEVEAAEQQFNGYEIDGRAIRVN 161
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%)
Query: 187 LSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEI 246
LS + + +FS+ G V +VV D +GRSRGF FV + S + A D+ G+++
Sbjct: 214 LSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDL 273
Query: 247 DGRQIRV 253
DGR IRV
Sbjct: 274 DGRSIRV 280
>sp|P0C8Z4|RMXL3_PANTR RNA-binding motif protein, X-linked-like-3 OS=Pan troglodytes
GN=RBMXL3 PE=4 SV=1
Length = 992
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Query: 182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
L V GL++ T E+ + F KYG + +V ++ D KT +SRGF FV FES DA AA
Sbjct: 10 LFVGGLNLKTDEKALKAEFGKYGHIIKVFLIKDRKTNKSRGFAFVTFESPADAKAAARDM 69
Query: 242 TGMEIDGRQIRVDFSV-----TQRAHTPTPG 267
G +DG+ I V ++ + R PTPG
Sbjct: 70 NGKYLDGKAIMVAQTIKPAFESSRWVPPTPG 100
>sp|Q9SIX3|RBG1_ARATH Probable glycine-rich RNA-binding protein 1 OS=Arabidopsis thaliana
GN=RBG1 PE=2 SV=2
Length = 149
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 180 RCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKD 239
RC V GL+ T EQ I F+++G V +++ID +TGRS+GF FV F+ D A D
Sbjct: 9 RCF-VGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAID 67
Query: 240 ACTGMEIDGRQI 251
G E+DGR I
Sbjct: 68 RMNGQELDGRNI 79
>sp|Q6IRQ4|RBMX_XENLA RNA-binding motif protein, X chromosome OS=Xenopus laevis GN=rbmx
PE=2 SV=1
Length = 370
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Query: 182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
L + GL+ T E+ + +F KYG V V ++ D +T +SRGF FV FES DA A
Sbjct: 10 LFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAAREL 69
Query: 242 TGMEIDGRQIRVD------FSVTQRAHTPT 265
G +DG+ I+V+ FS R PT
Sbjct: 70 NGKALDGKPIKVEQATKPSFSTPSRRGPPT 99
>sp|Q9C909|RBG5_ARATH Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis
thaliana GN=RBG5 PE=2 SV=1
Length = 289
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 177 QPSRCLG-----VFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESR 231
Q RC+ V G+S T E + FSKYG V ++++D +TGRSRGF FV F S
Sbjct: 26 QSIRCMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTST 85
Query: 232 DDAAAAKDACTGMEIDGRQIRVDFSV 257
++A+ A G ++ GR+IRV+++
Sbjct: 86 EEASNAM-QLDGQDLHGRRIRVNYAT 110
>sp|Q42404|RU17_ARATH U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana
GN=RNU1 PE=1 SV=1
Length = 427
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 156 VEEEAEATAMVEEFADGRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDA 215
VE+ AE + D P + L V L+ ++E +I F YGP++RV +V D
Sbjct: 114 VEKAAEDLKKYDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQ 173
Query: 216 KTGRSRGFCFV-YFESRDDAAAAKDACTGMEIDGRQIRVD 254
T + +G+ F+ Y +RD AA K A G +IDGR++ VD
Sbjct: 174 LTNKPKGYAFIEYMHTRDMKAAYKQA-DGQKIDGRRVLVD 212
>sp|Q43472|GRP_HORVU Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare
GN=blt801 PE=1 SV=1
Length = 161
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 180 RCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKD 239
RC V GL T +Q + + FSKYG V +++ D +TGRSRGF FV F S + A +
Sbjct: 7 RCF-VGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIE 65
Query: 240 ACTGMEIDGRQIRVDFSVTQRAH 262
A G ++DGR I V+ + ++R+
Sbjct: 66 AMNGQDLDGRNITVNEAQSRRSD 88
>sp|Q8N7X1|RMXL3_HUMAN RNA-binding motif protein, X-linked-like-3 OS=Homo sapiens
GN=RBMXL3 PE=2 SV=2
Length = 1067
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Query: 182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
L + GL++ T E+ + F KYG + +V ++ D KT +SRGF FV FES DA AA
Sbjct: 10 LFIGGLNLKTDEKALKAEFGKYGHIIKVFLMKDRKTNKSRGFAFVTFESPADAKAAARDM 69
Query: 242 TGMEIDGRQIRVDFSV-----TQRAHTPTPG 267
G +DG+ I V ++ + R PTPG
Sbjct: 70 NGKYLDGKAIMVAQTIKPAFKSSRWVPPTPG 100
>sp|Q7QCB6|NCBP2_ANOGA Nuclear cap-binding protein subunit 2 OS=Anopheles gambiae GN=Cbp20
PE=3 SV=3
Length = 163
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 45/78 (57%)
Query: 179 SRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAK 238
S L V LS YTTE+QI+ +FS+ G V R+ + +D GFCFV + SR DA +A
Sbjct: 37 SSTLYVGNLSFYTTEEQIHELFSRCGDVRRIIMGLDKFKKTPCGFCFVEYYSRLDAESAM 96
Query: 239 DACTGMEIDGRQIRVDFS 256
G +D R +RVD+
Sbjct: 97 RYINGTRLDDRIVRVDWD 114
>sp|Q60990|RBY1B_MOUSE RNA-binding motif protein, Y chromosome, family 1 member B OS=Mus
musculus GN=Rbmy1b PE=2 SV=3
Length = 380
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDD 233
E QP + + GL+I T ++ + IF ++GPV RV ++ D +T +SRGF F+ F D
Sbjct: 3 ETDQPGKIF-IGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRPAD 61
Query: 234 AAAAKDACTGMEIDGRQIRV 253
A A G+ +DG++I+V
Sbjct: 62 AKNAVKEMNGVILDGKRIKV 81
>sp|C1BY64|NCBP2_ESOLU Nuclear cap-binding protein subunit 2 OS=Esox lucius GN=ncbp2 PE=2
SV=1
Length = 155
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 45/80 (56%)
Query: 177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAA 236
+ S L V LS YTTE+Q+ +FSK G V+R+ + +D + GFCFV + +R DA
Sbjct: 36 KQSNTLYVGNLSFYTTEEQVYELFSKSGDVKRIIIGLDKVKKTACGFCFVEYYTRADAEN 95
Query: 237 AKDACTGMEIDGRQIRVDFS 256
A G +D R IR D+
Sbjct: 96 AMRFVNGTRLDDRIIRTDWD 115
>sp|Q84L14|NCBP2_ORYSJ Nuclear cap-binding protein subunit 2 OS=Oryza sativa subsp.
japonica GN=CBP20 PE=2 SV=1
Length = 243
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 46/80 (57%)
Query: 177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAA 236
Q S + V +S YTTE+Q +FS+ G + ++ + +D + GFCF+ + SR+DA
Sbjct: 31 QASVTVYVGNMSFYTTEEQAYELFSRAGEIRKIIMGLDKNSKTPCGFCFILYYSREDAED 90
Query: 237 AKDACTGMEIDGRQIRVDFS 256
A +G +D R IRVDF
Sbjct: 91 AVKYISGTMLDDRPIRVDFD 110
>sp|O35698|RBY1A_MOUSE RNA-binding motif protein, Y chromosome, family 1 member A1 OS=Mus
musculus GN=Rbmy1a1 PE=1 SV=2
Length = 380
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDD 233
E QP + + GL+I T ++ + IF ++GPV RV ++ D +T +SRGF F+ F D
Sbjct: 3 ETNQPGKIF-IGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLAD 61
Query: 234 AAAAKDACTGMEIDGRQIRV 253
A A G+ +DG++I+V
Sbjct: 62 AKNAVKEMNGVILDGKRIKV 81
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 160,255,674
Number of Sequences: 539616
Number of extensions: 7132195
Number of successful extensions: 25927
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 560
Number of HSP's that attempted gapping in prelim test: 20654
Number of HSP's gapped (non-prelim): 4452
length of query: 403
length of database: 191,569,459
effective HSP length: 120
effective length of query: 283
effective length of database: 126,815,539
effective search space: 35888797537
effective search space used: 35888797537
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)