Query psy4080
Match_columns 403
No_of_seqs 457 out of 3120
Neff 8.2
Searched_HMMs 29240
Date Sat Aug 17 00:49:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4080.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4080hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3k_A Heterogeneous nuclear r 99.9 2.6E-25 8.8E-30 199.1 16.6 148 174-334 8-155 (196)
2 4f02_A Polyadenylate-binding p 99.9 2.1E-25 7E-30 203.5 16.0 141 176-334 12-152 (213)
3 1fxl_A Paraneoplastic encephal 99.9 1E-24 3.6E-29 189.6 17.5 138 179-334 2-139 (167)
4 1b7f_A Protein (SXL-lethal pro 99.9 8.1E-25 2.8E-29 190.8 16.8 139 178-334 2-140 (168)
5 3md3_A Nuclear and cytoplasmic 99.9 2.3E-24 8E-29 187.2 15.7 138 180-334 1-138 (166)
6 3nmr_A Cugbp ELAV-like family 99.9 1.2E-23 4.2E-28 184.4 15.9 139 178-334 2-145 (175)
7 2qfj_A FBP-interacting repress 99.9 2E-24 6.9E-29 196.2 9.7 149 179-334 28-176 (216)
8 2cjk_A Nuclear polyadenylated 99.9 3.2E-24 1.1E-28 186.9 10.1 137 178-334 2-138 (167)
9 3smz_A Protein raver-1, ribonu 99.9 3.2E-23 1.1E-27 196.8 16.4 177 142-334 56-235 (284)
10 3tyt_A Heterogeneous nuclear r 99.9 1.3E-22 4.4E-27 184.0 18.0 150 177-334 2-174 (205)
11 2ghp_A U4/U6 snRNA-associated 99.9 2.4E-23 8.3E-28 198.4 10.6 180 143-334 81-263 (292)
12 2g4b_A Splicing factor U2AF 65 99.9 6.6E-22 2.3E-26 173.1 14.2 132 178-334 3-145 (172)
13 2yh0_A Splicing factor U2AF 65 99.9 1.3E-21 4.4E-26 175.1 16.1 147 178-334 3-165 (198)
14 3pgw_A U1-A; protein-RNA compl 99.9 1.7E-21 5.9E-26 184.6 17.6 83 175-260 5-91 (282)
15 1fje_B Nucleolin RBD12, protei 99.9 1E-22 3.5E-27 179.0 8.0 137 175-334 9-145 (175)
16 4f25_A Polyadenylate-binding p 99.9 6.1E-22 2.1E-26 162.8 11.8 110 178-296 4-113 (115)
17 3sde_A Paraspeckle component 1 99.9 1.2E-21 4.2E-26 184.0 15.1 129 175-334 18-146 (261)
18 4fxv_A ELAV-like protein 1; RN 99.9 1.4E-21 4.8E-26 156.3 12.2 83 176-258 16-98 (99)
19 2adc_A Polypyrimidine tract-bi 99.9 2.2E-21 7.5E-26 178.7 13.8 148 175-334 30-198 (229)
20 3smz_A Protein raver-1, ribonu 99.9 7E-21 2.4E-25 180.6 16.2 126 178-334 21-146 (284)
21 1qm9_A Polypyrimidine tract-bi 99.8 5.5E-21 1.9E-25 171.5 12.3 143 179-334 3-167 (198)
22 2ghp_A U4/U6 snRNA-associated 99.8 1.3E-20 4.6E-25 179.3 14.3 132 174-334 36-168 (292)
23 3s8s_A Histone-lysine N-methyl 99.8 1.9E-20 6.6E-25 152.6 12.9 84 176-259 3-86 (110)
24 2lxi_A RNA-binding protein 10; 99.8 5.6E-21 1.9E-25 150.4 6.7 83 179-261 1-85 (91)
25 2cq0_A Eukaryotic translation 99.8 7.6E-20 2.6E-24 147.0 13.0 89 175-263 11-99 (103)
26 2kn4_A Immunoglobulin G-bindin 99.8 7.6E-20 2.6E-24 158.5 13.5 120 142-261 12-152 (158)
27 3bs9_A Nucleolysin TIA-1 isofo 99.8 7E-20 2.4E-24 142.3 11.6 83 177-259 4-86 (87)
28 3md1_A Nuclear and cytoplasmic 99.8 1.1E-19 3.9E-24 139.8 12.3 82 179-260 1-82 (83)
29 2lkz_A RNA-binding protein 5; 99.8 2.1E-20 7.1E-25 148.2 8.2 83 176-258 6-94 (95)
30 2dnz_A Probable RNA-binding pr 99.8 1.4E-19 4.8E-24 143.1 12.5 85 177-261 3-87 (95)
31 2dgs_A DAZ-associated protein 99.8 1.5E-19 5.2E-24 144.1 12.7 88 175-263 6-93 (99)
32 1whw_A Hypothetical protein ri 99.8 1.7E-19 5.7E-24 143.8 12.7 87 176-262 5-91 (99)
33 2cpz_A CUG triplet repeat RNA- 99.8 1.3E-19 4.5E-24 148.6 12.4 91 174-264 20-110 (115)
34 2dnm_A SRP46 splicing factor; 99.8 7.9E-20 2.7E-24 146.9 10.5 90 174-263 8-97 (103)
35 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.4E-19 4.6E-24 140.1 11.1 82 176-257 4-85 (85)
36 2dgo_A Cytotoxic granule-assoc 99.8 6.2E-19 2.1E-23 144.5 15.3 89 174-262 10-98 (115)
37 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.2E-19 4E-24 145.6 10.7 89 175-263 8-96 (102)
38 2cqc_A Arginine/serine-rich sp 99.8 2E-19 6.8E-24 142.1 11.9 85 174-258 10-94 (95)
39 1x5u_A Splicing factor 3B subu 99.8 2E-19 6.7E-24 145.0 11.9 88 174-261 10-97 (105)
40 3p5t_L Cleavage and polyadenyl 99.8 2.4E-20 8.3E-25 146.3 6.4 82 180-261 2-85 (90)
41 1x5t_A Splicing factor 3B subu 99.8 1.3E-19 4.5E-24 143.5 10.6 86 177-262 3-89 (96)
42 2cpf_A RNA binding motif prote 99.8 2.2E-19 7.5E-24 142.9 11.9 86 177-262 3-91 (98)
43 1x4h_A RNA-binding protein 28; 99.8 2.9E-19 9.8E-24 145.5 12.7 89 174-262 10-104 (111)
44 2dnh_A Bruno-like 5, RNA bindi 99.8 3.5E-19 1.2E-23 143.5 13.0 88 175-263 11-101 (105)
45 2do4_A Squamous cell carcinoma 99.8 3.5E-19 1.2E-23 142.3 12.9 85 175-260 13-97 (100)
46 2x1f_A MRNA 3'-END-processing 99.8 2.1E-19 7.1E-24 142.6 11.5 83 178-260 1-83 (96)
47 1p27_B RNA-binding protein 8A; 99.8 1.9E-19 6.4E-24 145.4 11.0 86 175-260 19-104 (106)
48 2e5h_A Zinc finger CCHC-type a 99.8 2.4E-19 8.3E-24 141.4 11.1 83 175-257 12-94 (94)
49 1x5s_A Cold-inducible RNA-bind 99.8 1.9E-19 6.4E-24 144.3 10.6 88 175-262 8-95 (102)
50 2cph_A RNA binding motif prote 99.8 3.3E-19 1.1E-23 144.1 11.8 89 174-262 10-100 (107)
51 2d9p_A Polyadenylate-binding p 99.8 4.6E-19 1.6E-23 142.4 12.5 87 175-263 11-97 (103)
52 2dng_A Eukaryotic translation 99.8 5.7E-19 2E-23 141.9 13.0 85 175-261 11-95 (103)
53 2la6_A RNA-binding protein FUS 99.8 3.2E-19 1.1E-23 142.3 11.4 85 173-257 7-99 (99)
54 2div_A TRNA selenocysteine ass 99.8 3.2E-19 1.1E-23 142.1 10.9 86 175-260 5-95 (99)
55 3ns6_A Eukaryotic translation 99.8 8.7E-20 3E-24 146.1 7.4 81 178-258 5-92 (100)
56 1oo0_B CG8781-PA, drosophila Y 99.8 3.7E-19 1.3E-23 144.7 10.9 87 174-260 21-107 (110)
57 2kxn_B Transformer-2 protein h 99.8 2E-19 6.8E-24 150.9 9.4 88 173-260 40-127 (129)
58 2jrs_A RNA-binding protein 39; 99.8 5E-19 1.7E-23 143.7 11.5 86 174-259 21-106 (108)
59 2dgp_A Bruno-like 4, RNA bindi 99.8 3.2E-19 1.1E-23 144.0 10.2 88 174-261 8-98 (106)
60 3ulh_A THO complex subunit 4; 99.8 8.4E-19 2.9E-23 141.8 12.4 82 175-257 25-106 (107)
61 4a8x_A RNA-binding protein wit 99.8 5.5E-19 1.9E-23 137.4 10.9 83 178-260 3-86 (88)
62 2cpe_A RNA-binding protein EWS 99.8 5.8E-19 2E-23 144.2 11.5 87 175-261 11-105 (113)
63 2cqd_A RNA-binding region cont 99.8 1.1E-18 3.9E-23 143.2 13.2 86 175-261 13-98 (116)
64 3s7r_A Heterogeneous nuclear r 99.8 9.2E-19 3.1E-23 136.1 12.0 81 175-256 7-87 (87)
65 2cq3_A RNA-binding protein 9; 99.8 1.8E-18 6.3E-23 138.8 13.9 87 174-262 10-96 (103)
66 1wi8_A EIF-4B, eukaryotic tran 99.8 7.6E-19 2.6E-23 141.4 11.6 86 175-262 11-97 (104)
67 1u6f_A Tcubp1, RNA-binding pro 99.8 1.4E-18 4.7E-23 147.3 13.7 89 175-263 38-126 (139)
68 2dhg_A TRNA selenocysteine ass 99.8 6.2E-19 2.1E-23 141.8 10.7 86 175-261 5-92 (104)
69 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.9E-18 6.5E-23 138.8 13.3 86 174-261 10-95 (103)
70 2fy1_A RNA-binding motif prote 99.8 9.1E-19 3.1E-23 144.0 11.7 85 176-261 4-88 (116)
71 1h2v_Z 20 kDa nuclear CAP bind 99.8 1.6E-18 5.4E-23 150.0 13.7 88 174-261 34-121 (156)
72 2dh8_A DAZ-associated protein 99.8 7E-19 2.4E-23 141.8 10.7 86 175-261 12-97 (105)
73 3ex7_B RNA-binding protein 8A; 99.8 5.5E-19 1.9E-23 147.3 10.2 89 174-262 17-105 (126)
74 2ywk_A Putative RNA-binding pr 99.8 9.1E-19 3.1E-23 138.4 10.7 82 175-257 12-93 (95)
75 3ucg_A Polyadenylate-binding p 99.8 1.1E-18 3.8E-23 136.1 11.0 80 179-259 6-85 (89)
76 2dgx_A KIAA0430 protein; RRM d 99.8 1.3E-18 4.5E-23 138.1 11.3 83 176-261 6-92 (96)
77 2hvz_A Splicing factor, argini 99.8 4.9E-19 1.7E-23 141.7 8.9 100 180-289 1-100 (101)
78 2do0_A HnRNP M, heterogeneous 99.8 5.6E-18 1.9E-22 138.5 15.3 85 175-260 11-95 (114)
79 2cqp_A RNA-binding protein 12; 99.8 6.9E-19 2.4E-23 140.0 9.6 84 176-259 12-95 (98)
80 2khc_A Testis-specific RNP-typ 99.8 7.6E-19 2.6E-23 144.7 9.7 83 175-257 36-118 (118)
81 2rs2_A Musashi-1, RNA-binding 99.8 1.3E-18 4.3E-23 141.5 10.8 87 174-261 20-106 (109)
82 3n9u_C Cleavage and polyadenyl 99.8 1.4E-18 4.9E-23 150.4 11.6 81 178-258 54-136 (156)
83 1sjq_A Polypyrimidine tract-bi 99.8 9.8E-19 3.4E-23 140.5 9.6 82 175-262 12-95 (105)
84 2dgv_A HnRNP M, heterogeneous 99.8 2.4E-18 8.2E-23 135.1 11.7 83 176-260 5-87 (92)
85 1p1t_A Cleavage stimulation fa 99.8 4.3E-19 1.5E-23 142.7 7.5 83 178-260 7-89 (104)
86 2dgw_A Probable RNA-binding pr 99.8 3.4E-18 1.2E-22 134.0 12.5 83 175-260 6-88 (91)
87 3lqv_A PRE-mRNA branch site pr 99.8 7.4E-19 2.5E-23 144.1 9.0 106 175-306 4-109 (115)
88 1s79_A Lupus LA protein; RRM, 99.8 7.1E-19 2.4E-23 141.6 8.7 80 177-258 9-88 (103)
89 2kt5_A RNA and export factor-b 99.8 3.1E-18 1E-22 142.4 12.8 87 176-263 32-118 (124)
90 2ek1_A RNA-binding protein 12; 99.8 6.1E-19 2.1E-23 139.4 8.1 81 177-257 13-93 (95)
91 2cqg_A TDP-43, TAR DNA-binding 99.8 4.9E-18 1.7E-22 136.3 13.4 86 174-261 10-95 (103)
92 1x4e_A RNA binding motif, sing 99.8 2.6E-19 9E-24 138.6 5.5 81 176-256 2-82 (85)
93 1x4a_A Splicing factor, argini 99.8 5.3E-18 1.8E-22 137.6 12.9 85 175-262 18-102 (109)
94 2dis_A Unnamed protein product 99.8 2.5E-18 8.6E-23 139.4 11.0 86 176-261 5-94 (109)
95 1rk8_A CG8781-PA, CG8781-PA pr 99.8 3.5E-18 1.2E-22 149.3 12.2 87 175-261 68-154 (165)
96 2cpi_A CCR4-NOT transcription 99.8 2.7E-18 9.4E-23 140.0 10.7 85 176-260 12-102 (111)
97 2m2b_A RNA-binding protein 10; 99.8 5.7E-19 1.9E-23 148.4 6.5 86 176-262 20-111 (131)
98 2j76_E EIF-4B, EIF4B, eukaryot 99.8 6.3E-19 2.2E-23 141.0 6.4 84 174-259 14-98 (100)
99 2mss_A Protein (musashi1); RNA 99.8 6.3E-19 2.2E-23 133.1 6.1 75 181-256 1-75 (75)
100 2cq1_A PTB-like protein L; RRM 99.8 7.2E-18 2.5E-22 135.1 12.5 82 175-262 11-94 (101)
101 3r27_A HnRNP L, heterogeneous 99.8 3.4E-18 1.1E-22 136.0 10.4 83 172-260 14-98 (100)
102 2jwn_A Embryonic polyadenylate 99.8 5.3E-18 1.8E-22 140.8 11.9 82 179-261 36-117 (124)
103 1x4b_A Heterogeneous nuclear r 99.8 3.7E-18 1.3E-22 140.1 10.8 82 179-261 27-108 (116)
104 3md3_A Nuclear and cytoplasmic 99.8 9.1E-18 3.1E-22 145.3 13.8 116 142-257 40-165 (166)
105 2fc9_A NCL protein; structure 99.7 7.6E-18 2.6E-22 134.7 11.6 83 175-261 11-93 (101)
106 2cq4_A RNA binding motif prote 99.7 2.8E-18 9.7E-23 140.4 9.3 81 179-260 25-105 (114)
107 2f3j_A RNA and export factor b 99.7 1.4E-17 4.7E-22 147.3 14.3 84 175-259 84-167 (177)
108 1uaw_A Mouse-musashi-1; RNP-ty 99.7 9.1E-19 3.1E-23 132.7 5.7 76 180-256 1-76 (77)
109 1x5o_A RNA binding motif, sing 99.7 7.4E-18 2.5E-22 137.8 11.5 82 176-258 22-111 (114)
110 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 5.2E-18 1.8E-22 143.7 10.8 82 175-256 59-140 (140)
111 2wbr_A GW182, gawky, LD47780P; 99.7 5.1E-18 1.7E-22 130.7 9.6 73 178-256 6-78 (89)
112 2dnq_A RNA-binding protein 4B; 99.7 1.1E-17 3.7E-22 130.9 11.8 80 175-262 4-83 (90)
113 2err_A Ataxin-2-binding protei 99.7 4.5E-18 1.5E-22 138.2 9.9 86 172-259 22-107 (109)
114 2nlw_A Eukaryotic translation 99.7 4.6E-18 1.6E-22 137.2 9.8 82 176-259 12-100 (105)
115 1wg5_A Heterogeneous nuclear r 99.7 5.9E-18 2E-22 136.3 10.4 83 176-260 12-95 (104)
116 2ki2_A SS-DNA binding protein 99.7 5.1E-19 1.8E-23 138.4 3.8 81 180-261 2-82 (90)
117 2ad9_A Polypyrimidine tract-bi 99.7 7.2E-18 2.5E-22 138.7 10.8 83 174-262 26-110 (119)
118 2lea_A Serine/arginine-rich sp 99.7 1.5E-18 5.2E-23 146.6 6.9 87 175-261 43-129 (135)
119 1wez_A HnRNP H', FTP-3, hetero 99.7 3.9E-18 1.3E-22 137.0 9.0 83 175-260 11-93 (102)
120 1wex_A Hypothetical protein (r 99.7 9.1E-18 3.1E-22 135.2 11.1 82 175-262 11-94 (104)
121 1x4c_A Splicing factor, argini 99.7 1.2E-17 4.2E-22 135.3 11.7 79 176-261 12-95 (108)
122 2fc8_A NCL protein; structure 99.7 1.5E-17 5E-22 133.2 11.7 84 175-261 11-94 (102)
123 2cpy_A RNA-binding protein 12; 99.7 3.9E-18 1.3E-22 139.7 8.4 83 175-259 11-94 (114)
124 2cpx_A Hypothetical protein FL 99.7 1.9E-18 6.5E-23 141.5 6.3 89 175-263 21-109 (115)
125 2a3j_A U1 small nuclear ribonu 99.7 9.1E-18 3.1E-22 140.1 10.5 84 174-260 24-111 (127)
126 2g4b_A Splicing factor U2AF 65 99.7 1.1E-17 3.9E-22 146.0 11.4 113 143-256 51-171 (172)
127 2qfj_A FBP-interacting repress 99.7 1.3E-17 4.6E-22 151.0 12.0 123 142-264 69-210 (216)
128 2db1_A Heterogeneous nuclear r 99.7 7E-18 2.4E-22 139.1 9.1 82 176-259 14-98 (118)
129 1x4d_A Matrin 3; structural ge 99.7 9.3E-18 3.2E-22 134.5 9.5 80 175-260 11-93 (102)
130 2krb_A Eukaryotic translation 99.7 3.4E-18 1.2E-22 131.2 6.6 73 179-253 1-80 (81)
131 1wel_A RNA-binding protein 12; 99.7 2.7E-18 9.2E-23 142.8 6.5 81 177-258 23-103 (124)
132 1why_A Hypothetical protein ri 99.7 1.6E-17 5.4E-22 131.9 10.6 80 175-260 13-94 (97)
133 2hgl_A HNRPF protein, heteroge 99.7 7.6E-18 2.6E-22 142.2 8.9 82 175-258 40-124 (136)
134 1x4g_A Nucleolysin TIAR; struc 99.7 2.1E-17 7.1E-22 134.2 11.1 81 176-262 22-102 (109)
135 3q2s_C Cleavage and polyadenyl 99.7 8E-18 2.7E-22 154.9 9.2 81 178-258 67-149 (229)
136 2dgt_A RNA-binding protein 30; 99.7 4.2E-17 1.4E-21 128.1 12.1 81 174-262 5-85 (92)
137 2jvr_A Nucleolar protein 3; RN 99.7 8.3E-18 2.8E-22 137.0 8.3 80 176-259 25-105 (111)
138 1nu4_A U1A RNA binding domain; 99.7 8.1E-18 2.8E-22 133.4 7.8 82 176-260 5-90 (97)
139 2ytc_A PRE-mRNA-splicing facto 99.7 2.8E-17 9.5E-22 127.0 10.6 78 174-257 7-85 (85)
140 3pgw_S U1-70K; protein-RNA com 99.7 3.7E-17 1.3E-21 164.1 14.4 88 176-263 99-186 (437)
141 2e5j_A Methenyltetrahydrofolat 99.7 2E-17 6.7E-22 131.4 9.8 81 175-260 15-95 (97)
142 2cpj_A Non-POU domain-containi 99.7 2.3E-17 7.9E-22 131.4 10.3 81 175-261 11-91 (99)
143 2xnq_A Nuclear polyadenylated 99.7 4.1E-17 1.4E-21 129.7 11.5 79 173-259 16-95 (97)
144 1b7f_A Protein (SXL-lethal pro 99.7 4.5E-17 1.5E-21 141.4 12.8 115 142-256 44-168 (168)
145 1fj7_A Nucleolin RBD1, protein 99.7 1.2E-18 4.3E-23 139.3 2.6 84 176-261 14-97 (101)
146 2jvo_A Nucleolar protein 3; nu 99.7 3E-17 1E-21 133.2 10.5 80 174-261 26-105 (108)
147 2dnn_A RNA-binding protein 12; 99.7 1.4E-17 5E-22 135.2 8.5 78 178-258 15-92 (109)
148 2la4_A Nuclear and cytoplasmic 99.7 2E-17 6.9E-22 132.2 9.2 77 176-258 24-100 (101)
149 1iqt_A AUF1, heterogeneous nuc 99.7 3.3E-18 1.1E-22 129.0 4.2 75 181-256 1-75 (75)
150 1l3k_A Heterogeneous nuclear r 99.7 3.3E-17 1.1E-21 146.1 11.4 119 142-261 54-185 (196)
151 2dnp_A RNA-binding protein 14; 99.7 5E-17 1.7E-21 127.1 10.9 79 175-261 5-83 (90)
152 2i2y_A Fusion protein consists 99.7 1.7E-17 5.7E-22 142.6 8.8 112 143-259 13-148 (150)
153 2cpd_A Apobec-1 stimulating pr 99.7 1.2E-16 4.1E-21 127.2 13.1 79 175-261 11-91 (99)
154 2cjk_A Nuclear polyadenylated 99.7 1.5E-17 5E-22 144.6 8.0 117 142-259 44-166 (167)
155 1x4f_A Matrin 3; structural ge 99.7 3.1E-17 1E-21 133.5 9.2 80 176-261 22-104 (112)
156 2e5g_A U6 snRNA-specific termi 99.7 9.5E-17 3.2E-21 126.6 11.7 80 176-261 5-84 (94)
157 1fjc_A Nucleolin RBD2, protein 99.7 2.1E-17 7.2E-22 130.8 7.9 81 175-260 12-92 (96)
158 2cqh_A IGF-II mRNA-binding pro 99.7 3.6E-17 1.2E-21 128.7 9.2 80 176-262 5-86 (93)
159 2yh0_A Splicing factor U2AF 65 99.7 8.2E-17 2.8E-21 143.8 12.6 117 143-260 51-195 (198)
160 2lcw_A RNA-binding protein FUS 99.5 9.7E-19 3.3E-23 143.7 0.0 86 177-262 5-98 (116)
161 1wf1_A RNA-binding protein RAL 99.7 6.6E-17 2.3E-21 131.4 10.6 78 176-261 24-102 (110)
162 2dgu_A Heterogeneous nuclear r 99.7 1.3E-16 4.4E-21 128.1 12.1 80 176-263 8-87 (103)
163 1x5p_A Negative elongation fac 99.7 2.4E-16 8.1E-21 125.1 13.4 82 174-263 10-91 (97)
164 2lmi_A GRSF-1, G-rich sequence 99.7 9.3E-18 3.2E-22 135.9 5.2 82 175-258 7-91 (107)
165 4f02_A Polyadenylate-binding p 99.7 2.4E-17 8.1E-22 149.9 8.5 116 142-259 56-181 (213)
166 2xs2_A Deleted in azoospermia- 99.7 1.6E-17 5.6E-22 133.0 6.6 81 177-260 7-87 (102)
167 2kvi_A Nuclear polyadenylated 99.7 4E-17 1.4E-21 129.4 8.5 78 176-261 7-85 (96)
168 1fxl_A Paraneoplastic encephal 99.7 8E-17 2.7E-21 139.5 11.0 115 142-256 43-167 (167)
169 2j8a_A Histone-lysine N-methyl 99.7 5.5E-17 1.9E-21 133.2 8.6 77 180-256 3-93 (136)
170 3nmr_A Cugbp ELAV-like family 99.7 9.6E-17 3.3E-21 140.2 10.8 114 142-256 46-174 (175)
171 2cq2_A Hypothetical protein LO 99.7 8.9E-17 3.1E-21 130.9 9.5 83 174-262 20-109 (114)
172 3egn_A RNA-binding protein 40; 99.7 4E-17 1.4E-21 139.0 7.4 88 173-260 39-131 (143)
173 1whx_A Hypothetical protein ri 99.7 9.9E-17 3.4E-21 130.7 9.3 77 178-260 9-85 (111)
174 2dha_A FLJ20171 protein; RRM d 99.7 4.9E-17 1.7E-21 134.9 7.4 80 177-258 21-104 (123)
175 2hgn_A Heterogeneous nuclear r 99.7 1.4E-17 4.7E-22 141.1 3.9 82 176-260 43-124 (139)
176 2hgm_A HNRPF protein, heteroge 99.7 6.8E-17 2.3E-21 134.4 7.7 81 175-258 38-120 (126)
177 1wg1_A KIAA1579 protein, homol 99.7 2.4E-16 8.1E-21 122.8 10.2 76 177-259 3-78 (88)
178 1fje_B Nucleolin RBD12, protei 99.7 2.1E-16 7.1E-21 138.5 10.9 112 142-259 53-174 (175)
179 2e44_A Insulin-like growth fac 99.7 1.4E-16 4.9E-21 125.9 8.7 80 176-259 12-92 (96)
180 2diu_A KIAA0430 protein; struc 99.7 3.7E-16 1.3E-20 121.4 10.6 75 177-261 6-86 (96)
181 3beg_B Splicing factor, argini 99.7 1.2E-16 4.2E-21 131.0 6.9 76 177-259 14-94 (115)
182 3d2w_A TAR DNA-binding protein 99.6 4.2E-16 1.4E-20 121.8 9.4 77 175-260 7-85 (89)
183 2dnl_A Cytoplasmic polyadenyla 99.6 4.9E-16 1.7E-20 127.1 10.1 78 176-256 5-85 (114)
184 1sjr_A Polypyrimidine tract-bi 99.6 7.7E-16 2.6E-20 133.0 11.4 82 176-261 43-126 (164)
185 3zzy_A Polypyrimidine tract-bi 99.6 1.5E-15 5.1E-20 126.5 12.6 80 177-261 26-108 (130)
186 2bz2_A Negative elongation fac 99.6 8.3E-16 2.8E-20 127.2 9.4 79 175-261 35-113 (121)
187 2e5i_A Heterogeneous nuclear r 99.6 2.6E-15 8.9E-20 124.3 12.3 76 180-261 26-104 (124)
188 2hzc_A Splicing factor U2AF 65 99.6 7.3E-16 2.5E-20 119.4 8.2 72 177-255 4-86 (87)
189 1wf0_A TDP-43, TAR DNA-binding 99.6 4.6E-16 1.6E-20 121.1 6.6 78 177-261 3-80 (88)
190 2pe8_A Splicing factor 45; RRM 99.6 3E-15 1E-19 120.6 11.4 83 176-258 5-93 (105)
191 2voo_A Lupus LA protein; RNA-b 99.6 8E-15 2.7E-19 131.3 11.4 78 179-258 109-186 (193)
192 3sde_A Paraspeckle component 1 99.6 7.9E-15 2.7E-19 137.4 10.8 117 143-260 58-180 (261)
193 3tyt_A Heterogeneous nuclear r 99.6 1E-14 3.4E-19 131.9 10.8 112 143-256 42-204 (205)
194 3u1l_A PRE-mRNA-splicing facto 99.6 7.4E-15 2.5E-19 135.0 9.1 79 176-260 131-230 (240)
195 2dit_A HIV TAT specific factor 99.5 5.8E-14 2E-18 114.3 12.3 83 175-261 11-104 (112)
196 1qm9_A Polypyrimidine tract-bi 99.5 1.8E-14 6.1E-19 128.9 8.9 77 177-258 118-196 (198)
197 2adc_A Polypyrimidine tract-bi 99.5 3.6E-14 1.2E-18 130.3 11.0 112 143-259 72-228 (229)
198 3pgw_A U1-A; protein-RNA compl 99.5 8.3E-14 2.8E-18 131.5 11.6 78 175-257 203-281 (282)
199 3v4m_A Splicing factor U2AF 65 99.5 1E-13 3.5E-18 111.6 9.0 81 177-257 3-95 (105)
200 1jmt_A Splicing factor U2AF 35 99.5 2.4E-14 8.2E-19 115.1 4.8 72 184-256 20-103 (104)
201 3ue2_A Poly(U)-binding-splicin 99.5 2.4E-13 8.2E-18 111.7 10.7 80 178-257 19-107 (118)
202 2d9o_A DNAJ (HSP40) homolog, s 99.4 1.7E-12 5.7E-17 103.4 11.8 77 179-262 10-93 (100)
203 3tht_A Alkylated DNA repair pr 99.4 7.4E-13 2.5E-17 128.0 9.3 78 174-257 13-97 (345)
204 2kn4_A Immunoglobulin G-bindin 99.4 9.7E-13 3.3E-17 113.5 9.0 120 208-334 2-121 (158)
205 3s6e_A RNA-binding protein 39; 99.3 1E-11 3.5E-16 101.2 9.4 78 176-257 4-91 (114)
206 2i2y_A Fusion protein consists 99.2 8.5E-12 2.9E-16 106.7 6.7 109 217-334 9-119 (150)
207 1owx_A Lupus LA protein, SS-B, 99.1 1.1E-10 3.8E-15 95.5 8.6 76 175-256 14-93 (121)
208 2dnr_A Synaptojanin-1; RRM dom 99.1 1.8E-10 6.1E-15 88.6 7.5 73 177-258 5-85 (91)
209 3pgw_S U1-70K; protein-RNA com 98.9 2.2E-10 7.5E-15 114.8 1.0 138 186-334 4-153 (437)
210 1ufw_A Synaptojanin 2; RNP dom 98.9 2.2E-09 7.6E-14 82.9 5.9 72 176-256 12-92 (95)
211 3dxb_A Thioredoxin N-terminall 98.8 7.2E-09 2.5E-13 94.2 8.6 79 179-257 124-211 (222)
212 2lea_A Serine/arginine-rich sp 98.6 2.4E-08 8.3E-13 83.6 5.0 93 223-334 6-98 (135)
213 1rk8_A CG8781-PA, CG8781-PA pr 98.5 9.3E-08 3.2E-12 82.8 4.8 106 226-334 11-123 (165)
214 2hgn_A Heterogeneous nuclear r 98.5 2.6E-07 8.8E-12 77.7 7.0 94 222-334 2-95 (139)
215 4fxv_A ELAV-like protein 1; RN 98.4 2.4E-07 8.2E-12 73.2 5.0 53 279-334 18-70 (99)
216 2lkz_A RNA-binding protein 5; 98.4 8.6E-08 2.9E-12 75.2 1.7 55 279-334 8-62 (95)
217 2l9w_A U4/U6 snRNA-associated- 98.3 3.2E-06 1.1E-10 66.6 9.7 72 177-254 19-95 (117)
218 3s8s_A Histone-lysine N-methyl 98.3 4.8E-07 1.6E-11 72.9 4.7 53 279-334 5-57 (110)
219 3s7r_A Heterogeneous nuclear r 98.3 9.5E-07 3.2E-11 67.5 5.7 55 277-334 8-62 (87)
220 2dgs_A DAZ-associated protein 98.3 1.1E-06 3.8E-11 68.9 6.1 55 277-334 7-61 (99)
221 2m2b_A RNA-binding protein 10; 98.3 1.9E-06 6.5E-11 71.4 7.5 58 276-334 19-76 (131)
222 1s79_A Lupus LA protein; RRM, 98.3 9.4E-07 3.2E-11 70.3 5.3 53 278-334 9-61 (103)
223 2lxi_A RNA-binding protein 10; 98.2 1.9E-07 6.5E-12 72.5 1.0 52 281-334 2-53 (91)
224 2dnm_A SRP46 splicing factor; 98.2 1.1E-06 3.9E-11 69.4 5.4 57 275-334 8-64 (103)
225 2dha_A FLJ20171 protein; RRM d 98.2 4.9E-07 1.7E-11 74.4 3.2 55 279-334 22-77 (123)
226 2lmi_A GRSF-1, G-rich sequence 98.2 3.6E-07 1.2E-11 73.0 2.3 56 278-334 9-64 (107)
227 2dh8_A DAZ-associated protein 98.2 1.8E-06 6.2E-11 68.4 6.3 57 276-335 12-68 (105)
228 2db1_A Heterogeneous nuclear r 98.2 5.8E-07 2E-11 73.3 2.9 56 278-334 15-70 (118)
229 3ns6_A Eukaryotic translation 98.2 8.3E-07 2.8E-11 70.0 3.2 52 280-334 6-63 (100)
230 2cqg_A TDP-43, TAR DNA-binding 98.2 2.9E-06 9.9E-11 67.0 6.4 55 277-334 12-66 (103)
231 2cq0_A Eukaryotic translation 98.2 2.4E-06 8.3E-11 67.5 5.9 56 276-334 11-66 (103)
232 2dgp_A Bruno-like 4, RNA bindi 98.2 2.3E-06 7.8E-11 67.9 5.7 56 276-334 9-64 (106)
233 1x4e_A RNA binding motif, sing 98.2 2.5E-06 8.7E-11 64.7 5.7 53 279-334 4-56 (85)
234 2rs2_A Musashi-1, RNA-binding 98.2 1.6E-06 5.4E-11 69.6 4.7 55 277-334 22-76 (109)
235 3n9u_C Cleavage and polyadenyl 98.2 2.1E-06 7.1E-11 73.6 5.7 55 279-334 54-108 (156)
236 3p5t_L Cleavage and polyadenyl 98.2 8.9E-07 3E-11 68.3 3.0 53 281-334 2-54 (90)
237 2khc_A Testis-specific RNP-typ 98.2 5.2E-06 1.8E-10 67.2 7.8 56 276-334 36-91 (118)
238 2cqd_A RNA-binding region cont 98.1 3.2E-06 1.1E-10 68.3 6.5 56 276-334 13-68 (116)
239 2cq4_A RNA binding motif prote 98.1 2.5E-06 8.4E-11 68.8 5.6 54 278-334 23-76 (114)
240 2e5h_A Zinc finger CCHC-type a 98.1 3.6E-06 1.2E-10 65.2 6.1 55 277-334 13-67 (94)
241 2hgl_A HNRPF protein, heteroge 98.1 1.1E-06 3.7E-11 73.6 3.2 57 277-334 41-97 (136)
242 2jrs_A RNA-binding protein 39; 98.1 3.8E-06 1.3E-10 67.2 6.3 56 276-334 22-77 (108)
243 1x5u_A Splicing factor 3B subu 98.1 3.2E-06 1.1E-10 66.9 5.8 56 276-334 11-66 (105)
244 1x4h_A RNA-binding protein 28; 98.1 3.2E-06 1.1E-10 67.6 5.8 55 277-334 12-66 (111)
245 1p27_B RNA-binding protein 8A; 98.1 2.7E-06 9.2E-11 67.5 5.0 55 277-334 20-74 (106)
246 2div_A TRNA selenocysteine ass 98.1 3.6E-06 1.2E-10 65.8 5.7 55 278-334 7-61 (99)
247 1wg5_A Heterogeneous nuclear r 98.1 4.2E-06 1.4E-10 66.4 6.0 53 278-334 13-66 (104)
248 2kxn_B Transformer-2 protein h 98.1 4.3E-06 1.5E-10 69.2 6.3 55 277-334 43-97 (129)
249 2dnz_A Probable RNA-binding pr 98.1 4.2E-06 1.4E-10 64.9 5.8 53 279-334 4-56 (95)
250 2dgo_A Cytotoxic granule-assoc 98.1 4.6E-06 1.6E-10 67.2 6.3 56 276-334 11-66 (115)
251 2dng_A Eukaryotic translation 98.1 3.6E-06 1.2E-10 66.5 5.4 53 278-334 13-65 (103)
252 3bs9_A Nucleolysin TIA-1 isofo 98.1 2.7E-06 9.1E-11 64.8 4.5 53 279-334 5-57 (87)
253 2j8a_A Histone-lysine N-methyl 98.1 2.8E-06 9.5E-11 69.7 4.7 51 281-334 3-57 (136)
254 1sjq_A Polypyrimidine tract-bi 98.1 2.5E-06 8.5E-11 68.0 4.3 48 278-334 14-61 (105)
255 2cpz_A CUG triplet repeat RNA- 98.1 6.4E-06 2.2E-10 66.4 6.9 54 278-334 23-76 (115)
256 2nlw_A Eukaryotic translation 98.1 5.1E-06 1.8E-10 66.0 6.2 55 278-334 13-70 (105)
257 1uaw_A Mouse-musashi-1; RNP-ty 98.1 1.7E-06 5.9E-11 64.3 3.1 51 281-334 1-51 (77)
258 1x5s_A Cold-inducible RNA-bind 98.1 5.2E-06 1.8E-10 65.3 6.0 55 277-334 9-63 (102)
259 1whw_A Hypothetical protein ri 98.1 4E-06 1.4E-10 65.6 5.2 54 278-334 6-59 (99)
260 2cph_A RNA binding motif prote 98.1 5.3E-06 1.8E-10 65.8 6.0 56 276-334 11-67 (107)
261 2cqc_A Arginine/serine-rich sp 98.1 5.4E-06 1.8E-10 64.2 5.9 54 278-334 13-66 (95)
262 1u6f_A Tcubp1, RNA-binding pro 98.1 6.3E-06 2.2E-10 68.8 6.7 56 276-334 38-93 (139)
263 4f25_A Polyadenylate-binding p 98.1 3.7E-06 1.3E-10 68.0 5.0 51 279-334 4-54 (115)
264 3mdf_A Peptidyl-prolyl CIS-tra 98.1 4.5E-06 1.5E-10 63.2 5.2 54 278-334 5-58 (85)
265 3md1_A Nuclear and cytoplasmic 98.0 4.1E-06 1.4E-10 63.2 4.8 51 281-334 2-52 (83)
266 1wi8_A EIF-4B, eukaryotic tran 98.0 5.2E-06 1.8E-10 65.7 5.6 53 278-334 13-66 (104)
267 2cqb_A Peptidyl-prolyl CIS-tra 98.0 1.8E-06 6.3E-11 68.0 2.9 55 277-334 9-63 (102)
268 3ucg_A Polyadenylate-binding p 98.0 6.6E-06 2.3E-10 62.9 6.0 52 280-334 6-57 (89)
269 2la6_A RNA-binding protein FUS 98.0 4.4E-06 1.5E-10 65.5 5.1 55 277-334 10-72 (99)
270 1wez_A HnRNP H', FTP-3, hetero 98.0 3E-06 1E-10 67.1 4.1 53 277-334 12-64 (102)
271 3q2s_C Cleavage and polyadenyl 98.0 3.8E-06 1.3E-10 76.6 5.3 55 279-334 67-121 (229)
272 2dhg_A TRNA selenocysteine ass 98.0 6.7E-06 2.3E-10 64.9 6.0 53 278-334 7-60 (104)
273 1oo0_B CG8781-PA, drosophila Y 98.0 3.8E-06 1.3E-10 67.2 4.6 55 277-334 23-77 (110)
274 2xs2_A Deleted in azoospermia- 98.0 2.6E-06 8.9E-11 67.1 3.5 54 278-335 7-60 (102)
275 2dnh_A Bruno-like 5, RNA bindi 98.0 7.3E-06 2.5E-10 64.8 6.2 53 278-334 13-65 (105)
276 2fy1_A RNA-binding motif prote 98.0 9E-06 3.1E-10 65.9 6.8 53 278-334 5-57 (116)
277 2hgm_A HNRPF protein, heteroge 98.0 4.6E-06 1.6E-10 68.8 5.1 52 278-334 40-93 (126)
278 1iqt_A AUF1, heterogeneous nuc 98.0 3.6E-06 1.2E-10 62.2 4.1 50 282-334 1-50 (75)
279 2x1f_A MRNA 3'-END-processing 98.0 3.5E-06 1.2E-10 65.6 4.2 52 280-334 2-53 (96)
280 2j76_E EIF-4B, EIF4B, eukaryot 98.0 5.4E-06 1.8E-10 65.2 5.3 54 277-334 16-70 (100)
281 3ex7_B RNA-binding protein 8A; 98.0 3.8E-06 1.3E-10 68.9 4.6 55 277-334 19-73 (126)
282 2do4_A Squamous cell carcinoma 98.0 1E-05 3.4E-10 63.5 6.7 54 277-334 14-67 (100)
283 2cpi_A CCR4-NOT transcription 98.0 3.1E-06 1E-10 68.0 3.7 58 277-334 12-72 (111)
284 1x4b_A Heterogeneous nuclear r 98.0 4.3E-06 1.5E-10 67.5 4.6 54 278-334 25-78 (116)
285 2d9p_A Polyadenylate-binding p 98.0 5.5E-06 1.9E-10 65.3 5.1 53 277-334 12-64 (103)
286 2mss_A Protein (musashi1); RNA 98.0 4.6E-06 1.6E-10 61.7 4.1 50 282-334 1-50 (75)
287 3d2w_A TAR DNA-binding protein 98.0 4.1E-06 1.4E-10 64.6 3.9 49 278-334 9-57 (89)
288 2ywk_A Putative RNA-binding pr 98.0 5.2E-06 1.8E-10 64.3 4.6 54 277-334 13-66 (95)
289 2ku7_A MLL1 PHD3-CYP33 RRM chi 98.0 9.6E-06 3.3E-10 67.5 6.5 56 276-334 59-114 (140)
290 1x5o_A RNA binding motif, sing 98.0 1.4E-05 4.9E-10 64.1 7.3 54 277-334 22-75 (114)
291 1x5t_A Splicing factor 3B subu 98.0 6.4E-06 2.2E-10 64.0 4.8 54 279-334 4-57 (96)
292 1h2v_Z 20 kDa nuclear CAP bind 98.0 6.6E-06 2.3E-10 70.2 5.3 54 278-334 37-90 (156)
293 2cpy_A RNA-binding protein 12; 98.0 2.9E-06 1E-10 68.5 2.8 53 278-334 13-66 (114)
294 2cpf_A RNA binding motif prote 98.0 5.1E-06 1.8E-10 64.8 4.0 53 279-334 4-59 (98)
295 2dgw_A Probable RNA-binding pr 97.9 5.4E-06 1.9E-10 63.8 3.8 53 277-334 7-59 (91)
296 2cpe_A RNA-binding protein EWS 97.9 3.6E-06 1.2E-10 67.6 2.8 58 277-334 12-74 (113)
297 4a8x_A RNA-binding protein wit 97.9 7.7E-06 2.6E-10 62.3 4.3 53 279-334 3-56 (88)
298 2jwn_A Embryonic polyadenylate 97.9 9.5E-06 3.2E-10 66.3 5.1 53 279-334 35-87 (124)
299 2a3j_A U1 small nuclear ribonu 97.9 6.9E-06 2.4E-10 67.8 4.2 53 279-334 28-81 (127)
300 3ulh_A THO complex subunit 4; 97.9 9.3E-06 3.2E-10 64.4 4.8 53 278-334 27-79 (107)
301 2krb_A Eukaryotic translation 97.9 9.7E-06 3.3E-10 61.0 4.6 52 281-334 2-56 (81)
302 2do0_A HnRNP M, heterogeneous 97.9 1.4E-05 4.9E-10 64.1 6.0 53 278-334 13-65 (114)
303 2ad9_A Polypyrimidine tract-bi 97.9 6.1E-06 2.1E-10 67.3 3.6 48 278-334 29-76 (119)
304 2dgv_A HnRNP M, heterogeneous 97.9 1.8E-05 6E-10 60.9 5.8 52 278-334 6-57 (92)
305 2dis_A Unnamed protein product 97.9 7.5E-06 2.6E-10 65.2 3.8 54 279-334 7-61 (109)
306 2ki2_A SS-DNA binding protein 97.9 5.3E-06 1.8E-10 63.7 2.8 51 281-334 2-52 (90)
307 1p1t_A Cleavage stimulation fa 97.9 1.1E-05 3.9E-10 63.5 4.7 53 279-334 7-59 (104)
308 2cq3_A RNA-binding protein 9; 97.9 1.3E-05 4.4E-10 63.2 4.9 53 277-334 12-64 (103)
309 2dnl_A Cytoplasmic polyadenyla 97.9 6.9E-06 2.4E-10 66.2 3.1 52 279-334 7-61 (114)
310 3r27_A HnRNP L, heterogeneous 97.8 1.2E-05 4E-10 63.4 4.3 47 279-334 20-66 (100)
311 2voo_A Lupus LA protein; RNA-b 97.8 1.5E-05 5.1E-10 70.7 5.4 95 230-334 63-159 (193)
312 2cqi_A Nucleolysin TIAR; RNA r 97.8 2.8E-05 9.5E-10 61.2 6.4 53 277-334 12-64 (103)
313 2dnn_A RNA-binding protein 12; 97.8 6.9E-06 2.4E-10 65.9 2.8 50 280-334 16-65 (109)
314 2cqp_A RNA-binding protein 12; 97.8 6.7E-06 2.3E-10 64.2 2.6 54 278-334 13-66 (98)
315 1wel_A RNA-binding protein 12; 97.8 5.9E-06 2E-10 67.7 2.2 54 278-334 23-76 (124)
316 2cq1_A PTB-like protein L; RRM 97.8 2.5E-05 8.5E-10 61.7 5.5 48 278-334 13-60 (101)
317 2ek1_A RNA-binding protein 12; 97.8 4.5E-06 1.5E-10 64.7 1.2 53 279-334 14-66 (95)
318 2dgx_A KIAA0430 protein; RRM d 97.8 1.6E-05 5.5E-10 61.9 4.4 50 279-334 8-61 (96)
319 2dhx_A Poly (ADP-ribose) polym 97.8 0.00026 8.8E-09 55.3 11.0 71 177-256 6-81 (104)
320 2kt5_A RNA and export factor-b 97.8 3.2E-05 1.1E-09 63.1 6.1 54 277-334 32-85 (124)
321 1wf0_A TDP-43, TAR DNA-binding 97.8 1.1E-05 3.7E-10 61.7 3.0 48 279-334 4-51 (88)
322 1wex_A Hypothetical protein (r 97.8 2.3E-05 8E-10 62.2 5.0 48 278-334 13-60 (104)
323 2cpx_A Hypothetical protein FL 97.8 2.6E-05 8.9E-10 62.6 5.2 53 278-334 23-76 (115)
324 1wf1_A RNA-binding protein RAL 97.7 1.9E-05 6.6E-10 63.0 4.1 45 279-334 26-71 (110)
325 1x4a_A Splicing factor, argini 97.7 2.8E-05 9.6E-10 61.9 4.9 52 277-334 19-70 (109)
326 1x4f_A Matrin 3; structural ge 97.7 2.8E-05 9.5E-10 62.6 4.7 48 278-334 23-71 (112)
327 2lcw_A RNA-binding protein FUS 96.9 4.7E-06 1.6E-10 67.4 0.0 58 278-335 5-67 (116)
328 2err_A Ataxin-2-binding protei 97.7 1.4E-05 4.7E-10 64.0 2.5 54 276-334 25-78 (109)
329 1fj7_A Nucleolin RBD1, protein 97.7 6.8E-06 2.3E-10 64.5 0.7 53 278-334 15-67 (101)
330 2jvo_A Nucleolar protein 3; nu 97.7 4E-05 1.4E-09 61.1 5.0 48 276-334 27-74 (108)
331 1x4d_A Matrin 3; structural ge 97.7 2.3E-05 8E-10 62.0 3.4 47 279-334 14-61 (102)
332 1x4c_A Splicing factor, argini 97.7 5.5E-05 1.9E-09 60.2 5.5 47 278-334 13-59 (108)
333 2fc9_A NCL protein; structure 97.6 2.3E-05 8E-10 61.4 3.2 51 277-334 12-62 (101)
334 2wbr_A GW182, gawky, LD47780P; 97.6 2.3E-05 7.9E-10 60.0 2.9 46 280-334 7-52 (89)
335 2ytc_A PRE-mRNA-splicing facto 97.6 4.9E-05 1.7E-09 57.4 4.8 49 277-334 9-57 (85)
336 1nu4_A U1A RNA binding domain; 97.6 1.4E-05 4.8E-10 62.1 1.8 54 278-334 6-60 (97)
337 2dnq_A RNA-binding protein 4B; 97.6 5.4E-05 1.8E-09 58.0 4.9 46 278-334 6-51 (90)
338 2f3j_A RNA and export factor b 97.6 6E-05 2E-09 65.8 5.7 53 278-334 86-138 (177)
339 2la4_A Nuclear and cytoplasmic 97.6 6.3E-05 2.2E-09 58.9 5.2 47 279-334 26-72 (101)
340 2fc8_A NCL protein; structure 97.6 4.3E-05 1.5E-09 59.9 4.2 52 277-334 12-63 (102)
341 2dgt_A RNA-binding protein 30; 97.6 4.6E-05 1.6E-09 58.6 4.2 48 276-334 6-53 (92)
342 2cpd_A Apobec-1 stimulating pr 97.6 9.9E-05 3.4E-09 57.5 6.0 48 278-334 13-60 (99)
343 1wey_A Calcipressin 1; structu 97.6 0.00015 5.1E-09 56.9 6.6 74 179-258 5-83 (104)
344 2cq2_A Hypothetical protein LO 97.6 8.1E-05 2.8E-09 60.1 5.1 47 279-334 24-72 (114)
345 2e5g_A U6 snRNA-specific termi 97.5 8.9E-05 3E-09 57.3 4.8 48 279-334 7-54 (94)
346 2hvz_A Splicing factor, argini 97.5 4.5E-05 1.5E-09 59.8 3.1 46 281-334 1-46 (101)
347 3beg_B Splicing factor, argini 97.5 4.5E-05 1.5E-09 61.6 3.1 46 279-334 15-60 (115)
348 3lqv_A PRE-mRNA branch site pr 97.5 7.7E-05 2.6E-09 59.9 4.5 50 279-334 7-56 (115)
349 2cpj_A Non-POU domain-containi 97.5 8.5E-05 2.9E-09 57.9 4.4 48 278-334 13-60 (99)
350 3egn_A RNA-binding protein 40; 97.5 1.9E-05 6.6E-10 66.2 0.7 53 279-334 44-101 (143)
351 2jvr_A Nucleolar protein 3; RN 97.5 9.5E-05 3.2E-09 59.4 4.6 49 279-334 27-76 (111)
352 2dgu_A Heterogeneous nuclear r 97.5 0.0001 3.4E-09 58.0 4.6 46 278-334 9-54 (103)
353 2e5j_A Methenyltetrahydrofolat 97.5 0.0001 3.5E-09 57.3 4.6 49 278-334 17-65 (97)
354 1x4g_A Nucleolysin TIAR; struc 97.5 0.00011 3.8E-09 58.4 4.9 48 278-334 23-70 (109)
355 2dnp_A RNA-binding protein 14; 97.4 7.6E-05 2.6E-09 57.1 3.5 46 278-334 7-52 (90)
356 1why_A Hypothetical protein ri 97.4 0.00022 7.5E-09 55.3 6.0 48 278-334 15-62 (97)
357 1uw4_A UPF3X; nonsense mediate 97.4 0.0015 5.1E-08 50.2 10.4 68 180-247 2-71 (91)
358 2xnq_A Nuclear polyadenylated 97.4 0.00014 4.9E-09 56.6 4.8 46 278-334 20-66 (97)
359 1whx_A Hypothetical protein ri 97.4 5.5E-05 1.9E-09 60.6 2.3 47 279-334 9-55 (111)
360 2kvi_A Nuclear polyadenylated 97.4 0.00013 4.6E-09 56.5 4.5 46 278-334 8-54 (96)
361 1sjr_A Polypyrimidine tract-bi 97.4 0.00011 3.7E-09 63.1 4.0 49 279-334 45-93 (164)
362 1fjc_A Nucleolin RBD2, protein 97.3 5.1E-05 1.7E-09 58.8 1.4 49 278-334 14-62 (96)
363 2cqh_A IGF-II mRNA-binding pro 97.3 0.00013 4.3E-09 56.2 3.6 47 278-334 6-53 (93)
364 1whv_A Poly(A)-specific ribonu 97.3 0.0008 2.7E-08 51.9 7.4 58 175-241 12-69 (100)
365 2pe8_A Splicing factor 45; RRM 97.3 0.00032 1.1E-08 55.6 5.5 56 279-334 7-65 (105)
366 2hzc_A Splicing factor U2AF 65 97.2 0.00027 9.2E-09 53.4 4.4 50 279-334 5-62 (87)
367 3u1l_A PRE-mRNA-splicing facto 97.2 0.00028 9.5E-09 64.5 4.7 52 277-334 131-188 (240)
368 1wg1_A KIAA1579 protein, homol 97.2 0.0002 6.7E-09 54.6 3.0 46 279-334 4-49 (88)
369 3zzy_A Polypyrimidine tract-bi 97.1 0.00037 1.3E-08 57.5 4.1 48 279-334 27-75 (130)
370 1x5p_A Negative elongation fac 97.0 0.0012 4.2E-08 51.0 6.5 46 278-334 13-58 (97)
371 2e44_A Insulin-like growth fac 97.0 0.00063 2.2E-08 52.4 4.3 49 279-334 14-63 (96)
372 2diu_A KIAA0430 protein; struc 97.0 0.00057 2E-08 52.8 3.8 45 280-334 9-55 (96)
373 1wwh_A Nucleoporin 35, nucleop 96.9 0.004 1.4E-07 50.1 8.8 72 177-256 22-94 (119)
374 3ctr_A Poly(A)-specific ribonu 96.9 0.0013 4.3E-08 51.0 5.3 54 180-242 7-60 (101)
375 2e5i_A Heterogeneous nuclear r 96.9 0.00067 2.3E-08 55.5 3.9 45 281-334 26-71 (124)
376 2bz2_A Negative elongation fac 96.8 0.0011 3.6E-08 53.9 4.6 46 278-334 37-82 (121)
377 3ue2_A Poly(U)-binding-splicin 96.7 0.0013 4.6E-08 53.2 4.2 56 279-334 19-80 (118)
378 3tht_A Alkylated DNA repair pr 96.4 0.00077 2.6E-08 64.9 1.3 49 277-334 15-65 (345)
379 3v4m_A Splicing factor U2AF 65 96.3 0.0036 1.2E-07 49.5 4.5 55 280-334 5-68 (105)
380 2l08_A Regulator of nonsense t 96.3 0.0089 3.1E-07 46.2 6.3 79 178-256 8-93 (97)
381 2d9o_A DNAJ (HSP40) homolog, s 96.1 0.011 3.9E-07 46.1 6.3 35 292-334 29-63 (100)
382 2dit_A HIV TAT specific factor 96.0 0.0062 2.1E-07 48.4 4.6 53 278-334 13-73 (112)
383 1jmt_A Splicing factor U2AF 35 95.9 0.0019 6.4E-08 51.0 0.8 49 285-334 20-77 (104)
384 3p3d_A Nucleoporin 53; structu 95.8 0.013 4.3E-07 47.8 5.3 76 180-257 8-97 (132)
385 3pq1_A Poly(A) RNA polymerase; 95.6 0.0047 1.6E-07 61.5 2.6 55 180-240 54-108 (464)
386 3s6e_A RNA-binding protein 39; 94.4 0.02 6.9E-07 45.8 2.7 51 280-334 7-64 (114)
387 1owx_A Lupus LA protein, SS-B, 94.0 0.036 1.2E-06 44.8 3.4 48 278-334 16-64 (121)
388 3dxb_A Thioredoxin N-terminall 90.4 0.2 6.8E-06 44.5 4.0 42 293-334 139-184 (222)
389 3d45_A Poly(A)-specific ribonu 87.7 1.1 3.9E-05 45.1 7.7 56 178-242 439-494 (507)
390 2dnr_A Synaptojanin-1; RRM dom 81.8 1.1 3.9E-05 33.9 3.4 30 297-334 29-58 (91)
391 1ufw_A Synaptojanin 2; RNP dom 77.3 0.87 3E-05 34.8 1.5 49 278-334 13-67 (95)
392 2g0c_A ATP-dependent RNA helic 68.3 8.3 0.00028 27.6 5.0 67 181-256 2-74 (76)
393 1uw4_A UPF3X; nonsense mediate 40.2 51 0.0018 24.6 5.3 51 281-334 2-54 (91)
394 4e8u_A Putative uncharacterize 31.6 90 0.0031 26.3 5.9 56 180-238 13-80 (172)
395 4eyt_A Telomerase associated p 26.7 2E+02 0.0067 21.4 7.6 57 177-241 10-66 (129)
396 3lpe_A Putative transcription 25.9 1.2E+02 0.0041 22.4 5.3 34 206-244 40-73 (92)
397 3fry_A Probable copper-exporti 22.0 1.6E+02 0.0056 19.7 5.2 55 180-241 7-61 (73)
398 3fut_A Dimethyladenosine trans 20.5 69 0.0024 29.0 3.5 33 179-212 110-142 (271)
399 2l9w_A U4/U6 snRNA-associated- 20.1 97 0.0033 24.2 3.7 47 279-334 20-71 (117)
No 1
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.93 E-value=2.6e-25 Score=199.07 Aligned_cols=148 Identities=22% Similarity=0.324 Sum_probs=121.7
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy4080 174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRV 253 (403)
Q Consensus 174 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V 253 (403)
..+...++|||+|||+++|+++|+++|+.||.|.+|.|+.++.+|.++|||||+|.+.++|.+||+. ++..|.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 3456679999999999999999999999999999999999999999999999999999999999965 999999999999
Q ss_pred EeccCCCCCCCCCCcCCCCCCcccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeec
Q psy4080 254 DFSVTQRAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFS 333 (403)
Q Consensus 254 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~ 333 (403)
.++........ ........+|||+||+..+++.++. +.|..+|.|..|.++.+..++.++|||||+|.
T Consensus 87 ~~~~~~~~~~~---------~~~~~~~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~ 154 (196)
T 1l3k_A 87 KRAVSREDSQR---------PGAHLTVKKIFVGGIKEDTEEHHLR---DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFD 154 (196)
T ss_dssp EECCC--------------------CCSEEEEECCTTTCCHHHHH---HHHTTTSCEEEEEEEECTTTCCEEEEEEEEES
T ss_pred ecccCcccccc---------cccCCCcceEEEeCCCCCCCHHHHH---HHHhcCCCeEEEEEeecCCCCCccceEEEEEC
Confidence 99866543211 1122345789999999887666655 55556667888889998889999999999997
Q ss_pred c
Q psy4080 334 G 334 (403)
Q Consensus 334 ~ 334 (403)
.
T Consensus 155 ~ 155 (196)
T 1l3k_A 155 D 155 (196)
T ss_dssp S
T ss_pred C
Confidence 5
No 2
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.93 E-value=2.1e-25 Score=203.46 Aligned_cols=141 Identities=23% Similarity=0.239 Sum_probs=118.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy4080 176 PQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDF 255 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~ 255 (403)
..+.++|||+|||+++||++|+++|++||+|++|.|++|+.|+.++|||||+|.+.++|.+||+.|++..+.|+.|.|.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCCCCCCcCCCCCCcccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 256 SVTQRAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 256 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
+..... .......+|||+||+..+++.+|.++|+.|| .|+.|.++++. ...+|||||+|..
T Consensus 92 ~~~~~~-------------~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G---~i~~~~i~~d~--~~~~g~~fV~f~~ 152 (213)
T 4f02_A 92 SQRDPS-------------LRKSGVGNIFIKNLDKSIDNKALYDTFSAFG---NILSCKVVCDE--NGSKGYGFVHFET 152 (213)
T ss_dssp CCCCTH-------------HHHHCTTEEEEESCCTTCCHHHHHHHHGGGS---CEEEEEEEEET--TEEEEEEEEEESS
T ss_pred cccccc-------------ccccccccceECCcccccHHHHHHHHHhhcC---CeEEEEeeccC--CCCceEEEEEeCC
Confidence 754321 2223456899999999888777666666555 66677788764 4478999999964
No 3
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.93 E-value=1e-24 Score=189.58 Aligned_cols=138 Identities=17% Similarity=0.265 Sum_probs=121.0
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q psy4080 179 SRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVT 258 (403)
Q Consensus 179 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~~ 258 (403)
.++|||+|||+++|+++|+++|+.||+|..|.++.++.+|.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57999999999999999999999999999999999988999999999999999999999999999999999999999864
Q ss_pred CCCCCCCCCcCCCCCCcccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 259 QRAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.. ......+++|+||+..+++.++.++|+.| |.|..+.++.+..++.++|+|||+|..
T Consensus 82 ~~---------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~---G~i~~~~i~~~~~~g~~~g~afV~f~~ 139 (167)
T 1fxl_A 82 SS---------------ASIRDANLYVSGLPKTMTQKELEQLFSQY---GRIITSRILVDQVTGVSRGVGFIRFDK 139 (167)
T ss_dssp CC---------------GGGTTCEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred Cc---------------ccCCCCcEEECCCCCcCCHHHHHHHHHhc---CCEeEEEEEecCCCCCccceEEEEeCC
Confidence 32 12345789999999987777666555555 567778888888889999999999975
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.93 E-value=8.1e-25 Score=190.81 Aligned_cols=139 Identities=19% Similarity=0.325 Sum_probs=122.3
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy4080 178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSV 257 (403)
Q Consensus 178 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~ 257 (403)
+.++|||+|||+++|+++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|.+|++.|++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCcCCCCCCcccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 258 TQRAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
+... .....+++|+||+..+++.+ |.+.|+.+|.|..+.++.+..++.++|+|||+|..
T Consensus 82 ~~~~---------------~~~~~~l~v~nl~~~~t~~~---l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~ 140 (168)
T 1b7f_A 82 PGGE---------------SIKDTNLYVTNLPRTITDDQ---LDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNK 140 (168)
T ss_dssp CCSS---------------TTTTCEEEEESCCTTCCHHH---HHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred CCcc---------------cCCCCCEEEeCCCCCCCHHH---HHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECC
Confidence 5432 23457899999998866655 55556666678888899988889999999999974
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.3e-24 Score=187.18 Aligned_cols=138 Identities=16% Similarity=0.282 Sum_probs=118.7
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q psy4080 180 RCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVTQ 259 (403)
Q Consensus 180 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~~~ 259 (403)
++|||+|||+++|+++|+++|++||+|.+|.|+.++ ++.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 589999999999999999999999999999999985 5789999999999999999999999999999999999998654
Q ss_pred CCCCCCCCcCCCCCCcccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 260 RAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.. .......+++|+||+..+++.+ |.+.|+.+|.|..+.++.+..++.++|+|||+|..
T Consensus 80 ~~-------------~~~~~~~~l~v~nl~~~~t~~~---l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~ 138 (166)
T 3md3_A 80 QQ-------------SSSDDTFNLFVGDLNVNVDDET---LRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTS 138 (166)
T ss_dssp CC-------------CCCTTCEEEEEESCCTTCCHHH---HHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESC
T ss_pred CC-------------CCCCCCceEEECCCCCCCCHHH---HHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCC
Confidence 43 1223457899999998876666 55555666678888899988899999999999974
No 6
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.91 E-value=1.2e-23 Score=184.38 Aligned_cols=139 Identities=17% Similarity=0.240 Sum_probs=117.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCC--CcceEEEEEecCHHHHHHHHHHhCCceeC---CeEEE
Q psy4080 178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTG--RSRGFCFVYFESRDDAAAAKDACTGMEID---GRQIR 252 (403)
Q Consensus 178 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg--~~rG~afV~f~~~~~a~~Al~~l~g~~l~---g~~i~ 252 (403)
..++|||+|||+++|+++|+++|++||+|.+|.|+.++.++ .++|||||+|.+.++|.+|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46899999999999999999999999999999999998887 89999999999999999999999998875 67888
Q ss_pred EEeccCCCCCCCCCCcCCCCCCcccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeee
Q psy4080 253 VDFSVTQRAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQF 332 (403)
Q Consensus 253 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f 332 (403)
|.++..... ......+|||+||+..+++.++.++|+.|| .|..+.++.+. ++.++|+|||+|
T Consensus 82 ~~~~~~~~~--------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G---~i~~v~~~~~~-~g~~~g~afV~f 143 (175)
T 3nmr_A 82 MKPADSEKN--------------NAVEDRKLFIGMISKKCTENDIRVMFSSFG---QIEECRILRGP-DGLSRGCAFVTF 143 (175)
T ss_dssp EEECGGGCC--------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGS---CEEEEEEEECT-TSCEEEEEEEEE
T ss_pred Ecccccccc--------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCC---CEEEEEEEECC-CCCEEEEEEEEE
Confidence 888754432 123456899999999887777666666555 57778888874 578899999999
Q ss_pred cc
Q psy4080 333 SG 334 (403)
Q Consensus 333 ~~ 334 (403)
..
T Consensus 144 ~~ 145 (175)
T 3nmr_A 144 TT 145 (175)
T ss_dssp SS
T ss_pred CC
Confidence 75
No 7
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.90 E-value=2e-24 Score=196.18 Aligned_cols=149 Identities=16% Similarity=0.234 Sum_probs=119.8
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q psy4080 179 SRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVT 258 (403)
Q Consensus 179 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~~ 258 (403)
.++|||+|||.++|+++|+++|+.||.|.+|.|+.++.++.++|||||+|.+.++|.+||+.|++..|.|+.|.|.++..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 47999999999999999999999999999999999988999999999999999999999999999999999999988754
Q ss_pred CCCCCCCCCcCCCCCCcccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 259 QRAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.....+.. ...........+|||+||+..+++.+ |.+.|..+|.|+.|.++.+..++.++|+|||+|..
T Consensus 108 ~~~~~~~~----~~~~~~~~~~~~l~v~nlp~~~t~~~---l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~ 176 (216)
T 2qfj_A 108 IGQAQPII----DQLAEEARAFNRIYVASVHQDLSDDD---IKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEK 176 (216)
T ss_dssp CGGGHHHH----HHHHHHHTTSCEEEEECCCTTCCHHH---HHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred ccccchhh----hhhhcccCCCcEEEEeCCCCcCCHHH---HHHHHhccCCeeEEEEEecCCCCCcCceEEEEecC
Confidence 33111000 00011224557899999998866555 55556666788889999998899999999999975
No 8
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.90 E-value=3.2e-24 Score=186.94 Aligned_cols=137 Identities=23% Similarity=0.343 Sum_probs=118.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy4080 178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSV 257 (403)
Q Consensus 178 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~ 257 (403)
++++|||+|||+++|+++|+++|++||.|.+|.|+.++.+|.++|||||+|.+.++|.+||+ ++..++|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 46899999999999999999999999999999999999999999999999999999999997 4678999999999875
Q ss_pred CCCCCCCCCCcCCCCCCcccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 258 TQRAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
+.. ......++||+||+..+++.++.++|+.|| .|..+.++.+..++.++|+|||+|..
T Consensus 80 ~~~---------------~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G---~i~~~~i~~~~~~g~~~g~afV~f~~ 138 (167)
T 2cjk_A 80 PRD---------------EQDKTGKIFVGGIGPDVRPKEFEEFFSQWG---TIIDAQLMLDKDTGQSRGFGFVTYDS 138 (167)
T ss_dssp CHH---------------HHHHCEEEEEEEECTTCCHHHHHHHHHTTS---CCSEEECCCSSSSSTTSEEEEEEESS
T ss_pred chh---------------hccCCCeEEECCCCCCCCHHHHHHHHHhCc---cEEEEEEEEcCCCCccceEEEEEECC
Confidence 422 223456899999999988888777777666 45567788888899999999999974
No 9
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.90 E-value=3.2e-23 Score=196.76 Aligned_cols=177 Identities=17% Similarity=0.168 Sum_probs=140.9
Q ss_pred CCCCceeeeechhhHHHHHHHHHhHhh--hhCCCCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCC
Q psy4080 142 YGGRGKIIIAVVTEVEEEAEATAMVEE--FADGRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGR 219 (403)
Q Consensus 142 ~~g~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~ 219 (403)
..|++|+.|...+.+..+........- ...........++|||+|||+++|+++|+++|+.||.|..|.++.++.+|.
T Consensus 56 ~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~ 135 (284)
T 3smz_A 56 YKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQ 135 (284)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCC
T ss_pred CCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCc
Confidence 357999999999999888765432110 001111234568999999999999999999999999999999999999999
Q ss_pred cceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccCCCCCCCCCCcCCCCCCcccCCCceeeeCCCCCcc-ccchHH
Q psy4080 220 SRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEK-HAIKGG 298 (403)
Q Consensus 220 ~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~l~~~~-~~~~~~ 298 (403)
++|||||+|.+.++|.+|++.|+|..++|+.|.|.++.+.... .......+|+|+||+..+ ++.+
T Consensus 136 ~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~------------~~~~~~~~l~v~nlp~~~~~~~~-- 201 (284)
T 3smz_A 136 SKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLT------------PALLHSRCLCVDRLPPGFNDVDA-- 201 (284)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCC------------TTTTSCSEEEEECCCTTCCCHHH--
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCC------------cccCCccEEEEecCCcccCCHHH--
Confidence 9999999999999999999999999999999999998764321 122345789999999884 5555
Q ss_pred HHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 299 KFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 299 ~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
|.+.|+.+|.|..+.++.+. ++.++|+|||+|..
T Consensus 202 -l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~ 235 (284)
T 3smz_A 202 -LCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYET 235 (284)
T ss_dssp -HHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSS
T ss_pred -HHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCC
Confidence 55555566666677788764 78889999999975
No 10
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.90 E-value=1.3e-22 Score=183.96 Aligned_cols=150 Identities=15% Similarity=0.092 Sum_probs=114.8
Q ss_pred CCCCEEEEcCCC-CCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy4080 177 QPSRCLGVFGLS-IYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDF 255 (403)
Q Consensus 177 ~~~~~l~V~nLp-~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~ 255 (403)
.++++|||+||| ..+|+++|+++|++||.|.+|.|+.+ .+|||||+|.+.++|++||+.|||..|.|++|.|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 357899999999 89999999999999999999999765 368999999999999999999999999999999999
Q ss_pred ccCCCCCCCCC----------CcCCCCCC------------cccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEE
Q psy4080 256 SVTQRAHTPTP----------GIYMGRPT------------YEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGV 313 (403)
Q Consensus 256 a~~~~~~~~~~----------~~~~~~~~------------~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v 313 (403)
+..+....... ..+.+... .......+|||+||+..+++++|+++|+.||.+. ++.+
T Consensus 77 s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~-~~~v 155 (205)
T 3tyt_A 77 SKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKR-PTSV 155 (205)
T ss_dssp CSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCC-CSEE
T ss_pred ccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcc-eEEE
Confidence 87543211000 00000000 0012346799999999999999999999988761 1244
Q ss_pred EEeeeCCCCCCcceeeeeecc
Q psy4080 314 GAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 314 ~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.++.+. +..+++|||+|..
T Consensus 156 ~~~~~~--~~~~g~gfV~f~~ 174 (205)
T 3tyt_A 156 KVFSGK--SERSSSGLLEWDS 174 (205)
T ss_dssp EECSCC--SSSSEEEEEECSS
T ss_pred EEEcCC--CCCceEEEEEeCC
Confidence 555442 5567999999975
No 11
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.89 E-value=2.4e-23 Score=198.36 Aligned_cols=180 Identities=14% Similarity=0.074 Sum_probs=131.2
Q ss_pred CCCceeeeechhhHHHHHHHHHhHhhhhCCCCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCC-CeEEEEEEeeCCCCCcc
Q psy4080 143 GGRGKIIIAVVTEVEEEAEATAMVEEFADGRENPQPSRCLGVFGLSIYTTEQQINHIFSKYG-PVERVEVVIDAKTGRSR 221 (403)
Q Consensus 143 ~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~v~i~~d~~tg~~r 221 (403)
.|++|+.|...+++..+.+..........-.......++|||+|||+++|+++|.++|..|| .|..|.|+.++. +.++
T Consensus 81 ~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~ 159 (292)
T 2ghp_A 81 FRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSR 159 (292)
T ss_dssp SEEEEEEESSHHHHHHHHTTTTCEETTEECEEEECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------C
T ss_pred cEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcc
Confidence 58999999999988888742110000000111223578999999999999999999999999 999999998855 8899
Q ss_pred eEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccCCCCCCCCCCcCCCCCCcccCCCceeeeCCCCCc-cccchHHHH
Q psy4080 222 GFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTYEQLNNTQSELGSLLSE-KHAIKGGKF 300 (403)
Q Consensus 222 G~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~l~~~-~~~~~~~~l 300 (403)
|||||+|.+.++|.+|++.|+|..|.|+.|.|.++.+....... ........+|||+||+.. +++.++.++
T Consensus 160 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~--------~~~~~~~~~l~v~nlp~~~~t~~~l~~~ 231 (292)
T 2ghp_A 160 RFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRT--------DSATLEGREIMIRNLSTELLDENLLRES 231 (292)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC-----------------CCTTTEEEEEEECTTTCCHHHHHHH
T ss_pred eEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccc--------cccCCCCceEEEECCCcccCCHHHHHHH
Confidence 99999999999999999999999999999999999765432221 122345678999999988 777776666
Q ss_pred HHhcCCcceEEEEEEeeeCC-CCCCcceeeeeecc
Q psy4080 301 EEVFGEIATVVGVGAVTMTE-MSGNGRISPLQFSG 334 (403)
Q Consensus 301 ~~~Fg~~g~v~~v~~~~~~~-~~~~~g~~fv~f~~ 334 (403)
|+.| |.|..|.++.+.. ++.++|+|||+|..
T Consensus 232 F~~~---G~v~~v~i~~~~~~tg~~~g~afV~F~~ 263 (292)
T 2ghp_A 232 FEGF---GSIEKINIPAGQKEHSFNNCCAFMVFEN 263 (292)
T ss_dssp HGGG---SCEEEEECCSCCC---CCCEEEEEEESS
T ss_pred Hhcc---CCeeEEEEEecCCcCCCCceEEEEEeCC
Confidence 6655 5667778887765 58899999999975
No 12
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.87 E-value=6.6e-22 Score=173.08 Aligned_cols=132 Identities=17% Similarity=0.226 Sum_probs=110.8
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcC----C-------CeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCcee
Q psy4080 178 PSRCLGVFGLSIYTTEQQINHIFSKY----G-------PVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEI 246 (403)
Q Consensus 178 ~~~~l~V~nLp~~~te~~L~~~F~~~----G-------~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l 246 (403)
+.++|||+|||+++|+++|+++|++| | .|.++.+.. ++|||||+|.+.++|.+|| .|++..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46899999999999999999999999 6 777776643 4789999999999999999 8999999
Q ss_pred CCeEEEEEeccCCCCCCCCCCcCCCCCCcccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcc
Q psy4080 247 DGRQIRVDFSVTQRAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGR 326 (403)
Q Consensus 247 ~g~~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g 326 (403)
.|+.|.|.++..... .....+++|+||+..+++.++.++|+.| |.|..+.++.+..++.++|
T Consensus 76 ~g~~i~v~~~~~~~~---------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~---G~v~~v~i~~~~~~g~~~g 137 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQP---------------LPGAHKLFIGGLPNYLNDDQVKELLTSF---GPLKAFNLVKDSATGLSKG 137 (172)
T ss_dssp TTEECEEECCSSCCC---------------CTTTTCEEEECCCTTCCHHHHHHHHHTT---SCEEEEEEEECTTTCSEEE
T ss_pred cCceeeecCCcccCC---------------CCCCCEEEEEcCCCcCCHHHHHHHHHhc---CCceEEEEEecCCCCCcce
Confidence 999999998754322 1235789999999987777766666555 5677888998888999999
Q ss_pred eeeeeecc
Q psy4080 327 ISPLQFSG 334 (403)
Q Consensus 327 ~~fv~f~~ 334 (403)
+|||+|..
T Consensus 138 ~afV~f~~ 145 (172)
T 2g4b_A 138 YAFCEYVD 145 (172)
T ss_dssp EEEEEESS
T ss_pred EEEEEeCC
Confidence 99999975
No 13
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.87 E-value=1.3e-21 Score=175.15 Aligned_cols=147 Identities=17% Similarity=0.192 Sum_probs=113.3
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcC----C-------CeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCcee
Q psy4080 178 PSRCLGVFGLSIYTTEQQINHIFSKY----G-------PVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEI 246 (403)
Q Consensus 178 ~~~~l~V~nLp~~~te~~L~~~F~~~----G-------~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l 246 (403)
..++|||+|||+++|+++|+++|++| | .|.++.+ +.++|||||+|.+.++|.+|| .|||..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 5 5666555 445789999999999999999 8999999
Q ss_pred CCeEEEEEeccCCCCCCCCCCc---C--CCCCCcccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCC
Q psy4080 247 DGRQIRVDFSVTQRAHTPTPGI---Y--MGRPTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEM 321 (403)
Q Consensus 247 ~g~~i~V~~a~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~ 321 (403)
.|+.|.|.++............ . ............+|||+||+..+++.++.++|+.| |.|..|.++.+..+
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~---G~v~~~~~~~~~~~ 152 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSF---GPLKAFNLVKDSAT 152 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTB---SCEEEEEEEECTTT
T ss_pred cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHc---CCccEEEEeecCCC
Confidence 9999999998765332211000 0 00111122456899999999987777766666555 56778889988889
Q ss_pred CCCcceeeeeecc
Q psy4080 322 SGNGRISPLQFSG 334 (403)
Q Consensus 322 ~~~~g~~fv~f~~ 334 (403)
+.++|+|||+|..
T Consensus 153 ~~~~g~afV~f~~ 165 (198)
T 2yh0_A 153 GLSKGYAFCEYVD 165 (198)
T ss_dssp CSEEEEEEEEESS
T ss_pred CCcceEEEEEECC
Confidence 9999999999975
No 14
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.87 E-value=1.7e-21 Score=184.57 Aligned_cols=83 Identities=20% Similarity=0.395 Sum_probs=76.2
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHH----HHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQIN----HIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQ 250 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~ 250 (403)
...+.++|||+|||+++|+++|+ ++|++||.|.+|.|+. ++.++|||||+|.+.++|.+||+.|||..|.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 44678999999999999999966 8999999999999875 7889999999999999999999999999999999
Q ss_pred EEEEeccCCC
Q psy4080 251 IRVDFSVTQR 260 (403)
Q Consensus 251 i~V~~a~~~~ 260 (403)
|.|.++....
T Consensus 82 l~v~~a~~~~ 91 (282)
T 3pgw_A 82 MRIQYAKTDS 91 (282)
T ss_pred EEEEEeccCc
Confidence 9999987654
No 15
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.87 E-value=1e-22 Score=179.01 Aligned_cols=137 Identities=19% Similarity=0.216 Sum_probs=112.3
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
.+.+.++|||+|||+++|+++|+++|..||.|.. .++.+..++.++|||||+|.+.++|.+|| +|++..|.|++|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEe
Confidence 4567899999999999999999999999998766 34455578899999999999999999999 599999999999999
Q ss_pred eccCCCCCCCCCCcCCCCCCcccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 255 FSVTQRAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 255 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
++..+.. .......+|||+||+..+++.+ |.+.|..++.|..+ ..++.++|+|||+|..
T Consensus 87 ~~~~~~~-------------~~~~~~~~l~v~nlp~~~t~~~---l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~ 145 (175)
T 1fje_B 87 KPKGRDS-------------KKVRAARTLLAKNLSFNITEDE---LKEVFEDALEIRLV-----SQDGKSKGIAYIEFKS 145 (175)
T ss_dssp CCCCSSC-------------STTGGGGEEEEESCCSSCCHHH---HHHHCTTCSEEEEE-----CSSSSCCSEEEEECSS
T ss_pred cCCCccc-------------cccccCCEEEEeCCCCCCCHHH---HHHHHHhcCeEEEe-----cCCCCCceEEEEEECC
Confidence 9866432 1123457899999998866655 55566666777655 5778899999999975
No 16
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.87 E-value=6.1e-22 Score=162.83 Aligned_cols=110 Identities=20% Similarity=0.272 Sum_probs=75.6
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy4080 178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSV 257 (403)
Q Consensus 178 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~ 257 (403)
...+|||+|||+++|+++|+++|++||.|.+|.|+.++ +.++|||||+|.+.++|++||+.|++..|+|+.|.|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 45789999999999999999999999999999999985 4589999999999999999999999999999999999997
Q ss_pred CCCCCCCCCCcCCCCCCcccCCCceeeeCCCCCccccch
Q psy4080 258 TQRAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEKHAIK 296 (403)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~l~~~~~~~~ 296 (403)
.+........ .......++||+||+...|++.
T Consensus 82 ~~~~~~~~~~-------~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 82 SRKEREAELG-------ARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCCC-----------------------------------
T ss_pred Cccccccccc-------cccCCCCceEeCCCCCCccccc
Confidence 6543322211 1222345799999998877653
No 17
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.87 E-value=1.2e-21 Score=183.95 Aligned_cols=129 Identities=22% Similarity=0.234 Sum_probs=111.9
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
...+.++|||+|||+++|+++|+++|+.||.|..|.|..+ +|||||+|.+.++|.+||..|+|..|.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 3455689999999999999999999999999999998643 6899999999999999999999999999999999
Q ss_pred eccCCCCCCCCCCcCCCCCCcccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 255 FSVTQRAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 255 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
++.+ ..+|||+||+..+++.++.++|..| |.|..|.++.+ .++.++|+|||+|..
T Consensus 92 ~a~~---------------------~~~l~v~nl~~~~t~~~l~~~F~~~---G~i~~v~i~~~-~~g~~~g~afV~f~~ 146 (261)
T 3sde_A 92 FATH---------------------GAALTVKNLSPVVSNELLEQAFSQF---GPVEKAVVVVD-DRGRATGKGFVEFAA 146 (261)
T ss_dssp ECCC---------------------SSEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEEE-TTSCEEEEEEEEESS
T ss_pred eccc---------------------CCcccccCCCCCCCHHHHHHHHHhc---CCeEEEEeeeC-CCCCcCcEEEEEeCC
Confidence 9842 4579999999987777766666555 56777888888 688899999999975
No 18
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.86 E-value=1.4e-21 Score=156.35 Aligned_cols=83 Identities=25% Similarity=0.404 Sum_probs=79.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy4080 176 PQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDF 255 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~ 255 (403)
...+++|||+|||+++|+++|+++|++||+|.+|.|+.|+.+|.++|||||+|.+.++|++||+.|||..|+|++|.|.+
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q psy4080 256 SVT 258 (403)
Q Consensus 256 a~~ 258 (403)
|+|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 864
No 19
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.86 E-value=2.2e-21 Score=178.68 Aligned_cols=148 Identities=18% Similarity=0.234 Sum_probs=112.7
Q ss_pred CCCCCCEEEEcCCCC-CCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy4080 175 NPQPSRCLGVFGLSI-YTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRV 253 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V 253 (403)
...++++|||+|||+ ++|+++|+++|++||.|.+|.|+.++ +|||||+|.+.++|.+||+.|++..|.|+.|.|
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345689999999999 99999999999999999999998874 689999999999999999999999999999999
Q ss_pred EeccCCCCCCCCCCc----------------CCCCC----CcccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEE
Q psy4080 254 DFSVTQRAHTPTPGI----------------YMGRP----TYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGV 313 (403)
Q Consensus 254 ~~a~~~~~~~~~~~~----------------~~~~~----~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v 313 (403)
.++.......+.... +.... ........+|||+||+..+++.++.++|+.|| ..|..|
T Consensus 105 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G--~~i~~v 182 (229)
T 2adc_A 105 TLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNG--GVVKGF 182 (229)
T ss_dssp ECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTS--CCEEEE
T ss_pred EEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcC--CCeeEE
Confidence 999765322211100 00000 00112357899999999887777666666664 055666
Q ss_pred EEeeeCCCCCCcceeeeeecc
Q psy4080 314 GAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 314 ~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.++.. .+++|||+|..
T Consensus 183 ~i~~~-----~~g~afV~f~~ 198 (229)
T 2adc_A 183 KFFQK-----DRKMALIQMGS 198 (229)
T ss_dssp EECSS-----STTCEEEEESS
T ss_pred EEEEC-----CCcEEEEEECC
Confidence 66532 36899999975
No 20
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.85 E-value=7e-21 Score=180.55 Aligned_cols=126 Identities=16% Similarity=0.170 Sum_probs=110.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy4080 178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSV 257 (403)
Q Consensus 178 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~ 257 (403)
+.++|||+|||+++|+++|+++|+.|| |..|.+ +.++|||||+|.+.++|.+|++.|+|..|.|+.|.|.++.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 93 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP 93 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC
Confidence 568999999999999999999999999 999887 4567899999999999999999999999999999999852
Q ss_pred CCCCCCCCCCcCCCCCCcccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 258 TQRAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
...+|||+||+..+++.++.++|..| |.|..+.++.+..++.++|+|||+|..
T Consensus 94 ---------------------~~~~l~v~nlp~~~t~~~l~~~f~~~---G~i~~~~i~~~~~~g~~~g~afV~f~~ 146 (284)
T 3smz_A 94 ---------------------TDALLCVANLPPSLTQQQFEELVRPF---GSLERCFLVYSERTGQSKGYGFAEYMK 146 (284)
T ss_dssp ---------------------CSCEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred ---------------------CCCEEEEcCCCCcCCHHHHHHHHHhc---CCeeEEEEEeeCCCCccceEEEEEECC
Confidence 23689999999988777766665555 567788889888899999999999964
No 21
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.84 E-value=5.5e-21 Score=171.51 Aligned_cols=143 Identities=18% Similarity=0.223 Sum_probs=111.4
Q ss_pred CCEEEEcCCCC-CCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy4080 179 SRCLGVFGLSI-YTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSV 257 (403)
Q Consensus 179 ~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~ 257 (403)
+++|||+|||+ ++|+++|+++|++||.|..|.|+.++ +|||||+|.+.++|.+||+.|+|..+.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 58999999999 99999999999999999999998764 6799999999999999999999999999999999997
Q ss_pred CCCCCCCCCCcC--------C----------C--CCCcccCCCceeeeCCCCCccccchHHHHHHhcC-CcceEEEEEEe
Q psy4080 258 TQRAHTPTPGIY--------M----------G--RPTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFG-EIATVVGVGAV 316 (403)
Q Consensus 258 ~~~~~~~~~~~~--------~----------~--~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg-~~g~v~~v~~~ 316 (403)
......+..... . + ..........+|+|+||+..+++.++.++|+.|| .+.. |.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~---v~i~ 154 (198)
T 1qm9_A 78 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKG---FKFF 154 (198)
T ss_dssp CCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCE---EEES
T ss_pred CCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceE---EEEE
Confidence 654322211100 0 0 0001112367899999999988888888888887 5554 4454
Q ss_pred eeCCCCCCcceeeeeecc
Q psy4080 317 TMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 317 ~~~~~~~~~g~~fv~f~~ 334 (403)
.+ .+|+|||+|..
T Consensus 155 ~~-----~~g~afV~f~~ 167 (198)
T 1qm9_A 155 QK-----DRKMALIQMGS 167 (198)
T ss_dssp ST-----TSSCEEEECSS
T ss_pred eC-----CCcEEEEEeCC
Confidence 32 27899999975
No 22
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.84 E-value=1.3e-20 Score=179.31 Aligned_cols=132 Identities=14% Similarity=0.114 Sum_probs=105.9
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy4080 174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRV 253 (403)
Q Consensus 174 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V 253 (403)
......++|||+|||+++|+++|+++|+.||+|..|.|+.++.+ ++|||||+|.+.++|.+|| .|++..|.|+.|.|
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v 112 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAI-TKTHKVVGQNEIIV 112 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHH-TTTTCEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHH-HhCCcEeCCcEEEE
Confidence 34567899999999999999999999999999999999998643 5899999999999999999 58999999999999
Q ss_pred EeccCCCCCCCCCCcCCCCCCcccCCCceeeeCCCCCccccchHHHHHHhcC-CcceEEEEEEeeeCCCCCCcceeeeee
Q psy4080 254 DFSVTQRAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFG-EIATVVGVGAVTMTEMSGNGRISPLQF 332 (403)
Q Consensus 254 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg-~~g~v~~v~~~~~~~~~~~~g~~fv~f 332 (403)
.++ ...+|||+||+..+++.++.++|..|| ++ ..|.++.+.. +.++|+|||+|
T Consensus 113 ~~~----------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i---~~v~i~~~~~-~~~~g~afV~f 166 (292)
T 2ghp_A 113 SHL----------------------TECTLWMTNFPPSYTQRNIRDLLQDINVVA---LSIRLPSLRF-NTSRRFAYIDV 166 (292)
T ss_dssp EEC----------------------CSCEEEEECCCTTCCHHHHHHHHHHTTCCC---CEEECC--------CCEEEEEC
T ss_pred EEC----------------------CCCEEEEECCCCCCCHHHHHHHHHHhCCCe---EEEEEEeCCC-CCcceEEEEEE
Confidence 985 256899999999988888887777776 55 4566776644 67899999999
Q ss_pred cc
Q psy4080 333 SG 334 (403)
Q Consensus 333 ~~ 334 (403)
..
T Consensus 167 ~~ 168 (292)
T 2ghp_A 167 TS 168 (292)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 23
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.84 E-value=1.9e-20 Score=152.63 Aligned_cols=84 Identities=21% Similarity=0.315 Sum_probs=79.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy4080 176 PQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDF 255 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~ 255 (403)
+.+.++|||+|||+++|+++|+++|++||.|.+|.|+.|+.|++++|||||+|.+.++|++||+.|||..|+|+.|.|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q psy4080 256 SVTQ 259 (403)
Q Consensus 256 a~~~ 259 (403)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8543
No 24
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.83 E-value=5.6e-21 Score=150.39 Aligned_cols=83 Identities=25% Similarity=0.368 Sum_probs=77.0
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCC-CeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhC-CceeCCeEEEEEec
Q psy4080 179 SRCLGVFGLSIYTTEQQINHIFSKYG-PVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACT-GMEIDGRQIRVDFS 256 (403)
Q Consensus 179 ~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~-g~~l~g~~i~V~~a 256 (403)
+++|||+|||+++||++|+++|++|| +|.+|.|++|+.|+.++|||||+|.+.++|++||+.|+ +..|+|++|.|.+|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47899999999999999999999999 89999999999999999999999999999999998874 56799999999999
Q ss_pred cCCCC
Q psy4080 257 VTQRA 261 (403)
Q Consensus 257 ~~~~~ 261 (403)
.+++.
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 76554
No 25
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=7.6e-20 Score=146.97 Aligned_cols=89 Identities=27% Similarity=0.484 Sum_probs=83.3
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
...+.++|||+|||+++|+++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCC
Q psy4080 255 FSVTQRAHT 263 (403)
Q Consensus 255 ~a~~~~~~~ 263 (403)
++.++....
T Consensus 91 ~a~~~~~~~ 99 (103)
T 2cq0_A 91 WAKPSTNSG 99 (103)
T ss_dssp ESSCCCCSC
T ss_pred ECCCCCCCC
Confidence 998766543
No 26
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.82 E-value=7.6e-20 Score=158.52 Aligned_cols=120 Identities=28% Similarity=0.364 Sum_probs=102.1
Q ss_pred CCCCceeeeechhhHHHHHHHHHhHhhh---------------------hCCCCCCCCCCEEEEcCCCCCCcHHHHHHHh
Q psy4080 142 YGGRGKIIIAVVTEVEEEAEATAMVEEF---------------------ADGRENPQPSRCLGVFGLSIYTTEQQINHIF 200 (403)
Q Consensus 142 ~~g~g~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F 200 (403)
..|++|+.|....+++.+.......... ..........++|||+|||+++|+++|+++|
T Consensus 12 ~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F 91 (158)
T 2kn4_A 12 LKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRVF 91 (158)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHHH
T ss_pred ccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 4688999999999998887664421100 0122234557899999999999999999999
Q ss_pred hcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccCCCC
Q psy4080 201 SKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVTQRA 261 (403)
Q Consensus 201 ~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~~~~~ 261 (403)
++||.|..|.|+.++.+|.++|||||+|.+.++|++||+.|||..|.|++|.|.++.++..
T Consensus 92 ~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 92 EKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp HHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred HhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 9999999999999989999999999999999999999999999999999999999977544
No 27
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.82 E-value=7e-20 Score=142.31 Aligned_cols=83 Identities=31% Similarity=0.408 Sum_probs=77.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy4080 177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFS 256 (403)
Q Consensus 177 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a 256 (403)
.+.++|||+|||.++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|++.||+..++|+.|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45689999999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred cCC
Q psy4080 257 VTQ 259 (403)
Q Consensus 257 ~~~ 259 (403)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 754
No 28
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.82 E-value=1.1e-19 Score=139.82 Aligned_cols=82 Identities=29% Similarity=0.505 Sum_probs=78.2
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q psy4080 179 SRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVT 258 (403)
Q Consensus 179 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~~ 258 (403)
+.+|||+|||+++|+++|+++|++||+|..|.++.++.++.++|||||+|.+.++|++|++.|||..|+|+.|.|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred CC
Q psy4080 259 QR 260 (403)
Q Consensus 259 ~~ 260 (403)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 29
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.82 E-value=2.1e-20 Score=148.23 Aligned_cols=83 Identities=27% Similarity=0.409 Sum_probs=77.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCC--eEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCc----eeCCe
Q psy4080 176 PQPSRCLGVFGLSIYTTEQQINHIFSKYGP--VERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGM----EIDGR 249 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~--i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~----~l~g~ 249 (403)
...-.||||+|||+++|+++|+++|++||. |.+|.|++|+.||.++|||||+|.+.++|++||+.||+. .|+|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 455689999999999999999999999995 679999999999999999999999999999999999996 59999
Q ss_pred EEEEEeccC
Q psy4080 250 QIRVDFSVT 258 (403)
Q Consensus 250 ~i~V~~a~~ 258 (403)
+|.|.||+.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999864
No 30
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=143.06 Aligned_cols=85 Identities=29% Similarity=0.490 Sum_probs=81.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy4080 177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFS 256 (403)
Q Consensus 177 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a 256 (403)
.+.++|||+|||.++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy4080 257 VTQRA 261 (403)
Q Consensus 257 ~~~~~ 261 (403)
..+..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 77654
No 31
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=144.13 Aligned_cols=88 Identities=25% Similarity=0.394 Sum_probs=81.9
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
...+.++|||+|||.++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+ |++..|+|+.|.|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 44677999999999999999999999999999999999999999999999999999999999997 99999999999999
Q ss_pred eccCCCCCC
Q psy4080 255 FSVTQRAHT 263 (403)
Q Consensus 255 ~a~~~~~~~ 263 (403)
++.++....
T Consensus 85 ~a~~~~~~~ 93 (99)
T 2dgs_A 85 RAEPRDSKS 93 (99)
T ss_dssp ECCCCCCCC
T ss_pred ECCCCcccC
Confidence 998765533
No 32
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.7e-19 Score=143.83 Aligned_cols=87 Identities=30% Similarity=0.437 Sum_probs=82.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy4080 176 PQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDF 255 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~ 255 (403)
..+.++|||+|||+++|+++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|.+||+.||+..|+|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45679999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q psy4080 256 SVTQRAH 262 (403)
Q Consensus 256 a~~~~~~ 262 (403)
+.++...
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9876543
No 33
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.81 E-value=1.3e-19 Score=148.61 Aligned_cols=91 Identities=22% Similarity=0.361 Sum_probs=83.8
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy4080 174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRV 253 (403)
Q Consensus 174 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V 253 (403)
....+.++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred EeccCCCCCCC
Q psy4080 254 DFSVTQRAHTP 264 (403)
Q Consensus 254 ~~a~~~~~~~~ 264 (403)
.++.++....+
T Consensus 100 ~~a~~~~~~~~ 110 (115)
T 2cpz_A 100 QLKRSKNDSKS 110 (115)
T ss_dssp ECCCCSCCCCC
T ss_pred EEcCCCCcCCC
Confidence 99987665443
No 34
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=7.9e-20 Score=146.90 Aligned_cols=90 Identities=33% Similarity=0.499 Sum_probs=83.3
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy4080 174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRV 253 (403)
Q Consensus 174 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V 253 (403)
....+.++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34466799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCC
Q psy4080 254 DFSVTQRAHT 263 (403)
Q Consensus 254 ~~a~~~~~~~ 263 (403)
.++.......
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2dnm_A 88 QVARYGRRDL 97 (103)
T ss_dssp EECSSCCSCC
T ss_pred EECCcCCCCC
Confidence 9998765433
No 35
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.81 E-value=1.4e-19 Score=140.05 Aligned_cols=82 Identities=34% Similarity=0.529 Sum_probs=78.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy4080 176 PQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDF 255 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~ 255 (403)
..+.++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|++.|||..|+|+.|.|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q psy4080 256 SV 257 (403)
Q Consensus 256 a~ 257 (403)
|+
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 36
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.81 E-value=6.2e-19 Score=144.51 Aligned_cols=89 Identities=29% Similarity=0.404 Sum_probs=83.2
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy4080 174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRV 253 (403)
Q Consensus 174 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V 253 (403)
....+.++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.|++..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34567899999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EeccCCCCC
Q psy4080 254 DFSVTQRAH 262 (403)
Q Consensus 254 ~~a~~~~~~ 262 (403)
.++..+...
T Consensus 90 ~~a~~~~~~ 98 (115)
T 2dgo_A 90 NWATRKPPA 98 (115)
T ss_dssp EESSCCCCC
T ss_pred EEccCCCCC
Confidence 999876543
No 37
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.2e-19 Score=145.55 Aligned_cols=89 Identities=33% Similarity=0.492 Sum_probs=83.0
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
...+.++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCC
Q psy4080 255 FSVTQRAHT 263 (403)
Q Consensus 255 ~a~~~~~~~ 263 (403)
++.++....
T Consensus 88 ~a~~~~~~~ 96 (102)
T 2cqb_A 88 LAKPMRIKE 96 (102)
T ss_dssp ECCCCCCCC
T ss_pred eCCCCCCCC
Confidence 998766543
No 38
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2e-19 Score=142.11 Aligned_cols=85 Identities=56% Similarity=1.026 Sum_probs=80.3
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy4080 174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRV 253 (403)
Q Consensus 174 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V 253 (403)
..+.+.++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccC
Q psy4080 254 DFSVT 258 (403)
Q Consensus 254 ~~a~~ 258 (403)
.+++.
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99853
No 39
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2e-19 Score=145.02 Aligned_cols=88 Identities=26% Similarity=0.355 Sum_probs=82.6
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy4080 174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRV 253 (403)
Q Consensus 174 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V 253 (403)
....+.++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34567899999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EeccCCCC
Q psy4080 254 DFSVTQRA 261 (403)
Q Consensus 254 ~~a~~~~~ 261 (403)
.++.++..
T Consensus 90 ~~a~~~~~ 97 (105)
T 1x5u_A 90 NKASAHNK 97 (105)
T ss_dssp EETTTTSC
T ss_pred EECCCCCc
Confidence 99977654
No 40
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.81 E-value=2.4e-20 Score=146.28 Aligned_cols=82 Identities=20% Similarity=0.261 Sum_probs=73.0
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCC--CeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy4080 180 RCLGVFGLSIYTTEQQINHIFSKYG--PVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSV 257 (403)
Q Consensus 180 ~~l~V~nLp~~~te~~L~~~F~~~G--~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~ 257 (403)
.+|||+|||+++|+++|+++|++|| .|.+|.|+.++.+|.++|||||+|.+.++|++||+.|||..|+|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999999999999999999987
Q ss_pred CCCC
Q psy4080 258 TQRA 261 (403)
Q Consensus 258 ~~~~ 261 (403)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 6544
No 41
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.3e-19 Score=143.50 Aligned_cols=86 Identities=26% Similarity=0.410 Sum_probs=81.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEE-EEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy4080 177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERV-EVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDF 255 (403)
Q Consensus 177 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v-~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~ 255 (403)
.+.++|||+|||+++|+++|+++|++||.|..| .|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467899999999999999999999999999999 9999989999999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q psy4080 256 SVTQRAH 262 (403)
Q Consensus 256 a~~~~~~ 262 (403)
+.++...
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9776543
No 42
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.2e-19 Score=142.87 Aligned_cols=86 Identities=26% Similarity=0.353 Sum_probs=80.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCC---CCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy4080 177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAK---TGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRV 253 (403)
Q Consensus 177 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~---tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V 253 (403)
.+.++|||+|||+++|+++|+++|++||+|..|.|+.++. |+.++|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4578999999999999999999999999999999999876 6799999999999999999999999999999999999
Q ss_pred EeccCCCCC
Q psy4080 254 DFSVTQRAH 262 (403)
Q Consensus 254 ~~a~~~~~~ 262 (403)
.++..+...
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999776543
No 43
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.9e-19 Score=145.46 Aligned_cols=89 Identities=26% Similarity=0.512 Sum_probs=82.9
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhC------CceeC
Q psy4080 174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACT------GMEID 247 (403)
Q Consensus 174 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~------g~~l~ 247 (403)
....+.++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.|| +..|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 345668899999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred CeEEEEEeccCCCCC
Q psy4080 248 GRQIRVDFSVTQRAH 262 (403)
Q Consensus 248 g~~i~V~~a~~~~~~ 262 (403)
|+.|.|.++.++...
T Consensus 90 g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEA 104 (111)
T ss_dssp SCEEEEECCCCCCCC
T ss_pred CEEEEEEECCCCccC
Confidence 999999999876543
No 44
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.80 E-value=3.5e-19 Score=143.51 Aligned_cols=88 Identities=26% Similarity=0.349 Sum_probs=81.3
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC---eEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDG---RQI 251 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g---~~i 251 (403)
...+.++|||+|||+++|+++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||+.||+..+.| +.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34568999999999999999999999999999999999986 89999999999999999999999999999988 999
Q ss_pred EEEeccCCCCCC
Q psy4080 252 RVDFSVTQRAHT 263 (403)
Q Consensus 252 ~V~~a~~~~~~~ 263 (403)
.|.++..+....
T Consensus 90 ~V~~a~~~~~~~ 101 (105)
T 2dnh_A 90 VVKFADTDKESG 101 (105)
T ss_dssp EEEESCSSCCCS
T ss_pred EEEECccCcccC
Confidence 999998766543
No 45
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=3.5e-19 Score=142.26 Aligned_cols=85 Identities=24% Similarity=0.389 Sum_probs=80.1
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
...+.++|||+|||+++|+++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|.+||+.||+..|+|+.|.|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred eccCCC
Q psy4080 255 FSVTQR 260 (403)
Q Consensus 255 ~a~~~~ 260 (403)
++.++.
T Consensus 92 ~a~~~~ 97 (100)
T 2do4_A 92 ISNSGP 97 (100)
T ss_dssp ECCCCS
T ss_pred ECCCCC
Confidence 997654
No 46
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.80 E-value=2.1e-19 Score=142.56 Aligned_cols=83 Identities=29% Similarity=0.524 Sum_probs=79.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy4080 178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSV 257 (403)
Q Consensus 178 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~ 257 (403)
++++|||+|||.++++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|++.|||..|+|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCC
Q psy4080 258 TQR 260 (403)
Q Consensus 258 ~~~ 260 (403)
++.
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
No 47
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.9e-19 Score=145.39 Aligned_cols=86 Identities=27% Similarity=0.489 Sum_probs=81.1
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
...+.++|||+|||.++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCC
Q psy4080 255 FSVTQR 260 (403)
Q Consensus 255 ~a~~~~ 260 (403)
++.++.
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 997654
No 48
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2.4e-19 Score=141.41 Aligned_cols=83 Identities=28% Similarity=0.460 Sum_probs=79.0
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
...+.++|||+|||+++|+++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|.+||+.||+..|+|+.|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 44667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecc
Q psy4080 255 FSV 257 (403)
Q Consensus 255 ~a~ 257 (403)
+|+
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 974
No 49
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.9e-19 Score=144.34 Aligned_cols=88 Identities=47% Similarity=0.587 Sum_probs=82.6
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
...+.++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.||+..|+|+.|.|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCC
Q psy4080 255 FSVTQRAH 262 (403)
Q Consensus 255 ~a~~~~~~ 262 (403)
++.++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 1x5s_A 88 QAGKSSDN 95 (102)
T ss_dssp EEECCCCC
T ss_pred ECCCCCCC
Confidence 99876543
No 50
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=3.3e-19 Score=144.13 Aligned_cols=89 Identities=24% Similarity=0.416 Sum_probs=82.5
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEee-CCCCCcceEEEEEecCHHHHHHHHHHh-CCceeCCeEE
Q psy4080 174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVID-AKTGRSRGFCFVYFESRDDAAAAKDAC-TGMEIDGRQI 251 (403)
Q Consensus 174 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d-~~tg~~rG~afV~f~~~~~a~~Al~~l-~g~~l~g~~i 251 (403)
....+.++|||+|||+++|+++|+++|++||.|..|.|+.+ +.++.++|||||+|.+.++|.+||+.| |+..|.|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34566799999999999999999999999999999999998 789999999999999999999999999 9999999999
Q ss_pred EEEeccCCCCC
Q psy4080 252 RVDFSVTQRAH 262 (403)
Q Consensus 252 ~V~~a~~~~~~ 262 (403)
.|.++.++...
T Consensus 90 ~v~~a~~~~~~ 100 (107)
T 2cph_A 90 VLEWADSEVTV 100 (107)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeCCCCCCC
Confidence 99999876543
No 51
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=4.6e-19 Score=142.38 Aligned_cols=87 Identities=23% Similarity=0.387 Sum_probs=80.9
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
...+.++|||+|||+++|+++|+++|++||.|..|.|+.+ ++.++|||||+|.+.++|.+||+.||+..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3457899999999999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred eccCCCCCC
Q psy4080 255 FSVTQRAHT 263 (403)
Q Consensus 255 ~a~~~~~~~ 263 (403)
++.++....
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2d9p_A 89 LAQRKEERQ 97 (103)
T ss_dssp ECSSCCCCC
T ss_pred EecccccCC
Confidence 998766543
No 52
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.80 E-value=5.7e-19 Score=141.87 Aligned_cols=85 Identities=27% Similarity=0.463 Sum_probs=79.8
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
...+.++|||+|||+++|+++|+++|++|| |..|.|+.++.++.++|||||+|.+.++|++|| .||+..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 445679999999999999999999999997 999999999999999999999999999999999 899999999999999
Q ss_pred eccCCCC
Q psy4080 255 FSVTQRA 261 (403)
Q Consensus 255 ~a~~~~~ 261 (403)
++.++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2dng_A 89 IAEGRKQ 95 (103)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 9977654
No 53
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.80 E-value=3.2e-19 Score=142.27 Aligned_cols=85 Identities=26% Similarity=0.396 Sum_probs=80.3
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEE--------EEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCc
Q psy4080 173 RENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVER--------VEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGM 244 (403)
Q Consensus 173 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~--------v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~ 244 (403)
...+.+.++|||+|||.++|+++|+++|++||.|.. |.|+.++.+|.++|||||+|.+.++|++||+.|||.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 345677899999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred eeCCeEEEEEecc
Q psy4080 245 EIDGRQIRVDFSV 257 (403)
Q Consensus 245 ~l~g~~i~V~~a~ 257 (403)
.|.|+.|.|.+|+
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999873
No 54
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=3.2e-19 Score=142.14 Aligned_cols=86 Identities=21% Similarity=0.374 Sum_probs=80.7
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeE-EEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeE---
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVE-RVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQ--- 250 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~-~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~--- 250 (403)
...+.++|||+|||+++|+++|+++|++||.|. .|.|+.++.++.++|||||+|.+.++|++||+.|||..|.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 345679999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred -EEEEeccCCC
Q psy4080 251 -IRVDFSVTQR 260 (403)
Q Consensus 251 -i~V~~a~~~~ 260 (403)
|+|.+|.+..
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 9999986643
No 55
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.79 E-value=8.7e-20 Score=146.09 Aligned_cols=81 Identities=26% Similarity=0.369 Sum_probs=77.8
Q ss_pred CCCEEEEcCCCC------CCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC-eE
Q psy4080 178 PSRCLGVFGLSI------YTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDG-RQ 250 (403)
Q Consensus 178 ~~~~l~V~nLp~------~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g-~~ 250 (403)
..++|||+|||+ ++++++|+++|++||.|.+|.|+.++.||.++|||||+|.+.++|++||+.|||..|+| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 468999999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred EEEEeccC
Q psy4080 251 IRVDFSVT 258 (403)
Q Consensus 251 i~V~~a~~ 258 (403)
|.|.++.+
T Consensus 85 l~V~~a~~ 92 (100)
T 3ns6_A 85 LFLYTMKD 92 (100)
T ss_dssp CEEEESHH
T ss_pred EEEEECch
Confidence 99999864
No 56
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.79 E-value=3.7e-19 Score=144.70 Aligned_cols=87 Identities=30% Similarity=0.507 Sum_probs=81.5
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy4080 174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRV 253 (403)
Q Consensus 174 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V 253 (403)
....+.++|||+|||.++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.|||..|+|+.|.|
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCC
Q psy4080 254 DFSVTQR 260 (403)
Q Consensus 254 ~~a~~~~ 260 (403)
.++.++.
T Consensus 101 ~~a~~~~ 107 (110)
T 1oo0_B 101 DWCFVKG 107 (110)
T ss_dssp EESEESS
T ss_pred EEcccCC
Confidence 9997654
No 57
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.79 E-value=2e-19 Score=150.87 Aligned_cols=88 Identities=61% Similarity=1.120 Sum_probs=82.6
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q psy4080 173 RENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIR 252 (403)
Q Consensus 173 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~ 252 (403)
...+.+.++|||+|||+++|+++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCC
Q psy4080 253 VDFSVTQR 260 (403)
Q Consensus 253 V~~a~~~~ 260 (403)
|.++.++.
T Consensus 120 V~~a~~~~ 127 (129)
T 2kxn_B 120 VDFSITKR 127 (129)
T ss_dssp ESCCSSSS
T ss_pred EEEecCCC
Confidence 99997654
No 58
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.79 E-value=5e-19 Score=143.74 Aligned_cols=86 Identities=28% Similarity=0.516 Sum_probs=81.2
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy4080 174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRV 253 (403)
Q Consensus 174 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V 253 (403)
....+.++|||+|||+.+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.|+|..|+|+.|.|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34566799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCC
Q psy4080 254 DFSVTQ 259 (403)
Q Consensus 254 ~~a~~~ 259 (403)
.++.++
T Consensus 101 ~~a~~k 106 (108)
T 2jrs_A 101 GHVTER 106 (108)
T ss_dssp ECSCSS
T ss_pred EEcccC
Confidence 998664
No 59
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.79 E-value=3.2e-19 Score=144.00 Aligned_cols=88 Identities=19% Similarity=0.272 Sum_probs=82.0
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCcee---CCeE
Q psy4080 174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEI---DGRQ 250 (403)
Q Consensus 174 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l---~g~~ 250 (403)
....+.++|||+|||.++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.||+..+ .|+.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 3456679999999999999999999999999999999999999999999999999999999999999999987 8999
Q ss_pred EEEEeccCCCC
Q psy4080 251 IRVDFSVTQRA 261 (403)
Q Consensus 251 i~V~~a~~~~~ 261 (403)
|.|.++.++..
T Consensus 88 l~v~~a~~~~~ 98 (106)
T 2dgp_A 88 IQVKPADSESR 98 (106)
T ss_dssp CEEEECCCCSC
T ss_pred EEEEECCcccc
Confidence 99999977654
No 60
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.79 E-value=8.4e-19 Score=141.77 Aligned_cols=82 Identities=27% Similarity=0.455 Sum_probs=78.1
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
...+.++|||+|||+.+|+++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||+.||+..|+|+.|.|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34667999999999999999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred ecc
Q psy4080 255 FSV 257 (403)
Q Consensus 255 ~a~ 257 (403)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 984
No 61
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.79 E-value=5.5e-19 Score=137.43 Aligned_cols=83 Identities=25% Similarity=0.435 Sum_probs=77.8
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCC-cceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy4080 178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGR-SRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFS 256 (403)
Q Consensus 178 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~-~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a 256 (403)
..++|||+|||.++|+++|+++|++||.|..|.|+.++.++. ++|||||+|.+.++|++|++.|||..++|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999999988766 9999999999999999999999999999999999999
Q ss_pred cCCC
Q psy4080 257 VTQR 260 (403)
Q Consensus 257 ~~~~ 260 (403)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 62
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.8e-19 Score=144.22 Aligned_cols=87 Identities=22% Similarity=0.378 Sum_probs=81.7
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeE--------EEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCcee
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVE--------RVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEI 246 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~--------~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l 246 (403)
...+.++|||+|||+++|+++|+++|++||.|. .|.|+.++.++.++|||||+|.+.++|++||+.||+..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 446789999999999999999999999999999 699999999999999999999999999999999999999
Q ss_pred CCeEEEEEeccCCCC
Q psy4080 247 DGRQIRVDFSVTQRA 261 (403)
Q Consensus 247 ~g~~i~V~~a~~~~~ 261 (403)
.|+.|.|.++.++..
T Consensus 91 ~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 QGSKLKVSLARKKPP 105 (113)
T ss_dssp TTEECEEECSSCCCC
T ss_pred CCCEEEEEECCCCCC
Confidence 999999999977654
No 63
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-18 Score=143.22 Aligned_cols=86 Identities=29% Similarity=0.412 Sum_probs=80.4
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
...+.++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.|++ .|.|+.|.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 445679999999999999999999999999999999999999999999999999999999999999998 8999999999
Q ss_pred eccCCCC
Q psy4080 255 FSVTQRA 261 (403)
Q Consensus 255 ~a~~~~~ 261 (403)
++.....
T Consensus 92 ~a~~~~~ 98 (116)
T 2cqd_A 92 LAYLGAK 98 (116)
T ss_dssp ESTTTCC
T ss_pred EcccCCC
Confidence 9976543
No 64
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.79 E-value=9.2e-19 Score=136.09 Aligned_cols=81 Identities=31% Similarity=0.482 Sum_probs=76.1
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
...+.++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+ +++..|+|+.|.|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 44677999999999999999999999999999999999999999999999999999999999995 58889999999998
Q ss_pred ec
Q psy4080 255 FS 256 (403)
Q Consensus 255 ~a 256 (403)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 65
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.8e-18 Score=138.84 Aligned_cols=87 Identities=25% Similarity=0.516 Sum_probs=79.3
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy4080 174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRV 253 (403)
Q Consensus 174 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V 253 (403)
....+.++|||+|||+++|+++|+++|++||.|..|.|+.++. .++|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3456679999999999999999999999999999999998854 38999999999999999999999999999999999
Q ss_pred EeccCCCCC
Q psy4080 254 DFSVTQRAH 262 (403)
Q Consensus 254 ~~a~~~~~~ 262 (403)
.++.++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cq3_A 88 NNATARVMT 96 (103)
T ss_dssp EECCSSCCC
T ss_pred EEcccCCCC
Confidence 999876543
No 66
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=7.6e-19 Score=141.41 Aligned_cols=86 Identities=21% Similarity=0.301 Sum_probs=80.0
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKT-GRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRV 253 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~t-g~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V 253 (403)
...+.++|||+|||+++|+++|+++|++|| |..|.|+.++.+ +.++|||||+|.+.++|++|| .||+..|.|+.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 345679999999999999999999999999 999999999888 999999999999999999999 99999999999999
Q ss_pred EeccCCCCC
Q psy4080 254 DFSVTQRAH 262 (403)
Q Consensus 254 ~~a~~~~~~ 262 (403)
.++.++...
T Consensus 89 ~~a~~~~~~ 97 (104)
T 1wi8_A 89 DVADQAQDK 97 (104)
T ss_dssp EECCCCCCC
T ss_pred EEccCCCCC
Confidence 999876543
No 67
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.78 E-value=1.4e-18 Score=147.31 Aligned_cols=89 Identities=30% Similarity=0.521 Sum_probs=83.2
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
.....++|||+|||.++|+++|+++|+.||.|+.|.|+.++.++.++|||||+|.+.++|.+||+.||+..|.|+.|.|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCC
Q psy4080 255 FSVTQRAHT 263 (403)
Q Consensus 255 ~a~~~~~~~ 263 (403)
++.......
T Consensus 118 ~a~~~~~~~ 126 (139)
T 1u6f_A 118 LAASGHQRP 126 (139)
T ss_dssp ESSCCCCCC
T ss_pred ECCCCCCCC
Confidence 998765543
No 68
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=6.2e-19 Score=141.82 Aligned_cols=86 Identities=24% Similarity=0.419 Sum_probs=80.7
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhc-CCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCce-eCCeEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSK-YGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGME-IDGRQIR 252 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~-l~g~~i~ 252 (403)
...+.++|||+|||+++|+++|+++|++ ||.|..|.|+.++ ++.++|||||+|.+.++|.+||+.|++.. |+|+.|.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 4566799999999999999999999999 9999999999997 99999999999999999999999999999 9999999
Q ss_pred EEeccCCCC
Q psy4080 253 VDFSVTQRA 261 (403)
Q Consensus 253 V~~a~~~~~ 261 (403)
|.++.++..
T Consensus 84 v~~a~~~~~ 92 (104)
T 2dhg_A 84 LSVAIPKAS 92 (104)
T ss_dssp CCBCCCCCS
T ss_pred EEEccCCCc
Confidence 999976554
No 69
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.9e-18 Score=138.75 Aligned_cols=86 Identities=33% Similarity=0.499 Sum_probs=78.4
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy4080 174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRV 253 (403)
Q Consensus 174 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V 253 (403)
....+.++|||+|||+++|+++|+++|++||.|..|.|+.++.+ ++|||||+|.+.++|.+||+.||+..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 34566799999999999999999999999999999999988543 6899999999999999999999999999999999
Q ss_pred EeccCCCC
Q psy4080 254 DFSVTQRA 261 (403)
Q Consensus 254 ~~a~~~~~ 261 (403)
.++.++..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cqi_A 88 NWATTPSS 95 (103)
T ss_dssp EECCCTTC
T ss_pred EECCCCcc
Confidence 99987554
No 70
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.78 E-value=9.1e-19 Score=144.04 Aligned_cols=85 Identities=31% Similarity=0.489 Sum_probs=80.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy4080 176 PQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDF 255 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~ 255 (403)
..+.++|||+|||.++|+++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||+.|||..|+|+.|.|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3567899999999999999999999999999999999997 999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q psy4080 256 SVTQRA 261 (403)
Q Consensus 256 a~~~~~ 261 (403)
+..+..
T Consensus 83 a~~~~~ 88 (116)
T 2fy1_A 83 AKKPSF 88 (116)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 986654
No 71
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.78 E-value=1.6e-18 Score=150.02 Aligned_cols=88 Identities=36% Similarity=0.509 Sum_probs=82.4
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy4080 174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRV 253 (403)
Q Consensus 174 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V 253 (403)
....+.++|||+|||+++|+++|+++|++||+|+.|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34456799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCC
Q psy4080 254 DFSVTQRA 261 (403)
Q Consensus 254 ~~a~~~~~ 261 (403)
.++.+...
T Consensus 114 ~~a~~~~~ 121 (156)
T 1h2v_Z 114 DWDAGFKE 121 (156)
T ss_dssp EEESCCCT
T ss_pred EECCCCCC
Confidence 99976544
No 72
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=7e-19 Score=141.82 Aligned_cols=86 Identities=28% Similarity=0.367 Sum_probs=80.9
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
...+.++|||+|||+++|+++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+. ++..|+|+.|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 456779999999999999999999999999999999999999999999999999999999999988 9999999999999
Q ss_pred eccCCCC
Q psy4080 255 FSVTQRA 261 (403)
Q Consensus 255 ~a~~~~~ 261 (403)
++.++..
T Consensus 91 ~a~~~~~ 97 (105)
T 2dh8_A 91 PCTPRGM 97 (105)
T ss_dssp CSCCSSC
T ss_pred EccCCCC
Confidence 9976654
No 73
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.78 E-value=5.5e-19 Score=147.25 Aligned_cols=89 Identities=26% Similarity=0.476 Sum_probs=82.9
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy4080 174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRV 253 (403)
Q Consensus 174 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V 253 (403)
....+.++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 34556789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EeccCCCCC
Q psy4080 254 DFSVTQRAH 262 (403)
Q Consensus 254 ~~a~~~~~~ 262 (403)
.++.++...
T Consensus 97 ~~a~~~~~~ 105 (126)
T 3ex7_B 97 DWCFVRGPP 105 (126)
T ss_dssp EESEESSSC
T ss_pred EEecCCCCC
Confidence 999876543
No 74
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.78 E-value=9.1e-19 Score=138.36 Aligned_cols=82 Identities=24% Similarity=0.415 Sum_probs=77.2
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
...+.++|||+|||+++++++|+++|++||+|..|.|+.++. +.++|||||+|.+.++|.+||+.||+..|+|+.|.|.
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 345678999999999999999999999999999999999865 9999999999999999999999999999999999999
Q ss_pred ecc
Q psy4080 255 FSV 257 (403)
Q Consensus 255 ~a~ 257 (403)
++.
T Consensus 91 ~a~ 93 (95)
T 2ywk_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred EcC
Confidence 985
No 75
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.78 E-value=1.1e-18 Score=136.08 Aligned_cols=80 Identities=25% Similarity=0.401 Sum_probs=76.7
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q psy4080 179 SRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVT 258 (403)
Q Consensus 179 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~~ 258 (403)
.++|||+|||+++|+++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++|+ .||+..|+|+.|.|.++.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 479999999999999999999999999999999999889999999999999999999999 9999999999999999865
Q ss_pred C
Q psy4080 259 Q 259 (403)
Q Consensus 259 ~ 259 (403)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 76
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.3e-18 Score=138.07 Aligned_cols=83 Identities=17% Similarity=0.222 Sum_probs=76.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHH----HHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q psy4080 176 PQPSRCLGVFGLSIYTTEQQIN----HIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQI 251 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i 251 (403)
....++|||+|||+++++++|+ ++|++||+|.+|.|+.++.+ +|||||+|.+.++|++||+.|||..|+|+.|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3456899999999999999999 99999999999999998765 8899999999999999999999999999999
Q ss_pred EEEeccCCCC
Q psy4080 252 RVDFSVTQRA 261 (403)
Q Consensus 252 ~V~~a~~~~~ 261 (403)
+|.+|.+...
T Consensus 83 ~V~~a~~~~~ 92 (96)
T 2dgx_A 83 LVSLATGASG 92 (96)
T ss_dssp EEEECCCSSC
T ss_pred EEEEcCCCCC
Confidence 9999976543
No 77
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=4.9e-19 Score=141.71 Aligned_cols=100 Identities=27% Similarity=0.313 Sum_probs=83.8
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q psy4080 180 RCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVTQ 259 (403)
Q Consensus 180 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~~~ 259 (403)
++|||+|||+++|+++|+++|++||+|..|.|+.+ ++|||||+|.+.++|++|++.|++..++|+.|.|.++.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 48999999999999999999999999999999876 6889999999999999999999999999999999999876
Q ss_pred CCCCCCCCcCCCCCCcccCCCceeeeCCCC
Q psy4080 260 RAHTPTPGIYMGRPTYEQLNNTQSELGSLL 289 (403)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~vg~l~ 289 (403)
....... ..........++|||+|+
T Consensus 76 ~~~~~~~-----~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFD-----RPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCC-----SCCCSCCCCSCCCSCCCC
T ss_pred CCcccCC-----CCCccccCCCceecCCCC
Confidence 6432211 111222345679999985
No 78
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=5.6e-18 Score=138.50 Aligned_cols=85 Identities=24% Similarity=0.278 Sum_probs=79.2
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
...+.++|||+|||+++|+++|+++|.+||.|..|.|+.++ ++.++|||||+|.+.++|++||+.||+..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 34567899999999999999999999999999999999986 69999999999999999999999999999999999999
Q ss_pred eccCCC
Q psy4080 255 FSVTQR 260 (403)
Q Consensus 255 ~a~~~~ 260 (403)
++....
T Consensus 90 ~a~~~~ 95 (114)
T 2do0_A 90 MDERAL 95 (114)
T ss_dssp ECSCCC
T ss_pred EcccCC
Confidence 987543
No 79
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=6.9e-19 Score=139.96 Aligned_cols=84 Identities=20% Similarity=0.247 Sum_probs=79.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy4080 176 PQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDF 255 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~ 255 (403)
....++|||+|||+++|+++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 35568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q psy4080 256 SVTQ 259 (403)
Q Consensus 256 a~~~ 259 (403)
+..+
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8643
No 80
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.77 E-value=7.6e-19 Score=144.66 Aligned_cols=83 Identities=25% Similarity=0.402 Sum_probs=78.4
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
...+.++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|+|.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecc
Q psy4080 255 FSV 257 (403)
Q Consensus 255 ~a~ 257 (403)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 873
No 81
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.77 E-value=1.3e-18 Score=141.54 Aligned_cols=87 Identities=28% Similarity=0.371 Sum_probs=76.5
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy4080 174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRV 253 (403)
Q Consensus 174 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V 253 (403)
....+.++|||+|||+++|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||+.+ +..|+|+.|.|
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V 98 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDP 98 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEE
Confidence 44566799999999999999999999999999999999999999999999999999999999999875 58999999999
Q ss_pred EeccCCCC
Q psy4080 254 DFSVTQRA 261 (403)
Q Consensus 254 ~~a~~~~~ 261 (403)
.++.++..
T Consensus 99 ~~a~~~~~ 106 (109)
T 2rs2_A 99 KVAFPRRA 106 (109)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99976543
No 82
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=150.38 Aligned_cols=81 Identities=20% Similarity=0.305 Sum_probs=77.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCC--CeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy4080 178 PSRCLGVFGLSIYTTEQQINHIFSKYG--PVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDF 255 (403)
Q Consensus 178 ~~~~l~V~nLp~~~te~~L~~~F~~~G--~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~ 255 (403)
..++|||+|||+++|+++|+++|+.|| .|.+|.|+.|+.+|.++|||||+|.+.++|++||+.|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q psy4080 256 SVT 258 (403)
Q Consensus 256 a~~ 258 (403)
+.+
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 854
No 83
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=9.8e-19 Score=140.48 Aligned_cols=82 Identities=20% Similarity=0.299 Sum_probs=73.9
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCC--ceeCCeEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTG--MEIDGRQIR 252 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g--~~l~g~~i~ 252 (403)
.+.+.++|||+|||+++||++|+++|++||.|.+|.|+.+ ||||||+|.+.++|++||+.|++ ..|.|++|.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4567899999999999999999999999999999999865 68999999999999999998864 789999999
Q ss_pred EEeccCCCCC
Q psy4080 253 VDFSVTQRAH 262 (403)
Q Consensus 253 V~~a~~~~~~ 262 (403)
|.+|..+...
T Consensus 86 V~~A~~~~~~ 95 (105)
T 1sjq_A 86 IQFSNHKELK 95 (105)
T ss_dssp BCCCSSSSCC
T ss_pred EEEcCCCCCC
Confidence 9999776543
No 84
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.77 E-value=2.4e-18 Score=135.10 Aligned_cols=83 Identities=25% Similarity=0.330 Sum_probs=77.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy4080 176 PQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDF 255 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~ 255 (403)
..+.++|||+|||+++|+++|+++|++||.|..|.|+. .++.++|||||+|.+.++|++||+.||+..|+|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~--~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKM--ENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEE--SSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc--cCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999987 4789999999999999999999999999999999999999
Q ss_pred ccCCC
Q psy4080 256 SVTQR 260 (403)
Q Consensus 256 a~~~~ 260 (403)
+.+..
T Consensus 83 a~~~~ 87 (92)
T 2dgv_A 83 DRNAS 87 (92)
T ss_dssp CSCCS
T ss_pred cCCCC
Confidence 97654
No 85
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.3e-19 Score=142.69 Aligned_cols=83 Identities=31% Similarity=0.543 Sum_probs=79.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy4080 178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSV 257 (403)
Q Consensus 178 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~ 257 (403)
..++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.|||..|+|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCC
Q psy4080 258 TQR 260 (403)
Q Consensus 258 ~~~ 260 (403)
++.
T Consensus 87 ~~~ 89 (104)
T 1p1t_A 87 SEK 89 (104)
T ss_dssp CTT
T ss_pred Ccc
Confidence 654
No 86
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3.4e-18 Score=134.03 Aligned_cols=83 Identities=18% Similarity=0.313 Sum_probs=77.9
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
.....++|||+|||+++|+++|+++|+.| .|..|.|+.+ .+|.++|||||+|.+.++|.+||+ ||+..|+|+.|.|.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 44567899999999999999999999999 9999999999 889999999999999999999998 99999999999999
Q ss_pred eccCCC
Q psy4080 255 FSVTQR 260 (403)
Q Consensus 255 ~a~~~~ 260 (403)
++..+.
T Consensus 83 ~a~~~~ 88 (91)
T 2dgw_A 83 REKSGP 88 (91)
T ss_dssp EESSCC
T ss_pred ECCcCC
Confidence 997654
No 87
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.77 E-value=7.4e-19 Score=144.07 Aligned_cols=106 Identities=26% Similarity=0.404 Sum_probs=91.2
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
++.++++|||+|||+++|+++|+++|+.||.|..|.|+.+ +.++|||||+|.+.++|.+|++.|||..++|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 80 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVL 80 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3466799999999999999999999999999999999865 4558999999999999999999999999999999999
Q ss_pred eccCCCCCCCCCCcCCCCCCcccCCCceeeeCCCCCccccchHHHHHHhcCC
Q psy4080 255 FSVTQRAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGE 306 (403)
Q Consensus 255 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~ 306 (403)
++.+.... .++.....+.+++++|+.||-
T Consensus 81 ~a~~~~~~-----------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 81 YYNANRAF-----------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp ECCHHHHT-----------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred EecCChhh-----------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 98643321 345556677888888888874
No 88
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=7.1e-19 Score=141.57 Aligned_cols=80 Identities=18% Similarity=0.230 Sum_probs=75.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy4080 177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFS 256 (403)
Q Consensus 177 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a 256 (403)
...++|||+|||+++|+++|+++|++||+|.+|.|+.++. +.++|||||+|.+.++|.+||+ +++..|+|+.|.|.++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 4568999999999999999999999999999999999977 9999999999999999999997 8999999999999987
Q ss_pred cC
Q psy4080 257 VT 258 (403)
Q Consensus 257 ~~ 258 (403)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 54
No 89
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.77 E-value=3.1e-18 Score=142.39 Aligned_cols=87 Identities=28% Similarity=0.428 Sum_probs=81.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy4080 176 PQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDF 255 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~ 255 (403)
..+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|.+|++.|||..|+|+.|.|.+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999999999997 999999999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q psy4080 256 SVTQRAHT 263 (403)
Q Consensus 256 a~~~~~~~ 263 (403)
|.......
T Consensus 111 a~~~~~~~ 118 (124)
T 2kt5_A 111 VASQIDLE 118 (124)
T ss_dssp ECCTTCCC
T ss_pred eCCCCCCC
Confidence 97755433
No 90
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.77 E-value=6.1e-19 Score=139.37 Aligned_cols=81 Identities=21% Similarity=0.252 Sum_probs=76.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy4080 177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFS 256 (403)
Q Consensus 177 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a 256 (403)
.+.++|||+|||+++|+++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 44689999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred c
Q psy4080 257 V 257 (403)
Q Consensus 257 ~ 257 (403)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 4
No 91
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.9e-18 Score=136.33 Aligned_cols=86 Identities=34% Similarity=0.451 Sum_probs=79.3
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy4080 174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRV 253 (403)
Q Consensus 174 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V 253 (403)
....+.++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+ +++.|+|+.|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v 87 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEE
Confidence 344667899999999999999999999999999999999999999999999999999999999997 578999999999
Q ss_pred EeccCCCC
Q psy4080 254 DFSVTQRA 261 (403)
Q Consensus 254 ~~a~~~~~ 261 (403)
.++.++..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cqg_A 88 KLPNSKQS 95 (103)
T ss_dssp ECCCTTCC
T ss_pred EecCCCCc
Confidence 99977654
No 92
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.6e-19 Score=138.55 Aligned_cols=81 Identities=23% Similarity=0.345 Sum_probs=76.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy4080 176 PQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDF 255 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~ 255 (403)
+.+.++|||+|||+++|+++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|.+|++.|||..|+|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred c
Q psy4080 256 S 256 (403)
Q Consensus 256 a 256 (403)
+
T Consensus 82 ~ 82 (85)
T 1x4e_A 82 P 82 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 93
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5.3e-18 Score=137.60 Aligned_cols=85 Identities=26% Similarity=0.382 Sum_probs=77.0
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
...+.++|||+|||+++|+++|+++|++||.|..|.|+. ++.++|||||+|.+.++|++||+.||+..|+|+.|.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 345678999999999999999999999999999999954 45689999999999999999999999999999999999
Q ss_pred eccCCCCC
Q psy4080 255 FSVTQRAH 262 (403)
Q Consensus 255 ~a~~~~~~ 262 (403)
++......
T Consensus 95 ~a~~~~~~ 102 (109)
T 1x4a_A 95 FPRSGRGT 102 (109)
T ss_dssp CCCCCCCC
T ss_pred EcccCCCC
Confidence 99776543
No 94
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.5e-18 Score=139.43 Aligned_cols=86 Identities=27% Similarity=0.301 Sum_probs=79.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCC-eEEEEEE-eeCCCCCcceEEEEEecCHHHHHHHHHHhC--CceeCCeEE
Q psy4080 176 PQPSRCLGVFGLSIYTTEQQINHIFSKYGP-VERVEVV-IDAKTGRSRGFCFVYFESRDDAAAAKDACT--GMEIDGRQI 251 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~-i~~v~i~-~d~~tg~~rG~afV~f~~~~~a~~Al~~l~--g~~l~g~~i 251 (403)
..+.++|||+|||+++|+++|+++|.+||. |..|.|+ .++.++.++|||||+|.+.++|.+||+.|+ +..|+|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 356789999999999999999999999998 9999998 788899999999999999999999999996 589999999
Q ss_pred EEEeccCCCC
Q psy4080 252 RVDFSVTQRA 261 (403)
Q Consensus 252 ~V~~a~~~~~ 261 (403)
.|.++.++..
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999987654
No 95
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.76 E-value=3.5e-18 Score=149.35 Aligned_cols=87 Identities=30% Similarity=0.501 Sum_probs=80.9
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
...+.++|||+|||+++|+++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||+.|||..|.|+.|.|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCC
Q psy4080 255 FSVTQRA 261 (403)
Q Consensus 255 ~a~~~~~ 261 (403)
|+.++..
T Consensus 148 ~a~~~~~ 154 (165)
T 1rk8_A 148 WCFVKGP 154 (165)
T ss_dssp ESEECC-
T ss_pred EecCCCC
Confidence 9977654
No 96
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.7e-18 Score=139.97 Aligned_cols=85 Identities=19% Similarity=0.320 Sum_probs=78.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHH---HHhhcCCCeEEEEEEeeCCCC---CcceEEEEEecCHHHHHHHHHHhCCceeCCe
Q psy4080 176 PQPSRCLGVFGLSIYTTEQQIN---HIFSKYGPVERVEVVIDAKTG---RSRGFCFVYFESRDDAAAAKDACTGMEIDGR 249 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~~te~~L~---~~F~~~G~i~~v~i~~d~~tg---~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~ 249 (403)
..+.++|||+|||+++++++|. ++|++||+|..|.|+.++.++ .++|||||+|.+.++|++||+.||+..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3457899999999999999999 999999999999999987754 5669999999999999999999999999999
Q ss_pred EEEEEeccCCC
Q psy4080 250 QIRVDFSVTQR 260 (403)
Q Consensus 250 ~i~V~~a~~~~ 260 (403)
.|.|.+|.++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999997765
No 97
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.76 E-value=5.7e-19 Score=148.40 Aligned_cols=86 Identities=23% Similarity=0.372 Sum_probs=80.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEE--EEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCc----eeCCe
Q psy4080 176 PQPSRCLGVFGLSIYTTEQQINHIFSKYGPVER--VEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGM----EIDGR 249 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~--v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~----~l~g~ 249 (403)
....++|||+|||+++||++|+++|++||.|.. |.|+.|+.||.++|||||+|.+. +|.+||+.|||. .|+|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 456789999999999999999999999999977 99999999999999999999999 999999999999 99999
Q ss_pred EEEEEeccCCCCC
Q psy4080 250 QIRVDFSVTQRAH 262 (403)
Q Consensus 250 ~i~V~~a~~~~~~ 262 (403)
.|.|.++.+....
T Consensus 99 ~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 99 TINVEFAKGSKRD 111 (131)
T ss_dssp CCCCEECCCSCCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999876543
No 98
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.76 E-value=6.3e-19 Score=140.97 Aligned_cols=84 Identities=23% Similarity=0.299 Sum_probs=75.0
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeC-CCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q psy4080 174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDA-KTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIR 252 (403)
Q Consensus 174 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~-~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~ 252 (403)
......++|||+|||+++|+++|+++|+.|| |..|.|+.++ .+|.++|||||+|.+.++|.+|| .|+|..|+|+.|.
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 3456679999999999999999999999999 9999999998 68999999999999999999999 8999999999999
Q ss_pred EEeccCC
Q psy4080 253 VDFSVTQ 259 (403)
Q Consensus 253 V~~a~~~ 259 (403)
|.++.++
T Consensus 92 V~~a~~~ 98 (100)
T 2j76_E 92 VDVADQA 98 (100)
T ss_dssp CEECCCS
T ss_pred EEeccCC
Confidence 9998654
No 99
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.76 E-value=6.3e-19 Score=133.07 Aligned_cols=75 Identities=32% Similarity=0.475 Sum_probs=72.2
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy4080 181 CLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFS 256 (403)
Q Consensus 181 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a 256 (403)
+|||+|||+++|+++|+++|++||+|..|.++.++.++.++|||||+|.+.++|++|++ |++..|+|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999998899999999999999999999996 9999999999999875
No 100
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7.2e-18 Score=135.05 Aligned_cols=82 Identities=16% Similarity=0.238 Sum_probs=73.4
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHh--CCceeCCeEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC--TGMEIDGRQIR 252 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l--~g~~l~g~~i~ 252 (403)
...++++|||+|||+++|+++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|++.| ++..|.|++|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 4467899999999999999999999999999999988764 689999999999999999976 56789999999
Q ss_pred EEeccCCCCC
Q psy4080 253 VDFSVTQRAH 262 (403)
Q Consensus 253 V~~a~~~~~~ 262 (403)
|.++..+...
T Consensus 85 V~~a~~~~~~ 94 (101)
T 2cq1_A 85 IQYSNHKELK 94 (101)
T ss_dssp EEECSCSSCC
T ss_pred EEEcCcccCc
Confidence 9999876543
No 101
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.75 E-value=3.4e-18 Score=136.03 Aligned_cols=83 Identities=22% Similarity=0.298 Sum_probs=72.9
Q ss_pred CCCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCce--eCCe
Q psy4080 172 GRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGME--IDGR 249 (403)
Q Consensus 172 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~--l~g~ 249 (403)
......++++|||+|||+++|+++|+++|++||.|.+|.|++ .||||||+|.+.++|.+|++.|++.. |.|+
T Consensus 14 ~~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr 87 (100)
T 3r27_A 14 DPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGH 87 (100)
T ss_dssp ---CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTE
T ss_pred ccccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCc
Confidence 344567889999999999999999999999999999999975 36799999999999999999999875 7899
Q ss_pred EEEEEeccCCC
Q psy4080 250 QIRVDFSVTQR 260 (403)
Q Consensus 250 ~i~V~~a~~~~ 260 (403)
+|.|.+++.+.
T Consensus 88 ~i~V~~S~~k~ 98 (100)
T 3r27_A 88 PAFVNYSTSQK 98 (100)
T ss_dssp EEEEEECSCSC
T ss_pred EEEEEeccccc
Confidence 99999997654
No 102
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.75 E-value=5.3e-18 Score=140.82 Aligned_cols=82 Identities=26% Similarity=0.403 Sum_probs=77.7
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q psy4080 179 SRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVT 258 (403)
Q Consensus 179 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~~ 258 (403)
.++|||+|||.++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|| .|||..|+|+.|.|.++..
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 479999999999999999999999999999999999999999999999999999999999 8999999999999999875
Q ss_pred CCC
Q psy4080 259 QRA 261 (403)
Q Consensus 259 ~~~ 261 (403)
...
T Consensus 115 ~~~ 117 (124)
T 2jwn_A 115 NMP 117 (124)
T ss_dssp CCS
T ss_pred CCC
Confidence 443
No 103
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.7e-18 Score=140.12 Aligned_cols=82 Identities=34% Similarity=0.463 Sum_probs=78.2
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q psy4080 179 SRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVT 258 (403)
Q Consensus 179 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~~ 258 (403)
.++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+. ++..|+|+.|.|.++.+
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 48999999999999999999999999999999999999999999999999999999999977 99999999999999987
Q ss_pred CCC
Q psy4080 259 QRA 261 (403)
Q Consensus 259 ~~~ 261 (403)
+..
T Consensus 106 ~~~ 108 (116)
T 1x4b_A 106 REE 108 (116)
T ss_dssp CCC
T ss_pred Ccc
Confidence 654
No 104
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.75 E-value=9.1e-18 Score=145.31 Aligned_cols=116 Identities=22% Similarity=0.343 Sum_probs=99.8
Q ss_pred CCCCceeeeechhhHHHHHHHHHhHh----------hhhCCCCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEE
Q psy4080 142 YGGRGKIIIAVVTEVEEEAEATAMVE----------EFADGRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEV 211 (403)
Q Consensus 142 ~~g~g~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i 211 (403)
..|++++.|...+.+..+........ ..........+.++|||+|||.++|+++|+++|++||.|..+.+
T Consensus 40 ~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i 119 (166)
T 3md3_A 40 NVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHV 119 (166)
T ss_dssp CEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEE
T ss_pred CCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEE
Confidence 45789999999999988886543211 01112234556789999999999999999999999999999999
Q ss_pred EeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy4080 212 VIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSV 257 (403)
Q Consensus 212 ~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~ 257 (403)
+.++.++.++|||||+|.+.++|.+|++.|||..++|+.|.|.||.
T Consensus 120 ~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 120 MWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp EECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred EecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 9999999999999999999999999999999999999999999985
No 105
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=7.6e-18 Score=134.72 Aligned_cols=83 Identities=30% Similarity=0.513 Sum_probs=75.6
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
...+.++|||+|||+++|+++|+++|++||.| .++.+ .++.++|||||+|.+.++|++||+.||+..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 45678999999999999999999999999987 56666 789999999999999999999999999999999999999
Q ss_pred eccCCCC
Q psy4080 255 FSVTQRA 261 (403)
Q Consensus 255 ~a~~~~~ 261 (403)
++.++..
T Consensus 87 ~a~~~~~ 93 (101)
T 2fc9_A 87 LQGPRGS 93 (101)
T ss_dssp ECSSCCC
T ss_pred EcCCCCC
Confidence 9987654
No 106
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.8e-18 Score=140.40 Aligned_cols=81 Identities=25% Similarity=0.364 Sum_probs=77.4
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q psy4080 179 SRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVT 258 (403)
Q Consensus 179 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~~ 258 (403)
.++|||+|||.++|+++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|++|| .||+..|+|+.|.|.++.+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 489999999999999999999999999999999999999999999999999999999999 9999999999999999875
Q ss_pred CC
Q psy4080 259 QR 260 (403)
Q Consensus 259 ~~ 260 (403)
+.
T Consensus 104 ~~ 105 (114)
T 2cq4_A 104 EK 105 (114)
T ss_dssp HH
T ss_pred Cc
Confidence 43
No 107
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.75 E-value=1.4e-17 Score=147.28 Aligned_cols=84 Identities=29% Similarity=0.463 Sum_probs=79.1
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
...+.++|||+|||+++|+++|+++|++||+|+.|.|+.++ ++.++|||||+|.+.++|++||+.||+..|+|+.|.|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred eccCC
Q psy4080 255 FSVTQ 259 (403)
Q Consensus 255 ~a~~~ 259 (403)
+|...
T Consensus 163 ~a~~~ 167 (177)
T 2f3j_A 163 LVASQ 167 (177)
T ss_dssp EESSG
T ss_pred EecCC
Confidence 98653
No 108
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=9.1e-19 Score=132.74 Aligned_cols=76 Identities=29% Similarity=0.400 Sum_probs=73.4
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy4080 180 RCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFS 256 (403)
Q Consensus 180 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a 256 (403)
++|||+|||+++|+++|+++|++||+|..|.++.++.++.++|||||+|.+.++|++|++.++ ..++|+.|.|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999999999999999999999999999999998 9999999999987
No 109
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.4e-18 Score=137.84 Aligned_cols=82 Identities=24% Similarity=0.362 Sum_probs=76.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCcee--------C
Q psy4080 176 PQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEI--------D 247 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l--------~ 247 (403)
..+.++|||+|||+++|+++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||+.|||..| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 4567899999999999999999999999999999999997 999999999999999999999999999999 5
Q ss_pred CeEEEEEeccC
Q psy4080 248 GRQIRVDFSVT 258 (403)
Q Consensus 248 g~~i~V~~a~~ 258 (403)
+++|.|.|+.+
T Consensus 101 ~~~l~v~~a~p 111 (114)
T 1x5o_A 101 TEPLLCKFSGP 111 (114)
T ss_dssp SSCBEEEECCC
T ss_pred CCceeEEccCC
Confidence 78899999864
No 110
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.75 E-value=5.2e-18 Score=143.66 Aligned_cols=82 Identities=34% Similarity=0.539 Sum_probs=77.5
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
...+.++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ec
Q psy4080 255 FS 256 (403)
Q Consensus 255 ~a 256 (403)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 75
No 111
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.75 E-value=5.1e-18 Score=130.65 Aligned_cols=73 Identities=15% Similarity=0.225 Sum_probs=69.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy4080 178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFS 256 (403)
Q Consensus 178 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a 256 (403)
.+.-|||+||++.+||++|+++|.+||+|.++.++. ++|||||+|.+.++|.+|++.||+..|.|++|.|++|
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 467899999999999999999999999999999865 6899999999999999999999999999999999987
No 112
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=130.92 Aligned_cols=80 Identities=24% Similarity=0.331 Sum_probs=73.8
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
...+.++|||+|||.++|+++|+++|++||+|..|.|+ +|||||+|.+.++|++||+.||+..|+|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 34567999999999999999999999999999999997 5699999999999999999999999999999999
Q ss_pred eccCCCCC
Q psy4080 255 FSVTQRAH 262 (403)
Q Consensus 255 ~a~~~~~~ 262 (403)
++.++...
T Consensus 76 ~a~~~~~~ 83 (90)
T 2dnq_A 76 ASKNKSKA 83 (90)
T ss_dssp CSSCCCCC
T ss_pred ECCCCCCC
Confidence 99876553
No 113
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.5e-18 Score=138.24 Aligned_cols=86 Identities=27% Similarity=0.531 Sum_probs=78.5
Q ss_pred CCCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q psy4080 172 GRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQI 251 (403)
Q Consensus 172 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i 251 (403)
........++|||+|||.++|+++|+++|++||.|..|.|+.++ +.++|||||+|.+.++|++|++.|+|..|+|+.|
T Consensus 22 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 99 (109)
T 2err_A 22 NTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 99 (109)
T ss_dssp CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEEC
T ss_pred CccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34455678999999999999999999999999999999999884 3589999999999999999999999999999999
Q ss_pred EEEeccCC
Q psy4080 252 RVDFSVTQ 259 (403)
Q Consensus 252 ~V~~a~~~ 259 (403)
.|.++.++
T Consensus 100 ~V~~a~~~ 107 (109)
T 2err_A 100 EVNNATAR 107 (109)
T ss_dssp EEEECCCS
T ss_pred EEEECCCC
Confidence 99998654
No 114
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.74 E-value=4.6e-18 Score=137.19 Aligned_cols=82 Identities=21% Similarity=0.342 Sum_probs=75.7
Q ss_pred CCCCCEEEEcCCCCCC------cHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCe
Q psy4080 176 PQPSRCLGVFGLSIYT------TEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGR 249 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~~------te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~ 249 (403)
....++|||+|||+.+ |+++|+++|++||.|..|.|+ +.+|.++|||||+|.+.++|.+||+.|||..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3457899999999999 889999999999999999988 47899999999999999999999999999999998
Q ss_pred -EEEEEeccCC
Q psy4080 250 -QIRVDFSVTQ 259 (403)
Q Consensus 250 -~i~V~~a~~~ 259 (403)
.|.|.++...
T Consensus 90 ~~l~V~~a~~~ 100 (105)
T 2nlw_A 90 HTFRVNLFTDF 100 (105)
T ss_dssp CEEEEECSCCC
T ss_pred ceEEEEEcchH
Confidence 9999998643
No 115
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.9e-18 Score=136.34 Aligned_cols=83 Identities=25% Similarity=0.280 Sum_probs=76.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEE-EEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 176 PQPSRCLGVFGLSIYTTEQQINHIFSKYGPVER-VEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~-v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
....++|||+|||+++|+++|+++|++||.|.. |.|+.+ .+|+++|||||+|.+.++|++||+. ++..|+|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 456789999999999999999999999999998 888888 8999999999999999999999976 9999999999999
Q ss_pred eccCCC
Q psy4080 255 FSVTQR 260 (403)
Q Consensus 255 ~a~~~~ 260 (403)
++..+.
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 986544
No 116
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.74 E-value=5.1e-19 Score=138.44 Aligned_cols=81 Identities=27% Similarity=0.436 Sum_probs=74.3
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q psy4080 180 RCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVTQ 259 (403)
Q Consensus 180 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~~~ 259 (403)
++|||+|||.++++++|+++|++||+|..|.|+.++.++.++|||||+|.+.+ |.+|++.|||..++|+.|.|.+|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999999999999999999999 99999999999999999999999765
Q ss_pred CC
Q psy4080 260 RA 261 (403)
Q Consensus 260 ~~ 261 (403)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 117
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7.2e-18 Score=138.68 Aligned_cols=83 Identities=19% Similarity=0.291 Sum_probs=74.4
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCC--ceeCCeEE
Q psy4080 174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTG--MEIDGRQI 251 (403)
Q Consensus 174 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g--~~l~g~~i 251 (403)
....++++|||+|||+++||++|+++|++||.|++|.|+.+ +|||||+|.+.++|.+|++.|++ ..|.|++|
T Consensus 26 ~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l 99 (119)
T 2ad9_A 26 SAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 99 (119)
T ss_dssp SCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEE
Confidence 34567899999999999999999999999999999999875 68999999999999999998874 67999999
Q ss_pred EEEeccCCCCC
Q psy4080 252 RVDFSVTQRAH 262 (403)
Q Consensus 252 ~V~~a~~~~~~ 262 (403)
.|.++..+...
T Consensus 100 ~V~~a~~k~~~ 110 (119)
T 2ad9_A 100 YIQFSNHKELK 110 (119)
T ss_dssp EEEECSSSSCC
T ss_pred EEEEccCCCCC
Confidence 99999776543
No 118
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.74 E-value=1.5e-18 Score=146.63 Aligned_cols=87 Identities=36% Similarity=0.529 Sum_probs=81.4
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
...+.++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|.
T Consensus 43 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 122 (135)
T 2lea_A 43 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 122 (135)
T ss_dssp SGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34557899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eccCCCC
Q psy4080 255 FSVTQRA 261 (403)
Q Consensus 255 ~a~~~~~ 261 (403)
++.+...
T Consensus 123 ~a~~~~~ 129 (135)
T 2lea_A 123 MARYGRP 129 (135)
T ss_dssp ECCCCCC
T ss_pred ECCCCCC
Confidence 9976554
No 119
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.9e-18 Score=137.00 Aligned_cols=83 Identities=29% Similarity=0.427 Sum_probs=75.7
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
.+...++|||+|||+++|+++|+++|++||.| .|.|+.++ +++++|||||+|.+.++|++|| .+|+..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEE
Confidence 34567899999999999999999999999955 99999997 8999999999999999999999 579999999999999
Q ss_pred eccCCC
Q psy4080 255 FSVTQR 260 (403)
Q Consensus 255 ~a~~~~ 260 (403)
++....
T Consensus 88 ~~~~~~ 93 (102)
T 1wez_A 88 LNSTAG 93 (102)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 886544
No 120
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=9.1e-18 Score=135.24 Aligned_cols=82 Identities=22% Similarity=0.265 Sum_probs=72.9
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCc--eeCCeEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGM--EIDGRQIR 252 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~--~l~g~~i~ 252 (403)
...+.++|||+|||+++||++|+++|++||.|..|.|+.+ ||||||+|.+.++|.+|++.|++. .|.|++|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4467899999999999999999999999999999998753 689999999999999999988654 59999999
Q ss_pred EEeccCCCCC
Q psy4080 253 VDFSVTQRAH 262 (403)
Q Consensus 253 V~~a~~~~~~ 262 (403)
|.++..+...
T Consensus 85 V~~a~~~~~~ 94 (104)
T 1wex_A 85 FNYSTSKRIT 94 (104)
T ss_dssp EEECSSSSCC
T ss_pred EEEccCcccc
Confidence 9999876543
No 121
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=135.35 Aligned_cols=79 Identities=20% Similarity=0.190 Sum_probs=73.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC-----eE
Q psy4080 176 PQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDG-----RQ 250 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g-----~~ 250 (403)
....++|||+|||+++|+++|+++|++||+|+.|.|+.+ |||||+|.+.++|++||+.||+..|+| +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 456789999999999999999999999999999999876 799999999999999999999999999 99
Q ss_pred EEEEeccCCCC
Q psy4080 251 IRVDFSVTQRA 261 (403)
Q Consensus 251 i~V~~a~~~~~ 261 (403)
|.|.++.++..
T Consensus 85 i~V~~a~~~~~ 95 (108)
T 1x4c_A 85 IRVKVDGPRSP 95 (108)
T ss_dssp EEEEESSCCSC
T ss_pred EEEEeCCCCCC
Confidence 99999987553
No 122
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.5e-17 Score=133.24 Aligned_cols=84 Identities=42% Similarity=0.584 Sum_probs=77.0
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
...+.++|||+|||+++|+++|+++|+.|+ .|.++.++.++.++|||||+|.+.++|++||+.||+..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 456789999999999999999999999773 67888888899999999999999999999999999999999999999
Q ss_pred eccCCCC
Q psy4080 255 FSVTQRA 261 (403)
Q Consensus 255 ~a~~~~~ 261 (403)
++.++..
T Consensus 88 ~a~~~~~ 94 (102)
T 2fc8_A 88 WAKPKGE 94 (102)
T ss_dssp ECCCCCS
T ss_pred EecCCCC
Confidence 9977654
No 123
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.9e-18 Score=139.72 Aligned_cols=83 Identities=18% Similarity=0.307 Sum_probs=77.2
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCe-EEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPV-ERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRV 253 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i-~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V 253 (403)
.+.+.++|||+|||+++|+++|+++|+.||.| ..|.|+.++ ++.++|||||+|.+.++|++||+. |+..|+|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 34567899999999999999999999999999 899999997 999999999999999999999966 999999999999
Q ss_pred EeccCC
Q psy4080 254 DFSVTQ 259 (403)
Q Consensus 254 ~~a~~~ 259 (403)
.++..+
T Consensus 89 ~~a~~~ 94 (114)
T 2cpy_A 89 HVVTLE 94 (114)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998654
No 124
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.9e-18 Score=141.53 Aligned_cols=89 Identities=21% Similarity=0.394 Sum_probs=76.9
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
...+.++|||+|||+++|+++|+++|++||.|..|.+..+..++.++|||||+|.+.++|++||+.||+..|+|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567999999999999999999999999999544333333488999999999999999999999999999999999999
Q ss_pred eccCCCCCC
Q psy4080 255 FSVTQRAHT 263 (403)
Q Consensus 255 ~a~~~~~~~ 263 (403)
++.++....
T Consensus 101 ~a~~~~~~~ 109 (115)
T 2cpx_A 101 FGKNKKQRS 109 (115)
T ss_dssp ECCCCSCCC
T ss_pred EccCCCCCC
Confidence 998766543
No 125
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=9.1e-18 Score=140.14 Aligned_cols=84 Identities=18% Similarity=0.339 Sum_probs=75.3
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHH----HHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCe
Q psy4080 174 ENPQPSRCLGVFGLSIYTTEQQIN----HIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGR 249 (403)
Q Consensus 174 ~~~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~ 249 (403)
....+.++|||+|||+.+++++|+ ++|++||.|.+|.+. .++.++|||||+|.+.++|.+||+.|||..|.|+
T Consensus 24 ~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr 100 (127)
T 2a3j_A 24 PHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD---LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGN 100 (127)
T ss_dssp CCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC---CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec---cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCC
Confidence 345568999999999999999876 699999999998874 4688999999999999999999999999999999
Q ss_pred EEEEEeccCCC
Q psy4080 250 QIRVDFSVTQR 260 (403)
Q Consensus 250 ~i~V~~a~~~~ 260 (403)
+|.|.||..+.
T Consensus 101 ~l~V~~a~~~~ 111 (127)
T 2a3j_A 101 PLVITFSETPQ 111 (127)
T ss_dssp CCEEEECCCCC
T ss_pred EEEEEEccCcc
Confidence 99999997654
No 126
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.73 E-value=1.1e-17 Score=145.99 Aligned_cols=113 Identities=19% Similarity=0.298 Sum_probs=96.7
Q ss_pred CCCceeeeechhhHHHHHHHHHhHh--------hhhCCCCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEee
Q psy4080 143 GGRGKIIIAVVTEVEEEAEATAMVE--------EFADGRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVID 214 (403)
Q Consensus 143 ~g~g~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d 214 (403)
.|++|+.|...+++..+. ...... ............++|||+|||.++|+++|+++|++||.|..|.++.+
T Consensus 51 ~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~ 129 (172)
T 2g4b_A 51 KNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKD 129 (172)
T ss_dssp TTEEEEEESSHHHHHHHG-GGTTCEETTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEEC
T ss_pred CCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEec
Confidence 689999999999988887 321100 11112233445789999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy4080 215 AKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFS 256 (403)
Q Consensus 215 ~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a 256 (403)
+.+|.++|||||+|.+.++|.+|++.|||..|+|+.|.|.+|
T Consensus 130 ~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 130 SATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 889999999999999999999999999999999999999987
No 127
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.73 E-value=1.3e-17 Score=150.97 Aligned_cols=123 Identities=17% Similarity=0.240 Sum_probs=101.9
Q ss_pred CCCCceeeeechhhHHHHHHHHHhHhhhh------CC-------------CCCCCCCCEEEEcCCCCCCcHHHHHHHhhc
Q psy4080 142 YGGRGKIIIAVVTEVEEEAEATAMVEEFA------DG-------------RENPQPSRCLGVFGLSIYTTEQQINHIFSK 202 (403)
Q Consensus 142 ~~g~g~~~~~~~~~~~~~~~~~~~~~~~~------~~-------------~~~~~~~~~l~V~nLp~~~te~~L~~~F~~ 202 (403)
..|++|+.|...+.+..+.+......-.. .. .......++|||+|||.++|+++|+++|++
T Consensus 69 ~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~ 148 (216)
T 2qfj_A 69 HKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEA 148 (216)
T ss_dssp CCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTT
T ss_pred cCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhc
Confidence 56899999999999988887542110000 00 001234589999999999999999999999
Q ss_pred CCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccCCCCCCC
Q psy4080 203 YGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVTQRAHTP 264 (403)
Q Consensus 203 ~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~~~~~~~~ 264 (403)
||.|..|.|+.++.++.++|||||+|.+.++|.+|++.|||..|+|+.|.|.++.++.....
T Consensus 149 ~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~~~~ 210 (216)
T 2qfj_A 149 FGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLL 210 (216)
T ss_dssp SSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSSTTS
T ss_pred cCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999987654433
No 128
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.73 E-value=7e-18 Score=139.14 Aligned_cols=82 Identities=23% Similarity=0.231 Sum_probs=76.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCC---eEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q psy4080 176 PQPSRCLGVFGLSIYTTEQQINHIFSKYGP---VERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIR 252 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~---i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~ 252 (403)
....++|||+|||+++|+++|+++|+.||. |..|.|+.++. |+++|||||+|.+.++|++||+ ||+..|+|+.|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 456789999999999999999999999999 89999999976 9999999999999999999997 999999999999
Q ss_pred EEeccCC
Q psy4080 253 VDFSVTQ 259 (403)
Q Consensus 253 V~~a~~~ 259 (403)
|.++..+
T Consensus 92 V~~a~~~ 98 (118)
T 2db1_A 92 VFKSHRT 98 (118)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9998543
No 129
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=9.3e-18 Score=134.47 Aligned_cols=80 Identities=18% Similarity=0.267 Sum_probs=72.0
Q ss_pred CCCCCCEEEEcCCCC-CCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCC--ceeCCeEE
Q psy4080 175 NPQPSRCLGVFGLSI-YTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTG--MEIDGRQI 251 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g--~~l~g~~i 251 (403)
...++++|||+|||+ ++||++|+++|++||.|.+|.|+.+ +|||||+|.+.++|.+||+.|++ ..|.|++|
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 345789999999999 9999999999999999999999865 46999999999999999999886 45999999
Q ss_pred EEEeccCCC
Q psy4080 252 RVDFSVTQR 260 (403)
Q Consensus 252 ~V~~a~~~~ 260 (403)
.|.+|....
T Consensus 85 ~V~~a~~~~ 93 (102)
T 1x4d_A 85 RVHLSQKYK 93 (102)
T ss_dssp EEEEECCCT
T ss_pred EEEECCCCC
Confidence 999997544
No 130
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.73 E-value=3.4e-18 Score=131.19 Aligned_cols=73 Identities=23% Similarity=0.409 Sum_probs=68.5
Q ss_pred CCEEEEcCCCCCC------cHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCe-EE
Q psy4080 179 SRCLGVFGLSIYT------TEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGR-QI 251 (403)
Q Consensus 179 ~~~l~V~nLp~~~------te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~-~i 251 (403)
+++|||+|||..+ |+++|+++|++||+|..|.|+ +.+|.++|||||+|.+.++|.+||+.|||..|+|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 889999999999999999987 47899999999999999999999999999999999 88
Q ss_pred EE
Q psy4080 252 RV 253 (403)
Q Consensus 252 ~V 253 (403)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 131
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.7e-18 Score=142.82 Aligned_cols=81 Identities=22% Similarity=0.256 Sum_probs=75.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy4080 177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFS 256 (403)
Q Consensus 177 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a 256 (403)
...++|||+|||+++|+++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|++||+ ||+..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 456899999999999999999999999999987777777899999999999999999999998 9999999999999998
Q ss_pred cC
Q psy4080 257 VT 258 (403)
Q Consensus 257 ~~ 258 (403)
..
T Consensus 102 ~~ 103 (124)
T 1wel_A 102 TK 103 (124)
T ss_dssp CH
T ss_pred CH
Confidence 54
No 132
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.6e-17 Score=131.87 Aligned_cols=80 Identities=28% Similarity=0.475 Sum_probs=73.3
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC--CeEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEID--GRQIR 252 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~--g~~i~ 252 (403)
...+.++|||+|||+++|+++|+++|++||.|..|.++.+ +|||||+|.+.++|++|++.||+..|. |+.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 3456789999999999999999999999999999998753 679999999999999999999999999 99999
Q ss_pred EEeccCCC
Q psy4080 253 VDFSVTQR 260 (403)
Q Consensus 253 V~~a~~~~ 260 (403)
|.++.++.
T Consensus 87 V~~a~~~~ 94 (97)
T 1why_A 87 VDFAKSGP 94 (97)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99997654
No 133
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.73 E-value=7.6e-18 Score=142.25 Aligned_cols=82 Identities=21% Similarity=0.203 Sum_probs=76.3
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCC---eEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGP---VERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQI 251 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~---i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i 251 (403)
.....++|||+|||+++|+++|+++|++||. |..|.|+.++. |+++|||||+|.+.++|++||+ ||+..|+|+.|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 3456789999999999999999999999999 89999999976 9999999999999999999998 99999999999
Q ss_pred EEEeccC
Q psy4080 252 RVDFSVT 258 (403)
Q Consensus 252 ~V~~a~~ 258 (403)
.|.++..
T Consensus 118 ~V~~a~~ 124 (136)
T 2hgl_A 118 EVFKSHR 124 (136)
T ss_dssp EEEECCH
T ss_pred EEEECCh
Confidence 9998743
No 134
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.1e-17 Score=134.16 Aligned_cols=81 Identities=21% Similarity=0.380 Sum_probs=74.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy4080 176 PQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDF 255 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~ 255 (403)
....++|||+|||.++|+++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+||+.|+|..|+|+.|.|.+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 355789999999999999999999999999999999875 67999999999999999999999999999999999
Q ss_pred ccCCCCC
Q psy4080 256 SVTQRAH 262 (403)
Q Consensus 256 a~~~~~~ 262 (403)
+.++...
T Consensus 96 a~~~~~~ 102 (109)
T 1x4g_A 96 GKESPDM 102 (109)
T ss_dssp CCCCCSS
T ss_pred cCCCCCC
Confidence 9876543
No 135
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.72 E-value=8e-18 Score=154.89 Aligned_cols=81 Identities=19% Similarity=0.256 Sum_probs=76.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCC--CeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy4080 178 PSRCLGVFGLSIYTTEQQINHIFSKYG--PVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDF 255 (403)
Q Consensus 178 ~~~~l~V~nLp~~~te~~L~~~F~~~G--~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~ 255 (403)
..++|||+|||+++|+++|+++|++|| .|+.|.|+.|+.|++++|||||+|.+.++|++||+.||+..|+|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q psy4080 256 SVT 258 (403)
Q Consensus 256 a~~ 258 (403)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 854
No 136
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4.2e-17 Score=128.10 Aligned_cols=81 Identities=28% Similarity=0.444 Sum_probs=73.9
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy4080 174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRV 253 (403)
Q Consensus 174 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V 253 (403)
....+.++|||+|||+++|+++|+++|++||.|..|.|+++ ||||+|.+.++|.+|++.||+..|.|+.|.|
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 76 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 76 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 34567899999999999999999999999999999999743 9999999999999999999999999999999
Q ss_pred EeccCCCCC
Q psy4080 254 DFSVTQRAH 262 (403)
Q Consensus 254 ~~a~~~~~~ 262 (403)
.++.++...
T Consensus 77 ~~a~~~~~~ 85 (92)
T 2dgt_A 77 QLSTSRLRT 85 (92)
T ss_dssp EESSCCCSC
T ss_pred EEccCCCCC
Confidence 999776543
No 137
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.72 E-value=8.3e-18 Score=136.99 Aligned_cols=80 Identities=15% Similarity=0.091 Sum_probs=72.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCC-CeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 176 PQPSRCLGVFGLSIYTTEQQINHIFSKYG-PVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
+...++|||+|||+++|+++|+++|++|| +|..|.|+. +.++|||||+|.+.++|++||+.|||..|+|+.|.|.
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 45678999999999999999999999999 899998853 3478999999999999999999999999999999999
Q ss_pred eccCC
Q psy4080 255 FSVTQ 259 (403)
Q Consensus 255 ~a~~~ 259 (403)
++...
T Consensus 101 ~a~~~ 105 (111)
T 2jvr_A 101 RDDNP 105 (111)
T ss_dssp ESCC-
T ss_pred ECCCC
Confidence 98654
No 138
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.72 E-value=8.1e-18 Score=133.38 Aligned_cols=82 Identities=21% Similarity=0.421 Sum_probs=75.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHH----HHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q psy4080 176 PQPSRCLGVFGLSIYTTEQQIN----HIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQI 251 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i 251 (403)
..+.++|||+|||.++|+++|+ ++|++||.|..|.++ .++.++|||||+|.+.++|.+|++.|||..++|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~---~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVS---RSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECC---HHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEE---cCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4578999999999999999999 999999999999886 367889999999999999999999999999999999
Q ss_pred EEEeccCCC
Q psy4080 252 RVDFSVTQR 260 (403)
Q Consensus 252 ~V~~a~~~~ 260 (403)
.|.++.++.
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999997654
No 139
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.8e-17 Score=126.98 Aligned_cols=78 Identities=23% Similarity=0.408 Sum_probs=71.7
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHh-CCceeCCeEEE
Q psy4080 174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC-TGMEIDGRQIR 252 (403)
Q Consensus 174 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l-~g~~l~g~~i~ 252 (403)
....+.++|||+|||.++|+++|+++|++||.|..|.++.+ +|||||+|.+.++|.+|++.| ++..++|+.|.
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~ 80 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLN 80 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECC
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEE
Confidence 34466789999999999999999999999999999999863 689999999999999999989 99999999999
Q ss_pred EEecc
Q psy4080 253 VDFSV 257 (403)
Q Consensus 253 V~~a~ 257 (403)
|.||+
T Consensus 81 v~~ak 85 (85)
T 2ytc_A 81 VKWGR 85 (85)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99973
No 140
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.72 E-value=3.7e-17 Score=164.13 Aligned_cols=88 Identities=28% Similarity=0.529 Sum_probs=82.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy4080 176 PQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDF 255 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~ 255 (403)
..+.++|||+|||++||+++|.++|++||.|+.|.|+.++.|+.++|||||+|.+.++|.+||+.|||..|+|+.|.|.+
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q psy4080 256 SVTQRAHT 263 (403)
Q Consensus 256 a~~~~~~~ 263 (403)
+.+.....
T Consensus 179 a~~~~~~~ 186 (437)
T 3pgw_S 179 ERGRTVKG 186 (437)
T ss_pred eCCCCCCC
Confidence 98765433
No 141
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2e-17 Score=131.40 Aligned_cols=81 Identities=16% Similarity=0.224 Sum_probs=72.9
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
.....++|||+|||+++|+++|+++|++||.|. +.++.+ .++|||||+|.+.++|++||+.|||..|+|+.|.|.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 345678999999999999999999999999997 666654 578899999999999999999999999999999999
Q ss_pred eccCCC
Q psy4080 255 FSVTQR 260 (403)
Q Consensus 255 ~a~~~~ 260 (403)
++.++.
T Consensus 90 ~a~~~~ 95 (97)
T 2e5j_A 90 LARQQR 95 (97)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 997654
No 142
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.3e-17 Score=131.42 Aligned_cols=81 Identities=31% Similarity=0.427 Sum_probs=74.2
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
...+.++|||+|||+++|+++|+++|++||+|..|.|+.+ +|||||+|.+.++|.+|++.|++..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 4466789999999999999999999999999999999754 6799999999999999999999999999999999
Q ss_pred eccCCCC
Q psy4080 255 FSVTQRA 261 (403)
Q Consensus 255 ~a~~~~~ 261 (403)
++.++..
T Consensus 85 ~a~~~~~ 91 (99)
T 2cpj_A 85 FACHSAS 91 (99)
T ss_dssp ESSCCSC
T ss_pred EcCCCCC
Confidence 9976543
No 143
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.72 E-value=4.1e-17 Score=129.70 Aligned_cols=79 Identities=16% Similarity=0.303 Sum_probs=71.2
Q ss_pred CCCCCCCCEEEEcCCCC-CCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q psy4080 173 RENPQPSRCLGVFGLSI-YTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQI 251 (403)
Q Consensus 173 ~~~~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i 251 (403)
.....+.++|||+|||+ ++++++|+++|++||.|..|.|. +|||||+|.+.++|.+|++.|||..++|+.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKL 87 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEEC
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34556789999999998 99999999999999999999983 6799999999999999999999999999999
Q ss_pred EEEeccCC
Q psy4080 252 RVDFSVTQ 259 (403)
Q Consensus 252 ~V~~a~~~ 259 (403)
.|.++..+
T Consensus 88 ~V~~a~~~ 95 (97)
T 2xnq_A 88 ILEVSSSN 95 (97)
T ss_dssp EEEECCCC
T ss_pred EEEecCCC
Confidence 99998654
No 144
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.72 E-value=4.5e-17 Score=141.44 Aligned_cols=115 Identities=23% Similarity=0.346 Sum_probs=98.3
Q ss_pred CCCCceeeeechhhHHHHHHHHHhHh--------hhhCCCCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEe
Q psy4080 142 YGGRGKIIIAVVTEVEEEAEATAMVE--------EFADGRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVI 213 (403)
Q Consensus 142 ~~g~g~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~ 213 (403)
..|++|+.|...+++..+........ ..........+.++|||+|||..+|+++|+++|++||.|..+.++.
T Consensus 44 ~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~ 123 (168)
T 1b7f_A 44 SYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILR 123 (168)
T ss_dssp ECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEE
T ss_pred cceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEE
Confidence 45799999999999888887543211 1112233445678999999999999999999999999999999999
Q ss_pred eCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC--eEEEEEec
Q psy4080 214 DAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDG--RQIRVDFS 256 (403)
Q Consensus 214 d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g--~~i~V~~a 256 (403)
++.++.++|||||+|.+.++|.+|++.|||..+.| ++|.|.+|
T Consensus 124 ~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 124 DKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred cCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 98899999999999999999999999999999988 99999986
No 145
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.72 E-value=1.2e-18 Score=139.31 Aligned_cols=84 Identities=23% Similarity=0.306 Sum_probs=76.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy4080 176 PQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDF 255 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~ 255 (403)
..+.++|||+|||+++|+++|+++|++||.|.. .++.++.++.++|||||+|.+.++|++||+ ||+..|.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 446789999999999999999999999999888 677777889999999999999999999998 999999999999999
Q ss_pred ccCCCC
Q psy4080 256 SVTQRA 261 (403)
Q Consensus 256 a~~~~~ 261 (403)
+.++..
T Consensus 92 a~~~~~ 97 (101)
T 1fj7_A 92 PKGRDG 97 (101)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 976543
No 146
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.71 E-value=3e-17 Score=133.16 Aligned_cols=80 Identities=28% Similarity=0.472 Sum_probs=72.5
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy4080 174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRV 253 (403)
Q Consensus 174 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V 253 (403)
......++|||+|||+++|+++|+++|++||.|..|.|+ +|||||+|.+.++|++|++.|||..|+|+.|.|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 345678999999999999999999999999999999997 679999999999999999999999999999999
Q ss_pred EeccCCCC
Q psy4080 254 DFSVTQRA 261 (403)
Q Consensus 254 ~~a~~~~~ 261 (403)
.++.++..
T Consensus 98 ~~a~~~~~ 105 (108)
T 2jvo_A 98 VYSKLPAK 105 (108)
T ss_dssp ESCSCCC-
T ss_pred EEecCCCC
Confidence 99976543
No 147
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.4e-17 Score=135.17 Aligned_cols=78 Identities=23% Similarity=0.301 Sum_probs=72.6
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy4080 178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSV 257 (403)
Q Consensus 178 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~ 257 (403)
...+|||+|||+++|+++|+++|+.| .|..|.|+.++. |+++|||||+|.+.++|++|| .||+..|+|+.|.|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 34799999999999999999999999 899999999965 999999999999999999999 789999999999998874
Q ss_pred C
Q psy4080 258 T 258 (403)
Q Consensus 258 ~ 258 (403)
.
T Consensus 92 ~ 92 (109)
T 2dnn_A 92 E 92 (109)
T ss_dssp H
T ss_pred c
Confidence 3
No 148
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=2e-17 Score=132.22 Aligned_cols=77 Identities=18% Similarity=0.413 Sum_probs=71.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy4080 176 PQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDF 255 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~ 255 (403)
+...++|||+|||.++|+++|+++|++||.|.+|.++ .++|||||+|.+.++|.+|++.|||..|+|+.|.|.|
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 3456899999999999999999999999999999987 3578999999999999999999999999999999999
Q ss_pred ccC
Q psy4080 256 SVT 258 (403)
Q Consensus 256 a~~ 258 (403)
+.+
T Consensus 98 a~~ 100 (101)
T 2la4_A 98 GKE 100 (101)
T ss_dssp CCC
T ss_pred ccC
Confidence 865
No 149
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.71 E-value=3.3e-18 Score=128.99 Aligned_cols=75 Identities=28% Similarity=0.472 Sum_probs=71.6
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy4080 181 CLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFS 256 (403)
Q Consensus 181 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a 256 (403)
+|||+|||+++|+++|+++|++||+|..|.++.++.++.++|||||+|.+.++|.+||+ +++..++|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999999999999999999999999999999996 5899999999999875
No 150
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.71 E-value=3.3e-17 Score=146.08 Aligned_cols=119 Identities=24% Similarity=0.363 Sum_probs=93.9
Q ss_pred CCCCceeeeechhhHHHHHHHHHhH-------------hhhhCCCCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEE
Q psy4080 142 YGGRGKIIIAVVTEVEEEAEATAMV-------------EEFADGRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVER 208 (403)
Q Consensus 142 ~~g~g~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~ 208 (403)
..|++|+.|...+++..+....... .............++|||+|||+++|+++|+++|+.||.|..
T Consensus 54 ~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~ 133 (196)
T 1l3k_A 54 SRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133 (196)
T ss_dssp EEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEE
T ss_pred ccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEE
Confidence 3579999999999888887652100 000011122335689999999999999999999999999999
Q ss_pred EEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccCCCC
Q psy4080 209 VEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVTQRA 261 (403)
Q Consensus 209 v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~~~~~ 261 (403)
|.|+.++.++.++|||||+|.+.++|.+||+. ++..|+|+.|.|.++.++..
T Consensus 134 v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~ 185 (196)
T 1l3k_A 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQE 185 (196)
T ss_dssp EEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC----
T ss_pred EEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhH
Confidence 99999988999999999999999999999976 89999999999999977654
No 151
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=5e-17 Score=127.12 Aligned_cols=79 Identities=29% Similarity=0.415 Sum_probs=72.7
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
...+.++|||+|||+++|+++|+++|++||.|..|.|+++ ||||+|.+.++|++||+.||+..|+|+.|.|.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4566789999999999999999999999999999999743 99999999999999999999999999999999
Q ss_pred eccCCCC
Q psy4080 255 FSVTQRA 261 (403)
Q Consensus 255 ~a~~~~~ 261 (403)
++.+...
T Consensus 77 ~a~~~~~ 83 (90)
T 2dnp_A 77 LSTKGQK 83 (90)
T ss_dssp ESCCCCC
T ss_pred ECCCCCC
Confidence 9977643
No 152
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.71 E-value=1.7e-17 Score=142.58 Aligned_cols=112 Identities=24% Similarity=0.269 Sum_probs=89.9
Q ss_pred CCCceeeeechhhHHHHHHHHH-hH-----------hh------------hhCCCCCCCCCCEEEEcCCCCCCcHHHHHH
Q psy4080 143 GGRGKIIIAVVTEVEEEAEATA-MV-----------EE------------FADGRENPQPSRCLGVFGLSIYTTEQQINH 198 (403)
Q Consensus 143 ~g~g~~~~~~~~~~~~~~~~~~-~~-----------~~------------~~~~~~~~~~~~~l~V~nLp~~~te~~L~~ 198 (403)
.|++.+.+...++++++.+... .. .. .........+.++|||+|||+++|+++|++
T Consensus 13 ~G~~~ve~~~~~~A~~a~~~~~ng~~~~G~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~ 92 (150)
T 2i2y_A 13 KGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTELER 92 (150)
T ss_dssp CEEEEEECSSHHHHTTTHHHHHHHHTCCCEEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHHHHH
T ss_pred cccceeeecCHHHHHHHHHHHhcCCCCCCceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 3445555788887777765541 10 00 001233445679999999999999999999
Q ss_pred HhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q psy4080 199 IFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVTQ 259 (403)
Q Consensus 199 ~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~~~ 259 (403)
+|++||.|..|.|+.+ ++|||||+|.+.++|.+||+.|||..|.|++|.|.++.++
T Consensus 93 ~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 93 AFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 9999999999999876 5789999999999999999999999999999999998764
No 153
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.2e-16 Score=127.23 Aligned_cols=79 Identities=33% Similarity=0.488 Sum_probs=72.1
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcC--CCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKY--GPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIR 252 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~--G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~ 252 (403)
...+.++|||+|||+++|+++|+++|++| |.|..|.++ +|||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 44567999999999999999999999999 999998874 46999999999999999999999999999999
Q ss_pred EEeccCCCC
Q psy4080 253 VDFSVTQRA 261 (403)
Q Consensus 253 V~~a~~~~~ 261 (403)
|.++.++..
T Consensus 83 v~~a~~~~~ 91 (99)
T 2cpd_A 83 VTLAKPVDK 91 (99)
T ss_dssp EECCCCCCC
T ss_pred EEECCCCCC
Confidence 999977654
No 154
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.70 E-value=1.5e-17 Score=144.57 Aligned_cols=117 Identities=21% Similarity=0.343 Sum_probs=96.4
Q ss_pred CCCCceeeeechhhHHHHHHHHHhHhhh------hCCCCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeC
Q psy4080 142 YGGRGKIIIAVVTEVEEEAEATAMVEEF------ADGRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDA 215 (403)
Q Consensus 142 ~~g~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~ 215 (403)
..|++|+.|...+.+..+.......... ........+.++|||+|||.++|+++|+++|++||.|..|.|+.++
T Consensus 44 ~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~ 123 (167)
T 2cjk_A 44 SRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDK 123 (167)
T ss_dssp CCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCCHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSS
T ss_pred ccceEEEEEccHHHHHHHHhcccccCCeEcccccccchhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcC
Confidence 4689999999999988887631100000 0000112246799999999999999999999999999999999998
Q ss_pred CCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q psy4080 216 KTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVTQ 259 (403)
Q Consensus 216 ~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~~~ 259 (403)
.+|.++|||||+|.+.++|.+|++ |++..++|+.|.|.+|.++
T Consensus 124 ~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 124 DTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp SSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred CCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 899999999999999999999996 8999999999999999764
No 155
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=3.1e-17 Score=133.48 Aligned_cols=80 Identities=21% Similarity=0.386 Sum_probs=71.6
Q ss_pred CCCCCEEEEcCCCCC-CcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhC--CceeCCeEEE
Q psy4080 176 PQPSRCLGVFGLSIY-TTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACT--GMEIDGRQIR 252 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~--g~~l~g~~i~ 252 (403)
..++++|||+|||++ +|+++|+++|++||.|.+|.|++ ++|||||+|.+.++|.+|++.|+ +..|.|++|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 456899999999998 99999999999999999999974 36899999999999999999886 4569999999
Q ss_pred EEeccCCCC
Q psy4080 253 VDFSVTQRA 261 (403)
Q Consensus 253 V~~a~~~~~ 261 (403)
|.++..+..
T Consensus 96 V~~a~~~~~ 104 (112)
T 1x4f_A 96 VDLSEKYKK 104 (112)
T ss_dssp EEEECSCSS
T ss_pred EEECccccc
Confidence 999976554
No 156
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=9.5e-17 Score=126.64 Aligned_cols=80 Identities=23% Similarity=0.314 Sum_probs=71.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy4080 176 PQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDF 255 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~ 255 (403)
....++|||+|||+++|+++|+++|++||.|..| +.++.++. ||||+|.+.++|++||+ |++..|+|+.|.|.+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 3456899999999999999999999999999987 66666766 99999999999999998 999999999999998
Q ss_pred ccCCCC
Q psy4080 256 SVTQRA 261 (403)
Q Consensus 256 a~~~~~ 261 (403)
+..+..
T Consensus 79 a~~~~~ 84 (94)
T 2e5g_A 79 REQKEF 84 (94)
T ss_dssp SCCSCC
T ss_pred CCcCCC
Confidence 865543
No 157
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.70 E-value=2.1e-17 Score=130.77 Aligned_cols=81 Identities=26% Similarity=0.452 Sum_probs=73.3
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
...+.++|||+|||+++|+++|+++|++||.|..+ ..++.++|||||+|.+.++|.+||+.|+|..|+|+.|.|.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999988665 3678999999999999999999999999999999999999
Q ss_pred eccCCC
Q psy4080 255 FSVTQR 260 (403)
Q Consensus 255 ~a~~~~ 260 (403)
++.++.
T Consensus 87 ~a~~~~ 92 (96)
T 1fjc_A 87 YTGEKG 92 (96)
T ss_dssp ECSSSC
T ss_pred EcCCCC
Confidence 997654
No 158
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.6e-17 Score=128.70 Aligned_cols=80 Identities=21% Similarity=0.364 Sum_probs=70.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCC-eEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCC-ceeCCeEEEE
Q psy4080 176 PQPSRCLGVFGLSIYTTEQQINHIFSKYGP-VERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTG-MEIDGRQIRV 253 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~-i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g-~~l~g~~i~V 253 (403)
..+.++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|++||+.||+ ..|+|+.|.|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 456789999999999999999999999999 6555552 468999999999999999999999 9999999999
Q ss_pred EeccCCCCC
Q psy4080 254 DFSVTQRAH 262 (403)
Q Consensus 254 ~~a~~~~~~ 262 (403)
.++.++...
T Consensus 78 ~~a~~~~~~ 86 (93)
T 2cqh_A 78 DYSVSKKLR 86 (93)
T ss_dssp EECCCCCCC
T ss_pred EEccCcccc
Confidence 999876543
No 159
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.70 E-value=8.2e-17 Score=143.76 Aligned_cols=117 Identities=19% Similarity=0.300 Sum_probs=98.6
Q ss_pred CCCceeeeechhhHHHHHHHHHhHh--------hhh--------------------CCCCCCCCCCEEEEcCCCCCCcHH
Q psy4080 143 GGRGKIIIAVVTEVEEEAEATAMVE--------EFA--------------------DGRENPQPSRCLGVFGLSIYTTEQ 194 (403)
Q Consensus 143 ~g~g~~~~~~~~~~~~~~~~~~~~~--------~~~--------------------~~~~~~~~~~~l~V~nLp~~~te~ 194 (403)
.|++|+.|...+++..+. ...... ... .........++|||+|||.++|++
T Consensus 51 ~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~ 129 (198)
T 2yh0_A 51 KNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDD 129 (198)
T ss_dssp TTEEEEEESCSHHHHHHG-GGTTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHH
T ss_pred CCEEEEEeCCHHHHHHHH-HhcCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHH
Confidence 589999999999999888 322100 000 001112567999999999999999
Q ss_pred HHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccCCC
Q psy4080 195 QINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVTQR 260 (403)
Q Consensus 195 ~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~~~~ 260 (403)
+|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|++.|||..|+|+.|.|.++.++.
T Consensus 130 ~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 130 QVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp HHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred HHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 999999999999999999998899999999999999999999999999999999999999997654
No 160
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=9.7e-19 Score=143.68 Aligned_cols=86 Identities=26% Similarity=0.389 Sum_probs=80.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEE--------EEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC
Q psy4080 177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVER--------VEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDG 248 (403)
Q Consensus 177 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~--------v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g 248 (403)
.+.++|||+|||.++|+++|+++|++||.|.. |.|+.++.++.++|||||+|.+.++|.+||+.||+..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45789999999999999999999999999999 9999998999999999999999999999999999999999
Q ss_pred eEEEEEeccCCCCC
Q psy4080 249 RQIRVDFSVTQRAH 262 (403)
Q Consensus 249 ~~i~V~~a~~~~~~ 262 (403)
+.|.|.++.++...
T Consensus 85 ~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 85 NPIKVSFATRRADF 98 (116)
Confidence 99999999876543
No 161
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.70 E-value=6.6e-17 Score=131.38 Aligned_cols=78 Identities=22% Similarity=0.373 Sum_probs=71.7
Q ss_pred CCCCCEEEEcCCCCC-CcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 176 PQPSRCLGVFGLSIY-TTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
....++|||+|||++ +|+++|+++|++||.|..|.| ++|||||+|.+.++|++||+.|++..|+|+.|.|.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDIN 95 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 345689999999999 999999999999999999998 46899999999999999999999999999999999
Q ss_pred eccCCCC
Q psy4080 255 FSVTQRA 261 (403)
Q Consensus 255 ~a~~~~~ 261 (403)
++.....
T Consensus 96 ~a~~~~~ 102 (110)
T 1wf1_A 96 MAGEPKP 102 (110)
T ss_dssp ESCCCCS
T ss_pred ECCCCCC
Confidence 9975443
No 162
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.70 E-value=1.3e-16 Score=128.07 Aligned_cols=80 Identities=26% Similarity=0.490 Sum_probs=73.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy4080 176 PQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDF 255 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~ 255 (403)
..+.++|||+|||+++|+++|+++|++||.|..|.|+ +|||||+|.+.++|++||+.||+..|+|+.|.|.+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 4567899999999999999999999999999999986 34999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q psy4080 256 SVTQRAHT 263 (403)
Q Consensus 256 a~~~~~~~ 263 (403)
+.++....
T Consensus 80 a~~~~~~~ 87 (103)
T 2dgu_A 80 AKPPDQKR 87 (103)
T ss_dssp CCCCCCCC
T ss_pred cCCCcccc
Confidence 98765543
No 163
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.4e-16 Score=125.07 Aligned_cols=82 Identities=22% Similarity=0.362 Sum_probs=73.2
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy4080 174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRV 253 (403)
Q Consensus 174 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V 253 (403)
....+.++|||+|| ++|+++|+++|++||+|..|.|. .++|||||+|.+.++|.+||+.||+..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 81 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 81 (97)
T ss_dssp CCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34457799999996 89999999999999999999984 46789999999999999999999999999999999
Q ss_pred EeccCCCCCC
Q psy4080 254 DFSVTQRAHT 263 (403)
Q Consensus 254 ~~a~~~~~~~ 263 (403)
.++.++....
T Consensus 82 ~~a~~~~~~~ 91 (97)
T 1x5p_A 82 NIARKQPMLD 91 (97)
T ss_dssp ECCSSCCCCC
T ss_pred EECCCCCCCC
Confidence 9997765533
No 164
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.70 E-value=9.3e-18 Score=135.88 Aligned_cols=82 Identities=18% Similarity=0.215 Sum_probs=76.2
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCC---eEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGP---VERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQI 251 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~---i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i 251 (403)
.....++|||+|||+++|+++|+++|+.||. |..|.|+.++. |.++|||||+|.+.++|++||+ |++..|+|+.|
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 4456789999999999999999999999988 89999999977 9999999999999999999997 99999999999
Q ss_pred EEEeccC
Q psy4080 252 RVDFSVT 258 (403)
Q Consensus 252 ~V~~a~~ 258 (403)
.|.++..
T Consensus 85 ~V~~a~~ 91 (107)
T 2lmi_A 85 EVYEINN 91 (107)
T ss_dssp CCEECCH
T ss_pred EEEECCH
Confidence 9998854
No 165
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.70 E-value=2.4e-17 Score=149.93 Aligned_cols=116 Identities=18% Similarity=0.225 Sum_probs=95.1
Q ss_pred CCCCceeeeechhhHHHHHHHHHhHhhhhC----------CCCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEE
Q psy4080 142 YGGRGKIIIAVVTEVEEEAEATAMVEEFAD----------GRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEV 211 (403)
Q Consensus 142 ~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i 211 (403)
..|++|+.|...+.++.+........-... .........+|||+|||+++|+++|+++|++||.|+.|.|
T Consensus 56 ~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i 135 (213)
T 4f02_A 56 SLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 135 (213)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred ccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEe
Confidence 457999999999999888776432110000 0001123578999999999999999999999999999999
Q ss_pred EeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q psy4080 212 VIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVTQ 259 (403)
Q Consensus 212 ~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~~~ 259 (403)
+.+. +.++|||||+|.+.++|.+||+.|||..|+|++|.|.+|.++
T Consensus 136 ~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 136 VCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp EEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred eccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 9984 458999999999999999999999999999999999998754
No 166
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.70 E-value=1.6e-17 Score=132.97 Aligned_cols=81 Identities=23% Similarity=0.494 Sum_probs=76.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy4080 177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFS 256 (403)
Q Consensus 177 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a 256 (403)
...++|||+|||+++|+++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||+ ++..|+|+.|.|.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 456899999999999999999999999999999999997 99999999999999999999996 999999999999998
Q ss_pred cCCC
Q psy4080 257 VTQR 260 (403)
Q Consensus 257 ~~~~ 260 (403)
..+.
T Consensus 84 ~~~~ 87 (102)
T 2xs2_A 84 IRKQ 87 (102)
T ss_dssp EECC
T ss_pred CcCc
Confidence 7654
No 167
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=4e-17 Score=129.37 Aligned_cols=78 Identities=18% Similarity=0.331 Sum_probs=71.2
Q ss_pred CCCCCEEEEcCCCC-CCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 176 PQPSRCLGVFGLSI-YTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 176 ~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
..+.++|||+|||+ ++|+++|+++|++||.|..|.|. +|||||+|.+.++|++||+.||+..+.|+.|.|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45689999999998 99999999999999999999984 6799999999999999999999999999999999
Q ss_pred eccCCCC
Q psy4080 255 FSVTQRA 261 (403)
Q Consensus 255 ~a~~~~~ 261 (403)
++.+...
T Consensus 79 ~a~~~~~ 85 (96)
T 2kvi_A 79 VSSSNAR 85 (96)
T ss_dssp EEECCCC
T ss_pred EcCcCCC
Confidence 9976554
No 168
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.69 E-value=8e-17 Score=139.48 Aligned_cols=115 Identities=25% Similarity=0.375 Sum_probs=96.4
Q ss_pred CCCCceeeeechhhHHHHHHHHHhHh--------hhhCCCCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEe
Q psy4080 142 YGGRGKIIIAVVTEVEEEAEATAMVE--------EFADGRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVI 213 (403)
Q Consensus 142 ~~g~g~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~ 213 (403)
..|++|+.|...+.+..+........ ............++|||+|||..+|+++|+++|++||.|..+.++.
T Consensus 43 ~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~ 122 (167)
T 1fxl_A 43 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILV 122 (167)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred ceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEe
Confidence 34789999999999888887543211 1111223344678999999999999999999999999999999999
Q ss_pred eCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeE--EEEEec
Q psy4080 214 DAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQ--IRVDFS 256 (403)
Q Consensus 214 d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~--i~V~~a 256 (403)
+..+|.++|||||+|.+.++|.+|++.|||..+.|+. |.|.||
T Consensus 123 ~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 123 DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred cCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 9889999999999999999999999999999999964 888875
No 169
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.69 E-value=5.5e-17 Score=133.17 Aligned_cols=77 Identities=21% Similarity=0.287 Sum_probs=70.9
Q ss_pred CEEEEcCC----CCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecC----HHH----HHHHHH--HhCCce
Q psy4080 180 RCLGVFGL----SIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFES----RDD----AAAAKD--ACTGME 245 (403)
Q Consensus 180 ~~l~V~nL----p~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~----~~~----a~~Al~--~l~g~~ 245 (403)
.+|||+|| |+.++|++|+++|+.||+|.+|.++.|+.||.++|||||+|.+ +++ |.+|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 433 788988 789999
Q ss_pred eCCeEEEEEec
Q psy4080 246 IDGRQIRVDFS 256 (403)
Q Consensus 246 l~g~~i~V~~a 256 (403)
|+|+.|+|.+-
T Consensus 83 I~Gr~irV~ln 93 (136)
T 2j8a_A 83 IMGFKFEVILN 93 (136)
T ss_dssp ETTEEEEEEEC
T ss_pred ecCcEEEEEEC
Confidence 99999999975
No 170
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.69 E-value=9.6e-17 Score=140.19 Aligned_cols=114 Identities=24% Similarity=0.272 Sum_probs=94.8
Q ss_pred CCCCceeeeechhhHHHHHHHHHhHhhh------------hCCCCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEE
Q psy4080 142 YGGRGKIIIAVVTEVEEEAEATAMVEEF------------ADGRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERV 209 (403)
Q Consensus 142 ~~g~g~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v 209 (403)
..|++|+.|...+.+..+........-. ..........++|||+|||+++|+++|+++|++||.|..|
T Consensus 46 ~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v 125 (175)
T 3nmr_A 46 SKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEEC 125 (175)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEE
T ss_pred cceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEE
Confidence 4578999999999998888755321100 0112233467899999999999999999999999999999
Q ss_pred EEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC---CeEEEEEec
Q psy4080 210 EVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEID---GRQIRVDFS 256 (403)
Q Consensus 210 ~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~---g~~i~V~~a 256 (403)
.++.++ +|.++|||||+|.+.++|.+|++.|||..+. +++|.|.||
T Consensus 126 ~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 126 RILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp EEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred EEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 999984 6999999999999999999999999998875 499999997
No 171
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=8.9e-17 Score=130.89 Aligned_cols=83 Identities=16% Similarity=0.232 Sum_probs=72.8
Q ss_pred CCCCCCCEEEE--cCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCcee-----
Q psy4080 174 ENPQPSRCLGV--FGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEI----- 246 (403)
Q Consensus 174 ~~~~~~~~l~V--~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l----- 246 (403)
....++++||| |||++++|+++|+++|++||.|..|.|+. .+|||||+|.+.++|++|++.|||..|
T Consensus 20 ~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg 93 (114)
T 2cq2_A 20 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 93 (114)
T ss_dssp CCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred CCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccC
Confidence 34456889999 77999999999999999999999998753 268999999999999999999999998
Q ss_pred CCeEEEEEeccCCCCC
Q psy4080 247 DGRQIRVDFSVTQRAH 262 (403)
Q Consensus 247 ~g~~i~V~~a~~~~~~ 262 (403)
.|++|.|.++...+..
T Consensus 94 ~g~~l~v~~a~~~p~~ 109 (114)
T 2cq2_A 94 QKITLYLNFVEKVQWS 109 (114)
T ss_dssp CEEECEEEEESCCCCS
T ss_pred CCcEEEEEecccCccc
Confidence 6899999998755443
No 172
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.68 E-value=4e-17 Score=139.03 Aligned_cols=88 Identities=24% Similarity=0.350 Sum_probs=75.9
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEE--E---EeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC
Q psy4080 173 RENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVE--V---VIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEID 247 (403)
Q Consensus 173 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~--i---~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~ 247 (403)
.....+.++|||+|||+++|+++|+++|++||.|..|. + +....++.++|||||+|.+.++|.+||+.|||..|.
T Consensus 39 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 39 YEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp CCCCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 34456789999999999999999999999999987741 1 111357899999999999999999999999999999
Q ss_pred CeEEEEEeccCCC
Q psy4080 248 GRQIRVDFSVTQR 260 (403)
Q Consensus 248 g~~i~V~~a~~~~ 260 (403)
|+.|.|.+|....
T Consensus 119 g~~l~V~~a~~~~ 131 (143)
T 3egn_A 119 GKPMVVQFARSAR 131 (143)
T ss_dssp TEECEEEECCCSC
T ss_pred CcEEEEEECCCCC
Confidence 9999999997654
No 173
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=9.9e-17 Score=130.74 Aligned_cols=77 Identities=16% Similarity=0.107 Sum_probs=70.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy4080 178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSV 257 (403)
Q Consensus 178 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~ 257 (403)
..++|||+|||+++|+++|+++|++||.|..|.|+. ++|||||+|.+.++|++||+.|||..|+|+.|.|.|+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 457999999999999999999999999999998864 56799999999999999999999999999999999996
Q ss_pred CCC
Q psy4080 258 TQR 260 (403)
Q Consensus 258 ~~~ 260 (403)
...
T Consensus 83 ~~~ 85 (111)
T 1whx_A 83 IGV 85 (111)
T ss_dssp TTT
T ss_pred CCc
Confidence 543
No 174
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=4.9e-17 Score=134.89 Aligned_cols=80 Identities=23% Similarity=0.272 Sum_probs=73.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCe----EEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q psy4080 177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPV----ERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIR 252 (403)
Q Consensus 177 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i----~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~ 252 (403)
....+|||+|||+++|+++|+++|++||.| ..|.|+.+ .+|+++|||||+|.+.++|++||+. |+..|+|+.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 446899999999999999999999999986 68999998 5899999999999999999999975 99999999999
Q ss_pred EEeccC
Q psy4080 253 VDFSVT 258 (403)
Q Consensus 253 V~~a~~ 258 (403)
|..+..
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 988743
No 175
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.67 E-value=1.4e-17 Score=141.14 Aligned_cols=82 Identities=27% Similarity=0.369 Sum_probs=74.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy4080 176 PQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDF 255 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~ 255 (403)
....++|||+|||+++||++|+++|++|| |+.|.|+.++. ++++|||||+|.+.++|++|| .||+..|+|+.|.|.+
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 34568999999999999999999999999 67999999965 999999999999999999999 8899999999999998
Q ss_pred ccCCC
Q psy4080 256 SVTQR 260 (403)
Q Consensus 256 a~~~~ 260 (403)
+....
T Consensus 120 a~~~~ 124 (139)
T 2hgn_A 120 NSTTG 124 (139)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 86544
No 176
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.67 E-value=6.8e-17 Score=134.44 Aligned_cols=81 Identities=25% Similarity=0.291 Sum_probs=73.3
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeE--EEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVE--RVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIR 252 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~--~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~ 252 (403)
.+...++|||+|||+++||++|+++|+.| .|+ .|.|+.|+. |+++|||||+|.+.++|++||+ +++..|+|+.|.
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~ 114 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIE 114 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEE
Confidence 34567899999999999999999999999 677 999999976 9999999999999999999996 478999999999
Q ss_pred EEeccC
Q psy4080 253 VDFSVT 258 (403)
Q Consensus 253 V~~a~~ 258 (403)
|.++..
T Consensus 115 V~~a~~ 120 (126)
T 2hgm_A 115 VFKSSQ 120 (126)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 988743
No 177
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.67 E-value=2.4e-16 Score=122.80 Aligned_cols=76 Identities=18% Similarity=0.235 Sum_probs=70.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy4080 177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFS 256 (403)
Q Consensus 177 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a 256 (403)
...++|||+|||+++|+++|+++|++| .|..|.|. .++|||||+|.+.++|++|++.|||..++|+.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 356899999999999999999999999 99999884 57899999999999999999999999999999999998
Q ss_pred cCC
Q psy4080 257 VTQ 259 (403)
Q Consensus 257 ~~~ 259 (403)
...
T Consensus 76 ~~~ 78 (88)
T 1wg1_A 76 PTD 78 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 178
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.67 E-value=2.1e-16 Score=138.52 Aligned_cols=112 Identities=21% Similarity=0.346 Sum_probs=92.3
Q ss_pred CCCCceeeeechhhHHHHHHHHHhHh----------hhhCCCCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEE
Q psy4080 142 YGGRGKIIIAVVTEVEEEAEATAMVE----------EFADGRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEV 211 (403)
Q Consensus 142 ~~g~g~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i 211 (403)
..|++|+.|...+.+..+.+ ..... ............++|||+|||.++|+++|+++|++||.|..+
T Consensus 53 ~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-- 129 (175)
T 1fje_B 53 NRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-- 129 (175)
T ss_dssp TTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE--
T ss_pred cccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe--
Confidence 46799999999999988884 22100 000112233457899999999999999999999999988765
Q ss_pred EeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q psy4080 212 VIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVTQ 259 (403)
Q Consensus 212 ~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~~~ 259 (403)
..++.++|||||+|.+.++|.+|++.|||..|+|+.|.|.||.++
T Consensus 130 ---~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 130 ---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp ---CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred ---cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 578999999999999999999999999999999999999999764
No 179
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.4e-16 Score=125.95 Aligned_cols=80 Identities=23% Similarity=0.347 Sum_probs=72.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEE-EEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 176 PQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERV-EVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v-~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
....++|||+|||+++|+++|+++|++||.|..| .|+.++.++ .|||+|.+.++|.+||+.|||..|+|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3457899999999999999999999999999999 588776654 49999999999999999999999999999999
Q ss_pred eccCC
Q psy4080 255 FSVTQ 259 (403)
Q Consensus 255 ~a~~~ 259 (403)
++.++
T Consensus 88 ~a~~~ 92 (96)
T 2e44_A 88 YIPDE 92 (96)
T ss_dssp ECCCC
T ss_pred EcCcc
Confidence 99765
No 180
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3.7e-16 Score=121.41 Aligned_cols=75 Identities=21% Similarity=0.326 Sum_probs=66.9
Q ss_pred CCCCE-EEEcCCCCCCcHHH----HHHHhhcC-CCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeE
Q psy4080 177 QPSRC-LGVFGLSIYTTEQQ----INHIFSKY-GPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQ 250 (403)
Q Consensus 177 ~~~~~-l~V~nLp~~~te~~----L~~~F~~~-G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~ 250 (403)
++..| |||+|||+.+++++ |+++|++| |+|.+| |+ |||||+|.+.++|++|++.|+|..|.|++
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 45666 99999999999988 55899999 599998 33 89999999999999999999999999999
Q ss_pred EEEEeccCCCC
Q psy4080 251 IRVDFSVTQRA 261 (403)
Q Consensus 251 i~V~~a~~~~~ 261 (403)
|+|.+|+....
T Consensus 76 i~v~~A~~~sd 86 (96)
T 2diu_A 76 IIVSFTPKNRE 86 (96)
T ss_dssp CEEESSCCSCC
T ss_pred EEEEecCCCcc
Confidence 99999977654
No 181
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.65 E-value=1.2e-16 Score=131.01 Aligned_cols=76 Identities=21% Similarity=0.221 Sum_probs=66.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeE-----E
Q psy4080 177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQ-----I 251 (403)
Q Consensus 177 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~-----i 251 (403)
...++|||+|||+++|+++|+++|++||+|..|.|+.+ |||||+|.+.++|++||+.||+..|+|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 34689999999999999999999999999999999765 79999999999999999999999999988 7
Q ss_pred EEEeccCC
Q psy4080 252 RVDFSVTQ 259 (403)
Q Consensus 252 ~V~~a~~~ 259 (403)
+|..+.+.
T Consensus 87 ~v~~~~~~ 94 (115)
T 3beg_B 87 RVKVDGPR 94 (115)
T ss_dssp EEEECC--
T ss_pred EeccCCCC
Confidence 77776553
No 182
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.65 E-value=4.2e-16 Score=121.81 Aligned_cols=77 Identities=21% Similarity=0.282 Sum_probs=63.0
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCce--eCCeEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGME--IDGRQIR 252 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~--l~g~~i~ 252 (403)
...+..+|||+|||+++||++|+++|++||.|.+|.|+.+ ++|||||+|.+.++|++ |++.. +.|+.|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 4466799999999999999999999999999999999864 78999999999999984 35554 5699999
Q ss_pred EEeccCCC
Q psy4080 253 VDFSVTQR 260 (403)
Q Consensus 253 V~~a~~~~ 260 (403)
|.+|.++.
T Consensus 78 v~~a~~k~ 85 (89)
T 3d2w_A 78 ISNAEPKH 85 (89)
T ss_dssp EEECC---
T ss_pred EEEcCCCC
Confidence 99987654
No 183
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=4.9e-16 Score=127.15 Aligned_cols=78 Identities=29% Similarity=0.413 Sum_probs=68.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCC---CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q psy4080 176 PQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKT---GRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIR 252 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~t---g~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~ 252 (403)
....++|||+|||+++|+++|+++|++||+|. +.++.++.+ |.++|||||+|.+.++|++||+.|+ .++|+.|.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 34578999999999999999999999999999 888888777 7999999999999999999999883 47777777
Q ss_pred EEec
Q psy4080 253 VDFS 256 (403)
Q Consensus 253 V~~a 256 (403)
+..+
T Consensus 82 ~~~~ 85 (114)
T 2dnl_A 82 CVSS 85 (114)
T ss_dssp EECC
T ss_pred eccC
Confidence 7644
No 184
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.64 E-value=7.7e-16 Score=133.01 Aligned_cols=82 Identities=23% Similarity=0.255 Sum_probs=72.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC--eEEEE
Q psy4080 176 PQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDG--RQIRV 253 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g--~~i~V 253 (403)
+....+|||+||++.+|+++|+++|++||+|++|.|..+ .++|||||+|.+.++|++|++.|||..|.| +.|+|
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V 118 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 118 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEE
Confidence 444567999999999999999999999999999998653 257899999999999999999999999965 99999
Q ss_pred EeccCCCC
Q psy4080 254 DFSVTQRA 261 (403)
Q Consensus 254 ~~a~~~~~ 261 (403)
.|++++..
T Consensus 119 ~~Ak~~~l 126 (164)
T 1sjr_A 119 DFSKLTSL 126 (164)
T ss_dssp EECSSSSC
T ss_pred EEecCCcc
Confidence 99987643
No 185
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.64 E-value=1.5e-15 Score=126.49 Aligned_cols=80 Identities=25% Similarity=0.313 Sum_probs=71.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceE-EEEEecCHHHHHHHHHHhCCceeCC--eEEEE
Q psy4080 177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGF-CFVYFESRDDAAAAKDACTGMEIDG--RQIRV 253 (403)
Q Consensus 177 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~-afV~f~~~~~a~~Al~~l~g~~l~g--~~i~V 253 (403)
...-.|||+||++.+|+++|+++|++||+|.+|.|+.+ .+|| |||+|.+.++|++|++.|||..|.| +.|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 34467889999999999999999999999999988764 2578 9999999999999999999999988 99999
Q ss_pred EeccCCCC
Q psy4080 254 DFSVTQRA 261 (403)
Q Consensus 254 ~~a~~~~~ 261 (403)
+|++....
T Consensus 101 ~~ak~~~l 108 (130)
T 3zzy_A 101 DFSKLTSL 108 (130)
T ss_dssp EECSCSSC
T ss_pred EecCCCce
Confidence 99976643
No 186
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.63 E-value=8.3e-16 Score=127.22 Aligned_cols=79 Identities=23% Similarity=0.382 Sum_probs=71.7
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
.+.+.++|||+|| ++|+++|+++|++||.|..|.|. .++|||||+|.+.++|++||+.|||..|+|+.|.|.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456899999996 69999999999999999999985 467899999999999999999999999999999999
Q ss_pred eccCCCC
Q psy4080 255 FSVTQRA 261 (403)
Q Consensus 255 ~a~~~~~ 261 (403)
++.++..
T Consensus 107 ~a~~~~~ 113 (121)
T 2bz2_A 107 IARKQPM 113 (121)
T ss_dssp ECCSSCC
T ss_pred EeCCCCC
Confidence 9977654
No 187
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=2.6e-15 Score=124.35 Aligned_cols=76 Identities=22% Similarity=0.277 Sum_probs=67.9
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceE-EEEEecCHHHHHHHHHHhCCceeCC--eEEEEEec
Q psy4080 180 RCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGF-CFVYFESRDDAAAAKDACTGMEIDG--RQIRVDFS 256 (403)
Q Consensus 180 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~-afV~f~~~~~a~~Al~~l~g~~l~g--~~i~V~~a 256 (403)
..|||+||++.+|+++|+++|++||.|.+|.|+. + .|| |||+|.+.++|.+|+++|||..|.| +.|+|.+|
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 3468999999999999999999999999999865 2 276 9999999999999999999999987 69999999
Q ss_pred cCCCC
Q psy4080 257 VTQRA 261 (403)
Q Consensus 257 ~~~~~ 261 (403)
+++..
T Consensus 100 k~~~l 104 (124)
T 2e5i_A 100 RPTRL 104 (124)
T ss_dssp SCSCC
T ss_pred cCCcc
Confidence 76653
No 188
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.62 E-value=7.3e-16 Score=119.40 Aligned_cols=72 Identities=28% Similarity=0.447 Sum_probs=66.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcC----C-------CeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCce
Q psy4080 177 QPSRCLGVFGLSIYTTEQQINHIFSKY----G-------PVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGME 245 (403)
Q Consensus 177 ~~~~~l~V~nLp~~~te~~L~~~F~~~----G-------~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~ 245 (403)
.+.++|||+|||+++|+++|+++|++| | .|.++.+..+ +|||||+|.+.++|++|+ .||+..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 456899999999999999999999999 8 9999998754 689999999999999999 999999
Q ss_pred eCCeEEEEEe
Q psy4080 246 IDGRQIRVDF 255 (403)
Q Consensus 246 l~g~~i~V~~ 255 (403)
|+|+.|.|..
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999974
No 189
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4.6e-16 Score=121.05 Aligned_cols=78 Identities=23% Similarity=0.248 Sum_probs=66.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy4080 177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFS 256 (403)
Q Consensus 177 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a 256 (403)
.+.++|||+|||+++|+++|+++|++||+|..|.|+.+ ++|||||+|.+.++|++|+. ....+.|+.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEec
Confidence 45789999999999999999999999999999999764 68999999999999986542 234569999999998
Q ss_pred cCCCC
Q psy4080 257 VTQRA 261 (403)
Q Consensus 257 ~~~~~ 261 (403)
.++..
T Consensus 76 ~~~~~ 80 (88)
T 1wf0_A 76 EPKHN 80 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 77654
No 190
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.62 E-value=3e-15 Score=120.59 Aligned_cols=83 Identities=18% Similarity=0.167 Sum_probs=73.8
Q ss_pred CCCCCEEEEcCCCC-----CCcHHHHHHHhhcCCCeEEEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCe
Q psy4080 176 PQPSRCLGVFGLSI-----YTTEQQINHIFSKYGPVERVEVVIDAKT-GRSRGFCFVYFESRDDAAAAKDACTGMEIDGR 249 (403)
Q Consensus 176 ~~~~~~l~V~nLp~-----~~te~~L~~~F~~~G~i~~v~i~~d~~t-g~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~ 249 (403)
+.++++|+|.||.. +-++++|+++|++||.|.+|.|+.++.+ +.++|||||+|.+.++|.+|++.|||..++|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 35688999999963 2378999999999999999999998754 68999999999999999999999999999999
Q ss_pred EEEEEeccC
Q psy4080 250 QIRVDFSVT 258 (403)
Q Consensus 250 ~i~V~~a~~ 258 (403)
.|.|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999843
No 191
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.58 E-value=8e-15 Score=131.26 Aligned_cols=78 Identities=18% Similarity=0.232 Sum_probs=71.9
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q psy4080 179 SRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVT 258 (403)
Q Consensus 179 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~~ 258 (403)
.++|||+|||+++|+++|+++|++||+|..|.|+.+. ++.++|||||+|.+.++|.+||+.+ +..++|++|.|.++..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 4799999999999999999999999999999999985 5999999999999999999999664 5699999999998754
No 192
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.57 E-value=7.9e-15 Score=137.39 Aligned_cols=117 Identities=26% Similarity=0.269 Sum_probs=94.9
Q ss_pred CCCceeeeechhhHHHHHHHHHhHhh--hhCCCCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCc
Q psy4080 143 GGRGKIIIAVVTEVEEEAEATAMVEE--FADGRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRS 220 (403)
Q Consensus 143 ~g~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~ 220 (403)
.|++|+.|.....+..+........- .........+..+|||+|||+.+|+++|+++|+.||.|..|.|+.+ .+|.+
T Consensus 58 kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~ 136 (261)
T 3sde_A 58 RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRA 136 (261)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCE
T ss_pred CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCc
Confidence 58999999999988888764432110 0011112345789999999999999999999999999999999999 68999
Q ss_pred ceEEEEEecCHHHHHHHHHHhC-CceeC---CeEEEEEeccCCC
Q psy4080 221 RGFCFVYFESRDDAAAAKDACT-GMEID---GRQIRVDFSVTQR 260 (403)
Q Consensus 221 rG~afV~f~~~~~a~~Al~~l~-g~~l~---g~~i~V~~a~~~~ 260 (403)
+|||||+|.+.++|.+||+.|+ +..+. +++|.|.++....
T Consensus 137 ~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 137 TGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred CcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 9999999999999999999994 55555 9999999987543
No 193
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.56 E-value=1e-14 Score=131.88 Aligned_cols=112 Identities=14% Similarity=0.141 Sum_probs=89.8
Q ss_pred CCCceeeeechhhHHHHHHHHHhHh--------hhh------C-------------------------------CCCCCC
Q psy4080 143 GGRGKIIIAVVTEVEEEAEATAMVE--------EFA------D-------------------------------GRENPQ 177 (403)
Q Consensus 143 ~g~g~~~~~~~~~~~~~~~~~~~~~--------~~~------~-------------------------------~~~~~~ 177 (403)
.|++||.|...++++.+.+...-.. ... . ......
T Consensus 42 ~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 121 (205)
T 3tyt_A 42 PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQH 121 (205)
T ss_dssp TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCC
Confidence 5899999999999999988653100 000 0 000123
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCe--EEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCe----EE
Q psy4080 178 PSRCLGVFGLSIYTTEQQINHIFSKYGPV--ERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGR----QI 251 (403)
Q Consensus 178 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i--~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~----~i 251 (403)
++++|||+|||+++|+++|+++|++||.| ..|.++.+. +.++|||||+|.+.++|.+||..|||..|.|. ++
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 56789999999999999999999999999 899988764 55679999999999999999999999999886 67
Q ss_pred EEEec
Q psy4080 252 RVDFS 256 (403)
Q Consensus 252 ~V~~a 256 (403)
.|++|
T Consensus 200 ~vk~~ 204 (205)
T 3tyt_A 200 TLKLC 204 (205)
T ss_dssp ECEEE
T ss_pred EEEec
Confidence 77765
No 194
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.55 E-value=7.4e-15 Score=135.01 Aligned_cols=79 Identities=25% Similarity=0.404 Sum_probs=71.1
Q ss_pred CCCCCEEEEcCCCCCC---------cHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCcee
Q psy4080 176 PQPSRCLGVFGLSIYT---------TEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEI 246 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~~---------te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l 246 (403)
....++|||+||+..+ +|++|+++|++||+|++|.|+. ++|||||+|.+.++|+.|+++|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4567999999999998 8999999999999999999985 478999999999999999999999999
Q ss_pred ------------CCeEEEEEeccCCC
Q psy4080 247 ------------DGRQIRVDFSVTQR 260 (403)
Q Consensus 247 ------------~g~~i~V~~a~~~~ 260 (403)
.|+.|.|.||...+
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eccccccccccCCCCEEEEEEccCCC
Confidence 89999999997654
No 195
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=5.8e-14 Score=114.34 Aligned_cols=83 Identities=17% Similarity=0.211 Sum_probs=71.3
Q ss_pred CCCCCCEEEEcCCCCCCc-----------HHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCC
Q psy4080 175 NPQPSRCLGVFGLSIYTT-----------EQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTG 243 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~t-----------e~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g 243 (403)
.+.++++|+|.||....+ +++|+++|++||+|..|.| .++ .++|||||+|.+.++|.+|++.|||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 456789999999944432 6899999999999999965 543 3799999999999999999999999
Q ss_pred ceeCCeEEEEEeccCCCC
Q psy4080 244 MEIDGRQIRVDFSVTQRA 261 (403)
Q Consensus 244 ~~l~g~~i~V~~a~~~~~ 261 (403)
..|+|++|.|.++.+...
T Consensus 87 ~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp CEETTEECEEEECCSCCC
T ss_pred CEECCcEEEEEEeCCCCC
Confidence 999999999999976543
No 196
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.53 E-value=1.8e-14 Score=128.85 Aligned_cols=77 Identities=21% Similarity=0.338 Sum_probs=71.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCC-CeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC-CeEEEEE
Q psy4080 177 QPSRCLGVFGLSIYTTEQQINHIFSKYG-PVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEID-GRQIRVD 254 (403)
Q Consensus 177 ~~~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~-g~~i~V~ 254 (403)
.+.++|||+|||..+|+++|+++|++|| .|..|.|+.+ .+|||||+|.+.++|.+|++.|||..++ |+.|.|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 3478999999999999999999999999 9999998754 2689999999999999999999999999 9999999
Q ss_pred eccC
Q psy4080 255 FSVT 258 (403)
Q Consensus 255 ~a~~ 258 (403)
|+.+
T Consensus 193 ~a~~ 196 (198)
T 1qm9_A 193 FSKS 196 (198)
T ss_dssp EECC
T ss_pred eecc
Confidence 9865
No 197
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.52 E-value=3.6e-14 Score=130.28 Aligned_cols=112 Identities=15% Similarity=0.199 Sum_probs=90.8
Q ss_pred CCCceeeeechhhHHHHHHHHHhHh--------hhhCC-----------------------------------CCCCCCC
Q psy4080 143 GGRGKIIIAVVTEVEEEAEATAMVE--------EFADG-----------------------------------RENPQPS 179 (403)
Q Consensus 143 ~g~g~~~~~~~~~~~~~~~~~~~~~--------~~~~~-----------------------------------~~~~~~~ 179 (403)
.|++|+.|...++++.+.+...... ..... .....+.
T Consensus 72 ~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (229)
T 2adc_A 72 KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPS 151 (229)
T ss_dssp SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCC
Confidence 5789999999999998887543100 00000 0112346
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCC-CeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC-CeEEEEEecc
Q psy4080 180 RCLGVFGLSIYTTEQQINHIFSKYG-PVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEID-GRQIRVDFSV 257 (403)
Q Consensus 180 ~~l~V~nLp~~~te~~L~~~F~~~G-~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~-g~~i~V~~a~ 257 (403)
++|||+|||.++|+++|+++|++|| .|..|.|+.+ .+|||||+|.+.++|.+|++.|+|..+. |+.|.|.|+.
T Consensus 152 ~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 152 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp SEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred CEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence 8999999999999999999999999 9999999653 3679999999999999999999999999 9999999986
Q ss_pred CC
Q psy4080 258 TQ 259 (403)
Q Consensus 258 ~~ 259 (403)
++
T Consensus 227 ~~ 228 (229)
T 2adc_A 227 ST 228 (229)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 198
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.50 E-value=8.3e-14 Score=131.52 Aligned_cols=78 Identities=24% Similarity=0.419 Sum_probs=72.1
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC-CeEEEE
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEID-GRQIRV 253 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~-g~~i~V 253 (403)
...+.++|||+|||.++|+++|+++|++||.|..|.|+.++ +|||||+|.+.++|.+||+.|||..|. |+.|+|
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 277 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKI 277 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEE
Confidence 34567899999999999999999999999999999998654 579999999999999999999999999 999999
Q ss_pred Eecc
Q psy4080 254 DFSV 257 (403)
Q Consensus 254 ~~a~ 257 (403)
.|++
T Consensus 278 ~~ak 281 (282)
T 3pgw_A 278 SFAK 281 (282)
T ss_pred EEec
Confidence 9985
No 199
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.48 E-value=1e-13 Score=111.62 Aligned_cols=81 Identities=22% Similarity=0.283 Sum_probs=71.1
Q ss_pred CCCCEEEEcCC--CCCC--------cHHHHHHHhhcCCCeEEEEEEeeCCC--CCcceEEEEEecCHHHHHHHHHHhCCc
Q psy4080 177 QPSRCLGVFGL--SIYT--------TEQQINHIFSKYGPVERVEVVIDAKT--GRSRGFCFVYFESRDDAAAAKDACTGM 244 (403)
Q Consensus 177 ~~~~~l~V~nL--p~~~--------te~~L~~~F~~~G~i~~v~i~~d~~t--g~~rG~afV~f~~~~~a~~Al~~l~g~ 244 (403)
.+++.|.|.|+ |..+ .+++|++.|++||+|.+|.|++++.+ +.++|||||+|.+.++|.+|++.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46789999998 3333 34799999999999999999988754 468999999999999999999999999
Q ss_pred eeCCeEEEEEecc
Q psy4080 245 EIDGRQIRVDFSV 257 (403)
Q Consensus 245 ~l~g~~i~V~~a~ 257 (403)
.++|+.|.|.++.
T Consensus 83 ~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 83 KFANRVVVTKYCD 95 (105)
T ss_dssp EETTEECEEEEEC
T ss_pred EeCCCEEEEEEeC
Confidence 9999999999874
No 200
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.47 E-value=2.4e-14 Score=115.14 Aligned_cols=72 Identities=24% Similarity=0.352 Sum_probs=64.4
Q ss_pred EcCCCCCCcHHHHHHHh------------hcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q psy4080 184 VFGLSIYTTEQQINHIF------------SKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQI 251 (403)
Q Consensus 184 V~nLp~~~te~~L~~~F------------~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i 251 (403)
+.|||+.+++++|+++| ++||+|.+|.|+.+. ++.++|||||+|.+.++|.+|++.|||..++|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56777788888777666 999999999999875 47899999999999999999999999999999999
Q ss_pred EEEec
Q psy4080 252 RVDFS 256 (403)
Q Consensus 252 ~V~~a 256 (403)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 201
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.47 E-value=2.4e-13 Score=111.69 Aligned_cols=80 Identities=19% Similarity=0.201 Sum_probs=71.2
Q ss_pred CCCEEEEcCCCC--C---CcHHHHHHHhhcCCCeEEEEEEeeCC----CCCcceEEEEEecCHHHHHHHHHHhCCceeCC
Q psy4080 178 PSRCLGVFGLSI--Y---TTEQQINHIFSKYGPVERVEVVIDAK----TGRSRGFCFVYFESRDDAAAAKDACTGMEIDG 248 (403)
Q Consensus 178 ~~~~l~V~nLp~--~---~te~~L~~~F~~~G~i~~v~i~~d~~----tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g 248 (403)
++++|+|.|+-. + -.+++|++.|++||+|.+|.|+.++. ++.++|||||+|.+.++|.+|++.|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 678999999832 2 24689999999999999999999865 46788999999999999999999999999999
Q ss_pred eEEEEEecc
Q psy4080 249 RQIRVDFSV 257 (403)
Q Consensus 249 ~~i~V~~a~ 257 (403)
+.|.|.++.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999873
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.7e-12 Score=103.37 Aligned_cols=77 Identities=14% Similarity=0.141 Sum_probs=64.1
Q ss_pred CCEEEEcCCC-------CCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q psy4080 179 SRCLGVFGLS-------IYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQI 251 (403)
Q Consensus 179 ~~~l~V~nLp-------~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i 251 (403)
..+|-|.-.. .++|+++|+++|++||+|.+|.|+ +.++|||||+|.+.++|++||+.++ .+.|++|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV--GLVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeE
Confidence 4566665443 468999999999999999999997 4678999999999999999998744 4689999
Q ss_pred EEEeccCCCCC
Q psy4080 252 RVDFSVTQRAH 262 (403)
Q Consensus 252 ~V~~a~~~~~~ 262 (403)
.|.|+..+...
T Consensus 83 ~V~~a~~~~~~ 93 (100)
T 2d9o_A 83 KISWLEGQPQD 93 (100)
T ss_dssp EEECSSCCCCC
T ss_pred EEEEccCCCCC
Confidence 99999776543
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.38 E-value=7.4e-13 Score=128.00 Aligned_cols=78 Identities=17% Similarity=0.282 Sum_probs=67.3
Q ss_pred CCCCCCCEEEEcC--CCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC---C
Q psy4080 174 ENPQPSRCLGVFG--LSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEID---G 248 (403)
Q Consensus 174 ~~~~~~~~l~V~n--Lp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~---g 248 (403)
....++++|||+| |++.+||++|+++|++||+|.+|.|.. +||||||+|.+.++|++||++|||..+. |
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g 86 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 86 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccC
Confidence 3467789999999 588999999999999999999987743 4789999999999999999999999873 4
Q ss_pred e--EEEEEecc
Q psy4080 249 R--QIRVDFSV 257 (403)
Q Consensus 249 ~--~i~V~~a~ 257 (403)
+ +|.|.++.
T Consensus 87 ~~~~ly~~~~~ 97 (345)
T 3tht_A 87 QKITLYLNFVE 97 (345)
T ss_dssp CEEECEEEECS
T ss_pred CceEEEEEEee
Confidence 4 67788764
No 204
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.38 E-value=9.7e-13 Score=113.48 Aligned_cols=120 Identities=10% Similarity=-0.020 Sum_probs=81.0
Q ss_pred EEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccCCCCCCCCCCcCCCCCCcccCCCceeeeCC
Q psy4080 208 RVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTYEQLNNTQSELGS 287 (403)
Q Consensus 208 ~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~ 287 (403)
.+.|+.+.. .++|||||+|.+.++|++|++.+++....+..+.+.............. ............+|||+|
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~v~n 77 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSH--HHHHHMDVEGMTSLKVDN 77 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCC--CSSCCCCCCBCCEEEEES
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCcccccccccccc--ccccccCCCCCCEEEEeC
Confidence 466777644 6899999999999999999988876443222333322111100000000 001112234467899999
Q ss_pred CCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 288 LLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 288 l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
|+..+++.++.++|+.|| .|..|.++.+..++.++|||||+|..
T Consensus 78 l~~~~~~~~l~~~F~~~G---~v~~~~i~~~~~~g~~~g~afV~f~~ 121 (158)
T 2kn4_A 78 LTYRTSPDTLRRVFEKYG---RVGDVYIPRDRYTKESRGFAFVRFHD 121 (158)
T ss_dssp CCTTCCHHHHHHHHHHHS---CEEEEECCCCSSCTTSCCEEEEEESB
T ss_pred CCCCCCHHHHHHHHHhcC---CeEEEEEeecCCCCccceEEEEEECC
Confidence 999988888777777776 56778899888899999999999975
No 205
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.29 E-value=1e-11 Score=101.21 Aligned_cols=78 Identities=21% Similarity=0.252 Sum_probs=66.5
Q ss_pred CCCCCEEEEcCCCCCC----------cHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCce
Q psy4080 176 PQPSRCLGVFGLSIYT----------TEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGME 245 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~~----------te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~ 245 (403)
+.+++.|.|.|+=... .+++|++.|++||.|.+|.|.++. ++|||||+|.+.++|.+|++.|||..
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4568899999973221 246889999999999999986542 58999999999999999999999999
Q ss_pred eCCeEEEEEecc
Q psy4080 246 IDGRQIRVDFSV 257 (403)
Q Consensus 246 l~g~~i~V~~a~ 257 (403)
++|+.|.|.++.
T Consensus 80 f~GR~i~v~~~~ 91 (114)
T 3s6e_A 80 FAGKMITAAYVP 91 (114)
T ss_dssp ETTEECEEEEEC
T ss_pred ECCEEEEEEEEc
Confidence 999999999974
No 206
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.24 E-value=8.5e-12 Score=106.69 Aligned_cols=109 Identities=10% Similarity=-0.025 Sum_probs=80.7
Q ss_pred CCCcceEEEEEecCHHHHHHHHHHh-CCceeCCeEEEEEeccCCCCCCCCC-CcCCCCCCcccCCCceeeeCCCCCcccc
Q psy4080 217 TGRSRGFCFVYFESRDDAAAAKDAC-TGMEIDGRQIRVDFSVTQRAHTPTP-GIYMGRPTYEQLNNTQSELGSLLSEKHA 294 (403)
Q Consensus 217 tg~~rG~afV~f~~~~~a~~Al~~l-~g~~l~g~~i~V~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vg~l~~~~~~ 294 (403)
....+|+++|+|.+.++|++|+++| ||..++| .|.|.++.......... ...............+|||+||+..+++
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~ 87 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNK 87 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSC
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCH
Confidence 3467899999999999999999999 9999999 99999876532111110 0001111233445689999999999999
Q ss_pred chHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 295 IKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 295 ~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.++.++|+.|| .|..|.++.+ ++|||||+|..
T Consensus 88 ~~l~~~F~~~G---~i~~v~i~~~-----~~g~afV~f~~ 119 (150)
T 2i2y_A 88 TELERAFGYYG---PLRSVWVARN-----PPGFAFVEFED 119 (150)
T ss_dssp HHHHHHHHHHS---CEEEEEECSS-----SCSEEEEEESS
T ss_pred HHHHHHHHhhC---CEEEEEEeeC-----CCcEEEEEECC
Confidence 88888888776 4566677754 68999999975
No 207
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.14 E-value=1.1e-10 Score=95.52 Aligned_cols=76 Identities=14% Similarity=0.236 Sum_probs=68.0
Q ss_pred CCCCCCEEEEcCCCCC-CcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecC-HHHHHHHHHHhC--CceeCCeE
Q psy4080 175 NPQPSRCLGVFGLSIY-TTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFES-RDDAAAAKDACT--GMEIDGRQ 250 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~-~~~a~~Al~~l~--g~~l~g~~ 250 (403)
.-.+++.|||+||+.+ +++++|+++|++||+|..|.++.+.. .|||.|.+ +++|..|+++|+ +..|.|..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 3467899999999999 99999999999999999999988765 69999999 899999999994 67789988
Q ss_pred EEEEec
Q psy4080 251 IRVDFS 256 (403)
Q Consensus 251 i~V~~a 256 (403)
+++...
T Consensus 88 ~~~evL 93 (121)
T 1owx_A 88 VTWEVL 93 (121)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 888764
No 208
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.10 E-value=1.8e-10 Score=88.63 Aligned_cols=73 Identities=19% Similarity=0.189 Sum_probs=62.5
Q ss_pred CCCCEEEEcCCCC----CCcH----HHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC
Q psy4080 177 QPSRCLGVFGLSI----YTTE----QQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDG 248 (403)
Q Consensus 177 ~~~~~l~V~nLp~----~~te----~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g 248 (403)
++..||+|.-++. ++-. .+|.+.|.+||+|..++++.+ .+||+|.+.++|.+||+ |||..+.|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d--------~~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED--------KMWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS--------SEEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC--------CEEEEECChHHHHHHHh-cCCeEeCC
Confidence 5667899887762 3333 678899999999999999887 38999999999999997 99999999
Q ss_pred eEEEEEeccC
Q psy4080 249 RQIRVDFSVT 258 (403)
Q Consensus 249 ~~i~V~~a~~ 258 (403)
+.|+|+++.+
T Consensus 76 r~LkV~lkt~ 85 (91)
T 2dnr_A 76 RTITIALKSP 85 (91)
T ss_dssp EEEEEEECCC
T ss_pred eEEEEEeCCC
Confidence 9999999854
No 209
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.89 E-value=2.2e-10 Score=114.84 Aligned_cols=138 Identities=14% Similarity=0.081 Sum_probs=77.0
Q ss_pred CCCCCCcHHHHHHHhhcCCCeEEEEEEe----eC-CCCCcceEE--EEEecCHHHHHHHHHHhCCceeCCeEEEEEecc-
Q psy4080 186 GLSIYTTEQQINHIFSKYGPVERVEVVI----DA-KTGRSRGFC--FVYFESRDDAAAAKDACTGMEIDGRQIRVDFSV- 257 (403)
Q Consensus 186 nLp~~~te~~L~~~F~~~G~i~~v~i~~----d~-~tg~~rG~a--fV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~- 257 (403)
.||++ |.++|.++|+|..|..+. ++ .+....|++ |++|....++..++..++...+..+........
T Consensus 4 ~lPp~-----L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~ 78 (437)
T 3pgw_S 4 FLPPN-----LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERR 78 (437)
T ss_pred cCCcc-----HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHH
Confidence 35654 788999999998873322 22 222233444 888877665554443322222111100000000
Q ss_pred ----CCCCCCCCCCcCCCCCCcccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeec
Q psy4080 258 ----TQRAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFS 333 (403)
Q Consensus 258 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~ 333 (403)
........+. ...........+|||+||+..+++.+|.++|..| |.|+.|.|+.+..++.++|||||+|.
T Consensus 79 ~~~~~~~~~~~~p~---~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~---G~I~~v~i~~d~~tg~~kG~aFV~F~ 152 (437)
T 3pgw_S 79 QQEVETELKMWDPH---NDPNAQGDAFKTLFVARVNYDTTESKLRREFEVY---GPIKRIHMVYSKRSGKPRGYAFIEYE 152 (437)
T ss_pred HHHHHHhhhhcCCc---ccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHc---CCeeEEEeeccCCCCCccceEEEeec
Confidence 0000000000 0011122345789999999988777766666555 56677888988889999999999997
Q ss_pred c
Q psy4080 334 G 334 (403)
Q Consensus 334 ~ 334 (403)
.
T Consensus 153 ~ 153 (437)
T 3pgw_S 153 H 153 (437)
T ss_pred c
Confidence 4
No 210
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.88 E-value=2.2e-09 Score=82.93 Aligned_cols=72 Identities=18% Similarity=0.242 Sum_probs=61.8
Q ss_pred CCCCCEEEEcCCCCC-----CcH----HHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCcee
Q psy4080 176 PQPSRCLGVFGLSIY-----TTE----QQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEI 246 (403)
Q Consensus 176 ~~~~~~l~V~nLp~~-----~te----~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l 246 (403)
.++..||+|.-++.. +-. .+|.+.|.+||+|..++++.|+ +||+|.+.++|.+||+ |||..+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 466789999988743 222 5688999999999999999873 9999999999999997 999999
Q ss_pred CCeEEEEEec
Q psy4080 247 DGRQIRVDFS 256 (403)
Q Consensus 247 ~g~~i~V~~a 256 (403)
+|+.|+|.+.
T Consensus 83 ~Gr~L~V~~k 92 (95)
T 1ufw_A 83 KGRAVKISGP 92 (95)
T ss_dssp TTEEEEEECC
T ss_pred CCeEEEEecc
Confidence 9999999864
No 211
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.83 E-value=7.2e-09 Score=94.20 Aligned_cols=79 Identities=19% Similarity=0.206 Sum_probs=66.1
Q ss_pred CCEEEEcCCC-----CCCcHHHHHHHhhcCCCeEEEEEEeeCC----CCCcceEEEEEecCHHHHHHHHHHhCCceeCCe
Q psy4080 179 SRCLGVFGLS-----IYTTEQQINHIFSKYGPVERVEVVIDAK----TGRSRGFCFVYFESRDDAAAAKDACTGMEIDGR 249 (403)
Q Consensus 179 ~~~l~V~nLp-----~~~te~~L~~~F~~~G~i~~v~i~~d~~----tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~ 249 (403)
...+.+.|+- ..-.+++|.+.|++||.|.+|.|+.+.. ++.++|++||+|.+.++|.+|++.|||..++|+
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 3455555542 2345689999999999999999986644 458999999999999999999999999999999
Q ss_pred EEEEEecc
Q psy4080 250 QIRVDFSV 257 (403)
Q Consensus 250 ~i~V~~a~ 257 (403)
.|.|.++.
T Consensus 204 ~i~~~~~~ 211 (222)
T 3dxb_A 204 KVVAEVYD 211 (222)
T ss_dssp BCEEEECC
T ss_pred EEEEEEcC
Confidence 99999873
No 212
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.63 E-value=2.4e-08 Score=83.64 Aligned_cols=93 Identities=15% Similarity=0.088 Sum_probs=46.5
Q ss_pred EEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccCCCCCCCCCCcCCCCCCcccCCCceeeeCCCCCccccchHHHHHH
Q psy4080 223 FCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEKHAIKGGKFEE 302 (403)
Q Consensus 223 ~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~ 302 (403)
++|++|.+...+..||+.|+|....|.. .+.+ +.+........+|||+||+..+++.++.++|+
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~---------------~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~ 69 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSY---------------GRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFE 69 (135)
T ss_dssp ------------------------------CCS---------------CCSCSSGGGCCCEEEECCCSSCHHHHHHHHHG
T ss_pred cccccccCCCchhhhhhhccCCCCCCCC-CCCc---------------CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 6788888888899999988887766543 1111 11223334567899999999988888777777
Q ss_pred hcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 303 VFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 303 ~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.||+ |+.|.++.+..++.++|||||+|..
T Consensus 70 ~~G~---i~~v~i~~~~~~g~~~G~afV~F~~ 98 (135)
T 2lea_A 70 KYGR---VGDVYIPRDRYTKESRGFAFVRFHD 98 (135)
T ss_dssp GGSC---CSEEECCCCSSSSSCCSCCEEECSC
T ss_pred hcCC---EEEEEEEecCCCCccceEEEEEECC
Confidence 6664 5566788888889999999999974
No 213
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.48 E-value=9.3e-08 Score=82.78 Aligned_cols=106 Identities=8% Similarity=-0.020 Sum_probs=44.9
Q ss_pred EEecCHHHHHHHHHHhCCceeC--CeEEEEEeccCCCCCC--CC---CCcCCCCCCcccCCCceeeeCCCCCccccchHH
Q psy4080 226 VYFESRDDAAAAKDACTGMEID--GRQIRVDFSVTQRAHT--PT---PGIYMGRPTYEQLNNTQSELGSLLSEKHAIKGG 298 (403)
Q Consensus 226 V~f~~~~~a~~Al~~l~g~~l~--g~~i~V~~a~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~vg~l~~~~~~~~~~ 298 (403)
.+|.+.++|..|+..|++.... |+.+.+.++....... .. ................+|||+||+..+++.+|.
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 7899999999999998887654 6666665532211100 00 000011122233456789999999987777766
Q ss_pred HHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 299 KFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 299 ~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
++|..| |.|..|.++.+..++.++|||||+|..
T Consensus 91 ~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~ 123 (165)
T 1rk8_A 91 EKFCDY---GEIKNIHLNLDRRTGFSKGYALVEYET 123 (165)
T ss_dssp HHHGGG---SCEEEEEEEECTTTSSEEEEEEEEESS
T ss_pred HHhhcC---CCEEEEEEEecCCCCcEeeEEEEEECC
Confidence 666555 567788899988899999999999975
No 214
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.46 E-value=2.6e-07 Score=77.74 Aligned_cols=94 Identities=11% Similarity=0.007 Sum_probs=41.2
Q ss_pred eEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccCCCCCCCCCCcCCCCCCcccCCCceeeeCCCCCccccchHHHHH
Q psy4080 222 GFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEKHAIKGGKFE 301 (403)
Q Consensus 222 G~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~ 301 (403)
|+||.+|.-++.+..++..+... ..|...--.... ...........+|||+||+..+++.+|+++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~g~-------------~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F 67 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGSGD-------------SEFTVQSTTGHCVHMRGLPYKATENDIYNFF 67 (139)
T ss_dssp ---------------------------------------------------------CCCCEECCSCCTTCCHHHHHHHH
T ss_pred CcccccccCccccchhcccchhc-cCCCCCCCCCCC-------------cccCCCCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 68899999888888777654322 222221100000 0001223345789999999998888877766
Q ss_pred HhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 302 EVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 302 ~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
+.|| |+.|.|+++.+ +.++|||||+|+.
T Consensus 68 ~~~G----i~~v~i~~d~~-g~srGfaFV~F~~ 95 (139)
T 2hgn_A 68 SPLN----PVRVHIEIGPD-GRVTGEADVEFAT 95 (139)
T ss_dssp CSCC----CSEEECCCSSS-SCSSCCCEEECSH
T ss_pred HhcC----CeEEEEEECCC-CCCceEEEEEeCC
Confidence 6665 34788888865 8999999999974
No 215
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=98.40 E-value=2.4e-07 Score=73.15 Aligned_cols=53 Identities=6% Similarity=-0.095 Sum_probs=44.1
Q ss_pred CCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 279 NNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 279 ~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
..++|||+|||..+++.++.++|+.| |.|+.|.++++..++.++|||||+|..
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~---G~I~~v~i~~d~~tg~~kG~afV~f~~ 70 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSI---GEVESAKLIRDKVAGHSLGYGFVNYVT 70 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTT---SCEEEEEEEECSSSCCEEEEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc---CCEEEeEeeecCCCCcccccEEEEECC
Confidence 34689999999998887766666655 567788899999999999999999975
No 216
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=98.37 E-value=8.6e-08 Score=75.23 Aligned_cols=55 Identities=11% Similarity=0.027 Sum_probs=45.0
Q ss_pred CCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 279 NNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 279 ~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.-.+|||+||+..++++++.++|+.||.+. |..|.+++|..++.++|||||+|..
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~-v~~v~i~~d~~tg~srG~aFV~f~~ 62 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLA-VNNIRLIKDKQTQQNRGFAFVQLSS 62 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCC-GGGEECCCCSSSSSCSSEEEEECSS
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCcc-EEEEEEEecCCCCCCceEeEEEECC
Confidence 446899999999988888777777776542 4467889999999999999999975
No 217
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.33 E-value=3.2e-06 Score=66.59 Aligned_cols=72 Identities=18% Similarity=0.214 Sum_probs=66.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcC-----CCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q psy4080 177 QPSRCLGVFGLSIYTTEQQINHIFSKY-----GPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQI 251 (403)
Q Consensus 177 ~~~~~l~V~nLp~~~te~~L~~~F~~~-----G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i 251 (403)
...++|-+-|||..++.+.|+.+++++ |.|+.|.++.|.. =|+|+|.+...|-+|.-+|+|.+|.|+.|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 446889999999999999999999999 9999999998854 79999999999999988999999999999
Q ss_pred EEE
Q psy4080 252 RVD 254 (403)
Q Consensus 252 ~V~ 254 (403)
+|.
T Consensus 93 r~g 95 (117)
T 2l9w_A 93 RSG 95 (117)
T ss_dssp EEE
T ss_pred Eec
Confidence 986
No 218
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=98.30 E-value=4.8e-07 Score=72.88 Aligned_cols=53 Identities=8% Similarity=0.005 Sum_probs=43.3
Q ss_pred CCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 279 NNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 279 ~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
...+|||+||+..+++.+|.++ |+++|.|..|.++++..++.++|||||+|..
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~---F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~ 57 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDM---CRKYGEVEEVEILLHPRTRKHLGLARVLFTS 57 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHH---HTTTSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred CCcEEEEECCCCCCCHHHHHHH---HHhcCCeeEEEEEECCCCCceeeEEEEEECC
Confidence 4578999999988777665555 5555677888899999999999999999975
No 219
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=98.28 E-value=9.5e-07 Score=67.50 Aligned_cols=55 Identities=11% Similarity=0.105 Sum_probs=44.4
Q ss_pred cCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 277 QLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 277 ~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.....+|||+||+..+++.++.++ |..+|.|..|.++.+..++.++|+|||+|..
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~---F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~ 62 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDY---FTKFGEVVDCTIKMDPNTGRSRGFGFILFKD 62 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHH---HTTTSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHH---HHhCCCEEEEEEeecCCCCccccEEEEEECC
Confidence 445689999999988776665555 5555677888899998899999999999975
No 220
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.27 E-value=1.1e-06 Score=68.93 Aligned_cols=55 Identities=11% Similarity=0.110 Sum_probs=44.3
Q ss_pred cCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 277 QLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 277 ~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.....+|||+||+..+++.++.++ |..+|.|+.|.++.+..++.+++||||+|..
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~---F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 61 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREY---FKKFGVVTEVVMIYDAEKQRPRGFGFITFED 61 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHH---HSSSSCEEEEEECCCTTTCSCCSEEEEEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHH---HHhcCCeEEEEEEeCCCCCCCCceEEEEECC
Confidence 445689999999988777665554 5555678888899988899999999999975
No 221
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=98.26 E-value=1.9e-06 Score=71.41 Aligned_cols=58 Identities=12% Similarity=-0.003 Sum_probs=46.8
Q ss_pred ccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 276 EQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 276 ~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
......+|||+||+..+++.+++++|+.||.+.. ..|.++++..++.++|||||+|..
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~-~~v~i~~d~~tg~~rG~aFV~f~~ 76 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSS-SNVRVIKDKQTQLNRGFAFIQLST 76 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCT-TTEECCBCSSSSSBCSCEEEECCH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-eeEEEEEcCCCCCcceEEEEEECC
Confidence 3455689999999999999988888887776643 116788888899999999999975
No 222
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.26 E-value=9.4e-07 Score=70.27 Aligned_cols=53 Identities=9% Similarity=0.024 Sum_probs=43.2
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....+|||+|||..+++.++.++|+.|| .|..|.++++.. +.++|||||+|..
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G---~v~~v~i~~d~~-g~~rG~aFV~F~~ 61 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKG---QVLNIQMRRTLH-KAFKGSIFVVFDS 61 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSS---CEEEEEEECCCT-TSCCCEEEEEESS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcC---CEEEEEEEECCC-CCCccEEEEEECC
Confidence 3457899999999988888776666655 667888998877 8999999999964
No 223
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=98.24 E-value=1.9e-07 Score=72.51 Aligned_cols=52 Identities=12% Similarity=-0.043 Sum_probs=44.4
Q ss_pred ceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 281 TQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 281 ~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.+|||+|||..+++.++.++|+.||. .|+.|.++++..++.++|||||+|..
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~--~v~~v~i~~d~~t~~~rg~aFV~F~~ 53 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGV--QAREVRLMRNKSSGQSRGFAFVEFSH 53 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTC--CCSBCCSSSCSSSCCCSSEEEEECSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCC--EeEEEEEEecCCCCCcCceEEEEecC
Confidence 57999999999999998888888872 34456788898999999999999975
No 224
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.23 E-value=1.1e-06 Score=69.36 Aligned_cols=57 Identities=9% Similarity=-0.017 Sum_probs=45.1
Q ss_pred cccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 275 YEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 275 ~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.......+|||+||+..+++.++.++ |..+|.|+.|.++.+..++.+++||||+|..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~---f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 64 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRV---FEKYGRVGDVYIPREPHTKAPRGFAFVRFHD 64 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHH---HTTTSCEEEEECCBCSSSCSBCSCEEEEESS
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHH---HHhcCCEEEEEEEeCCCCCCCCeEEEEEECC
Confidence 33455689999999988777665555 5555678888899998889999999999975
No 225
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.23 E-value=4.9e-07 Score=74.40 Aligned_cols=55 Identities=16% Similarity=-0.024 Sum_probs=47.8
Q ss_pred CCceeeeCCCCCccccchHHHHHHhcCCc-ceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 279 NNTQSELGSLLSEKHAIKGGKFEEVFGEI-ATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 279 ~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~-g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
...+|||+||+..+++.+++++|+.||.+ +.|..|.|+++ .++.++|||||+|..
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~ 77 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFAC 77 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECC
Confidence 45789999999999999999999999987 46667788887 588999999999964
No 226
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=98.22 E-value=3.6e-07 Score=73.04 Aligned_cols=56 Identities=5% Similarity=-0.183 Sum_probs=48.3
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....+|||+||+..+++.++.++|..||.++.|..|.++++.. +.++|||||+|..
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~ 64 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMES 64 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSS
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECC
Confidence 4567899999999999999888888888766678888998877 8999999999974
No 227
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.22 E-value=1.8e-06 Score=68.44 Aligned_cols=57 Identities=11% Similarity=0.018 Sum_probs=46.1
Q ss_pred ccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeeccc
Q psy4080 276 EQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSGG 335 (403)
Q Consensus 276 ~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~a 335 (403)
......+|||+||+..+++.++.++|+.|| .|+.|.++.+..++.+++||||+|...
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G---~v~~v~i~~~~~~g~~~g~afV~f~~~ 68 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYG---EVVDCVIMKDKTTNQSRGFGFVKFKDP 68 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTS---CEEEEEEEECSSSCCEEEEEEEEESST
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC---CeEEEEEeeCCCCCCcceEEEEEECCH
Confidence 345668999999999988777666666655 677788999888999999999999753
No 228
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.19 E-value=5.8e-07 Score=73.27 Aligned_cols=56 Identities=13% Similarity=-0.036 Sum_probs=46.6
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....+|||+||+..+++.++.++|+.||.++.|..|.++++.. +.++|||||+|..
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~ 70 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELES 70 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECC
Confidence 4467899999999998888888877777755577888888866 8899999999964
No 229
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=98.17 E-value=8.3e-07 Score=70.03 Aligned_cols=52 Identities=6% Similarity=-0.070 Sum_probs=41.9
Q ss_pred CceeeeCCCCC------ccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 280 NTQSELGSLLS------EKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 280 ~~~~~vg~l~~------~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
..+|||+|||. ..++.++.+ .|+.+|.|..|.++++..++.++|||||+|..
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~---~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~ 63 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTS---LFSKAGKVVNMEFPIDEATGKTKGFLFVECGS 63 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHH---HHHTTSCEEEEECCEETTTTEECSEEEEEESS
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHH---HHHhcCCEeEEEEEEcCCCCccceEEEEEECC
Confidence 46899999998 655555554 45555678889999999999999999999975
No 230
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.17 E-value=2.9e-06 Score=67.00 Aligned_cols=55 Identities=11% Similarity=0.048 Sum_probs=44.7
Q ss_pred cCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 277 QLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 277 ~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.....+|||+||+..+++.++.++|..|| .|+.|.++.+..++.++|||||+|..
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G---~i~~v~i~~~~~~g~~~g~afV~f~~ 66 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFG---EVLMVQVKKDLKTGHSKGFGFVRFTE 66 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGS---CEEEEEEEECSSSCSEEEEEEEEESS
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcC---CeEEEEEEecCCCCCccceEEEEECC
Confidence 34567899999999887777666666554 67788899988899999999999975
No 231
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.16 E-value=2.4e-06 Score=67.45 Aligned_cols=56 Identities=9% Similarity=0.162 Sum_probs=46.1
Q ss_pred ccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 276 EQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 276 ~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
......+|||+||+..+++.+ |.+.|..+|.|+.|.++.+..++.+++||||+|..
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~---l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 66 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETD---LQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHR 66 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHH---HHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESS
T ss_pred CCCCCCEEEEeCCCCCCCHHH---HHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECC
Confidence 345568999999998765555 66777777788899999998899999999999974
No 232
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=98.16 E-value=2.3e-06 Score=67.93 Aligned_cols=56 Identities=11% Similarity=0.066 Sum_probs=46.8
Q ss_pred ccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 276 EQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 276 ~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
......+|||+||+..+++.++.++|+.||++ ..|.++.+..++.+++||||+|..
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i---~~v~i~~~~~~g~~~g~afV~f~~ 64 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKI---YELTVLKDRFTGMHKGCAFLTYCE 64 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCC---CEEECCCCSSSCSCCSEEEEEESS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe---eEEEEEecCCCCCcceEEEEEECC
Confidence 34556889999999999999888888888754 466788888899999999999974
No 233
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.16 E-value=2.5e-06 Score=64.74 Aligned_cols=53 Identities=8% Similarity=0.058 Sum_probs=44.3
Q ss_pred CCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 279 NNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 279 ~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
...+|||+||+..+++.+ |.+.|..+|.|..+.++.+..++.++|||||+|..
T Consensus 4 ~~~~l~v~nlp~~~t~~~---l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~ 56 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQD---LVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDS 56 (85)
T ss_dssp CCCEEEEESCCTTCCHHH---HHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESC
T ss_pred CCcEEEEeCCCCCCCHHH---HHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECC
Confidence 457899999998765555 66677777788899999998899999999999975
No 234
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=98.16 E-value=1.6e-06 Score=69.58 Aligned_cols=55 Identities=11% Similarity=0.076 Sum_probs=42.0
Q ss_pred cCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 277 QLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 277 ~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.....+|||+||+..+++.++.++ |+.+|.|..|.++.+..++.++|||||+|..
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~---F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~ 76 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREY---FGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 76 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHH---HTTTSCEEEEEECCCTTTCCCTTCEEEEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHH---HHccCCeEEEEEEECCCCCCcCcEEEEEECC
Confidence 345688999999988777665554 5555677888899998899999999999974
No 235
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=98.15 E-value=2.1e-06 Score=73.62 Aligned_cols=55 Identities=9% Similarity=-0.037 Sum_probs=45.9
Q ss_pred CCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 279 NNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 279 ~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
...+|||+||+..+++.++.++|+.||.+ .|..|.++.+..++.++|||||+|..
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i-~v~~v~i~~d~~tg~skGfaFV~f~~ 108 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVY-DVVELKFAENRANGQSKGYAEVVVAS 108 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCC-CEEEEEEEECTTTCCEEEEEEEEESC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCc-cEEEEEEEecCCCCccceEEEEEECC
Confidence 45789999999999888888888777633 57788899999999999999999974
No 236
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=98.15 E-value=8.9e-07 Score=68.32 Aligned_cols=53 Identities=6% Similarity=-0.008 Sum_probs=41.7
Q ss_pred ceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 281 TQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 281 ~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.+|||+||+..+++.++.++|+.|| ...|..+.++.+..++.++|||||+|..
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G-~~~v~~v~i~~~~~~g~~kG~afV~f~~ 54 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLG-VNDILEIKFFENRANGQSKGFALVGVGS 54 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTT-CCCCCCEEEEECTTTCCEEEEEEECC-C
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhC-CCceEEEEEEecCCCCccCcEEEEEECC
Confidence 3699999999988888888777776 1145567788888899999999999974
No 237
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=98.15 E-value=5.2e-06 Score=67.22 Aligned_cols=56 Identities=13% Similarity=0.055 Sum_probs=45.7
Q ss_pred ccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 276 EQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 276 ~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
......+|||+||+..+++.+ |.+.|..+|.|+.|.++.+..++.+++|+||+|..
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~---l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~ 91 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTD---LASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDN 91 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHH---HHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEES
T ss_pred CCCCCCEEEEeCCCCCCCHHH---HHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECC
Confidence 344568899999998866555 66666777788899999998899999999999975
No 238
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.15 E-value=3.2e-06 Score=68.32 Aligned_cols=56 Identities=14% Similarity=0.102 Sum_probs=45.8
Q ss_pred ccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 276 EQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 276 ~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
......+|||+||+..+++.++.++|+.|| .|+.|.++.+..++.+++||||+|..
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G---~i~~v~i~~~~~~~~~~g~afV~f~~ 68 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFG---DIEEAVVITDRQTGKSRGYGFVTMAD 68 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTS---CEEEEEESCCSSSCCCCSEEEEEESS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCC---CeeEEEEEEcCCCCccceEEEEEECC
Confidence 345568999999999988877666666555 57788899988899999999999974
No 239
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.14 E-value=2.5e-06 Score=68.78 Aligned_cols=54 Identities=11% Similarity=0.083 Sum_probs=43.5
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....+|||+||+..+++.++. ++|..+|.|+.|.++.+..++.++|||||+|..
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~ 76 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLE---DFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCE 76 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHH---HHHTTTSCEEEEEECCSCCSSSCCCCEEEEESC
T ss_pred CCCCEEEEeCCCCCCCHHHHH---HHHHhCCCEeEEEEEecCCCCccCcEEEEEeCc
Confidence 345789999999887766655 555556678888999998889999999999975
No 240
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.13 E-value=3.6e-06 Score=65.15 Aligned_cols=55 Identities=11% Similarity=0.109 Sum_probs=44.5
Q ss_pred cCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 277 QLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 277 ~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.....+|||+||+..+++.+ |.+.|..+|.|..|.++.+..++.++++|||+|..
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~---l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~ 67 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNND---LYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLD 67 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHH---HHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESC
T ss_pred CCCCCEEEEECCCCCCCHHH---HHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECC
Confidence 34567899999998866665 55566666778888999998889999999999975
No 241
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=98.13 E-value=1.1e-06 Score=73.60 Aligned_cols=57 Identities=11% Similarity=-0.056 Sum_probs=45.6
Q ss_pred cCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 277 QLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 277 ~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.....+|||+||+..+++.++.++|+.||.++.|..|.++++.. +.++|||||+|+.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~ 97 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGS 97 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECC
Confidence 34567899999999988888777777777643366777888876 8999999999974
No 242
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=98.12 E-value=3.8e-06 Score=67.21 Aligned_cols=56 Identities=13% Similarity=0.074 Sum_probs=44.6
Q ss_pred ccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 276 EQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 276 ~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
......+|||+||+..+++.++. +.|+.+|.|..|.++.+..++.++|||||+|..
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~---~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~ 77 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLR---GIFEPFGRIESIQLMMDSETGRSKGYGFITFSD 77 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHH---HHHTTTSCEEEEEEEEETTTTEEEEEEEEEESC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEEcCCCCccceEEEEEECC
Confidence 34456889999999887666655 455556678888999998899999999999975
No 243
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.12 E-value=3.2e-06 Score=66.92 Aligned_cols=56 Identities=13% Similarity=-0.012 Sum_probs=45.5
Q ss_pred ccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 276 EQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 276 ~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
......+|||+||+..+++.++.++|+.|| .|+.|.++.+..++.+++||||+|..
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G---~i~~v~i~~~~~~~~~~g~afV~f~~ 66 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAG---PVVNTHMPKDRVTGQHQGYGFVEFLS 66 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTS---CEEEEECCBCSSSCSBCSCEEEEESS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcC---CeEEEEEEecCCCCcCCcEEEEEECC
Confidence 345568999999999887777666666655 67788899888899999999999975
No 244
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.12 E-value=3.2e-06 Score=67.62 Aligned_cols=55 Identities=15% Similarity=0.072 Sum_probs=44.9
Q ss_pred cCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 277 QLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 277 ~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.....+|||+||+..+++.++.++|..|| .|..|.++.+..++.+++||||+|..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G---~i~~v~i~~~~~~g~~~g~afV~f~~ 66 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFG---DLKYVRVVLHPDTEHSKGCAFAQFMT 66 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTS---CEEEEECCBCSSSCCBCSEEEEEESS
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcC---CeEEEEEEecCCCCCCccEEEEEECC
Confidence 34567899999999987777666666555 67788899998899999999999975
No 245
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=98.10 E-value=2.7e-06 Score=67.50 Aligned_cols=55 Identities=2% Similarity=-0.132 Sum_probs=44.5
Q ss_pred cCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 277 QLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 277 ~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.....+|||+||+..+++.++.++|+.| |.|..|.++.+..++.++|||||+|..
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~ 74 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEY---GEIKNIHLNLDRRTGYLKGYTLVEYET 74 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGG---SCEEEEEEEECTTTSSEEEEEEEEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcc---CCeEEEEEEecCCCCceeeEEEEEECC
Confidence 3456789999999987777766665555 567788899998999999999999975
No 246
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.10 E-value=3.6e-06 Score=65.85 Aligned_cols=55 Identities=11% Similarity=-0.026 Sum_probs=45.0
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....+|||+||+..+++.++.++|+.||++. ..|.++++..++.+++||||+|..
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--~~v~i~~~~~~g~~~g~afV~f~~ 61 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETV--MSVKIIRNRLTGIPAGYCFVEFAD 61 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCC--CEEEEEECSSSCCEEEEEEEECSC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcc--eEEEEeecCCCCCcCCEEEEEeCC
Confidence 3568899999999988888888888777554 056788888899999999999974
No 247
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.10 E-value=4.2e-06 Score=66.40 Aligned_cols=53 Identities=13% Similarity=0.029 Sum_probs=41.7
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEEE-EEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVG-VGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~-v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....+|||+||+..+++.+ |.+.|..++.|.. |.++.+ .++.++|||||+|..
T Consensus 13 ~~~~~l~V~nLp~~~te~~---l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~ 66 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEE---IVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFAS 66 (104)
T ss_dssp SCCCEEEEESCCTTCCHHH---HHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHH---HHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECC
Confidence 4568899999998877666 5555566667765 778887 889999999999974
No 248
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=98.10 E-value=4.3e-06 Score=69.20 Aligned_cols=55 Identities=11% Similarity=-0.009 Sum_probs=44.1
Q ss_pred cCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 277 QLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 277 ~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.....+|||+||+..+++.++.++ |..+|.|+.|.++.+..++..+|||||+|..
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~---F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~ 97 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREV---FSKYGPIADVSIVYDQQSRRSRGFAFVYFEN 97 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHH---HTTTSCEEEEEEECCSSSSCCCCEEEEEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHH---HHhcCCeEEEEEEecCCCCccceEEEEEECC
Confidence 345678999999998777665555 5555677888899998899999999999975
No 249
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.09 E-value=4.2e-06 Score=64.92 Aligned_cols=53 Identities=9% Similarity=-0.005 Sum_probs=42.8
Q ss_pred CCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 279 NNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 279 ~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
...+|||+||+..+++.++.++| ..+|.|..|.++.+..++.++++|||+|..
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f---~~~G~v~~v~i~~~~~~~~~~g~afV~f~~ 56 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIF---EPFGKIDNIVLMKDSDTGRSKGYGFITFSD 56 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHH---TTTSCEEEEEEECCSSSCCCCSEEEEEESC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHH---HhcCCEeEEEEeecCCCCceeeEEEEEECC
Confidence 45789999999887776655555 555677888899988899999999999975
No 250
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=98.09 E-value=4.6e-06 Score=67.19 Aligned_cols=56 Identities=13% Similarity=0.033 Sum_probs=44.9
Q ss_pred ccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 276 EQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 276 ~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
......+|||+||+..+++.++.++|..| |.|..|.++.+..++.+++||||+|..
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~ 66 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPF---GRISDARVVKDMATGKSKGYGFVSFFN 66 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEEcCCCCCcceEEEEEECC
Confidence 34556899999999987777766666555 467788899888899999999999975
No 251
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.09 E-value=3.6e-06 Score=66.50 Aligned_cols=53 Identities=11% Similarity=0.072 Sum_probs=43.1
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....+|||+||+..+++.++.++ |..++ |+.|.++.+..++.++|||||+|..
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~---F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~ 65 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAI---FKDLS-IRSVRLVRDKDTDKFKGFCYVEFDE 65 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHH---TTTSC-EEEEEEEECSSSCSEEEEEEEEESS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHH---HHhCC-ceEEEEeecCCCCccceEEEEEECC
Confidence 44678999999988776665555 55554 8899999998899999999999975
No 252
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=98.09 E-value=2.7e-06 Score=64.84 Aligned_cols=53 Identities=13% Similarity=0.067 Sum_probs=43.0
Q ss_pred CCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 279 NNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 279 ~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
...+|||+||+..+++.++.++|+.|| .|..+.++.+..++.++|+|||+|..
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G---~i~~v~i~~~~~~~~~~g~afV~f~~ 57 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFG---RISDARVVKDMATGKSKGYGFVSFFN 57 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGS---CEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcC---CEeEEEEEecCCCCccceEEEEEECC
Confidence 457899999999877777666666555 57788889888899999999999975
No 253
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=98.08 E-value=2.8e-06 Score=69.74 Aligned_cols=51 Identities=6% Similarity=0.051 Sum_probs=43.4
Q ss_pred ceeeeCCC----CCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 281 TQSELGSL----LSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 281 ~~~~vg~l----~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.+|+|+|| +..+++..++.+|..|| +|..|.+++|++|+.++||+||+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fG---eV~~~~li~Dp~Tg~slGfgfVef~d 57 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYG---EISHFEAFNDPNSALPLHVYLIKYAS 57 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTS---CCSEEEEEECTTTCCEEEEEEEECC-
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcC---CeEEEEEEecCCCCceeeEEEEEECC
Confidence 57999999 99988888888877666 55577899999999999999999973
No 254
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.08 E-value=2.5e-06 Score=67.98 Aligned_cols=48 Identities=6% Similarity=0.012 Sum_probs=38.6
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....+|||+||+..+++.+|+++|+.||++. .|.++++ +|||||+|+.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~---~v~i~~~------kGfaFVeF~~ 61 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVT---NLLMLKG------KNQAFIEMNT 61 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEE---EEEEETT------TTEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE---EEEEEcC------CCEEEEEECC
Confidence 3467899999999999999888888887654 5556643 7999999975
No 255
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=98.08 E-value=6.4e-06 Score=66.38 Aligned_cols=54 Identities=11% Similarity=-0.017 Sum_probs=44.2
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....+|||+||+..+++.++.++|+.||. |+.|.++.+..++.+++||||+|..
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~---i~~v~i~~~~~~g~~~g~afV~f~~ 76 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGN---VVSAKVFIDKQTNLSKCFGFVSYDN 76 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSC---CSEEEEEECSSSCSEEEEEEEECSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCC---eEEEEEEECCCCCCcCccEEEEECC
Confidence 34578999999999888887777777665 4566788888899999999999974
No 256
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.08 E-value=5.1e-06 Score=65.99 Aligned_cols=55 Identities=5% Similarity=-0.034 Sum_probs=41.3
Q ss_pred CCCceeeeCCCCCccccc---hHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAI---KGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~---~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....+|||+||+..+.+. +.++|.+.|+.+|.|+.|.++ ..++.++|||||+|..
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~ 70 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYAS 70 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECS
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECC
Confidence 345789999999876332 445566666666777778787 4788999999999975
No 257
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.07 E-value=1.7e-06 Score=64.27 Aligned_cols=51 Identities=14% Similarity=0.057 Sum_probs=41.4
Q ss_pred ceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 281 TQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 281 ~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.++||+|||..+++.++.++|+.||+ |..+.++.+..++.++|+|||+|..
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~---v~~v~i~~~~~~~~~~g~afV~f~~ 51 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGE---VKECLVMRDPLTKRSRGFGFVTFMD 51 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSC---CCCEEEECCCCSSSCSSEEEECCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCC---EEEEEEecCCCCCCcCceEEEEEcC
Confidence 36899999999888887777666655 5566788888889999999999975
No 258
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.06 E-value=5.2e-06 Score=65.30 Aligned_cols=55 Identities=15% Similarity=0.126 Sum_probs=46.0
Q ss_pred cCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 277 QLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 277 ~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.....+|||+||+..+++.++.++|+.||++ ..|.++.+..++.+++||||+|..
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i---~~v~i~~~~~~~~~~g~afV~f~~ 63 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQI---SEVVVVKDRETQRSRGFGFVTFEN 63 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCC---CEEEECCCSSSCSCCSEEEEECSS
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCe---EEEEEEeCCCCCCcccEEEEEECC
Confidence 3456899999999999988888888887755 566788888889999999999975
No 259
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.06 E-value=4e-06 Score=65.61 Aligned_cols=54 Identities=7% Similarity=-0.068 Sum_probs=44.5
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....+|||+||+..+++.++.++|+.|| .|..|.++.+..++.+++||||+|..
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G---~i~~v~i~~~~~~~~~~g~afV~f~~ 59 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYG---PLSELHYPIDSLTKKPKGFAFVTFMF 59 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTS---CEEEEECCCCTTTCCCCSEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC---CEeEEEEEecCCCCCcCeEEEEEECC
Confidence 4567899999999988877666666655 66788899888899999999999975
No 260
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.06 E-value=5.3e-06 Score=65.84 Aligned_cols=56 Identities=9% Similarity=0.069 Sum_probs=45.1
Q ss_pred ccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeee-CCCCCCcceeeeeecc
Q psy4080 276 EQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTM-TEMSGNGRISPLQFSG 334 (403)
Q Consensus 276 ~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~-~~~~~~~g~~fv~f~~ 334 (403)
......+|||+||+..+++.++.++|+.|| .|+.|.++.+ ..++.+++||||+|..
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G---~i~~v~i~~~~~~~~~~~g~afV~f~~ 67 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFG---ELKTVRLPKKMTGTGAHRGFGFVDFIT 67 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTS---CEEEEECCCCCSSSCSSCSEEEEEESS
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccC---CeEEEEEecCCCCCCCcCceEEEEECC
Confidence 344568899999999988777666666655 6778888888 7799999999999975
No 261
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.06 E-value=5.4e-06 Score=64.20 Aligned_cols=54 Identities=11% Similarity=-0.021 Sum_probs=44.1
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....+|||+||+..+++.++.++|+.|| .|..|.++.+..++.++++|||+|..
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G---~v~~v~i~~~~~~~~~~g~afV~f~~ 66 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYG---PIADVSIVYDQQSRRSRGFAFVYFEN 66 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTS---CEEEEEEEECSSSSSEEEEEEEEESS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcC---CeeEEEEEEcCCCCCcccEEEEEECC
Confidence 4457899999999887777666666555 67778889888889999999999975
No 262
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=98.06 E-value=6.3e-06 Score=68.76 Aligned_cols=56 Identities=13% Similarity=0.086 Sum_probs=46.3
Q ss_pred ccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 276 EQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 276 ~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
......+|||+||+..+++.++.++|+.|| .|+.|.++.+..++.++|||||+|..
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G---~i~~v~i~~~~~~~~~~g~afV~f~~ 93 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYG---PIESVKIVCDRETRQSRGYGFVKFQS 93 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHS---CEEEEEEEEETTTTEEEEEEEEEESS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC---CeEEEEEEEcCCCCCcceEEEEEECC
Confidence 344568999999999988888777777766 56778889998899999999999975
No 263
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=98.06 E-value=3.7e-06 Score=68.02 Aligned_cols=51 Identities=10% Similarity=0.024 Sum_probs=38.7
Q ss_pred CCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 279 NNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 279 ~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
...+|||+||+..+++.+|.++|..| |.|+.|.++.+. +.++|||||+|..
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~---G~v~~v~i~~d~--~~~kg~afV~f~~ 54 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAF---GNILSCKVVCDE--NGSKGYGFVHFET 54 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEEET--TEEEEEEEEEESC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhcc---CCEEEEEEeecC--CCCCceEEEEECC
Confidence 35679999999988777766666655 466777888774 3478999999974
No 264
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=98.05 E-value=4.5e-06 Score=63.24 Aligned_cols=54 Identities=11% Similarity=-0.019 Sum_probs=44.0
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....+|||+||+..+++.++.++|+.| |.|..+.++.+..++..+++|||+|..
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~ 58 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPF---GDITDIQIPLDYETEKHRGFAFVEFEL 58 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGG---SCEEEEECCEETTTTEECSEEEEEESS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhcc---CCEEEEEEEECCCCCccccEEEEEECC
Confidence 356789999999987777766666555 567788899998999999999999975
No 265
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=98.05 E-value=4.1e-06 Score=63.18 Aligned_cols=51 Identities=8% Similarity=0.010 Sum_probs=41.3
Q ss_pred ceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 281 TQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 281 ~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.+|||+||+..+++.++.++ |+.+|.|..+.++.+..++.++++|||+|..
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~---f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~ 52 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNA---FKDFPSYLSGHVMWDMQTGSSRGYGFVSFTS 52 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHH---HTTSTTEEEEEEEECTTTCCEEEEEEEEESC
T ss_pred eEEEEeCCCCCCCHHHHHHH---HHhcCCeeEEEEEEcCCCCCccceEEEEECC
Confidence 47999999988776665555 5555677888899988899999999999975
No 266
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.04 E-value=5.2e-06 Score=65.67 Aligned_cols=53 Identities=13% Similarity=0.081 Sum_probs=42.7
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCC-CCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEM-SGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~-~~~~g~~fv~f~~ 334 (403)
....+|||+||+..+++.+ |.++|..+| |..|.++.+..+ +.++|||||+|..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~---l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~ 66 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEES---IKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFED 66 (104)
T ss_dssp SSCEEEEEESCCSSCCHHH---HHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESS
T ss_pred CCCCEEEEeCCCCcCCHHH---HHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECC
Confidence 3458899999998876666 555555666 889999998887 8999999999975
No 267
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.04 E-value=1.8e-06 Score=67.98 Aligned_cols=55 Identities=13% Similarity=0.017 Sum_probs=43.3
Q ss_pred cCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 277 QLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 277 ~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.....+|||+||+..+++.++.++|+.|| .|+.|.++.+..++.+++||||+|..
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G---~i~~v~i~~~~~~~~~~g~afV~f~~ 63 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFG---DITDIQIPLDYETEKHRGFAFVEFEL 63 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTS---CCCCEECCCCSSSCCCSSEEEECCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccC---CEEEEEEEecCCCCCcceEEEEEECC
Confidence 34568899999999877777666655555 55667788888899999999999975
No 268
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.04 E-value=6.6e-06 Score=62.87 Aligned_cols=52 Identities=12% Similarity=-0.048 Sum_probs=43.0
Q ss_pred CceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 280 NTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 280 ~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
..+|||+||+..+++.++.++|+.| |.|..+.++.+..++.++++|||+|..
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~ 57 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGC---GSVNRVTILCDKFSGHPKGFAYIEFSD 57 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGG---CCEEEEEEEESCSSSSCCEEEEEEESS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC---CCEEEEEEEecCCCCCcceEEEEEECC
Confidence 4689999999998777766666655 467788899888899999999999975
No 269
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=98.04 E-value=4.4e-06 Score=65.46 Aligned_cols=55 Identities=11% Similarity=0.051 Sum_probs=43.8
Q ss_pred cCCCceeeeCCCCCccccchHHHHHHhcCCcceEEE--------EEEeeeCCCCCCcceeeeeecc
Q psy4080 277 QLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVG--------VGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 277 ~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~--------v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.....+|||+||+..+++.++.++|+.|| .|.. +.++.+..++.++|||||+|..
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G---~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~ 72 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIG---IIKTNKKTGQPMINLYTDRETGKLKGEATVSFDD 72 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTS---CBCEETTTTEESEEEEECTTTCSEEEEEEEEBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhC---CEeeccccccccEEEEecCCCCCeeeEEEEEECC
Confidence 34568899999999887777666666555 5555 7888888899999999999975
No 270
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.04 E-value=3e-06 Score=67.12 Aligned_cols=53 Identities=8% Similarity=-0.046 Sum_probs=40.8
Q ss_pred cCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 277 QLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 277 ~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.....+|||+||+..+++.+++ ++|..++ ++.|.++++. ++.++|||||+|..
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~---~~F~~~G-~~~v~i~~d~-~g~~~G~afV~F~~ 64 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIY---NFFSPLN-PMRVHIEIGP-DGRVTGEADVEFAT 64 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHH---HSSCSCC-CSEEEEEESS-SSCEEEEEEEECSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHH---HHHHHcC-ceEEEEEECC-CCCEeeEEEEEECC
Confidence 3456789999999887766654 5555555 3378889886 89999999999975
No 271
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=98.04 E-value=3.8e-06 Score=76.64 Aligned_cols=55 Identities=5% Similarity=-0.046 Sum_probs=44.6
Q ss_pred CCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 279 NNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 279 ~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
...+|||+||+..+++.+|+++|+.||.+ .|+.|.|+++..++.++|||||+|..
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~-~v~~v~i~~d~~tg~skGfaFV~f~~ 121 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVN-DILEIKFFENRANGQSKGFALVGVGS 121 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCC-CEEEEEEEECTTTCCEEEEEEEEESC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCc-ceEEEEEEecCCCCccceEEEEEECC
Confidence 45789999999998888877777766621 67788899998999999999999964
No 272
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.03 E-value=6.7e-06 Score=64.90 Aligned_cols=53 Identities=11% Similarity=-0.029 Sum_probs=43.8
Q ss_pred CCCceeeeCCCCCccccchHHHHHHh-cCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEV-FGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~-Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....+|||+||+..+++.++.++|+. || .|..|.++.+. ++.+++||||+|..
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G---~v~~v~i~~~~-~g~~~g~afV~f~~ 60 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYP---SCRGGKVVLDQ-TGVSKGYGFVKFTD 60 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCT---TEEEEEEEECT-TCCEEEEEEEEESC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCC---CeEEEEEEECC-CCCccceEEEEECC
Confidence 45678999999999888887777776 66 45677888887 88899999999975
No 273
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=98.03 E-value=3.8e-06 Score=67.17 Aligned_cols=55 Identities=4% Similarity=-0.112 Sum_probs=44.6
Q ss_pred cCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 277 QLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 277 ~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.....+|||+||+..+++.++.++|+.| |.|..|.++.+..++.++|||||+|..
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~ 77 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDY---GEIKNIHLNLDRRTGFSKGYALVEYET 77 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGG---SCEEEEECCBCTTTSSBCSEEEEEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEecCCCCCcceEEEEEECC
Confidence 3456789999999987777766666555 567788899888899999999999974
No 274
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=98.03 E-value=2.6e-06 Score=67.14 Aligned_cols=54 Identities=11% Similarity=0.054 Sum_probs=42.9
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeeccc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSGG 335 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~a 335 (403)
....+|||+||+..+++.++.++|+.| |.|..|.++.+. ++.++|||||+|...
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~~-~g~~~g~afV~f~~~ 60 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARY---GSVKEVKIITDR-TGVSKGYGFVSFYND 60 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGG---SCEEEEEEEECT-TSCEEEEEEEEESSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC---CCeEEEEEEECC-CCCccceEEEEECCH
Confidence 345789999999987777766666555 567788899886 888999999999753
No 275
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=98.03 E-value=7.3e-06 Score=64.80 Aligned_cols=53 Identities=8% Similarity=0.005 Sum_probs=41.6
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....+|||+||+..+++.++.++|+ .+|.|+.|.++.+. ++.+++||||+|..
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~---~~G~i~~v~i~~~~-~g~~~g~afV~f~~ 65 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQ---PFGVIDECTVLRGP-DGSSKGCAFVKFSS 65 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHT---TTSCEEEEEEEECS-SSCEEEEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH---hcCCeEEEEEEECC-CCCcCcEEEEEeCC
Confidence 3468899999998877766555554 55567888888876 78889999999975
No 276
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=98.03 E-value=9e-06 Score=65.86 Aligned_cols=53 Identities=13% Similarity=0.026 Sum_probs=43.1
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....+|||+||+..+++.++.++|+.||. |+.|.++.+. ++.++|||||+|..
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~---i~~v~i~~~~-~g~~~g~afV~F~~ 57 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGP---ISEVLLIKDR-TSKSRGFAFITFEN 57 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSC---CSEEEEECST-TTTCCCEEEEECSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC---EEEEEEEECC-CCCcccEEEEEECC
Confidence 44678999999999888887777777765 4566778776 88999999999975
No 277
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.03 E-value=4.6e-06 Score=68.79 Aligned_cols=52 Identities=19% Similarity=0.142 Sum_probs=41.0
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEE--EEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVV--GVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~--~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....+|||+||+..+++.+++++ |..+ .|+ .|.++++.+ +.++|||||+|+.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~---F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~ 93 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQF---FSGL-EIVPNGITLPVDPE-GKITGEAFVQFAS 93 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHH---TTTS-CEEEEEEECCCCSS-SSSCSEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHH---HhcC-CceeeEEEEEECCC-CCCceEEEEEECC
Confidence 44678999999998777765555 5555 466 889998877 8999999999975
No 278
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=98.03 E-value=3.6e-06 Score=62.21 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=42.6
Q ss_pred eeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 282 QSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 282 ~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
++||+|||..+++.++.++|+.||++. .+.++.+..++.++|+|||+|..
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~---~v~i~~~~~~~~~~g~afV~f~~ 50 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVE---SIELPMDNKTNKRRGFCFITFKE 50 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCS---EECCCCSCCCSSSCCCEEEECSS
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeE---EEEEEecCCCCCcCCEEEEEECC
Confidence 489999999999998888888887654 56788888889999999999975
No 279
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=98.02 E-value=3.5e-06 Score=65.62 Aligned_cols=52 Identities=10% Similarity=0.064 Sum_probs=42.8
Q ss_pred CceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 280 NTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 280 ~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
..+|||+||+..+++.++.++|+.| |.|..|.++.+..++.++|+|||+|..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~ 53 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNV---GPVINLKMMFDPQTGRSKGYAFIEFRD 53 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTT---SCEEEEECCBCTTTCCBCSEEEEEESS
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhc---CCEEEEEEEeCCCCCccceEEEEEECC
Confidence 4689999999988777766666655 567788899888889999999999975
No 280
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=98.02 E-value=5.4e-06 Score=65.20 Aligned_cols=54 Identities=13% Similarity=0.092 Sum_probs=41.9
Q ss_pred cCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeC-CCCCCcceeeeeecc
Q psy4080 277 QLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMT-EMSGNGRISPLQFSG 334 (403)
Q Consensus 277 ~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~-~~~~~~g~~fv~f~~ 334 (403)
.....+|||+||+..+++.+ |.+.|+.+| |..|.++.+. .++.++|||||+|..
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~---l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~ 70 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEES---IKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFED 70 (100)
T ss_dssp ----CEEEESCCSSCCSSSH---HHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHH---HHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECC
Confidence 34568999999999877777 555566667 8899999887 589999999999975
No 281
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.02 E-value=3.8e-06 Score=68.86 Aligned_cols=55 Identities=2% Similarity=-0.132 Sum_probs=44.5
Q ss_pred cCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 277 QLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 277 ~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.....+|||+||+..+++.++.++|+.| |.|+.|.++.+..++.+++||||+|..
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~ 73 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEY---GEIKNIHLNLDRRTGYLKGYTLVEYET 73 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTT---SCEEEEECCBCTTTSSBCSCEEEEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEecCCCCccceEEEEEECC
Confidence 3456789999999987777766666555 567788899888899999999999975
No 282
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.02 E-value=1e-05 Score=63.46 Aligned_cols=54 Identities=11% Similarity=0.021 Sum_probs=42.4
Q ss_pred cCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 277 QLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 277 ~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.....+|||+||+..+++.++.++| ..+|.|+.|.++.+. ++.+++||||+|..
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F---~~~G~i~~v~i~~~~-~g~~~g~afV~f~~ 67 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEIC---KAHGTVKDLRLVTNR-AGKPKGLAYVEYEN 67 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHH---TTTSCEEEEEEEECT-TSCEEEEEEEEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH---HhCCCeEEEEEEECC-CCCEEeEEEEEECC
Confidence 3456789999999987776655555 555567788888886 88899999999975
No 283
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.01 E-value=3.1e-06 Score=68.02 Aligned_cols=58 Identities=14% Similarity=0.054 Sum_probs=44.6
Q ss_pred cCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCC---CCcceeeeeecc
Q psy4080 277 QLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMS---GNGRISPLQFSG 334 (403)
Q Consensus 277 ~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~---~~~g~~fv~f~~ 334 (403)
.....+|||+||+..+++.++..+.+.|+.+|.|..|.++.+..++ .++|||||+|..
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~ 72 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIR 72 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESS
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECc
Confidence 3456789999999998887765333777778888888888876643 556999999975
No 284
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.01 E-value=4.3e-06 Score=67.55 Aligned_cols=54 Identities=13% Similarity=0.081 Sum_probs=43.2
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....+|||+||+..+++.++.++|..|| .|+.|.++.+..++.++|||||+|..
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G---~i~~v~i~~~~~~g~~~g~afV~f~~ 78 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWG---KLTDCVVMRDPASKRSRGFGFVTFSS 78 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSC---CCSEEEEECCTTTSSCCSEEEEECSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC---CEEEEEEEECCCCCCcCceEEEEeCC
Confidence 3458899999999887777666665555 55667788888889999999999975
No 285
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.01 E-value=5.5e-06 Score=65.33 Aligned_cols=53 Identities=9% Similarity=0.082 Sum_probs=42.4
Q ss_pred cCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 277 QLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 277 ~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.....+|||+||+..+++.+ |.+.|..+|.|+.|.++.+ ++..++||||+|..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~---l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~ 64 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDER---LRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSS 64 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHH---HHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESS
T ss_pred CCCCCEEEEeCCCCCCCHHH---HHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECC
Confidence 34568899999998866655 6666667777888888886 78899999999975
No 286
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=97.99 E-value=4.6e-06 Score=61.65 Aligned_cols=50 Identities=14% Similarity=0.111 Sum_probs=41.5
Q ss_pred eeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 282 QSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 282 ~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
+|||+|||..+++.++.++|+.||+ |..+.++.+..++.++|+|||+|..
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~---i~~v~i~~~~~~~~~~g~afV~f~~ 50 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGK---VDDAMLMFDKTTNRHRGFGFVTFES 50 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSC---CSEECCCBCSSSTTSCBEEEEECSC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCC---EEEEEEEecCCCCCcCcEEEEEECC
Confidence 4899999999888887777777765 5566788888889999999999975
No 287
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=97.99 E-value=4.1e-06 Score=64.56 Aligned_cols=49 Identities=14% Similarity=0.066 Sum_probs=36.8
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....++||+||+..+++.+++++|+.| |.|+.|.++++ ++|||||+|+.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~---G~i~~v~i~~~-----srGfaFV~F~~ 57 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQY---GEVVDVFIPKP-----FRAFAFVTFAD 57 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTT---SCEEEEECCSS-----CCSEEEEEESC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcc---CCEEEEEEeeC-----CCCEEEEEECC
Confidence 456789999999998877766665555 56667777753 78999999975
No 288
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=97.99 E-value=5.2e-06 Score=64.34 Aligned_cols=54 Identities=11% Similarity=-0.026 Sum_probs=42.7
Q ss_pred cCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 277 QLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 277 ~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.....+|||+||+..+++.++.++|+.|| .|+.|.++.+.. +.++++|||+|..
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G---~i~~v~i~~~~~-g~~~g~afV~f~~ 66 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAG---PLTKVTICKDRE-GKPKSFGFVCFKH 66 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGS---CEEEEEEEECTT-SCEEEEEEEEESS
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcC---CEEEEEEEECCC-CCCceEEEEEECC
Confidence 34557899999999988777666666655 667788888765 8889999999975
No 289
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=97.99 E-value=9.6e-06 Score=67.51 Aligned_cols=56 Identities=11% Similarity=-0.018 Sum_probs=45.1
Q ss_pred ccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 276 EQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 276 ~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
......+|||+||+..+++.++.++|+.| |.|+.|.++.+..++.++|||||+|..
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~ 114 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPF---GDITDIQIPLDYETEKHRGFAFVEFEL 114 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGG---SCEEEEECCCCTTTCCCCSEEEEEESC
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhc---CCEEEEEEeecCCCCCcCcEEEEEECC
Confidence 34456899999999987777766666555 567778899888899999999999975
No 290
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.98 E-value=1.4e-05 Score=64.12 Aligned_cols=54 Identities=7% Similarity=0.102 Sum_probs=43.6
Q ss_pred cCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 277 QLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 277 ~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.....+|||+||+..+++.+ |.+.|..+|.|..|.++.+. ++.+++||||+|..
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~---l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~ 75 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQE---LENMLKPFGQVISTRILRDS-SGTSRGVGFARMES 75 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHH---HHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESC
T ss_pred CCCCCEEEEeCCCCCCCHHH---HHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECC
Confidence 34568899999998866555 66666677788889999987 88899999999975
No 291
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.97 E-value=6.4e-06 Score=63.97 Aligned_cols=54 Identities=13% Similarity=0.066 Sum_probs=44.3
Q ss_pred CCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 279 NNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 279 ~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
...+|||+||+..+++.++.++|+.||.+..| +.++.+..++.+++||||+|..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~--~~i~~~~~~g~~~g~afV~f~~ 57 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQT--PKIMRDPDTGNSKGYAFINFAS 57 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSC--CEECCCTTTCSCCSEEEEEBSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEE--EEEEEcCCCCCcCeEEEEEECC
Confidence 45789999999998888888888877766544 1677887899999999999975
No 292
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=97.97 E-value=6.6e-06 Score=70.17 Aligned_cols=54 Identities=6% Similarity=-0.126 Sum_probs=44.3
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....+|||+||+..+++.++.++|+.|| .|+.|.++.+..++.+++||||+|..
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G---~i~~v~i~~~~~~~~~~g~afV~f~~ 90 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSG---DIKKIIMGLDKMKKTACGFCFVEYYS 90 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGS---CEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC---CeEEEEEEecCCCCccceEEEEEECC
Confidence 3457899999999887777666666555 57788899998899999999999975
No 293
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.97 E-value=2.9e-06 Score=68.50 Aligned_cols=53 Identities=9% Similarity=-0.024 Sum_probs=41.4
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceE-EEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATV-VGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v-~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....+|||+||+..+++.++.++|+.| +.| ..|.++.+. ++.++|||||+|..
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~---g~v~~~v~i~~d~-~g~~~G~afV~F~~ 66 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGI---PVDENAVHVLVDN-NGQGLGQALVQFKN 66 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTS---CCCSTTEEECCCT-TSSCSSCEEEECSS
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhC---CCcCCeEEEEECC-CCCcceEEEEEECC
Confidence 456789999999988777766665555 455 456788886 88999999999974
No 294
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.95 E-value=5.1e-06 Score=64.84 Aligned_cols=53 Identities=4% Similarity=-0.093 Sum_probs=41.8
Q ss_pred CCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCC---CCCCcceeeeeecc
Q psy4080 279 NNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTE---MSGNGRISPLQFSG 334 (403)
Q Consensus 279 ~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~---~~~~~g~~fv~f~~ 334 (403)
...+|||+||+..+++.++.++|+.|| .|..|.++.+.. ++.+++||||+|..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G---~i~~v~i~~~~~~~gt~~~~g~afV~f~~ 59 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVG---AIKSCTISKKKNKAGVLLSMGFGFVEYKK 59 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTS---CEEEEEEEEEECTTCCEEEEEEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC---CeEEEEEEecCCCCCCcCcccEEEEEECC
Confidence 457899999999988887777766665 566777887766 56889999999974
No 295
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.94 E-value=5.4e-06 Score=63.79 Aligned_cols=53 Identities=11% Similarity=-0.007 Sum_probs=42.1
Q ss_pred cCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 277 QLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 277 ~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.....+|||+||+..+++.++.++|+.| .|..|.++.+ .++.++|+|||+|..
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~----~i~~v~i~~~-~~g~~~g~afV~f~~ 59 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL----KPVAIRIVRN-AHGNKTGYIFVDFSN 59 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS----CCSEEEEEEC-TTSCEEEEEEEECSS
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC----CceEEEEEEC-CCCCCceEEEEEECC
Confidence 3456889999999988777766665555 5667788888 888999999999975
No 296
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.93 E-value=3.6e-06 Score=67.63 Aligned_cols=58 Identities=9% Similarity=-0.022 Sum_probs=43.7
Q ss_pred cCCCceeeeCCCCCccccchHHHHHHhcCCcceEE-----EEEEeeeCCCCCCcceeeeeecc
Q psy4080 277 QLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVV-----GVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 277 ~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~-----~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.....+|||+||+..+++.++.++|+.||.+..+. .|.++.+..++.+++||||+|..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~ 74 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYED 74 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSS
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECC
Confidence 44568999999998887777666666655443100 47788888899999999999975
No 297
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=97.92 E-value=7.7e-06 Score=62.30 Aligned_cols=53 Identities=8% Similarity=0.039 Sum_probs=42.2
Q ss_pred CCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCC-Ccceeeeeecc
Q psy4080 279 NNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSG-NGRISPLQFSG 334 (403)
Q Consensus 279 ~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~-~~g~~fv~f~~ 334 (403)
...+|||+||+..+++.++.++|+.| |.|..+.++.+..++. .+|+|||+|..
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~~~i~~~~~~~~~~~g~afV~f~~ 56 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTY---GKIKMIDMPVERMHPHLSKGYAYVEFEN 56 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTT---SCEEEEECCEETTEEEEECSEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhC---CCEEEEEEEeCCCCCCCCCcEEEEEEec
Confidence 35789999999988777766666555 5677888888877766 89999999975
No 298
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=97.92 E-value=9.5e-06 Score=66.27 Aligned_cols=53 Identities=6% Similarity=-0.031 Sum_probs=43.7
Q ss_pred CCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 279 NNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 279 ~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
...+|||+||+..+++.++.++|+.| |.|..|.++.+..++.++|||||+|..
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~ 87 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSC---GSINRITILCDKFSGHPKGYAYIEFAE 87 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTT---SCEEEEEEEEECTTSSCEEEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEecCCCCCcccEEEEEECC
Confidence 45789999999988877766666655 467778899888899999999999975
No 299
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=97.92 E-value=6.9e-06 Score=67.83 Aligned_cols=53 Identities=8% Similarity=-0.020 Sum_probs=40.0
Q ss_pred CCceeeeCCCCCccccchHHH-HHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 279 NNTQSELGSLLSEKHAIKGGK-FEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 279 ~~~~~~vg~l~~~~~~~~~~~-l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
...+|||+||+..+++.++++ |++.|+.||.|+.|.+. .++.++|||||+|..
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~---~~~~~rG~aFV~F~~ 81 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD---LSDDNSGKAYIVFAT 81 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC---CCCSSCCCEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec---cCCCcCCEEEEEECC
Confidence 457899999999998888763 55556666666666654 356789999999974
No 300
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=97.91 E-value=9.3e-06 Score=64.42 Aligned_cols=53 Identities=9% Similarity=-0.037 Sum_probs=42.9
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....+|||+||+..+++.++.++|+.|| .|+.|.++.+. ++.++++|||+|..
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G---~i~~v~i~~~~-~g~~~g~afV~f~~ 79 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFG---TLKKAAVHYDR-SGRSLGTADVHFER 79 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTS---CEEEEEEEECT-TSCEEEEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC---CeEEEEEEECC-CCCcceEEEEEECC
Confidence 4568899999999888777666666555 66778888886 88899999999974
No 301
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=97.91 E-value=9.7e-06 Score=60.99 Aligned_cols=52 Identities=6% Similarity=-0.002 Sum_probs=37.5
Q ss_pred ceeeeCCCCCcccc---chHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 281 TQSELGSLLSEKHA---IKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 281 ~~~~vg~l~~~~~~---~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.+|||+|||..+++ .+.++|.+.|+.+|.|..|.++ ..++.++|||||+|..
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~ 56 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYAS 56 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECC
Confidence 57999999987622 0334455555566667777777 4788999999999974
No 302
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.91 E-value=1.4e-05 Score=64.07 Aligned_cols=53 Identities=11% Similarity=-0.058 Sum_probs=41.1
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....+|||+||+..+++.+++++| ..+|.|+.|.++.+. ++.+++|+||+|..
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f---~~~G~i~~~~i~~~~-~g~~~g~afV~f~~ 65 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVF---SMAGVVVRADILEDK-DGKSRGIGTVTFEQ 65 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHH---TTTSCEEEEEEEECT-TCSEEEEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH---HhcCCeEEEEEEECC-CCCeeeEEEEEECC
Confidence 446789999999887766655555 555577788888875 58889999999975
No 303
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.90 E-value=6.1e-06 Score=67.28 Aligned_cols=48 Identities=6% Similarity=0.012 Sum_probs=37.1
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....+|||+||+..+++.+|+++|+.||++.. |.++++ +|||||+|+.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~---v~i~~~------kG~AFVeF~~ 76 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTN---LLMLKG------KNQAFIEMNT 76 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCE---EEEEGG------GTEEEEECSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE---EEEeCC------CCEEEEEECC
Confidence 34578999999999888887777777776554 455543 7999999975
No 304
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=97.88 E-value=1.8e-05 Score=60.89 Aligned_cols=52 Identities=12% Similarity=-0.089 Sum_probs=40.6
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....+|||+||+..+++.+++++|+.|| .|..|.++. +++.++++|||+|..
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G---~v~~~~i~~--~~g~~~g~afV~f~~ 57 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECG---HVLYADIKM--ENGKSKGCGVVKFES 57 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTS---CEEEEEEEE--SSSCEEEEEEEEESS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC---CEEEEEEEc--cCCCcceEEEEEECC
Confidence 4567899999999888877777766665 555666665 577889999999975
No 305
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.88 E-value=7.5e-06 Score=65.23 Aligned_cols=54 Identities=13% Similarity=0.049 Sum_probs=43.7
Q ss_pred CCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEe-eeCCCCCCcceeeeeecc
Q psy4080 279 NNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAV-TMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 279 ~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~-~~~~~~~~~g~~fv~f~~ 334 (403)
...+|||+||+..+++.++.++|..||. .|+.|.++ .+..++.++|||||+|..
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~--~v~~v~i~~~~~~~g~~~g~afV~f~~ 61 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTE--GVLDVIVYASAADKMKNRGFAFVEYES 61 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHST--TEEEEECCSSSCTTTTTCCEEEEEESS
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcC--CceEEEEEccCCCCCCcCcEEEEEecC
Confidence 4678999999999888888877777764 15566777 677788999999999975
No 306
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=97.88 E-value=5.3e-06 Score=63.68 Aligned_cols=51 Identities=12% Similarity=0.122 Sum_probs=42.8
Q ss_pred ceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 281 TQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 281 ~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.+|||+||+..+++.++.++|+.||++. .+.++.+..++.++|+|||+|..
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~---~v~i~~~~~~~~~~g~afV~f~~ 52 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVF---NVKLIYDRETKKPKGFGFVEMQE 52 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCS---EEEECCCSSSCCCCEEEEEEECT
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEE---EEEEEEcCCCCCcceEEEEEECC
Confidence 4699999999988888888888777554 56788888889999999999975
No 307
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.87 E-value=1.1e-05 Score=63.48 Aligned_cols=53 Identities=13% Similarity=0.024 Sum_probs=43.5
Q ss_pred CCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 279 NNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 279 ~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
...+|||+||+..+++.++.++|+.||. |..|.++.+..++.++|||||+|..
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~---i~~~~i~~~~~~g~~~g~afV~f~~ 59 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGP---VVSFRLVYDRETGKPKGYGFCEYQD 59 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSC---CSEEEEEEETTTTEEEEEEEEECSC
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCC---eeEEEEEeCCCCCccceEEEEEECC
Confidence 3478999999999888887777777665 5566788888899999999999974
No 308
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.87 E-value=1.3e-05 Score=63.17 Aligned_cols=53 Identities=6% Similarity=0.042 Sum_probs=39.8
Q ss_pred cCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 277 QLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 277 ~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.....+|||+||+..+++.++.++|+. +|.|..|.++.+.. .+++||||+|..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~---~G~v~~v~i~~~~~--~~~g~afV~f~~ 64 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQ---FGKILDVEIIFNER--GSKGFGFVTFEN 64 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGG---TSCEEEEEEECCTT--TTCCEEEEEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh---cCCeEEEEEEecCC--CCcEEEEEEECC
Confidence 445689999999998777775555555 55677778887643 389999999975
No 309
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.85 E-value=6.9e-06 Score=66.24 Aligned_cols=52 Identities=17% Similarity=0.059 Sum_probs=39.6
Q ss_pred CCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCC---CCCcceeeeeecc
Q psy4080 279 NNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEM---SGNGRISPLQFSG 334 (403)
Q Consensus 279 ~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~---~~~~g~~fv~f~~ 334 (403)
...+|||+||+..+++.+++++|+.|| .|. +.++.+..+ +.++|||||+|..
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G---~i~-~~~~~~~~~~~~g~~~G~aFV~f~~ 61 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFG---PLV-VDWPHKAESKSYFPPKGYAFLLFQE 61 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTC---CCC-EECTTSSSSCCCSCTTSEEEECCSS
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcC---CEE-EEEeecCCCCCCCCcccEEEEEECC
Confidence 457899999999877777666555555 555 667777666 6899999999975
No 310
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=97.85 E-value=1.2e-05 Score=63.45 Aligned_cols=47 Identities=15% Similarity=0.127 Sum_probs=36.6
Q ss_pred CCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 279 NNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 279 ~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....|||+||+..+++.++.++|+.||++ +.|.+++ .+|+|||+|+.
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V---~~v~i~~------~kg~AFVef~~ 66 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPI---SYVVVMP------KKRQALVEFED 66 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCE---EEEEEET------TTTEEEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCE---EEEEEEc------CCCEEEEEECC
Confidence 45789999999998888888777777654 4555553 47899999974
No 311
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=97.84 E-value=1.5e-05 Score=70.71 Aligned_cols=95 Identities=11% Similarity=0.046 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHh--CCceeCCeEEEEEeccCCCCCCCCCCcCCCCCCcccCCCceeeeCCCCCccccchHHHHHHhcCCc
Q psy4080 230 SRDDAAAAKDAC--TGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEKHAIKGGKFEEVFGEI 307 (403)
Q Consensus 230 ~~~~a~~Al~~l--~g~~l~g~~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~ 307 (403)
+.+.+..|+... ....+.+....|......+ .+.. ...........+|||+|||..+++.+++ +.|+.+
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p----~p~~--~~~~~~~~~~~~l~V~nLp~~~t~~~L~---~~F~~~ 133 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKP----LPEV--TDEYKNDVKNRSVYIKGFPTDATLDDIK---EWLEDK 133 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSC----CCCC--CHHHHHHHHHTEEEEECCCTTCCHHHHH---HHHTTS
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCC----Cccc--chhhhhccccCEEEecCCCCcCCHHHHH---HHHhcC
Confidence 567788888776 4556666656665442111 1100 0000122345789999999887666655 455555
Q ss_pred ceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 308 ATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 308 g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
|.|..|.++++. ++.++|||||+|+.
T Consensus 134 G~v~~v~i~~~~-~~~~kG~aFVeF~~ 159 (193)
T 2voo_A 134 GQVLNIQMRRTL-HKAFKGSIFVVFDS 159 (193)
T ss_dssp CCEEEEEEEECT-TCCEEEEEEEEESS
T ss_pred CCEEEEEEEECC-CCCcccEEEEEECC
Confidence 677788888874 48889999999975
No 312
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.84 E-value=2.8e-05 Score=61.20 Aligned_cols=53 Identities=11% Similarity=0.041 Sum_probs=41.2
Q ss_pred cCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 277 QLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 277 ~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.....+|||+||+..+++.++.++|+.|| .|+.|.++.+..+ .++||||+|..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G---~i~~v~i~~~~~~--~~g~afV~f~~ 64 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIG---PCKSCKMITEHTS--NDPYCFVEFYE 64 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHS---CEEEEEEECCCCS--SCCEEEEEESS
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcC---CEeEEEEEecCCC--CCCEEEEEECC
Confidence 34568999999999988888777777776 5666777776433 68999999974
No 313
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.83 E-value=6.9e-06 Score=65.92 Aligned_cols=50 Identities=10% Similarity=-0.022 Sum_probs=39.9
Q ss_pred CceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 280 NTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 280 ~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
..+|||+||+..+++.+++++|+.| .|+.|.|+.+.+ +.++|||||+|..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~----~v~~v~i~~d~~-g~~~G~afV~F~~ 65 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL----RVDAVHLLKDHV-GRNNGNGLVKFLS 65 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS----CCCEEEECCCTT-CCCCSEEEEECSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC----CeeEEEEEECCC-CCCCeEEEEEECC
Confidence 4689999999987777766655555 467788888865 8899999999975
No 314
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.83 E-value=6.7e-06 Score=64.16 Aligned_cols=54 Identities=11% Similarity=-0.042 Sum_probs=42.3
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....+|||+||+..+++.+++++|..||.+. .+.++.+..++.+++||||+|..
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~---~~~~~~~~~~g~~~g~afV~f~~ 66 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIP---GSVCLKYNEKGMPTGEAMVAFES 66 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCT---TTCEEEECSSSCEEEEEEEEESC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCcc---ceEEEEECCCCCeeeEEEEEECC
Confidence 4457899999999988887776666666554 45567777889999999999975
No 315
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.82 E-value=5.9e-06 Score=67.69 Aligned_cols=54 Identities=11% Similarity=-0.090 Sum_probs=40.4
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....+|||+||+..+++.++.++|..|| .|..+.++.+..++.++|||||+|..
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G---~v~~~~~~~~~~~g~~~G~afV~F~~ 76 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLD---IVEDSIYIAYGPNGKATGEGFVEFRN 76 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSC---BCTTTCEEEECTTSSEEEEEEEEBSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC---CccceEEEEECCCCCCCeEEEEEECC
Confidence 4557899999999877777665555555 44444456667889999999999975
No 316
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.80 E-value=2.5e-05 Score=61.73 Aligned_cols=48 Identities=8% Similarity=-0.071 Sum_probs=35.0
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....+|||+||+..+++.+|.++ |..||.|+.|.++++ +|||||+|+.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~---F~~fG~v~~v~i~~~------kg~aFVef~~ 60 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIAL---GLPFGKVTNILMLKG------KNQAFLELAT 60 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHT---TTTTSCEEEEEEETT------TTEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHH---HHhcCCEEEEEEECC------CCEEEEEECC
Confidence 34578999999988776665555 555556666666642 8999999975
No 317
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=97.80 E-value=4.5e-06 Score=64.73 Aligned_cols=53 Identities=9% Similarity=-0.045 Sum_probs=41.0
Q ss_pred CCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 279 NNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 279 ~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
...+|||+|||..+++.+++++|+.||. |..+.++.+..++.+++||||+|..
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~---i~~~~~~~~~~~g~~~g~afV~f~~ 66 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQV---IPGSVCLKYNEKGMPTGEAMVAFES 66 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCB---CTTCCEEEECTTSCEEEEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCC---ccceEEEEeCCCCCEeeEEEEEECC
Confidence 4578999999998777776666665554 4445677778889999999999975
No 318
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.80 E-value=1.6e-05 Score=61.92 Aligned_cols=50 Identities=12% Similarity=0.030 Sum_probs=40.0
Q ss_pred CCceeeeCCCCCccccchHH----HHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 279 NNTQSELGSLLSEKHAIKGG----KFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 279 ~~~~~~vg~l~~~~~~~~~~----~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
+..+|||+||+..+++.+++ ++|+.|| .|+.|.++++..+ ++||||+|..
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G---~v~~v~i~~~~~~---rg~afV~f~~ 61 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHG---KVKSVELSPHTDY---QLKAVVQMEN 61 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHS---CEEEEEECSCCST---TCCEEEEESS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccC---cEEEEEEEeCCCC---CeEEEEEECC
Confidence 45789999999998888887 6666655 6677888877655 8899999975
No 319
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.80 E-value=0.00026 Score=55.29 Aligned_cols=71 Identities=18% Similarity=0.195 Sum_probs=60.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcC-----CCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q psy4080 177 QPSRCLGVFGLSIYTTEQQINHIFSKY-----GPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQI 251 (403)
Q Consensus 177 ~~~~~l~V~nLp~~~te~~L~~~F~~~-----G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i 251 (403)
...++|.|.|||+.+.++.|.-+|+.- |+|..|+... +-|+|+|.+.+.|++.|+. ..+.|.+.+|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEE
Confidence 346899999999999999999999872 6888887754 2799999999999999953 5788999999
Q ss_pred EEEec
Q psy4080 252 RVDFS 256 (403)
Q Consensus 252 ~V~~a 256 (403)
.|...
T Consensus 77 sV~P~ 81 (104)
T 2dhx_A 77 SLRPA 81 (104)
T ss_dssp EEEEC
T ss_pred EEEcC
Confidence 99754
No 320
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=97.78 E-value=3.2e-05 Score=63.10 Aligned_cols=54 Identities=7% Similarity=-0.056 Sum_probs=43.5
Q ss_pred cCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 277 QLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 277 ~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.....+|||+||+..+++.++.++|+.||+ |+.|.++.+. ++.++|||||+|..
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~---v~~v~i~~~~-~g~~~g~afV~f~~ 85 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGT---LKKAAVDYDR-SGRSLGTADVHFER 85 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSC---CSEEEEECCS-SSSCCSEEEEEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC---eeEEEEEECC-CCCEeeEEEEEECC
Confidence 345678999999999888887777777665 4566788876 88899999999975
No 321
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.78 E-value=1.1e-05 Score=61.70 Aligned_cols=48 Identities=10% Similarity=0.006 Sum_probs=35.5
Q ss_pred CCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 279 NNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 279 ~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
...+|||+||+..+++.++.++|+. +|.|..|.++++ ++|||||+|..
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~---~G~i~~v~i~~~-----~~g~afV~f~~ 51 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQ---YGDVMDVFIPKP-----FRAFAFVTFAD 51 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTT---TSCCCEEECCSS-----CCSCCEEECSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHH---cCCeeEEEEecC-----CCCEEEEEECC
Confidence 4578999999998777775555554 555666667643 78999999975
No 322
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.77 E-value=2.3e-05 Score=62.23 Aligned_cols=48 Identities=17% Similarity=0.069 Sum_probs=35.7
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....+|||+||+..+++.+|.++|+.|| .|+.|.+++ .++||||+|+.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG---~V~~v~i~~------~kg~aFVef~~ 60 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFG---TICYVMMMP------FKRQALVEFEN 60 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTS---CEEEEEEET------TTTEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCC---CEEEEEEEC------CCCEEEEEECC
Confidence 3457899999999888877766666665 555556654 27999999974
No 323
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.76 E-value=2.6e-05 Score=62.64 Aligned_cols=53 Identities=11% Similarity=-0.079 Sum_probs=42.0
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEE-EEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVV-GVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~-~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....+|||+||+..+++.++.++|..||.+..|. .+.+. ++.+++||||+|..
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~g~~~g~afV~f~~ 76 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM----TGRMRGQAFITFPN 76 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE----CSSSCSEEEEECSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC----CCccceEEEEEECC
Confidence 3457999999999999999888888888775542 33333 77889999999975
No 324
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=97.75 E-value=1.9e-05 Score=63.03 Aligned_cols=45 Identities=16% Similarity=0.181 Sum_probs=37.4
Q ss_pred CCceeeeCCCCCc-cccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 279 NNTQSELGSLLSE-KHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 279 ~~~~~~vg~l~~~-~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
...+|||+||+.. +++.++.++|+.||++..|. + .++||||+|..
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~---i--------~~g~afV~f~~ 71 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCS---V--------HKGYAFVQYSN 71 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEE---E--------ETTEEEEECSS
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEE---E--------eCCEEEEEECC
Confidence 3478999999999 99999888888888777654 3 57999999975
No 325
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.73 E-value=2.8e-05 Score=61.89 Aligned_cols=52 Identities=12% Similarity=0.150 Sum_probs=38.9
Q ss_pred cCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 277 QLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 277 ~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.....+|||+||+..+++.++.++|+.|| .|+.|.++. +..+++||||+|..
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G---~v~~~~i~~---~~~~~g~afV~f~~ 70 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYG---AIRDIDLKN---RRGGPPFAFVEFED 70 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGS---CEEEEEECC---SSSSSCCEEEEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC---CeEEEEEEE---CCCCCcEEEEEECC
Confidence 34568999999999888877776666665 555666654 34578999999975
No 326
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.72 E-value=2.8e-05 Score=62.62 Aligned_cols=48 Identities=13% Similarity=0.014 Sum_probs=36.1
Q ss_pred CCCceeeeCCCCCc-cccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSE-KHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~-~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....+|||+||+.. +++.+|+++|+.||++.. |.+++ .++||||+|+.
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~---v~i~~------~kg~aFVef~~ 71 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKN---YILMR------MKSQAFIEMET 71 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSE---EEEET------TTTEEEEECSS
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEE---EEEec------CCCEEEEEECC
Confidence 34678999999997 888887777666666554 44542 47999999975
No 327
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=96.90 E-value=4.7e-06 Score=67.37 Aligned_cols=58 Identities=14% Similarity=0.012 Sum_probs=44.1
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEE-----EEEEeeeCCCCCCcceeeeeeccc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVV-----GVGAVTMTEMSGNGRISPLQFSGG 335 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~-----~v~~~~~~~~~~~~g~~fv~f~~a 335 (403)
....+|||+||+..+++.++.++|+.||.+..+. .|.++.+..++.+++||||+|...
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~ 67 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDP 67 (116)
Confidence 3457899999999988888777766666543311 177888888899999999999754
No 328
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.70 E-value=1.4e-05 Score=63.96 Aligned_cols=54 Identities=11% Similarity=0.113 Sum_probs=40.7
Q ss_pred ccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 276 EQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 276 ~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
......+|||+||+..+++.++.++|+.||++. .|.++.+. +.++|||||+|..
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~---~v~i~~~~--~~~kg~afV~f~~ 78 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKIL---DVEIIFNE--RGSKGFGFVTFEN 78 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCS---CEEECCBT--TBCTTEEEEECCC
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEE---EEEEEECC--CCCceEEEEEECC
Confidence 344568899999999988888777777666554 55677653 3489999999975
No 329
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=97.70 E-value=6.8e-06 Score=64.54 Aligned_cols=53 Identities=13% Similarity=-0.004 Sum_probs=43.7
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....+|||+||+..+++.++.++|+.||.+.. .++.+..++.++|||||+|..
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~----~~~~~~~~g~~~g~afV~f~~ 67 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND----LAVVDVRTGTNRKFGYVDFES 67 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT----CCCCEEEEETTTTEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce----EEEecCCCCCcCcEEEEEECC
Confidence 34678999999999999999999888887655 345566778899999999975
No 330
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=97.68 E-value=4e-05 Score=61.14 Aligned_cols=48 Identities=15% Similarity=0.180 Sum_probs=36.1
Q ss_pred ccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 276 EQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 276 ~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
......+|||+||+..+++.++.++|+.||.+..| .++ +|||||+|..
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v---~i~--------kg~afV~f~~ 74 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEV---KIL--------NGFAFVEFEE 74 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEE---EEE--------TTEEEEECSS
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEE---EEE--------CCEEEEEECC
Confidence 34566899999999998888877777766665544 444 7899999974
No 331
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.67 E-value=2.3e-05 Score=62.01 Aligned_cols=47 Identities=4% Similarity=-0.043 Sum_probs=34.8
Q ss_pred CCceeeeCCCCC-ccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 279 NNTQSELGSLLS-EKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 279 ~~~~~~vg~l~~-~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
...+|||+||+. .+++.+|.++|+.| |.|+.|.++++ ++||||+|+.
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~f---G~V~~v~i~~~------kg~aFVef~~ 61 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPF---GVISNHLILNK------INEAFIEMAT 61 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGG---SCEEEEEECSS------SSCEEEEESS
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhc---CCEEEEEEEcC------CCEEEEEECC
Confidence 457899999998 87777766555555 55666667653 4799999975
No 332
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.65 E-value=5.5e-05 Score=60.18 Aligned_cols=47 Identities=9% Similarity=-0.041 Sum_probs=37.0
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....+|||+||+..+++.+|+++|..|| .|+.|.++++ +||||+|..
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G---~i~~~~i~~~-------g~afV~f~~ 59 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAG---DVCYADVYRD-------GTGVVEFVR 59 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGS---CEEEEEEETT-------TEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC---CEeEEEEecC-------CEEEEEECC
Confidence 3467899999999988888777776665 5667777754 899999975
No 333
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.65 E-value=2.3e-05 Score=61.40 Aligned_cols=51 Identities=12% Similarity=0.113 Sum_probs=38.1
Q ss_pred cCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 277 QLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 277 ~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.....+|||+||+..+++.+ |.++|.+|+.| .++.+ .++..++||||+|..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~---l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~ 62 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEET---LQEVFEKATFI---KVPQN-QNGKSKGYAFIEFAS 62 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHH---HHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSS
T ss_pred CCCCCEEEEeCCCCCCCHHH---HHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECC
Confidence 34568999999998866666 45555556665 45655 678899999999974
No 334
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=97.64 E-value=2.3e-05 Score=60.00 Aligned_cols=46 Identities=11% Similarity=0.058 Sum_probs=37.2
Q ss_pred CceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 280 NTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 280 ~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
..-|+|+||+..+++.++.+||..||++.+ +.++. ++|||||+|..
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~---~~l~~------~kGfaFVey~~ 52 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVS---FHPYL------NQGIALCKYTT 52 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEE---EEEET------TTTEEEEEESS
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEE---EEEcC------CCcEEEEEECC
Confidence 456999999999999998888888876655 44542 79999999975
No 335
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.64 E-value=4.9e-05 Score=57.41 Aligned_cols=49 Identities=18% Similarity=0.137 Sum_probs=37.4
Q ss_pred cCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 277 QLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 277 ~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.....+|||+||+..+++.++.++|+.||. |..|.++. .+++|||+|..
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~---i~~~~~~~------~kg~afV~f~~ 57 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGE---IRTITVVQ------RQQCAFIQFAT 57 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSC---EEEEEEEG------GGTEEEEEESS
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCC---EeEEEEEC------CCCEEEEEECC
Confidence 345678999999999888887777776664 55666664 37899999975
No 336
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=97.64 E-value=1.4e-05 Score=62.12 Aligned_cols=54 Identities=7% Similarity=0.023 Sum_probs=40.1
Q ss_pred CCCceeeeCCCCCccccchHH-HHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGG-KFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~-~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....+|||+||+..+++.++. .|++.|+.+|.|..|.++ .++.++|+|||+|..
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~---~~~~~~g~afV~f~~ 60 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVS---RSLKMRGQAFVIFKE 60 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECC---HHHHHTTCEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEE---cCCCcCcEEEEEeCC
Confidence 346789999999998888877 333555555666666666 346678999999974
No 337
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.63 E-value=5.4e-05 Score=57.98 Aligned_cols=46 Identities=13% Similarity=0.143 Sum_probs=35.7
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....+|||+||+..+++.++.++|+.||+ |..|.++ +++|||+|..
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~---i~~v~~~--------~g~afV~f~~ 51 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGK---VLECDII--------KNYGFVHIED 51 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSC---EEEEEEE--------TTEEEEEESS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCC---EEEEEEE--------CCEEEEEECC
Confidence 45688999999999888887777777765 5555555 6899999974
No 338
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=97.62 E-value=6e-05 Score=65.82 Aligned_cols=53 Identities=8% Similarity=-0.042 Sum_probs=43.8
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....+|||+||+..+++.+++++|+.||+| +.|.++.+. ++.+++||||+|..
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I---~~v~i~~d~-~g~~kG~afV~F~~ 138 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTL---KKAAVDYDR-SGRSLGTADVHFER 138 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCC---SEEEECCCT-TSSCSCCEEEEESC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCe---EEEEEEECC-CCCEeeEEEEEeCC
Confidence 345789999999999999888888887765 466678776 88899999999974
No 339
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=97.61 E-value=6.3e-05 Score=58.88 Aligned_cols=47 Identities=11% Similarity=0.024 Sum_probs=37.8
Q ss_pred CCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 279 NNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 279 ~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
...+|||+||+..+++.++.++|+.||.+..|. ++ ..++||||+|..
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~---~~------~~~g~afV~f~~ 72 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFK---HY------PEKGCCFIKYDT 72 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEE---EE------TTTTEEEEECSS
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEE---Ee------cCCCEEEEEECC
Confidence 357899999999999988888888887766554 43 468999999975
No 340
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.61 E-value=4.3e-05 Score=59.94 Aligned_cols=52 Identities=13% Similarity=0.114 Sum_probs=39.8
Q ss_pred cCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 277 QLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 277 ~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.....+|||+||+..+++.+ |.+.|..++ .|.++.+..++.+++||||+|..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~---l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~ 63 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEET---LKESFDGSV---RARIVTDRETGSSKGFGFVDFNS 63 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHH---HHHTSTTCS---EEEEEECSSSCSEEEEEEEECSS
T ss_pred CCCCCEEEEeCCCCccCHHH---HHHHhcCCe---EEEEEecCCCCCcCcEEEEEECC
Confidence 34568899999998876666 555555554 46677787889999999999974
No 341
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.60 E-value=4.6e-05 Score=58.64 Aligned_cols=48 Identities=10% Similarity=0.072 Sum_probs=36.9
Q ss_pred ccCCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 276 EQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 276 ~~~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
......+|||+||+..+++.+++++|+.||.+..| .++ +++|||+|..
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v---~~~--------~~~afV~f~~ 53 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIEC---DIV--------KDYAFVHMER 53 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEE---EEC--------SSEEEEEESC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE---EEE--------CCEEEEEECC
Confidence 34556889999999999888888888887766544 454 3399999975
No 342
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.59 E-value=9.9e-05 Score=57.54 Aligned_cols=48 Identities=13% Similarity=-0.031 Sum_probs=38.4
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....+|||+||+..+++.++.++|+.||. +.|..|.++ ++||||+|..
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~-g~v~~~~~~--------~g~afV~f~~ 60 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKP-GAVERVKKI--------RDYAFVHFSN 60 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTST-TCEEEEEEC--------SSEEEEEESS
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCC-cceEEEEEe--------CCeEEEEeCC
Confidence 34678999999999999998888888854 666666553 5799999975
No 343
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.56 E-value=0.00015 Score=56.86 Aligned_cols=74 Identities=18% Similarity=0.150 Sum_probs=62.5
Q ss_pred CCEEEEcCCCCCC-c----HHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy4080 179 SRCLGVFGLSIYT-T----EQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRV 253 (403)
Q Consensus 179 ~~~l~V~nLp~~~-t----e~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V 253 (403)
.++|+|.||+.++ + .+.++++|..|+++......+.-. =..|.|.++++|.+|-..|++..++|+.|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 5789999998865 2 257789999999988877665422 5689999999999999999999999999999
Q ss_pred EeccC
Q psy4080 254 DFSVT 258 (403)
Q Consensus 254 ~~a~~ 258 (403)
-++.+
T Consensus 79 YFgq~ 83 (104)
T 1wey_A 79 YFAQT 83 (104)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 99873
No 344
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.55 E-value=8.1e-05 Score=60.05 Aligned_cols=47 Identities=13% Similarity=-0.026 Sum_probs=36.9
Q ss_pred CCceeee--CCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 279 NNTQSEL--GSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 279 ~~~~~~v--g~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....||| |||+..+++.+|+++|+.||++.. |.++. .++||||+|+.
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~---v~i~~------~rgfaFV~f~~ 72 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDA---LLMPP------NKPYSFARYRT 72 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEE---EECCT------TCSCEEEEESS
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEE---EEEeC------CCCEEEEEECC
Confidence 4577999 889999999998988888886544 44442 37899999974
No 345
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.52 E-value=8.9e-05 Score=57.28 Aligned_cols=48 Identities=8% Similarity=0.096 Sum_probs=35.0
Q ss_pred CCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 279 NNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 279 ~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
...+|||+||+..+++.++.++|..||.+ ..| +.+..++. ||||+|..
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v---~~v--~~~~~~g~---~afV~f~~ 54 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPV---ASV--VMDKDKGV---FAIVEMGD 54 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCE---EEE--EECSSSCC---EEEEEESS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCe---EEE--EEcCCCCc---EEEEEECC
Confidence 45689999999998887777766666654 444 55555554 99999974
No 346
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=97.51 E-value=4.5e-05 Score=59.76 Aligned_cols=46 Identities=11% Similarity=0.045 Sum_probs=37.5
Q ss_pred ceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 281 TQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 281 ~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
++|||+||+..+++.++.++|+.||++. .|.++.+ ++++|||+|..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~---~v~i~~~-----~~g~afV~f~~ 46 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLR---TVWIARN-----PPGFAFVEFED 46 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCS---EEEEESS-----SSSEEEEECSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeE---EEEEeeC-----CCCEEEEEECC
Confidence 3699999999999999888888888665 4556654 78999999975
No 347
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=97.51 E-value=4.5e-05 Score=61.56 Aligned_cols=46 Identities=9% Similarity=-0.026 Sum_probs=35.9
Q ss_pred CCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 279 NNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 279 ~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
...+|||+||+..+++.+|+++|+.|| .|+.|.++++ +||||+|..
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G---~v~~~~i~~~-------g~afV~f~~ 60 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAG---DVCYADVYRD-------GTGVVEFVR 60 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGS---CEEEEEECTT-------SEEEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC---CeEEEEEecC-------CEEEEEECC
Confidence 457899999999999999888877776 4566667654 899999975
No 348
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=97.51 E-value=7.7e-05 Score=59.85 Aligned_cols=50 Identities=8% Similarity=-0.021 Sum_probs=37.6
Q ss_pred CCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 279 NNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 279 ~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
...+|||+||+..+++.++.++|..|| .|..|.++.+ +..+|+|||+|..
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G---~v~~v~i~~~---~~~~g~afV~f~~ 56 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYG---PIRQIRVGNT---PETRGTAYVVYED 56 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTS---CEEEEEEECS---TTTTTCEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC---CeEEEEEeeC---CCCCcEEEEEECC
Confidence 457899999999887777666666555 5667777754 3458999999964
No 349
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.49 E-value=8.5e-05 Score=57.94 Aligned_cols=48 Identities=13% Similarity=0.093 Sum_probs=35.2
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....+|||+||+..+++.++.++|+.||+ |..|.++. .++||||+|..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~---i~~v~~~~------~kg~afV~f~~ 60 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGK---AGEVFIHK------DKGFGFIRLET 60 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCC---CSEEEEET------TTTEEEEECSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCC---eEEEEEec------CCCEEEEEECC
Confidence 45578999999998777776666666555 44555653 37899999975
No 350
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=97.49 E-value=1.9e-05 Score=66.19 Aligned_cols=53 Identities=4% Similarity=-0.047 Sum_probs=42.9
Q ss_pred CCceeeeCCCCCccccchHHHHHHhcCCcceE-----EEEEEeeeCCCCCCcceeeeeecc
Q psy4080 279 NNTQSELGSLLSEKHAIKGGKFEEVFGEIATV-----VGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 279 ~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v-----~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
...+|||+||+..+++.++.++|..||.+..| ..+.+. .++.++|||||+|..
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~ 101 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPN 101 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCC
Confidence 45789999999999999999999999988764 223333 467889999999974
No 351
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=97.48 E-value=9.5e-05 Score=59.41 Aligned_cols=49 Identities=10% Similarity=-0.020 Sum_probs=39.1
Q ss_pred CCceeeeCCCCCccccchHHHHHHhcC-CcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 279 NNTQSELGSLLSEKHAIKGGKFEEVFG-EIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 279 ~~~~~~vg~l~~~~~~~~~~~l~~~Fg-~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
...+|||+||+..+++.+++++|+.|| ++..|. ++. ..++|||||+|..
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~---i~~----~~~rGfaFV~F~~ 76 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSS---VNT----RDFDGTGALEFPS 76 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEE---CSS----CSSSCCEEEEESS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEE---EEc----CCCCCEEEEEECC
Confidence 357899999999999999999999998 666543 432 2478999999974
No 352
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=97.47 E-value=0.0001 Score=58.03 Aligned_cols=46 Identities=13% Similarity=0.040 Sum_probs=36.1
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....+|||+||+..+++.++.++|+.||.+. .|.++ ++||||+|..
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~---~v~~~--------~~~afV~f~~ 54 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLE---RVKKL--------KDYAFIHFDE 54 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEE---EEEEC--------SSCEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE---EEEEE--------CCEEEEEeCC
Confidence 4567899999999999988888888877654 44454 4599999975
No 353
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.47 E-value=0.0001 Score=57.30 Aligned_cols=49 Identities=12% Similarity=0.131 Sum_probs=39.5
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....+|||+||+..+++.+++++|..||.+. + .+++ +.+++||||+|..
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~---~~~~----~~~~g~afV~f~~ 65 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-L---RLTW----QGPRRRAFLHYPD 65 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-S---EEEE----ETTTTEEEEECSS
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-E---EEEc----CCCCcEEEEEECC
Confidence 3457999999999999999999999998874 3 3443 3678999999975
No 354
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.47 E-value=0.00011 Score=58.42 Aligned_cols=48 Identities=17% Similarity=0.112 Sum_probs=38.3
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....+|||+||+..+++.++.++|+.||. |..|.++.+ ++||||+|..
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~---i~~v~i~~~------~g~afV~f~~ 70 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQ---IMEIRVFPE------KGYSFVRFST 70 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSC---EEEEEEETT------TTEEEEEESS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCC---eEEEEEeCC------CCEEEEEECC
Confidence 45678999999999888888888887774 556666653 7899999975
No 355
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.44 E-value=7.6e-05 Score=57.11 Aligned_cols=46 Identities=13% Similarity=0.046 Sum_probs=36.0
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....+|||+||+..+++.++.++|+.||. |..|.++ +++|||+|..
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~---v~~~~~~--------~~~afV~f~~ 52 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGR---VIECDVV--------KDYAFVHMEK 52 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSC---EEEEEEC--------SSCEEEEESC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCC---EEEEEEE--------CCEEEEEECC
Confidence 45678999999999988888888888776 4555555 3399999975
No 356
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.42 E-value=0.00022 Score=55.30 Aligned_cols=48 Identities=15% Similarity=0.146 Sum_probs=36.1
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....+|||+||+..+++.++.++|+.|| .|+.|.+++. +++|||+|..
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G---~v~~v~~~~~------~g~afV~f~~ 62 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFG---SIRTIDHVKG------DSFAYIQYES 62 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTS---CEEEEEECSS------SCCEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC---CeeEEEEeCC------CCEEEEEECC
Confidence 3457899999999988888777776666 4555666542 7899999974
No 357
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.42 E-value=0.0015 Score=50.23 Aligned_cols=68 Identities=12% Similarity=0.111 Sum_probs=56.3
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCC--cceEEEEEecCHHHHHHHHHHhCCceeC
Q psy4080 180 RCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGR--SRGFCFVYFESRDDAAAAKDACTGMEID 247 (403)
Q Consensus 180 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~--~rG~afV~f~~~~~a~~Al~~l~g~~l~ 247 (403)
++|.|.+||+.+||+++.+.+..+..+.....+..+.+.. .-.-|||.|.+.+++....+.++|..+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 5799999999999999999999998877666655443322 3357999999999999999999999863
No 358
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=97.41 E-value=0.00014 Score=56.63 Aligned_cols=46 Identities=11% Similarity=0.138 Sum_probs=34.9
Q ss_pred CCCceeeeCCCCC-ccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLS-EKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~-~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....+|||+||+. .+++.++.++|+.||. |..|.+ .+|||||+|..
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~---v~~v~i--------~~g~afV~f~~ 66 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGH---IMQINI--------KNAFGFIQFDN 66 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSC---EEEEEE--------CSSEEEEEESS
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCC---EEEEEE--------eCCEEEEEECC
Confidence 4568899999997 8888887777776665 555555 27899999975
No 359
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.40 E-value=5.5e-05 Score=60.64 Aligned_cols=47 Identities=17% Similarity=0.037 Sum_probs=35.7
Q ss_pred CCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 279 NNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 279 ~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
...+|||+||+..+++.++.++|+.||. |+.|.++. .++||||+|..
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~---i~~v~i~~------~~g~afV~f~~ 55 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGS---LGRVLLPE------GGITAIVEFLE 55 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSC---EEEEECCS------SSSCEEEEESC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCC---EEEEEEeC------CCCEEEEEeCC
Confidence 3578999999999888887777776665 45555552 67899999974
No 360
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=97.40 E-value=0.00013 Score=56.52 Aligned_cols=46 Identities=13% Similarity=0.123 Sum_probs=34.6
Q ss_pred CCCceeeeCCCCC-ccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLS-EKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~-~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....+|||+||+. .+++.++.++|+.||.+..| .+. ++||||+|..
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v---~i~--------~g~afV~f~~ 54 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQI---NIK--------NAFGFIQFDN 54 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEE---EEE--------TTEEEEEESC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEE---EEe--------CCEEEEEECC
Confidence 4567899999997 88888877777776665544 442 7899999975
No 361
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=97.38 E-value=0.00011 Score=63.14 Aligned_cols=49 Identities=14% Similarity=0.098 Sum_probs=36.9
Q ss_pred CCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 279 NNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 279 ~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....|||+||+..+++.+|.++|+.||++..|. +++. ..++||||+|..
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~---i~~k----~~rgfAFVeF~d 93 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKII---TFTK----NNQFQALLQYAD 93 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEE---EEES----SSCEEEEEEESC
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEE---EEeC----CCCCEEEEEECC
Confidence 346789999999988888888888887665554 4432 257899999964
No 362
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=97.35 E-value=5.1e-05 Score=58.78 Aligned_cols=49 Identities=10% Similarity=-0.075 Sum_probs=36.0
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....+|||+||+..+++.++.++|+. +|.|..+ ..++.++|||||+|..
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~---~g~v~~~-----~~~~~~~g~afV~f~~ 62 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFED---ALEIRLV-----SQDGKSKGIAYIEFKS 62 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCS---EEEECCE-----EETTEEEEEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhh---CCcEEEe-----CCCCCcceEEEEEECC
Confidence 34578999999998777775555555 4555444 3667889999999975
No 363
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.34 E-value=0.00013 Score=56.19 Aligned_cols=47 Identities=11% Similarity=-0.077 Sum_probs=37.8
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCC-cceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGE-IATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~-~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....+|||+||+..+++.+++++|+.||. +..+.. ..++||||+|..
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~----------~~~g~afV~f~~ 53 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL----------LKSGYAFVDYPD 53 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE----------EETTEEEECCSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE----------cCCCEEEEEECC
Confidence 34578999999999999999999999998 444332 147899999975
No 364
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.29 E-value=0.0008 Score=51.89 Aligned_cols=58 Identities=19% Similarity=0.351 Sum_probs=47.9
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHh
Q psy4080 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241 (403)
Q Consensus 175 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l 241 (403)
.+...+.++| ++|+.+...||.++|+.||.| .|..+-| | -|||.|.+++.|..||..+
T Consensus 12 ~p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD--T-----sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 12 QPKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD--T-----SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET--T-----EEEEECSCHHHHHHHHHHH
T ss_pred CCCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC--C-----eEEEEecCHHHHHHHHHhc
Confidence 3444567777 999999999999999999954 5666655 2 8999999999999999765
No 365
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=97.28 E-value=0.00032 Score=55.60 Aligned_cols=56 Identities=11% Similarity=-0.016 Sum_probs=42.8
Q ss_pred CCceeeeCCCCC--ccccchHHHHHHhcCCcceEEEEEEeeeCCC-CCCcceeeeeecc
Q psy4080 279 NNTQSELGSLLS--EKHAIKGGKFEEVFGEIATVVGVGAVTMTEM-SGNGRISPLQFSG 334 (403)
Q Consensus 279 ~~~~~~vg~l~~--~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~-~~~~g~~fv~f~~ 334 (403)
....|++.||.. ...+...++|.+.|+++|.|+.|.++++..+ +.++|++||+|+.
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~ 65 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFER 65 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESS
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECC
Confidence 456788888863 2334567889999999999999999988654 5789999999975
No 366
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=97.24 E-value=0.00027 Score=53.40 Aligned_cols=50 Identities=14% Similarity=0.058 Sum_probs=39.2
Q ss_pred CCceeeeCCCCCccccchHHHHHHhc----CCc----ceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 279 NNTQSELGSLLSEKHAIKGGKFEEVF----GEI----ATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 279 ~~~~~~vg~l~~~~~~~~~~~l~~~F----g~~----g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
...+|||+||+..+++.++.++|+.| |.. ..|..+.+..+ ++||||+|..
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~ 62 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRS 62 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCC
Confidence 35789999999999999988888888 511 16777777643 7999999975
No 367
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=97.18 E-value=0.00028 Score=64.49 Aligned_cols=52 Identities=13% Similarity=0.153 Sum_probs=35.2
Q ss_pred cCCCceeeeCCCCCccc------cchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 277 QLNNTQSELGSLLSEKH------AIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 277 ~~~~~~~~vg~l~~~~~------~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.....+|||+||+..++ ..++++|.+.|++||.|..|.++. .+|||||+|..
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~ 188 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKY 188 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESS
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCC
Confidence 44578999999998762 123344555555555666666763 48999999974
No 368
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=97.17 E-value=0.0002 Score=54.60 Aligned_cols=46 Identities=7% Similarity=0.020 Sum_probs=34.2
Q ss_pred CCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 279 NNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 279 ~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
...+|||+|||..+++.+++++|+.| ++. .+.+. .++|||||+|..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~---~~~i~------~~~g~afV~f~~ 49 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLK---YCYVD------RNKRTAFVTLLN 49 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCC---CEEEE------GGGTEEEECCSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeE---EEEEe------CCCcEEEEEECC
Confidence 35789999999998877766666666 444 44443 578999999974
No 369
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=97.09 E-value=0.00037 Score=57.51 Aligned_cols=48 Identities=19% Similarity=0.140 Sum_probs=33.0
Q ss_pred CCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcce-eeeeecc
Q psy4080 279 NNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRI-SPLQFSG 334 (403)
Q Consensus 279 ~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~-~fv~f~~ 334 (403)
.-..|+|+||+..+++.+|.++|..|| .|..|.++.. .++| |||+|..
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG---~V~~V~i~~~-----~~gfqAFVef~~ 75 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFG---TVLKIITFTK-----NNQFQALLQYAD 75 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSS---CEEEEEEEEE-----TTEEEEEEEESC
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcC---CEEEEEEEcC-----CCCcEEEEEECC
Confidence 346788999998877777555555555 5555555543 2577 9999974
No 370
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.03 E-value=0.0012 Score=50.98 Aligned_cols=46 Identities=2% Similarity=0.026 Sum_probs=31.6
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....+|||+|+ .+++.+ |.++|..+|.|..|.+. ..++||||+|..
T Consensus 13 ~~~~~l~V~n~--~~t~~~---l~~~F~~~G~i~~v~i~------~~~g~afV~f~~ 58 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTL---LRGAFSPFGNIIDLSMD------PPRNCAFVTYEK 58 (97)
T ss_dssp CCCSEEEEECS--SCCHHH---HHHHHTTTSCEEEEEEE------TTTTEEEEEESS
T ss_pred CCCCEEEEcCC--CCCHHH---HHHHHhhCCCEEEEEec------CCCCEEEEEECC
Confidence 34578999995 445555 55555555566666663 578899999975
No 371
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.97 E-value=0.00063 Score=52.42 Aligned_cols=49 Identities=10% Similarity=0.024 Sum_probs=36.4
Q ss_pred CCceeeeCCCCCccccchHHHHHHhcCCcceEEEE-EEeeeCCCCCCcceeeeeecc
Q psy4080 279 NNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGV-GAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 279 ~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v-~~~~~~~~~~~~g~~fv~f~~ 334 (403)
...+|||+||+..+++.++.++|..||. |..| .++.+..++. |||+|..
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~---v~~~~~i~~~~~~~~----afV~f~~ 63 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGV---VESCEQVNTDSETAV----VNVTYSS 63 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSC---EEEEEEECCSSSSEE----EEEEESS
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCC---eEEEEEeecCCCCCE----EEEEECC
Confidence 4578999999999888888887777765 5566 3665544433 9999975
No 372
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.96 E-value=0.00057 Score=52.83 Aligned_cols=45 Identities=16% Similarity=0.181 Sum_probs=33.6
Q ss_pred CceeeeCCCCCccccchHH-HHHHhcCCc-ceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 280 NTQSELGSLLSEKHAIKGG-KFEEVFGEI-ATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 280 ~~~~~vg~l~~~~~~~~~~-~l~~~Fg~~-g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.+.+||+||+..+++.+++ .|.+.|+++ |.|..| + +|+|||.|..
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------t---gG~AfV~F~~ 55 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------T---GCSAILRFIN 55 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------C---TTCEEEEESS
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------e---cCEEEEEECC
Confidence 3449999999998887755 366777777 377765 1 2999999974
No 373
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.94 E-value=0.004 Score=50.10 Aligned_cols=72 Identities=18% Similarity=0.199 Sum_probs=57.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC-eEEEEEe
Q psy4080 177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDG-RQIRVDF 255 (403)
Q Consensus 177 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g-~~i~V~~ 255 (403)
...+-|.|-+.|+.. -..|...|++||+|++..... + ..+-.|.|.+..+|++||. .||..|+| -.|-|..
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~----~--~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN----T--GNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKP 93 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS----S--SSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEE
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC----C--CCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEE
Confidence 345789999999985 567778899999999887621 1 1299999999999999994 59999985 6667766
Q ss_pred c
Q psy4080 256 S 256 (403)
Q Consensus 256 a 256 (403)
.
T Consensus 94 ~ 94 (119)
T 1wwh_A 94 C 94 (119)
T ss_dssp C
T ss_pred C
Confidence 4
No 374
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.91 E-value=0.0013 Score=50.96 Aligned_cols=54 Identities=19% Similarity=0.275 Sum_probs=45.5
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhC
Q psy4080 180 RCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACT 242 (403)
Q Consensus 180 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~ 242 (403)
+.++| ++|+.+...||.++|+.|| -..|..+-| | -|||.|.+++.|..||..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidD--T-----sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD--T-----SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEET--T-----EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcC--C-----eEEEEecCHHHHHHHHHhcc
Confidence 45666 9999999999999999999 446666665 2 89999999999999998764
No 375
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.89 E-value=0.00067 Score=55.48 Aligned_cols=45 Identities=11% Similarity=-0.018 Sum_probs=30.4
Q ss_pred ceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcce-eeeeecc
Q psy4080 281 TQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRI-SPLQFSG 334 (403)
Q Consensus 281 ~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~-~fv~f~~ 334 (403)
..|||+||+..+++.+|.++|+.|| .|+.|.++. . .|| |||+|..
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG---~V~~v~i~~-~-----~Gf~aFVef~~ 71 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVG---KVQRIVIFK-R-----NGIQAMVEFES 71 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTS---CEEEEEEEE-S-----SSEEEEEEESS
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcC---CEEEEEEEe-C-----CCCEEEEEECC
Confidence 4578999998877776555555554 555555553 1 265 9999964
No 376
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=96.81 E-value=0.0011 Score=53.93 Aligned_cols=46 Identities=7% Similarity=-0.072 Sum_probs=32.3
Q ss_pred CCCceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
....+|||+|+ .+++.+++++|+.||++..| .++ ..++||||+|..
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v---~i~------~~kg~aFV~f~~ 82 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDL---SMD------PPRNCAFVTYEK 82 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCE---EEE------TTTTEEEEECSS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEE---EEe------CCCCEEEEEECC
Confidence 34678999996 46666666666666655544 443 578999999975
No 377
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=96.68 E-value=0.0013 Score=53.20 Aligned_cols=56 Identities=16% Similarity=0.023 Sum_probs=42.8
Q ss_pred CCceeeeCCCCCc--cccchHHHHHHhcCCcceEEEEEEeeeCC----CCCCcceeeeeecc
Q psy4080 279 NNTQSELGSLLSE--KHAIKGGKFEEVFGEIATVVGVGAVTMTE----MSGNGRISPLQFSG 334 (403)
Q Consensus 279 ~~~~~~vg~l~~~--~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~----~~~~~g~~fv~f~~ 334 (403)
.+..|++.|+... ..++..++|.+.|++||.|..|.++++.. ++..+|++||+|+.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~ 80 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSI 80 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECC
Confidence 4567788887543 23345688999999999999999998865 34567999999975
No 378
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=96.43 E-value=0.00077 Score=64.88 Aligned_cols=49 Identities=12% Similarity=-0.068 Sum_probs=34.2
Q ss_pred cCCCceeeeCC--CCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 277 QLNNTQSELGS--LLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 277 ~~~~~~~~vg~--l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
...+.+|||+| |...+++++++++|+.|| +|..|.++. .+|||||+|+.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G---~V~~v~~~~------~kgfaFV~f~~ 65 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCG---LVDALLMPP------NKPYSFARYRT 65 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTS---CEEEEECCT------TCSEEEEEESS
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcC---CeEEEEEeC------CCCEEEEEECC
Confidence 34567899998 466677777666666665 455555542 57999999964
No 379
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=96.33 E-value=0.0036 Score=49.46 Aligned_cols=55 Identities=5% Similarity=-0.080 Sum_probs=40.1
Q ss_pred CceeeeCCCCCcc-------ccchHHHHHHhcCCcceEEEEEEeeeCCC--CCCcceeeeeecc
Q psy4080 280 NTQSELGSLLSEK-------HAIKGGKFEEVFGEIATVVGVGAVTMTEM--SGNGRISPLQFSG 334 (403)
Q Consensus 280 ~~~~~vg~l~~~~-------~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~--~~~~g~~fv~f~~ 334 (403)
+..|.+.|+.... .++..++|.+.|+++|.|+.|.++++..+ ..++|++||+|+.
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~ 68 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTS 68 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESS
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECC
Confidence 4556677764422 12344688888999999999999987654 3678999999975
No 380
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.28 E-value=0.0089 Score=46.21 Aligned_cols=79 Identities=15% Similarity=0.129 Sum_probs=54.8
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCC--CcceEEEEEecCHHHHHHHHHHhCCceeCC-----eE
Q psy4080 178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTG--RSRGFCFVYFESRDDAAAAKDACTGMEIDG-----RQ 250 (403)
Q Consensus 178 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg--~~rG~afV~f~~~~~a~~Al~~l~g~~l~g-----~~ 250 (403)
.+-+|.|..||+.+||+++.+.+...-++.....+..+.+. ..-.-|||.|.+.+++....+.++|..+-+ -+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 35689999999999999998888776444322222211111 122478999999999999999999998632 23
Q ss_pred EEEEec
Q psy4080 251 IRVDFS 256 (403)
Q Consensus 251 i~V~~a 256 (403)
..|++|
T Consensus 88 a~VE~A 93 (97)
T 2l08_A 88 AVVEFA 93 (97)
T ss_dssp EEEEEC
T ss_pred eEEEec
Confidence 446665
No 381
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.09 E-value=0.011 Score=46.13 Aligned_cols=35 Identities=9% Similarity=0.010 Sum_probs=23.1
Q ss_pred cccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 292 KHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 292 ~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
+++.+|+++|+.| |.|+.|.++ +.++|||||+|..
T Consensus 29 ~te~~L~~~F~~~---G~V~~v~i~-----~~~rGfaFVeF~~ 63 (100)
T 2d9o_A 29 YSKDVLLRLLQKY---GEVLNLVLS-----SKKPGTAVVEFAT 63 (100)
T ss_dssp CCHHHHHHHHHTT---SCEEEEEEE-----SSSSSEEEEEESC
T ss_pred CCHHHHHHHHHhc---CCEEEEEEc-----cCCCCEEEEEECC
Confidence 3455555555555 556666666 3689999999975
No 382
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.02 E-value=0.0062 Score=48.42 Aligned_cols=53 Identities=2% Similarity=-0.024 Sum_probs=35.2
Q ss_pred CCCceeeeCCCCCccc--------cchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSEKH--------AIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~~~--------~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.....|+|.||..... +..+++|.+.|+++|.|..|.+ .+. .++||+||+|..
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~ 73 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRD 73 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSC
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECC
Confidence 3467899999954432 1124567777777777777744 333 379999999974
No 383
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=95.88 E-value=0.0019 Score=51.00 Aligned_cols=49 Identities=8% Similarity=-0.080 Sum_probs=34.4
Q ss_pred eCCCCCccccchHH--------HHHHhc-CCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 285 LGSLLSEKHAIKGG--------KFEEVF-GEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 285 vg~l~~~~~~~~~~--------~l~~~F-g~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
+.+|+..+++.+++ +|.+.| +++|.|+.|.++++. .+.++|++||+|..
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~ 77 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRR 77 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECC
Confidence 34555555555554 344666 788888888898764 46889999999974
No 384
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.76 E-value=0.013 Score=47.84 Aligned_cols=76 Identities=17% Similarity=0.210 Sum_probs=53.7
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeEEE-EEEee--------CCCC-----CcceEEEEEecCHHHHHHHHHHhCCce
Q psy4080 180 RCLGVFGLSIYTTEQQINHIFSKYGPVERV-EVVID--------AKTG-----RSRGFCFVYFESRDDAAAAKDACTGME 245 (403)
Q Consensus 180 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v-~i~~d--------~~tg-----~~rG~afV~f~~~~~a~~Al~~l~g~~ 245 (403)
.-|.|-+.|+..+ ..+.+.|++||.|.+- .+... +.+. ....+..|+|.++.+|.+||. .||..
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 4677888887655 6667789999998762 11110 0000 023488999999999999995 59999
Q ss_pred eCCeEEEEEecc
Q psy4080 246 IDGRQIRVDFSV 257 (403)
Q Consensus 246 l~g~~i~V~~a~ 257 (403)
|+|.-|-|.+..
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999988887653
No 385
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.60 E-value=0.0047 Score=61.55 Aligned_cols=55 Identities=15% Similarity=0.266 Sum_probs=42.1
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHH
Q psy4080 180 RCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDA 240 (403)
Q Consensus 180 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~ 240 (403)
++|||. .|..+++.+|.++|++||+|.++.+..++ | -||.|+|.+.+++.+++..
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHSS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHhc
Confidence 789997 79999999999999999999998887543 2 3999999999999988743
No 386
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=94.40 E-value=0.02 Score=45.81 Aligned_cols=51 Identities=6% Similarity=-0.051 Sum_probs=35.1
Q ss_pred CceeeeCCCCCc-------cccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 280 NTQSELGSLLSE-------KHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 280 ~~~~~vg~l~~~-------~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
+..|.+.|+... ..++-.++|.+.|++||.|+.|.++++. .+|++||+|+.
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~ 64 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPS 64 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSS
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECC
Confidence 344555555442 2344556788888889999888886542 58999999975
No 387
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.00 E-value=0.036 Score=44.84 Aligned_cols=48 Identities=8% Similarity=0.036 Sum_probs=35.8
Q ss_pred CCCceeeeCCCCCc-cccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSE-KHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~-~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
.....|+|+||+.. ++.. +|.+.|.++|.|..|.++.+.. .|||.|..
T Consensus 16 ~~G~il~v~~l~~~~~sre---dLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~ 64 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCRE---DLHILFSNHGEIKWIDFVRGAK------EGIILFKE 64 (121)
T ss_dssp CCCCEEEEEESCCSSCCHH---HHHHHTCSSCCEEEEECCTTCS------EEEEEESS
T ss_pred cCCeEEEEecCCCCcCCHH---HHHHHHHhcCCEEEEEEecCCC------EEEEEECC
Confidence 44578999999888 6544 4666666777888888887644 38999975
No 388
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=90.39 E-value=0.2 Score=44.46 Aligned_cols=42 Identities=17% Similarity=-0.021 Sum_probs=33.7
Q ss_pred ccchHHHHHHhcCCcceEEEEEEeeeCCC----CCCcceeeeeecc
Q psy4080 293 HAIKGGKFEEVFGEIATVVGVGAVTMTEM----SGNGRISPLQFSG 334 (403)
Q Consensus 293 ~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~----~~~~g~~fv~f~~ 334 (403)
.+...++|++.|+++|.|..+.++++..+ +..+|++||+|..
T Consensus 139 ~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~ 184 (222)
T 3dxb_A 139 DDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSI 184 (222)
T ss_dssp CTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESS
T ss_pred HHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECC
Confidence 34556789999999999999999866444 4788999999975
No 389
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=87.69 E-value=1.1 Score=45.07 Aligned_cols=56 Identities=18% Similarity=0.300 Sum_probs=45.6
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhC
Q psy4080 178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACT 242 (403)
Q Consensus 178 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~ 242 (403)
....++|+ +|..+...+|.++|+.||.| .|..+.+ | .|||.|.+.+.|..++.++.
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd--t-----~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD--T-----SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS--S-----EEEEECSCHHHHHHHHHHHT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC--C-----eEEEEECCHHHHHHHHHHHH
Confidence 34566666 99999999999999999964 5555444 2 89999999999999998875
No 390
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.80 E-value=1.1 Score=33.95 Aligned_cols=30 Identities=13% Similarity=0.081 Sum_probs=23.7
Q ss_pred HHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 297 GGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 297 ~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
..+|.+.|..||+|+.++++.+. +||+|..
T Consensus 29 ~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d 58 (91)
T 2dnr_A 29 IDELLQQFASFGEVILIRFVEDK--------MWVTFLE 58 (91)
T ss_dssp HHHHHHHHHTTCCEEEEEECSSS--------EEEEESS
T ss_pred HHHHHHHHHhCCCeEEEEEecCC--------EEEEECC
Confidence 35677788888899999999753 7999964
No 391
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.26 E-value=0.87 Score=34.83 Aligned_cols=49 Identities=10% Similarity=0.023 Sum_probs=30.7
Q ss_pred CCCceeeeCCCCCc-----ccc-chHHHHHHhcCCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 278 LNNTQSELGSLLSE-----KHA-IKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 278 ~~~~~~~vg~l~~~-----~~~-~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
..+.+++|..++.. .+. .-..+|.+.|..||+|+.++|+.+. +||+|..
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d 67 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFAD 67 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSC
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcC
Confidence 34567777666532 112 1123466666666678888998764 8999964
No 392
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=68.34 E-value=8.3 Score=27.58 Aligned_cols=67 Identities=10% Similarity=0.128 Sum_probs=41.7
Q ss_pred EEEEcC-CCCCCcHHHHHHHhhcCC-----CeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy4080 181 CLGVFG-LSIYTTEQQINHIFSKYG-----PVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVD 254 (403)
Q Consensus 181 ~l~V~n-Lp~~~te~~L~~~F~~~G-----~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~~l~g~~i~V~ 254 (403)
+|||.. --..+...+|..++..-+ .|-.|.|..+ |.||+-.. +.|..+++.|++..+.|+.+.|.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECT-TCHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECH-HHHHHHHHHhccccCcCceEEEE
Confidence 455532 123466677777776543 3556666433 88998876 45778888999999999999988
Q ss_pred ec
Q psy4080 255 FS 256 (403)
Q Consensus 255 ~a 256 (403)
.+
T Consensus 73 ~~ 74 (76)
T 2g0c_A 73 KA 74 (76)
T ss_dssp EC
T ss_pred EC
Confidence 76
No 393
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=40.24 E-value=51 Score=24.63 Aligned_cols=51 Identities=6% Similarity=-0.047 Sum_probs=33.2
Q ss_pred ceeeeCCCCCccccchHHHHHHhcCCcceEEEEEEeeeCCCCCCcce--eeeeecc
Q psy4080 281 TQSELGSLLSEKHAIKGGKFEEVFGEIATVVGVGAVTMTEMSGNGRI--SPLQFSG 334 (403)
Q Consensus 281 ~~~~vg~l~~~~~~~~~~~l~~~Fg~~g~v~~v~~~~~~~~~~~~g~--~fv~f~~ 334 (403)
.++.|..||...+++. +++.++....+..+.++.-.......-+ ||+.|..
T Consensus 2 ~KvVIRrLPP~Lteee---F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~ 54 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQ---LQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKN 54 (91)
T ss_dssp CEEEEEEECTTCCHHH---HHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESS
T ss_pred cEEEEeCCCCCCCHHH---HHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCC
Confidence 3678889988855554 7777777777777777654433332222 8888853
No 394
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=31.58 E-value=90 Score=26.31 Aligned_cols=56 Identities=11% Similarity=0.093 Sum_probs=37.3
Q ss_pred CEEEEcCCCCC---------CcHHHHHHHh--hcCCCeEEEEEEeeCCCCCcceEEEEEecCHHH-HHHHH
Q psy4080 180 RCLGVFGLSIY---------TTEQQINHIF--SKYGPVERVEVVIDAKTGRSRGFCFVYFESRDD-AAAAK 238 (403)
Q Consensus 180 ~~l~V~nLp~~---------~te~~L~~~F--~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~-a~~Al 238 (403)
-++.|-|+|.. ....+|.+.| ..|.++. |..+..+ .-+.|+|.|+|..--. -..|+
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHH
Confidence 35778888862 3457899977 8998875 4444432 2477899999996433 33444
No 395
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=26.69 E-value=2e+02 Score=21.37 Aligned_cols=57 Identities=11% Similarity=0.136 Sum_probs=45.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHh
Q psy4080 177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241 (403)
Q Consensus 177 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l 241 (403)
...+-|-|-|+|..+-..++.-.....|---.|..+- |.|.+.|.+.++...|+..|
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHH
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHH
Confidence 4578889999999998888877777777555555432 37999999999999999876
No 396
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=25.90 E-value=1.2e+02 Score=22.43 Aligned_cols=34 Identities=15% Similarity=0.197 Sum_probs=25.2
Q ss_pred eEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCc
Q psy4080 206 VERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGM 244 (403)
Q Consensus 206 i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l~g~ 244 (403)
|..|.+.. ...||-||++...++...++..+.|.
T Consensus 40 i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 40 VYSILASE-----SLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp EEEEEECT-----TSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEEec-----ccCCEEEEEEecchhHHHHHHCCCCc
Confidence 55555532 26789999999999988888766554
No 397
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=22.05 E-value=1.6e+02 Score=19.70 Aligned_cols=55 Identities=16% Similarity=0.117 Sum_probs=41.8
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHh
Q psy4080 180 RCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241 (403)
Q Consensus 180 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~afV~f~~~~~a~~Al~~l 241 (403)
.++.|.++.-.--...|...+.. ..|..+.+-.. .+-+.|+|.+.++...+|+.+
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHHc
Confidence 46889999887778889999998 78888777432 236788888777777888663
No 398
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=20.48 E-value=69 Score=28.98 Aligned_cols=33 Identities=15% Similarity=0.219 Sum_probs=25.8
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEE
Q psy4080 179 SRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVV 212 (403)
Q Consensus 179 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~ 212 (403)
...+.|+|||++++..-|..++.. ..+..+.++
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm 142 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLVFL 142 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEEEE
Confidence 356899999999999999999987 556544443
No 399
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=20.09 E-value=97 Score=24.22 Aligned_cols=47 Identities=15% Similarity=-0.043 Sum_probs=33.7
Q ss_pred CCceeeeCCCCCccccchHHHHHHhc-----CCcceEEEEEEeeeCCCCCCcceeeeeecc
Q psy4080 279 NNTQSELGSLLSEKHAIKGGKFEEVF-----GEIATVVGVGAVTMTEMSGNGRISPLQFSG 334 (403)
Q Consensus 279 ~~~~~~vg~l~~~~~~~~~~~l~~~F-----g~~g~v~~v~~~~~~~~~~~~g~~fv~f~~ 334 (403)
...++-+-+||.++++..+..|.+.+ |.+..| .++.| ..| |+|+|..
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI---~L~pD-----H~G-Aivef~d 71 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKI---LLVSD-----FNG-AIIIFRD 71 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEE---EEETT-----TTE-EEEECSC
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEE---EEecC-----CCc-eEEEEcc
Confidence 35667788999999999999999999 655544 45543 223 7888853
Done!