Query psy4080
Match_columns 403
No_of_seqs 457 out of 3120
Neff 8.2
Searched_HMMs 46136
Date Sat Aug 17 00:49:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4080.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4080hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01622 SF-CC1 splicing fact 100.0 7.4E-29 1.6E-33 253.1 21.6 152 176-334 86-237 (457)
2 TIGR01622 SF-CC1 splicing fact 99.9 2.7E-25 5.9E-30 226.8 25.5 116 142-257 130-264 (457)
3 TIGR01659 sex-lethal sex-letha 99.9 1.8E-25 4E-30 217.9 18.2 142 175-334 103-244 (346)
4 TIGR01642 U2AF_lg U2 snRNP aux 99.9 6.9E-24 1.5E-28 219.3 27.8 157 178-334 294-473 (509)
5 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.5E-23 3.1E-28 216.9 24.8 150 175-334 171-346 (509)
6 TIGR01645 half-pint poly-U bin 99.9 2.4E-23 5.3E-28 213.5 18.8 152 176-334 104-255 (612)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 4.5E-23 9.8E-28 203.4 16.7 140 178-335 2-141 (352)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 4.6E-22 1E-26 196.2 17.8 190 142-334 44-320 (352)
9 KOG0147|consensus 99.9 2.2E-22 4.8E-27 197.3 7.2 153 177-334 177-329 (549)
10 TIGR01628 PABP-1234 polyadenyl 99.9 4.4E-21 9.5E-26 200.7 16.2 137 181-334 2-138 (562)
11 KOG0145|consensus 99.9 1.5E-21 3.3E-26 174.8 10.1 144 177-338 39-182 (360)
12 KOG0144|consensus 99.9 2.4E-21 5.2E-26 184.6 10.4 140 177-334 32-174 (510)
13 KOG0148|consensus 99.8 1.2E-20 2.5E-25 170.2 12.2 147 179-334 62-209 (321)
14 KOG0145|consensus 99.8 1.1E-20 2.4E-25 169.4 10.9 190 142-334 82-329 (360)
15 TIGR01628 PABP-1234 polyadenyl 99.8 4.4E-20 9.6E-25 193.2 15.9 188 142-334 128-335 (562)
16 TIGR01648 hnRNP-R-Q heterogene 99.8 5.9E-20 1.3E-24 188.3 14.5 136 176-334 55-191 (578)
17 KOG0117|consensus 99.8 1.5E-19 3.2E-24 173.2 15.2 137 174-334 78-217 (506)
18 KOG0127|consensus 99.8 1.4E-19 3.1E-24 176.8 15.1 192 141-336 45-345 (678)
19 KOG0131|consensus 99.8 6E-20 1.3E-24 156.9 9.5 141 177-334 7-148 (203)
20 KOG0124|consensus 99.8 1.8E-20 3.8E-25 175.0 6.5 150 178-334 112-261 (544)
21 KOG0117|consensus 99.8 4.8E-19 1E-23 169.7 14.8 173 140-333 122-301 (506)
22 PLN03134 glycine-rich RNA-bind 99.8 2.4E-18 5.2E-23 147.7 12.7 85 177-261 32-116 (144)
23 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.8 7.8E-18 1.7E-22 172.7 17.6 151 176-334 272-445 (481)
24 TIGR01648 hnRNP-R-Q heterogene 99.8 5.7E-18 1.2E-22 173.8 15.2 175 141-334 97-278 (578)
25 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.8 8.5E-18 1.8E-22 172.4 16.2 141 178-334 1-143 (481)
26 KOG0127|consensus 99.7 1.5E-17 3.3E-22 162.7 12.4 151 179-333 5-166 (678)
27 KOG4205|consensus 99.7 2.2E-17 4.7E-22 157.1 11.5 144 178-334 5-148 (311)
28 KOG0147|consensus 99.7 1E-16 2.2E-21 157.8 14.8 81 177-257 276-356 (549)
29 TIGR01659 sex-lethal sex-letha 99.7 1.2E-16 2.5E-21 156.2 13.0 119 142-260 148-276 (346)
30 KOG0109|consensus 99.7 3.1E-17 6.7E-22 149.6 7.9 120 180-335 3-122 (346)
31 KOG0123|consensus 99.7 1.7E-16 3.6E-21 156.0 11.9 125 180-336 2-126 (369)
32 KOG0110|consensus 99.7 3.2E-16 6.8E-21 158.2 11.7 148 180-336 516-666 (725)
33 KOG0123|consensus 99.7 6.2E-16 1.3E-20 152.0 13.5 179 142-334 36-217 (369)
34 PF00076 RRM_1: RNA recognitio 99.7 9E-16 2E-20 114.7 10.4 70 182-252 1-70 (70)
35 TIGR01645 half-pint poly-U bin 99.6 1.7E-15 3.6E-20 156.0 14.3 121 142-262 148-287 (612)
36 KOG0121|consensus 99.6 3.5E-16 7.5E-21 126.4 7.1 81 177-257 34-114 (153)
37 KOG0149|consensus 99.6 6.4E-16 1.4E-20 137.6 7.3 79 179-258 12-90 (247)
38 KOG0113|consensus 99.6 5.7E-15 1.2E-19 135.4 12.8 100 172-271 94-193 (335)
39 KOG0122|consensus 99.6 4.1E-15 8.8E-20 133.0 9.7 82 178-259 188-269 (270)
40 KOG0132|consensus 99.6 1.3E-14 2.9E-19 147.4 13.4 81 176-262 418-498 (894)
41 PF14259 RRM_6: RNA recognitio 99.6 2.1E-14 4.5E-19 107.7 10.0 70 182-252 1-70 (70)
42 KOG0107|consensus 99.6 7.8E-15 1.7E-19 125.0 8.2 79 178-261 9-87 (195)
43 KOG4206|consensus 99.6 3.9E-14 8.4E-19 126.0 12.3 147 178-335 8-193 (221)
44 KOG4207|consensus 99.5 6.9E-15 1.5E-19 128.3 6.8 87 175-261 9-95 (256)
45 KOG0126|consensus 99.5 1.7E-15 3.7E-20 129.5 1.4 84 177-260 33-116 (219)
46 COG0724 RNA-binding proteins ( 99.5 1.2E-13 2.6E-18 129.5 14.1 148 179-329 115-271 (306)
47 KOG0148|consensus 99.5 7.4E-14 1.6E-18 126.5 12.0 112 142-259 103-238 (321)
48 PLN03120 nucleic acid binding 99.5 5E-14 1.1E-18 129.7 10.7 77 179-259 4-80 (260)
49 KOG0125|consensus 99.5 3.3E-14 7.3E-19 131.9 8.9 84 174-259 91-174 (376)
50 KOG0130|consensus 99.5 2.5E-14 5.4E-19 116.7 6.9 88 174-261 67-154 (170)
51 KOG0105|consensus 99.5 1.3E-13 2.8E-18 118.3 10.8 127 177-306 4-141 (241)
52 PLN03213 repressor of silencin 99.5 1.3E-13 2.8E-18 133.9 10.0 78 177-258 8-87 (759)
53 KOG4212|consensus 99.5 8E-13 1.7E-17 126.8 15.0 162 177-343 42-274 (608)
54 KOG0111|consensus 99.5 4.3E-14 9.2E-19 124.4 5.1 87 177-263 8-94 (298)
55 smart00362 RRM_2 RNA recogniti 99.5 4.5E-13 9.9E-18 99.3 9.5 72 181-254 1-72 (72)
56 PLN03121 nucleic acid binding 99.5 4.4E-13 9.5E-18 121.6 10.6 77 178-258 4-80 (243)
57 KOG0144|consensus 99.4 1.8E-13 3.8E-18 131.2 7.6 120 142-262 75-209 (510)
58 KOG0131|consensus 99.4 4E-13 8.6E-18 115.3 8.8 121 141-261 49-179 (203)
59 smart00360 RRM RNA recognition 99.4 7.6E-13 1.6E-17 97.7 8.8 71 184-254 1-71 (71)
60 KOG0114|consensus 99.4 1.2E-12 2.5E-17 102.3 9.3 82 174-258 13-94 (124)
61 cd00590 RRM RRM (RNA recogniti 99.4 4.7E-12 1E-16 94.3 10.2 74 181-255 1-74 (74)
62 KOG0108|consensus 99.4 1.3E-12 2.9E-17 129.7 8.5 81 180-260 19-99 (435)
63 KOG0120|consensus 99.3 3.4E-12 7.3E-17 127.6 10.2 149 175-333 171-339 (500)
64 KOG4211|consensus 99.3 1.8E-11 3.9E-16 119.6 14.9 147 176-334 7-154 (510)
65 KOG0146|consensus 99.3 4.9E-12 1.1E-16 114.5 10.1 83 176-259 16-101 (371)
66 smart00361 RRM_1 RNA recogniti 99.3 1.9E-11 4.2E-16 91.7 8.6 61 193-253 2-69 (70)
67 KOG0415|consensus 99.3 1.1E-11 2.5E-16 116.1 8.9 88 173-260 233-320 (479)
68 KOG0146|consensus 99.3 4.8E-12 1E-16 114.6 5.8 87 175-261 281-367 (371)
69 KOG0120|consensus 99.3 5.4E-11 1.2E-15 119.0 13.8 158 177-334 287-463 (500)
70 PF13893 RRM_5: RNA recognitio 99.2 4.2E-11 9.2E-16 85.7 8.3 56 196-256 1-56 (56)
71 KOG0109|consensus 99.2 2.4E-11 5.2E-16 111.4 5.9 112 144-263 37-154 (346)
72 KOG1457|consensus 99.2 3E-10 6.6E-15 100.6 12.4 85 175-259 30-118 (284)
73 KOG0110|consensus 99.2 4.8E-11 1.1E-15 121.1 6.9 117 142-258 559-692 (725)
74 KOG4205|consensus 99.1 5.4E-11 1.2E-15 113.5 6.6 123 142-265 47-182 (311)
75 KOG0124|consensus 99.1 6.5E-10 1.4E-14 104.8 11.0 121 141-261 153-292 (544)
76 KOG0106|consensus 99.1 1.8E-10 3.8E-15 103.7 6.6 139 180-337 2-145 (216)
77 KOG4454|consensus 99.1 8.6E-11 1.9E-15 103.8 4.3 127 176-332 6-132 (267)
78 KOG0129|consensus 99.1 1.6E-09 3.5E-14 106.8 12.9 154 175-333 255-421 (520)
79 KOG4208|consensus 99.0 7.8E-10 1.7E-14 97.2 8.2 84 176-259 46-130 (214)
80 KOG4661|consensus 99.0 1.9E-09 4.2E-14 106.7 9.3 84 177-260 403-486 (940)
81 KOG1548|consensus 98.9 2.4E-08 5.2E-13 94.0 12.9 155 176-335 131-324 (382)
82 KOG0153|consensus 98.9 1.1E-08 2.5E-13 96.2 10.5 80 173-258 222-302 (377)
83 KOG4212|consensus 98.9 4.4E-09 9.6E-14 101.4 7.4 78 174-256 531-608 (608)
84 KOG0533|consensus 98.8 1.8E-08 3.9E-13 92.7 9.2 85 175-260 79-163 (243)
85 KOG1190|consensus 98.8 8.7E-08 1.9E-12 92.0 13.1 122 179-305 297-439 (492)
86 KOG4209|consensus 98.7 2.6E-08 5.6E-13 91.8 6.1 84 175-259 97-180 (231)
87 PF04059 RRM_2: RNA recognitio 98.6 2.2E-07 4.8E-12 73.6 9.3 81 180-260 2-88 (97)
88 KOG0116|consensus 98.6 7.2E-08 1.6E-12 95.6 7.2 80 178-258 287-366 (419)
89 KOG0226|consensus 98.6 4.7E-08 1E-12 88.5 4.9 83 176-258 187-269 (290)
90 KOG0151|consensus 98.5 2.9E-07 6.2E-12 93.9 8.4 82 177-258 172-256 (877)
91 KOG1190|consensus 98.5 1.2E-07 2.7E-12 90.9 5.2 76 177-258 26-103 (492)
92 KOG4660|consensus 98.4 1.7E-07 3.7E-12 93.5 4.2 72 176-252 72-143 (549)
93 KOG4210|consensus 98.4 1.7E-07 3.7E-12 89.3 4.0 149 178-334 87-236 (285)
94 KOG1995|consensus 98.2 1.4E-06 3E-11 83.0 4.6 85 176-260 63-155 (351)
95 KOG1365|consensus 98.2 2.1E-06 4.5E-11 82.0 5.7 153 181-336 163-335 (508)
96 KOG0149|consensus 98.2 2.7E-06 5.9E-11 76.6 6.0 55 277-334 9-63 (247)
97 KOG0128|consensus 98.2 2.5E-07 5.5E-12 96.2 -0.9 124 178-337 666-789 (881)
98 PLN03134 glycine-rich RNA-bind 98.1 4.5E-06 9.9E-11 71.7 6.3 56 277-335 31-86 (144)
99 KOG4211|consensus 98.1 2.2E-05 4.8E-10 77.6 10.7 112 143-256 49-179 (510)
100 KOG1456|consensus 98.0 5.9E-05 1.3E-09 72.1 11.3 143 172-334 24-168 (494)
101 KOG0126|consensus 97.9 6.6E-06 1.4E-10 71.2 2.9 51 280-333 35-85 (219)
102 KOG1457|consensus 97.9 9.4E-06 2E-10 72.4 3.9 68 175-246 206-273 (284)
103 KOG1456|consensus 97.9 0.00024 5.2E-09 68.0 13.1 79 176-259 284-363 (494)
104 PF11608 Limkain-b1: Limkain b 97.9 4.8E-05 1.1E-09 57.8 6.7 68 180-257 3-75 (90)
105 KOG4210|consensus 97.9 8.5E-06 1.8E-10 77.7 2.9 83 178-261 183-266 (285)
106 KOG4849|consensus 97.8 1.5E-05 3.3E-10 75.3 3.3 76 180-255 81-158 (498)
107 PF08777 RRM_3: RNA binding mo 97.8 4.4E-05 9.5E-10 61.8 5.4 59 180-244 2-60 (105)
108 KOG4206|consensus 97.7 0.00014 3.1E-09 65.4 8.2 78 175-257 142-220 (221)
109 KOG0106|consensus 97.7 2.4E-05 5.3E-10 70.7 3.4 72 177-256 97-168 (216)
110 COG5175 MOT2 Transcriptional r 97.7 0.0001 2.2E-09 69.6 7.2 82 178-259 113-203 (480)
111 KOG0112|consensus 97.6 1.9E-05 4E-10 83.1 1.7 133 175-334 368-500 (975)
112 KOG0122|consensus 97.5 0.00014 3.1E-09 65.9 4.9 53 279-334 188-240 (270)
113 PF00076 RRM_1: RNA recognitio 97.5 0.00017 3.7E-09 53.0 4.6 48 283-334 1-48 (70)
114 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00026 5.7E-09 49.8 5.3 52 180-238 2-53 (53)
115 KOG0113|consensus 97.4 0.00027 5.9E-09 65.9 5.9 54 278-334 99-152 (335)
116 KOG2314|consensus 97.4 0.00045 9.8E-09 69.5 7.5 78 177-255 56-140 (698)
117 KOG4207|consensus 97.4 0.00017 3.6E-09 63.9 3.9 54 278-334 11-64 (256)
118 KOG1365|consensus 97.3 0.0019 4.1E-08 62.2 10.9 151 179-334 60-215 (508)
119 KOG0121|consensus 97.3 0.00051 1.1E-08 56.4 5.6 53 279-334 35-87 (153)
120 KOG0129|consensus 97.3 0.00066 1.4E-08 67.8 7.4 68 173-240 364-432 (520)
121 PF14259 RRM_6: RNA recognitio 97.3 0.00049 1.1E-08 50.9 5.0 48 283-334 1-48 (70)
122 KOG4676|consensus 97.2 0.00053 1.1E-08 66.1 5.8 76 180-256 8-86 (479)
123 KOG4307|consensus 97.2 0.00088 1.9E-08 68.9 7.6 76 180-255 868-943 (944)
124 KOG2193|consensus 97.2 0.00016 3.4E-09 70.3 2.1 109 180-312 2-112 (584)
125 KOG0107|consensus 97.2 0.00038 8.2E-09 60.2 3.7 50 280-337 10-59 (195)
126 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.0021 4.5E-08 51.4 7.5 76 179-256 6-89 (100)
127 KOG0125|consensus 97.1 0.00075 1.6E-08 63.8 5.6 52 278-334 94-145 (376)
128 PLN03213 repressor of silencin 97.1 0.00059 1.3E-08 67.6 5.0 50 279-335 9-58 (759)
129 PLN03120 nucleic acid binding 97.1 0.00051 1.1E-08 63.9 4.4 49 280-334 4-52 (260)
130 KOG1548|consensus 97.1 0.0028 6.1E-08 60.4 9.1 81 174-258 260-351 (382)
131 KOG4368|consensus 97.0 0.0013 2.8E-08 66.4 6.6 6 199-204 726-731 (757)
132 KOG3152|consensus 97.0 0.00054 1.2E-08 62.7 3.5 73 178-250 73-157 (278)
133 KOG0105|consensus 97.0 0.0065 1.4E-07 53.1 9.5 68 179-253 115-184 (241)
134 KOG1855|consensus 97.0 0.00058 1.3E-08 66.6 3.5 70 176-245 228-310 (484)
135 KOG0111|consensus 97.0 0.00049 1.1E-08 61.5 2.7 55 278-335 8-62 (298)
136 KOG0226|consensus 96.9 0.00068 1.5E-08 62.0 2.9 143 179-334 96-241 (290)
137 PF08952 DUF1866: Domain of un 96.8 0.0051 1.1E-07 52.2 7.7 73 177-258 25-106 (146)
138 COG0724 RNA-binding proteins ( 96.8 0.0024 5.2E-08 59.3 6.0 52 280-334 115-166 (306)
139 KOG0114|consensus 96.8 0.0029 6.3E-08 50.1 5.2 52 277-334 15-66 (124)
140 PLN03121 nucleic acid binding 96.7 0.0019 4.2E-08 59.2 4.6 49 280-334 5-53 (243)
141 KOG0108|consensus 96.6 0.0015 3.3E-08 65.6 3.6 51 281-334 19-69 (435)
142 KOG0128|consensus 96.6 0.0024 5.1E-08 67.4 4.9 108 141-258 707-814 (881)
143 KOG2416|consensus 96.6 0.0018 3.9E-08 65.7 3.7 78 175-258 440-521 (718)
144 PF08675 RNA_bind: RNA binding 96.5 0.013 2.8E-07 44.8 7.0 58 177-243 7-64 (87)
145 KOG2202|consensus 96.5 0.0013 2.8E-08 60.4 1.6 61 195-256 84-145 (260)
146 KOG4307|consensus 96.4 0.011 2.5E-07 61.1 7.9 151 179-334 311-485 (944)
147 KOG0112|consensus 96.3 0.0064 1.4E-07 64.6 5.9 80 175-260 451-532 (975)
148 smart00362 RRM_2 RNA recogniti 96.1 0.012 2.6E-07 42.4 5.1 48 282-334 1-48 (72)
149 smart00360 RRM RNA recognition 96.1 0.011 2.5E-07 42.3 5.0 47 285-334 1-47 (71)
150 KOG0130|consensus 96.1 0.0022 4.7E-08 53.2 0.9 55 277-334 69-123 (170)
151 KOG1996|consensus 95.7 0.031 6.8E-07 52.3 7.0 64 193-256 300-364 (378)
152 PF10309 DUF2414: Protein of u 95.7 0.061 1.3E-06 38.9 6.8 55 179-241 5-62 (62)
153 cd00590 RRM RRM (RNA recogniti 95.6 0.027 6E-07 40.7 5.3 49 282-334 1-49 (74)
154 KOG4208|consensus 95.5 0.022 4.8E-07 50.8 5.1 55 278-334 47-101 (214)
155 KOG2068|consensus 95.3 0.0095 2.1E-07 56.9 1.9 81 178-259 76-163 (327)
156 KOG0115|consensus 95.3 0.021 4.5E-07 52.5 4.0 75 180-255 32-110 (275)
157 smart00361 RRM_1 RNA recogniti 95.2 0.034 7.4E-07 41.2 4.4 38 295-334 3-46 (70)
158 KOG0835|consensus 95.0 0.083 1.8E-06 50.4 7.4 8 20-27 270-277 (367)
159 PF03467 Smg4_UPF3: Smg-4/UPF3 95.0 0.038 8.2E-07 49.1 4.8 82 178-259 6-98 (176)
160 KOG2135|consensus 94.7 0.017 3.8E-07 57.3 2.2 73 180-259 373-446 (526)
161 PF15023 DUF4523: Protein of u 94.6 0.18 3.9E-06 42.5 7.6 74 175-256 82-159 (166)
162 KOG0415|consensus 94.6 0.049 1.1E-06 52.3 4.7 54 278-334 237-290 (479)
163 KOG4574|consensus 94.3 0.034 7.3E-07 58.9 3.3 80 180-265 299-380 (1007)
164 PF07576 BRAP2: BRCA1-associat 93.5 0.68 1.5E-05 37.7 8.8 67 180-248 14-81 (110)
165 KOG4660|consensus 93.5 0.11 2.4E-06 52.8 5.0 83 178-260 387-474 (549)
166 PF03880 DbpA: DbpA RNA bindin 92.9 0.48 1E-05 35.6 6.7 59 189-256 11-74 (74)
167 KOG4285|consensus 92.8 0.33 7.1E-06 45.9 6.6 71 180-258 198-269 (350)
168 KOG2253|consensus 92.6 0.071 1.5E-06 55.2 2.2 73 174-255 35-107 (668)
169 PF04847 Calcipressin: Calcipr 91.9 0.45 9.8E-06 42.5 6.2 62 192-259 8-71 (184)
170 KOG1847|consensus 91.6 0.11 2.4E-06 53.5 2.2 9 72-80 748-756 (878)
171 KOG4209|consensus 91.1 0.22 4.7E-06 46.2 3.6 55 277-334 98-152 (231)
172 KOG4661|consensus 91.0 0.24 5.2E-06 50.4 3.9 56 280-338 405-460 (940)
173 KOG0132|consensus 90.6 0.37 8.1E-06 51.0 5.0 47 278-333 419-465 (894)
174 KOG1847|consensus 90.5 0.4 8.6E-06 49.6 5.0 12 182-193 848-859 (878)
175 PF04059 RRM_2: RNA recognitio 90.5 0.56 1.2E-05 37.3 4.8 53 281-334 2-54 (97)
176 KOG2591|consensus 90.3 0.48 1E-05 48.3 5.3 71 176-253 172-246 (684)
177 PF13893 RRM_5: RNA recognitio 89.6 0.31 6.8E-06 34.0 2.6 30 300-334 1-30 (56)
178 KOG0804|consensus 89.4 1.1 2.4E-05 44.7 6.9 68 179-248 74-142 (493)
179 KOG0116|consensus 89.3 0.46 1E-05 47.8 4.4 54 281-337 289-342 (419)
180 KOG4454|consensus 89.0 0.19 4.2E-06 45.3 1.3 52 277-333 6-57 (267)
181 KOG2193|consensus 88.6 0.036 7.7E-07 54.4 -3.8 112 143-258 37-156 (584)
182 KOG0533|consensus 88.5 1.3 2.7E-05 41.3 6.4 53 278-334 81-133 (243)
183 KOG0153|consensus 88.0 0.62 1.3E-05 44.9 4.1 50 276-334 224-273 (377)
184 KOG0115|consensus 88.0 0.72 1.6E-05 42.7 4.3 76 233-334 6-81 (275)
185 KOG0670|consensus 86.3 0.8 1.7E-05 46.9 3.9 14 293-306 516-529 (752)
186 KOG0670|consensus 85.9 1.2 2.6E-05 45.8 4.9 6 313-318 462-467 (752)
187 PF11767 SET_assoc: Histone ly 81.8 9.9 0.00021 27.9 7.1 55 190-253 11-65 (66)
188 PF07292 NID: Nmi/IFP 35 domai 81.3 1.6 3.5E-05 34.0 2.9 70 224-300 1-72 (88)
189 KOG2146|consensus 73.4 19 0.0004 34.1 7.9 6 2-7 104-109 (354)
190 KOG2318|consensus 72.9 18 0.0004 37.5 8.5 81 176-256 171-305 (650)
191 PF10567 Nab6_mRNP_bdg: RNA-re 64.0 17 0.00036 34.6 5.7 83 175-257 11-106 (309)
192 KOG4246|consensus 63.0 11 0.00023 40.7 4.7 8 293-300 537-544 (1194)
193 PF03468 XS: XS domain; Inter 59.2 12 0.00027 30.6 3.6 55 181-238 10-74 (116)
194 KOG2135|consensus 58.0 26 0.00057 35.5 6.2 75 189-271 207-281 (526)
195 KOG1995|consensus 57.7 7.2 0.00016 38.0 2.2 54 278-334 64-125 (351)
196 PF02956 TT_ORF1: TT viral orf 55.3 12 0.00026 39.1 3.6 6 194-199 119-124 (525)
197 KOG4849|consensus 54.8 5.5 0.00012 38.5 0.9 53 280-333 80-132 (498)
198 KOG4483|consensus 54.8 27 0.00058 34.7 5.5 55 178-239 390-445 (528)
199 PF07530 PRE_C2HC: Associated 53.1 27 0.00059 25.7 4.2 62 194-258 2-64 (68)
200 KOG3152|consensus 48.8 15 0.00033 34.2 2.7 33 279-311 73-105 (278)
201 KOG1855|consensus 48.3 12 0.00027 37.3 2.1 40 276-318 227-266 (484)
202 KOG2295|consensus 45.7 3.2 7E-05 42.6 -2.3 71 177-247 229-299 (648)
203 KOG2891|consensus 45.4 29 0.00063 32.7 4.0 37 177-213 147-195 (445)
204 KOG4019|consensus 44.9 18 0.00039 32.0 2.4 76 179-260 10-91 (193)
205 smart00596 PRE_C2HC PRE_C2HC d 44.9 37 0.0008 25.1 3.7 61 194-257 2-63 (69)
206 KOG4365|consensus 40.6 4.6 0.0001 40.3 -2.0 77 180-257 4-80 (572)
207 KOG4008|consensus 39.2 18 0.00039 33.3 1.6 36 174-209 35-70 (261)
208 KOG1295|consensus 38.2 41 0.0009 33.2 4.0 69 178-246 6-77 (376)
209 COG5638 Uncharacterized conser 37.3 1.5E+02 0.0032 29.7 7.6 41 172-212 139-184 (622)
210 PRK14548 50S ribosomal protein 30.8 1.7E+02 0.0037 22.5 5.6 56 182-240 23-80 (84)
211 KOG3869|consensus 29.6 54 0.0012 32.8 3.3 11 191-201 361-371 (450)
212 KOG2314|consensus 28.5 72 0.0016 33.3 4.0 54 280-335 58-115 (698)
213 COG5193 LHP1 La protein, small 28.2 25 0.00054 34.9 0.7 59 180-238 175-243 (438)
214 TIGR03636 L23_arch archaeal ri 28.0 2.2E+02 0.0047 21.5 5.7 57 181-240 15-73 (77)
215 PF15513 DUF4651: Domain of un 28.0 1.3E+02 0.0029 21.7 4.2 19 194-212 9-27 (62)
216 PF14111 DUF4283: Domain of un 26.9 52 0.0011 27.7 2.5 68 181-257 17-90 (153)
217 PF09707 Cas_Cas2CT1978: CRISP 25.7 1.3E+02 0.0028 23.3 4.2 48 179-229 25-72 (86)
218 PF02714 DUF221: Domain of unk 25.5 71 0.0015 30.8 3.4 31 224-256 1-31 (325)
219 PF00403 HMA: Heavy-metal-asso 25.2 2.4E+02 0.0051 19.5 6.3 54 181-240 1-58 (62)
220 CHL00123 rps6 ribosomal protei 22.5 3.2E+02 0.007 21.4 6.0 59 180-240 9-81 (97)
221 KOG4213|consensus 22.1 1.1E+02 0.0024 27.1 3.4 55 180-240 112-169 (205)
222 KOG2416|consensus 21.4 83 0.0018 33.0 3.0 49 278-335 442-491 (718)
223 PRK11901 hypothetical protein; 20.7 2E+02 0.0043 28.0 5.2 54 190-245 253-308 (327)
224 PF07292 NID: Nmi/IFP 35 domai 20.3 55 0.0012 25.5 1.2 24 178-201 51-74 (88)
No 1
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.96 E-value=7.4e-29 Score=253.07 Aligned_cols=152 Identities=23% Similarity=0.263 Sum_probs=124.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy4080 176 PQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDF 255 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~ 255 (403)
....++|||+|||..+|+++|+++|++||.|.+|.|+.++.++.++|||||+|.+.++|.+|| .|+|..|.|++|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEEee
Confidence 455789999999999999999999999999999999999999999999999999999999999 5899999999999998
Q ss_pred ccCCCCCCCCCCcCCCCCCcccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 256 SVTQRAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 256 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
+.............. ........+|||+||+..+++.++.++|+.|| .|..|.++.+..++.++|||||+|..
T Consensus 165 ~~~~~~~~~~~~~~~---~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G---~i~~v~~~~d~~~g~~~g~afV~f~~ 237 (457)
T TIGR01622 165 SQAEKNRAAKAATHQ---PGDIPNFLKLYVGNLHFNITEQELRQIFEPFG---DIEDVQLHRDPETGRSKGFGFIQFHD 237 (457)
T ss_pred cchhhhhhhhccccc---CCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcC---CeEEEEEEEcCCCCccceEEEEEECC
Confidence 755433221111100 01112367899999999888877766666555 56677888888888999999999975
No 2
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.94 E-value=2.7e-25 Score=226.81 Aligned_cols=116 Identities=28% Similarity=0.404 Sum_probs=96.6
Q ss_pred CCCCceeeeechhhHHHHHHHHHhH---------------hh----hhCCCCCCCCCCEEEEcCCCCCCcHHHHHHHhhc
Q psy4080 142 YGGRGKIIIAVVTEVEEEAEATAMV---------------EE----FADGRENPQPSRCLGVFGLSIYTTEQQINHIFSK 202 (403)
Q Consensus 142 ~~g~g~~~~~~~~~~~~~~~~~~~~---------------~~----~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~ 202 (403)
..|++||.|...+++..++...... .. ........+..++|||+|||..+|+++|+++|++
T Consensus 130 skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~ 209 (457)
T TIGR01622 130 SKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEP 209 (457)
T ss_pred cceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHh
Confidence 4689999999999988887532100 00 0000111233689999999999999999999999
Q ss_pred CCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy4080 203 YGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSV 257 (403)
Q Consensus 203 ~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~ 257 (403)
||.|..|.|+.++.+|.++|||||+|.+.++|.+||+.|||..|.|++|.|.++.
T Consensus 210 ~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 210 FGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred cCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 9999999999999999999999999999999999999999999999999999965
No 3
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.93 E-value=1.8e-25 Score=217.90 Aligned_cols=142 Identities=19% Similarity=0.282 Sum_probs=123.8
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
.....++|||+|||+++||++|+++|+.||+|++|+|+.|+.|++++|||||+|.++++|++||+.|++..|.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCCCCCcCCCCCCcccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 255 FSVTQRAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 255 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
++.+.. ......+|||+||+..+++++|+++|+.|| .|+.|.++.+..++.+++++||+|+.
T Consensus 183 ~a~p~~---------------~~~~~~~lfV~nLp~~vtee~L~~~F~~fG---~V~~v~i~~d~~tg~~kG~aFV~F~~ 244 (346)
T TIGR01659 183 YARPGG---------------ESIKDTNLYVTNLPRTITDDQLDTIFGKYG---QIVQKNILRDKLTGTPRGVAFVRFNK 244 (346)
T ss_pred cccccc---------------cccccceeEEeCCCCcccHHHHHHHHHhcC---CEEEEEEeecCCCCccceEEEEEECC
Confidence 985432 122356799999999988877666665554 66777888888899999999999964
No 4
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.93 E-value=6.9e-24 Score=219.31 Aligned_cols=157 Identities=13% Similarity=0.187 Sum_probs=120.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy4080 178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSV 257 (403)
Q Consensus 178 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~ 257 (403)
..++|||+|||..+|+++|+++|+.||.|..+.|+.+..+|.++|||||+|.+.++|..||+.|+|..|.|+.|.|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCcC--------CCC-----CCcccCCCceeeeCCCCCc-------cccchHHHHHHhcCCcceEEEEEEee
Q psy4080 258 TQRAHTPTPGIY--------MGR-----PTYEQLNNTQSELGSLLSE-------KHAIKGGKFEEVFGEIATVVGVGAVT 317 (403)
Q Consensus 258 ~~~~~~~~~~~~--------~~~-----~~~~~~~~~~~~vg~l~~~-------~~~~~~~~l~~~Fg~~g~v~~v~~~~ 317 (403)
............ ... ..........+++.||... .++..+++|.+.|+.||.|+.|.|++
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~ 453 (509)
T TIGR01642 374 VGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPR 453 (509)
T ss_pred cCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeec
Confidence 543221110000 000 0011223466788888542 12334567888888888999988886
Q ss_pred eC---CCCCCcceeeeeecc
Q psy4080 318 MT---EMSGNGRISPLQFSG 334 (403)
Q Consensus 318 ~~---~~~~~~g~~fv~f~~ 334 (403)
.. .+....|++||+|+.
T Consensus 454 ~~~~~~~~~~~G~~fV~F~~ 473 (509)
T TIGR01642 454 PNGDRNSTPGVGKVFLEYAD 473 (509)
T ss_pred cCcCCCcCCCcceEEEEECC
Confidence 42 334557889999974
No 5
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.92 E-value=1.5e-23 Score=216.91 Aligned_cols=150 Identities=14% Similarity=0.134 Sum_probs=110.7
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcC------------CCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhC
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKY------------GPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACT 242 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~------------G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~ 242 (403)
.....++|||||||+.+|+++|.++|.++ +.|..+.+ +..+|||||+|.+.++|..|| +|+
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al-~l~ 243 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAM-ALD 243 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhh-cCC
Confidence 34557899999999999999999999975 23444443 345789999999999999999 699
Q ss_pred CceeCCeEEEEEeccCCCCCC--------CCCCcCCC------CCCcccCCCceeeeCCCCCccccchHHHHHHhcCCcc
Q psy4080 243 GMEIDGRQIRVDFSVTQRAHT--------PTPGIYMG------RPTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIA 308 (403)
Q Consensus 243 g~~l~g~~i~V~~a~~~~~~~--------~~~~~~~~------~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g 308 (403)
|..|.|+.|+|.......... ..+..... ..........+|||+||+..+++.++.++|+.||
T Consensus 244 g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G--- 320 (509)
T TIGR01642 244 SIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFG--- 320 (509)
T ss_pred CeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC---
Confidence 999999999997654322110 00000000 0011123457899999999988888777777766
Q ss_pred eEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 309 TVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 309 ~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.|..+.++++..++.++|||||+|..
T Consensus 321 ~i~~~~~~~~~~~g~~~g~afv~f~~ 346 (509)
T TIGR01642 321 DLKAFNLIKDIATGLSKGYAFCEYKD 346 (509)
T ss_pred CeeEEEEEecCCCCCcCeEEEEEECC
Confidence 56677888888899999999999964
No 6
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.91 E-value=2.4e-23 Score=213.46 Aligned_cols=152 Identities=20% Similarity=0.284 Sum_probs=124.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy4080 176 PQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDF 255 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~ 255 (403)
....++|||+|||+++++++|+++|.+||+|.+|.|+.|+.|++++|||||+|.+.++|++||+.|||..|+|+.|+|.+
T Consensus 104 ~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 104 LAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred ccCCCCCCCCCCcCCCCCCcccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 256 SVTQRAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 256 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
........+ .............+|||+||+..+++++++++|+.|| .|+.+.++++..++.++||+||+|..
T Consensus 184 p~~~p~a~~----~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG---~I~svrl~~D~~tgksKGfGFVeFe~ 255 (612)
T TIGR01645 184 PSNMPQAQP----IIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFG---EIVKCQLARAPTGRGHKGYGFIEYNN 255 (612)
T ss_pred ccccccccc----ccccccccccccceEEeecCCCCCCHHHHHHHHhhcC---CeeEEEEEecCCCCCcCCeEEEEECC
Confidence 543221111 0011111222346899999999988887777766655 67788899998899999999999975
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.90 E-value=4.5e-23 Score=203.36 Aligned_cols=140 Identities=19% Similarity=0.292 Sum_probs=121.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy4080 178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSV 257 (403)
Q Consensus 178 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~ 257 (403)
+..+|||+|||.++||++|+++|+.||+|.+|+|+.|+.+|+++|||||+|.+.++|.+||+.|||..|.|+.|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCcCCCCCCcccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeeccc
Q psy4080 258 TQRAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSGG 335 (403)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~a 335 (403)
+... ......+||+||+..+++.+++++|+.|| .|..+.++.+..++.++|++||+|+..
T Consensus 82 ~~~~---------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G---~i~~~~~~~~~~~~~~~g~~fv~f~~~ 141 (352)
T TIGR01661 82 PSSD---------------SIKGANLYVSGLPKTMTQHELESIFSPFG---QIITSRILSDNVTGLSKGVGFIRFDKR 141 (352)
T ss_pred cccc---------------ccccceEEECCccccCCHHHHHHHHhccC---CEEEEEEEecCCCCCcCcEEEEEECCH
Confidence 4321 12345799999999987777666666555 566777888777888999999999643
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.89 E-value=4.6e-22 Score=196.17 Aligned_cols=190 Identities=18% Similarity=0.218 Sum_probs=140.5
Q ss_pred CCCCceeeeechhhHHHHHHHHHhHhh--------hhCCCCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEe
Q psy4080 142 YGGRGKIIIAVVTEVEEEAEATAMVEE--------FADGRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVI 213 (403)
Q Consensus 142 ~~g~g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~ 213 (403)
..||+|+.|...++++.+........- ...........++|||+|||..+++++|+++|.+||.|..+.++.
T Consensus 44 s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~ 123 (352)
T TIGR01661 44 SLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILS 123 (352)
T ss_pred cceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEe
Confidence 458999999999999888875432110 011122233567899999999999999999999999999999999
Q ss_pred eCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC--eEEEEEeccCCCCCCCC-----------CCcCC----------
Q psy4080 214 DAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDG--RQIRVDFSVTQRAHTPT-----------PGIYM---------- 270 (403)
Q Consensus 214 d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g--~~i~V~~a~~~~~~~~~-----------~~~~~---------- 270 (403)
+..++.++|||||+|.+.++|+.||+.|||..+.| .+|.|.++......... +....
T Consensus 124 ~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (352)
T TIGR01661 124 DNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAA 203 (352)
T ss_pred cCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCcccccccc
Confidence 98899999999999999999999999999999877 67888887644311000 00000
Q ss_pred -----------------------------------------CC---------------CCcccCCCceeeeCCCCCcccc
Q psy4080 271 -----------------------------------------GR---------------PTYEQLNNTQSELGSLLSEKHA 294 (403)
Q Consensus 271 -----------------------------------------~~---------------~~~~~~~~~~~~vg~l~~~~~~ 294 (403)
.. ..........|||+||+..+++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e 283 (352)
T TIGR01661 204 GIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDE 283 (352)
T ss_pred CCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCH
Confidence 00 0000111225999999988666
Q ss_pred chHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 295 IKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 295 ~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.+|.++ |+.||.|+.|.++++..++.++|||||+|..
T Consensus 284 ~~L~~~---F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~ 320 (352)
T TIGR01661 284 TVLWQL---FGPFGAVQNVKIIRDLTTNQCKGYGFVSMTN 320 (352)
T ss_pred HHHHHH---HHhCCCeEEEEEeEcCCCCCccceEEEEECC
Confidence 665555 5555677788899998899999999999974
No 9
>KOG0147|consensus
Probab=99.86 E-value=2.2e-22 Score=197.33 Aligned_cols=153 Identities=18% Similarity=0.225 Sum_probs=125.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy4080 177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFS 256 (403)
Q Consensus 177 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a 256 (403)
...++||+-.|+..+++-+|.+||+.+|.|.+|.|+.|+.++.++|.|||+|.+.+.+..|| +|.|..+.|.+|.|...
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLS 255 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEeccc
Confidence 44689999999999999999999999999999999999999999999999999999999999 89999999999999987
Q ss_pred cCCCCCCCCCCcCCCCCCcccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 257 VTQRAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
...+..........+.... ......++||||+.++++.++..+|+.||.|. .|.+..|.+++.++||+|++|..
T Consensus 256 Eaeknr~a~~s~a~~~k~~-~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie---~v~l~~d~~tG~skgfGfi~f~~ 329 (549)
T KOG0147|consen 256 EAEKNRAANASPALQGKGF-TGPMRRLYVGNLHFNITEDMLRGIFEPFGKIE---NVQLTKDSETGRSKGFGFITFVN 329 (549)
T ss_pred HHHHHHHHhcccccccccc-ccchhhhhhcccccCchHHHHhhhccCcccce---eeeeccccccccccCcceEEEec
Confidence 6655443332222111000 01112289999999999999999988888666 45578888899999999999964
No 10
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.86 E-value=4.4e-21 Score=200.73 Aligned_cols=137 Identities=22% Similarity=0.233 Sum_probs=115.9
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccCCC
Q psy4080 181 CLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVTQR 260 (403)
Q Consensus 181 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~~~~ 260 (403)
+|||+|||+++||++|.++|++||+|.+|+|++|..|++++|||||+|.+.++|++||+.|++..|.|+.|+|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999975332
Q ss_pred CCCCCCCcCCCCCCcccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 261 AHTPTPGIYMGRPTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
. ........|||+||+..+++.++.++|+.| |.|+.|.++++ .++.++|+|||+|..
T Consensus 82 ~-------------~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~---G~i~~~~i~~~-~~g~skg~afV~F~~ 138 (562)
T TIGR01628 82 S-------------LRRSGVGNIFVKNLDKSVDNKALFDTFSKF---GNILSCKVATD-ENGKSRGYGFVHFEK 138 (562)
T ss_pred c-------------ccccCCCceEEcCCCccCCHHHHHHHHHhc---CCcceeEeeec-CCCCcccEEEEEECC
Confidence 1 111224579999999887776655555555 56667778876 567789999999965
No 11
>KOG0145|consensus
Probab=99.86 E-value=1.5e-21 Score=174.82 Aligned_cols=144 Identities=19% Similarity=0.296 Sum_probs=127.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy4080 177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFS 256 (403)
Q Consensus 177 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a 256 (403)
...+.|.|.-||.++|+++|+.+|...|+|++|++++|+.+|++.||+||.|-++++|++|+..|||..|..+.|+|.||
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCcCCCCCCcccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecccc
Q psy4080 257 VTQRAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSGGM 336 (403)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~a~ 336 (403)
.+. .....+..+||.+||++.+..++++||..||.| ..-+|..|.-++.++|++|+.|...+
T Consensus 119 RPS---------------s~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrI---ItSRiL~dqvtg~srGVgFiRFDKr~ 180 (360)
T KOG0145|consen 119 RPS---------------SDSIKDANLYVSGLPKTMTQKELEQIFSPFGRI---ITSRILVDQVTGLSRGVGFIRFDKRI 180 (360)
T ss_pred cCC---------------hhhhcccceEEecCCccchHHHHHHHHHHhhhh---hhhhhhhhcccceecceeEEEecchh
Confidence 653 334566779999999998888888888887755 45567778889999999999998766
Q ss_pred cc
Q psy4080 337 EN 338 (403)
Q Consensus 337 e~ 338 (403)
|+
T Consensus 181 EA 182 (360)
T KOG0145|consen 181 EA 182 (360)
T ss_pred HH
Confidence 64
No 12
>KOG0144|consensus
Probab=99.85 E-value=2.4e-21 Score=184.55 Aligned_cols=140 Identities=21% Similarity=0.321 Sum_probs=120.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCce-eCC--eEEEE
Q psy4080 177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGME-IDG--RQIRV 253 (403)
Q Consensus 177 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~-l~g--~~i~V 253 (403)
...-+||||.||..++|.||+++|++||.|.+|.|++|+.|+.++|||||+|.+.++|.+|+.+|+... |.| .+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 445689999999999999999999999999999999999999999999999999999999999998866 554 78999
Q ss_pred EeccCCCCCCCCCCcCCCCCCcccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeec
Q psy4080 254 DFSVTQRAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFS 333 (403)
Q Consensus 254 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~ 333 (403)
++|.....+. ..+.++|||.|++.++|.++++||..||.|+ .|.|.++ ..+.++|++||.|+
T Consensus 112 k~Ad~E~er~--------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ie---d~~ilrd-~~~~sRGcaFV~fs 173 (510)
T KOG0144|consen 112 KYADGERERI--------------VEERKLFVGMLSKQCTENEVREIFSRFGHIE---DCYILRD-PDGLSRGCAFVKFS 173 (510)
T ss_pred cccchhhhcc--------------ccchhhhhhhccccccHHHHHHHHHhhCccc---hhhheec-ccccccceeEEEEe
Confidence 9987655422 3467899999999999999888888887666 4557766 67889999999996
Q ss_pred c
Q psy4080 334 G 334 (403)
Q Consensus 334 ~ 334 (403)
.
T Consensus 174 t 174 (510)
T KOG0144|consen 174 T 174 (510)
T ss_pred h
Confidence 3
No 13
>KOG0148|consensus
Probab=99.84 E-value=1.2e-20 Score=170.24 Aligned_cols=147 Identities=21% Similarity=0.264 Sum_probs=117.9
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q psy4080 179 SRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVT 258 (403)
Q Consensus 179 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~~ 258 (403)
..-|||+.|...++.+.|++.|.+||+|.+++|++|..|+++|||+||.|-+.++|+.||..|||.-|.++.|+..||..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCC-cCCCCCCcccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 259 QRAHTPTPG-IYMGRPTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 259 ~~~~~~~~~-~~~~~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
++....... .|-.--......++++|||||..-++++.+++.|..||.|. .|++.++ +|++||-|+.
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~---EVRvFk~------qGYaFVrF~t 209 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQ---EVRVFKD------QGYAFVRFET 209 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcce---EEEEecc------cceEEEEecc
Confidence 763222211 11111112234568999999999777777666666666554 5555553 6899999964
No 14
>KOG0145|consensus
Probab=99.84 E-value=1.1e-20 Score=169.37 Aligned_cols=190 Identities=19% Similarity=0.235 Sum_probs=147.5
Q ss_pred CCCCceeeeechhhHHHHHHHHHhHh--------hhhCCCCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEe
Q psy4080 142 YGGRGKIIIAVVTEVEEEAEATAMVE--------EFADGRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVI 213 (403)
Q Consensus 142 ~~g~g~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~ 213 (403)
.=|||||.+..+++++++....+-.. ..............|||.+||..+|..+|.++|++||.|...+|..
T Consensus 82 SLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~ 161 (360)
T KOG0145|consen 82 SLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILV 161 (360)
T ss_pred ccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhh
Confidence 35799999999999999887654211 1122334455678899999999999999999999999999999999
Q ss_pred eCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC--eEEEEEeccCCCCCCCC---------C-CcC------------
Q psy4080 214 DAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDG--RQIRVDFSVTQRAHTPT---------P-GIY------------ 269 (403)
Q Consensus 214 d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g--~~i~V~~a~~~~~~~~~---------~-~~~------------ 269 (403)
|..||.++|.+||.|...++|+.||+.|||+.-.| .+|.|++|......... + ..+
T Consensus 162 dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r 241 (360)
T KOG0145|consen 162 DQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFR 241 (360)
T ss_pred hcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhc
Confidence 99999999999999999999999999999998665 68999998765322100 0 000
Q ss_pred --------------------------CCCCCcccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCC
Q psy4080 270 --------------------------MGRPTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSG 323 (403)
Q Consensus 270 --------------------------~~~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~ 323 (403)
....+......-.+||-||... .++.-||+.||+||-|+.|.+++|-.+.+
T Consensus 242 ~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd---~de~~LWQlFgpFGAv~nVKvirD~ttnk 318 (360)
T KOG0145|consen 242 LDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPD---ADESILWQLFGPFGAVTNVKVIRDFTTNK 318 (360)
T ss_pred cccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCC---chHhHHHHHhCcccceeeEEEEecCCccc
Confidence 0011112223456888888665 55566888999999999999999999999
Q ss_pred Ccceeeeeecc
Q psy4080 324 NGRISPLQFSG 334 (403)
Q Consensus 324 ~~g~~fv~f~~ 334 (403)
+|||+||....
T Consensus 319 CKGfgFVtMtN 329 (360)
T KOG0145|consen 319 CKGFGFVTMTN 329 (360)
T ss_pred ccceeEEEecc
Confidence 99999998854
No 15
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.83 E-value=4.4e-20 Score=193.18 Aligned_cols=188 Identities=19% Similarity=0.215 Sum_probs=141.9
Q ss_pred CCCCceeeeechhhHHHHHHHHHhHh-------------hhhCCCCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEE
Q psy4080 142 YGGRGKIIIAVVTEVEEEAEATAMVE-------------EFADGRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVER 208 (403)
Q Consensus 142 ~~g~g~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~ 208 (403)
..|++|+.|...+.+..+.+...-.. ............++|||+|||.++|+++|+++|+.||.|.+
T Consensus 128 skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~ 207 (562)
T TIGR01628 128 SRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITS 207 (562)
T ss_pred cccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEE
Confidence 46899999999999888876543110 00000112344578999999999999999999999999999
Q ss_pred EEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC----CeEEEEEeccCCCCCCCCCCcCC---CCCCcccCCCc
Q psy4080 209 VEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEID----GRQIRVDFSVTQRAHTPTPGIYM---GRPTYEQLNNT 281 (403)
Q Consensus 209 v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~----g~~i~V~~a~~~~~~~~~~~~~~---~~~~~~~~~~~ 281 (403)
+.++.+ .++.++|||||+|.+.++|.+|++.|+|..|. |+.|.|.++..+........... ...........
T Consensus 208 ~~i~~~-~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~ 286 (562)
T TIGR01628 208 AAVMKD-GSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGV 286 (562)
T ss_pred EEEEEC-CCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCC
Confidence 999998 57899999999999999999999999999999 99999998866543211100000 00011123456
Q ss_pred eeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 282 QSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 282 ~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
+|||+||+..++++++.++|+.|| .|+.|.++.+ .++.++||+||.|+.
T Consensus 287 ~l~V~nl~~~~~~~~L~~~F~~~G---~i~~~~i~~d-~~g~~~g~gfV~f~~ 335 (562)
T TIGR01628 287 NLYVKNLDDTVTDEKLRELFSECG---EITSAKVMLD-EKGVSRGFGFVCFSN 335 (562)
T ss_pred EEEEeCCCCccCHHHHHHHHHhcC---CeEEEEEEEC-CCCCcCCeEEEEeCC
Confidence 799999999988877777666665 5667778877 788999999999975
No 16
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.83 E-value=5.9e-20 Score=188.34 Aligned_cols=136 Identities=21% Similarity=0.252 Sum_probs=109.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC-CeEEEEE
Q psy4080 176 PQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEID-GRQIRVD 254 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~-g~~i~V~ 254 (403)
+...++|||+|||++++|++|+++|++||.|.+|+|++| .+|.++|||||+|.+.++|++||+.||+..|. |+.|.|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 445699999999999999999999999999999999999 89999999999999999999999999999984 7777776
Q ss_pred eccCCCCCCCCCCcCCCCCCcccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 255 FSVTQRAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 255 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
++ ....+|||+||+...++.++.+.|..|++. .+..+.+....+...+++|+||+|..
T Consensus 134 ~S---------------------~~~~rLFVgNLP~~~TeeeL~eeFskv~eg-vv~vIv~~~~~~kgKnRGFAFVeF~s 191 (578)
T TIGR01648 134 IS---------------------VDNCRLFVGGIPKNKKREEILEEFSKVTEG-VVDVIVYHSAADKKKNRGFAFVEYES 191 (578)
T ss_pred cc---------------------ccCceeEeecCCcchhhHHHHHHhhcccCC-ceEEEEeccccccCccCceEEEEcCC
Confidence 54 124679999999987777766665555431 12223333334566789999999975
No 17
>KOG0117|consensus
Probab=99.82 E-value=1.5e-19 Score=173.20 Aligned_cols=137 Identities=20% Similarity=0.308 Sum_probs=114.8
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCcee-CCeEEE
Q psy4080 174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEI-DGRQIR 252 (403)
Q Consensus 174 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l-~g~~i~ 252 (403)
..+..++.||||.||.++.|++|.-+|++.|+|-+++|++|+.+|.++|||||+|.+.++|++||+.||+.+| .|+.|.
T Consensus 78 ~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~ig 157 (506)
T KOG0117|consen 78 PPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLG 157 (506)
T ss_pred CCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeE
Confidence 3456789999999999999999999999999999999999999999999999999999999999999999997 689999
Q ss_pred EEeccCCCCCCCCCCcCCCCCCcccCCCceeeeCCCCCccccchHHHHHHhcCCcce-EEEEEEeee-CCCCCCcceeee
Q psy4080 253 VDFSVTQRAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIAT-VVGVGAVTM-TEMSGNGRISPL 330 (403)
Q Consensus 253 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~-v~~v~~~~~-~~~~~~~g~~fv 330 (403)
|..+ ..+..|||||||++-+.++ |.+.+.++++ |+.|.+... .+..+++|||||
T Consensus 158 vc~S---------------------van~RLFiG~IPK~k~kee---Ilee~~kVteGVvdVivy~~p~dk~KNRGFaFv 213 (506)
T KOG0117|consen 158 VCVS---------------------VANCRLFIGNIPKTKKKEE---ILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFV 213 (506)
T ss_pred EEEe---------------------eecceeEeccCCccccHHH---HHHHHHhhCCCeeEEEEecCccccccccceEEE
Confidence 9876 3467899999999865554 5555555533 344444433 257788999999
Q ss_pred eecc
Q psy4080 331 QFSG 334 (403)
Q Consensus 331 ~f~~ 334 (403)
+|..
T Consensus 214 eYe~ 217 (506)
T KOG0117|consen 214 EYES 217 (506)
T ss_pred Eeec
Confidence 9964
No 18
>KOG0127|consensus
Probab=99.82 E-value=1.4e-19 Score=176.84 Aligned_cols=192 Identities=19% Similarity=0.250 Sum_probs=139.7
Q ss_pred CCCCCceeeeechhhHHHHHHHHHhHh-----------------h-h--------hC---C-----CCCCCCCCEEEEcC
Q psy4080 141 SYGGRGKIIIAVVTEVEEEAEATAMVE-----------------E-F--------AD---G-----RENPQPSRCLGVFG 186 (403)
Q Consensus 141 ~~~g~g~~~~~~~~~~~~~~~~~~~~~-----------------~-~--------~~---~-----~~~~~~~~~l~V~n 186 (403)
..+|||||.|+..++...+........ + . .. . .....+-..|+|.|
T Consensus 45 ~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRN 124 (678)
T KOG0127|consen 45 EKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRN 124 (678)
T ss_pred cccCccceeeehHhHHHHHHHHhhcCcccceecccccccccccchhcccccchhhhcccccCCcchhhccCccceEEeec
Confidence 467899999999998888776654200 0 0 00 0 00112257899999
Q ss_pred CCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccCCCCCCCCC
Q psy4080 187 LSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVTQRAHTPTP 266 (403)
Q Consensus 187 Lp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~~~~~~~~~~ 266 (403)
||+.+.+.+|+.+|+.||.|..|.|++.+.++ -.|||||+|....+|.+||+.||+..|+|++|.|.||.++.......
T Consensus 125 LPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgk-lcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta 203 (678)
T KOG0127|consen 125 LPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGK-LCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTA 203 (678)
T ss_pred CCcccCcHHHHHHHhhcceEEEEEcccCCCCC-ccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccc
Confidence 99999999999999999999999999765544 44999999999999999999999999999999999988653211100
Q ss_pred ------------------------------------------C------------------cCCC-------------C-
Q psy4080 267 ------------------------------------------G------------------IYMG-------------R- 272 (403)
Q Consensus 267 ------------------------------------------~------------------~~~~-------------~- 272 (403)
. .... .
T Consensus 204 ~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k 283 (678)
T KOG0127|consen 204 HEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNK 283 (678)
T ss_pred hhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcccchhccc
Confidence 0 0000 0
Q ss_pred -CCcccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecccc
Q psy4080 273 -PTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSGGM 336 (403)
Q Consensus 273 -~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~a~ 336 (403)
.........++||.||+..++++. |.++|..||.|..+.+|.+..|+.++|-|||.|....
T Consensus 284 ~~~en~~~~~tVFvRNL~fD~tEEe---l~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~ 345 (678)
T KOG0127|consen 284 TTRENITEGKTVFVRNLPFDTTEEE---LKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQI 345 (678)
T ss_pred cccccccccceEEEecCCccccHHH---HHHHHHhhccceeEEEEeccCCCCcccceEEEeccHH
Confidence 000011126899999988876666 4555555556677889999999999999999997543
No 19
>KOG0131|consensus
Probab=99.81 E-value=6e-20 Score=156.93 Aligned_cols=141 Identities=18% Similarity=0.224 Sum_probs=116.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy4080 177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFS 256 (403)
Q Consensus 177 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a 256 (403)
....|||||||+..++++.|.++|-+.|+|+++.|.+|+.+...+|||||+|.++|+|+-|++-||...|-|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 45689999999999999999999999999999999999999999999999999999999999999988899999999988
Q ss_pred cCCCCCCCCCCcCCCCCCcccCCCceeeeCCCCCccccchHHHHHHhcCCcceEE-EEEEeeeCCCCCCcceeeeeecc
Q psy4080 257 VTQRAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVV-GVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~-~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
..... .......+||+||...+++.-+-++|..|| .|. .-.+..+.+++.+++|+|+.|+.
T Consensus 87 s~~~~--------------nl~vganlfvgNLd~~vDe~~L~dtFsafG---~l~~~P~i~rd~~tg~~~~~g~i~~~s 148 (203)
T KOG0131|consen 87 SAHQK--------------NLDVGANLFVGNLDPEVDEKLLYDTFSAFG---VLISPPKIMRDPDTGNPKGFGFINYAS 148 (203)
T ss_pred ccccc--------------cccccccccccccCcchhHHHHHHHHHhcc---ccccCCcccccccCCCCCCCeEEechh
Confidence 52221 112236799999988655555444444444 443 23567788999999999999963
No 20
>KOG0124|consensus
Probab=99.81 E-value=1.8e-20 Score=175.04 Aligned_cols=150 Identities=21% Similarity=0.303 Sum_probs=125.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy4080 178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSV 257 (403)
Q Consensus 178 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~ 257 (403)
-.|.||||.|.+.+.|+.|+..|..||+|++|.+..|+.|+++||||||+|+-+|.|+.|++.|||..++|+.|+|....
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999997432
Q ss_pred CCCCCCCCCCcCCCCCCcccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 258 TQRAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
+.+.....+.....+...-..+||..++....+.|++.+|+.||+| +.|.+........++||+|++|+.
T Consensus 192 ----NmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I---~~C~LAr~pt~~~HkGyGfiEy~n 261 (544)
T KOG0124|consen 192 ----NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEI---VKCQLARAPTGRGHKGYGFIEYNN 261 (544)
T ss_pred ----CCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcce---eeEEeeccCCCCCccceeeEEecc
Confidence 1122111111222233345789999999999999999999988855 566677777889999999999974
No 21
>KOG0117|consensus
Probab=99.80 E-value=4.8e-19 Score=169.71 Aligned_cols=173 Identities=18% Similarity=0.178 Sum_probs=133.4
Q ss_pred CCCCCCceeeeechhhHHHHHHHHHhHhhhh---CCCCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCC-eEEEEEEeeC
Q psy4080 140 DSYGGRGKIIIAVVTEVEEEAEATAMVEEFA---DGRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGP-VERVEVVIDA 215 (403)
Q Consensus 140 ~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~-i~~v~i~~d~ 215 (403)
...+||.||.|...+++..+....+...-.. ........++.|||||||.+.++++|.+.|++.++ |++|.|...+
T Consensus 122 G~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p 201 (506)
T KOG0117|consen 122 GDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSP 201 (506)
T ss_pred CCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCc
Confidence 4567899999999998888887665432111 11123456899999999999999999999999986 7788877665
Q ss_pred C-CCCcceEEEEEecCHHHHHHHHHHh-CC-ceeCCeEEEEEeccCCCCCCCCCCcCCCCCCcccCCCceeeeCCCCCcc
Q psy4080 216 K-TGRSRGFCFVYFESRDDAAAAKDAC-TG-MEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEK 292 (403)
Q Consensus 216 ~-tg~~rG~afV~f~~~~~a~~Al~~l-~g-~~l~g~~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~l~~~~ 292 (403)
. +.+++|||||+|.+...|..|-..| ++ ..|.|+.|.|.||.++...... ....-..|||.||+.++
T Consensus 202 ~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded----------~ms~VKvLYVRNL~~~t 271 (506)
T KOG0117|consen 202 DDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDED----------TMSKVKVLYVRNLMEST 271 (506)
T ss_pred cccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChh----------hhhheeeeeeeccchhh
Confidence 4 5679999999999999999998766 33 3489999999999876643221 11233569999999999
Q ss_pred ccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeec
Q psy4080 293 HAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFS 333 (403)
Q Consensus 293 ~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~ 333 (403)
|++.|+++|+.||.+..|+ .+ +-||||.|+
T Consensus 272 TeE~lk~~F~~~G~veRVk---k~--------rDYaFVHf~ 301 (506)
T KOG0117|consen 272 TEETLKKLFNEFGKVERVK---KP--------RDYAFVHFA 301 (506)
T ss_pred hHHHHHHHHHhccceEEee---cc--------cceeEEeec
Confidence 9999999999997666555 33 348999996
No 22
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.78 E-value=2.4e-18 Score=147.73 Aligned_cols=85 Identities=36% Similarity=0.536 Sum_probs=80.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy4080 177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFS 256 (403)
Q Consensus 177 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a 256 (403)
..+++|||+|||+++||++|+++|++||.|.+|.|+.|+.|++++|||||+|.+.++|++||+.||+..|+|+.|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy4080 257 VTQRA 261 (403)
Q Consensus 257 ~~~~~ 261 (403)
..+..
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 76544
No 23
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.77 E-value=7.8e-18 Score=172.67 Aligned_cols=151 Identities=19% Similarity=0.203 Sum_probs=113.3
Q ss_pred CCCCCEEEEcCCCC-CCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 176 PQPSRCLGVFGLSI-YTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 176 ~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
..++++|||+|||+ .+|+++|+++|+.||.|..|+|+.++ +|||||+|.+.++|..||+.|||..|.|++|.|.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 34678999999998 69999999999999999999998863 5899999999999999999999999999999999
Q ss_pred eccCCCCCCCCC----------CcCCCC-------CC-----cccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEE
Q psy4080 255 FSVTQRAHTPTP----------GIYMGR-------PT-----YEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVG 312 (403)
Q Consensus 255 ~a~~~~~~~~~~----------~~~~~~-------~~-----~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~ 312 (403)
+++.+....+.. ..+... .. .......+|+|+||+..++++++++||+.||.+ .|+.
T Consensus 347 ~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~-~i~~ 425 (481)
T TIGR01649 347 PSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVH-KVKK 425 (481)
T ss_pred EcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCc-cceE
Confidence 986543221110 001000 00 001234689999999999988888888887752 1444
Q ss_pred EEEeeeCCCCCCcceeeeeecc
Q psy4080 313 VGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 313 v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
|.+.. .....+++|||+|+.
T Consensus 426 ik~~~--~~~~~~~~gfVeF~~ 445 (481)
T TIGR01649 426 FKFFP--KDNERSKMGLLEWES 445 (481)
T ss_pred EEEec--CCCCcceeEEEEcCC
Confidence 55543 223357899999975
No 24
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.76 E-value=5.7e-18 Score=173.82 Aligned_cols=175 Identities=21% Similarity=0.135 Sum_probs=126.6
Q ss_pred CCCCCceeeeechhhHHHHHHHHHhHhhh---hCCCCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCC-eEEEEEE-eeC
Q psy4080 141 SYGGRGKIIIAVVTEVEEEAEATAMVEEF---ADGRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGP-VERVEVV-IDA 215 (403)
Q Consensus 141 ~~~g~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~-i~~v~i~-~d~ 215 (403)
...||+||.|...++++.+.+......-. ..........++|||+|||.++|+++|.++|.+++. ++++.+. ...
T Consensus 97 ~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~ 176 (578)
T TIGR01648 97 QNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAA 176 (578)
T ss_pred CccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEecccc
Confidence 35689999999999999988765421110 111122345789999999999999999999999864 4444433 233
Q ss_pred CCCCcceEEEEEecCHHHHHHHHHHhCC--ceeCCeEEEEEeccCCCCCCCCCCcCCCCCCcccCCCceeeeCCCCCccc
Q psy4080 216 KTGRSRGFCFVYFESRDDAAAAKDACTG--MEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEKH 293 (403)
Q Consensus 216 ~tg~~rG~afV~f~~~~~a~~Al~~l~g--~~l~g~~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~l~~~~~ 293 (403)
.+++++|||||+|.+.++|..|++.|+. ..+.|+.|.|.|+.+...... .......+|||+||+..++
T Consensus 177 ~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~----------~~~~~~k~LfVgNL~~~~t 246 (578)
T TIGR01648 177 DKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDE----------DVMAKVKILYVRNLMTTTT 246 (578)
T ss_pred ccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccccccc----------cccccccEEEEeCCCCCCC
Confidence 4578899999999999999999988864 458999999999976543211 1112346799999999988
Q ss_pred cchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 294 AIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 294 ~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
+++|+++|+.|. .|.|+.|.++ ++|+||+|+.
T Consensus 247 ee~L~~~F~~f~-~G~I~rV~~~--------rgfAFVeF~s 278 (578)
T TIGR01648 247 EEIIEKSFSEFK-PGKVERVKKI--------RDYAFVHFED 278 (578)
T ss_pred HHHHHHHHHhcC-CCceEEEEee--------cCeEEEEeCC
Confidence 888888877771 1344455444 3589999964
No 25
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.76 E-value=8.5e-18 Score=172.38 Aligned_cols=141 Identities=15% Similarity=0.135 Sum_probs=105.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHh--CCceeCCeEEEEEe
Q psy4080 178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC--TGMEIDGRQIRVDF 255 (403)
Q Consensus 178 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l--~g~~l~g~~i~V~~ 255 (403)
++++|||+|||+++||++|+++|++||.|.+|.|+.+ +|||||+|.+.++|++||+.| ++..|.|++|.|.|
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 4689999999999999999999999999999999854 469999999999999999864 78899999999999
Q ss_pred ccCCCCCCCCCCcCCCCCCcccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 256 SVTQRAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 256 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
+..+.......... ..........|+|+||+..+++.+|.++|+ .+|.|+.|.+.++.. .++|||+|..
T Consensus 75 s~~~~~~~~~~~~~---~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~---~~G~V~~v~i~~~~~----~~~afVef~~ 143 (481)
T TIGR01649 75 STSQEIKRDGNSDF---DSAGPNKVLRVIVENPMYPITLDVLYQIFN---PYGKVLRIVTFTKNN----VFQALVEFES 143 (481)
T ss_pred cCCcccccCCCCcc---cCCCCCceEEEEEcCCCCCCCHHHHHHHHh---ccCCEEEEEEEecCC----ceEEEEEECC
Confidence 97654322211000 001112235789999988766666555555 555666666665432 3679999975
No 26
>KOG0127|consensus
Probab=99.74 E-value=1.5e-17 Score=162.74 Aligned_cols=151 Identities=21% Similarity=0.223 Sum_probs=121.7
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q psy4080 179 SRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVT 258 (403)
Q Consensus 179 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~~ 258 (403)
+.||||++||+.++.++|.++|+.+|+|..+.++.++.++.++||+||+|.-.++++.|++.+++..+.|+.|.|..|..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCC-CC-------CcCCC-CCCcc--cCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcce
Q psy4080 259 QRAHTP-TP-------GIYMG-RPTYE--QLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRI 327 (403)
Q Consensus 259 ~~~~~~-~~-------~~~~~-~~~~~--~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~ 327 (403)
+..... .. ..... .+... ....-.+.|.|||+.+...+|+.+|. .||.|+.|.|++..+++.+ ||
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs---~~G~V~Ei~IP~k~dgklc-GF 160 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFS---NFGKVVEIVIPRKKDGKLC-GF 160 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHh---hcceEEEEEcccCCCCCcc-ce
Confidence 654331 10 01011 11111 22356789999999988887665555 5556677778988777777 99
Q ss_pred eeeeec
Q psy4080 328 SPLQFS 333 (403)
Q Consensus 328 ~fv~f~ 333 (403)
|||+|.
T Consensus 161 aFV~fk 166 (678)
T KOG0127|consen 161 AFVQFK 166 (678)
T ss_pred EEEEEe
Confidence 999995
No 27
>KOG4205|consensus
Probab=99.73 E-value=2.2e-17 Score=157.06 Aligned_cols=144 Identities=28% Similarity=0.364 Sum_probs=124.8
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy4080 178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSV 257 (403)
Q Consensus 178 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~ 257 (403)
..++||||+|+++++++.|+++|.+||+|.+|.+++|+.++.++||+||+|++++.+.++|.. ..+.|+|+.|.+..|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 578999999999999999999999999999999999999999999999999999999999943 6788999999999987
Q ss_pred CCCCCCCCCCcCCCCCCcccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 258 TQRAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
+......... .....++|||+|+..+++.++++.|+.|| .|..+.++.|.++...++|+||+|..
T Consensus 84 ~r~~~~~~~~---------~~~tkkiFvGG~~~~~~e~~~r~yfe~~g---~v~~~~~~~d~~~~~~rgFgfv~~~~ 148 (311)
T KOG4205|consen 84 SREDQTKVGR---------HLRTKKIFVGGLPPDTTEEDFKDYFEQFG---KVADVVIMYDKTTSRPRGFGFVTFDS 148 (311)
T ss_pred Cccccccccc---------ccceeEEEecCcCCCCchHHHhhhhhccc---eeEeeEEeecccccccccceeeEecc
Confidence 7654332211 12467899999999999999888888887 55566788899999999999999964
No 28
>KOG0147|consensus
Probab=99.71 E-value=1e-16 Score=157.80 Aligned_cols=81 Identities=37% Similarity=0.613 Sum_probs=75.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy4080 177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFS 256 (403)
Q Consensus 177 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a 256 (403)
.+...||||||.+++||++|+.+|+.||.|..|.+.+|..||.++||+||+|.+.++|.+|++.|||.+|-|+.|+|...
T Consensus 276 ~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v 355 (549)
T KOG0147|consen 276 GPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVV 355 (549)
T ss_pred cchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEe
Confidence 34445999999999999999999999999999999999889999999999999999999999999999999999998764
Q ss_pred c
Q psy4080 257 V 257 (403)
Q Consensus 257 ~ 257 (403)
.
T Consensus 356 ~ 356 (549)
T KOG0147|consen 356 T 356 (549)
T ss_pred e
Confidence 3
No 29
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.70 E-value=1.2e-16 Score=156.22 Aligned_cols=119 Identities=22% Similarity=0.318 Sum_probs=98.5
Q ss_pred CCCCceeeeechhhHHHHHHHHHhHh--------hhhCCCCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEe
Q psy4080 142 YGGRGKIIIAVVTEVEEEAEATAMVE--------EFADGRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVI 213 (403)
Q Consensus 142 ~~g~g~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~ 213 (403)
..+|+||.|...++++.+++...-.. ............++|||+|||+++||++|+++|++||+|+.|.|+.
T Consensus 148 srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~ 227 (346)
T TIGR01659 148 SFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILR 227 (346)
T ss_pred cCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecccccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEee
Confidence 45899999999999988887543111 0011111233467899999999999999999999999999999999
Q ss_pred eCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC--eEEEEEeccCCC
Q psy4080 214 DAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDG--RQIRVDFSVTQR 260 (403)
Q Consensus 214 d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g--~~i~V~~a~~~~ 260 (403)
++.|++++|||||+|.+.++|++||+.||+..+.+ ++|.|.++....
T Consensus 228 d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 228 DKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred cCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCccc
Confidence 99999999999999999999999999999999876 789999987543
No 30
>KOG0109|consensus
Probab=99.70 E-value=3.1e-17 Score=149.63 Aligned_cols=120 Identities=23% Similarity=0.302 Sum_probs=102.4
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q psy4080 180 RCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVTQ 259 (403)
Q Consensus 180 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~~~ 259 (403)
-+|||||||..+++.+|+.+|++||+|++|.|+++ ||||..++...|+-||..|++..|+|..|.|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999987 9999999999999999999999999999999987654
Q ss_pred CCCCCCCCcCCCCCCcccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeeccc
Q psy4080 260 RAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSGG 335 (403)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~a 335 (403)
. ...++++||||...++..+++..|+.+|. |..+.|++ +++||.|..+
T Consensus 75 s-----------------k~stkl~vgNis~tctn~ElRa~fe~ygp---viecdivk--------dy~fvh~d~~ 122 (346)
T KOG0109|consen 75 S-----------------KASTKLHVGNISPTCTNQELRAKFEKYGP---VIECDIVK--------DYAFVHFDRA 122 (346)
T ss_pred C-----------------CCccccccCCCCccccCHHHhhhhcccCC---ceeeeeec--------ceeEEEEeec
Confidence 2 23467999999999888887766666654 45566664 4789998654
No 31
>KOG0123|consensus
Probab=99.68 E-value=1.7e-16 Score=155.98 Aligned_cols=125 Identities=25% Similarity=0.265 Sum_probs=107.8
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q psy4080 180 RCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVTQ 259 (403)
Q Consensus 180 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~~~ 259 (403)
..|||| +++||..|.++|+.+|+|++|+|++|. | +-|||||.|.++++|++||++||...|.|++|+|.|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 368999 899999999999999999999999997 6 9999999999999999999999999999999999998543
Q ss_pred CCCCCCCCcCCCCCCcccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecccc
Q psy4080 260 RAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSGGM 336 (403)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~a~ 336 (403)
.. .+||.||+..++. +.|++.|+.||+|++|.+.++.+. ++|+ ||+|+.+.
T Consensus 76 ~~--------------------~~~i~nl~~~~~~---~~~~d~f~~~g~ilS~kv~~~~~g--~kg~-FV~f~~e~ 126 (369)
T KOG0123|consen 76 PS--------------------LVFIKNLDESIDN---KSLYDTFSEFGNILSCKVATDENG--SKGY-FVQFESEE 126 (369)
T ss_pred Cc--------------------eeeecCCCcccCc---HHHHHHHHhhcCeeEEEEEEcCCC--ceee-EEEeCCHH
Confidence 22 1999999888554 457777777778999999987444 9999 99997643
No 32
>KOG0110|consensus
Probab=99.67 E-value=3.2e-16 Score=158.18 Aligned_cols=148 Identities=22% Similarity=0.266 Sum_probs=119.1
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCC---CcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy4080 180 RCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTG---RSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFS 256 (403)
Q Consensus 180 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg---~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a 256 (403)
++|||.||++++|.++|..+|..+|.|.+|.|...+... -+.|||||+|.++++|+.|++.|+|+.|+|+.|.|.++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 339999999999999999999999999999987754321 25599999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCcCCCCCCcccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecccc
Q psy4080 257 VTQRAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSGGM 336 (403)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~a~ 336 (403)
..++.. ..+.........++|.|.|||+. .+.+++.++|+.||.|+.|++++-.....++||+||+|-.+.
T Consensus 596 ~~k~~~------~~gK~~~~kk~~tKIlVRNipFe---At~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ 666 (725)
T KOG0110|consen 596 ENKPAS------TVGKKKSKKKKGTKILVRNIPFE---ATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPR 666 (725)
T ss_pred cCcccc------ccccccccccccceeeeeccchH---HHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcH
Confidence 722211 11211122223578999999765 777888888889999999999987667777999999997643
No 33
>KOG0123|consensus
Probab=99.67 E-value=6.2e-16 Score=151.99 Aligned_cols=179 Identities=16% Similarity=0.236 Sum_probs=134.0
Q ss_pred CCCCceeeeechhhHHHHHHHHHhHhhhhC---CCCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCC
Q psy4080 142 YGGRGKIIIAVVTEVEEEAEATAMVEEFAD---GRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTG 218 (403)
Q Consensus 142 ~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg 218 (403)
.=|+|++.|.++.+++.+++..+...-... ..........|||.||+++++..+|.++|+.||+|++|++..+. .|
T Consensus 36 slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g 114 (369)
T KOG0123|consen 36 SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG 114 (369)
T ss_pred ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC
Confidence 457899999999999999987653211110 00111222339999999999999999999999999999999984 45
Q ss_pred CcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccCCCCCCCCCCcCCCCCCcccCCCceeeeCCCCCccccchHH
Q psy4080 219 RSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEKHAIKGG 298 (403)
Q Consensus 219 ~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~l~~~~~~~~~~ 298 (403)
++|| ||+|.++++|.+||+.|||..+.|+.|.|.....+......... ....-+.+++.++....++.
T Consensus 115 -~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~-------~~~~~t~v~vk~~~~~~~~~--- 182 (369)
T KOG0123|consen 115 -SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGE-------YKKRFTNVYVKNLEEDSTDE--- 182 (369)
T ss_pred -ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccc-------hhhhhhhhheeccccccchH---
Confidence 9999 99999999999999999999999999999887665543322111 11123456777776554444
Q ss_pred HHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 299 KFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 299 ~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.|-+.|..++.|+.+.++.+ ..+.+++++||+|+.
T Consensus 183 ~l~~~f~~~g~i~s~~v~~~-~~g~~~~~gfv~f~~ 217 (369)
T KOG0123|consen 183 ELKDLFSAYGSITSVAVMRD-SIGKSKGFGFVNFEN 217 (369)
T ss_pred HHHHhhcccCcceEEEEeec-CCCCCCCccceeecC
Confidence 46666677778888889987 445599999999954
No 34
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.66 E-value=9e-16 Score=114.66 Aligned_cols=70 Identities=39% Similarity=0.683 Sum_probs=67.5
Q ss_pred EEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q psy4080 182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIR 252 (403)
Q Consensus 182 l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~ 252 (403)
|||+|||.++|+++|+++|++||.|..+.+..+ .++..+|||||+|.+.++|++|++.|+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 7899999999999999999999999999999999885
No 35
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.64 E-value=1.7e-15 Score=156.00 Aligned_cols=121 Identities=14% Similarity=0.185 Sum_probs=100.7
Q ss_pred CCCCceeeeechhhHHHHHHHHHhHh--------hhh-C----------CCCCCCCCCEEEEcCCCCCCcHHHHHHHhhc
Q psy4080 142 YGGRGKIIIAVVTEVEEEAEATAMVE--------EFA-D----------GRENPQPSRCLGVFGLSIYTTEQQINHIFSK 202 (403)
Q Consensus 142 ~~g~g~~~~~~~~~~~~~~~~~~~~~--------~~~-~----------~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~ 202 (403)
..||+|+.|...+.++.+.....-.. ... . ........++|||+|||+++++++|+++|+.
T Consensus 148 skGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~ 227 (612)
T TIGR01645 148 HKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEA 227 (612)
T ss_pred cCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhh
Confidence 56899999999999999886542100 000 0 0011223579999999999999999999999
Q ss_pred CCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccCCCCC
Q psy4080 203 YGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVTQRAH 262 (403)
Q Consensus 203 ~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~~~~~~ 262 (403)
||.|++|.|+.++.++.++|||||+|.+.++|.+||+.||+..|+|+.|+|.++...+..
T Consensus 228 FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP~~ 287 (612)
T TIGR01645 228 FGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDA 287 (612)
T ss_pred cCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCccc
Confidence 999999999999999999999999999999999999999999999999999999875543
No 36
>KOG0121|consensus
Probab=99.64 E-value=3.5e-16 Score=126.43 Aligned_cols=81 Identities=41% Similarity=0.605 Sum_probs=77.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy4080 177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFS 256 (403)
Q Consensus 177 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a 256 (403)
..++|||||||++.+||++|.++|+++|+|..|.|-.|+.+..+.|||||+|.+.++|+.||+.++|+.|+.++|.|.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred c
Q psy4080 257 V 257 (403)
Q Consensus 257 ~ 257 (403)
.
T Consensus 114 ~ 114 (153)
T KOG0121|consen 114 A 114 (153)
T ss_pred c
Confidence 3
No 37
>KOG0149|consensus
Probab=99.62 E-value=6.4e-16 Score=137.61 Aligned_cols=79 Identities=28% Similarity=0.441 Sum_probs=73.8
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q psy4080 179 SRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVT 258 (403)
Q Consensus 179 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~~ 258 (403)
-++||||+|+|.++.+.|+++|++||+|+++.|+.|+.||++|||+||+|.+.+.|.+|++. ..-.|+|++..+++|.-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhhh
Confidence 47899999999999999999999999999999999999999999999999999999999965 56679999999988764
No 38
>KOG0113|consensus
Probab=99.61 E-value=5.7e-15 Score=135.42 Aligned_cols=100 Identities=33% Similarity=0.523 Sum_probs=88.1
Q ss_pred CCCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q psy4080 172 GRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQI 251 (403)
Q Consensus 172 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i 251 (403)
......+-+||||+-|+.+++|..|+..|+.||+|+.|.||.|+.||+++|||||+|.++.+..+|.+..+|..|+|+.|
T Consensus 94 p~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri 173 (335)
T KOG0113|consen 94 PNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRI 173 (335)
T ss_pred CcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEE
Confidence 34445778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCCCCCCCCCcCCC
Q psy4080 252 RVDFSVTQRAHTPTPGIYMG 271 (403)
Q Consensus 252 ~V~~a~~~~~~~~~~~~~~~ 271 (403)
.|.+-..+....-.+....|
T Consensus 174 ~VDvERgRTvkgW~PRRLGG 193 (335)
T KOG0113|consen 174 LVDVERGRTVKGWLPRRLGG 193 (335)
T ss_pred EEEecccccccccccccccC
Confidence 99987766555444443333
No 39
>KOG0122|consensus
Probab=99.60 E-value=4.1e-15 Score=132.96 Aligned_cols=82 Identities=38% Similarity=0.570 Sum_probs=79.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy4080 178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSV 257 (403)
Q Consensus 178 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~ 257 (403)
..++|-|.||+.+++|++|.++|.+||.|..|.|.+|+.||.+||||||+|.+.++|.+||+.|||.-++.--|.|+|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CC
Q psy4080 258 TQ 259 (403)
Q Consensus 258 ~~ 259 (403)
++
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 64
No 40
>KOG0132|consensus
Probab=99.58 E-value=1.3e-14 Score=147.43 Aligned_cols=81 Identities=23% Similarity=0.443 Sum_probs=73.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy4080 176 PQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDF 255 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~ 255 (403)
..-++|||||+|+.+++|.+|.++|+.||+|.+|.++.. +|||||++....+|++||.+|+...+.++.|+|.|
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~W 491 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAW 491 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEee
Confidence 345799999999999999999999999999999988764 56999999999999999999999999999999999
Q ss_pred ccCCCCC
Q psy4080 256 SVTQRAH 262 (403)
Q Consensus 256 a~~~~~~ 262 (403)
|..+...
T Consensus 492 a~g~G~k 498 (894)
T KOG0132|consen 492 AVGKGPK 498 (894)
T ss_pred eccCCcc
Confidence 9776543
No 41
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.57 E-value=2.1e-14 Score=107.72 Aligned_cols=70 Identities=43% Similarity=0.756 Sum_probs=64.9
Q ss_pred EEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q psy4080 182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIR 252 (403)
Q Consensus 182 l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~ 252 (403)
|||+|||+++++++|.++|+.||.|..+.+..++. +.++|+|||+|.++++|.+|++.+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999866 89999999999999999999999999999999874
No 42
>KOG0107|consensus
Probab=99.56 E-value=7.8e-15 Score=124.99 Aligned_cols=79 Identities=34% Similarity=0.476 Sum_probs=73.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy4080 178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSV 257 (403)
Q Consensus 178 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~ 257 (403)
-.++||||||+..+++.+|..+|..||+|.+|+|... +.|||||||+++.+|+.|+..|+|..|.|..|+|+++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 3689999999999999999999999999999999875 35799999999999999999999999999999999987
Q ss_pred CCCC
Q psy4080 258 TQRA 261 (403)
Q Consensus 258 ~~~~ 261 (403)
....
T Consensus 84 G~~r 87 (195)
T KOG0107|consen 84 GRPR 87 (195)
T ss_pred CCcc
Confidence 6654
No 43
>KOG4206|consensus
Probab=99.56 E-value=3.9e-14 Score=126.00 Aligned_cols=147 Identities=20% Similarity=0.296 Sum_probs=116.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHH----HhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy4080 178 PSRCLGVFGLSIYTTEQQINH----IFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRV 253 (403)
Q Consensus 178 ~~~~l~V~nLp~~~te~~L~~----~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V 253 (403)
+..||||.||+..+..++|+. +|++||.|.+|... .|.+.+|-|||.|.+.+.|..|+.+|+|..+-|++++|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 445999999999999988887 99999999999874 57789999999999999999999999999999999999
Q ss_pred EeccCCCCCCCCCC---------------------------------cCCCCC--CcccCCCceeeeCCCCCccccchHH
Q psy4080 254 DFSVTQRAHTPTPG---------------------------------IYMGRP--TYEQLNNTQSELGSLLSEKHAIKGG 298 (403)
Q Consensus 254 ~~a~~~~~~~~~~~---------------------------------~~~~~~--~~~~~~~~~~~vg~l~~~~~~~~~~ 298 (403)
.||........... ...+.+ ......+..+++.|||...+.+.+.
T Consensus 85 qyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~ 164 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLS 164 (221)
T ss_pred ecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHH
Confidence 99987643221100 000000 1123455788999999999999999
Q ss_pred HHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeeccc
Q psy4080 299 KFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSGG 335 (403)
Q Consensus 299 ~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~a 335 (403)
.+|+.|..+.+|.-+.. ..+++||+|...
T Consensus 165 ~lf~qf~g~keir~i~~--------~~~iAfve~~~d 193 (221)
T KOG4206|consen 165 DLFEQFPGFKEIRLIPP--------RSGIAFVEFLSD 193 (221)
T ss_pred HHHhhCcccceeEeccC--------CCceeEEecchh
Confidence 99999998887764332 357899999754
No 44
>KOG4207|consensus
Probab=99.55 E-value=6.9e-15 Score=128.26 Aligned_cols=87 Identities=36% Similarity=0.535 Sum_probs=80.8
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
......+|-|-||.+.+|.++|+.+|++||.|.+|.|..|+.|+.++|||||-|....+|+.||++|+|.+|+|+.|.|+
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 33456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCC
Q psy4080 255 FSVTQRA 261 (403)
Q Consensus 255 ~a~~~~~ 261 (403)
+|.--..
T Consensus 89 ~arygr~ 95 (256)
T KOG4207|consen 89 MARYGRP 95 (256)
T ss_pred hhhcCCC
Confidence 9875443
No 45
>KOG0126|consensus
Probab=99.53 E-value=1.7e-15 Score=129.54 Aligned_cols=84 Identities=35% Similarity=0.571 Sum_probs=78.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy4080 177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFS 256 (403)
Q Consensus 177 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a 256 (403)
..+.-|||||||+++||.+|..+|++||+|++|.+++|+.||+++||||+.|++..+...|+..|||..|.|+.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cCCC
Q psy4080 257 VTQR 260 (403)
Q Consensus 257 ~~~~ 260 (403)
....
T Consensus 113 ~~Yk 116 (219)
T KOG0126|consen 113 SNYK 116 (219)
T ss_pred cccc
Confidence 4433
No 46
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.53 E-value=1.2e-13 Score=129.52 Aligned_cols=148 Identities=26% Similarity=0.324 Sum_probs=105.9
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q psy4080 179 SRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVT 258 (403)
Q Consensus 179 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~~ 258 (403)
.++|||+|||..+|+++|.++|..||.|..|.|..++.++.++|||||+|.+.++|..|++.|++..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 69999999999999999999999999999999999988999999999999999999999999999999999999999653
Q ss_pred --CCCCCCCC-------CcCCCCCCcccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceee
Q psy4080 259 --QRAHTPTP-------GIYMGRPTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISP 329 (403)
Q Consensus 259 --~~~~~~~~-------~~~~~~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~f 329 (403)
........ ................+++.+++.......+..+ |..++.+..+.+...........+.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADL---FKSRGDIVRASLPPSKDGKIPKSRSF 271 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHh---ccccccceeeeccCCCCCcccccccc
Confidence 11111110 0001111222334466778888777665554444 55555554444444333333333333
No 47
>KOG0148|consensus
Probab=99.53 E-value=7.4e-14 Score=126.52 Aligned_cols=112 Identities=22% Similarity=0.320 Sum_probs=93.8
Q ss_pred CCCCceeeeechhhHHHHHHHHHhH-------------hhh-----------hCCCCCCCCCCEEEEcCCCCCCcHHHHH
Q psy4080 142 YGGRGKIIIAVVTEVEEEAEATAMV-------------EEF-----------ADGRENPQPSRCLGVFGLSIYTTEQQIN 197 (403)
Q Consensus 142 ~~g~g~~~~~~~~~~~~~~~~~~~~-------------~~~-----------~~~~~~~~~~~~l~V~nLp~~~te~~L~ 197 (403)
..|||||.|...+++|.+.+...-. .+. ..-......+++||||||+..+||++|+
T Consensus 103 sKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr 182 (321)
T KOG0148|consen 103 SKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMR 182 (321)
T ss_pred ccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHH
Confidence 5789999999999999888764310 000 0012344568999999999999999999
Q ss_pred HHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q psy4080 198 HIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVTQ 259 (403)
Q Consensus 198 ~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~~~ 259 (403)
+.|+.||+|.+|+|.+++ |||||.|.+.|.|..||..||+.+|.|+.|++.|-+..
T Consensus 183 ~~Fs~fG~I~EVRvFk~q------GYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 183 QTFSPFGPIQEVRVFKDQ------GYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEG 238 (321)
T ss_pred HhcccCCcceEEEEeccc------ceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccC
Confidence 999999999999999884 69999999999999999999999999999999997543
No 48
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.53 E-value=5e-14 Score=129.68 Aligned_cols=77 Identities=23% Similarity=0.324 Sum_probs=71.2
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q psy4080 179 SRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVT 258 (403)
Q Consensus 179 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~~ 258 (403)
.++|||+|||+.+||++|+++|+.||+|.+|.|+.+.. .+|||||+|.++++|+.|| .|+|..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 57999999999999999999999999999999998854 4689999999999999999 6999999999999999864
Q ss_pred C
Q psy4080 259 Q 259 (403)
Q Consensus 259 ~ 259 (403)
.
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 3
No 49
>KOG0125|consensus
Probab=99.52 E-value=3.3e-14 Score=131.91 Aligned_cols=84 Identities=26% Similarity=0.486 Sum_probs=77.2
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy4080 174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRV 253 (403)
Q Consensus 174 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V 253 (403)
+.+...+.|+|.|||+..-|.||+.+|++||.|.+|.|+.+. .-+||||||+|++.++|++|-++|||..|.|++|.|
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEV 168 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEV 168 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEE
Confidence 345567899999999999999999999999999999999862 458999999999999999999999999999999999
Q ss_pred EeccCC
Q psy4080 254 DFSVTQ 259 (403)
Q Consensus 254 ~~a~~~ 259 (403)
..|..+
T Consensus 169 n~ATar 174 (376)
T KOG0125|consen 169 NNATAR 174 (376)
T ss_pred eccchh
Confidence 998765
No 50
>KOG0130|consensus
Probab=99.52 E-value=2.5e-14 Score=116.68 Aligned_cols=88 Identities=27% Similarity=0.497 Sum_probs=82.1
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy4080 174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRV 253 (403)
Q Consensus 174 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V 253 (403)
.....+..|||.++...+||++|.+.|..||+|+.+.+..|+.||..||||+|+|.+.++|++||++|||..|.|+.|.|
T Consensus 67 qrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~V 146 (170)
T KOG0130|consen 67 QRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSV 146 (170)
T ss_pred ccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeE
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCC
Q psy4080 254 DFSVTQRA 261 (403)
Q Consensus 254 ~~a~~~~~ 261 (403)
.|+..+.+
T Consensus 147 Dw~Fv~gp 154 (170)
T KOG0130|consen 147 DWCFVKGP 154 (170)
T ss_pred EEEEecCC
Confidence 99876543
No 51
>KOG0105|consensus
Probab=99.50 E-value=1.3e-13 Score=118.34 Aligned_cols=127 Identities=24% Similarity=0.303 Sum_probs=97.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy4080 177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFS 256 (403)
Q Consensus 177 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a 256 (403)
...++|||||||.++.|.+|.++|-+||.|..|.|... -..-.||||+|+++.+|+.||..-+|..++|..|+|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 45689999999999999999999999999999998543 234569999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCcCCCC-----------CCcccCCCceeeeCCCCCccccchHHHHHHhcCC
Q psy4080 257 VTQRAHTPTPGIYMGR-----------PTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGE 306 (403)
Q Consensus 257 ~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~ 306 (403)
..-.........+.+. ....--....+.|.+||.+-.+.+|++-+..-|.
T Consensus 81 rggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGd 141 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGD 141 (241)
T ss_pred cCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCC
Confidence 7654322222222111 0111223467889999999888887776665553
No 52
>PLN03213 repressor of silencing 3; Provisional
Probab=99.48 E-value=1.3e-13 Score=133.86 Aligned_cols=78 Identities=24% Similarity=0.364 Sum_probs=72.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCH--HHHHHHHHHhCCceeCCeEEEEE
Q psy4080 177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESR--DDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 177 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~--~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
....+||||||++.+|+++|..+|..||.|..|.|+ +.|| +|||||+|.+. .++.+||..|||..+.|+.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 345789999999999999999999999999999999 4677 99999999987 78999999999999999999999
Q ss_pred eccC
Q psy4080 255 FSVT 258 (403)
Q Consensus 255 ~a~~ 258 (403)
.|++
T Consensus 84 KAKP 87 (759)
T PLN03213 84 KAKE 87 (759)
T ss_pred eccH
Confidence 8875
No 53
>KOG4212|consensus
Probab=99.48 E-value=8e-13 Score=126.76 Aligned_cols=162 Identities=17% Similarity=0.270 Sum_probs=120.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhh-cCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy4080 177 QPSRCLGVFGLSIYTTEQQINHIFS-KYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDF 255 (403)
Q Consensus 177 ~~~~~l~V~nLp~~~te~~L~~~F~-~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~ 255 (403)
...+.+||.|||+++.+.+|+++|. +.|+|+.|.+..| ..|+++|||.|+|+++|.+++|++.||.+.+.|++|.|+.
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 3456799999999999999999996 4799999999999 6799999999999999999999999999999999999986
Q ss_pred ccCCCCC---------------------------------------------C-CCC-----------------CcCCCC
Q psy4080 256 SVTQRAH---------------------------------------------T-PTP-----------------GIYMGR 272 (403)
Q Consensus 256 a~~~~~~---------------------------------------------~-~~~-----------------~~~~~~ 272 (403)
....... . ... ..|...
T Consensus 121 d~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~ 200 (608)
T KOG4212|consen 121 DHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLS 200 (608)
T ss_pred cCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccch
Confidence 4431100 0 000 000000
Q ss_pred C-------CcccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeeccccccCcccc
Q psy4080 273 P-------TYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSGGMENTDPIC 343 (403)
Q Consensus 273 ~-------~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~a~e~~~~~~ 343 (403)
. ........++||+||...+. .++|.+.|+--+.|+.|.|-.+ +.+.+++|+.++|.-++|....|.
T Consensus 201 ~~Flr~~h~f~pPl~~k~fvanl~~~vg---~~kL~qvfgmAGkv~~vdf~id-KeG~s~G~~vi~y~hpveavqaIs 274 (608)
T KOG4212|consen 201 ASFLRSLHIFSPPLHNKVFVANLDYKVG---NKKLKQVFGMAGKVQSVDFSID-KEGNSRGFAVIEYDHPVEAVQAIS 274 (608)
T ss_pred hhhhhhccCCCCCccceeeeeccccccc---hHHHHHHhccceeeeeeceeec-cccccCCeeEEEecchHHHHHHHH
Confidence 0 01122346788888877655 4556666777778888888877 445888999999987776554333
No 54
>KOG0111|consensus
Probab=99.47 E-value=4.3e-14 Score=124.37 Aligned_cols=87 Identities=33% Similarity=0.521 Sum_probs=82.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy4080 177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFS 256 (403)
Q Consensus 177 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a 256 (403)
...++||||+|..++||.-|...|-+||.|.+|.++.|-.+++++|||||+|...|+|.+||..||+.+|.|+.|+|.+|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q psy4080 257 VTQRAHT 263 (403)
Q Consensus 257 ~~~~~~~ 263 (403)
.+.+...
T Consensus 88 kP~kike 94 (298)
T KOG0111|consen 88 KPEKIKE 94 (298)
T ss_pred CCccccC
Confidence 8876543
No 55
>smart00362 RRM_2 RNA recognition motif.
Probab=99.46 E-value=4.5e-13 Score=99.34 Aligned_cols=72 Identities=43% Similarity=0.725 Sum_probs=67.4
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 181 CLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 181 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
+|||+|||..+++++|+++|.+||+|..+.+..++ +.++|+|||+|.+.++|+.|++.|++..+.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998875 7788999999999999999999999999999998873
No 56
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.45 E-value=4.4e-13 Score=121.57 Aligned_cols=77 Identities=21% Similarity=0.235 Sum_probs=70.6
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy4080 178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSV 257 (403)
Q Consensus 178 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~ 257 (403)
.+.+|||+||++.+||++|+++|+.||+|.+|.|+.|. ..+|||||+|.++++|+.|| .|+|..|.+++|.|..+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 45799999999999999999999999999999999884 44579999999999999999 899999999999998765
Q ss_pred C
Q psy4080 258 T 258 (403)
Q Consensus 258 ~ 258 (403)
.
T Consensus 80 ~ 80 (243)
T PLN03121 80 Q 80 (243)
T ss_pred c
Confidence 4
No 57
>KOG0144|consensus
Probab=99.44 E-value=1.8e-13 Score=131.18 Aligned_cols=120 Identities=32% Similarity=0.404 Sum_probs=98.0
Q ss_pred CCCCceeeeechhhHHHHHHHHHhHhh-----------hhC-CCCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEE
Q psy4080 142 YGGRGKIIIAVVTEVEEEAEATAMVEE-----------FAD-GRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERV 209 (403)
Q Consensus 142 ~~g~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~-~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v 209 (403)
..|.=|+.+...+++.++..+.-.... ..+ ..+.....++||||-|+..+||.+|+++|.+||.|++|
T Consensus 75 s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~ 154 (510)
T KOG0144|consen 75 SKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDC 154 (510)
T ss_pred ccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchh
Confidence 456679999999998888777532111 111 11222346899999999999999999999999999999
Q ss_pred EEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCce-eCC--eEEEEEeccCCCCC
Q psy4080 210 EVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGME-IDG--RQIRVDFSVTQRAH 262 (403)
Q Consensus 210 ~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~-l~g--~~i~V~~a~~~~~~ 262 (403)
.|.+| ..+.+||||||+|.+.|.|..||++|||.. +.| .+|.|+||.+++..
T Consensus 155 ~ilrd-~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk 209 (510)
T KOG0144|consen 155 YILRD-PDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDK 209 (510)
T ss_pred hheec-ccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCc
Confidence 99998 569999999999999999999999999976 665 78999999987654
No 58
>KOG0131|consensus
Probab=99.44 E-value=4e-13 Score=115.34 Aligned_cols=121 Identities=21% Similarity=0.292 Sum_probs=105.5
Q ss_pred CCCCCceeeeechhhHHHHHHHHHhHhhh---------hCCCCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEE-EE
Q psy4080 141 SYGGRGKIIIAVVTEVEEEAEATAMVEEF---------ADGRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVER-VE 210 (403)
Q Consensus 141 ~~~g~g~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~-v~ 210 (403)
.+.||||+.|...++++-+.+..++..-. .........+.+|||+||.+.++|..|.+.|+.||.|.. -+
T Consensus 49 ~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~ 128 (203)
T KOG0131|consen 49 KHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPK 128 (203)
T ss_pred cccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecccccccccccccccccccCcchhHHHHHHHHHhccccccCCc
Confidence 47899999999999999999988764422 223345566789999999999999999999999998765 47
Q ss_pred EEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccCCCC
Q psy4080 211 VVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVTQRA 261 (403)
Q Consensus 211 i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~~~~~ 261 (403)
|+++..||.++|||||.|.+.+.+.+|+..|||+.+..++|.|.++..+..
T Consensus 129 i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 129 IMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDT 179 (203)
T ss_pred ccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCC
Confidence 889999999999999999999999999999999999999999999976543
No 59
>smart00360 RRM RNA recognition motif.
Probab=99.43 E-value=7.6e-13 Score=97.71 Aligned_cols=71 Identities=45% Similarity=0.738 Sum_probs=67.2
Q ss_pred EcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 184 VFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 184 V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
|+|||..+++++|+++|++||.|..+.+..++.++.++|||||+|.+.++|..|++.|++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999988789999999999999999999999999999999998873
No 60
>KOG0114|consensus
Probab=99.42 E-value=1.2e-12 Score=102.27 Aligned_cols=82 Identities=27% Similarity=0.429 Sum_probs=74.1
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy4080 174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRV 253 (403)
Q Consensus 174 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V 253 (403)
-++..++.|||.|||+.+|.++..++|.+||.|..|+|-..+ ..+|-|||.|++..+|.+|++.|+|..+.++.+.|
T Consensus 13 lppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~v 89 (124)
T KOG0114|consen 13 LPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVV 89 (124)
T ss_pred CChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEE
Confidence 345667899999999999999999999999999999996554 45899999999999999999999999999999999
Q ss_pred EeccC
Q psy4080 254 DFSVT 258 (403)
Q Consensus 254 ~~a~~ 258 (403)
-+..+
T Consensus 90 lyyq~ 94 (124)
T KOG0114|consen 90 LYYQP 94 (124)
T ss_pred EecCH
Confidence 98754
No 61
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.37 E-value=4.7e-12 Score=94.31 Aligned_cols=74 Identities=45% Similarity=0.696 Sum_probs=68.8
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy4080 181 CLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDF 255 (403)
Q Consensus 181 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~ 255 (403)
+|+|+|||..+++++|+++|+.||.|..+.+..++.+ ..+|+|||+|.+.++|..|++.+++..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987654 7789999999999999999999999999999999864
No 62
>KOG0108|consensus
Probab=99.36 E-value=1.3e-12 Score=129.70 Aligned_cols=81 Identities=31% Similarity=0.532 Sum_probs=78.5
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q psy4080 180 RCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVTQ 259 (403)
Q Consensus 180 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~~~ 259 (403)
+.|||||||++++|++|..+|+..|.|.+++++.|+.||+++||||++|.+.++|..|++.|||.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred C
Q psy4080 260 R 260 (403)
Q Consensus 260 ~ 260 (403)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 4
No 63
>KOG0120|consensus
Probab=99.35 E-value=3.4e-12 Score=127.56 Aligned_cols=149 Identities=16% Similarity=0.206 Sum_probs=109.3
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcC-----------C-CeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhC
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKY-----------G-PVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACT 242 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~-----------G-~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~ 242 (403)
.......+||+++|+.++++.+..+|..- | .|..+.+...+. |||++|.+.++|..|+ .++
T Consensus 171 ~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~n------fa~ie~~s~~~at~~~-~~~ 243 (500)
T KOG0120|consen 171 ATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEKN------FAFIEFRSISEATEAM-ALD 243 (500)
T ss_pred hhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeeccccc------ceeEEecCCCchhhhh-ccc
Confidence 34457899999999999999999998753 3 367777655543 9999999999999999 779
Q ss_pred CceeCCeEEEEEeccCCCCCCC---CCC---cCCC--CCCcccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEE
Q psy4080 243 GMEIDGRQIRVDFSVTQRAHTP---TPG---IYMG--RPTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVG 314 (403)
Q Consensus 243 g~~l~g~~i~V~~a~~~~~~~~---~~~---~~~~--~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~ 314 (403)
+..+.|.++++........... ... .+.. ...........++|++|+..+++..+.++.+.|| .+..+.
T Consensus 244 ~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg---~lk~f~ 320 (500)
T KOG0120|consen 244 GIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFG---PLKAFR 320 (500)
T ss_pred chhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcc---cchhhe
Confidence 9999999988865433221110 000 0000 1112233457899999999988888777777776 555888
Q ss_pred EeeeCCCCCCcceeeeeec
Q psy4080 315 AVTMTEMSGNGRISPLQFS 333 (403)
Q Consensus 315 ~~~~~~~~~~~g~~fv~f~ 333 (403)
++.+..++.++||+|++|-
T Consensus 321 lv~d~~~g~skg~af~ey~ 339 (500)
T KOG0120|consen 321 LVKDSATGNSKGFAFCEYC 339 (500)
T ss_pred eecccccccccceeeeeee
Confidence 9999999999999999994
No 64
>KOG4211|consensus
Probab=99.34 E-value=1.8e-11 Score=119.60 Aligned_cols=147 Identities=20% Similarity=0.167 Sum_probs=108.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy4080 176 PQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDF 255 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~ 255 (403)
......|-+.+|||++|+++|.+||+.+ .|+++.+. +.+|+..|-|||+|.+.+++++||+. +...+..+-|.|-.
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~--r~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIP--RRNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFT 82 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEe--ccCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEc
Confidence 3445678889999999999999999988 47775554 46899999999999999999999965 88889999999988
Q ss_pred ccCCCCCCCCCCcCCCCCCcccCCCceeeeCCCCCccccchHHHHHHhcCCcceEE-EEEEeeeCCCCCCcceeeeeecc
Q psy4080 256 SVTQRAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVV-GVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 256 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~-~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
+............- .....++..|-+.+||..+++.+ |.+.|..+.-|. .+.++.+ ..+.+.+-|||+|+.
T Consensus 83 ~~~~e~d~~~~~~g----~~s~~~d~vVRLRGLPfscte~d---I~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~s 154 (510)
T KOG4211|consen 83 AGGAEADWVMRPGG----PNSSANDGVVRLRGLPFSCTEED---IVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFES 154 (510)
T ss_pred cCCccccccccCCC----CCCCCCCceEEecCCCccCcHHH---HHHHhcCCcccccceeeecc-CCCCcccceEEEecC
Confidence 86665433322211 11114566788899998877776 555555544333 3555555 555588889999975
No 65
>KOG0146|consensus
Probab=99.34 E-value=4.9e-12 Score=114.47 Aligned_cols=83 Identities=30% Similarity=0.440 Sum_probs=73.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCce-eCC--eEEE
Q psy4080 176 PQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGME-IDG--RQIR 252 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~-l~g--~~i~ 252 (403)
....++||||-|...-.|+|++.+|..||+|.+|.+.+. ..|.+||||||.|.+..+|+.||..|+|.. +-| ..|.
T Consensus 16 g~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg-~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLV 94 (371)
T KOG0146|consen 16 GGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRG-PDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLV 94 (371)
T ss_pred CccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecC-CCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceE
Confidence 345789999999999999999999999999999999987 569999999999999999999999999976 555 5688
Q ss_pred EEeccCC
Q psy4080 253 VDFSVTQ 259 (403)
Q Consensus 253 V~~a~~~ 259 (403)
|+++...
T Consensus 95 VK~ADTd 101 (371)
T KOG0146|consen 95 VKFADTD 101 (371)
T ss_pred EEeccch
Confidence 8887764
No 66
>smart00361 RRM_1 RNA recognition motif.
Probab=99.28 E-value=1.9e-11 Score=91.75 Aligned_cols=61 Identities=30% Similarity=0.541 Sum_probs=56.0
Q ss_pred HHHHHHHhh----cCCCeEEEE-EEeeCCC--CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy4080 193 EQQINHIFS----KYGPVERVE-VVIDAKT--GRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRV 253 (403)
Q Consensus 193 e~~L~~~F~----~~G~i~~v~-i~~d~~t--g~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V 253 (403)
+++|+++|. +||.|.+|. |+.++.+ +.++|||||+|.+.++|.+|++.|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578899998 999999995 7777766 899999999999999999999999999999999876
No 67
>KOG0415|consensus
Probab=99.28 E-value=1.1e-11 Score=116.09 Aligned_cols=88 Identities=33% Similarity=0.497 Sum_probs=81.8
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q psy4080 173 RENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIR 252 (403)
Q Consensus 173 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~ 252 (403)
....+|.+.|||..|.+-+|.++|.-+|+.||.|.+|.|++|.+||.+..||||+|.+.+++++|.-.|+...|+++.|.
T Consensus 233 Ad~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIH 312 (479)
T KOG0415|consen 233 ADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIH 312 (479)
T ss_pred cccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEE
Confidence 34456778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCC
Q psy4080 253 VDFSVTQR 260 (403)
Q Consensus 253 V~~a~~~~ 260 (403)
|.+++.-.
T Consensus 313 VDFSQSVs 320 (479)
T KOG0415|consen 313 VDFSQSVS 320 (479)
T ss_pred eehhhhhh
Confidence 99976543
No 68
>KOG0146|consensus
Probab=99.27 E-value=4.8e-12 Score=114.57 Aligned_cols=87 Identities=23% Similarity=0.382 Sum_probs=81.5
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
+.+.+|+|||-.||.+..+.+|..+|-.||.|++.++..|+.|+.+|.|+||.|.++.+|+.||.+|||+.|+-+.|+|.
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eccCCCC
Q psy4080 255 FSVTQRA 261 (403)
Q Consensus 255 ~a~~~~~ 261 (403)
+-.++..
T Consensus 361 LKRPkda 367 (371)
T KOG0146|consen 361 LKRPKDA 367 (371)
T ss_pred hcCcccc
Confidence 8765543
No 69
>KOG0120|consensus
Probab=99.27 E-value=5.4e-11 Score=119.00 Aligned_cols=158 Identities=18% Similarity=0.255 Sum_probs=114.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy4080 177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFS 256 (403)
Q Consensus 177 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a 256 (403)
...++|||++||..+++.++.++...||++....++.+..+|.++||||.+|.++.....|+..|||+.+.++.|.|..|
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCCCCCCCCc-----CCCCC----CcccCCCceeeeCCCCC-------ccccchHHHHHHhcCCcceEEEEEEeee-C
Q psy4080 257 VTQRAHTPTPGI-----YMGRP----TYEQLNNTQSELGSLLS-------EKHAIKGGKFEEVFGEIATVVGVGAVTM-T 319 (403)
Q Consensus 257 ~~~~~~~~~~~~-----~~~~~----~~~~~~~~~~~vg~l~~-------~~~~~~~~~l~~~Fg~~g~v~~v~~~~~-~ 319 (403)
............ +.+-. ......+..+.+.|+.. .-.++-++++...++.++.|.+|.++.. .
T Consensus 367 ~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~ 446 (500)
T KOG0120|consen 367 IVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYP 446 (500)
T ss_pred hccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCC
Confidence 765432221111 11100 01111122222222221 1133445667777899999999999987 3
Q ss_pred CCCCCcc--eeeeeecc
Q psy4080 320 EMSGNGR--ISPLQFSG 334 (403)
Q Consensus 320 ~~~~~~g--~~fv~f~~ 334 (403)
+....-| --||+|+.
T Consensus 447 ~~~~~~G~GkVFVefas 463 (500)
T KOG0120|consen 447 DENPVPGTGKVFVEFAD 463 (500)
T ss_pred CCCcCCCcccEEEEecC
Confidence 3322233 37899964
No 70
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.24 E-value=4.2e-11 Score=85.68 Aligned_cols=56 Identities=34% Similarity=0.729 Sum_probs=50.6
Q ss_pred HHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy4080 196 INHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFS 256 (403)
Q Consensus 196 L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a 256 (403)
|.++|++||+|..+.+..+. +++|||+|.+.++|.+|++.|||..+.|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999997653 569999999999999999999999999999999986
No 71
>KOG0109|consensus
Probab=99.19 E-value=2.4e-11 Score=111.43 Aligned_cols=112 Identities=25% Similarity=0.360 Sum_probs=90.6
Q ss_pred CCceeeeechhhHHHHHHHHHh------HhhhhCCCCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCC
Q psy4080 144 GRGKIIIAVVTEVEEEAEATAM------VEEFADGRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKT 217 (403)
Q Consensus 144 g~g~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~t 217 (403)
.+|||-+.....++.+...... .-+..........+.+|+||||.+.++.++|++.|++||+|.+|.|++|
T Consensus 37 NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--- 113 (346)
T KOG0109|consen 37 NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--- 113 (346)
T ss_pred ccceEEeecccccHHHHhhcccceecceEEEEEeccccCCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc---
Confidence 4788888777777666653321 0111122233567889999999999999999999999999999999987
Q ss_pred CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccCCCCCC
Q psy4080 218 GRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVTQRAHT 263 (403)
Q Consensus 218 g~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~~~~~~~ 263 (403)
|+||.|.-.++|..|++.|++.++.|++++|+++..+-...
T Consensus 114 -----y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrlrta 154 (346)
T KOG0109|consen 114 -----YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTA 154 (346)
T ss_pred -----eeEEEEeeccchHHHHhcccccccccceeeeeeeccccccC
Confidence 99999999999999999999999999999999987765433
No 72
>KOG1457|consensus
Probab=99.18 E-value=3e-10 Score=100.60 Aligned_cols=85 Identities=22% Similarity=0.334 Sum_probs=69.0
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEe-eCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC---CeE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVI-DAKTGRSRGFCFVYFESRDDAAAAKDACTGMEID---GRQ 250 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~---g~~ 250 (403)
++...+||||.+||.++..-+|..+|..|--.+.+.|.. ++.....+-+|||+|.+..+|.+|+.+|||..++ +..
T Consensus 30 ~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred cccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 345579999999999999999999999986666665533 2222234569999999999999999999999986 788
Q ss_pred EEEEeccCC
Q psy4080 251 IRVDFSVTQ 259 (403)
Q Consensus 251 i~V~~a~~~ 259 (403)
|+|++|+..
T Consensus 110 LhiElAKSN 118 (284)
T KOG1457|consen 110 LHIELAKSN 118 (284)
T ss_pred eEeeehhcC
Confidence 999888754
No 73
>KOG0110|consensus
Probab=99.15 E-value=4.8e-11 Score=121.11 Aligned_cols=117 Identities=19% Similarity=0.298 Sum_probs=97.2
Q ss_pred CCCCceeeeechhhHHHHHHHHHh------------H-----hhhhCCCCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCC
Q psy4080 142 YGGRGKIIIAVVTEVEEEAEATAM------------V-----EEFADGRENPQPSRCLGVFGLSIYTTEQQINHIFSKYG 204 (403)
Q Consensus 142 ~~g~g~~~~~~~~~~~~~~~~~~~------------~-----~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G 204 (403)
.-|||||.|...+.+..+.....- . .............++|+|.|||+..+-.+++++|..||
T Consensus 559 SmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFG 638 (725)
T KOG0110|consen 559 SMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFG 638 (725)
T ss_pred ccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccccccccccccceeeeeccchHHHHHHHHHHHhccc
Confidence 458999999999999888877540 0 00111122233357999999999999999999999999
Q ss_pred CeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q psy4080 205 PVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVT 258 (403)
Q Consensus 205 ~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~~ 258 (403)
.|.+|+|+.....+.++|||||+|-++.+|.+|+++|..+.|-|+.|.++||..
T Consensus 639 qlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 639 QLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred ceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 999999988656677899999999999999999999999999999999999854
No 74
>KOG4205|consensus
Probab=99.15 E-value=5.4e-11 Score=113.50 Aligned_cols=123 Identities=24% Similarity=0.326 Sum_probs=99.0
Q ss_pred CCCCceeeeechhhHHHHHHHHHhH-------------hhhhCCCCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEE
Q psy4080 142 YGGRGKIIIAVVTEVEEEAEATAMV-------------EEFADGRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVER 208 (403)
Q Consensus 142 ~~g~g~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~ 208 (403)
..+|||+.|+.++............ ..............+||||+||.++++++|+++|++||.|..
T Consensus 47 srgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~ 126 (311)
T KOG4205|consen 47 SRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVAD 126 (311)
T ss_pred cccccceecCCCcchheeecccccccCCccccceeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEe
Confidence 4689999999888776665543220 011111122224669999999999999999999999999999
Q ss_pred EEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccCCCCCCCC
Q psy4080 209 VEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVTQRAHTPT 265 (403)
Q Consensus 209 v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~~~~~~~~~ 265 (403)
+.++.|..+..++||+||+|.+++.+.+++ ...-+.|+|+.+.|..|.++......
T Consensus 127 ~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~f~~~~gk~vevkrA~pk~~~~~~ 182 (311)
T KOG4205|consen 127 VVIMYDKTTSRPRGFGFVTFDSEDSVDKVT-LQKFHDFNGKKVEVKRAIPKEVMQST 182 (311)
T ss_pred eEEeecccccccccceeeEeccccccceec-ccceeeecCceeeEeeccchhhcccc
Confidence 999999999999999999999999999999 44888999999999999887765544
No 75
>KOG0124|consensus
Probab=99.09 E-value=6.5e-10 Score=104.80 Aligned_cols=121 Identities=14% Similarity=0.175 Sum_probs=97.1
Q ss_pred CCCCCceeeeechhhHHHHHHHHHhHhhhh------CC-------------CCCCCCCCEEEEcCCCCCCcHHHHHHHhh
Q psy4080 141 SYGGRGKIIIAVVTEVEEEAEATAMVEEFA------DG-------------RENPQPSRCLGVFGLSIYTTEQQINHIFS 201 (403)
Q Consensus 141 ~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~------~~-------------~~~~~~~~~l~V~nLp~~~te~~L~~~F~ 201 (403)
.+.||.|+.+..++.+.-+.+..+-..--. .. .++...-+.|||..+.++++|+||+..|+
T Consensus 153 kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFE 232 (544)
T KOG0124|consen 153 KHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFE 232 (544)
T ss_pred cccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHH
Confidence 367899999988877666655433111000 00 01122357899999999999999999999
Q ss_pred cCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccCCCC
Q psy4080 202 KYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVTQRA 261 (403)
Q Consensus 202 ~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~~~~~ 261 (403)
.||+|+.|.+.+++.++.+|||+|++|.+......||..||-+.|+|..|+|..+...+.
T Consensus 233 AFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP~ 292 (544)
T KOG0124|consen 233 AFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPD 292 (544)
T ss_pred hhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCCCc
Confidence 999999999999999999999999999999999999999999999999999987765543
No 76
>KOG0106|consensus
Probab=99.09 E-value=1.8e-10 Score=103.70 Aligned_cols=139 Identities=20% Similarity=0.204 Sum_probs=96.3
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q psy4080 180 RCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVTQ 259 (403)
Q Consensus 180 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~~~ 259 (403)
..||||+||+.+.+.+|..||..||.|.+|.|.. ||+||+|.+..+|.-|+..||+..|.|..+.|+++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 4699999999999999999999999999998743 49999999999999999999999999988999998754
Q ss_pred CCCCCC-CCc----CCCCCCcccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 260 RAHTPT-PGI----YMGRPTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 260 ~~~~~~-~~~----~~~~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
...... ... ..............+.|.++...+.+.++++.|..+|++... .+ ...++||+|+.
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~---~~--------~~~~~~v~Fs~ 142 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYV---DA--------RRNFAFVEFSE 142 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchh---hh--------hccccceeehh
Confidence 322211 100 000001112233456666666555556655555555544211 11 45678999976
Q ss_pred ccc
Q psy4080 335 GME 337 (403)
Q Consensus 335 a~e 337 (403)
...
T Consensus 143 ~~d 145 (216)
T KOG0106|consen 143 QED 145 (216)
T ss_pred hhh
Confidence 543
No 77
>KOG4454|consensus
Probab=99.08 E-value=8.6e-11 Score=103.75 Aligned_cols=127 Identities=17% Similarity=0.279 Sum_probs=96.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy4080 176 PQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDF 255 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~ 255 (403)
+...+||||+|+...++|+-|.++|-+.|+|..|.|..++ .++.| ||||.|.++..+.-|++.|||..+.+.+|.|.+
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 4456899999999999999999999999999999998774 45666 999999999999999999999999999999876
Q ss_pred ccCCCCCCCCCCcCCCCCCcccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeee
Q psy4080 256 SVTQRAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQF 332 (403)
Q Consensus 256 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f 332 (403)
-..... + -|...+++ +.+.+.|..-+.+..+++.++.+ +.+.-++|+++
T Consensus 84 r~G~sh--------------a----------pld~r~~~---ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~ 132 (267)
T KOG4454|consen 84 RCGNSH--------------A----------PLDERVTE---EILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTY 132 (267)
T ss_pred ccCCCc--------------c----------hhhhhcch---hhheeeecccCCCCCcccccccc-CCccCccchhh
Confidence 422110 0 01122222 33555566666677788888755 66666677766
No 78
>KOG0129|consensus
Probab=99.06 E-value=1.6e-09 Score=106.83 Aligned_cols=154 Identities=22% Similarity=0.237 Sum_probs=104.3
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEe-eCCC--CCcce---EEEEEecCHHHHHHHHHHhCCceeCC
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVI-DAKT--GRSRG---FCFVYFESRDDAAAAKDACTGMEIDG 248 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-d~~t--g~~rG---~afV~f~~~~~a~~Al~~l~g~~l~g 248 (403)
...-+++||||+||++++|+.|...|..||.+. |.... .... --++| |+|+.|+++..+...|.++.- .-..
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~-~~~~ 332 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE-GEGN 332 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh-cccc
Confidence 345579999999999999999999999999874 33331 1111 12566 999999999999887765432 1111
Q ss_pred eEEEEEeccCCCCC-CC-----CCCcCCCCCCcccCCCceeeeCCCCCccccchHHHHHH-hcCCcceEEEEEEeeeCCC
Q psy4080 249 RQIRVDFSVTQRAH-TP-----TPGIYMGRPTYEQLNNTQSELGSLLSEKHAIKGGKFEE-VFGEIATVVGVGAVTMTEM 321 (403)
Q Consensus 249 ~~i~V~~a~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~-~Fg~~g~v~~v~~~~~~~~ 321 (403)
--++|.-..-+.+. .. ....|+-..........+||||+||..++.++|..|++ +|| .|..+.|-+|.+-
T Consensus 333 ~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyG---gV~yaGIDtD~k~ 409 (520)
T KOG0129|consen 333 YYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFG---GVLYVGIDTDPKL 409 (520)
T ss_pred eEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcC---ceEEEEeccCccc
Confidence 22222221111110 00 11122222233344568999999999999999999999 666 5667889999889
Q ss_pred CCCcceeeeeec
Q psy4080 322 SGNGRISPLQFS 333 (403)
Q Consensus 322 ~~~~g~~fv~f~ 333 (403)
+-++|.+-|+|+
T Consensus 410 KYPkGaGRVtFs 421 (520)
T KOG0129|consen 410 KYPKGAGRVTFS 421 (520)
T ss_pred CCCCCcceeeec
Confidence 999999888885
No 79
>KOG4208|consensus
Probab=99.03 E-value=7.8e-10 Score=97.22 Aligned_cols=84 Identities=21% Similarity=0.300 Sum_probs=76.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcC-CCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 176 PQPSRCLGVFGLSIYTTEQQINHIFSKY-GPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~~te~~L~~~F~~~-G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
.....-+||..||.-+.+.+|..+|.+| |.|..+++.+++.||.++|||||+|.+++.|.-|-+.||+..|.++-|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3445679999999999999999999998 778888888999999999999999999999999999999999999999999
Q ss_pred eccCC
Q psy4080 255 FSVTQ 259 (403)
Q Consensus 255 ~a~~~ 259 (403)
+-.+.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 87544
No 80
>KOG4661|consensus
Probab=98.97 E-value=1.9e-09 Score=106.69 Aligned_cols=84 Identities=30% Similarity=0.425 Sum_probs=78.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy4080 177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFS 256 (403)
Q Consensus 177 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a 256 (403)
.-+++|||.+|...+-..+|+.+|++||.|+-.+|+++..+.-.+.|+||++.+.++|.+||+.|+.++|.|+.|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34689999999999999999999999999999999999888888899999999999999999999999999999999988
Q ss_pred cCCC
Q psy4080 257 VTQR 260 (403)
Q Consensus 257 ~~~~ 260 (403)
+...
T Consensus 483 KNEp 486 (940)
T KOG4661|consen 483 KNEP 486 (940)
T ss_pred ccCc
Confidence 7654
No 81
>KOG1548|consensus
Probab=98.89 E-value=2.4e-08 Score=93.98 Aligned_cols=155 Identities=15% Similarity=0.199 Sum_probs=106.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeE--------EEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC
Q psy4080 176 PQPSRCLGVFGLSIYTTEQQINHIFSKYGPVE--------RVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEID 247 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~--------~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~ 247 (403)
+..+..|||.|||.++|-+++.++|++||-|. .|+|.++ ..|+.||=|.+.|...+++..|++.|++..|.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd-~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRD-NQGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEec-CCCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 34567799999999999999999999999875 3788887 45999999999999999999999999999999
Q ss_pred CeEEEEEeccCCCCCCCCC-------------------CcC--CCC--CCcccCCCceeeeCCCCCccc-c-------ch
Q psy4080 248 GRQIRVDFSVTQRAHTPTP-------------------GIY--MGR--PTYEQLNNTQSELGSLLSEKH-A-------IK 296 (403)
Q Consensus 248 g~~i~V~~a~~~~~~~~~~-------------------~~~--~~~--~~~~~~~~~~~~vg~l~~~~~-~-------~~ 296 (403)
|+.|+|+.|+-+......+ +.+ ... .......+.+|.+.||..... + .-
T Consensus 210 g~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dl 289 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDL 289 (382)
T ss_pred CcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHH
Confidence 9999999887543211100 000 000 012223456777788766321 1 11
Q ss_pred HHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeeccc
Q psy4080 297 GGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSGG 335 (403)
Q Consensus 297 ~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~a 335 (403)
.++|.+...+||.|..|.+- + ..+.|++-|.|...
T Consensus 290 kedl~eec~K~G~v~~vvv~-d---~hPdGvvtV~f~n~ 324 (382)
T KOG1548|consen 290 KEDLTEECEKFGQVRKVVVY-D---RHPDGVVTVSFRNN 324 (382)
T ss_pred HHHHHHHHHHhCCcceEEEe-c---cCCCceeEEEeCCh
Confidence 13444545555655544332 2 34678888888643
No 82
>KOG0153|consensus
Probab=98.88 E-value=1.1e-08 Score=96.20 Aligned_cols=80 Identities=23% Similarity=0.410 Sum_probs=69.8
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHH-hCCceeCCeEE
Q psy4080 173 RENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDA-CTGMEIDGRQI 251 (403)
Q Consensus 173 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~-l~g~~l~g~~i 251 (403)
+.+.....+|||++|-..++|.+|+++|.+||+|.+|.++..+ ++|||+|.+.+.|+.|.++ ++...|+|..|
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl 295 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRL 295 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEE
Confidence 3445567899999999999999999999999999999998753 4999999999999998775 46566899999
Q ss_pred EEEeccC
Q psy4080 252 RVDFSVT 258 (403)
Q Consensus 252 ~V~~a~~ 258 (403)
.|.|..+
T Consensus 296 ~i~Wg~~ 302 (377)
T KOG0153|consen 296 KIKWGRP 302 (377)
T ss_pred EEEeCCC
Confidence 9999877
No 83
>KOG4212|consensus
Probab=98.87 E-value=4.4e-09 Score=101.39 Aligned_cols=78 Identities=27% Similarity=0.382 Sum_probs=71.1
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy4080 174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRV 253 (403)
Q Consensus 174 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V 253 (403)
....+.|+|||.|||+++|++.|++-|..||.|..+.|+ ..|+++| .|.|.++++|+.|+..|+|..|+|+.|+|
T Consensus 531 gaarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V 605 (608)
T KOG4212|consen 531 GAARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKV 605 (608)
T ss_pred cccccccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeee
Confidence 445678999999999999999999999999999999984 4578887 89999999999999999999999999999
Q ss_pred Eec
Q psy4080 254 DFS 256 (403)
Q Consensus 254 ~~a 256 (403)
.|.
T Consensus 606 ~y~ 608 (608)
T KOG4212|consen 606 TYF 608 (608)
T ss_pred eeC
Confidence 873
No 84
>KOG0533|consensus
Probab=98.81 E-value=1.8e-08 Score=92.72 Aligned_cols=85 Identities=29% Similarity=0.507 Sum_probs=76.8
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
......+|+|.|||+.+++++|+++|..||.+..+-|..+ .+|.+.|.|-|.|...++|..|++.+++..|+|++|++.
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 3344578999999999999999999999999999999888 679999999999999999999999999999999999998
Q ss_pred eccCCC
Q psy4080 255 FSVTQR 260 (403)
Q Consensus 255 ~a~~~~ 260 (403)
......
T Consensus 158 ~i~~~~ 163 (243)
T KOG0533|consen 158 IISSPS 163 (243)
T ss_pred EecCcc
Confidence 875543
No 85
>KOG1190|consensus
Probab=98.79 E-value=8.7e-08 Score=92.00 Aligned_cols=122 Identities=20% Similarity=0.276 Sum_probs=92.5
Q ss_pred CCEEEEcCCCCC-CcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy4080 179 SRCLGVFGLSIY-TTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSV 257 (403)
Q Consensus 179 ~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~ 257 (403)
+..|.|.||... +|.+.|..+|..||+|..|+|..++.+ -|.|+|.+...|+.|++.|+|+.|.|+.|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd-----~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKD-----NALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCc-----ceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 688999999665 899999999999999999999987653 79999999999999999999999999999999998
Q ss_pred CCCCCCCCCCc--------CCC----------CCCcc--cCCCceeeeCCCCCccccchHHHHHHhcC
Q psy4080 258 TQRAHTPTPGI--------YMG----------RPTYE--QLNNTQSELGSLLSEKHAIKGGKFEEVFG 305 (403)
Q Consensus 258 ~~~~~~~~~~~--------~~~----------~~~~~--~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg 305 (403)
.+....+..+. +.. ..... -....++.+.|||..+++++++.+|..-|
T Consensus 372 H~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g 439 (492)
T KOG1190|consen 372 HTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPG 439 (492)
T ss_pred CccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCC
Confidence 76544433211 110 00011 12235677889988877777665555443
No 86
>KOG4209|consensus
Probab=98.69 E-value=2.6e-08 Score=91.83 Aligned_cols=84 Identities=27% Similarity=0.354 Sum_probs=77.5
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
.......+||+|+.+.+|.+++...|+.||.|..|.|..|+.++.++|||||+|.+.+.++.|+. |++..|.|+.|.|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 34567899999999999999999999999999999999999999999999999999999999996 99999999999998
Q ss_pred eccCC
Q psy4080 255 FSVTQ 259 (403)
Q Consensus 255 ~a~~~ 259 (403)
+....
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 86544
No 87
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.64 E-value=2.2e-07 Score=73.65 Aligned_cols=81 Identities=19% Similarity=0.227 Sum_probs=71.2
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhc--CCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC----CeEEEE
Q psy4080 180 RCLGVFGLSIYTTEQQINHIFSK--YGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEID----GRQIRV 253 (403)
Q Consensus 180 ~~l~V~nLp~~~te~~L~~~F~~--~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~----g~~i~V 253 (403)
+||.|.|||...|.++|.+++.. .|...-+.++.|..++.+.|||||.|.+++.|.+..+.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999998875 377888999999999999999999999999999999999999875 466788
Q ss_pred EeccCCC
Q psy4080 254 DFSVTQR 260 (403)
Q Consensus 254 ~~a~~~~ 260 (403)
.||.-+.
T Consensus 82 ~yAriQG 88 (97)
T PF04059_consen 82 SYARIQG 88 (97)
T ss_pred ehhHhhC
Confidence 8876543
No 88
>KOG0116|consensus
Probab=98.61 E-value=7.2e-08 Score=95.64 Aligned_cols=80 Identities=24% Similarity=0.410 Sum_probs=68.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy4080 178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSV 257 (403)
Q Consensus 178 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~ 257 (403)
...+|||.|||.++++++|+++|..||+|+...|..-...++..+||||+|.+.++++.||++ +...|++++|.|+.-.
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 345599999999999999999999999999988876443344448999999999999999977 6888999999998654
Q ss_pred C
Q psy4080 258 T 258 (403)
Q Consensus 258 ~ 258 (403)
.
T Consensus 366 ~ 366 (419)
T KOG0116|consen 366 P 366 (419)
T ss_pred c
Confidence 3
No 89
>KOG0226|consensus
Probab=98.60 E-value=4.7e-08 Score=88.49 Aligned_cols=83 Identities=22% Similarity=0.319 Sum_probs=76.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy4080 176 PQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDF 255 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~ 255 (403)
+....+||.|.|..+++.+.|...|.+|-.....++++|+.||+++||+||.|.++.++..||.+|+|..++.++|++..
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred ccC
Q psy4080 256 SVT 258 (403)
Q Consensus 256 a~~ 258 (403)
+..
T Consensus 267 S~w 269 (290)
T KOG0226|consen 267 SEW 269 (290)
T ss_pred hhH
Confidence 543
No 90
>KOG0151|consensus
Probab=98.51 E-value=2.9e-07 Score=93.89 Aligned_cols=82 Identities=22% Similarity=0.339 Sum_probs=72.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCC---CCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy4080 177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAK---TGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRV 253 (403)
Q Consensus 177 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~---tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V 253 (403)
+..++|||+||++.++|+.|...|..||+|..|+|+..+. ....+-|+||.|-+..+|++|++.|+|..+.+.++++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 4568899999999999999999999999999999987542 2334569999999999999999999999999999999
Q ss_pred EeccC
Q psy4080 254 DFSVT 258 (403)
Q Consensus 254 ~~a~~ 258 (403)
.|+++
T Consensus 252 gWgk~ 256 (877)
T KOG0151|consen 252 GWGKA 256 (877)
T ss_pred ccccc
Confidence 99854
No 91
>KOG1190|consensus
Probab=98.50 E-value=1.2e-07 Score=90.94 Aligned_cols=76 Identities=17% Similarity=0.278 Sum_probs=62.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCC--ceeCCeEEEEE
Q psy4080 177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTG--MEIDGRQIRVD 254 (403)
Q Consensus 177 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g--~~l~g~~i~V~ 254 (403)
.+++.|.++|||++++|++|.+++.+||.|+.+.+...+. .||++|.+.+.|...+..... -.+.|++|.|.
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq 99 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQ 99 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCcceeeh
Confidence 4788999999999999999999999999999998876544 899999999998874433222 23678888888
Q ss_pred eccC
Q psy4080 255 FSVT 258 (403)
Q Consensus 255 ~a~~ 258 (403)
|+..
T Consensus 100 ~sn~ 103 (492)
T KOG1190|consen 100 YSNH 103 (492)
T ss_pred hhhH
Confidence 7553
No 92
>KOG4660|consensus
Probab=98.43 E-value=1.7e-07 Score=93.50 Aligned_cols=72 Identities=31% Similarity=0.447 Sum_probs=65.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q psy4080 176 PQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIR 252 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~ 252 (403)
..+..+|+|-|||..|++++|..+|+.||+|..|+. |-..+|.+||+|.+..+|+.|+++|++.+|.|+.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 345789999999999999999999999999999654 455678999999999999999999999999999888
No 93
>KOG4210|consensus
Probab=98.42 E-value=1.7e-07 Score=89.26 Aligned_cols=149 Identities=17% Similarity=0.062 Sum_probs=113.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy4080 178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSV 257 (403)
Q Consensus 178 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~ 257 (403)
...++||+++..++.+.++..++..+|.+..+.+........++|+++|.|+..+.+..||.......+.+..+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 47899999999999999999999999998888887777788999999999999999999995533346666666655544
Q ss_pred CCCCCCCCCCcCCCCCCcccCCCceee-eCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 258 TQRAHTPTPGIYMGRPTYEQLNNTQSE-LGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
........+.. ........+++ |++|+..++.++ |++.|+.++.|+.++++++..++.+++|+|+.|..
T Consensus 167 ~~~~~~~n~~~-----~~~~~~s~~~~~~~~~~f~~~~d~---~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~ 236 (285)
T KOG4210|consen 167 RRGLRPKNKLS-----RLSSGPSDTIFFVGELDFSLTRDD---LKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSA 236 (285)
T ss_pred cccccccchhc-----ccccCccccceeecccccccchHH---HhhhccCcCcceeeccCCCCCccchhhhhhhhhhh
Confidence 33311111110 01112223344 899988765555 66999999999999999999999999999999964
No 94
>KOG1995|consensus
Probab=98.20 E-value=1.4e-06 Score=83.01 Aligned_cols=85 Identities=21% Similarity=0.341 Sum_probs=77.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeE--------EEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC
Q psy4080 176 PQPSRCLGVFGLSIYTTEQQINHIFSKYGPVE--------RVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEID 247 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~--------~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~ 247 (403)
.....+|||-+||..+++++|.++|.++|.|. .|.|.+|++|+++||-|.|+|.+...|++|++-+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 34567899999999999999999999999885 4788899999999999999999999999999999999999
Q ss_pred CeEEEEEeccCCC
Q psy4080 248 GRQIRVDFSVTQR 260 (403)
Q Consensus 248 g~~i~V~~a~~~~ 260 (403)
+.+|+|.+|..+.
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999998886654
No 95
>KOG1365|consensus
Probab=98.20 E-value=2.1e-06 Score=82.04 Aligned_cols=153 Identities=21% Similarity=0.154 Sum_probs=97.4
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcC----CCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy4080 181 CLGVFGLSIYTTEQQINHIFSKY----GPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFS 256 (403)
Q Consensus 181 ~l~V~nLp~~~te~~L~~~F~~~----G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a 256 (403)
.|-..+||+++|+.++.+||..- |..+.|.++.. -+|+..|-|||.|..+++|+.||.. |...|+-+.|.+-.+
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFRS 240 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHHH
Confidence 45567999999999999999742 34556666653 4688999999999999999999965 666676666665433
Q ss_pred cCCC--------CCC------CCCCcCCCC--CCcccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCC
Q psy4080 257 VTQR--------AHT------PTPGIYMGR--PTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTE 320 (403)
Q Consensus 257 ~~~~--------~~~------~~~~~~~~~--~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~ 320 (403)
.... ... ..+....++ ..........+-+.+||...+-+++-+++.-|.....-.+|.++.+ .
T Consensus 241 TaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~ 319 (508)
T KOG1365|consen 241 TAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-G 319 (508)
T ss_pred hHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-C
Confidence 3211 000 001111011 1111222466778888766555554444444444444446788765 7
Q ss_pred CCCCcceeeeeecccc
Q psy4080 321 MSGNGRISPLQFSGGM 336 (403)
Q Consensus 321 ~~~~~g~~fv~f~~a~ 336 (403)
.+.+.|-|||++..+.
T Consensus 320 qGrPSGeAFIqm~nae 335 (508)
T KOG1365|consen 320 QGRPSGEAFIQMRNAE 335 (508)
T ss_pred CCCcChhhhhhhhhhH
Confidence 7888888999996553
No 96
>KOG0149|consensus
Probab=98.19 E-value=2.7e-06 Score=76.56 Aligned_cols=55 Identities=24% Similarity=0.228 Sum_probs=46.4
Q ss_pred cCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 277 QLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 277 ~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
+..-++||||+|++.+..+++...||.||+| +...+++|..++.+||++||+|..
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI---~eavvitd~~t~rskGyGfVTf~d 63 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEI---VEAVVITDKNTGRSKGYGFVTFRD 63 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCce---EEEEEEeccCCccccceeeEEeec
Confidence 3445789999999998888988888888755 556689999999999999999964
No 97
>KOG0128|consensus
Probab=98.18 E-value=2.5e-07 Score=96.23 Aligned_cols=124 Identities=19% Similarity=0.173 Sum_probs=96.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy4080 178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSV 257 (403)
Q Consensus 178 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~ 257 (403)
...++||.||+..+.+++|...|..+|.|..+++.....++..+|+|||+|..++++.+|+....+.. .|
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~-~g--------- 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCF-FG--------- 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhh-hh---------
Confidence 34789999999999999999999999999888887667789999999999999999999996543333 33
Q ss_pred CCCCCCCCCCcCCCCCCcccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeeccccc
Q psy4080 258 TQRAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSGGME 337 (403)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~a~e 337 (403)
...++|.|+|+..|.+.++.|+..+| .++..++++. ..+.++|.+||.|.....
T Consensus 736 ----------------------K~~v~i~g~pf~gt~e~~k~l~~~~g---n~~~~~~vt~-r~gkpkg~a~v~y~~ea~ 789 (881)
T KOG0128|consen 736 ----------------------KISVAISGPPFQGTKEELKSLASKTG---NVTSLRLVTV-RAGKPKGKARVDYNTEAD 789 (881)
T ss_pred ----------------------hhhhheeCCCCCCchHHHHhhccccC---Cccccchhhh-hccccccceeccCCCcch
Confidence 12366778887777777666655554 5666666654 678899999999976443
No 98
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=98.15 E-value=4.5e-06 Score=71.68 Aligned_cols=56 Identities=16% Similarity=0.110 Sum_probs=45.3
Q ss_pred cCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeeccc
Q psy4080 277 QLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSGG 335 (403)
Q Consensus 277 ~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~a 335 (403)
....++|||+||+..+++.+++++|+.| +.|+.|.++++..++.+++||||+|+..
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~---G~I~~v~i~~d~~tg~~kGfaFV~F~~~ 86 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHF---GDVVDAKVIVDRETGRSRGFGFVNFNDE 86 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcC---CCeEEEEEEecCCCCCcceEEEEEECCH
Confidence 3456789999999998777766666555 5777888999999999999999999753
No 99
>KOG4211|consensus
Probab=98.10 E-value=2.2e-05 Score=77.56 Aligned_cols=112 Identities=24% Similarity=0.293 Sum_probs=83.3
Q ss_pred CCCceeeeechhhHHHHHHHHHhHhhh----------------hC--CCCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCC
Q psy4080 143 GGRGKIIIAVVTEVEEEAEATAMVEEF----------------AD--GRENPQPSRCLGVFGLSIYTTEQQINHIFSKYG 204 (403)
Q Consensus 143 ~g~g~~~~~~~~~~~~~~~~~~~~~~~----------------~~--~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G 204 (403)
.|-.+|.+...++.+.+.+...+.... .. ..........|-+.+||+.||+++|.+||+-.-
T Consensus 49 sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~ 128 (510)
T KOG4211|consen 49 SGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLE 128 (510)
T ss_pred CcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCc
Confidence 456789999999999888775432100 00 111123456888999999999999999999765
Q ss_pred CeEE-EEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy4080 205 PVER-VEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFS 256 (403)
Q Consensus 205 ~i~~-v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a 256 (403)
.|.. |.++.+ ..+++.|-|||.|++.+.|++||.. |...|..+-|.|..+
T Consensus 129 Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 129 IVPDGILLPMD-QRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred ccccceeeecc-CCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 4444 445555 4577999999999999999999965 778888888888654
No 100
>KOG1456|consensus
Probab=98.01 E-value=5.9e-05 Score=72.09 Aligned_cols=143 Identities=21% Similarity=0.288 Sum_probs=105.8
Q ss_pred CCCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHH--HhCCceeCCe
Q psy4080 172 GRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKD--ACTGMEIDGR 249 (403)
Q Consensus 172 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~--~l~g~~l~g~ 249 (403)
....+.++-.|.|.+|-..++|.+|.+.++.||+|..|.++..+. .|.|+|++.+.|.+++. +-+...+.|+
T Consensus 24 dphk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r------~alvefedi~~akn~Vnfaa~n~i~i~gq 97 (494)
T KOG1456|consen 24 DPHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKR------QALVEFEDIEGAKNCVNFAADNQIYIAGQ 97 (494)
T ss_pred CCCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccc------eeeeeeccccchhhheehhccCcccccCc
Confidence 334556778899999999999999999999999999998876544 89999999999999874 2244557888
Q ss_pred EEEEEeccCCCCCCCCCCcCCCCCCcccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceee
Q psy4080 250 QIRVDFSVTQRAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISP 329 (403)
Q Consensus 250 ~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~f 329 (403)
.--+.++..+....+. .+.....++.+-.|.+..+.++.+-|+.....+|.|..|.|.+. ..--|.
T Consensus 98 ~Al~NyStsq~i~R~g---------~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-----ngVQAm 163 (494)
T KOG1456|consen 98 QALFNYSTSQCIERPG---------DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-----NGVQAM 163 (494)
T ss_pred hhhcccchhhhhccCC---------CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-----cceeeE
Confidence 8888887655432221 22233345555566666777888899999999999987777642 222378
Q ss_pred eeecc
Q psy4080 330 LQFSG 334 (403)
Q Consensus 330 v~f~~ 334 (403)
|+|+.
T Consensus 164 VEFds 168 (494)
T KOG1456|consen 164 VEFDS 168 (494)
T ss_pred Eeech
Confidence 88853
No 101
>KOG0126|consensus
Probab=97.91 E-value=6.6e-06 Score=71.24 Aligned_cols=51 Identities=14% Similarity=0.148 Sum_probs=45.1
Q ss_pred CceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeec
Q psy4080 280 NTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFS 333 (403)
Q Consensus 280 ~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~ 333 (403)
..=||||+|+...|+-+ |.-.|+++|+|+.|.+++|..|+.++||||+-|+
T Consensus 35 sA~Iyiggl~~~LtEgD---il~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYE 85 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGD---ILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYE 85 (219)
T ss_pred ceEEEECCCcccccCCc---EEEEeeccCceEEEEEEecCCCCcccceEEEEec
Confidence 45699999998877777 6777888889999999999999999999999996
No 102
>KOG1457|consensus
Probab=97.91 E-value=9.4e-06 Score=72.45 Aligned_cols=68 Identities=19% Similarity=0.309 Sum_probs=55.9
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCcee
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEI 246 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l 246 (403)
......||||.||.+++||++|+.+|+.|-...-++|.. ..|.+ .|||+|...+.|..||..|+|..|
T Consensus 206 ~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~--~~g~~--vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 206 GARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA--RGGMP--VAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred cchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec--CCCcc--eEeecHHHHHHHHHHHHHhhccee
Confidence 344567999999999999999999999997665555532 33433 999999999999999999998876
No 103
>KOG1456|consensus
Probab=97.89 E-value=0.00024 Score=68.04 Aligned_cols=79 Identities=22% Similarity=0.291 Sum_probs=69.3
Q ss_pred CCCCCEEEEcCCCCC-CcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 176 PQPSRCLGVFGLSIY-TTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
..+++.++|-+|... ++-+.|..+|-.||.|+.|++++.+. |-|.|++.++.+++.|+..||+..+.|.+|.|.
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~-----gtamVemgd~~aver~v~hLnn~~lfG~kl~v~ 358 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP-----GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVC 358 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc-----ceeEEEcCcHHHHHHHHHHhccCccccceEEEe
Confidence 456789999999765 66788999999999999999988642 589999999999999999999999999999998
Q ss_pred eccCC
Q psy4080 255 FSVTQ 259 (403)
Q Consensus 255 ~a~~~ 259 (403)
+++..
T Consensus 359 ~SkQ~ 363 (494)
T KOG1456|consen 359 VSKQN 363 (494)
T ss_pred ecccc
Confidence 87643
No 104
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.88 E-value=4.8e-05 Score=57.80 Aligned_cols=68 Identities=25% Similarity=0.315 Sum_probs=47.1
Q ss_pred CEEEEcCCCCCCcHHHH----HHHhhcCC-CeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 180 RCLGVFGLSIYTTEQQI----NHIFSKYG-PVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 180 ~~l~V~nLp~~~te~~L----~~~F~~~G-~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
..|||.|||.+.+...| +.++.-|| .|..|. .+.|+|.|.+.+.|..|.+.|+|..+.|..|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 46999999999887655 55666775 566652 2489999999999999999999999999999999
Q ss_pred ecc
Q psy4080 255 FSV 257 (403)
Q Consensus 255 ~a~ 257 (403)
+..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 873
No 105
>KOG4210|consensus
Probab=97.86 E-value=8.5e-06 Score=77.72 Aligned_cols=83 Identities=24% Similarity=0.392 Sum_probs=75.1
Q ss_pred CCCEEE-EcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy4080 178 PSRCLG-VFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFS 256 (403)
Q Consensus 178 ~~~~l~-V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a 256 (403)
...++| |++|+.++++++|+.+|..+|.|..+.+..+..++.++|||||.|.+...+..++.. +...+.++++.|.+.
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 345666 999999999999999999999999999999999999999999999999999999976 788899999999987
Q ss_pred cCCCC
Q psy4080 257 VTQRA 261 (403)
Q Consensus 257 ~~~~~ 261 (403)
.+...
T Consensus 262 ~~~~~ 266 (285)
T KOG4210|consen 262 EPRPK 266 (285)
T ss_pred CCCcc
Confidence 66544
No 106
>KOG4849|consensus
Probab=97.79 E-value=1.5e-05 Score=75.35 Aligned_cols=76 Identities=18% Similarity=0.278 Sum_probs=68.0
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCC--CeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy4080 180 RCLGVFGLSIYTTEQQINHIFSKYG--PVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDF 255 (403)
Q Consensus 180 ~~l~V~nLp~~~te~~L~~~F~~~G--~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~ 255 (403)
-.+|||||-|.+|+++|.+.+...| .|.++++..++.+|++||||+|...+...+.+.|+.|...+|.|+.-.|..
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 4689999999999999999998876 578888888889999999999999999999999999999999997666643
No 107
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.78 E-value=4.4e-05 Score=61.81 Aligned_cols=59 Identities=24% Similarity=0.302 Sum_probs=39.0
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCc
Q psy4080 180 RCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGM 244 (403)
Q Consensus 180 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~ 244 (403)
+.|+|.+++..++.++|+++|+.||.|..|.+..... -|||-|.+++.|++|++++.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhc
Confidence 5688999999999999999999999999998865432 8999999999999999876433
No 108
>KOG4206|consensus
Probab=97.72 E-value=0.00014 Score=65.38 Aligned_cols=78 Identities=19% Similarity=0.382 Sum_probs=68.7
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC-CeEEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEID-GRQIRV 253 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~-g~~i~V 253 (403)
...+...+|+.|||..++.+.|..+|.+|.....|+++... .+.|||+|.+...|..|...|++..|- ...+.|
T Consensus 142 ~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i 216 (221)
T KOG4206|consen 142 MAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQI 216 (221)
T ss_pred CCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEe
Confidence 35678899999999999999999999999999999988753 359999999999999999999999886 788888
Q ss_pred Eecc
Q psy4080 254 DFSV 257 (403)
Q Consensus 254 ~~a~ 257 (403)
.++.
T Consensus 217 ~~a~ 220 (221)
T KOG4206|consen 217 TFAK 220 (221)
T ss_pred cccC
Confidence 8763
No 109
>KOG0106|consensus
Probab=97.72 E-value=2.4e-05 Score=70.72 Aligned_cols=72 Identities=31% Similarity=0.438 Sum_probs=62.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy4080 177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFS 256 (403)
Q Consensus 177 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a 256 (403)
...+.|+|-||+..+.+.+|.+.|..+|.+....+ ..+++||+|.+.++|.+||+.|++..+.++.|.+..+
T Consensus 97 ~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 97 RTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred cccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeeccc
Confidence 44678999999999999999999999999955544 2349999999999999999999999999999999543
No 110
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.70 E-value=0.0001 Score=69.61 Aligned_cols=82 Identities=17% Similarity=0.435 Sum_probs=63.8
Q ss_pred CCCEEEEcCCCCCCcHHHH------HHHhhcCCCeEEEEEEeeCCCC-CcceEE--EEEecCHHHHHHHHHHhCCceeCC
Q psy4080 178 PSRCLGVFGLSIYTTEQQI------NHIFSKYGPVERVEVVIDAKTG-RSRGFC--FVYFESRDDAAAAKDACTGMEIDG 248 (403)
Q Consensus 178 ~~~~l~V~nLp~~~te~~L------~~~F~~~G~i~~v~i~~d~~tg-~~rG~a--fV~f~~~~~a~~Al~~l~g~~l~g 248 (403)
+.+-+||-+||+.+..+++ .++|.+||.|..|.|.+..... .-.+.+ ||+|.+.|+|..||.+.+|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 4567899999998876662 4799999999998776532111 112223 999999999999999999999999
Q ss_pred eEEEEEeccCC
Q psy4080 249 RQIRVDFSVTQ 259 (403)
Q Consensus 249 ~~i~V~~a~~~ 259 (403)
+.|+..|...+
T Consensus 193 r~lkatYGTTK 203 (480)
T COG5175 193 RVLKATYGTTK 203 (480)
T ss_pred ceEeeecCchH
Confidence 99999886543
No 111
>KOG0112|consensus
Probab=97.64 E-value=1.9e-05 Score=83.06 Aligned_cols=133 Identities=20% Similarity=0.206 Sum_probs=95.5
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
....+.+||+|||+..+++.+|+..|..+|.|..|.|-..+. +.---||||.|.+...+..|+..+.+..|..-.+++.
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 344579999999999999999999999999999999876532 2223399999999999999998888888765555555
Q ss_pred eccCCCCCCCCCCcCCCCCCcccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 255 FSVTQRAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 255 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
+... ....++.+++++|...+....+...|..||.+..| .+ .++++ ++|++|+.
T Consensus 447 lG~~-----------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~I---dy----~hgq~--yayi~yes 500 (975)
T KOG0112|consen 447 LGQP-----------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRII---DY----RHGQP--YAYIQYES 500 (975)
T ss_pred cccc-----------------ccccceeeccCCCCCCChHHHHHHHhhccCcceee---ec----ccCCc--ceeeeccc
Confidence 4321 22345678999998776666656666666554432 22 34443 46777753
No 112
>KOG0122|consensus
Probab=97.49 E-value=0.00014 Score=65.91 Aligned_cols=53 Identities=9% Similarity=0.056 Sum_probs=43.6
Q ss_pred CCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 279 NNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 279 ~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
...++-|.||+.+.++.+|++||..| |.|..|.+++|.+++.++|||||.|..
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~f---g~i~rvylardK~TG~~kGFAFVtF~s 240 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPF---GPITRVYLARDKETGLSKGFAFVTFES 240 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhcc---CccceeEEEEccccCcccceEEEEEec
Confidence 44679999999998888876555555 566688899999999999999999975
No 113
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=97.48 E-value=0.00017 Score=52.98 Aligned_cols=48 Identities=15% Similarity=0.182 Sum_probs=38.5
Q ss_pred eeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 283 SELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 283 ~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
|||+|||..+++.++.++|+.||.+ ..+.+..+ ..+..+++|||+|..
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i---~~~~~~~~-~~~~~~~~a~V~F~~ 48 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKI---ESIKVMRN-SSGKSKGYAFVEFES 48 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTE---EEEEEEEE-TTSSEEEEEEEEESS
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhc---cccccccc-ccccccceEEEEEcC
Confidence 6899999998888877777776655 56667766 788889999999975
No 114
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.48 E-value=0.00026 Score=49.76 Aligned_cols=52 Identities=21% Similarity=0.378 Sum_probs=41.9
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHH
Q psy4080 180 RCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAK 238 (403)
Q Consensus 180 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al 238 (403)
+.|-|.+.++...+. +..+|..||+|+.+.+..... +.||+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~~~------~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPESTN------WMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCCCc------EEEEEECCHHHHHhhC
Confidence 568899999877644 555888999999988863222 9999999999999985
No 115
>KOG0113|consensus
Probab=97.41 E-value=0.00027 Score=65.87 Aligned_cols=54 Identities=9% Similarity=-0.011 Sum_probs=45.5
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
..-.+|||+-|+..+++.+|+..|+.||. |+.|.+|++..+++++|+|||+|+.
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~---IkrirlV~d~vTgkskGYAFIeye~ 152 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGP---IKRIRLVRDKVTGKSKGYAFIEYEH 152 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCc---ceeEEEeeecccCCccceEEEEecc
Confidence 34578999999999888888888777775 5567789999999999999999975
No 116
>KOG2314|consensus
Probab=97.39 E-value=0.00045 Score=69.47 Aligned_cols=78 Identities=24% Similarity=0.382 Sum_probs=63.4
Q ss_pred CCCCEEEEcCCCCCCc------HHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC-Ce
Q psy4080 177 QPSRCLGVFGLSIYTT------EQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEID-GR 249 (403)
Q Consensus 177 ~~~~~l~V~nLp~~~t------e~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~-g~ 249 (403)
.-...|+|-|+|.--. ..-|..+|+++|+|+...++.+..+| .+||.|++|.+..+|+.|++.|||..|+ .+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 4457899999986422 23456789999999999999886655 9999999999999999999999999975 45
Q ss_pred EEEEEe
Q psy4080 250 QIRVDF 255 (403)
Q Consensus 250 ~i~V~~ 255 (403)
...|..
T Consensus 135 tf~v~~ 140 (698)
T KOG2314|consen 135 TFFVRL 140 (698)
T ss_pred eEEeeh
Confidence 666654
No 117
>KOG4207|consensus
Probab=97.38 E-value=0.00017 Score=63.90 Aligned_cols=54 Identities=11% Similarity=0.036 Sum_probs=46.7
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.....|.|-||..-++.++|..+|+.||.+|+ |.|+.|..|.+++|||||-|..
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgD---VyIPrdr~Tr~sRgFaFVrf~~ 64 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGD---VYIPRDRYTRQSRGFAFVRFHD 64 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccc---eecccccccccccceeEEEeee
Confidence 34567899999999999999999999988875 5689999999999999999954
No 118
>KOG1365|consensus
Probab=97.35 E-value=0.0019 Score=62.23 Aligned_cols=151 Identities=17% Similarity=0.146 Sum_probs=98.5
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q psy4080 179 SRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVT 258 (403)
Q Consensus 179 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~~ 258 (403)
+..|-..+||+..++.+|..+|.-.....-...+.....|...|.|.|.|.+.|.-+.|++. +.+.+.++.|.|-.+..
T Consensus 60 ~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYka~g 138 (508)
T KOG1365|consen 60 NVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYKATG 138 (508)
T ss_pred ceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeeeccCc
Confidence 34455679999999999999997542211112222234577788999999999999999966 88889999999987765
Q ss_pred CCCCCCCCCcCCCCCCccc-CCCceeeeCCCCCccccchHHHHHHhcCC---cc-eEEEEEEeeeCCCCCCcceeeeeec
Q psy4080 259 QRAHTPTPGIYMGRPTYEQ-LNNTQSELGSLLSEKHAIKGGKFEEVFGE---IA-TVVGVGAVTMTEMSGNGRISPLQFS 333 (403)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~-~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~---~g-~v~~v~~~~~~~~~~~~g~~fv~f~ 333 (403)
..--.............-. .+.-.+-+.+||.++++.+ +.+.|+. ++ .++.|-||+. ..+...|=|||.|+
T Consensus 139 e~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~d---Vv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa 214 (508)
T KOG1365|consen 139 EEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALD---VVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFA 214 (508)
T ss_pred hhheEecCCccccCCCCCCcccceEEEecCCCCCcchHH---HHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEec
Confidence 4432222222111111111 2234566788888766665 6666763 22 4557778864 45677788999996
Q ss_pred c
Q psy4080 334 G 334 (403)
Q Consensus 334 ~ 334 (403)
-
T Consensus 215 ~ 215 (508)
T KOG1365|consen 215 C 215 (508)
T ss_pred C
Confidence 3
No 119
>KOG0121|consensus
Probab=97.30 E-value=0.00051 Score=56.41 Aligned_cols=53 Identities=8% Similarity=-0.006 Sum_probs=44.7
Q ss_pred CCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 279 NNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 279 ~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
...++|||||... .++++|+++|+.+|+|..|-+--|..+..+=||+||+|-.
T Consensus 35 ~S~tvyVgNlSfy---ttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~ 87 (153)
T KOG0121|consen 35 KSCTVYVGNLSFY---TTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYS 87 (153)
T ss_pred hcceEEEeeeeee---ecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEec
Confidence 3578999999766 5566799999999999988888888899999999999964
No 120
>KOG0129|consensus
Probab=97.29 E-value=0.00066 Score=67.81 Aligned_cols=68 Identities=25% Similarity=0.245 Sum_probs=62.6
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHhh-cCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHH
Q psy4080 173 RENPQPSRCLGVFGLSIYTTEQQINHIFS-KYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDA 240 (403)
Q Consensus 173 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~ 240 (403)
.....+.+|||||+||.-+|.++|..+|+ -||.|..|-|-+|++-+.++|-|=|+|.+-..-.+||.+
T Consensus 364 sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 364 NQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 34556789999999999999999999999 699999999999999999999999999999999999964
No 121
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=97.28 E-value=0.00049 Score=50.89 Aligned_cols=48 Identities=13% Similarity=0.211 Sum_probs=38.0
Q ss_pred eeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 283 SELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 283 ~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
|+|+|||..+++ ++|.+.|..++.|..+.+....+ +..+++|||+|..
T Consensus 1 v~i~nlp~~~~~---~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~ 48 (70)
T PF14259_consen 1 VYISNLPPSTTE---EDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSS 48 (70)
T ss_dssp EEEESSTTT--H---HHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESS
T ss_pred CEEeCCCCCCCH---HHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCC
Confidence 689999987555 45777777777888999998866 8899999999974
No 122
>KOG4676|consensus
Probab=97.24 E-value=0.00053 Score=66.14 Aligned_cols=76 Identities=17% Similarity=0.240 Sum_probs=61.2
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCC---CCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy4080 180 RCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAK---TGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFS 256 (403)
Q Consensus 180 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~---tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a 256 (403)
..|.|.||.+.+|.++++.||.-.|.|..+.|+.... -....-.|||.|.+...+..|- .|..+++-++.|.|-.+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEec
Confidence 3799999999999999999999999999998876322 1234459999999999999987 66777776776666543
No 123
>KOG4307|consensus
Probab=97.23 E-value=0.00088 Score=68.93 Aligned_cols=76 Identities=25% Similarity=0.384 Sum_probs=65.9
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy4080 180 RCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDF 255 (403)
Q Consensus 180 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~ 255 (403)
+.|-+.|+|++++-+||.+||..|-.+-.-.+++-...|...|-|.|.|++.++|..|...|++..|..+.|.|.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 3788999999999999999999997655444444457799999999999999999999999999999999988864
No 124
>KOG2193|consensus
Probab=97.22 E-value=0.00016 Score=70.26 Aligned_cols=109 Identities=16% Similarity=0.188 Sum_probs=83.1
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCC-eEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCce-eCCeEEEEEecc
Q psy4080 180 RCLGVFGLSIYTTEQQINHIFSKYGP-VERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGME-IDGRQIRVDFSV 257 (403)
Q Consensus 180 ~~l~V~nLp~~~te~~L~~~F~~~G~-i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~-l~g~~i~V~~a~ 257 (403)
.++|++||.+.++..+|..+|...-- ...-.++. -|||||.+.+...|.+|++.++|.. +.|+.+.|....
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 46999999999999999999986411 11111221 2599999999999999999999976 899999998875
Q ss_pred CCCCCCCCCCcCCCCCCcccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEE
Q psy4080 258 TQRAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVG 312 (403)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~ 312 (403)
++.. ..+++.+.||+....++-++.|...||.++.+..
T Consensus 75 ~kkq-----------------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eq 112 (584)
T KOG2193|consen 75 PKKQ-----------------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQ 112 (584)
T ss_pred hHHH-----------------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhh
Confidence 5432 2234677899888888888888888887766653
No 125
>KOG0107|consensus
Probab=97.17 E-value=0.00038 Score=60.20 Aligned_cols=50 Identities=16% Similarity=0.163 Sum_probs=38.8
Q ss_pred CceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeeccccc
Q psy4080 280 NTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSGGME 337 (403)
Q Consensus 280 ~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~a~e 337 (403)
+++||||||...++..+|+.+|..||.+-.|- +.. .+-|||||+|+..-.
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvW---vAr-----nPPGfAFVEFed~RD 59 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVW---VAR-----NPPGFAFVEFEDPRD 59 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEE---Eee-----cCCCceEEeccCccc
Confidence 67899999999999999888888888665543 332 267899999976443
No 126
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.14 E-value=0.0021 Score=51.37 Aligned_cols=76 Identities=17% Similarity=0.236 Sum_probs=49.9
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEE-eeC------CCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeE-
Q psy4080 179 SRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVV-IDA------KTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQ- 250 (403)
Q Consensus 179 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~-~d~------~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~- 250 (403)
.+-|.|-+.|+. ....|.+.|++||+|.+..-+ .+. ........-.|+|.++.+|.+||.. ||..|.|.-
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEE
Confidence 456888899988 457788899999999877400 000 0001122899999999999999955 999998864
Q ss_pred EEEEec
Q psy4080 251 IRVDFS 256 (403)
Q Consensus 251 i~V~~a 256 (403)
+-|.+.
T Consensus 84 vGV~~~ 89 (100)
T PF05172_consen 84 VGVKPC 89 (100)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 446665
No 127
>KOG0125|consensus
Probab=97.13 E-value=0.00075 Score=63.77 Aligned_cols=52 Identities=10% Similarity=0.089 Sum_probs=40.9
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.....|+|.|||+..-+.||...|+.||.| ..|.|+. +..++|||+||+|+.
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~V---ldVEIIf--NERGSKGFGFVTmen 145 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKV---LDVEIIF--NERGSKGFGFVTMEN 145 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCce---eeEEEEe--ccCCCCccceEEecC
Confidence 345789999999999999988888777755 4556664 456789999999963
No 128
>PLN03213 repressor of silencing 3; Provisional
Probab=97.12 E-value=0.00059 Score=67.61 Aligned_cols=50 Identities=20% Similarity=0.108 Sum_probs=38.9
Q ss_pred CCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeeccc
Q psy4080 279 NNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSGG 335 (403)
Q Consensus 279 ~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~a 335 (403)
....||||||...+++.+|..+|..|| .|..|.|+ .+++ +|||||+|...
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFG---sVkdVEIp--RETG--RGFAFVEMssd 58 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMG---TVDAVEFV--RTKG--RSFAYIDFSPS 58 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcC---CeeEEEEe--cccC--CceEEEEecCC
Confidence 457899999999988888777766665 56667777 4555 99999999764
No 129
>PLN03120 nucleic acid binding protein; Provisional
Probab=97.12 E-value=0.00051 Score=63.95 Aligned_cols=49 Identities=12% Similarity=0.099 Sum_probs=36.9
Q ss_pred CceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 280 NTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 280 ~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
..+|||+||+..+++.+++++|..|| .|..|.++.+.+ .++|+||+|..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G---~I~~V~I~~d~~---~~GfAFVtF~d 52 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSG---DIEYVEMQSENE---RSQIAYVTFKD 52 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC---CeEEEEEeecCC---CCCEEEEEeCc
Confidence 46899999999977777666666555 666777777653 46899999974
No 130
>KOG1548|consensus
Probab=97.09 E-value=0.0028 Score=60.38 Aligned_cols=81 Identities=19% Similarity=0.267 Sum_probs=64.0
Q ss_pred CCCCCCCEEEEcCCCC----CCc-------HHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhC
Q psy4080 174 ENPQPSRCLGVFGLSI----YTT-------EQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACT 242 (403)
Q Consensus 174 ~~~~~~~~l~V~nLp~----~~t-------e~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~ 242 (403)
......++|.|.||=. ..+ +++|.+-.++||.|..|.|.- ..+.|.+-|.|.+.++|..||+.|+
T Consensus 260 sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~ 335 (382)
T KOG1548|consen 260 SKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMD 335 (382)
T ss_pred ccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhc
Confidence 3445678999999822 222 355666678999999998753 3467899999999999999999999
Q ss_pred CceeCCeEEEEEeccC
Q psy4080 243 GMEIDGRQIRVDFSVT 258 (403)
Q Consensus 243 g~~l~g~~i~V~~a~~ 258 (403)
|..++|+.|.......
T Consensus 336 GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 336 GRWFDGRQLTASIWDG 351 (382)
T ss_pred CeeecceEEEEEEeCC
Confidence 9999999999887643
No 131
>KOG4368|consensus
Probab=97.04 E-value=0.0013 Score=66.42 Aligned_cols=6 Identities=17% Similarity=0.429 Sum_probs=2.2
Q ss_pred HhhcCC
Q psy4080 199 IFSKYG 204 (403)
Q Consensus 199 ~F~~~G 204 (403)
+|...|
T Consensus 726 ~yKGvG 731 (757)
T KOG4368|consen 726 QYKGVG 731 (757)
T ss_pred hhcccC
Confidence 333333
No 132
>KOG3152|consensus
Probab=97.03 E-value=0.00054 Score=62.67 Aligned_cols=73 Identities=21% Similarity=0.296 Sum_probs=62.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCC--------CCcce----EEEEEecCHHHHHHHHHHhCCce
Q psy4080 178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKT--------GRSRG----FCFVYFESRDDAAAAKDACTGME 245 (403)
Q Consensus 178 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~t--------g~~rG----~afV~f~~~~~a~~Al~~l~g~~ 245 (403)
..-.||+++||+.+...-|+++|+.||.|-.|.|.....+ |.+++ -|.|+|.+...|..+.+.||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 5578999999999999999999999999999998776544 33333 35699999999999999999999
Q ss_pred eCCeE
Q psy4080 246 IDGRQ 250 (403)
Q Consensus 246 l~g~~ 250 (403)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99864
No 133
>KOG0105|consensus
Probab=96.98 E-value=0.0065 Score=53.11 Aligned_cols=68 Identities=19% Similarity=0.189 Sum_probs=58.4
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCcee--CCeEEEE
Q psy4080 179 SRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEI--DGRQIRV 253 (403)
Q Consensus 179 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l--~g~~i~V 253 (403)
...|.|.+||+..++++|++++.+.|.|....+.+| |++.|+|...|+.+-|+..|+.+.+ .|....+
T Consensus 115 e~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yi 184 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYI 184 (241)
T ss_pred ceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccccccCcCcEeeE
Confidence 357999999999999999999999999999999877 3899999999999999999987765 3444333
No 134
>KOG1855|consensus
Probab=96.98 E-value=0.00058 Score=66.63 Aligned_cols=70 Identities=16% Similarity=0.278 Sum_probs=58.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEee---CCCC--C--------cceEEEEEecCHHHHHHHHHHhC
Q psy4080 176 PQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVID---AKTG--R--------SRGFCFVYFESRDDAAAAKDACT 242 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d---~~tg--~--------~rG~afV~f~~~~~a~~Al~~l~ 242 (403)
.-++++|.+-|||.+-.-+.|.++|..+|.|..|+|+.. +.+. . .+-+|+|+|...+.|.+|.+.|+
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 347899999999999888999999999999999999875 3221 1 14589999999999999998775
Q ss_pred Cce
Q psy4080 243 GME 245 (403)
Q Consensus 243 g~~ 245 (403)
...
T Consensus 308 ~e~ 310 (484)
T KOG1855|consen 308 PEQ 310 (484)
T ss_pred hhh
Confidence 443
No 135
>KOG0111|consensus
Probab=96.97 E-value=0.00049 Score=61.50 Aligned_cols=55 Identities=11% Similarity=0.112 Sum_probs=45.7
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeeccc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSGG 335 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~a 335 (403)
...+++|||+|... .+++-|...|=+||+|+.|.++.|.+++++++|+||+|..+
T Consensus 8 ~~KrtlYVGGlade---VtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~a 62 (298)
T KOG0111|consen 8 NQKRTLYVGGLADE---VTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEA 62 (298)
T ss_pred ccceeEEeccchHH---HHHHHHHhccccccchhhcccccchhcccccceeEEEeecc
Confidence 45678999999554 56666777788888888999999999999999999999643
No 136
>KOG0226|consensus
Probab=96.89 E-value=0.00068 Score=61.97 Aligned_cols=143 Identities=13% Similarity=0.063 Sum_probs=100.2
Q ss_pred CCEEEEcCCCCCCcHHH-H--HHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy4080 179 SRCLGVFGLSIYTTEQQ-I--NHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDF 255 (403)
Q Consensus 179 ~~~l~V~nLp~~~te~~-L--~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~ 255 (403)
--..|++++-..+..+- | ...|+.|-.+....++.+. -+.-.+++|+.|.....-.++-..-+++.+.-.+|++
T Consensus 96 vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~-- 172 (290)
T KOG0226|consen 96 VFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRL-- 172 (290)
T ss_pred cccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceee--
Confidence 34567777766666554 3 6778888777777787763 4667789999999887777776555666666665444
Q ss_pred ccCCCCCCCCCCcCCCCCCcccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 256 SVTQRAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 256 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
+....-..+ .+.....++-.||+|.|-+.++++.+...|..|-.|- ..+++++.-+++++||+||.|..
T Consensus 173 a~gtswedP-------sl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~---~akviRdkRTgKSkgygfVSf~~ 241 (290)
T KOG0226|consen 173 AAGTSWEDP-------SLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQ---KAKVIRDKRTGKSKGYGFVSFRD 241 (290)
T ss_pred ccccccCCc-------ccccCccccceeecccccccccHHHHHHHHHhccchh---hccccccccccccccceeeeecC
Confidence 322221111 1223345678899999998888888777777776654 56678888999999999999953
No 137
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.84 E-value=0.0051 Score=52.17 Aligned_cols=73 Identities=25% Similarity=0.368 Sum_probs=52.3
Q ss_pred CCCCEEEEcCCCC------CCcH---HHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC
Q psy4080 177 QPSRCLGVFGLSI------YTTE---QQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEID 247 (403)
Q Consensus 177 ~~~~~l~V~nLp~------~~te---~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~ 247 (403)
++..||.|.=+.+ ...+ .+|.+.|..||++.-|+++-+ .-.|+|.+.+.|.+|+ .|+|..+.
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaal-s~dg~~v~ 95 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAAL-SLDGIQVN 95 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHH-HGCCSEET
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHH-ccCCcEEC
Confidence 4456777765541 1222 367788899999988887765 5699999999999999 77999999
Q ss_pred CeEEEEEeccC
Q psy4080 248 GRQIRVDFSVT 258 (403)
Q Consensus 248 g~~i~V~~a~~ 258 (403)
|+.|+|..-.+
T Consensus 96 g~~l~i~LKtp 106 (146)
T PF08952_consen 96 GRTLKIRLKTP 106 (146)
T ss_dssp TEEEEEEE---
T ss_pred CEEEEEEeCCc
Confidence 99999987543
No 138
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=96.79 E-value=0.0024 Score=59.27 Aligned_cols=52 Identities=17% Similarity=0.126 Sum_probs=41.5
Q ss_pred CceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 280 NTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 280 ~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
..++||+||+..+++.++.++|..| |.|..+.++.+..++.++|+|||.|..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~---g~~~~~~~~~d~~~~~~~g~~~v~f~~ 166 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKF---GPVKRVRLVRDRETGKSRGFAFVEFES 166 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhc---CceeEEEeeeccccCccCceEEEEecC
Confidence 5889999999776666655555555 455788888888899999999999964
No 139
>KOG0114|consensus
Probab=96.77 E-value=0.0029 Score=50.11 Aligned_cols=52 Identities=10% Similarity=0.084 Sum_probs=40.8
Q ss_pred cCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 277 QLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 277 ~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
+..+..+||.|||..++. ++++++||++|.|..|++- .+...+|-|||-|+.
T Consensus 15 pevnriLyirNLp~~ITs---eemydlFGkyg~IrQIRiG---~~k~TrGTAFVVYed 66 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITS---EEMYDLFGKYGTIRQIRIG---NTKETRGTAFVVYED 66 (124)
T ss_pred hhhheeEEEecCCccccH---HHHHHHhhcccceEEEEec---CccCcCceEEEEehH
Confidence 345678999999888554 5588889999999888875 566778889999863
No 140
>PLN03121 nucleic acid binding protein; Provisional
Probab=96.73 E-value=0.0019 Score=59.24 Aligned_cols=49 Identities=12% Similarity=0.080 Sum_probs=36.3
Q ss_pred CceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 280 NTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 280 ~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
..+++|+||+..+++.+++++|..|| .|..|.++.+. ..++|+||+|..
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G---~I~~V~I~~D~---et~gfAfVtF~d 53 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCG---AIEHVEIIRSG---EYACTAYVTFKD 53 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcC---CeEEEEEecCC---CcceEEEEEECC
Confidence 36799999999988877666666655 55566677663 445799999964
No 141
>KOG0108|consensus
Probab=96.64 E-value=0.0015 Score=65.61 Aligned_cols=51 Identities=14% Similarity=0.173 Sum_probs=44.4
Q ss_pred ceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 281 TQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 281 ~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
..+|||||+...+++ +|.+.|+++|.|..++++.|.+++..+||+|++|..
T Consensus 19 ~~v~vgnip~~~se~---~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~ 69 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEE---QLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTD 69 (435)
T ss_pred cceEecCCCCcccHH---HHHHHHhccCccceeeecccccCCCcCceeeEecCc
Confidence 679999998875554 577777889999999999999999999999999964
No 142
>KOG0128|consensus
Probab=96.61 E-value=0.0024 Score=67.40 Aligned_cols=108 Identities=14% Similarity=0.158 Sum_probs=86.2
Q ss_pred CCCCCceeeeechhhHHHHHHHHHhHhhhhCCCCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCc
Q psy4080 141 SYGGRGKIIIAVVTEVEEEAEATAMVEEFADGRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRS 220 (403)
Q Consensus 141 ~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~ 220 (403)
..+|.+.+.|..+..+.++..-..... .....|||.|+|+..|.++|+.++..+|.+.++.++.. ..|++
T Consensus 707 ~~rG~~Y~~F~~~~~~~aaV~f~d~~~---------~gK~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~-r~gkp 776 (881)
T KOG0128|consen 707 RFRGKAYVEFLKPEHAGAAVAFRDSCF---------FGKISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTV-RAGKP 776 (881)
T ss_pred ccccceeeEeecCCchhhhhhhhhhhh---------hhhhhhheeCCCCCCchHHHHhhccccCCccccchhhh-hcccc
Confidence 355777888887777666654332211 11467999999999999999999999999999998886 57999
Q ss_pred ceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q psy4080 221 RGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVT 258 (403)
Q Consensus 221 rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~~ 258 (403)
+|.|||.|.++.+|..++..++...+.-+.+.|..+.+
T Consensus 777 kg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 777 KGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred ccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 99999999999999999887777777777777776554
No 143
>KOG2416|consensus
Probab=96.60 E-value=0.0018 Score=65.67 Aligned_cols=78 Identities=23% Similarity=0.338 Sum_probs=64.7
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhh-cCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCcee---CCeE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFS-KYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEI---DGRQ 250 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l---~g~~ 250 (403)
....++.|+|.||-.-+|.-+|++++. ..|.|++.+|-+- |..|||.|.+.++|.+.+.+|||..+ +.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI------KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI------KSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh------hcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 455689999999999999999999999 4667777765433 33899999999999999999999986 5688
Q ss_pred EEEEeccC
Q psy4080 251 IRVDFSVT 258 (403)
Q Consensus 251 i~V~~a~~ 258 (403)
|.|.|...
T Consensus 514 L~adf~~~ 521 (718)
T KOG2416|consen 514 LIADFVRA 521 (718)
T ss_pred eEeeecch
Confidence 88888654
No 144
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.52 E-value=0.013 Score=44.76 Aligned_cols=58 Identities=21% Similarity=0.300 Sum_probs=43.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCC
Q psy4080 177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTG 243 (403)
Q Consensus 177 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g 243 (403)
...+..+|. .|..+...||.++|+.||.|. |..+.| | -|||.....+.|..|+..+..
T Consensus 7 ~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d--T-----SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 7 SRDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND--T-----SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp SGCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT--T-----EEEEEECCCHHHHHHHHHHTT
T ss_pred CcceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC--C-----cEEEEeecHHHHHHHHHHhcc
Confidence 344666776 999999999999999999984 444444 2 899999999999999987753
No 145
>KOG2202|consensus
Probab=96.46 E-value=0.0013 Score=60.37 Aligned_cols=61 Identities=28% Similarity=0.409 Sum_probs=50.3
Q ss_pred HHHHHhh-cCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy4080 195 QINHIFS-KYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFS 256 (403)
Q Consensus 195 ~L~~~F~-~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a 256 (403)
+|...|+ +||+|+.+.|..+ ....-.|-+||.|...++|++|++.||+--+.|++|...+.
T Consensus 84 d~f~E~~~kygEiee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 3334444 8999999877654 34566889999999999999999999999999999998875
No 146
>KOG4307|consensus
Probab=96.38 E-value=0.011 Score=61.07 Aligned_cols=151 Identities=10% Similarity=-0.025 Sum_probs=94.9
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q psy4080 179 SRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVT 258 (403)
Q Consensus 179 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~~ 258 (403)
.+.+-+.+.+++..+.+++++|... .|..+.|..+...+...|-++|+|....++++|++. |...+-.+.|.|..+..
T Consensus 311 ~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~g~ 388 (944)
T KOG4307|consen 311 KYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPPGN 388 (944)
T ss_pred hheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCCCc
Confidence 3445556899999999999999743 355666666655555578999999999999999965 66666677777754332
Q ss_pred CCCCCC------CC----------------CcC-CC-CCCcccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEE
Q psy4080 259 QRAHTP------TP----------------GIY-MG-RPTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVG 314 (403)
Q Consensus 259 ~~~~~~------~~----------------~~~-~~-~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~ 314 (403)
..-... .+ ... .+ ...........|||..|+..+++.+ +...|.....|+.+-
T Consensus 389 ~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~---~v~~f~~~~~Ved~I 465 (944)
T KOG4307|consen 389 LGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVP---PVNKFMGAAAVEDFI 465 (944)
T ss_pred cccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccc---hhhhhhhhhhhhhee
Confidence 211000 00 000 00 0111223346789999988766666 555555554555433
Q ss_pred EeeeCCCCCCcceeeeeecc
Q psy4080 315 AVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 315 ~~~~~~~~~~~g~~fv~f~~ 334 (403)
.++..-++...+.|||.|.-
T Consensus 466 ~lt~~P~~~~~~~afv~F~~ 485 (944)
T KOG4307|consen 466 ELTRLPTDLLRPAAFVAFIH 485 (944)
T ss_pred EeccCCcccccchhhheecc
Confidence 34444566677788888854
No 147
>KOG0112|consensus
Probab=96.31 E-value=0.0064 Score=64.57 Aligned_cols=80 Identities=25% Similarity=0.532 Sum_probs=69.0
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC--eEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDG--RQIR 252 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g--~~i~ 252 (403)
...+.+.+||++|...+....|...|..||.|..|.+-. |.+ ||||.|.+...|+.|++.|-|..|++ +.|.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h----gq~--yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH----GQP--YAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc----CCc--ceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 445678999999999999999999999999999987633 333 99999999999999999999999976 6799
Q ss_pred EEeccCCC
Q psy4080 253 VDFSVTQR 260 (403)
Q Consensus 253 V~~a~~~~ 260 (403)
|.++....
T Consensus 525 vdla~~~~ 532 (975)
T KOG0112|consen 525 VDLASPPG 532 (975)
T ss_pred cccccCCC
Confidence 99987644
No 148
>smart00362 RRM_2 RNA recognition motif.
Probab=96.13 E-value=0.012 Score=42.44 Aligned_cols=48 Identities=15% Similarity=0.129 Sum_probs=35.5
Q ss_pred eeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 282 QSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 282 ~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
+++|+||+...+..++.++|+.|| .|..+.+..+. +.+.+++||+|..
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g---~v~~~~~~~~~--~~~~~~~~v~f~~ 48 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFG---PIESVKIPKDT--GKSKGFAFVEFES 48 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcC---CEEEEEEecCC--CCCCceEEEEeCC
Confidence 478999988877777666666555 55566666554 6778999999974
No 149
>smart00360 RRM RNA recognition motif.
Probab=96.13 E-value=0.011 Score=42.31 Aligned_cols=47 Identities=15% Similarity=0.210 Sum_probs=35.2
Q ss_pred eCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 285 LGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 285 vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
|++|+...++.++.++|+.|| .|..+.+.....++.+++++||+|..
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g---~v~~~~i~~~~~~~~~~~~a~v~f~~ 47 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFG---KIESVRLVRDKDTGKSKGFAFVEFES 47 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhC---CEeEEEEEeCCCCCCCCceEEEEeCC
Confidence 467877777777777776665 55566777766678889999999964
No 150
>KOG0130|consensus
Probab=96.10 E-value=0.0022 Score=53.22 Aligned_cols=55 Identities=4% Similarity=0.001 Sum_probs=45.0
Q ss_pred cCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 277 QLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 277 ~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....-.|||.+++...+++ +|.+.|+.||.|+.+.+--|..++-.+|++.|+|+.
T Consensus 69 SVEGwIi~VtgvHeEatEe---di~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet 123 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEE---DIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYET 123 (170)
T ss_pred ceeeEEEEEeccCcchhHH---HHHHHHhhcccccceeeccccccccccceeeeehHh
Confidence 3445679999998875555 477777888888889999999999999999999974
No 151
>KOG1996|consensus
Probab=95.74 E-value=0.031 Score=52.26 Aligned_cols=64 Identities=25% Similarity=0.253 Sum_probs=51.7
Q ss_pred HHHHHHHhhcCCCeEEEEEEeeCCCCCcc-eEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy4080 193 EQQINHIFSKYGPVERVEVVIDAKTGRSR-GFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFS 256 (403)
Q Consensus 193 e~~L~~~F~~~G~i~~v~i~~d~~tg~~r-G~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a 256 (403)
|+++++-.++||.|..|.|..++...... =-.||+|...++|.+|+-.|||..++|+.+...+.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 35677888999999999888765433222 14699999999999999999999999998877664
No 152
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.65 E-value=0.061 Score=38.90 Aligned_cols=55 Identities=27% Similarity=0.357 Sum_probs=45.2
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcC---CCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHh
Q psy4080 179 SRCLGVFGLSIYTTEQQINHIFSKY---GPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241 (403)
Q Consensus 179 ~~~l~V~nLp~~~te~~L~~~F~~~---G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l 241 (403)
..+|+|.++. +++.++|+.+|..| .....|..+-|. -|-|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 3579999986 47889999999998 234578888774 6889999999999999764
No 153
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=95.64 E-value=0.027 Score=40.70 Aligned_cols=49 Identities=14% Similarity=0.115 Sum_probs=37.0
Q ss_pred eeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 282 QSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 282 ~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
+++|++|+...++.++.++|+.| +.|..+.+..+... ...+++||+|..
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~---g~i~~~~~~~~~~~-~~~~~~~v~f~s 49 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKF---GKVESVRIVRDKDT-KSKGFAFVEFED 49 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhc---CCEEEEEEeeCCCC-CcceEEEEEECC
Confidence 37899999998877777777766 56667777765444 678899999974
No 154
>KOG4208|consensus
Probab=95.55 E-value=0.022 Score=50.76 Aligned_cols=55 Identities=9% Similarity=0.003 Sum_probs=44.6
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....-+++..++...++..+..+|..|+ |.|..+++-+...|+.++|||||+|+.
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~--g~v~r~rlsRnkrTGNSKgYAFVEFEs 101 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFG--GTVTRFRLSRNKRTGNSKGYAFVEFES 101 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcC--CeeEEEEeecccccCCcCceEEEEecc
Confidence 3445678888888877777666666665 788899998999999999999999964
No 155
>KOG2068|consensus
Probab=95.27 E-value=0.0095 Score=56.90 Aligned_cols=81 Identities=21% Similarity=0.438 Sum_probs=63.9
Q ss_pred CCCEEEEcCCCCCCcHHHHH---HHhhcCCCeEEEEEEeeCC----CCCcceEEEEEecCHHHHHHHHHHhCCceeCCeE
Q psy4080 178 PSRCLGVFGLSIYTTEQQIN---HIFSKYGPVERVEVVIDAK----TGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQ 250 (403)
Q Consensus 178 ~~~~l~V~nLp~~~te~~L~---~~F~~~G~i~~v~i~~d~~----tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~ 250 (403)
..+.+||-+|+..+..+.+. ++|.+||.|..|.+..+.. .+..- -+||+|...++|..||...+|+.++|+.
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~-s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTC-SVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCC-cccccccchHhhhhHHHHhhhHHhhhhh
Confidence 44678999999887665553 5899999999998887652 12222 3899999999999999999999999999
Q ss_pred EEEEeccCC
Q psy4080 251 IRVDFSVTQ 259 (403)
Q Consensus 251 i~V~~a~~~ 259 (403)
|+..+...+
T Consensus 155 lka~~gttk 163 (327)
T KOG2068|consen 155 LKASLGTTK 163 (327)
T ss_pred hHHhhCCCc
Confidence 887776554
No 156
>KOG0115|consensus
Probab=95.26 E-value=0.021 Score=52.54 Aligned_cols=75 Identities=24% Similarity=0.391 Sum_probs=62.3
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCce----eCCeEEEEEe
Q psy4080 180 RCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGME----IDGRQIRVDF 255 (403)
Q Consensus 180 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~----l~g~~i~V~~ 255 (403)
..|||.||+..+..+.|.+.|..||+|....++.| ..++..+-++|+|...-.|.+|+..+.-.- ..+.+..|..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 68999999999999999999999999999888877 567888899999999999999998763222 3455555544
No 157
>smart00361 RRM_1 RNA recognition motif.
Probab=95.18 E-value=0.034 Score=41.22 Aligned_cols=38 Identities=11% Similarity=-0.028 Sum_probs=25.2
Q ss_pred chHHHHHH----hcCCcceEEEEEEeeeCCC--CCCcceeeeeecc
Q psy4080 295 IKGGKFEE----VFGEIATVVGVGAVTMTEM--SGNGRISPLQFSG 334 (403)
Q Consensus 295 ~~~~~l~~----~Fg~~g~v~~v~~~~~~~~--~~~~g~~fv~f~~ 334 (403)
.++.++|. .||+++.|.. ++.+..+ +.++|++||+|..
T Consensus 3 ~~l~~~~~~~~~~fG~v~~v~~--v~~~~~~~~~~~rG~~fV~f~~ 46 (70)
T smart00361 3 EDFEREFSEEEEYFGEVGKINK--IYIDNVGYENHKRGNVYITFER 46 (70)
T ss_pred hhHHHHHHHHHHhcCCeeEEEE--EEeCCCCCCCCCcEEEEEEECC
Confidence 45566666 6666655543 3444444 8899999999975
No 158
>KOG0835|consensus
Probab=95.04 E-value=0.083 Score=50.40 Aligned_cols=8 Identities=13% Similarity=-0.126 Sum_probs=3.6
Q ss_pred CCCccccc
Q psy4080 20 KVPVWYLC 27 (403)
Q Consensus 20 ~~~~~~~~ 27 (403)
..|+..+-
T Consensus 270 ~~~a~~~~ 277 (367)
T KOG0835|consen 270 FAPAVDPS 277 (367)
T ss_pred cccccCCC
Confidence 44444444
No 159
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.96 E-value=0.038 Score=49.07 Aligned_cols=82 Identities=15% Similarity=0.078 Sum_probs=51.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhc-CCCe---EEEEEEeeCC-CC-CcceEEEEEecCHHHHHHHHHHhCCceeCC---
Q psy4080 178 PSRCLGVFGLSIYTTEQQINHIFSK-YGPV---ERVEVVIDAK-TG-RSRGFCFVYFESRDDAAAAKDACTGMEIDG--- 248 (403)
Q Consensus 178 ~~~~l~V~nLp~~~te~~L~~~F~~-~G~i---~~v~i~~d~~-tg-~~rG~afV~f~~~~~a~~Al~~l~g~~l~g--- 248 (403)
...+|.|.+||+++||+++.+.+.. ++.. ..+.-..... .. ..-.-|||.|.+.+++...+..++|+.+.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4568999999999999999997776 6655 3333112111 11 123579999999999999999999987632
Q ss_pred --eEEEEEeccCC
Q psy4080 249 --RQIRVDFSVTQ 259 (403)
Q Consensus 249 --~~i~V~~a~~~ 259 (403)
....|++|.-+
T Consensus 86 ~~~~~~VE~Apyq 98 (176)
T PF03467_consen 86 NEYPAVVEFAPYQ 98 (176)
T ss_dssp -EEEEEEEE-SS-
T ss_pred CCcceeEEEcchh
Confidence 34567777543
No 160
>KOG2135|consensus
Probab=94.73 E-value=0.017 Score=57.28 Aligned_cols=73 Identities=22% Similarity=0.316 Sum_probs=57.8
Q ss_pred CEEEEcCCCCCC-cHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q psy4080 180 RCLGVFGLSIYT-TEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVT 258 (403)
Q Consensus 180 ~~l~V~nLp~~~-te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~~ 258 (403)
+.|-+.-.|+.+ |.++|...|.+||.|..|.|-.... -|.|+|.+..+|-.|. ..++..|+++.|+|.|-.+
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~------~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL------HAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCchh------hheeeeeccccccchh-ccccceecCceeEEEEecC
Confidence 444444455554 4589999999999999998855422 7899999999998887 5599999999999999865
Q ss_pred C
Q psy4080 259 Q 259 (403)
Q Consensus 259 ~ 259 (403)
.
T Consensus 446 s 446 (526)
T KOG2135|consen 446 S 446 (526)
T ss_pred C
Confidence 3
No 161
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.63 E-value=0.18 Score=42.49 Aligned_cols=74 Identities=18% Similarity=0.245 Sum_probs=56.0
Q ss_pred CCCCCCEEEEcCCCCCCcH-HHH---HHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeE
Q psy4080 175 NPQPSRCLGVFGLSIYTTE-QQI---NHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQ 250 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te-~~L---~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~ 250 (403)
..++..||.|.=|..++.. +|| ...++.||+|.+|.+.-. . -|.|.|.+..+|-+|+.+++. ...|..
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr-q------savVvF~d~~SAC~Av~Af~s-~~pgtm 153 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR-Q------SAVVVFKDITSACKAVSAFQS-RAPGTM 153 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC-c------eEEEEehhhHHHHHHHHhhcC-CCCCce
Confidence 3456788999877777643 444 455678999999987542 2 799999999999999998765 566777
Q ss_pred EEEEec
Q psy4080 251 IRVDFS 256 (403)
Q Consensus 251 i~V~~a 256 (403)
+.+.|-
T Consensus 154 ~qCsWq 159 (166)
T PF15023_consen 154 FQCSWQ 159 (166)
T ss_pred EEeecc
Confidence 777764
No 162
>KOG0415|consensus
Probab=94.57 E-value=0.049 Score=52.25 Aligned_cols=54 Identities=9% Similarity=0.020 Sum_probs=45.5
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.+.+.+||-.|.+.+++++|+-||..|| .|++|.++.|..++.+--+|||+|+.
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG---~i~sceVIRD~ktgdsLqyaFiEFen 290 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFG---KIVSCEVIRDRKTGDSLQYAFIEFEN 290 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcc---cceeeeEEecccccchhheeeeeecc
Confidence 3457799999999999999888888777 45678889999999999999999974
No 163
>KOG4574|consensus
Probab=94.34 E-value=0.034 Score=58.94 Aligned_cols=80 Identities=26% Similarity=0.324 Sum_probs=67.2
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCce--eCCeEEEEEecc
Q psy4080 180 RCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGME--IDGRQIRVDFSV 257 (403)
Q Consensus 180 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~--l~g~~i~V~~a~ 257 (403)
.+.++-|.+-..+-..|..+|.+||.|.+++..++-. .|.|+|.+.+.|..|+++|+|.+ +.|-+.+|.+|+
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 3455556666788889999999999999999988755 89999999999999999999998 468899999998
Q ss_pred CCCCCCCC
Q psy4080 258 TQRAHTPT 265 (403)
Q Consensus 258 ~~~~~~~~ 265 (403)
.-+...+.
T Consensus 373 ~~~~~ep~ 380 (1007)
T KOG4574|consen 373 TLPMYEPP 380 (1007)
T ss_pred ccccccCC
Confidence 76655443
No 164
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.54 E-value=0.68 Score=37.71 Aligned_cols=67 Identities=10% Similarity=0.181 Sum_probs=47.7
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcC-CCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC
Q psy4080 180 RCLGVFGLSIYTTEQQINHIFSKY-GPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDG 248 (403)
Q Consensus 180 ~~l~V~nLp~~~te~~L~~~F~~~-G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g 248 (403)
..+.+...|..++-++|..+.+.+ ..|..++|++|... ++=.+.++|.+.+.|....+.+||..++.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p--nrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP--NRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC--ceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 344444445555556676665555 35788899887432 45589999999999999999999998753
No 165
>KOG4660|consensus
Probab=93.49 E-value=0.11 Score=52.79 Aligned_cols=83 Identities=17% Similarity=0.195 Sum_probs=64.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhc-CCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCcee---C-CeEEE
Q psy4080 178 PSRCLGVFGLSIYTTEQQINHIFSK-YGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEI---D-GRQIR 252 (403)
Q Consensus 178 ~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l---~-g~~i~ 252 (403)
.-+++.|.|+|...|-..|.+.-++ .|.-..+.++.|-.+..+.|||||.|-+++++..+.+++||+.. + .+...
T Consensus 387 ~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~ 466 (549)
T KOG4660|consen 387 PRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIAS 466 (549)
T ss_pred chhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeee
Confidence 3467778888877777666555333 57777888999988888999999999999999999999999874 3 34566
Q ss_pred EEeccCCC
Q psy4080 253 VDFSVTQR 260 (403)
Q Consensus 253 V~~a~~~~ 260 (403)
|.||.-+.
T Consensus 467 itYArIQG 474 (549)
T KOG4660|consen 467 ITYARIQG 474 (549)
T ss_pred eehhhhhc
Confidence 77775544
No 166
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=92.92 E-value=0.48 Score=35.57 Aligned_cols=59 Identities=22% Similarity=0.342 Sum_probs=36.5
Q ss_pred CCCcHHHHHHHhhcCC-----CeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy4080 189 IYTTEQQINHIFSKYG-----PVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFS 256 (403)
Q Consensus 189 ~~~te~~L~~~F~~~G-----~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a 256 (403)
..++..+|..++...+ .|-.|.|..+ |+||+-.. +.|..+++.|++..+.|++|.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3578889988888764 3567777544 99999886 4788899999999999999999865
No 167
>KOG4285|consensus
Probab=92.77 E-value=0.33 Score=45.88 Aligned_cols=71 Identities=25% Similarity=0.365 Sum_probs=52.7
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeE-EEEEeccC
Q psy4080 180 RCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQ-IRVDFSVT 258 (403)
Q Consensus 180 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~-i~V~~a~~ 258 (403)
.=|-|-++|+.-+ ..|..+|++||+|++.... .+|. +-+|-|.+.-+|.+||.. ||+.|+|.. |-|..+..
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~---~ngN---wMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP---SNGN---WMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeeeecC---CCCc---eEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCC
Confidence 3455667877644 5677899999999887654 2232 999999999999999955 999998864 44665443
No 168
>KOG2253|consensus
Probab=92.58 E-value=0.071 Score=55.22 Aligned_cols=73 Identities=19% Similarity=0.170 Sum_probs=63.4
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy4080 174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRV 253 (403)
Q Consensus 174 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V 253 (403)
...++.-+|||+||...+..+-++.+...+|.|.++..+. |||..|..+..+..|+..|....++|..+.+
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~ 105 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIE 105 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhc
Confidence 3445678999999999999999999999999998776543 9999999999999999999999999988777
Q ss_pred Ee
Q psy4080 254 DF 255 (403)
Q Consensus 254 ~~ 255 (403)
..
T Consensus 106 ~~ 107 (668)
T KOG2253|consen 106 NV 107 (668)
T ss_pred cc
Confidence 65
No 169
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=91.88 E-value=0.45 Score=42.46 Aligned_cols=62 Identities=24% Similarity=0.393 Sum_probs=45.4
Q ss_pred cHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhC--CceeCCeEEEEEeccCC
Q psy4080 192 TEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACT--GMEIDGRQIRVDFSVTQ 259 (403)
Q Consensus 192 te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~--g~~l~g~~i~V~~a~~~ 259 (403)
..+.|+++|..|+.+........- +=..|.|.+.+.|..|...|+ +..+.|..++|.++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 347899999999998887666532 267899999999999999999 89999999999988543
No 170
>KOG1847|consensus
Probab=91.60 E-value=0.11 Score=53.55 Aligned_cols=9 Identities=67% Similarity=0.708 Sum_probs=4.1
Q ss_pred CCCCCCCCC
Q psy4080 72 ITRSRSGSP 80 (403)
Q Consensus 72 rsrsRsrs~ 80 (403)
++|+||+||
T Consensus 748 r~rsRsrSp 756 (878)
T KOG1847|consen 748 RGRSRSRSP 756 (878)
T ss_pred ccccccCCc
Confidence 344444444
No 171
>KOG4209|consensus
Probab=91.14 E-value=0.22 Score=46.19 Aligned_cols=55 Identities=13% Similarity=0.039 Sum_probs=45.6
Q ss_pred cCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 277 QLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 277 ~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
......++|+|+....+... +..+|..|+.|..+.++++..++.+++|+||+|..
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~---~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~ 152 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTK---IELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSS 152 (231)
T ss_pred ccCCceEEEeccccccccch---hhheeeccCCccceeeeccccCCCcceeEEEeccc
Confidence 44567899999988865555 77778888888888999999998999999999964
No 172
>KOG4661|consensus
Probab=91.00 E-value=0.24 Score=50.45 Aligned_cols=56 Identities=21% Similarity=0.184 Sum_probs=45.4
Q ss_pred CceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecccccc
Q psy4080 280 NTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSGGMEN 338 (403)
Q Consensus 280 ~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~a~e~ 338 (403)
...++|.+|..++-..+|+.||..|| .|++..+|++.-+...+-|+||+.+.+.++
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyG---KVvGAKVVTNaRsPGaRCYGfVTMSts~eA 460 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYG---KVVGAKVVTNARSPGARCYGFVTMSTSAEA 460 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhc---ceeceeeeecCCCCCcceeEEEEecchHHH
Confidence 36789999988877778777766555 777889999888888888999999887665
No 173
>KOG0132|consensus
Probab=90.59 E-value=0.37 Score=50.96 Aligned_cols=47 Identities=13% Similarity=0.138 Sum_probs=35.3
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeec
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFS 333 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~ 333 (403)
.-.++||||.|+..+++.+|..+|+.||++..| .++- +++.|||...
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi---~li~------~R~cAfI~M~ 465 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSI---ILIP------PRGCAFIKMV 465 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeE---eecc------CCceeEEEEe
Confidence 345889999999999999988888888866544 4442 5667777653
No 174
>KOG1847|consensus
Probab=90.51 E-value=0.4 Score=49.64 Aligned_cols=12 Identities=0% Similarity=-0.230 Sum_probs=5.5
Q ss_pred EEEcCCCCCCcH
Q psy4080 182 LGVFGLSIYTTE 193 (403)
Q Consensus 182 l~V~nLp~~~te 193 (403)
-|.-|-|..++.
T Consensus 848 ~~~q~~~~qvs~ 859 (878)
T KOG1847|consen 848 PYLQNEPSQVSD 859 (878)
T ss_pred cccccchhhhHH
Confidence 344444444443
No 175
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=90.47 E-value=0.56 Score=37.26 Aligned_cols=53 Identities=6% Similarity=-0.220 Sum_probs=44.1
Q ss_pred ceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 281 TQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 281 ~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
+++.+.|||+..+...+.++.+..- .+..--+-++.|-.+..+.|+|||.|..
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~-~g~yDF~YLPiDf~~~~N~GYAFVNf~~ 54 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHF-KGKYDFFYLPIDFKNKCNLGYAFVNFTS 54 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhc-cCcceEEEeeeeccCCCceEEEEEEcCC
Confidence 5789999999999988888877652 3555678899999999999999999964
No 176
>KOG2591|consensus
Probab=90.30 E-value=0.48 Score=48.33 Aligned_cols=71 Identities=17% Similarity=0.155 Sum_probs=54.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhc--CCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCC--ceeCCeEE
Q psy4080 176 PQPSRCLGVFGLSIYTTEQQINHIFSK--YGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTG--MEIDGRQI 251 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~~te~~L~~~F~~--~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g--~~l~g~~i 251 (403)
...-|.|++.-||.++-+|+++.+|.. +-.+.+|.+..+. -=||+|++..||+.|.+.|.. .+|.|++|
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 345678889999999999999999975 6678888875542 348999999999999877643 33667665
Q ss_pred EE
Q psy4080 252 RV 253 (403)
Q Consensus 252 ~V 253 (403)
..
T Consensus 245 mA 246 (684)
T KOG2591|consen 245 MA 246 (684)
T ss_pred hh
Confidence 43
No 177
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=89.62 E-value=0.31 Score=34.03 Aligned_cols=30 Identities=10% Similarity=0.238 Sum_probs=20.5
Q ss_pred HHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 300 FEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 300 l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
|++.|.++|+|..+.+.... .+++||+|..
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~ 30 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFAS 30 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESS
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECC
Confidence 45666677777777776432 6899999974
No 178
>KOG0804|consensus
Probab=89.41 E-value=1.1 Score=44.66 Aligned_cols=68 Identities=16% Similarity=0.342 Sum_probs=58.1
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCC-CeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC
Q psy4080 179 SRCLGVFGLSIYTTEQQINHIFSKYG-PVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDG 248 (403)
Q Consensus 179 ~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g 248 (403)
+..|+|-.+|..+|--||..|...+- .|.+++|++|..-+ +=.+.|.|.+.++|....+.+||..++.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pn--rymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPN--RYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCc--eEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 78999999999999999999988764 68999999964332 3378899999999999999999998753
No 179
>KOG0116|consensus
Probab=89.34 E-value=0.46 Score=47.76 Aligned_cols=54 Identities=9% Similarity=-0.021 Sum_probs=37.3
Q ss_pred ceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeeccccc
Q psy4080 281 TQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSGGME 337 (403)
Q Consensus 281 ~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~a~e 337 (403)
..|||.|||...+...++++|..||.|...-. .... ...... -|+||+|..+.+
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I-~vr~-~~~~~~-~fgFV~f~~~~~ 342 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGI-QVRS-PGGKNP-CFGFVEFENAAA 342 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccce-EEec-cCCCcC-ceEEEEEeecch
Confidence 45999999999988888888888887765532 2221 123333 789999976543
No 180
>KOG4454|consensus
Probab=89.05 E-value=0.19 Score=45.32 Aligned_cols=52 Identities=13% Similarity=0.083 Sum_probs=36.9
Q ss_pred cCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeec
Q psy4080 277 QLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFS 333 (403)
Q Consensus 277 ~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~ 333 (403)
...+.+|+|+|+...++++. |+|+|=.-|.|..|.|+.+ ..+..+ |+||.|.
T Consensus 6 ae~drtl~v~n~~~~v~eel---L~ElfiqaGPV~kv~ip~~-~d~~~k-Fa~v~f~ 57 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEEL---LSELFIQAGPVYKVGIPSG-QDQEQK-FAYVFFP 57 (267)
T ss_pred cchhhHHHHHhhhhhhhHHH---HHHHhhccCceEEEeCCCC-ccCCCc-eeeeecc
Confidence 34568899999976655555 6666666677777888866 444455 8999985
No 181
>KOG2193|consensus
Probab=88.62 E-value=0.036 Score=54.36 Aligned_cols=112 Identities=16% Similarity=0.222 Sum_probs=78.6
Q ss_pred CCCceeeeechhhHHHHHHHHHhHhhhhCC-------CCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEE-ee
Q psy4080 143 GGRGKIIIAVVTEVEEEAEATAMVEEFADG-------RENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVV-ID 214 (403)
Q Consensus 143 ~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~-~d 214 (403)
.|+.|+.......+.++.+......+.... ......++++-|.|+|+...++.|..++.+||.++.|..+ .+
T Consensus 37 ~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~ 116 (584)
T KOG2193|consen 37 SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTD 116 (584)
T ss_pred cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccc
Confidence 345566555555555554443322222111 1223346789999999999999999999999999998653 33
Q ss_pred CCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q psy4080 215 AKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVT 258 (403)
Q Consensus 215 ~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~~ 258 (403)
..|- ..-|+|.+.+.+..||..|+|..+....++|.|.-.
T Consensus 117 ~eta----vvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 117 SETA----VVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPD 156 (584)
T ss_pred hHHH----HHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCch
Confidence 3322 445889999999999999999999999999987543
No 182
>KOG0533|consensus
Probab=88.50 E-value=1.3 Score=41.31 Aligned_cols=53 Identities=11% Similarity=0.061 Sum_probs=40.7
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....+++|.||+..+.+.++++||+.|+ .++.+.+.. ...+.+.|.|-|.|..
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~---~~~r~~vhy-~~~G~s~Gta~v~~~r 133 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFG---ELKRVAVHY-DRAGRSLGTADVSFNR 133 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhc---cceEEeecc-CCCCCCCccceeeecc
Confidence 3446799999999999999888888887 455555554 4778888888888864
No 183
>KOG0153|consensus
Probab=88.05 E-value=0.62 Score=44.90 Aligned_cols=50 Identities=12% Similarity=0.144 Sum_probs=33.3
Q ss_pred ccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 276 EQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 276 ~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
++..-.++||++|...+++.+ |..+|-++|+|..+.++. .++.|||+|..
T Consensus 224 eD~~I~tLyIg~l~d~v~e~d---IrdhFyqyGeirsi~~~~------~~~CAFv~ftT 273 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQD---IRDHFYQYGEIRSIRILP------RKGCAFVTFTT 273 (377)
T ss_pred cccceeEEEecccccchhHHH---HHHHHhhcCCeeeEEeec------ccccceeeehh
Confidence 344457899999987655555 555666666666666663 24478999964
No 184
>KOG0115|consensus
Probab=88.05 E-value=0.72 Score=42.71 Aligned_cols=76 Identities=22% Similarity=0.217 Sum_probs=55.8
Q ss_pred HHHHHHHHhCCceeCCeEEEEEeccCCCCCCCCCCcCCCCCCcccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEE
Q psy4080 233 DAAAAKDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVG 312 (403)
Q Consensus 233 ~a~~Al~~l~g~~l~g~~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~ 312 (403)
-|+.|..+|++....|+.+.|.||.. ..++|.||..-+..+.+.+-|..|+++..-+
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~----------------------a~l~V~nl~~~~sndll~~~f~~fg~~e~av- 62 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH----------------------AELYVVNLMQGASNDLLEQAFRRFGPIERAV- 62 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc----------------------ceEEEEecchhhhhHHHHHhhhhcCccchhe-
Confidence 45666678899999999999999832 4588999988888888888888888776433
Q ss_pred EEEeeeCCCCCCcceeeeeecc
Q psy4080 313 VGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 313 v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.++ .+.++..+-++|.|+.
T Consensus 63 -~~v--D~r~k~t~eg~v~~~~ 81 (275)
T KOG0115|consen 63 -AKV--DDRGKPTREGIVEFAK 81 (275)
T ss_pred -eee--cccccccccchhhhhc
Confidence 223 2455566667788764
No 185
>KOG0670|consensus
Probab=86.26 E-value=0.8 Score=46.94 Aligned_cols=14 Identities=7% Similarity=0.181 Sum_probs=7.4
Q ss_pred ccchHHHHHHhcCC
Q psy4080 293 HAIKGGKFEEVFGE 306 (403)
Q Consensus 293 ~~~~~~~l~~~Fg~ 306 (403)
-...|.+|...||.
T Consensus 516 LslNLRevLKKyG~ 529 (752)
T KOG0670|consen 516 LSLNLREVLKKYGR 529 (752)
T ss_pred hhchHHHHHHHhCc
Confidence 33455555555554
No 186
>KOG0670|consensus
Probab=85.89 E-value=1.2 Score=45.76 Aligned_cols=6 Identities=0% Similarity=0.108 Sum_probs=2.3
Q ss_pred EEEeee
Q psy4080 313 VGAVTM 318 (403)
Q Consensus 313 v~~~~~ 318 (403)
|.|+..
T Consensus 462 iKIIRn 467 (752)
T KOG0670|consen 462 IKIIRN 467 (752)
T ss_pred EEEeec
Confidence 333333
No 187
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=81.75 E-value=9.9 Score=27.89 Aligned_cols=55 Identities=22% Similarity=0.299 Sum_probs=42.6
Q ss_pred CCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy4080 190 YTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRV 253 (403)
Q Consensus 190 ~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V 253 (403)
.++-++|+..+..|+-. . |..| .| || ||.|.+..+|+++....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~-~--I~~d-~t----Gf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD-R--IRDD-RT----GF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc-e--EEec-CC----EE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 36779999999999643 2 3334 33 34 89999999999999999999888776654
No 188
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=81.31 E-value=1.6 Score=33.96 Aligned_cols=70 Identities=10% Similarity=0.067 Sum_probs=42.0
Q ss_pred EEEEecCHHHHHHHHHHhCCce--eCCeEEEEEeccCCCCCCCCCCcCCCCCCcccCCCceeeeCCCCCccccchHHHH
Q psy4080 224 CFVYFESRDDAAAAKDACTGME--IDGRQIRVDFSVTQRAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEKHAIKGGKF 300 (403)
Q Consensus 224 afV~f~~~~~a~~Al~~l~g~~--l~g~~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~l~~~~~~~~~~~l 300 (403)
|+|+|..+.-|+..++. ..+. +++..+.|....-.......-. ........++.|.+||....++++++.
T Consensus 1 AlITF~e~~VA~~i~~~-~~~~v~l~~~~~~V~v~P~~~~~~~k~q------v~~~vs~rtVlvsgip~~l~ee~l~D~ 72 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKK-KKHPVPLEDCCVRVKVSPVTLGHLQKFQ------VFSGVSKRTVLVSGIPDVLDEEELRDK 72 (88)
T ss_pred CEEEeCcHHHHHHHHhC-CEEEEEECCEEEEEEEEeEecCCceEEE------EEEcccCCEEEEeCCCCCCChhhheee
Confidence 68999999999999853 3333 6777776664321111111111 122345678999999986555554443
No 189
>KOG2146|consensus
Probab=73.41 E-value=19 Score=34.12 Aligned_cols=6 Identities=17% Similarity=1.298 Sum_probs=3.0
Q ss_pred chhhhh
Q psy4080 2 WTIFLK 7 (403)
Q Consensus 2 ~~~~~~ 7 (403)
|.++|-
T Consensus 104 W~LliS 109 (354)
T KOG2146|consen 104 WSLLIS 109 (354)
T ss_pred HHHHHh
Confidence 555553
No 190
>KOG2318|consensus
Probab=72.95 E-value=18 Score=37.47 Aligned_cols=81 Identities=19% Similarity=0.379 Sum_probs=61.2
Q ss_pred CCCCCEEEEcCCCCC-CcHHHHHHHhhcC----CCeEEEEEEeeC----------CCCC-------------c-------
Q psy4080 176 PQPSRCLGVFGLSIY-TTEQQINHIFSKY----GPVERVEVVIDA----------KTGR-------------S------- 220 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~-~te~~L~~~F~~~----G~i~~v~i~~d~----------~tg~-------------~------- 220 (403)
...++.|-|.||.|+ +..++|.-+|..| |.|.+|.|.... .+|. +
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456789999999997 6779999999876 588888875421 1121 0
Q ss_pred -----------------ceEEEEEecCHHHHHHHHHHhCCceeCC--eEEEEEec
Q psy4080 221 -----------------RGFCFVYFESRDDAAAAKDACTGMEIDG--RQIRVDFS 256 (403)
Q Consensus 221 -----------------rG~afV~f~~~~~a~~Al~~l~g~~l~g--~~i~V~~a 256 (403)
.=||.|+|.+.+.|.+..+.++|..+.. ..|-+.|.
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 1289999999999999999999999864 45555553
No 191
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=64.03 E-value=17 Score=34.63 Aligned_cols=83 Identities=13% Similarity=0.221 Sum_probs=59.9
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeC-------CCCCcceEEEEEecCHHHHHH----HHHHhCC
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDA-------KTGRSRGFCFVYFESRDDAAA----AKDACTG 243 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~-------~tg~~rG~afV~f~~~~~a~~----Al~~l~g 243 (403)
....++.|.+.||..+++--.+...|.+||+|++|.++.+. ...+......+.|-+.+.+.. .++.|..
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 34567889999999999988888999999999999999875 112233477889998887663 3333433
Q ss_pred --ceeCCeEEEEEecc
Q psy4080 244 --MEIDGRQIRVDFSV 257 (403)
Q Consensus 244 --~~l~g~~i~V~~a~ 257 (403)
..|.-..|.|.+..
T Consensus 91 fK~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVS 106 (309)
T ss_pred HHHhcCCcceeEEEEE
Confidence 23666777776654
No 192
>KOG4246|consensus
Probab=63.01 E-value=11 Score=40.74 Aligned_cols=8 Identities=13% Similarity=0.032 Sum_probs=3.3
Q ss_pred ccchHHHH
Q psy4080 293 HAIKGGKF 300 (403)
Q Consensus 293 ~~~~~~~l 300 (403)
+.++|...
T Consensus 537 tgiDLS~c 544 (1194)
T KOG4246|consen 537 TGIDLSNC 544 (1194)
T ss_pred cccchhhh
Confidence 33444443
No 193
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=59.18 E-value=12 Score=30.65 Aligned_cols=55 Identities=13% Similarity=0.231 Sum_probs=29.6
Q ss_pred EEEEcCCCCC---------CcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHH-HHHHH
Q psy4080 181 CLGVFGLSIY---------TTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDD-AAAAK 238 (403)
Q Consensus 181 ~l~V~nLp~~---------~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~-a~~Al 238 (403)
++.|-|++.. ++.+.|.+.|..|.++. |..+.++. .+.|++.|+|..--. -..|+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHHH
Confidence 5667777553 35578999999998875 55555533 567899999996443 33444
No 194
>KOG2135|consensus
Probab=58.04 E-value=26 Score=35.50 Aligned_cols=75 Identities=15% Similarity=0.178 Sum_probs=45.0
Q ss_pred CCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccCCCCCCCCCCc
Q psy4080 189 IYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVTQRAHTPTPGI 268 (403)
Q Consensus 189 ~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~~~~~~~~~~~~ 268 (403)
....+.....+|+.+|-++...+..... |+-.|.+. +.|.++|..++...|... |.+-++.+.+........
T Consensus 207 ks~~s~~r~k~fee~g~~~r~el~p~~h-----g~~~vv~~--enan~~m~s~da~ei~~~-l~~~~ynptk~~~~~~~~ 278 (526)
T KOG2135|consen 207 KSRNSENRRKFFEEFGVLERGELCPTHH-----GCVPVVSK--ENANKTMKSEDAAEIMKT-LPPPGYNPTKPKDEVKAA 278 (526)
T ss_pred cccccHHhhhhhHhhceeeecccccccc-----ccceeEee--ccccccccCCcchhhhhc-CCCCCcCCCCCCCCcccc
Confidence 3456677888999999887666654322 35556665 777777776666665544 555555444433333333
Q ss_pred CCC
Q psy4080 269 YMG 271 (403)
Q Consensus 269 ~~~ 271 (403)
+.|
T Consensus 279 fag 281 (526)
T KOG2135|consen 279 FAG 281 (526)
T ss_pred Ccc
Confidence 333
No 195
>KOG1995|consensus
Probab=57.68 E-value=7.2 Score=37.96 Aligned_cols=54 Identities=7% Similarity=0.006 Sum_probs=41.3
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEE--------EEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVV--------GVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~--------~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....++||-+|+..++ +..||+.|.+|+.|. -|.+-++.+|..+|+-|.|.|+.
T Consensus 64 s~~~ti~v~g~~d~~~---~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D 125 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVC---ENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYED 125 (351)
T ss_pred cccccceeeccCccch---HHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecC
Confidence 3446789999977754 455788888887775 56777888999999999888864
No 196
>PF02956 TT_ORF1: TT viral orf 1; InterPro: IPR004219 Torque teno virus, isolated initially from a Japanese patient with hepatitis of unknown aetiology, has since been found to infect both healthy and diseased individuals and numerous prevalence studies have raised questions about its role in unexplained hepatitis. ORF1 is a large 750 residue protein.
Probab=55.31 E-value=12 Score=39.08 Aligned_cols=6 Identities=17% Similarity=0.008 Sum_probs=2.4
Q ss_pred HHHHHH
Q psy4080 194 QQINHI 199 (403)
Q Consensus 194 ~~L~~~ 199 (403)
+.|.+.
T Consensus 119 ~~Ly~e 124 (525)
T PF02956_consen 119 QYLYDE 124 (525)
T ss_pred HHHHHH
Confidence 444433
No 197
>KOG4849|consensus
Probab=54.80 E-value=5.5 Score=38.55 Aligned_cols=53 Identities=13% Similarity=-0.001 Sum_probs=40.3
Q ss_pred CceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeec
Q psy4080 280 NTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFS 333 (403)
Q Consensus 280 ~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~ 333 (403)
....|||||.+.+|+++|-+.....| +.++..+.|..+...+++|||+.|...
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G-~~~~~dmKFFENR~NGQSKG~AL~~~~ 132 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTG-LAQFADMKFFENRTNGQSKGYALLVLN 132 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhh-HHHHhhhhhhhcccCCcccceEEEEec
Confidence 45689999998888888766666655 235556667777889999999998774
No 198
>KOG4483|consensus
Probab=54.78 E-value=27 Score=34.69 Aligned_cols=55 Identities=18% Similarity=0.209 Sum_probs=46.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCC-eEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHH
Q psy4080 178 PSRCLGVFGLSIYTTEQQINHIFSKYGP-VERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKD 239 (403)
Q Consensus 178 ~~~~l~V~nLp~~~te~~L~~~F~~~G~-i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~ 239 (403)
-.+.|=|-++|.....+||...|+.|+. --+|+++-|. .||..|.+...|..||.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALT 445 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhh
Confidence 4678999999999999999999999964 4566676653 89999999999999993
No 199
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=53.12 E-value=27 Score=25.70 Aligned_cols=62 Identities=16% Similarity=0.305 Sum_probs=45.2
Q ss_pred HHHHHHhhcCC-CeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q psy4080 194 QQINHIFSKYG-PVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVT 258 (403)
Q Consensus 194 ~~L~~~F~~~G-~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~~ 258 (403)
++|.+.|...| +|..|.-+..+.++..--.-||+.....+... .++=..|.+..|+|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCC
Confidence 56778888888 68888877777677777788999887665333 3355678899999987543
No 200
>KOG3152|consensus
Probab=48.75 E-value=15 Score=34.19 Aligned_cols=33 Identities=12% Similarity=0.177 Sum_probs=29.0
Q ss_pred CCceeeeCCCCCccccchHHHHHHhcCCcceEE
Q psy4080 279 NNTQSELGSLLSEKHAIKGGKFEEVFGEIATVV 311 (403)
Q Consensus 279 ~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~ 311 (403)
....+|+++||+......+++|+..||++|.|-
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvy 105 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVY 105 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEE
Confidence 346799999999999999999999999999764
No 201
>KOG1855|consensus
Probab=48.31 E-value=12 Score=37.31 Aligned_cols=40 Identities=13% Similarity=0.257 Sum_probs=29.7
Q ss_pred ccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeee
Q psy4080 276 EQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTM 318 (403)
Q Consensus 276 ~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~ 318 (403)
+.+...+|.+-|||..... +.|.++||.+|.|+.|+|..-
T Consensus 227 eel~srtivaenLP~Dh~~---enl~kiFg~~G~IksIRIckP 266 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSY---ENLSKIFGTVGSIKSIRICKP 266 (484)
T ss_pred cccccceEEEecCCcchHH---HHHHHHhhcccceeeeeecCC
Confidence 3356788999999887555 557777888888888888754
No 202
>KOG2295|consensus
Probab=45.74 E-value=3.2 Score=42.55 Aligned_cols=71 Identities=13% Similarity=0.045 Sum_probs=53.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC
Q psy4080 177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEID 247 (403)
Q Consensus 177 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~ 247 (403)
...++|||.|++++++-++|..+...+--+..+-+-.+.......-++.|+|.-.-....|+.+||+..+.
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 45689999999999999999999998866666555433223334457889999777777777788887664
No 203
>KOG2891|consensus
Probab=45.37 E-value=29 Score=32.67 Aligned_cols=37 Identities=16% Similarity=0.466 Sum_probs=29.5
Q ss_pred CCCCEEEEcCCCCC------------CcHHHHHHHhhcCCCeEEEEEEe
Q psy4080 177 QPSRCLGVFGLSIY------------TTEQQINHIFSKYGPVERVEVVI 213 (403)
Q Consensus 177 ~~~~~l~V~nLp~~------------~te~~L~~~F~~~G~i~~v~i~~ 213 (403)
....|||+.+||.. -+|+-|...|+.||.|..|.|+.
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 34568999999864 35778999999999999988753
No 204
>KOG4019|consensus
Probab=44.94 E-value=18 Score=32.00 Aligned_cols=76 Identities=11% Similarity=0.153 Sum_probs=53.3
Q ss_pred CCEEEEcCCCCCCcH-----HHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCe-EEE
Q psy4080 179 SRCLGVFGLSIYTTE-----QQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGR-QIR 252 (403)
Q Consensus 179 ~~~l~V~nLp~~~te-----~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~-~i~ 252 (403)
..++++.+|+..+-. .....+|.+|.+....++++ +.++.-|.|.+++.|..|...++...+.|. .++
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 356778888766432 23455676666655444443 234667899999999999999999999888 788
Q ss_pred EEeccCCC
Q psy4080 253 VDFSVTQR 260 (403)
Q Consensus 253 V~~a~~~~ 260 (403)
.-++....
T Consensus 84 ~yfaQ~~~ 91 (193)
T KOG4019|consen 84 LYFAQPGH 91 (193)
T ss_pred EEEccCCC
Confidence 77776543
No 205
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=44.87 E-value=37 Score=25.09 Aligned_cols=61 Identities=15% Similarity=0.226 Sum_probs=43.8
Q ss_pred HHHHHHhhcCC-CeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy4080 194 QQINHIFSKYG-PVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSV 257 (403)
Q Consensus 194 ~~L~~~F~~~G-~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~ 257 (403)
++|.+.|...| ++..|.-+..+.++.+--.-||+.....+... .|+=..|.|+.|.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46788888888 68888888777777776788888876543333 334556788999888653
No 206
>KOG4365|consensus
Probab=40.55 E-value=4.6 Score=40.27 Aligned_cols=77 Identities=6% Similarity=-0.176 Sum_probs=60.3
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy4080 180 RCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSV 257 (403)
Q Consensus 180 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~ 257 (403)
...|+..||...++.+|.-+|+.||.|..+.+......+..+-.+||+-.+ .+|..+|..+.-..+.|..++|.++.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 346778899999999999999999999998887665556666688888765 45677777766777788888877664
No 207
>KOG4008|consensus
Probab=39.18 E-value=18 Score=33.31 Aligned_cols=36 Identities=22% Similarity=0.504 Sum_probs=30.2
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEE
Q psy4080 174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERV 209 (403)
Q Consensus 174 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v 209 (403)
.......+||+-|||..+|++.|..+.+++|.+..+
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 445567889999999999999999999999865444
No 208
>KOG1295|consensus
Probab=38.23 E-value=41 Score=33.21 Aligned_cols=69 Identities=13% Similarity=0.114 Sum_probs=48.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCC-eEEEEEEeeCC--CCCcceEEEEEecCHHHHHHHHHHhCCcee
Q psy4080 178 PSRCLGVFGLSIYTTEQQINHIFSKYGP-VERVEVVIDAK--TGRSRGFCFVYFESRDDAAAAKDACTGMEI 246 (403)
Q Consensus 178 ~~~~l~V~nLp~~~te~~L~~~F~~~G~-i~~v~i~~d~~--tg~~rG~afV~f~~~~~a~~Al~~l~g~~l 246 (403)
.-..|.|.+||+.+++.+|.+-...+-+ +.......... -..-.+.|||.|..+++...-...++|+++
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 3468999999999999999887776532 22223321110 012256899999999998888888888774
No 209
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=37.35 E-value=1.5e+02 Score=29.72 Aligned_cols=41 Identities=22% Similarity=0.444 Sum_probs=30.9
Q ss_pred CCCCCCCCCEEEEcCCCCC-CcHHHHHHHhhcC----CCeEEEEEE
Q psy4080 172 GRENPQPSRCLGVFGLSIY-TTEQQINHIFSKY----GPVERVEVV 212 (403)
Q Consensus 172 ~~~~~~~~~~l~V~nLp~~-~te~~L~~~F~~~----G~i~~v~i~ 212 (403)
.++...+++.|-|-||.|+ +...+|..+|+.| |.|..|.|.
T Consensus 139 ~pe~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iy 184 (622)
T COG5638 139 VPEEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIY 184 (622)
T ss_pred ccCCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEec
Confidence 4445667889999999987 6678999888865 567766654
No 210
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=30.77 E-value=1.7e+02 Score=22.54 Aligned_cols=56 Identities=21% Similarity=0.288 Sum_probs=40.6
Q ss_pred EEEcCCCCCCcHHHHHHHhhc-CC-CeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHH
Q psy4080 182 LGVFGLSIYTTEQQINHIFSK-YG-PVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDA 240 (403)
Q Consensus 182 l~V~nLp~~~te~~L~~~F~~-~G-~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~ 240 (403)
-|+--++..++..+|++.++. || .|..|..+.-+. + .-=|||++.....|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~-~--~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK-G--EKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-C--cEEEEEEeCCCCcHHHHHHh
Confidence 455557889999999999887 55 577777665432 2 22699999988888776544
No 211
>KOG3869|consensus
Probab=29.61 E-value=54 Score=32.76 Aligned_cols=11 Identities=9% Similarity=0.039 Sum_probs=5.2
Q ss_pred CcHHHHHHHhh
Q psy4080 191 TTEQQINHIFS 201 (403)
Q Consensus 191 ~te~~L~~~F~ 201 (403)
++++++..-+.
T Consensus 361 LSe~E~~arl~ 371 (450)
T KOG3869|consen 361 LSEAERAARLR 371 (450)
T ss_pred ccHHHHHHHHH
Confidence 45555544443
No 212
>KOG2314|consensus
Probab=28.46 E-value=72 Score=33.25 Aligned_cols=54 Identities=7% Similarity=0.022 Sum_probs=35.5
Q ss_pred CceeeeCCCCCccccchHH----HHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeeccc
Q psy4080 280 NTQSELGSLLSEKHAIKGG----KFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSGG 335 (403)
Q Consensus 280 ~~~~~vg~l~~~~~~~~~~----~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~a 335 (403)
+..++|.|+|.... ..++ -|-+.|.++|.|+.+.++.+. .++.+|+.|++|+..
T Consensus 58 D~vVvv~g~PvV~~-~rl~klk~vl~kvfsk~gk~vn~~~P~~e-~ggtkG~lf~E~~~~ 115 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGP-ARLEKLKKVLTKVFSKAGKIVNMYYPIDE-EGGTKGYLFVEYASM 115 (698)
T ss_pred ceEEEECCCcccCh-hHHHHHHHHHHHHHHhhccccceeeccCc-cCCeeeEEEEEecCh
Confidence 45566667665321 1222 234467777888888899774 455999999999753
No 213
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=28.20 E-value=25 Score=34.93 Aligned_cols=59 Identities=19% Similarity=0.167 Sum_probs=47.2
Q ss_pred CEEEEcCCCCCCcH--------HHHHHHhhc--CCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHH
Q psy4080 180 RCLGVFGLSIYTTE--------QQINHIFSK--YGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAK 238 (403)
Q Consensus 180 ~~l~V~nLp~~~te--------~~L~~~F~~--~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al 238 (403)
+.+|+.+.....+. +++...|.. .+++..|.+-++.....++|..|++|.....|++++
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 45666666555443 489999998 678888888888767788999999999999999987
No 214
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=28.00 E-value=2.2e+02 Score=21.53 Aligned_cols=57 Identities=19% Similarity=0.246 Sum_probs=40.5
Q ss_pred EEEEcCCCCCCcHHHHHHHhhc-CC-CeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHH
Q psy4080 181 CLGVFGLSIYTTEQQINHIFSK-YG-PVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDA 240 (403)
Q Consensus 181 ~l~V~nLp~~~te~~L~~~F~~-~G-~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~ 240 (403)
.-|+-.++..++..+|++.++. || .|..|..+.-+. + .-=|||++...+.|...-..
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~-~--~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR-G--EKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-C--ceEEEEEECCCCcHHHHHHh
Confidence 3566668899999999998887 55 577776665432 2 22699999888877765433
No 215
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=27.99 E-value=1.3e+02 Score=21.72 Aligned_cols=19 Identities=26% Similarity=0.461 Sum_probs=15.6
Q ss_pred HHHHHHhhcCCCeEEEEEE
Q psy4080 194 QQINHIFSKYGPVERVEVV 212 (403)
Q Consensus 194 ~~L~~~F~~~G~i~~v~i~ 212 (403)
++|+++|+..|+|.-+.+-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 6899999999999766553
No 216
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=26.95 E-value=52 Score=27.67 Aligned_cols=68 Identities=13% Similarity=0.079 Sum_probs=42.3
Q ss_pred EEEEcCCC--CCCcHHHHHHHhhc----CCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 181 CLGVFGLS--IYTTEQQINHIFSK----YGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 181 ~l~V~nLp--~~~te~~L~~~F~~----~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
...||.+. ..++-..|...+.. .|.+.-..+- .++..+.|.+.+++.++++. ....+++..|.+.
T Consensus 17 ~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l~--------~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~ 87 (153)
T PF14111_consen 17 LCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDLG--------DNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQ 87 (153)
T ss_pred eEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEeC--------CCeEEEEEEeccceeEEEec-ccccccccchhhh
Confidence 45556552 23555556555543 3433322221 24899999999999999953 5566788777776
Q ss_pred ecc
Q psy4080 255 FSV 257 (403)
Q Consensus 255 ~a~ 257 (403)
.-.
T Consensus 88 ~W~ 90 (153)
T PF14111_consen 88 RWS 90 (153)
T ss_pred hhc
Confidence 554
No 217
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=25.66 E-value=1.3e+02 Score=23.27 Aligned_cols=48 Identities=21% Similarity=0.134 Sum_probs=29.8
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEec
Q psy4080 179 SRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFE 229 (403)
Q Consensus 179 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~ 229 (403)
..-|||||++..+-|.-...+.+..++-.-+.+..+ ....||+|-++-
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~---~neqG~~~~t~G 72 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSD---NNEQGFDFRTLG 72 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEcc---CCCCCEEEEEeC
Confidence 456999999988776555555554444333333332 226789998874
No 218
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=25.54 E-value=71 Score=30.83 Aligned_cols=31 Identities=26% Similarity=0.245 Sum_probs=22.7
Q ss_pred EEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy4080 224 CFVYFESRDDAAAAKDACTGMEIDGRQIRVDFS 256 (403)
Q Consensus 224 afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a 256 (403)
|||+|++..+|+.|++.+.... ...+.|..|
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~A 31 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPA 31 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeC
Confidence 7999999999999998544333 344566655
No 219
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=25.16 E-value=2.4e+02 Score=19.47 Aligned_cols=54 Identities=17% Similarity=0.250 Sum_probs=40.2
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCH----HHHHHHHHH
Q psy4080 181 CLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESR----DDAAAAKDA 240 (403)
Q Consensus 181 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~----~~a~~Al~~ 240 (403)
|+.|.||.-.--...|.+.+...-.|.++.+-... +-+-|+|... ++..++|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~------~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET------KTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC------CEEEEEEecCCCCHHHHHHHHHH
Confidence 57788888777788999999998889888875442 2778888744 566666655
No 220
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=22.47 E-value=3.2e+02 Score=21.40 Aligned_cols=59 Identities=7% Similarity=0.034 Sum_probs=35.6
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhc-------C-CCeEEEEEEee-----CCCCCcce-EEEEEecCHHHHHHHHHH
Q psy4080 180 RCLGVFGLSIYTTEQQINHIFSK-------Y-GPVERVEVVID-----AKTGRSRG-FCFVYFESRDDAAAAKDA 240 (403)
Q Consensus 180 ~~l~V~nLp~~~te~~L~~~F~~-------~-G~i~~v~i~~d-----~~tg~~rG-~afV~f~~~~~a~~Al~~ 240 (403)
-++|| |.++++++++.++.+. . |.|..+.-.-. +-.+..+| |.++.|....++.+.++.
T Consensus 9 E~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler 81 (97)
T CHL00123 9 ETMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEK 81 (97)
T ss_pred eEEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHH
Confidence 35666 5677888777665543 3 46666542111 12344556 678889877777777753
No 221
>KOG4213|consensus
Probab=22.08 E-value=1.1e+02 Score=27.15 Aligned_cols=55 Identities=20% Similarity=0.209 Sum_probs=35.8
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcC-CCeEEEEEEeeCCCC--CcceEEEEEecCHHHHHHHHHH
Q psy4080 180 RCLGVFGLSIYTTEQQINHIFSKY-GPVERVEVVIDAKTG--RSRGFCFVYFESRDDAAAAKDA 240 (403)
Q Consensus 180 ~~l~V~nLp~~~te~~L~~~F~~~-G~i~~v~i~~d~~tg--~~rG~afV~f~~~~~a~~Al~~ 240 (403)
+++|.. .|+++|..+..-. |.+..|.+-.. ..+ ..+|-.||+|.+.+.|.+.++.
T Consensus 112 r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~-~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 112 RTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRH-GNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred hhhhcc-----CCHHHHHHHHHHhcccceEeecccc-CCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 455554 4555554443221 67888776543 223 4678999999999999998754
No 222
>KOG2416|consensus
Probab=21.40 E-value=83 Score=33.03 Aligned_cols=49 Identities=14% Similarity=0.132 Sum_probs=30.6
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcC-CcceEEEEEEeeeCCCCCCcceeeeeeccc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFG-EIATVVGVGAVTMTEMSGNGRISPLQFSGG 335 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg-~~g~v~~v~~~~~~~~~~~~g~~fv~f~~a 335 (403)
...+.|+|.||... .++.+|.+++| +.+.|+.+ .....+--|||.|...
T Consensus 442 ~~SnvlhI~nLvRP---FTlgQLkelL~rtgg~Vee~------WmDkIKShCyV~yss~ 491 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRP---FTLGQLKELLGRTGGNVEEF------WMDKIKSHCYVSYSSV 491 (718)
T ss_pred CccceEeeeccccc---chHHHHHHHHhhccCchHHH------HHHHhhcceeEecccH
Confidence 34567888888666 55666777777 34444332 3444566689999753
No 223
>PRK11901 hypothetical protein; Reviewed
Probab=20.74 E-value=2e+02 Score=28.02 Aligned_cols=54 Identities=13% Similarity=0.163 Sum_probs=37.5
Q ss_pred CCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEE--EEecCHHHHHHHHHHhCCce
Q psy4080 190 YTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCF--VYFESRDDAAAAKDACTGME 245 (403)
Q Consensus 190 ~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~af--V~f~~~~~a~~Al~~l~g~~ 245 (403)
...++.|..|..+++ +..+++..-...|+.. |.. =.|.+.++|..|+..|....
T Consensus 253 as~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa~l 308 (327)
T PRK11901 253 ASRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPAEV 308 (327)
T ss_pred CCCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCHHH
Confidence 356788888888775 4556666655555543 443 36899999999999886544
No 224
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=20.31 E-value=55 Score=25.45 Aligned_cols=24 Identities=17% Similarity=0.237 Sum_probs=20.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhh
Q psy4080 178 PSRCLGVFGLSIYTTEQQINHIFS 201 (403)
Q Consensus 178 ~~~~l~V~nLp~~~te~~L~~~F~ 201 (403)
..++|.|.|||..+.|++|++.++
T Consensus 51 s~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 51 SKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cCCEEEEeCCCCCCChhhheeeEE
Confidence 468999999999999999998764
Done!