AmiGO: BLAST Results


BLAST match view associations BLAST with TRA2B TRA2B TRA2B Transformer-2 protein homolog beta	protein from Bos taurus	2.2e-40
BLAST match view associations BLAST with TRA2B TRA2B TRA2B Uncharacterized protein	protein from Canis lupus familiaris	2.2e-40
BLAST match view associations BLAST with TRA2B TRA2B TRA2B Transformer-2 protein homolog beta	protein from Homo sapiens	2.2e-40
BLAST match view associations BLAST with Tra2b Tra2b Tra2b transformer 2 beta homolog (Drosophila)	protein from Mus musculus	2.2e-40
BLAST match view associations BLAST with Tra2b Tra2b Tra2b transformer 2 beta homolog (Drosophila)	gene from Rattus norvegicus	2.2e-40
BLAST match view associations BLAST with TRA2B TRA2B TRA2B Uncharacterized protein	protein from Sus scrofa	2.8e-40
BLAST match view associations BLAST with TRA2B TRA2B TRA2B Transformer-2 beta	protein from Gallus gallus	1.2e-39
BLAST match view associations BLAST with tra2 tra2 tra2 transformer 2	protein from Drosophila melanogaster	4.0e-39
BLAST match view associations BLAST with Tra2a Tra2a Tra2a transformer 2 alpha homolog (Drosophila)	protein from Mus musculus	1.1e-38
BLAST match view associations BLAST with Tra2a Tra2a Tra2a transformer 2 alpha homolog (Drosophila)	gene from Rattus norvegicus	1.1e-38
BLAST match view associations BLAST with TRA2A TRA2A TRA2A Transformer 2 alpha homolog (Drosophila)	protein from Bos taurus	1.1e-38
BLAST match view associations BLAST with TRA2A TRA2A TRA2A Uncharacterized protein	protein from Canis lupus familiaris	1.1e-38
BLAST match view associations BLAST with TRA2A TRA2A TRA2A Transformer-2 protein homolog alpha	protein from Homo sapiens	1.1e-38
BLAST match view associations BLAST with TRA2A TRA2A TRA2A	protein from Sus scrofa	1.1e-38
BLAST match view associations BLAST with TRA2A TRA2A TRA2A Uncharacterized protein	protein from Gallus gallus	1.3e-38
BLAST match view associations BLAST with tra2a tra2a tra2a transformer-2 alpha	gene_product from Danio rerio	9.3e-38
BLAST match view associations BLAST with tra2b tra2b tra2b transformer 2 beta homolog (Drosophila)	gene_product from Danio rerio	5.1e-37
BLAST match view associations BLAST with TRA2A TRA2A TRA2A cDNA FLJ50614, highly similar to Transformer-2 protein homolog	protein from Homo sapiens	3.1e-35
BLAST match view associations BLAST with TRA2A TRA2A TRA2A Transformer-2 protein homolog alpha	protein from Homo sapiens	3.1e-35
BLAST match view associations BLAST with F1LVK5 F1LVK5 F1LVK5 Uncharacterized protein	protein from Rattus norvegicus	8.8e-32
BLAST match view associations BLAST with rsp-8 rsp-8 rsp-8	gene from Caenorhabditis elegans	3.5e-27
BLAST match view associations BLAST with tra2 tra2 tra2 putative transformer-2 protein	gene from Dictyostelium discoideum	3.1e-26
BLAST match view associations BLAST with TRA2B TRA2B TRA2B Transformer-2 protein homolog beta	protein from Homo sapiens	2.1e-22
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold inducible RNA binding protein	protein from Bos taurus	5.5e-14
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Canis lupus familiaris	5.5e-14
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Canis lupus familiaris	5.5e-14
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	5.5e-14
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	5.5e-14
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	5.5e-14
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	5.5e-14
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	5.5e-14
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	5.5e-14
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	5.5e-14
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Sus scrofa	5.5e-14
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Pongo abelii	5.5e-14
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Cricetulus griseus	7.1e-14
BLAST match view associations BLAST with Cirbp Cirbp Cirbp cold inducible RNA binding protein	protein from Mus musculus	7.1e-14
BLAST match view associations BLAST with Cirbp Cirbp Cirbp cold inducible RNA binding protein	gene from Rattus norvegicus	7.1e-14
BLAST match view associations BLAST with cirbp cirbp cirbp cold inducible RNA binding protein	gene_product from Danio rerio	7.1e-14
BLAST match view associations BLAST with cirbp cirbp cirbp Cold-inducible RNA-binding protein	protein from Xenopus (Silurana) tropicalis	3.4e-13
BLAST match view associations BLAST with cirbp-b cirbp-b cirbp-b Cold-inducible RNA-binding protein B	protein from Xenopus laevis	3.4e-13
BLAST match view associations BLAST with CIRBP CIRBP CIRBP cDNA FLJ52850, moderately similar to Cold-inducible RNA-binding protein	protein from Homo sapiens	7.1e-13
BLAST match view associations BLAST with cirbp cirbp cirbp Cold-inducible RNA-binding protein	protein from Rana catesbeiana	1.2e-12
BLAST match view associations BLAST with zgc:112425 zgc:112425 zgc:112425	gene_product from Danio rerio	1.6e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold inducible RNA binding protein, isoform CRA_c	protein from Homo sapiens	2.6e-12
BLAST match view associations BLAST with cirbp-a cirbp-a cirbp-a Cold-inducible RNA-binding protein A	protein from Xenopus laevis	7.5e-12
BLAST match view associations BLAST with E2R228 E2R228 E2R228 Uncharacterized protein	protein from Canis lupus familiaris	1.3e-11
BLAST match view associations BLAST with Rbm3 Rbm3 Rbm3 RNA binding motif protein 3	protein from Mus musculus	3.5e-11
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Putative RNA-binding protein 3	protein from Homo sapiens	4.5e-11
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Sus scrofa	7.6e-11
BLAST match view associations BLAST with AT3G08000 AT3G08000 AT3G08000	protein from Arabidopsis thaliana	1.3e-10
BLAST match view associations BLAST with F6RBQ9 F6RBQ9 F6RBQ9 Uncharacterized protein	protein from Bos taurus	2.1e-10
BLAST match view associations BLAST with Rbm3 Rbm3 Rbm3 RNA binding motif (RNP1, RRM) protein 3	gene from Rattus norvegicus	2.1e-10
BLAST match view associations BLAST with RAB33A RAB33A RAB33A Uncharacterized protein	protein from Gallus gallus	3.5e-10
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Canis lupus familiaris	3.5e-10
BLAST match view associations BLAST with blt801 blt801 blt801 Glycine-rich RNA-binding protein blt801	protein from Hordeum vulgare	3.5e-10
BLAST match view associations BLAST with GRP4 GRP4 GRP4 AT3G23830	protein from Arabidopsis thaliana	3.5e-10
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	7.5e-10
BLAST match view associations BLAST with AT3G46020 AT3G46020 AT3G46020	protein from Arabidopsis thaliana	7.5e-10
BLAST match view associations BLAST with AT5G06210 AT5G06210 AT5G06210	protein from Arabidopsis thaliana	1.2e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	3.4e-09
BLAST match view associations BLAST with I3LQ36 I3LQ36 I3LQ36 Uncharacterized protein	protein from Sus scrofa	3.4e-09
BLAST match view associations BLAST with ncbp2 ncbp2 ncbp2 Nuclear cap-binding protein subunit 2	protein from Esox lucius	3.4e-09
BLAST match view associations BLAST with ncbp2 ncbp2 ncbp2 Nuclear cap-binding protein subunit 2	protein from Xenopus laevis	3.4e-09
BLAST match view associations BLAST with CBU_1183 CBU_1183 CBU_1183 Glycine-rich RNA-binding protein	protein from Coxiella burnetii RSA 493	4.5e-09
BLAST match view associations BLAST with CBU_1183 CBU_1183 CBU_1183 nucleic acid binding domain protein	protein from Coxiella burnetii RSA 493	4.5e-09
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Sus scrofa	5.7e-09
BLAST match view associations BLAST with NCBP2 NCBP2 NCBP2 Nuclear cap-binding protein subunit 2	protein from Taeniopygia guttata	5.7e-09
BLAST match view associations BLAST with ncbp2 ncbp2 ncbp2 Nuclear cap-binding protein subunit 2	protein from Salmo salar	5.7e-09
BLAST match view associations BLAST with ncbp2 ncbp2 ncbp2 Nuclear cap-binding protein subunit 2	protein from Xenopus (Silurana) tropicalis	5.7e-09
BLAST match view associations BLAST with ncbp2 ncbp2 ncbp2 nuclear cap binding protein subunit 2	gene_product from Danio rerio	5.7e-09
BLAST match view associations BLAST with NCBP2 NCBP2 NCBP2 Nuclear cap-binding protein subunit 2	protein from Gallus gallus	7.4e-09
BLAST match view associations BLAST with CG11266 CG11266 CG11266	protein from Drosophila melanogaster	8.4e-09
BLAST match view associations BLAST with NCBP2 NCBP2 NCBP2 Nuclear cap-binding protein subunit 2	protein from Bos taurus	9.5e-09
BLAST match view associations BLAST with NCBP2 NCBP2 NCBP2 Uncharacterized protein	protein from Canis lupus familiaris	9.5e-09
BLAST match view associations BLAST with NCBP2 NCBP2 NCBP2 Nuclear cap-binding protein subunit 2	protein from Homo sapiens	9.5e-09
BLAST match view associations BLAST with NCBP2 NCBP2 NCBP2 Uncharacterized protein	protein from Sus scrofa	9.5e-09
BLAST match view associations BLAST with ncbp2 ncbp2 ncbp2 Nuclear cap-binding protein subunit 2	protein from Siniperca chuatsi	9.5e-09
BLAST match view associations BLAST with Ncbp2 Ncbp2 Ncbp2 nuclear cap binding protein subunit 2	protein from Mus musculus	9.5e-09
BLAST match view associations BLAST with Ncbp2 Ncbp2 Ncbp2 nuclear cap binding protein subunit 2	gene from Rattus norvegicus	9.5e-09
BLAST match view associations BLAST with GR-RBP5 GR-RBP5 GR-RBP5 AT1G74230	protein from Arabidopsis thaliana	1.0e-08
BLAST match view associations BLAST with NCL NCL NCL Nucleolin	protein from Homo sapiens	1.1e-08
BLAST match view associations BLAST with R09B3.2 R09B3.2 R09B3.2	gene from Caenorhabditis elegans	1.2e-08
BLAST match view associations BLAST with DDB_G0292698 DDB_G0292698 DDB_G0292698 RNA-binding region RNP-1 domain-containing protein	gene from Dictyostelium discoideum	1.3e-08
BLAST match view associations BLAST with CG10466 CG10466 CG10466	protein from Drosophila melanogaster	1.6e-08
BLAST match view associations BLAST with Rbmx2 Rbmx2 Rbmx2 RNA-binding motif protein, X-linked 2	protein from Rattus norvegicus	1.9e-08
BLAST match view associations BLAST with Rbmx2 Rbmx2 Rbmx2 RNA binding motif protein, X-linked 2	gene from Rattus norvegicus	2.0e-08
BLAST match view associations BLAST with LOC100737174 LOC100737174 LOC100737174 Uncharacterized protein	protein from Sus scrofa	2.0e-08
BLAST match view associations BLAST with GR-RBP2 GR-RBP2 GR-RBP2 AT4G13850	protein from Arabidopsis thaliana	2.0e-08
BLAST match view associations BLAST with Rbmx2 Rbmx2 Rbmx2 RNA binding motif protein, X-linked 2	protein from Mus musculus	2.5e-08
BLAST match view associations BLAST with Cbp20 Cbp20 Cbp20 cap binding protein 20	protein from Drosophila melanogaster	2.6e-08
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  psy4080
        (403 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

UNIPROTKB|Q3ZBT6 - symbol:TRA2B "Transformer-2 protein ho...   383  2.2e-40   2
UNIPROTKB|E2RD37 - symbol:TRA2B "Uncharacterized protein"...   383  2.2e-40   2
UNIPROTKB|P62995 - symbol:TRA2B "Transformer-2 protein ho...   383  2.2e-40   2
MGI|MGI:106016 - symbol:Tra2b "transformer 2 beta homolog...   383  2.2e-40   2
RGD|619886 - symbol:Tra2b "transformer 2 beta homolog (Dr...   383  2.2e-40   2
UNIPROTKB|I3LBN9 - symbol:TRA2B "Uncharacterized protein"...   382  2.8e-40   2
UNIPROTKB|Q9DDU8 - symbol:TRA2B "Uncharacterized protein"...   379  1.2e-39   2
FB|FBgn0003742 - symbol:tra2 "transformer 2" species:7227...   397  4.0e-39   2
MGI|MGI:1933972 - symbol:Tra2a "transformer 2 alpha homol...   381  1.1e-38   2
RGD|1562563 - symbol:Tra2a "transformer 2 alpha homolog (...   381  1.1e-38   2
UNIPROTKB|Q2KJ71 - symbol:TRA2A "Transformer 2 alpha homo...   381  1.1e-38   2
UNIPROTKB|E2R4B2 - symbol:TRA2A "Uncharacterized protein"...   381  1.1e-38   2
UNIPROTKB|Q13595 - symbol:TRA2A "Transformer-2 protein ho...   381  1.1e-38   2
UNIPROTKB|Q06AA6 - symbol:TRA2A "Uncharacterized protein"...   381  1.1e-38   2
UNIPROTKB|F1NPM7 - symbol:TRA2A "Uncharacterized protein"...   379  1.3e-38   2
ZFIN|ZDB-GENE-040426-1391 - symbol:tra2a "transformer-2 a...   376  9.3e-38   2
ZFIN|ZDB-GENE-040426-1094 - symbol:tra2b "transformer 2 b...   363  5.1e-37   2
UNIPROTKB|B4DQI6 - symbol:TRA2A "cDNA FLJ50614, highly si...   381  3.1e-35   1
UNIPROTKB|B4DUA9 - symbol:TRA2A "Transformer-2 protein ho...   381  3.1e-35   1
UNIPROTKB|E1C875 - symbol:TRA2A "Uncharacterized protein"...   379  5.1e-35   1
UNIPROTKB|F1LVK5 - symbol:F1LVK5 "Uncharacterized protein...   324  8.8e-32   2
WB|WBGene00004705 - symbol:rsp-8 species:6239 "Caenorhabd...   305  3.5e-27   1
DICTYBASE|DDB_G0278349 - symbol:tra2 "putative transforme...   274  3.1e-26   2
UNIPROTKB|H7BXF3 - symbol:TRA2B "Transformer-2 protein ho...   260  2.1e-22   1
UNIPROTKB|Q3SZN4 - symbol:CIRBP "Uncharacterized protein"...   184  5.5e-14   1
UNIPROTKB|E2R6G2 - symbol:CIRBP "Uncharacterized protein"...   184  5.5e-14   1
UNIPROTKB|F6XHA7 - symbol:CIRBP "Uncharacterized protein"...   184  5.5e-14   1
UNIPROTKB|K7EJV5 - symbol:CIRBP "Cold-inducible RNA-bindi...   184  5.5e-14   1
UNIPROTKB|K7EMY9 - symbol:CIRBP "Cold-inducible RNA-bindi...   184  5.5e-14   1
UNIPROTKB|K7ENX8 - symbol:CIRBP "Cold-inducible RNA-bindi...   184  5.5e-14   1
UNIPROTKB|K7EPM4 - symbol:CIRBP "Cold-inducible RNA-bindi...   184  5.5e-14   1
UNIPROTKB|K7EQR7 - symbol:CIRBP "Cold-inducible RNA-bindi...   184  5.5e-14   1
UNIPROTKB|K7ER40 - symbol:CIRBP "Cold-inducible RNA-bindi...   184  5.5e-14   1
UNIPROTKB|Q14011 - symbol:CIRBP "Cold-inducible RNA-bindi...   184  5.5e-14   1
UNIPROTKB|F1S6R1 - symbol:CIRBP "Uncharacterized protein"...   184  5.5e-14   1
UNIPROTKB|Q5RF83 - symbol:CIRBP "Cold-inducible RNA-bindi...   184  5.5e-14   1
UNIPROTKB|H9KZV5 - symbol:CIRBP "Uncharacterized protein"...   183  7.1e-14   1
UNIPROTKB|H9L0U4 - symbol:CIRBP "Uncharacterized protein"...   183  7.1e-14   1
UNIPROTKB|H9L3B3 - symbol:CIRBP "Uncharacterized protein"...   183  7.1e-14   1
UNIPROTKB|P60826 - symbol:CIRBP "Cold-inducible RNA-bindi...   183  7.1e-14   1
MGI|MGI:893588 - symbol:Cirbp "cold inducible RNA binding...   183  7.1e-14   1
RGD|620756 - symbol:Cirbp "cold inducible RNA binding pro...   183  7.1e-14   1
ZFIN|ZDB-GENE-030131-5841 - symbol:cirbp "cold inducible ...   183  7.1e-14   1
UNIPROTKB|Q28IQ9 - symbol:cirbp "Cold-inducible RNA-bindi...   177  3.4e-13   1
UNIPROTKB|Q9DED4 - symbol:cirbp-b "Cold-inducible RNA-bin...   177  3.4e-13   1
UNIPROTKB|B4E2X2 - symbol:CIRBP "Cold-inducible RNA-bindi...   184  7.1e-13   1
UNIPROTKB|Q9PTX2 - symbol:cirbp "Cold-inducible RNA-bindi...   172  1.2e-12   1
ZFIN|ZDB-GENE-050417-329 - symbol:zgc:112425 "zgc:112425"...   171  1.6e-12   1
UNIPROTKB|D6W5Y5 - symbol:CIRBP "Cold-inducible RNA-bindi...   184  2.6e-12   1
UNIPROTKB|O93235 - symbol:cirbp-a "Cold-inducible RNA-bin...   165  7.5e-12   1
UNIPROTKB|E2R228 - symbol:E2R228 "Uncharacterized protein...   163  1.3e-11   1
ASPGD|ASPL0000040642 - symbol:AN2989 species:162425 "Emer...   159  3.5e-11   1
MGI|MGI:1099460 - symbol:Rbm3 "RNA binding motif protein ...   159  3.5e-11   1
ASPGD|ASPL0000005578 - symbol:AN6676 species:162425 "Emer...   175  3.9e-11   1
UNIPROTKB|P98179 - symbol:RBM3 "Putative RNA-binding prot...   158  4.5e-11   1
UNIPROTKB|I3L5X7 - symbol:RBM3 "Uncharacterized protein" ...   156  7.6e-11   1
UNIPROTKB|G3V6P6 - symbol:Rbm3 "Putative RNA-binding prot...   156  7.6e-11   1
TAIR|locus:2077427 - symbol:AT3G08000 species:3702 "Arabi...   154  1.3e-10   1
UNIPROTKB|F6RBQ9 - symbol:F6RBQ9 "Uncharacterized protein...   152  2.1e-10   1
RGD|620145 - symbol:Rbm3 "RNA binding motif (RNP1, RRM) p...   152  2.1e-10   1
UNIPROTKB|F1P133 - symbol:F1P133 "Uncharacterized protein...   150  3.5e-10   1
UNIPROTKB|E2R771 - symbol:RBM3 "Uncharacterized protein" ...   150  3.5e-10   1
UNIPROTKB|Q43472 - symbol:blt801 "Glycine-rich RNA-bindin...   150  3.5e-10   1
TAIR|locus:2076096 - symbol:GRP4 "glycine-rich RNA-bindin...   150  3.5e-10   1
UNIPROTKB|K7ELT6 - symbol:CIRBP "Cold-inducible RNA-bindi...   147  7.5e-10   1
TAIR|locus:2077137 - symbol:AT3G46020 species:3702 "Arabi...   147  7.5e-10   1
TAIR|locus:2160752 - symbol:AT5G06210 species:3702 "Arabi...   145  1.2e-09   1
POMBASE|SPAC25G10.01 - symbol:SPAC25G10.01 "RNA-binding p...   161  1.6e-09   1
UNIPROTKB|K7ELV6 - symbol:CIRBP "Cold-inducible RNA-bindi...   141  3.4e-09   1
UNIPROTKB|I3LQ36 - symbol:I3LQ36 "Uncharacterized protein...   141  3.4e-09   1
UNIPROTKB|C1BY64 - symbol:ncbp2 "Nuclear cap-binding prot...   141  3.4e-09   1
UNIPROTKB|P52299 - symbol:ncbp2 "Nuclear cap-binding prot...   141  3.4e-09   1
UNIPROTKB|Q83CD7 - symbol:CBU_1183 "Glycine-rich RNA-bind...   140  4.5e-09   1
TIGR_CMR|CBU_1183 - symbol:CBU_1183 "nucleic acid binding...   140  4.5e-09   1
UNIPROTKB|K7GNR2 - symbol:RBMX "Uncharacterized protein" ...   139  5.7e-09   1
UNIPROTKB|B5G279 - symbol:NCBP2 "Nuclear cap-binding prot...   139  5.7e-09   1
UNIPROTKB|C0H859 - symbol:ncbp2 "Nuclear cap-binding prot...   139  5.7e-09   1
UNIPROTKB|Q6DES0 - symbol:ncbp2 "Nuclear cap-binding prot...   139  5.7e-09   1
ZFIN|ZDB-GENE-020419-31 - symbol:ncbp2 "nuclear cap bindi...   139  5.7e-09   1
UNIPROTKB|Q5ZKR5 - symbol:NCBP2 "Nuclear cap-binding prot...   138  7.4e-09   1
FB|FBgn0031883 - symbol:CG11266 species:7227 "Drosophila ...   142  8.4e-09   2
UNIPROTKB|Q3ZBJ1 - symbol:NCBP2 "Nuclear cap-binding prot...   137  9.5e-09   1
UNIPROTKB|E2RFC9 - symbol:NCBP2 "Uncharacterized protein"...   137  9.5e-09   1
UNIPROTKB|P52298 - symbol:NCBP2 "Nuclear cap-binding prot...   137  9.5e-09   1
UNIPROTKB|F2Z5Q9 - symbol:NCBP2 "Uncharacterized protein"...   137  9.5e-09   1
UNIPROTKB|A2SW84 - symbol:ncbp2 "Nuclear cap-binding prot...   137  9.5e-09   1
MGI|MGI:1915342 - symbol:Ncbp2 "nuclear cap binding prote...   137  9.5e-09   1
RGD|1596188 - symbol:Ncbp2 "nuclear cap binding protein s...   137  9.5e-09   1
TAIR|locus:2019622 - symbol:GR-RBP5 "AT1G74230" species:3...   154  1.0e-08   1
UNIPROTKB|H7BY16 - symbol:NCL "Nucleolin" species:9606 "H...   154  1.1e-08   1
WB|WBGene00011155 - symbol:R09B3.2 species:6239 "Caenorha...   136  1.2e-08   1
DICTYBASE|DDB_G0292698 - symbol:DDB_G0292698 "RNA-binding...   151  1.3e-08   2
FB|FBgn0032822 - symbol:CG10466 species:7227 "Drosophila ...   135  1.6e-08   1
POMBASE|SPBC13A2.01c - symbol:SPBC13A2.01c "nuclear cap-b...   135  1.6e-08   1
UNIPROTKB|F1LMQ9 - symbol:Rbmx2 "RNA-binding motif protei...   153  1.9e-08   1
RGD|1562693 - symbol:Rbmx2 "RNA binding motif protein, X-...   153  2.0e-08   1
UNIPROTKB|F1SMV6 - symbol:LOC100737174 "Uncharacterized p...   154  2.0e-08   1
TAIR|locus:2119495 - symbol:GR-RBP2 "AT4G13850" species:3...   134  2.0e-08   1
MGI|MGI:1919414 - symbol:Rbmx2 "RNA binding motif protein...   152  2.5e-08   1
FB|FBgn0022943 - symbol:Cbp20 "cap binding protein 20" sp...   133  2.6e-08   1

WARNING:  Descriptions of 537 database sequences were not reported due to the
          limiting value of parameter V = 100.


>UNIPROTKB|Q3ZBT6 [details] [associations]
            symbol:TRA2B "Transformer-2 protein homolog beta"
            species:9913 "Bos taurus" [GO:0003729 "mRNA binding" evidence=ISS]
            [GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0000398 GO:GO:0048026 GO:GO:0000381 HOGENOM:HOG000276232
            GeneTree:ENSGT00700000104309 HSSP:P62995 KO:K12897
            OrthoDB:EOG4BVRW2 EMBL:BC103113 IPI:IPI00717759
            RefSeq:NP_001029948.1 UniGene:Bt.49333 ProteinModelPortal:Q3ZBT6
            SMR:Q3ZBT6 STRING:Q3ZBT6 PRIDE:Q3ZBT6 Ensembl:ENSBTAT00000002225
            GeneID:615156 KEGG:bta:615156 CTD:6434 eggNOG:NOG297815
            HOVERGEN:HBG104971 InParanoid:Q3ZBT6 OMA:YDDREYY NextBio:20899475
            Uniprot:Q3ZBT6
        Length = 288

 Score = 383 (139.9 bits), Expect = 2.2e-40, Sum P(2) = 2.2e-40
 Identities = 68/103 (66%), Positives = 83/103 (80%)

Query:   173 RENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRD 232
             R NP P+ CLGVFGLS+YTTE+ +  +FSKYGP+  V +V D ++ RSRGF FVYFE+ D
Sbjct:   111 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVD 170

Query:   233 DAAAAKDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTY 275
             DA  AK+   GME+DGR+IRVDFS+T+R HTPTPGIYMGRPTY
Sbjct:   171 DAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTY 213

 Score = 63 (27.2 bits), Expect = 2.2e-40, Sum P(2) = 2.2e-40
 Identities = 23/60 (38%), Positives = 32/60 (53%)

Query:    29 SHVSGRLLPKEPAQTSSDQCYYRL-SPARSGSAG-SIDDKKYRKSITRSRSGS-PHRRSK 85
             +H SG+     PA++ S +   R  S +RS S   S   +  R+  TRSRS S  HRRS+
Sbjct:    23 AHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYTRSRSRSRSHRRSR 82

 Score = 53 (23.7 bits), Expect = 2.5e-39, Sum P(2) = 2.5e-39
 Identities = 18/37 (48%), Positives = 22/37 (59%)

Query:    51 RLSPARSGSAGSIDDKKYR-KSITRSRSGSPHRRSKR 86
             R +PARS S    D ++ R KS +RS S S  RRS R
Sbjct:    31 RHTPARSRSKE--DSRRSRSKSRSRSESRSRSRRSSR 65

 Score = 39 (18.8 bits), Expect = 7.3e-38, Sum P(2) = 7.3e-38
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query:    69 RKSITRSRSGSPHRRSK 85
             R+S + SRSGS H   K
Sbjct:    12 RESRSASRSGSAHGSGK 28


>UNIPROTKB|E2RD37 [details] [associations]
            symbol:TRA2B "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 OMA:YDDREYY EMBL:AAEX03017294
            ProteinModelPortal:E2RD37 PRIDE:E2RD37 Ensembl:ENSCAFT00000021194
            NextBio:20853966 Uniprot:E2RD37
        Length = 288

 Score = 383 (139.9 bits), Expect = 2.2e-40, Sum P(2) = 2.2e-40
 Identities = 68/103 (66%), Positives = 83/103 (80%)

Query:   173 RENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRD 232
             R NP P+ CLGVFGLS+YTTE+ +  +FSKYGP+  V +V D ++ RSRGF FVYFE+ D
Sbjct:   111 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVD 170

Query:   233 DAAAAKDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTY 275
             DA  AK+   GME+DGR+IRVDFS+T+R HTPTPGIYMGRPTY
Sbjct:   171 DAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTY 213

 Score = 63 (27.2 bits), Expect = 2.2e-40, Sum P(2) = 2.2e-40
 Identities = 23/60 (38%), Positives = 32/60 (53%)

Query:    29 SHVSGRLLPKEPAQTSSDQCYYRL-SPARSGSAG-SIDDKKYRKSITRSRSGS-PHRRSK 85
             +H SG+     PA++ S +   R  S +RS S   S   +  R+  TRSRS S  HRRS+
Sbjct:    23 AHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYTRSRSRSRSHRRSR 82

 Score = 53 (23.7 bits), Expect = 2.5e-39, Sum P(2) = 2.5e-39
 Identities = 18/37 (48%), Positives = 22/37 (59%)

Query:    51 RLSPARSGSAGSIDDKKYR-KSITRSRSGSPHRRSKR 86
             R +PARS S    D ++ R KS +RS S S  RRS R
Sbjct:    31 RHTPARSRSKE--DSRRSRSKSRSRSESRSRSRRSSR 65

 Score = 39 (18.8 bits), Expect = 7.3e-38, Sum P(2) = 7.3e-38
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query:    69 RKSITRSRSGSPHRRSK 85
             R+S + SRSGS H   K
Sbjct:    12 RESRSASRSGSAHGSGK 28


>UNIPROTKB|P62995 [details] [associations]
            symbol:TRA2B "Transformer-2 protein homolog beta"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0000375 "RNA splicing, via
            transesterification reactions" evidence=TAS] [GO:0000381
            "regulation of alternative mRNA splicing, via spliceosome"
            evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0048026
            "positive regulation of mRNA splicing, via spliceosome"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            EMBL:CH471052 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
            GO:GO:0048026 GO:GO:0000381 HOGENOM:HOG000276232 KO:K12897
            OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 HOVERGEN:HBG104971
            OMA:YDDREYY EMBL:U61267 EMBL:U87836 EMBL:AF057159 EMBL:U68063
            EMBL:AK301118 EMBL:BC000160 EMBL:BC000451 EMBL:BC005898
            IPI:IPI00220938 IPI:IPI00301503 IPI:IPI00472633
            RefSeq:NP_001230808.1 RefSeq:NP_004584.1 UniGene:Hs.533122 PDB:2CQC
            PDB:2KXN PDB:2RRA PDB:2RRB PDBsum:2CQC PDBsum:2KXN PDBsum:2RRA
            PDBsum:2RRB ProteinModelPortal:P62995 SMR:P62995 DIP:DIP-42278N
            IntAct:P62995 MINT:MINT-5004415 STRING:P62995 PhosphoSite:P62995
            DMDM:51703330 PaxDb:P62995 PRIDE:P62995 DNASU:6434
            Ensembl:ENST00000342294 Ensembl:ENST00000382191
            Ensembl:ENST00000453386 Ensembl:ENST00000456380 GeneID:6434
            KEGG:hsa:6434 UCSC:uc003fpv.3 GeneCards:GC03M185632
            H-InvDB:HIX0003928 HGNC:HGNC:10781 HPA:CAB011692 MIM:602719
            neXtProt:NX_P62995 PharmGKB:PA35697 InParanoid:P62995
            PhylomeDB:P62995 ChiTaRS:TRA2B EvolutionaryTrace:P62995
            GenomeRNAi:6434 NextBio:24991 Bgee:P62995 CleanEx:HS_SFRS10
            Genevestigator:P62995 GermOnline:ENSG00000136527 Uniprot:P62995
        Length = 288

 Score = 383 (139.9 bits), Expect = 2.2e-40, Sum P(2) = 2.2e-40
 Identities = 68/103 (66%), Positives = 83/103 (80%)

Query:   173 RENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRD 232
             R NP P+ CLGVFGLS+YTTE+ +  +FSKYGP+  V +V D ++ RSRGF FVYFE+ D
Sbjct:   111 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVD 170

Query:   233 DAAAAKDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTY 275
             DA  AK+   GME+DGR+IRVDFS+T+R HTPTPGIYMGRPTY
Sbjct:   171 DAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTY 213

 Score = 63 (27.2 bits), Expect = 2.2e-40, Sum P(2) = 2.2e-40
 Identities = 23/60 (38%), Positives = 32/60 (53%)

Query:    29 SHVSGRLLPKEPAQTSSDQCYYRL-SPARSGSAG-SIDDKKYRKSITRSRSGS-PHRRSK 85
             +H SG+     PA++ S +   R  S +RS S   S   +  R+  TRSRS S  HRRS+
Sbjct:    23 AHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYTRSRSRSRSHRRSR 82

 Score = 53 (23.7 bits), Expect = 2.5e-39, Sum P(2) = 2.5e-39
 Identities = 18/37 (48%), Positives = 22/37 (59%)

Query:    51 RLSPARSGSAGSIDDKKYR-KSITRSRSGSPHRRSKR 86
             R +PARS S    D ++ R KS +RS S S  RRS R
Sbjct:    31 RHTPARSRSKE--DSRRSRSKSRSRSESRSRSRRSSR 65

 Score = 39 (18.8 bits), Expect = 7.3e-38, Sum P(2) = 7.3e-38
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query:    69 RKSITRSRSGSPHRRSK 85
             R+S + SRSGS H   K
Sbjct:    12 RESRSASRSGSAHGSGK 28


>MGI|MGI:106016 [details] [associations]
            symbol:Tra2b "transformer 2 beta homolog (Drosophila)"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISO] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
            "mRNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0048026 "positive regulation of mRNA
            splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            MGI:MGI:106016 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0000398 GO:GO:0048026 GO:GO:0000381
            HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 KO:K12897
            OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 HOVERGEN:HBG104971
            OMA:YDDREYY EMBL:X80232 EMBL:AK049573 EMBL:AK077418 EMBL:AK080378
            EMBL:BC061177 IPI:IPI00139259 IPI:IPI00457594 PIR:S68798
            RefSeq:NP_033212.1 UniGene:Mm.210352 UniGene:Mm.389440
            UniGene:Mm.442193 ProteinModelPortal:P62996 SMR:P62996
            STRING:P62996 PhosphoSite:P62996 PaxDb:P62996 PRIDE:P62996
            Ensembl:ENSMUST00000161286 Ensembl:ENSMUST00000162413 GeneID:20462
            KEGG:mmu:20462 UCSC:uc007ysc.1 InParanoid:P62996 NextBio:298551
            Bgee:P62996 Genevestigator:P62996 GermOnline:ENSMUSG00000022858
            Uniprot:P62996
        Length = 288

 Score = 383 (139.9 bits), Expect = 2.2e-40, Sum P(2) = 2.2e-40
 Identities = 68/103 (66%), Positives = 83/103 (80%)

Query:   173 RENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRD 232
             R NP P+ CLGVFGLS+YTTE+ +  +FSKYGP+  V +V D ++ RSRGF FVYFE+ D
Sbjct:   111 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVD 170

Query:   233 DAAAAKDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTY 275
             DA  AK+   GME+DGR+IRVDFS+T+R HTPTPGIYMGRPTY
Sbjct:   171 DAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTY 213

 Score = 63 (27.2 bits), Expect = 2.2e-40, Sum P(2) = 2.2e-40
 Identities = 23/60 (38%), Positives = 32/60 (53%)

Query:    29 SHVSGRLLPKEPAQTSSDQCYYRL-SPARSGSAG-SIDDKKYRKSITRSRSGS-PHRRSK 85
             +H SG+     PA++ S +   R  S +RS S   S   +  R+  TRSRS S  HRRS+
Sbjct:    23 AHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYTRSRSRSRSHRRSR 82

 Score = 53 (23.7 bits), Expect = 2.5e-39, Sum P(2) = 2.5e-39
 Identities = 18/37 (48%), Positives = 22/37 (59%)

Query:    51 RLSPARSGSAGSIDDKKYR-KSITRSRSGSPHRRSKR 86
             R +PARS S    D ++ R KS +RS S S  RRS R
Sbjct:    31 RHTPARSRSKE--DSRRSRSKSRSRSESRSRSRRSSR 65

 Score = 39 (18.8 bits), Expect = 7.3e-38, Sum P(2) = 7.3e-38
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query:    69 RKSITRSRSGSPHRRSK 85
             R+S + SRSGS H   K
Sbjct:    12 RESRSASRSGSAHGSGK 28


>RGD|619886 [details] [associations]
            symbol:Tra2b "transformer 2 beta homolog (Drosophila)"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000302 "response to reactive oxygen species"
            evidence=IEP] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISO;ISS] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=ISO;ISS] [GO:0003723 "RNA binding"
            evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISO;ISS]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=ISO;ISS] [GO:0048026 "positive regulation of mRNA
            splicing, via spliceosome" evidence=ISO;ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:619886 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0000302 GO:GO:0000398 GO:GO:0048026
            GO:GO:0000381 HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309
            KO:K12897 OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815
            HOVERGEN:HBG104971 EMBL:D49708 EMBL:BC070948 IPI:IPI00202484
            RefSeq:NP_476460.1 UniGene:Rn.8538 ProteinModelPortal:P62997
            SMR:P62997 IntAct:P62997 STRING:P62997 PhosphoSite:P62997
            PRIDE:P62997 Ensembl:ENSRNOT00000002429 GeneID:117259
            KEGG:rno:117259 UCSC:RGD:619886 InParanoid:P62997 NextBio:620130
            Genevestigator:P62997 GermOnline:ENSRNOG00000001783 Uniprot:P62997
        Length = 288

 Score = 383 (139.9 bits), Expect = 2.2e-40, Sum P(2) = 2.2e-40
 Identities = 68/103 (66%), Positives = 83/103 (80%)

Query:   173 RENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRD 232
             R NP P+ CLGVFGLS+YTTE+ +  +FSKYGP+  V +V D ++ RSRGF FVYFE+ D
Sbjct:   111 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVD 170

Query:   233 DAAAAKDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTY 275
             DA  AK+   GME+DGR+IRVDFS+T+R HTPTPGIYMGRPTY
Sbjct:   171 DAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTY 213

 Score = 63 (27.2 bits), Expect = 2.2e-40, Sum P(2) = 2.2e-40
 Identities = 23/60 (38%), Positives = 32/60 (53%)

Query:    29 SHVSGRLLPKEPAQTSSDQCYYRL-SPARSGSAG-SIDDKKYRKSITRSRSGS-PHRRSK 85
             +H SG+     PA++ S +   R  S +RS S   S   +  R+  TRSRS S  HRRS+
Sbjct:    23 AHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYTRSRSRSRSHRRSR 82

 Score = 53 (23.7 bits), Expect = 2.5e-39, Sum P(2) = 2.5e-39
 Identities = 18/37 (48%), Positives = 22/37 (59%)

Query:    51 RLSPARSGSAGSIDDKKYR-KSITRSRSGSPHRRSKR 86
             R +PARS S    D ++ R KS +RS S S  RRS R
Sbjct:    31 RHTPARSRSKE--DSRRSRSKSRSRSESRSRSRRSSR 65

 Score = 39 (18.8 bits), Expect = 7.3e-38, Sum P(2) = 7.3e-38
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query:    69 RKSITRSRSGSPHRRSK 85
             R+S + SRSGS H   K
Sbjct:    12 RESRSASRSGSAHGSGK 28


>UNIPROTKB|I3LBN9 [details] [associations]
            symbol:TRA2B "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0048026 "positive regulation of mRNA splicing, via
            spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=IEA] [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0000398 GO:GO:0048026 GO:GO:0000381
            GeneTree:ENSGT00700000104309 OMA:YDDREYY Ensembl:ENSSSCT00000025696
            Uniprot:I3LBN9
        Length = 280

 Score = 382 (139.5 bits), Expect = 2.8e-40, Sum P(2) = 2.8e-40
 Identities = 68/103 (66%), Positives = 82/103 (79%)

Query:   173 RENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRD 232
             R NP P+ CLGVFGLS+YTTE  +  +FSKYGP+  V +V D ++ RSRGF FVYFE+ D
Sbjct:   103 RANPDPNCCLGVFGLSLYTTESDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVD 162

Query:   233 DAAAAKDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTY 275
             DA  AK+   GME+DGR+IRVDFS+T+R HTPTPGIYMGRPTY
Sbjct:   163 DAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTY 205

 Score = 63 (27.2 bits), Expect = 2.8e-40, Sum P(2) = 2.8e-40
 Identities = 23/60 (38%), Positives = 32/60 (53%)

Query:    29 SHVSGRLLPKEPAQTSSDQCYYRL-SPARSGSAG-SIDDKKYRKSITRSRSGS-PHRRSK 85
             +H SG+     PA++ S +   R  S +RS S   S   +  R+  TRSRS S  HRRS+
Sbjct:    15 AHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYTRSRSRSRSHRRSR 74

 Score = 53 (23.7 bits), Expect = 3.2e-39, Sum P(2) = 3.2e-39
 Identities = 18/37 (48%), Positives = 22/37 (59%)

Query:    51 RLSPARSGSAGSIDDKKYR-KSITRSRSGSPHRRSKR 86
             R +PARS S    D ++ R KS +RS S S  RRS R
Sbjct:    23 RHTPARSRSKE--DSRRSRSKSRSRSESRSRSRRSSR 57


>UNIPROTKB|Q9DDU8 [details] [associations]
            symbol:TRA2B "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
            "regulation of alternative mRNA splicing, via spliceosome"
            evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0048026 "positive regulation of mRNA
            splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0000398 HSSP:Q9V535 GO:GO:0048026 GO:GO:0000381
            HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 KO:K12897
            OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 OMA:YDDREYY
            EMBL:AADN02024287 EMBL:AF282244 IPI:IPI00571265 RefSeq:NP_990009.1
            UniGene:Gga.4158 SMR:Q9DDU8 Ensembl:ENSGALT00000010555
            GeneID:395403 KEGG:gga:395403 InParanoid:Q9DDU8 NextBio:20815487
            Uniprot:Q9DDU8
        Length = 289

 Score = 379 (138.5 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
 Identities = 67/103 (65%), Positives = 83/103 (80%)

Query:   173 RENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRD 232
             R NP P+ CLGVFGLS+YTTE+ +  +FSKYGP+  V +V D ++ RSRGF FVYFE+ +
Sbjct:   111 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVE 170

Query:   233 DAAAAKDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTY 275
             DA  AK+   GME+DGR+IRVDFS+T+R HTPTPGIYMGRPTY
Sbjct:   171 DAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTY 213

 Score = 60 (26.2 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
 Identities = 23/60 (38%), Positives = 32/60 (53%)

Query:    29 SHVSGRLLPKEPAQTSSDQCYYRL-SPARSGSAG-SIDDKKYRKSITRSRSGS-PHRRSK 85
             +H SG+     PA++ S +   R  S +RS S   S   +  R+  TRSRS S  HRRS+
Sbjct:    23 AHGSGKSGRHTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYTRSRSRSRSHRRSR 82

 Score = 53 (23.7 bits), Expect = 6.5e-39, Sum P(2) = 6.5e-39
 Identities = 18/37 (48%), Positives = 22/37 (59%)

Query:    51 RLSPARSGSAGSIDDKKYR-KSITRSRSGSPHRRSKR 86
             R +PARS S    D ++ R KS +RS S S  RRS R
Sbjct:    31 RHTPARSRSKE--DSRRSRSKSRSRSESRSRSRRSSR 65

 Score = 39 (18.8 bits), Expect = 1.9e-37, Sum P(2) = 1.9e-37
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query:    69 RKSITRSRSGSPHRRSK 85
             R+S + SRSGS H   K
Sbjct:    12 RESRSASRSGSAHGSGK 28


>FB|FBgn0003742 [details] [associations]
            symbol:tra2 "transformer 2" species:7227 "Drosophila
            melanogaster" [GO:0007530 "sex determination" evidence=NAS]
            [GO:0003729 "mRNA binding" evidence=ISS;NAS] [GO:0006397 "mRNA
            processing" evidence=NAS;IMP] [GO:0000003 "reproduction"
            evidence=IMP] [GO:0030237 "female sex determination" evidence=IMP]
            [GO:0036002 "pre-mRNA binding" evidence=IDA] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=IC;IDA] [GO:0048024 "regulation
            of mRNA splicing, via spliceosome" evidence=IDA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=IMP;IDA]
            [GO:0042802 "identical protein binding" evidence=IPI] [GO:0007283
            "spermatogenesis" evidence=NAS] [GO:0019102 "male somatic sex
            determination" evidence=TAS] [GO:0019101 "female somatic sex
            determination" evidence=NAS;TAS] [GO:0000245 "spliceosomal complex
            assembly" evidence=NAS] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 EMBL:AE013599 GO:GO:0030154 GO:GO:0000166
            GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0007548
            GO:GO:0019102 GO:GO:0071011 GO:GO:0000245 GO:GO:0000381
            GeneTree:ENSGT00700000104309 GO:GO:0019101 KO:K12897
            eggNOG:NOG297815 EMBL:M23633 EMBL:X57484 EMBL:M30939 EMBL:M76381
            EMBL:AY058768 EMBL:J03155 PIR:A32373 PIR:D35846 PIR:S12003
            RefSeq:NP_476763.1 RefSeq:NP_476764.1 RefSeq:NP_476765.1
            RefSeq:NP_476766.1 RefSeq:NP_599107.1 RefSeq:NP_995834.1
            RefSeq:NP_995835.1 UniGene:Dm.4216 ProteinModelPortal:P19018
            SMR:P19018 DIP:DIP-17430N IntAct:P19018 MINT:MINT-277223
            STRING:P19018 PaxDb:P19018 PRIDE:P19018 EnsemblMetazoa:FBtr0089617
            EnsemblMetazoa:FBtr0089620 EnsemblMetazoa:FBtr0089621 GeneID:36619
            KEGG:dme:Dmel_CG10128 CTD:36619 FlyBase:FBgn0003742
            InParanoid:P19018 OMA:KDACTGM OrthoDB:EOG4TQJSF PhylomeDB:P19018
            GenomeRNAi:36619 NextBio:799520 Bgee:P19018 GermOnline:CG10128
            Uniprot:P19018
        Length = 264

 Score = 397 (144.8 bits), Expect = 4.0e-39, Sum P(2) = 4.0e-39
 Identities = 66/100 (66%), Positives = 89/100 (89%)

Query:   173 RENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRD 232
             RE+PQ SRC+GVFGL+  T++ ++  +F+KYGP+ER+++VIDA+T RSRGFCF+YFE   
Sbjct:    90 REHPQASRCIGVFGLNTNTSQHKVRELFNKYGPIERIQMVIDAQTQRSRGFCFIYFEKLS 149

Query:   233 DAAAAKDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGR 272
             DA AAKD+C+G+E+DGR+IRVDFS+TQRAHTPTPG+Y+GR
Sbjct:   150 DARAAKDSCSGIEVDGRRIRVDFSITQRAHTPTPGVYLGR 189

 Score = 37 (18.1 bits), Expect = 4.0e-39, Sum P(2) = 4.0e-39
 Identities = 14/52 (26%), Positives = 21/52 (40%)

Query:    28 RSHVSGRLLPKEPAQTSSDQCYYRLSPARSGSAGSIDDKKYRKSITRSRSGS 79
             R H S R   K  A +SS          R         +++++S +R RS S
Sbjct:    10 RLHCSARYKHKRSASSSSAGTTSSGHKDRRSDYDYCGSRRHQRSSSRRRSRS 61


>MGI|MGI:1933972 [details] [associations]
            symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0042802 "identical protein binding"
            evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 MGI:MGI:1933972 GO:GO:0005634
            GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000276232
            HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 ChiTaRS:TRA2A EMBL:BC057448
            IPI:IPI01008014 UniGene:Mm.196598 ProteinModelPortal:Q6PFR5
            SMR:Q6PFR5 IntAct:Q6PFR5 STRING:Q6PFR5 PhosphoSite:Q6PFR5
            PaxDb:Q6PFR5 PRIDE:Q6PFR5 UCSC:uc009bwm.1 InParanoid:Q6PFR5
            CleanEx:MM_TRA2A Genevestigator:Q6PFR5
            GermOnline:ENSMUSG00000029817 Uniprot:Q6PFR5
        Length = 281

 Score = 381 (139.2 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
 Identities = 67/103 (65%), Positives = 83/103 (80%)

Query:   173 RENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRD 232
             R NP P+ CLGVFGLS+YTTE+ +  +FS+YGP+  V VV D +TGRSRGF FVYFE  D
Sbjct:   110 RANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERID 169

Query:   233 DAAAAKDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTY 275
             D+  A +   GME+DGR+IRVD+S+T+RAHTPTPGIYMGRPT+
Sbjct:   170 DSKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTH 212

 Score = 49 (22.3 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query:    53 SPARSGSAGSIDDKKYRKSITRSRSGSPHRRSKR 86
             S +RSGS       K+ +S +RSRS S   RS+R
Sbjct:    30 SESRSGSRSPSRVSKHSESHSRSRSKS-RSRSRR 62

 Score = 46 (21.3 bits), Expect = 2.2e-38, Sum P(2) = 2.2e-38
 Identities = 21/71 (29%), Positives = 29/71 (40%)

Query:    15 SEPDGKVPVWYLCRSHVSGRLLPKEPAQTSSDQCYYRLSPARSGSAGSIDDKKYRKSITR 74
             S    K P     R     R   + P++ S     +  S +RS S        +R+  TR
Sbjct:    14 SRSQSKSPTGTPARVKSESRSGSRSPSRVSKHSESH--SRSRSKSRSRSRRHSHRR-YTR 70

Query:    75 SRSGSPHRRSK 85
             SRS S  RRS+
Sbjct:    71 SRSHSHRRRSR 81

 Score = 38 (18.4 bits), Expect = 1.5e-37, Sum P(2) = 1.5e-37
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query:    70 KSITRSRSGSPHRRSKRPQ 88
             KS +RS S SP R SK  +
Sbjct:    29 KSESRSGSRSPSRVSKHSE 47


>RGD|1562563 [details] [associations]
            symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=IEA;ISO] [GO:0042802 "identical protein binding"
            evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:1562563 GO:GO:0005634
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398
            eggNOG:COG0724 HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309
            HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 EMBL:BC161978 IPI:IPI00201580
            UniGene:Rn.203363 SMR:B1WC25 STRING:B1WC25
            Ensembl:ENSRNOT00000012325 UCSC:RGD:1562563 Genevestigator:B1WC25
            Uniprot:B1WC25
        Length = 282

 Score = 381 (139.2 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
 Identities = 67/103 (65%), Positives = 83/103 (80%)

Query:   173 RENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRD 232
             R NP P+ CLGVFGLS+YTTE+ +  +FS+YGP+  V VV D +TGRSRGF FVYFE  D
Sbjct:   110 RANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERID 169

Query:   233 DAAAAKDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTY 275
             D+  A +   GME+DGR+IRVD+S+T+RAHTPTPGIYMGRPT+
Sbjct:   170 DSKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTH 212

 Score = 49 (22.3 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query:    53 SPARSGSAGSIDDKKYRKSITRSRSGSPHRRSKR 86
             S +RSGS       K+ +S +RSRS S   RS+R
Sbjct:    30 SESRSGSRSPSRVSKHSESHSRSRSKS-RSRSRR 62

 Score = 46 (21.3 bits), Expect = 2.2e-38, Sum P(2) = 2.2e-38
 Identities = 21/71 (29%), Positives = 29/71 (40%)

Query:    15 SEPDGKVPVWYLCRSHVSGRLLPKEPAQTSSDQCYYRLSPARSGSAGSIDDKKYRKSITR 74
             S    K P     R     R   + P++ S     +  S +RS S        +R+  TR
Sbjct:    14 SRSQSKSPTGTPARVKSESRSGSRSPSRVSKHSESH--SRSRSKSRSRSRRHSHRR-YTR 70

Query:    75 SRSGSPHRRSK 85
             SRS S  RRS+
Sbjct:    71 SRSHSHRRRSR 81

 Score = 38 (18.4 bits), Expect = 1.5e-37, Sum P(2) = 1.5e-37
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query:    70 KSITRSRSGSPHRRSKRPQ 88
             KS +RS S SP R SK  +
Sbjct:    29 KSESRSGSRSPSRVSKHSE 47


>UNIPROTKB|Q2KJ71 [details] [associations]
            symbol:TRA2A "Transformer 2 alpha homolog (Drosophila)"
            species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GO:GO:0000398 eggNOG:COG0724 HOGENOM:HOG000276232
            GeneTree:ENSGT00700000104309 CTD:29896 HOVERGEN:HBG102125 KO:K12897
            OMA:DRYEEYD OrthoDB:EOG4BVRW2 EMBL:DAAA02010222 EMBL:BC105489
            IPI:IPI00695902 RefSeq:NP_001039845.1 UniGene:Bt.43563 SMR:Q2KJ71
            STRING:Q2KJ71 Ensembl:ENSBTAT00000016756 GeneID:534586
            KEGG:bta:534586 InParanoid:Q2KJ71 NextBio:20876456 Uniprot:Q2KJ71
        Length = 281

 Score = 381 (139.2 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
 Identities = 67/103 (65%), Positives = 83/103 (80%)

Query:   173 RENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRD 232
             R NP P+ CLGVFGLS+YTTE+ +  +FS+YGP+  V VV D +TGRSRGF FVYFE  D
Sbjct:   112 RANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERID 171

Query:   233 DAAAAKDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTY 275
             D+  A +   GME+DGR+IRVD+S+T+RAHTPTPGIYMGRPT+
Sbjct:   172 DSKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTH 214

 Score = 49 (22.3 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query:    53 SPARSGSAGSIDDKKYRKSITRSRSGSPHRRSKR 86
             S +RSGS       K+ +S +RSRS S   RS+R
Sbjct:    30 SESRSGSRSPSRVSKHSESHSRSRSKS-RSRSRR 62

 Score = 38 (18.4 bits), Expect = 1.5e-37, Sum P(2) = 1.5e-37
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query:    70 KSITRSRSGSPHRRSKRPQ 88
             KS +RS S SP R SK  +
Sbjct:    29 KSESRSGSRSPSRVSKHSE 47


>UNIPROTKB|E2R4B2 [details] [associations]
            symbol:TRA2A "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 OMA:DRYEEYD EMBL:AAEX03009371
            Ensembl:ENSCAFT00000004456 Uniprot:E2R4B2
        Length = 278

 Score = 381 (139.2 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
 Identities = 67/103 (65%), Positives = 83/103 (80%)

Query:   173 RENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRD 232
             R NP P+ CLGVFGLS+YTTE+ +  +FS+YGP+  V VV D +TGRSRGF FVYFE  D
Sbjct:   112 RANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERID 171

Query:   233 DAAAAKDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTY 275
             D+  A +   GME+DGR+IRVD+S+T+RAHTPTPGIYMGRPT+
Sbjct:   172 DSKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTH 214

 Score = 49 (22.3 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query:    53 SPARSGSAGSIDDKKYRKSITRSRSGSPHRRSKR 86
             S +RSGS       K+ +S +RSRS S   RS+R
Sbjct:    30 SESRSGSRSPSRVSKHSESHSRSRSKS-RSRSRR 62

 Score = 38 (18.4 bits), Expect = 1.5e-37, Sum P(2) = 1.5e-37
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query:    70 KSITRSRSGSPHRRSKRPQ 88
             KS +RS S SP R SK  +
Sbjct:    29 KSESRSGSRSPSRVSKHSE 47


>UNIPROTKB|Q13595 [details] [associations]
            symbol:TRA2A "Transformer-2 protein homolog alpha"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000398
            "mRNA splicing, via spliceosome" evidence=IDA] [GO:0005634
            "nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
            eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:U53209 EMBL:BC017094
            IPI:IPI00013891 IPI:IPI00220447 RefSeq:NP_037425.1
            UniGene:Hs.445652 ProteinModelPortal:Q13595 SMR:Q13595
            IntAct:Q13595 MINT:MINT-1683046 STRING:Q13595 PhosphoSite:Q13595
            DMDM:4033480 PaxDb:Q13595 PRIDE:Q13595 DNASU:29896
            Ensembl:ENST00000297071 GeneID:29896 KEGG:hsa:29896 UCSC:uc003swi.3
            CTD:29896 GeneCards:GC07M023544 HGNC:HGNC:16645 HPA:HPA054018
            MIM:602718 neXtProt:NX_Q13595 PharmGKB:PA164726707
            HOVERGEN:HBG102125 InParanoid:Q13595 KO:K12897 OMA:DRYEEYD
            OrthoDB:EOG4BVRW2 PhylomeDB:Q13595 ChiTaRS:TRA2A GenomeRNAi:29896
            NextBio:52459 ArrayExpress:Q13595 Bgee:Q13595 Genevestigator:Q13595
            GermOnline:ENSG00000164548 Uniprot:Q13595
        Length = 282

 Score = 381 (139.2 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
 Identities = 67/103 (65%), Positives = 83/103 (80%)

Query:   173 RENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRD 232
             R NP P+ CLGVFGLS+YTTE+ +  +FS+YGP+  V VV D +TGRSRGF FVYFE  D
Sbjct:   112 RANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERID 171

Query:   233 DAAAAKDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTY 275
             D+  A +   GME+DGR+IRVD+S+T+RAHTPTPGIYMGRPT+
Sbjct:   172 DSKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTH 214

 Score = 49 (22.3 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query:    53 SPARSGSAGSIDDKKYRKSITRSRSGSPHRRSKR 86
             S +RSGS       K+ +S +RSRS S   RS+R
Sbjct:    30 SESRSGSRSPSRVSKHSESHSRSRSKS-RSRSRR 62

 Score = 38 (18.4 bits), Expect = 1.5e-37, Sum P(2) = 1.5e-37
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query:    70 KSITRSRSGSPHRRSKRPQ 88
             KS +RS S SP R SK  +
Sbjct:    29 KSESRSGSRSPSRVSKHSE 47


>UNIPROTKB|Q06AA6 [details] [associations]
            symbol:TRA2A "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398 eggNOG:COG0724
            HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 CTD:29896
            HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
            EMBL:CU928731 EMBL:DQ972958 RefSeq:NP_001070691.1 UniGene:Ssc.14084
            SMR:Q06AA6 Ensembl:ENSSSCT00000016762 GeneID:768110 KEGG:ssc:768110
            Uniprot:Q06AA6
        Length = 279

 Score = 381 (139.2 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
 Identities = 67/103 (65%), Positives = 83/103 (80%)

Query:   173 RENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRD 232
             R NP P+ CLGVFGLS+YTTE+ +  +FS+YGP+  V VV D +TGRSRGF FVYFE  D
Sbjct:   112 RANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERID 171

Query:   233 DAAAAKDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTY 275
             D+  A +   GME+DGR+IRVD+S+T+RAHTPTPGIYMGRPT+
Sbjct:   172 DSKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTH 214

 Score = 49 (22.3 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query:    53 SPARSGSAGSIDDKKYRKSITRSRSGSPHRRSKR 86
             S +RSGS       K+ +S +RSRS S   RS+R
Sbjct:    30 SESRSGSRSPSRVSKHSESHSRSRSKS-RSRSRR 62

 Score = 38 (18.4 bits), Expect = 1.5e-37, Sum P(2) = 1.5e-37
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query:    70 KSITRSRSGSPHRRSKRPQ 88
             KS +RS S SP R SK  +
Sbjct:    29 KSESRSGSRSPSRVSKHSE 47


>UNIPROTKB|F1NPM7 [details] [associations]
            symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0000398 "mRNA splicing,
            via spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GO:GO:0000398 GeneTree:ENSGT00700000104309
            OMA:DRYEEYD EMBL:AADN02000941 EMBL:AADN02000942 IPI:IPI00590713
            Ensembl:ENSGALT00000017877 Uniprot:F1NPM7
        Length = 277

 Score = 379 (138.5 bits), Expect = 1.3e-38, Sum P(2) = 1.3e-38
 Identities = 67/103 (65%), Positives = 83/103 (80%)

Query:   173 RENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRD 232
             R NP P+ CLGVFGLS+YTTE+ +  +FS+YGP+  V VV D +TGRSRGF FVYFE  D
Sbjct:   114 RANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLTGVNVVYDQRTGRSRGFAFVYFERID 173

Query:   233 DAAAAKDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTY 275
             D+  A +   GME+DGR+IRVD+S+T+RAHTPTPGIYMGRPT+
Sbjct:   174 DSKEAMEHANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTH 216

 Score = 50 (22.7 bits), Expect = 1.3e-38, Sum P(2) = 1.3e-38
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query:    53 SPARSGSAGSIDDKKYRKSITRSRSGSPHRRSKR 86
             S +RSGS       K+ +S +RSRS S   RS+R
Sbjct:    30 SESRSGSRSPSRASKHSESHSRSRSKS-RSRSRR 62

 Score = 45 (20.9 bits), Expect = 4.5e-38, Sum P(2) = 4.5e-38
 Identities = 17/54 (31%), Positives = 25/54 (46%)

Query:    32 SGRLLPKEPAQTSSDQCYYRLSPARSGSAGSIDDKKYRKSITRSRSGSPHRRSK 85
             SG   P   ++ S      R S +RS S      ++Y +S + S S S  RRS+
Sbjct:    34 SGSRSPSRASKHSESHSRSR-SKSRSRSRRH-SHRRYTRSRSHSHSHSHRRRSR 85

 Score = 41 (19.5 bits), Expect = 1.2e-37, Sum P(2) = 1.2e-37
 Identities = 13/34 (38%), Positives = 16/34 (47%)

Query:    55 ARSGSAGSIDDKKYRKSITRSRSGSPHRRSKRPQ 88
             +RS S          KS +RS S SP R SK  +
Sbjct:    14 SRSQSKSPAGSPARVKSESRSGSRSPSRASKHSE 47


>ZFIN|ZDB-GENE-040426-1391 [details] [associations]
            symbol:tra2a "transformer-2 alpha" species:7955
            "Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-040426-1391 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
            GeneTree:ENSGT00700000104309 HSSP:P52298 CTD:29896
            HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
            EMBL:BX469899 EMBL:BC054632 IPI:IPI00510581 RefSeq:NP_956710.1
            UniGene:Dr.75585 SMR:Q7T2A0 STRING:Q7T2A0
            Ensembl:ENSDART00000008595 GeneID:393388 KEGG:dre:393388
            InParanoid:Q7T2A0 NextBio:20814435 Uniprot:Q7T2A0
        Length = 297

 Score = 376 (137.4 bits), Expect = 9.3e-38, Sum P(2) = 9.3e-38
 Identities = 67/105 (63%), Positives = 82/105 (78%)

Query:   171 DGRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFES 230
             D R NP P+ CLGVFGLS+YTTE+ +  +FS+YG +  V VV D +TGRSRGF FVYFE 
Sbjct:   126 DARANPDPNTCLGVFGLSLYTTERDLREVFSRYGSLAGVNVVYDQRTGRSRGFAFVYFEH 185

Query:   231 RDDAAAAKDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTY 275
              DDA  A +   GME+DGR+IRVD+S+T+R HTPTPGIYMGRPT+
Sbjct:   186 IDDAKEAMERANGMELDGRRIRVDYSITKRPHTPTPGIYMGRPTH 230

 Score = 45 (20.9 bits), Expect = 9.3e-38, Sum P(2) = 9.3e-38
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query:    68 YRKSITRSRSGSPHRRSKRPQVACGRDN 95
             +RK  +RSRS SP  R +R + A    N
Sbjct:    76 HRKK-SRSRSYSPESRRRRSRSASPNSN 102

 Score = 45 (20.9 bits), Expect = 9.3e-38, Sum P(2) = 9.3e-38
 Identities = 13/44 (29%), Positives = 21/44 (47%)

Query:    43 TSSDQCYYRLSPARSGSAGSIDDKKYRKSITRSRSGSPHRRSKR 86
             + +++  ++   +RS S          K  +RS S SP R SKR
Sbjct:     2 SDTEEQQFQRRESRSASKSDRGSPAQPKMESRSGSPSPSRASKR 45

 Score = 45 (20.9 bits), Expect = 9.3e-38, Sum P(2) = 9.3e-38
 Identities = 14/46 (30%), Positives = 20/46 (43%)

Query:    40 PAQTSSDQCYYRLSPARSGSAGSIDDKKYRKSITRSRSGSPHRRSK 85
             PAQ   +      SP+R+        +   KS +RSR  S  R S+
Sbjct:    25 PAQPKMESRSGSPSPSRASKRSDSRSRSRSKSRSRSRRHSNRRYSR 70


>ZFIN|ZDB-GENE-040426-1094 [details] [associations]
            symbol:tra2b "transformer 2 beta homolog
            (Drosophila)" species:7955 "Danio rerio" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-1094
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:Q9V535
            HOVERGEN:HBG107480 KO:K12897 CTD:6434 EMBL:BC049051 IPI:IPI00493400
            RefSeq:NP_957491.1 UniGene:Dr.9221 ProteinModelPortal:Q7ZUG9
            SMR:Q7ZUG9 STRING:Q7ZUG9 PRIDE:Q7ZUG9 GeneID:394172 KEGG:dre:394172
            InParanoid:Q7ZUG9 NextBio:20815117 ArrayExpress:Q7ZUG9 Bgee:Q7ZUG9
            Uniprot:Q7ZUG9
        Length = 278

 Score = 363 (132.8 bits), Expect = 5.1e-37, Sum P(2) = 5.1e-37
 Identities = 64/103 (62%), Positives = 82/103 (79%)

Query:   173 RENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRD 232
             R NP P+ CLGVFGLS+YTTE+ +  +FSKYGP+  V +V D ++ RSRGF  VYFE+R+
Sbjct:   116 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPLSDVCIVYDQQSRRSRGFALVYFENRE 175

Query:   233 DAAAAKDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTY 275
             D+  AK+   GME+DGR+IRVD+S+T+  HTPTPGIYMGRPTY
Sbjct:   176 DSKEAKERANGMELDGRRIRVDYSITKGPHTPTPGIYMGRPTY 218

 Score = 51 (23.0 bits), Expect = 5.1e-37, Sum P(2) = 5.1e-37
 Identities = 20/60 (33%), Positives = 30/60 (50%)

Query:    32 SG-RLLPKEPAQTSSDQCYYRLSPARSGSAGSIDDKKYRKSI-----TRSRSGSPHRRSK 85
             SG R   + PA  S ++ ++  S +RS S      + +R S      +RSRS S  RRS+
Sbjct:    28 SGSRSAERSPAH-SKERSHHSRSKSRSRSRSKTRSRSHRSSRRHYSRSRSRSYSRRRRSR 86

 Score = 41 (19.5 bits), Expect = 5.7e-36, Sum P(2) = 5.7e-36
 Identities = 16/56 (28%), Positives = 26/56 (46%)

Query:    28 RSHVSGRLLPKEPAQTSSDQCYYRLSPARSGSAGSIDDKKYRKSITRSRSGSPHRR 83
             RSH S R   +  +++ +    +R S      + S    + R+S +RS S   HRR
Sbjct:    43 RSHHS-RSKSRSRSRSKTRSRSHRSSRRHYSRSRSRSYSRRRRSRSRSYSSEYHRR 97


>UNIPROTKB|B4DQI6 [details] [associations]
            symbol:TRA2A "cDNA FLJ50614, highly similar to
            Transformer-2 protein homolog" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107480 IPI:IPI00220447
            UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A EMBL:AC023105
            EMBL:AK298815 SMR:B4DQI6 STRING:B4DQI6 Ensembl:ENST00000392502
            Uniprot:B4DQI6
        Length = 180

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 67/103 (65%), Positives = 83/103 (80%)

Query:   173 RENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRD 232
             R NP P+ CLGVFGLS+YTTE+ +  +FS+YGP+  V VV D +TGRSRGF FVYFE  D
Sbjct:    11 RANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERID 70

Query:   233 DAAAAKDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTY 275
             D+  A +   GME+DGR+IRVD+S+T+RAHTPTPGIYMGRPT+
Sbjct:    71 DSKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTH 113


>UNIPROTKB|B4DUA9 [details] [associations]
            symbol:TRA2A "Transformer-2 protein homolog alpha"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            HOVERGEN:HBG107480 UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A
            EMBL:AC023105 EMBL:AK300565 EMBL:AK300741 IPI:IPI01014274
            SMR:B4DUA9 STRING:B4DUA9 Ensembl:ENST00000538367 Uniprot:B4DUA9
        Length = 181

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 67/103 (65%), Positives = 83/103 (80%)

Query:   173 RENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRD 232
             R NP P+ CLGVFGLS+YTTE+ +  +FS+YGP+  V VV D +TGRSRGF FVYFE  D
Sbjct:    11 RANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERID 70

Query:   233 DAAAAKDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTY 275
             D+  A +   GME+DGR+IRVD+S+T+RAHTPTPGIYMGRPT+
Sbjct:    71 DSKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTH 113


>UNIPROTKB|E1C875 [details] [associations]
            symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:AADN02000941 EMBL:AADN02000942
            IPI:IPI00681985 ProteinModelPortal:E1C875
            Ensembl:ENSGALT00000031186 Uniprot:E1C875
        Length = 182

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 67/103 (65%), Positives = 83/103 (80%)

Query:   173 RENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRD 232
             R NP P+ CLGVFGLS+YTTE+ +  +FS+YGP+  V VV D +TGRSRGF FVYFE  D
Sbjct:    11 RANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLTGVNVVYDQRTGRSRGFAFVYFERID 70

Query:   233 DAAAAKDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTY 275
             D+  A +   GME+DGR+IRVD+S+T+RAHTPTPGIYMGRPT+
Sbjct:    71 DSKEAMEHANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTH 113


>UNIPROTKB|F1LVK5 [details] [associations]
            symbol:F1LVK5 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 IPI:IPI00569674 PRIDE:F1LVK5
            Ensembl:ENSRNOT00000007700 Uniprot:F1LVK5
        Length = 249

 Score = 324 (119.1 bits), Expect = 8.8e-32, Sum P(2) = 8.8e-32
 Identities = 61/101 (60%), Positives = 75/101 (74%)

Query:   174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDD 233
             ENP P+  LGVFGLS+Y TE+ +  +FSKYGPV  V +V D ++ +SR F FV FE+ DD
Sbjct:    81 ENPDPNYFLGVFGLSLYITERDLREVFSKYGPVADVSIVYDQQSSQSREFAFVCFENIDD 140

Query:   234 AAAAKDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPT 274
             A  AK+   GME+DG Q RVDFS+T+R HTPTPGIYM RPT
Sbjct:   141 AKEAKEHANGMELDGCQSRVDFSITKRLHTPTPGIYMERPT 181

 Score = 40 (19.1 bits), Expect = 8.8e-32, Sum P(2) = 8.8e-32
 Identities = 17/61 (27%), Positives = 29/61 (47%)

Query:    29 SHVSGRLLPKEPAQTS-SDQCYYRLSPARSGS-----AGSIDDKKYRKSITRSRSGSPHR 82
             +H S + +P  PA++   +   +  S +RS S     +     + Y +  TRSRS   +R
Sbjct:     1 AHGSRKSVPHTPARSRFKEDSRHPRSKSRSRSEFRPRSRRSSRRHYTRLRTRSRSYRDYR 60

Query:    83 R 83
             R
Sbjct:    61 R 61


>WB|WBGene00004705 [details] [associations]
            symbol:rsp-8 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040007
            "growth" evidence=IMP] [GO:0002119 "nematode larval development"
            evidence=IMP] [GO:0040010 "positive regulation of growth rate"
            evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0048477
            "oogenesis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
            [GO:0008406 "gonad development" evidence=IMP] [GO:0009792 "embryo
            development ending in birth or egg hatching" evidence=IMP]
            [GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
            [GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0000398 "mRNA splicing,
            via spliceosome" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009792 GO:GO:0002009 GO:GO:0040007 GO:GO:0040010
            GO:GO:0008406 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0040011 GO:GO:0048477 GO:GO:0003723 GO:GO:0040035
            GO:GO:0000398 GeneTree:ENSGT00700000104309 HSSP:Q14103 KO:K12897
            eggNOG:NOG297815 EMBL:Z92826 GeneID:176613 KEGG:cel:CELE_C18D11.4
            CTD:176613 PIR:T19389 RefSeq:NP_001255142.1
            ProteinModelPortal:Q9XTZ2 SMR:Q9XTZ2 DIP:DIP-26572N
            MINT:MINT-1084022 STRING:Q9XTZ2 PaxDb:Q9XTZ2
            EnsemblMetazoa:C18D11.4a.1 EnsemblMetazoa:C18D11.4a.2
            UCSC:C18D11.4.1 WormBase:C18D11.4a InParanoid:Q9XTZ2 OMA:RENPQPS
            NextBio:893300 Uniprot:Q9XTZ2
        Length = 309

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 53/99 (53%), Positives = 73/99 (73%)

Query:   173 RENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRD 232
             RENPQPS+CLGVF LS YTTE+ +  +F ++G + + ++V D  +G SRGF F+YF   +
Sbjct:    69 RENPQPSKCLGVFNLSSYTTEKDLRDVFGEFGEINKCDLVYDRPSGNSRGFGFIYFNLIE 128

Query:   233 DAAAAKDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMG 271
             DA AA+D     ++DG +IRVDFS+T+R H+PTPG YMG
Sbjct:   129 DATAARDKLCNTDLDGHKIRVDFSLTKRGHSPTPGQYMG 167


>DICTYBASE|DDB_G0278349 [details] [associations]
            symbol:tra2 "putative transformer-2 protein"
            species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
            vesicle" evidence=IDA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0000398 "mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0044351
            "macropinocytosis" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            dictyBase:DDB_G0278349 GO:GO:0005634 GO:GO:0045335 GO:GO:0000166
            GenomeReviews:CM000152_GR EMBL:AAFI02000023 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0000398 HSSP:P62995 KO:K12897 eggNOG:NOG297815
            RefSeq:XP_642304.1 ProteinModelPortal:Q54Y98 PRIDE:Q54Y98
            EnsemblProtists:DDB0233352 GeneID:8621510 KEGG:ddi:DDB_G0278349
            OMA:GIHPRLT Uniprot:Q54Y98
        Length = 326

 Score = 274 (101.5 bits), Expect = 3.1e-26, Sum P(2) = 3.1e-26
 Identities = 47/99 (47%), Positives = 70/99 (70%)

Query:   178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAA 237
             PS  LGVFGL+  T E+ +   FS++G ++ V++++D KTGRS+ F FVYFE+++DA  A
Sbjct:   111 PSNVLGVFGLAPQTEERDLKDEFSRFGKIDHVDLIMDRKTGRSKCFGFVYFENKEDAVRA 170

Query:   238 KDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTYE 276
             K+ C  +++ G+ IR DFS T++ H PTPG Y G P Y+
Sbjct:   171 KEECQDLQLHGKSIRTDFSATKKPHEPTPGKYFGNPRYD 209

 Score = 37 (18.1 bits), Expect = 3.1e-26, Sum P(2) = 3.1e-26
 Identities = 12/34 (35%), Positives = 15/34 (44%)

Query:    53 SPARSGSAGSIDDKKYRKSITRSRSGSPHRRSKR 86
             SP R GS          +  + +R GSP R  KR
Sbjct:    60 SPNRGGSPNRGGSPN--RGGSPNRGGSPSRDDKR 91


>UNIPROTKB|H7BXF3 [details] [associations]
            symbol:TRA2B "Transformer-2 protein homolog beta"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            HGNC:HGNC:10781 ChiTaRS:TRA2B EMBL:AC009247
            ProteinModelPortal:H7BXF3 PRIDE:H7BXF3 Ensembl:ENST00000259043
            Uniprot:H7BXF3
        Length = 127

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 47/71 (66%), Positives = 57/71 (80%)

Query:   205 PVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVTQRAHTP 264
             P+  V +V D ++ RSRGF FVYFE+ DDA  AK+   GME+DGR+IRVDFS+T+R HTP
Sbjct:     2 PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTP 61

Query:   265 TPGIYMGRPTY 275
             TPGIYMGRPTY
Sbjct:    62 TPGIYMGRPTY 72


>UNIPROTKB|Q3SZN4 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
            "mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
            of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
            evidence=IEA] [GO:0030371 "translation repressor activity"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
            GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
            GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
            HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
            GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
            IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
            Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
            InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
        Length = 213

 Score = 184 (69.8 bits), Expect = 5.5e-14, P = 5.5e-14
 Identities = 41/73 (56%), Positives = 47/73 (64%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L V GLS  T EQ +  +FSKYG +  V VV D +T RSRGF FV FE+ DDA  A  A 
Sbjct:     8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query:   242 TGMEIDGRQIRVD 254
              G  +DGRQIRVD
Sbjct:    68 NGKSVDGRQIRVD 80


>UNIPROTKB|E2R6G2 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
        Length = 172

 Score = 184 (69.8 bits), Expect = 5.5e-14, P = 5.5e-14
 Identities = 41/73 (56%), Positives = 47/73 (64%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L V GLS  T EQ +  +FSKYG +  V VV D +T RSRGF FV FE+ DDA  A  A 
Sbjct:     8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query:   242 TGMEIDGRQIRVD 254
              G  +DGRQIRVD
Sbjct:    68 NGKSVDGRQIRVD 80


>UNIPROTKB|F6XHA7 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
            OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
            EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
            Uniprot:F6XHA7
        Length = 185

 Score = 184 (69.8 bits), Expect = 5.5e-14, P = 5.5e-14
 Identities = 41/73 (56%), Positives = 47/73 (64%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L V GLS  T EQ +  +FSKYG +  V VV D +T RSRGF FV FE+ DDA  A  A 
Sbjct:     8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query:   242 TGMEIDGRQIRVD 254
              G  +DGRQIRVD
Sbjct:    68 NGKSVDGRQIRVD 80


>UNIPROTKB|K7EJV5 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
        Length = 105

 Score = 184 (69.8 bits), Expect = 5.5e-14, P = 5.5e-14
 Identities = 41/73 (56%), Positives = 47/73 (64%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L V GLS  T EQ +  +FSKYG +  V VV D +T RSRGF FV FE+ DDA  A  A 
Sbjct:     8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query:   242 TGMEIDGRQIRVD 254
              G  +DGRQIRVD
Sbjct:    68 NGKSVDGRQIRVD 80


>UNIPROTKB|K7EMY9 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
        Length = 159

 Score = 184 (69.8 bits), Expect = 5.5e-14, P = 5.5e-14
 Identities = 41/73 (56%), Positives = 47/73 (64%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L V GLS  T EQ +  +FSKYG +  V VV D +T RSRGF FV FE+ DDA  A  A 
Sbjct:     8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query:   242 TGMEIDGRQIRVD 254
              G  +DGRQIRVD
Sbjct:    68 NGKSVDGRQIRVD 80


>UNIPROTKB|K7ENX8 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
        Length = 89

 Score = 184 (69.8 bits), Expect = 5.5e-14, P = 5.5e-14
 Identities = 41/73 (56%), Positives = 47/73 (64%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L V GLS  T EQ +  +FSKYG +  V VV D +T RSRGF FV FE+ DDA  A  A 
Sbjct:     8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query:   242 TGMEIDGRQIRVD 254
              G  +DGRQIRVD
Sbjct:    68 NGKSVDGRQIRVD 80


>UNIPROTKB|K7EPM4 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
            Ensembl:ENST00000586773 Ensembl:ENST00000589235
            Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
        Length = 168

 Score = 184 (69.8 bits), Expect = 5.5e-14, P = 5.5e-14
 Identities = 41/73 (56%), Positives = 47/73 (64%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L V GLS  T EQ +  +FSKYG +  V VV D +T RSRGF FV FE+ DDA  A  A 
Sbjct:     8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query:   242 TGMEIDGRQIRVD 254
              G  +DGRQIRVD
Sbjct:    68 NGKSVDGRQIRVD 80


>UNIPROTKB|K7EQR7 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
        Length = 202

 Score = 184 (69.8 bits), Expect = 5.5e-14, P = 5.5e-14
 Identities = 41/73 (56%), Positives = 47/73 (64%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L V GLS  T EQ +  +FSKYG +  V VV D +T RSRGF FV FE+ DDA  A  A 
Sbjct:     8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query:   242 TGMEIDGRQIRVD 254
              G  +DGRQIRVD
Sbjct:    68 NGKSVDGRQIRVD 80


>UNIPROTKB|K7ER40 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
        Length = 174

 Score = 184 (69.8 bits), Expect = 5.5e-14, P = 5.5e-14
 Identities = 41/73 (56%), Positives = 47/73 (64%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L V GLS  T EQ +  +FSKYG +  V VV D +T RSRGF FV FE+ DDA  A  A 
Sbjct:     8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query:   242 TGMEIDGRQIRVD 254
              G  +DGRQIRVD
Sbjct:    68 NGKSVDGRQIRVD 80


>UNIPROTKB|Q14011 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
            evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
            [GO:0030371 "translation repressor activity" evidence=ISS]
            [GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
            "response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
            granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
            3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
            translation" evidence=IDA] [GO:0009409 "response to cold"
            evidence=TAS] [GO:0017148 "negative regulation of translation"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
            GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
            GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
            EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
            RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
            PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
            MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
            REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
            DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
            UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
            neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
            InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
            ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
            ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
            Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
        Length = 172

 Score = 184 (69.8 bits), Expect = 5.5e-14, P = 5.5e-14
 Identities = 41/73 (56%), Positives = 47/73 (64%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L V GLS  T EQ +  +FSKYG +  V VV D +T RSRGF FV FE+ DDA  A  A 
Sbjct:     8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query:   242 TGMEIDGRQIRVD 254
              G  +DGRQIRVD
Sbjct:    68 NGKSVDGRQIRVD 80


>UNIPROTKB|F1S6R1 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
            "mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
            of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
            evidence=IEA] [GO:0030371 "translation repressor activity"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
            GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
            GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
            GeneTree:ENSGT00700000104309 EMBL:CU929580
            Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
        Length = 172

 Score = 184 (69.8 bits), Expect = 5.5e-14, P = 5.5e-14
 Identities = 41/73 (56%), Positives = 47/73 (64%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L V GLS  T EQ +  +FSKYG +  V VV D +T RSRGF FV FE+ DDA  A  A 
Sbjct:     8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query:   242 TGMEIDGRQIRVD 254
              G  +DGRQIRVD
Sbjct:    68 NGKSVDGRQIRVD 80


>UNIPROTKB|Q5RF83 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
            evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
            evidence=ISS] [GO:0017148 "negative regulation of translation"
            evidence=ISS] [GO:0030371 "translation repressor activity"
            evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
            [GO:0045727 "positive regulation of translation" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
            rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
            GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
            GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
            RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
            SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
            Uniprot:Q5RF83
        Length = 172

 Score = 184 (69.8 bits), Expect = 5.5e-14, P = 5.5e-14
 Identities = 41/73 (56%), Positives = 47/73 (64%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L V GLS  T EQ +  +FSKYG +  V VV D +T RSRGF FV FE+ DDA  A  A 
Sbjct:     8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query:   242 TGMEIDGRQIRVD 254
              G  +DGRQIRVD
Sbjct:    68 NGKSVDGRQIRVD 80


>UNIPROTKB|H9KZV5 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
            "mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0030371 "translation repressor activity"
            evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
            [GO:0045727 "positive regulation of translation" evidence=IEA]
            [GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
            rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
            GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
            Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
        Length = 190

 Score = 183 (69.5 bits), Expect = 7.1e-14, P = 7.1e-14
 Identities = 40/71 (56%), Positives = 46/71 (64%)

Query:   184 VFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTG 243
             V GLS  T EQ +  +FSKYG +  V VV D +T RSRGF FV FE+ DDA  A  A  G
Sbjct:    10 VGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNG 69

Query:   244 MEIDGRQIRVD 254
               +DGRQIRVD
Sbjct:    70 KSVDGRQIRVD 80


>UNIPROTKB|H9L0U4 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
            Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
        Length = 167

 Score = 183 (69.5 bits), Expect = 7.1e-14, P = 7.1e-14
 Identities = 40/71 (56%), Positives = 46/71 (64%)

Query:   184 VFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTG 243
             V GLS  T EQ +  +FSKYG +  V VV D +T RSRGF FV FE+ DDA  A  A  G
Sbjct:    10 VGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNG 69

Query:   244 MEIDGRQIRVD 254
               +DGRQIRVD
Sbjct:    70 KSVDGRQIRVD 80


>UNIPROTKB|H9L3B3 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
            Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
        Length = 172

 Score = 183 (69.5 bits), Expect = 7.1e-14, P = 7.1e-14
 Identities = 40/71 (56%), Positives = 46/71 (64%)

Query:   184 VFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTG 243
             V GLS  T EQ +  +FSKYG +  V VV D +T RSRGF FV FE+ DDA  A  A  G
Sbjct:    10 VGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNG 69

Query:   244 MEIDGRQIRVD 254
               +DGRQIRVD
Sbjct:    70 KSVDGRQIRVD 80


>UNIPROTKB|P60826 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
            binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
            evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
            evidence=ISS] [GO:0017148 "negative regulation of translation"
            evidence=ISS] [GO:0030371 "translation repressor activity"
            evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
            [GO:0045727 "positive regulation of translation" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
            rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
            GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
            GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
            ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
            CTD:1153 Uniprot:P60826
        Length = 172

 Score = 183 (69.5 bits), Expect = 7.1e-14, P = 7.1e-14
 Identities = 41/73 (56%), Positives = 47/73 (64%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L V GLS  T EQ +  +FSKYG +  V VV D +T RSRGF FV FE+ DDA  A  A 
Sbjct:     8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query:   242 TGMEIDGRQIRVD 254
              G  +DGRQIRVD
Sbjct:    68 NGKSVDGRQIRVD 80


>MGI|MGI:893588 [details] [associations]
            symbol:Cirbp "cold inducible RNA binding protein"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
            binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
            [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
            stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
            [GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
            "negative regulation of translation" evidence=IDA] [GO:0030371
            "translation repressor activity" evidence=IDA] [GO:0034063 "stress
            granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
            translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
            evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
            GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
            GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
            OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
            EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
            UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
            PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
            Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
            UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
            NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
            GermOnline:ENSMUSG00000045193 Uniprot:P60824
        Length = 172

 Score = 183 (69.5 bits), Expect = 7.1e-14, P = 7.1e-14
 Identities = 41/73 (56%), Positives = 47/73 (64%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L V GLS  T EQ +  +FSKYG +  V VV D +T RSRGF FV FE+ DDA  A  A 
Sbjct:     8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query:   242 TGMEIDGRQIRVD 254
              G  +DGRQIRVD
Sbjct:    68 NGKSVDGRQIRVD 80


>RGD|620756 [details] [associations]
            symbol:Cirbp "cold inducible RNA binding protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
            "nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
            cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
            [GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
            [GO:0017148 "negative regulation of translation" evidence=ISO]
            [GO:0030371 "translation repressor activity" evidence=ISO;ISS]
            [GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
            "positive regulation of translation" evidence=ISO;ISS] [GO:0048255
            "mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
            binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
            GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
            HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
            OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
            IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
            SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
            Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
            Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
        Length = 172

 Score = 183 (69.5 bits), Expect = 7.1e-14, P = 7.1e-14
 Identities = 41/73 (56%), Positives = 47/73 (64%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L V GLS  T EQ +  +FSKYG +  V VV D +T RSRGF FV FE+ DDA  A  A 
Sbjct:     8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query:   242 TGMEIDGRQIRVD 254
              G  +DGRQIRVD
Sbjct:    68 NGKSVDGRQIRVD 80


>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
            symbol:cirbp "cold inducible RNA binding protein"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
            to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
            EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
            Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
            Uniprot:F1R6L3
        Length = 224

 Score = 183 (69.5 bits), Expect = 7.1e-14, P = 7.1e-14
 Identities = 38/73 (52%), Positives = 49/73 (67%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L + GLS  TTEQ +   FSKYG + +V+V+ D +T RSRGF FV FE+ +DA  A  A 
Sbjct:    25 LFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAAM 84

Query:   242 TGMEIDGRQIRVD 254
              G ++DGR IRVD
Sbjct:    85 NGKQVDGRMIRVD 97


>UNIPROTKB|Q28IQ9 [details] [associations]
            symbol:cirbp "Cold-inducible RNA-binding protein"
            species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
            binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
            [GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
            development" evidence=ISS] [GO:0016477 "cell migration"
            evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
            [GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
            regulation of translation" evidence=ISS] [GO:0048255 "mRNA
            stabilization" evidence=ISS] [GO:0048793 "pronephros development"
            evidence=ISS] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
            [GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
            GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
            GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
            GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
            RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
            SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
            Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
        Length = 166

 Score = 177 (67.4 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 39/73 (53%), Positives = 48/73 (65%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L V GL+  TTE+ +  +FSKYG V  V VV D ++ RSRGF FV FE+ +DA  A  A 
Sbjct:     8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAM 67

Query:   242 TGMEIDGRQIRVD 254
              G  +DGRQIRVD
Sbjct:    68 NGKSVDGRQIRVD 80


>UNIPROTKB|Q9DED4 [details] [associations]
            symbol:cirbp-b "Cold-inducible RNA-binding protein B"
            species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
            evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
            "gastrulation" evidence=IMP] [GO:0009409 "response to cold"
            evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
            [GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
            binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
            [GO:0045727 "positive regulation of translation" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
            "pronephros development" evidence=ISS] [GO:0060212 "negative
            regulation of nuclear-transcribed mRNA poly(A) tail shortening"
            evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
            GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
            EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
            HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
            PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
            Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
        Length = 166

 Score = 177 (67.4 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 38/73 (52%), Positives = 47/73 (64%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L + GL+  T E+ +  +FSKYG +  V VV D +T RSRGF FV FE+ DDA  A  A 
Sbjct:     7 LFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAM 66

Query:   242 TGMEIDGRQIRVD 254
              G  +DGRQIRVD
Sbjct:    67 NGKAVDGRQIRVD 79


>UNIPROTKB|B4E2X2 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
            UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
            OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
            SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
            Uniprot:B4E2X2
        Length = 263

 Score = 184 (69.8 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 41/73 (56%), Positives = 47/73 (64%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L V GLS  T EQ +  +FSKYG +  V VV D +T RSRGF FV FE+ DDA  A  A 
Sbjct:     8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query:   242 TGMEIDGRQIRVD 254
              G  +DGRQIRVD
Sbjct:    68 NGKSVDGRQIRVD 80


>UNIPROTKB|Q9PTX2 [details] [associations]
            symbol:cirbp "Cold-inducible RNA-binding protein"
            species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
            evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
            evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
            "response to cold" evidence=ISS] [GO:0009790 "embryo development"
            evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
            [GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
            "neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
            evidence=IEP] [GO:0045727 "positive regulation of translation"
            evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
            [GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
            "negative regulation of nuclear-transcribed mRNA poly(A) tail
            shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
            GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
            GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
            SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
        Length = 164

 Score = 172 (65.6 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 39/73 (53%), Positives = 47/73 (64%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L V GLS  T EQ +  +FSKYG ++ V VV D +T RSRGF FV FE+ +DA  A    
Sbjct:     8 LFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGM 67

Query:   242 TGMEIDGRQIRVD 254
              G  +DGRQIRVD
Sbjct:    68 NGKTVDGRQIRVD 80


>ZFIN|ZDB-GENE-050417-329 [details] [associations]
            symbol:zgc:112425 "zgc:112425" species:7955 "Danio
            rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
            HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
            OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
            EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
            UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
            Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
            KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
        Length = 185

 Score = 171 (65.3 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 37/73 (50%), Positives = 45/73 (61%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L + GLS  TTEQ +   FSKYG +  V V  + +T RSRGF FV FE+ DDA  A +  
Sbjct:     7 LFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEGM 66

Query:   242 TGMEIDGRQIRVD 254
              G  +DGR IRVD
Sbjct:    67 NGKSVDGRTIRVD 79


>UNIPROTKB|D6W5Y5 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
            UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
            HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
            PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
            Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
            Bgee:D6W5Y5 Uniprot:D6W5Y5
        Length = 297

 Score = 184 (69.8 bits), Expect = 2.6e-12, P = 2.6e-12
 Identities = 41/73 (56%), Positives = 47/73 (64%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L V GLS  T EQ +  +FSKYG +  V VV D +T RSRGF FV FE+ DDA  A  A 
Sbjct:     8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query:   242 TGMEIDGRQIRVD 254
              G  +DGRQIRVD
Sbjct:    68 NGKSVDGRQIRVD 80


>UNIPROTKB|O93235 [details] [associations]
            symbol:cirbp-a "Cold-inducible RNA-binding protein A"
            species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
            evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
            evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
            "response to cold" evidence=IEP] [GO:0009411 "response to UV"
            evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
            [GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
            "cell migration" evidence=IMP] [GO:0017148 "negative regulation of
            translation" evidence=ISS] [GO:0019899 "enzyme binding"
            evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
            "translation repressor activity" evidence=ISS] [GO:0034063 "stress
            granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
            translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
            evidence=ISS] [GO:0048793 "pronephros development"
            evidence=IEP;IMP] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
            [GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
            field specification" evidence=IMP] [GO:0005840 "ribosome"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
            GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
            GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
            GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
            GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
            EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
            ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
            CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
            GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
        Length = 166

 Score = 165 (63.1 bits), Expect = 7.5e-12, P = 7.5e-12
 Identities = 37/73 (50%), Positives = 45/73 (61%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L + GL+  T E  +   F+KYG +  V VV D +T RSRGF FV FE+ DDA  A  A 
Sbjct:     7 LFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAM 66

Query:   242 TGMEIDGRQIRVD 254
              G  +DGRQIRVD
Sbjct:    67 NGKSVDGRQIRVD 79


>UNIPROTKB|E2R228 [details] [associations]
            symbol:E2R228 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:AAEX03026350
            Ensembl:ENSCAFT00000025375 OMA:SDVEYRC Uniprot:E2R228
        Length = 149

 Score = 163 (62.4 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 33/69 (47%), Positives = 43/69 (62%)

Query:   186 GLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGME 245
             GL+  T EQ +   FS +GP+  V VV D +T RSRGFCF+ F + + A+ A     G  
Sbjct:    12 GLNFNTNEQALEDHFSSFGPISEVVVVKDRETQRSRGFCFITFTNPEHASDAMRPMNGKS 71

Query:   246 IDGRQIRVD 254
             +DGRQIRVD
Sbjct:    72 LDGRQIRVD 80


>ASPGD|ASPL0000040642 [details] [associations]
            symbol:AN2989 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
            GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
            ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
            Uniprot:C8VIY5
        Length = 128

 Score = 159 (61.0 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 40/94 (42%), Positives = 51/94 (54%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L + GL+ +TT+  +   FS+YG +E   VV D  T RSRGF FV F S  +A AA  A 
Sbjct:     4 LFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMGAM 63

Query:   242 TGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTY 275
                E DGR IRVD   ++R      G + GR  Y
Sbjct:    64 NNQEFDGRIIRVD-KASERPAARNGG-FQGRGGY 95


>MGI|MGI:1099460 [details] [associations]
            symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
            musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
            evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
            [GO:0006950 "response to stress" evidence=IEA] [GO:0009409
            "response to cold" evidence=IDA] [GO:0015934 "large ribosomal
            subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
            [GO:0035196 "production of miRNAs involved in gene silencing by
            miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
            [GO:0043023 "ribosomal large subunit binding" evidence=IPI]
            [GO:0045727 "positive regulation of translation" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
            GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
            HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
            GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
            EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
            RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
            ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
            PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
            PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
            Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
            NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
            GermOnline:ENSMUSG00000031167 Uniprot:O89086
        Length = 153

 Score = 159 (61.0 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 39/91 (42%), Positives = 52/91 (57%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L V GL+  T EQ +   FS +GP+  V VV D +T RSRGF F+ F + + A+ A  A 
Sbjct:     8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67

Query:   242 TGMEIDGRQIRVDFSVTQRAHTPTPGIYMGR 272
              G  +DGRQIRVD +  + A     G + GR
Sbjct:    68 NGESLDGRQIRVDHA-GKSARGSRGGAFGGR 97


>ASPGD|ASPL0000005578 [details] [associations]
            symbol:AN6676 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:BN001301 GO:GO:0030529 EMBL:AACD01000111 eggNOG:NOG297815
            OMA:GIHPRLT OrthoDB:EOG4KPXM5 RefSeq:XP_664280.1
            ProteinModelPortal:Q5AYF4 STRING:Q5AYF4
            EnsemblFungi:CADANIAT00007461 GeneID:2870465 KEGG:ani:AN6676.2
            HOGENOM:HOG000180680 Uniprot:Q5AYF4
        Length = 307

 Score = 175 (66.7 bits), Expect = 3.9e-11, P = 3.9e-11
 Identities = 38/95 (40%), Positives = 52/95 (54%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L V G+    TE  I+ +F KYG VE   +++D  T  SRGF FV   + + A AAK+  
Sbjct:    69 LFVTGIHPRLTESDISRLFEKYGDVESCSIMVDPHTKESRGFGFVNMVTAEQADAAKEGL 128

Query:   242 TGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTYE 276
              G  I+GR + ++ +   R  TPTPG Y G P  E
Sbjct:   129 QGEVIEGRTLSIEKARRSRPRTPTPGKYFGPPKRE 163


>UNIPROTKB|P98179 [details] [associations]
            symbol:RBM3 "Putative RNA-binding protein 3" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
            evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
            [GO:0035196 "production of miRNAs involved in gene silencing by
            miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
            "dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
            evidence=ISS] [GO:0045727 "positive regulation of translation"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
            "large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
            processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
            GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
            HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
            GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
            RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
            SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
            PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
            PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
            Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
            CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
            MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
            KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
            NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
            Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
        Length = 157

 Score = 158 (60.7 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 35/73 (47%), Positives = 45/73 (61%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L V GL+  T EQ +   FS +GP+  V VV D +T RSRGF F+ F + + A+ A  A 
Sbjct:     8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67

Query:   242 TGMEIDGRQIRVD 254
              G  +DGRQIRVD
Sbjct:    68 NGESLDGRQIRVD 80


>UNIPROTKB|I3L5X7 [details] [associations]
            symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
            EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
            Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
            Uniprot:I3L5X7
        Length = 156

 Score = 156 (60.0 bits), Expect = 7.6e-11, P = 7.6e-11
 Identities = 35/73 (47%), Positives = 45/73 (61%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L V GL+  T EQ +   FS +GP+  V VV D +T RSRGF F+ F + + A+ A  A 
Sbjct:     8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAM 67

Query:   242 TGMEIDGRQIRVD 254
              G  +DGRQIRVD
Sbjct:    68 NGESLDGRQIRVD 80


>UNIPROTKB|G3V6P6 [details] [associations]
            symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
            "translation" evidence=IEA] [GO:0009409 "response to cold"
            evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
            silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
            subunit binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
            RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
            NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
            Uniprot:G3V6P6
        Length = 156

 Score = 156 (60.0 bits), Expect = 7.6e-11, P = 7.6e-11
 Identities = 35/73 (47%), Positives = 45/73 (61%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L V GL+  T EQ +   FS +GP+  V VV D +T RSRGF F+ F + + A+ A  A 
Sbjct:     8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67

Query:   242 TGMEIDGRQIRVD 254
              G  +DGRQIRVD
Sbjct:    68 NGESLDGRQIRVD 80


>TAIR|locus:2077427 [details] [associations]
            symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
            HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
            EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
            ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
            GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
            OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
            Genevestigator:Q9SFB4 Uniprot:Q9SFB4
        Length = 143

 Score = 154 (59.3 bits), Expect = 1.3e-10, P = 1.3e-10
 Identities = 37/100 (37%), Positives = 52/100 (52%)

Query:   178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAA 237
             PS  L + GLS    EQ +   FS +G V  V +  D  +GRSRGF FV F    DA +A
Sbjct:    39 PSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSA 98

Query:   238 KDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTYEQ 277
             KDA  G  + GR +R+ F++ +    P     +G+   E+
Sbjct:    99 KDAMDGKGLLGRPLRISFALERVRGGPVVVPRLGKSKRER 138


>UNIPROTKB|F6RBQ9 [details] [associations]
            symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
            [GO:0035196 "production of miRNAs involved in gene silencing by
            miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
            [GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
            OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
            Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
        Length = 160

 Score = 152 (58.6 bits), Expect = 2.1e-10, P = 2.1e-10
 Identities = 34/73 (46%), Positives = 45/73 (61%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L V GL+  T E+ +   FS +GP+  V VV D +T RSRGF F+ F + + A+ A  A 
Sbjct:     8 LFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAM 67

Query:   242 TGMEIDGRQIRVD 254
              G  +DGRQIRVD
Sbjct:    68 NGESLDGRQIRVD 80


>RGD|620145 [details] [associations]
            symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
            evidence=ISO] [GO:0006417 "regulation of translation"
            evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
            [GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
            ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
            evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
            silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
            subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
            translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
            eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
            OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
            EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
            RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
            MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
            KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
            Genevestigator:Q925G0 Uniprot:Q925G0
        Length = 155

 Score = 152 (58.6 bits), Expect = 2.1e-10, P = 2.1e-10
 Identities = 34/73 (46%), Positives = 44/73 (60%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L V GL+  T EQ +   FS +GP+  V VV D +T RSRGF F+ F + + A+    A 
Sbjct:     8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAM 67

Query:   242 TGMEIDGRQIRVD 254
              G  +DGRQIRVD
Sbjct:    68 NGESLDGRQIRVD 80


>UNIPROTKB|F1P133 [details] [associations]
            symbol:F1P133 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00600000084414 OMA:YMEGCAP EMBL:AADN02013152
            IPI:IPI00575891 ProteinModelPortal:F1P133
            Ensembl:ENSGALT00000006408 Uniprot:F1P133
        Length = 166

 Score = 150 (57.9 bits), Expect = 3.5e-10, P = 3.5e-10
 Identities = 31/75 (41%), Positives = 43/75 (57%)

Query:   186 GLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGME 245
             GL    TE  +  +FS+YG V  + +V D KTG+S+GFCF+ +E +     A D   G++
Sbjct:    42 GLPYQLTEGDVICVFSQYGEVVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIK 101

Query:   246 IDGRQIRVDFSVTQR 260
             I GR IRVD     R
Sbjct:   102 IKGRTIRVDHVANYR 116


>UNIPROTKB|E2R771 [details] [associations]
            symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
            EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
            Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
            Uniprot:E2R771
        Length = 162

 Score = 150 (57.9 bits), Expect = 3.5e-10, P = 3.5e-10
 Identities = 34/73 (46%), Positives = 43/73 (58%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L V GL+  T EQ +   F  +GP+  V VV D +T RSRGF F+ F   + A+ A  A 
Sbjct:     8 LFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMRAM 67

Query:   242 TGMEIDGRQIRVD 254
              G  +DGRQIRVD
Sbjct:    68 NGESLDGRQIRVD 80


>UNIPROTKB|Q43472 [details] [associations]
            symbol:blt801 "Glycine-rich RNA-binding protein blt801"
            species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
            binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
            [GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
            to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
            EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
            Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
        Length = 161

 Score = 150 (57.9 bits), Expect = 3.5e-10, P = 3.5e-10
 Identities = 34/82 (41%), Positives = 50/82 (60%)

Query:   180 RCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKD 239
             RC  V GL   T +Q + + FSKYG V   +++ D +TGRSRGF FV F S +    A +
Sbjct:     7 RCF-VGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIE 65

Query:   240 ACTGMEIDGRQIRVDFSVTQRA 261
             A  G ++DGR I V+ + ++R+
Sbjct:    66 AMNGQDLDGRNITVNEAQSRRS 87


>TAIR|locus:2076096 [details] [associations]
            symbol:GRP4 "glycine-rich RNA-binding protein 4"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
            [GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
            "double-stranded DNA binding" evidence=IDA] [GO:0003697
            "single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
            to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
            evidence=IEP] [GO:0009414 "response to water deprivation"
            evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
            [GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
            cell wall organization" evidence=RCA] [GO:0042545 "cell wall
            modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
            EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
            eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
            ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
            IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
            UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
            PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
            EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
            GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
            PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
        Length = 136

 Score = 150 (57.9 bits), Expect = 3.5e-10, P = 3.5e-10
 Identities = 35/83 (42%), Positives = 47/83 (56%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L V GLS  T +  +   F+ +G V    V+ D +TGRSRGF FV F   D A  A    
Sbjct:    37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96

Query:   242 TGMEIDGRQIRVDFSVTQRAHTP 264
              G E++GRQIRV+ + T+R+  P
Sbjct:    97 DGKELNGRQIRVNLA-TERSSAP 118


>UNIPROTKB|K7ELT6 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000590347 Ensembl:ENST00000591055
            Uniprot:K7ELT6
        Length = 135

 Score = 147 (56.8 bits), Expect = 7.5e-10, P = 7.5e-10
 Identities = 41/86 (47%), Positives = 52/86 (60%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L V GLS  T EQ +  +FSKYG +  V VV D +T RSRGF FV FE+ DDA   KDA 
Sbjct:     8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA---KDAM 64

Query:   242 TGMEIDGR-QIRV--DFSVTQRAHTP 264
               M ++G+ +IRV     V++  H P
Sbjct:    65 --MAMNGKVRIRVLSRSPVSRMGHPP 88


>TAIR|locus:2077137 [details] [associations]
            symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
            HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
            IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
            ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
            GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
            OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
            Genevestigator:Q9LZT1 Uniprot:Q9LZT1
        Length = 102

 Score = 147 (56.8 bits), Expect = 7.5e-10, P = 7.5e-10
 Identities = 33/87 (37%), Positives = 50/87 (57%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L V  LS YTT+Q +  +FS +G ++   ++ D++T R +GF F+ F+S DDA  A  + 
Sbjct:     9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68

Query:   242 TGMEIDGRQIRVDFSVTQRAHTPTPGI 268
              G  +DGR I V+  V + A     GI
Sbjct:    69 DGKIVDGRLIFVE--VAKNAEEVRAGI 93


>TAIR|locus:2160752 [details] [associations]
            symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
            HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
            IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
            ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
            PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
            KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
            PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
            Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
        Length = 146

 Score = 145 (56.1 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 32/80 (40%), Positives = 49/80 (61%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L + GLS  TTEQ ++  FSK G V   ++V+D  + RS+GF FV F S D+A  A    
Sbjct:    36 LFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEF 95

Query:   242 TGMEIDGRQIRVDFSVTQRA 261
              G +++GR I VD++  +++
Sbjct:    96 NGQQLNGRTIFVDYAKAKQS 115


>POMBASE|SPAC25G10.01 [details] [associations]
            symbol:SPAC25G10.01 "RNA-binding protein" species:4896
            "Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            PomBase:SPAC25G10.01 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG297815 PIR:T38372
            RefSeq:XP_001713104.1 ProteinModelPortal:Q10422
            EnsemblFungi:SPAC25G10.01.1 GeneID:3361412 KEGG:spo:SPAC25G10.01
            OMA:ERAVEAN OrthoDB:EOG4KPXM5 NextBio:20811463 Uniprot:Q10422
        Length = 297

 Score = 161 (61.7 bits), Expect = 1.6e-09, P = 1.6e-09
 Identities = 39/111 (35%), Positives = 60/111 (54%)

Query:   176 PQPSRCLG----VFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESR 231
             P+ S  LG    V G++    E ++  IFSK+G V  V ++ +  T  SRGF F+ F + 
Sbjct:    93 PEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTV 152

Query:   232 DDAAAAKDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTYEQLNNTQ 282
             ++A +A D     E  GR + V  +   R H+PTPG YMG   Y++  N++
Sbjct:   153 EEATSAIDNLNSQEFYGRVLNVQKAKRSRPHSPTPGKYMG---YDRRRNSR 200


>UNIPROTKB|K7ELV6 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
        Length = 70

 Score = 141 (54.7 bits), Expect = 3.4e-09, P = 3.4e-09
 Identities = 33/62 (53%), Positives = 38/62 (61%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L V GLS  T EQ +  +FSKYG +  V VV D +T RSRGF FV FE+ DDA  A  A 
Sbjct:     8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query:   242 TG 243
              G
Sbjct:    68 NG 69


>UNIPROTKB|I3LQ36 [details] [associations]
            symbol:I3LQ36 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:CU210877
            Ensembl:ENSSSCT00000005974 Uniprot:I3LQ36
        Length = 161

 Score = 141 (54.7 bits), Expect = 3.4e-09, P = 3.4e-09
 Identities = 33/73 (45%), Positives = 44/73 (60%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L V GL+  T EQ +   FS +GP+  V VV D +T RS+GF F+ F + + A+ A  A 
Sbjct:     8 LFVGGLNFNTYEQALEDHFSSFGPIFEVVVVKDWETRRSQGFGFITFTNPEHASNAMRAT 67

Query:   242 TGMEIDGRQIRVD 254
              G  +DGRQI VD
Sbjct:    68 NGESLDGRQIHVD 80


>UNIPROTKB|C1BY64 [details] [associations]
            symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
            species:8010 "Esox lucius" [GO:0000340 "RNA 7-methylguanosine cap
            binding" evidence=ISS] [GO:0006408 "snRNA export from nucleus"
            evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS] [GO:0045292
            "mRNA cis splicing, via spliceosome" evidence=ISS] [GO:0046833
            "positive regulation of RNA export from nucleus" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340 GO:GO:0051028
            GO:GO:0006370 GO:GO:0045292 PANTHER:PTHR18847 GO:GO:0046833
            GO:GO:0006408 EMBL:BT079543 ProteinModelPortal:C1BY64
            Uniprot:C1BY64
        Length = 155

 Score = 141 (54.7 bits), Expect = 3.4e-09, P = 3.4e-09
 Identities = 32/77 (41%), Positives = 44/77 (57%)

Query:   179 SRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAK 238
             S  L V  LS YTTE+Q+  +FSK G V+R+ + +D     + GFCFV + +R DA  A 
Sbjct:    38 SNTLYVGNLSFYTTEEQVYELFSKSGDVKRIIIGLDKVKKTACGFCFVEYYTRADAENAM 97

Query:   239 DACTGMEIDGRQIRVDF 255
                 G  +D R IR D+
Sbjct:    98 RFVNGTRLDDRIIRTDW 114


>UNIPROTKB|P52299 [details] [associations]
            symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
            species:8355 "Xenopus laevis" [GO:0000184 "nuclear-transcribed mRNA
            catabolic process, nonsense-mediated decay" evidence=ISS]
            [GO:0000340 "RNA 7-methylguanosine cap binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0005654 "nucleoplasm"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005845
            "mRNA cap binding complex" evidence=ISS] [GO:0006370
            "7-methylguanosine mRNA capping" evidence=ISS] [GO:0006408 "snRNA
            export from nucleus" evidence=IDA] [GO:0006446 "regulation of
            translational initiation" evidence=ISS] [GO:0008380 "RNA splicing"
            evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
            evidence=ISS] [GO:0046833 "positive regulation of RNA export from
            nucleus" evidence=IDA] [GO:0003723 "RNA binding" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
            GO:GO:0005654 GO:GO:0000184 GO:GO:0000166 GO:GO:0006446
            Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0005845 GO:GO:0000340
            GO:GO:0051028 GO:GO:0006370 GO:GO:0045292 HOVERGEN:HBG052581
            PANTHER:PTHR18847 KO:K12883 CTD:22916 GO:GO:0046833 GO:GO:0006408
            EMBL:BC072902 EMBL:X84788 PIR:I51602 RefSeq:NP_001167476.1
            UniGene:Xl.43439 UniGene:Xl.81730 ProteinModelPortal:P52299
            SMR:P52299 GeneID:100380998 KEGG:xla:100380998
            Xenbase:XB-GENE-1005792 Uniprot:P52299
        Length = 153

 Score = 141 (54.7 bits), Expect = 3.4e-09, P = 3.4e-09
 Identities = 31/74 (41%), Positives = 44/74 (59%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L V  LS YTTE+QI+ +FSK G V+R+ + +D     + GFCFV + +R DA  A    
Sbjct:    39 LYVGNLSFYTTEEQIHELFSKSGDVKRIVMGLDKVKKTACGFCFVEYYTRADAEQAMRFI 98

Query:   242 TGMEIDGRQIRVDF 255
              G  +D R +R D+
Sbjct:    99 NGTRLDDRIVRTDW 112


>UNIPROTKB|Q83CD7 [details] [associations]
            symbol:CBU_1183 "Glycine-rich RNA-binding protein"
            species:227377 "Coxiella burnetii RSA 493" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
            GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
            RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
            GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
            ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
            Uniprot:Q83CD7
        Length = 117

 Score = 140 (54.3 bits), Expect = 4.5e-09, P = 4.5e-09
 Identities = 25/73 (34%), Positives = 45/73 (61%)

Query:   184 VFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTG 243
             V  LS   T  ++   F +YG +E  ++++D +TGRS+GF F+ + ++D A  A     G
Sbjct:    22 VGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKANG 81

Query:   244 MEIDGRQIRVDFS 256
             +++ GR+IRV+ +
Sbjct:    82 IDLQGRKIRVNIA 94


>TIGR_CMR|CBU_1183 [details] [associations]
            symbol:CBU_1183 "nucleic acid binding domain protein"
            species:227377 "Coxiella burnetii RSA 493" [GO:0008150
            "biological_process" evidence=ND] [GO:0003676 "nucleic acid
            binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
            GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
            RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
            GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
            ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
            Uniprot:Q83CD7
        Length = 117

 Score = 140 (54.3 bits), Expect = 4.5e-09, P = 4.5e-09
 Identities = 25/73 (34%), Positives = 45/73 (61%)

Query:   184 VFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTG 243
             V  LS   T  ++   F +YG +E  ++++D +TGRS+GF F+ + ++D A  A     G
Sbjct:    22 VGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKANG 81

Query:   244 MEIDGRQIRVDFS 256
             +++ GR+IRV+ +
Sbjct:    82 IDLQGRKIRVNIA 94


>UNIPROTKB|K7GNR2 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
            Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
        Length = 129

 Score = 139 (54.0 bits), Expect = 5.7e-09, P = 5.7e-09
 Identities = 33/82 (40%), Positives = 50/82 (60%)

Query:   174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDD 233
             E  +P + L + GL+  T E+ +  +F KYG +  V ++ D +T +SRGF FV FES  D
Sbjct:     3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61

Query:   234 AA-AAKDACTGMEIDGRQIRVD 254
             A  AA+D   G  +DG+ I+V+
Sbjct:    62 AKDAARDM-NGKSLDGKAIKVE 82


>UNIPROTKB|B5G279 [details] [associations]
            symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
            species:59729 "Taeniopygia guttata" [GO:0000340 "RNA
            7-methylguanosine cap binding" evidence=ISS] [GO:0045292 "mRNA cis
            splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006417
            GO:GO:0000184 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047
            GO:GO:0000340 GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370
            GO:GO:0045292 HOGENOM:HOG000217589 OrthoDB:EOG470TJG
            PANTHER:PTHR18847 KO:K12883 EMBL:DQ215986 RefSeq:NP_001232044.1
            UniGene:Tgu.10927 ProteinModelPortal:B5G279 STRING:B5G279
            GeneID:100190722 KEGG:tgu:100190722 Uniprot:B5G279
        Length = 168

 Score = 139 (54.0 bits), Expect = 5.7e-09, P = 5.7e-09
 Identities = 33/77 (42%), Positives = 43/77 (55%)

Query:   179 SRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAK 238
             S  L V  LS YTTE+QI  +FSK G V+R+ + +D       GFCFV + +R DA  A 
Sbjct:    42 SSTLYVGNLSFYTTEEQIQELFSKCGDVKRIVMGLDKIKKTPCGFCFVEYYTRADAEHAM 101

Query:   239 DACTGMEIDGRQIRVDF 255
                 G  +D R IR D+
Sbjct:   102 RFINGTRLDDRIIRTDW 118


>UNIPROTKB|C0H859 [details] [associations]
            symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
            species:8030 "Salmo salar" [GO:0000340 "RNA 7-methylguanosine cap
            binding" evidence=ISS] [GO:0006408 "snRNA export from nucleus"
            evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS] [GO:0045292
            "mRNA cis splicing, via spliceosome" evidence=ISS] [GO:0046833
            "positive regulation of RNA export from nucleus" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340 GO:GO:0051028
            GO:GO:0006370 GO:GO:0045292 PANTHER:PTHR18847 GO:GO:0046833
            GO:GO:0006408 EMBL:BT043732 EMBL:BT058515 EMBL:BT060223
            UniGene:Ssa.8109 ProteinModelPortal:C0H859 Uniprot:C0H859
        Length = 155

 Score = 139 (54.0 bits), Expect = 5.7e-09, P = 5.7e-09
 Identities = 31/74 (41%), Positives = 43/74 (58%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L V  LS YTTE+Q+  +FSK G V+R+ + +D     + GFCFV + +R DA  A    
Sbjct:    41 LYVGNLSFYTTEEQVYELFSKSGDVKRIIIGLDKVKKTACGFCFVEYYTRTDAENAMRFV 100

Query:   242 TGMEIDGRQIRVDF 255
              G  +D R IR D+
Sbjct:   101 NGTRLDDRIIRTDW 114


>UNIPROTKB|Q6DES0 [details] [associations]
            symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
            species:8364 "Xenopus (Silurana) tropicalis" [GO:0000340 "RNA
            7-methylguanosine cap binding" evidence=ISS] [GO:0006408 "snRNA
            export from nucleus" evidence=ISS] [GO:0008380 "RNA splicing"
            evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
            evidence=ISS] [GO:0046833 "positive regulation of RNA export from
            nucleus" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340
            GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
            HOGENOM:HOG000217589 OrthoDB:EOG470TJG PANTHER:PTHR18847
            HSSP:P52298 KO:K12883 CTD:22916 GO:GO:0046833 GO:GO:0006408
            EMBL:CR761328 EMBL:BC077024 RefSeq:NP_001006879.1 UniGene:Str.170
            ProteinModelPortal:Q6DES0 SMR:Q6DES0 STRING:Q6DES0 PRIDE:Q6DES0
            GeneID:448671 KEGG:xtr:448671 Xenbase:XB-GENE-1005786
            InParanoid:Q6DES0 Bgee:Q6DES0 Uniprot:Q6DES0
        Length = 153

 Score = 139 (54.0 bits), Expect = 5.7e-09, P = 5.7e-09
 Identities = 31/74 (41%), Positives = 44/74 (59%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L V  LS YTTE+QI+ +FSK G V+++ + +D     + GFCFV + +R DA  A    
Sbjct:    39 LYVGNLSFYTTEEQIHELFSKSGDVKKIVMGLDKIKKTACGFCFVEYYTRTDAEQAMRFI 98

Query:   242 TGMEIDGRQIRVDF 255
              G  +D R IR D+
Sbjct:    99 NGTRLDDRIIRTDW 112


>ZFIN|ZDB-GENE-020419-31 [details] [associations]
            symbol:ncbp2 "nuclear cap binding protein subunit 2"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
            [GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IEA;ISS]
            [GO:0005846 "nuclear cap binding complex" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0005622 "intracellular"
            evidence=ISS] [GO:0008380 "RNA splicing" evidence=IEA;ISS]
            [GO:0046833 "positive regulation of RNA export from nucleus"
            evidence=ISS] [GO:0000340 "RNA 7-methylguanosine cap binding"
            evidence=ISS] [GO:0006408 "snRNA export from nucleus" evidence=ISS]
            [GO:0000184 "nuclear-transcribed mRNA catabolic process,
            nonsense-mediated decay" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
            [GO:0031047 "gene silencing by RNA" evidence=IEA] [GO:0051028 "mRNA
            transport" evidence=IEA] [GO:0006370 "7-methylguanosine mRNA
            capping" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-020419-31
            GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340
            GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
            HOGENOM:HOG000217589 OrthoDB:EOG470TJG PANTHER:PTHR18847
            HSSP:P52298 KO:K12883 CTD:22916 GeneTree:ENSGT00390000003197
            OMA:RQDYDPA GO:GO:0046833 GO:GO:0006408 EMBL:AY099530 EMBL:AL953867
            EMBL:BC083529 IPI:IPI00487113 RefSeq:NP_775356.1 UniGene:Dr.83993
            ProteinModelPortal:Q8JGR6 SMR:Q8JGR6 STRING:Q8JGR6
            Ensembl:ENSDART00000008365 GeneID:192325 KEGG:dre:192325
            InParanoid:Q8JGR6 NextBio:20797161 Bgee:Q8JGR6 Uniprot:Q8JGR6
        Length = 155

 Score = 139 (54.0 bits), Expect = 5.7e-09, P = 5.7e-09
 Identities = 31/77 (40%), Positives = 45/77 (58%)

Query:   179 SRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAK 238
             S  L V  LS YTTE+Q++ +F+K G V+R+ + +D     + GFCFV + +R DA  A 
Sbjct:    38 SATLYVGNLSFYTTEEQVHELFAKCGDVKRIIIGLDKIKKTACGFCFVEYYTRADAENAM 97

Query:   239 DACTGMEIDGRQIRVDF 255
                 G  +D R IR D+
Sbjct:    98 RFVNGTRLDDRIIRTDW 114


>UNIPROTKB|Q5ZKR5 [details] [associations]
            symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
            species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005846 "nuclear cap binding complex"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IEA] [GO:0006370
            "7-methylguanosine mRNA capping" evidence=IEA] [GO:0006417
            "regulation of translation" evidence=IEA] [GO:0031047 "gene
            silencing by RNA" evidence=IEA] [GO:0051028 "mRNA transport"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
            spliceosome" evidence=ISS] [GO:0000340 "RNA 7-methylguanosine cap
            binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340
            GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
            HOGENOM:HOG000217589 OrthoDB:EOG470TJG PANTHER:PTHR18847
            HSSP:P52298 KO:K12883 CTD:22916 GeneTree:ENSGT00390000003197
            OMA:YRTDYDV EMBL:AJ720019 IPI:IPI00603887 RefSeq:NP_001006430.1
            UniGene:Gga.6356 ProteinModelPortal:Q5ZKR5 SMR:Q5ZKR5
            Ensembl:ENSGALT00000009239 GeneID:422214 KEGG:gga:422214
            InParanoid:Q5ZKR5 NextBio:20824880 Uniprot:Q5ZKR5
        Length = 168

 Score = 138 (53.6 bits), Expect = 7.4e-09, P = 7.4e-09
 Identities = 32/77 (41%), Positives = 43/77 (55%)

Query:   179 SRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAK 238
             S  L V  LS YTTE+QI  +FSK G V+R+ + +D       GFCFV + +R DA  A 
Sbjct:    42 SSTLYVGNLSFYTTEEQIQELFSKCGDVKRIVMGLDKIKKTPCGFCFVEYYTRADAEHAM 101

Query:   239 DACTGMEIDGRQIRVDF 255
                 G  +D R +R D+
Sbjct:   102 RFINGTRLDDRIVRTDW 118


>FB|FBgn0031883 [details] [associations]
            symbol:CG11266 species:7227 "Drosophila melanogaster"
            [GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0008380 "RNA
            splicing" evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
            splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
            evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014134
            GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
            GO:GO:0000398 GO:GO:0071013 GO:GO:0000381 HSSP:Q60900
            TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI
            GeneTree:ENSGT00690000102089 UniGene:Dm.7322 GeneID:33989
            KEGG:dme:Dmel_CG11266 FlyBase:FBgn0031883 ChiTaRS:CG11266
            GenomeRNAi:33989 NextBio:786302 EMBL:AY051860 RefSeq:NP_609095.1
            RefSeq:NP_723243.1 SMR:Q9VM49 IntAct:Q9VM49 MINT:MINT-745605
            STRING:Q9VM49 EnsemblMetazoa:FBtr0089636 EnsemblMetazoa:FBtr0089640
            UCSC:CG11266-RA InParanoid:Q9VM49 Uniprot:Q9VM49
        Length = 594

 Score = 142 (55.0 bits), Expect = 8.4e-09, Sum P(2) = 8.4e-09
 Identities = 33/110 (30%), Positives = 61/110 (55%)

Query:   178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAA 237
             P R L V  L    TE  +  IF  +G ++ +++++D +TGRS+G+ F+ + + DDA  A
Sbjct:   334 PMR-LYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKA 392

Query:   238 KDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTYEQLNNTQSELGS 287
              +   G E+ GR ++V  +VT+R    T  +       ++++ T  +LG+
Sbjct:   393 LEQLNGFELAGRLMKVG-NVTERLDMNTTSL-----DTDEMDRTGIDLGA 436

 Score = 62 (26.9 bits), Expect = 8.4e-09, Sum P(2) = 8.4e-09
 Identities = 18/41 (43%), Positives = 22/41 (53%)

Query:    46 DQCYYRLSPARSGSAGSIDDKKYRKSITRSRSGSPHRRSKR 86
             D  Y    P R+GS G    KK  K  +RSRSGS   +S+R
Sbjct:    44 DDDYAENGP-RNGSGGGSSHKKQSKR-SRSRSGSRDGKSRR 82

 Score = 39 (18.8 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
 Identities = 12/37 (32%), Positives = 16/37 (43%)

Query:    51 RLSPARSGSAGSIDDKKYRKSITRSRSGSPHRRSKRP 87
             R S  R G + S+   + R    RSRS    R+   P
Sbjct:   152 RRSRDRRGGSKSLQVDRSRDKRRRSRSRDQQRKRLSP 188


>UNIPROTKB|Q3ZBJ1 [details] [associations]
            symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
            species:9913 "Bos taurus" [GO:0045292 "mRNA cis splicing, via
            spliceosome" evidence=ISS] [GO:0006408 "snRNA export from nucleus"
            evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS] [GO:0046833
            "positive regulation of RNA export from nucleus" evidence=ISS]
            [GO:0006446 "regulation of translational initiation" evidence=ISS]
            [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0000340 "RNA
            7-methylguanosine cap binding" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0000184 "nuclear-transcribed mRNA
            catabolic process, nonsense-mediated decay" evidence=ISS]
            [GO:0005845 "mRNA cap binding complex" evidence=ISS] [GO:0006370
            "7-methylguanosine mRNA capping" evidence=ISS] [GO:0051028 "mRNA
            transport" evidence=IEA] [GO:0031047 "gene silencing by RNA"
            evidence=IEA] [GO:0005846 "nuclear cap binding complex"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
            GO:GO:0005654 GO:GO:0000184 GO:GO:0000166 GO:GO:0006446
            Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0005845 GO:GO:0000340
            GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
            HOGENOM:HOG000217589 HOVERGEN:HBG052581 OrthoDB:EOG470TJG
            PANTHER:PTHR18847 KO:K12883 EMBL:BC103267 IPI:IPI00687118
            RefSeq:NP_001029568.1 UniGene:Bt.49382 ProteinModelPortal:Q3ZBJ1
            SMR:Q3ZBJ1 STRING:Q3ZBJ1 PRIDE:Q3ZBJ1 Ensembl:ENSBTAT00000011684
            GeneID:510872 KEGG:bta:510872 CTD:22916
            GeneTree:ENSGT00390000003197 InParanoid:Q3ZBJ1 OMA:RQDYDPA
            NextBio:20869659 GO:GO:0046833 GO:GO:0006408 Uniprot:Q3ZBJ1
        Length = 156

 Score = 137 (53.3 bits), Expect = 9.5e-09, P = 9.5e-09
 Identities = 31/74 (41%), Positives = 43/74 (58%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L V  LS YTTE+QI  +FSK G ++++ + +D     + GFCFV + SR DA  A    
Sbjct:    42 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 101

Query:   242 TGMEIDGRQIRVDF 255
              G  +D R IR D+
Sbjct:   102 NGTRLDDRIIRTDW 115


>UNIPROTKB|E2RFC9 [details] [associations]
            symbol:NCBP2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0045292 "mRNA cis splicing, via spliceosome"
            evidence=IEA] [GO:0006446 "regulation of translational initiation"
            evidence=IEA] [GO:0006370 "7-methylguanosine mRNA capping"
            evidence=IEA] [GO:0005845 "mRNA cap binding complex" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005654 "nucleoplasm"
            evidence=IEA] [GO:0000340 "RNA 7-methylguanosine cap binding"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IEA] [GO:0005846
            "nuclear cap binding complex" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005737 GO:GO:0005654 GO:GO:0000184 GO:GO:0000166
            GO:GO:0006446 Gene3D:3.30.70.330 GO:GO:0005845 GO:GO:0000340
            GO:GO:0006370 PANTHER:PTHR18847 KO:K12883 CTD:22916
            GeneTree:ENSGT00390000003197 OMA:RQDYDPA EMBL:AAEX03017103
            RefSeq:XP_535779.1 ProteinModelPortal:E2RFC9 SMR:E2RFC9
            PRIDE:E2RFC9 Ensembl:ENSCAFT00000020794 GeneID:478603
            KEGG:cfa:478603 NextBio:20853918 Uniprot:E2RFC9
        Length = 156

 Score = 137 (53.3 bits), Expect = 9.5e-09, P = 9.5e-09
 Identities = 31/74 (41%), Positives = 43/74 (58%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L V  LS YTTE+QI  +FSK G ++++ + +D     + GFCFV + SR DA  A    
Sbjct:    42 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 101

Query:   242 TGMEIDGRQIRVDF 255
              G  +D R IR D+
Sbjct:   102 NGTRLDDRIIRTDW 115


>UNIPROTKB|P52298 [details] [associations]
            symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005846 "nuclear cap binding complex"
            evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0006408 "snRNA export
            from nucleus" evidence=ISS;NAS] [GO:0000340 "RNA 7-methylguanosine
            cap binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
            [GO:0000184 "nuclear-transcribed mRNA catabolic process,
            nonsense-mediated decay" evidence=IMP;IDA;TAS] [GO:0006370
            "7-methylguanosine mRNA capping" evidence=IDA;TAS] [GO:0005845
            "mRNA cap binding complex" evidence=IDA] [GO:0005654 "nucleoplasm"
            evidence=IDA;TAS] [GO:0006446 "regulation of translational
            initiation" evidence=IDA] [GO:0046833 "positive regulation of RNA
            export from nucleus" evidence=ISS] [GO:0008380 "RNA splicing"
            evidence=ISS;TAS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0003723 "RNA binding" evidence=IDA] [GO:0000339 "RNA cap
            binding" evidence=NAS] [GO:0045292 "mRNA cis splicing, via
            spliceosome" evidence=IDA] [GO:0000387 "spliceosomal snRNP
            assembly" evidence=TAS] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=TAS] [GO:0006368 "transcription elongation from RNA
            polymerase II promoter" evidence=TAS] [GO:0006369 "termination of
            RNA polymerase II transcription" evidence=TAS] [GO:0006397 "mRNA
            processing" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
            evidence=TAS] [GO:0008334 "histone mRNA metabolic process"
            evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
            [GO:0016032 "viral reproduction" evidence=TAS] [GO:0016070 "RNA
            metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
            process" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
            evidence=TAS] [GO:0034660 "ncRNA metabolic process" evidence=TAS]
            [GO:0050434 "positive regulation of viral transcription"
            evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
            Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
            InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005829 Reactome:REACT_116125 GO:GO:0005654
            GO:GO:0016032 GO:GO:0000184 GO:GO:0000166 GO:GO:0006446
            Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006368 GO:GO:0006406
            GO:GO:0031047 GO:GO:0005845 GO:GO:0000340 GO:GO:0000387
            GO:GO:0034660 EMBL:CH471191 Reactome:REACT_1788 eggNOG:COG0724
            GO:GO:0006370 GO:GO:0050434 GO:GO:0045292 GO:GO:0006369
            GO:GO:0031124 Reactome:REACT_78 PDB:3FEX PDB:3FEY PDBsum:3FEX
            PDBsum:3FEY GO:GO:0008334 HOGENOM:HOG000217589 HOVERGEN:HBG052581
            PANTHER:PTHR18847 PDB:1H2T PDB:1H2U PDB:1H2V PDB:1H6K PDB:1N52
            PDB:1N54 PDBsum:1H2T PDBsum:1H2U PDBsum:1H2V PDBsum:1H6K
            PDBsum:1N52 PDBsum:1N54 KO:K12883 CTD:22916 OMA:RQDYDPA
            GO:GO:0046833 GO:GO:0006408 EMBL:X84157 EMBL:D59253 EMBL:AK297506
            EMBL:AK315903 EMBL:AK316601 EMBL:AY644767 EMBL:BT006842
            EMBL:BC001255 IPI:IPI00183500 IPI:IPI00927860 PIR:I37222 PIR:S60109
            RefSeq:NP_001036005.1 RefSeq:NP_031388.2 UniGene:Hs.591671
            DisProt:DP00393 ProteinModelPortal:P52298 SMR:P52298 DIP:DIP-33246N
            IntAct:P52298 MINT:MINT-248711 STRING:P52298 PhosphoSite:P52298
            DMDM:1705651 PaxDb:P52298 PRIDE:P52298 DNASU:22916
            Ensembl:ENST00000321256 Ensembl:ENST00000452404 GeneID:22916
            KEGG:hsa:22916 UCSC:uc003fxb.1 UCSC:uc011btz.1
            GeneCards:GC03M196662 HGNC:HGNC:7659 HPA:HPA044850 MIM:605133
            neXtProt:NX_P52298 PharmGKB:PA31462 InParanoid:P52298
            PhylomeDB:P52298 ChiTaRS:NCBP2 EvolutionaryTrace:P52298
            GenomeRNAi:22916 NextBio:43603 ArrayExpress:P52298 Bgee:P52298
            CleanEx:HS_NCBP2 Genevestigator:P52298 GermOnline:ENSG00000114503
            Uniprot:P52298
        Length = 156

 Score = 137 (53.3 bits), Expect = 9.5e-09, P = 9.5e-09
 Identities = 31/74 (41%), Positives = 43/74 (58%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L V  LS YTTE+QI  +FSK G ++++ + +D     + GFCFV + SR DA  A    
Sbjct:    42 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 101

Query:   242 TGMEIDGRQIRVDF 255
              G  +D R IR D+
Sbjct:   102 NGTRLDDRIIRTDW 115


>UNIPROTKB|F2Z5Q9 [details] [associations]
            symbol:NCBP2 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0045292 "mRNA cis splicing, via spliceosome"
            evidence=IEA] [GO:0005846 "nuclear cap binding complex"
            evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            PANTHER:PTHR18847 KO:K12883 CTD:22916 GeneTree:ENSGT00390000003197
            OMA:RQDYDPA EMBL:CU862047 RefSeq:XP_003358812.2 UniGene:Ssc.56609
            ProteinModelPortal:F2Z5Q9 SMR:F2Z5Q9 PRIDE:F2Z5Q9
            Ensembl:ENSSSCT00000024784 GeneID:100156513 KEGG:ssc:100156513
            Uniprot:F2Z5Q9
        Length = 156

 Score = 137 (53.3 bits), Expect = 9.5e-09, P = 9.5e-09
 Identities = 31/74 (41%), Positives = 43/74 (58%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L V  LS YTTE+QI  +FSK G ++++ + +D     + GFCFV + SR DA  A    
Sbjct:    42 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 101

Query:   242 TGMEIDGRQIRVDF 255
              G  +D R IR D+
Sbjct:   102 NGTRLDDRIIRTDW 115


>UNIPROTKB|A2SW84 [details] [associations]
            symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
            species:119488 "Siniperca chuatsi" [GO:0000340 "RNA
            7-methylguanosine cap binding" evidence=ISS] [GO:0006408 "snRNA
            export from nucleus" evidence=ISS] [GO:0008380 "RNA splicing"
            evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
            evidence=ISS] [GO:0046833 "positive regulation of RNA export from
            nucleus" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340
            GO:GO:0051028 GO:GO:0006370 GO:GO:0045292 PANTHER:PTHR18847
            GO:GO:0046833 GO:GO:0006408 EMBL:DQ359156 ProteinModelPortal:A2SW84
            SMR:A2SW84 Uniprot:A2SW84
        Length = 165

 Score = 137 (53.3 bits), Expect = 9.5e-09, P = 9.5e-09
 Identities = 31/77 (40%), Positives = 44/77 (57%)

Query:   179 SRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAK 238
             S  L V  LS YTTE+Q++ +FSK G V+R+ + +D     + GFCFV + +R  A  A 
Sbjct:    38 SHTLYVGNLSFYTTEEQVHELFSKSGDVKRIIIGLDKVKKTACGFCFVEYYTRAGAENAM 97

Query:   239 DACTGMEIDGRQIRVDF 255
                 G  +D R IR D+
Sbjct:    98 RFINGTRLDDRIIRADW 114


>MGI|MGI:1915342 [details] [associations]
            symbol:Ncbp2 "nuclear cap binding protein subunit 2"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=ISO] [GO:0000340 "RNA
            7-methylguanosine cap binding" evidence=ISO] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
            evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005845
            "mRNA cap binding complex" evidence=ISO] [GO:0006370
            "7-methylguanosine mRNA capping" evidence=ISO] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0006417 "regulation of translation"
            evidence=IEA] [GO:0006446 "regulation of translational initiation"
            evidence=ISO] [GO:0006810 "transport" evidence=IEA] [GO:0008380
            "RNA splicing" evidence=IEA] [GO:0031047 "gene silencing by RNA"
            evidence=IEA] [GO:0045292 "mRNA cis splicing, via spliceosome"
            evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1915342
            GO:GO:0005737 GO:GO:0005654 GO:GO:0000184 GO:GO:0000166
            GO:GO:0006446 Gene3D:3.30.70.330 EMBL:CH466521 GO:GO:0031047
            GO:GO:0005845 GO:GO:0000340 GO:GO:0051028 eggNOG:COG0724
            GO:GO:0006370 GO:GO:0045292 HOGENOM:HOG000217589 HOVERGEN:HBG052581
            OrthoDB:EOG470TJG PANTHER:PTHR18847 KO:K12883 CTD:22916
            GeneTree:ENSGT00390000003197 OMA:RQDYDPA GO:GO:0046833
            GO:GO:0006408 EMBL:AK008980 EMBL:AK012659 EMBL:AK077841
            EMBL:AK147027 EMBL:BC118926 IPI:IPI00132019 RefSeq:NP_080830.1
            UniGene:Mm.290027 ProteinModelPortal:Q9CQ49 SMR:Q9CQ49
            STRING:Q9CQ49 PhosphoSite:Q9CQ49 PaxDb:Q9CQ49 PRIDE:Q9CQ49
            Ensembl:ENSMUST00000023460 GeneID:68092 KEGG:mmu:68092
            UCSC:uc007yxz.2 InParanoid:Q0VF93 NextBio:326400 Bgee:Q9CQ49
            CleanEx:MM_NCBP2 Genevestigator:Q9CQ49
            GermOnline:ENSMUSG00000022774 Uniprot:Q9CQ49
        Length = 156

 Score = 137 (53.3 bits), Expect = 9.5e-09, P = 9.5e-09
 Identities = 31/74 (41%), Positives = 43/74 (58%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L V  LS YTTE+QI  +FSK G ++++ + +D     + GFCFV + SR DA  A    
Sbjct:    42 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 101

Query:   242 TGMEIDGRQIRVDF 255
              G  +D R IR D+
Sbjct:   102 NGTRLDDRIIRTDW 115


>RGD|1596188 [details] [associations]
            symbol:Ncbp2 "nuclear cap binding protein subunit 2"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IEA;ISO] [GO:0000340
            "RNA 7-methylguanosine cap binding" evidence=ISO;ISS] [GO:0005634
            "nucleus" evidence=IEA;ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
            [GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0005845 "mRNA cap
            binding complex" evidence=ISO] [GO:0005846 "nuclear cap binding
            complex" evidence=IEA] [GO:0006370 "7-methylguanosine mRNA capping"
            evidence=IEA;ISO] [GO:0006408 "snRNA export from nucleus"
            evidence=ISS] [GO:0006417 "regulation of translation" evidence=IEA]
            [GO:0006446 "regulation of translational initiation" evidence=ISO]
            [GO:0008380 "RNA splicing" evidence=ISS] [GO:0031047 "gene
            silencing by RNA" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
            spliceosome" evidence=ISO;ISS] [GO:0046833 "positive regulation of
            RNA export from nucleus" evidence=ISS] [GO:0051028 "mRNA transport"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005730
            "nucleolus" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
            InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1596188 GO:GO:0005737 GO:GO:0005654 GO:GO:0000184 GO:GO:0000166
            GO:GO:0006446 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0005845
            GO:GO:0000340 GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370
            GO:GO:0045292 HOGENOM:HOG000217589 OrthoDB:EOG470TJG
            PANTHER:PTHR18847 KO:K12883 GeneTree:ENSGT00390000003197
            OMA:RQDYDPA GO:GO:0046833 GO:GO:0006408 EMBL:BC161994
            IPI:IPI00192753 RefSeq:NP_001102995.1 RefSeq:XP_003751123.1
            UniGene:Rn.204538 ProteinModelPortal:B1WC40 SMR:B1WC40
            STRING:B1WC40 PhosphoSite:B1WC40 PRIDE:B1WC40
            Ensembl:ENSRNOT00000002381 GeneID:100911481 GeneID:689116
            KEGG:rno:100911481 KEGG:rno:689116 UCSC:RGD:1596188 CTD:80235
            NextBio:737969 Genevestigator:B1WC40 Uniprot:B1WC40
        Length = 156

 Score = 137 (53.3 bits), Expect = 9.5e-09, P = 9.5e-09
 Identities = 31/74 (41%), Positives = 43/74 (58%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L V  LS YTTE+QI  +FSK G ++++ + +D     + GFCFV + SR DA  A    
Sbjct:    42 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 101

Query:   242 TGMEIDGRQIRVDF 255
              G  +D R IR D+
Sbjct:   102 NGTRLDDRIIRTDW 115


>TAIR|locus:2019622 [details] [associations]
            symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
            "ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
            evidence=IDA] [GO:0010228 "vegetative to reproductive phase
            transition of meristem" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
            EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
            IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
            ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
            EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
            GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
            ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
        Length = 289

 Score = 154 (59.3 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 36/89 (40%), Positives = 55/89 (61%)

Query:   177 QPSRCLG---VF--GLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESR 231
             Q  RC+    +F  G+S  T E  +   FSKYG V   ++++D +TGRSRGF FV F S 
Sbjct:    26 QSIRCMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTST 85

Query:   232 DDAAAAKDACTGMEIDGRQIRVDFSVTQR 260
             ++A+ A     G ++ GR+IRV+++ T+R
Sbjct:    86 EEASNAMQL-DGQDLHGRRIRVNYA-TER 112


>UNIPROTKB|H7BY16 [details] [associations]
            symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC017104 HGNC:HGNC:7667
            ChiTaRS:NCL ProteinModelPortal:H7BY16 PRIDE:H7BY16
            Ensembl:ENST00000356936 Bgee:H7BY16 Uniprot:H7BY16
        Length = 297

 Score = 154 (59.3 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 37/80 (46%), Positives = 50/80 (62%)

Query:   177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAA 236
             QPS+ L V GLS  TTE+ +   F   G V R  +V D +TG S+GF FV F S +DA A
Sbjct:   194 QPSKTLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKA 250

Query:   237 AKDACTGMEIDGRQIRVDFS 256
             AK+A    EIDG ++ +D++
Sbjct:   251 AKEAMEDGEIDGNKVTLDWA 270


>WB|WBGene00011155 [details] [associations]
            symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
            HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
            SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
            PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
            KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
            InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
        Length = 83

 Score = 136 (52.9 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 25/66 (37%), Positives = 38/66 (57%)

Query:   191 TTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQ 250
             TTE+++ + FS  G +  V +V D +TGR RGF F+ F     A  A +   G E +GR 
Sbjct:    16 TTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQMNGAEFNGRP 75

Query:   251 IRVDFS 256
             +RV+ +
Sbjct:    76 LRVNLA 81


>DICTYBASE|DDB_G0292698 [details] [associations]
            symbol:DDB_G0292698 "RNA-binding region RNP-1
            domain-containing protein" species:44689 "Dictyostelium discoideum"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0044351 "macropinocytosis" evidence=RCA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 dictyBase:DDB_G0292698 GO:GO:0000166
            EMBL:AAFI02000194 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG297815
            RefSeq:XP_629578.1 ProteinModelPortal:Q54CU2 STRING:Q54CU2
            PRIDE:Q54CU2 EnsemblProtists:DDB0233351 GeneID:8628839
            KEGG:ddi:DDB_G0292698 InParanoid:Q54CU2 OMA:DPNTKES Uniprot:Q54CU2
        Length = 306

 Score = 151 (58.2 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
 Identities = 36/102 (35%), Positives = 49/102 (48%)

Query:   170 ADGRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFE 229
             +D   +      L V  L+  T E  +   F+  G V    +++D  T  SRGF FV + 
Sbjct:    61 SDNNVDQNNGNTLHVSNLNPRTRESDLRDTFASIGKVIDCTILLDPNTKESRGFGFVTYS 120

Query:   230 SRDDAAAAKDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMG 271
             S D+A  A       +IDG  IRV+ S   +A  PTPG YMG
Sbjct:   121 SGDEAQDAIQRLDSTKIDGNTIRVEKSKRSKARDPTPGFYMG 162

 Score = 39 (18.8 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
 Identities = 8/22 (36%), Positives = 11/22 (50%)

Query:   262 HTPTPGIYMGRPTYEQLNNTQS 283
             + P+   Y   PTY + NN  S
Sbjct:   227 YPPSYPSYPSYPTYPKYNNNDS 248


>FB|FBgn0032822 [details] [associations]
            symbol:CG10466 species:7227 "Drosophila melanogaster"
            [GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 EMBL:AE014134 GO:GO:0000166 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
            eggNOG:COG0724 KO:K13107 GeneTree:ENSGT00600000084414 HSSP:P33240
            RefSeq:NP_610003.1 UniGene:Dm.28254 ProteinModelPortal:Q9VIS0
            SMR:Q9VIS0 IntAct:Q9VIS0 MINT:MINT-903544 STRING:Q9VIS0
            PaxDb:Q9VIS0 PRIDE:Q9VIS0 EnsemblMetazoa:FBtr0081291
            EnsemblMetazoa:FBtr0332178 GeneID:35268 KEGG:dme:Dmel_CG10466
            UCSC:CG10466-RA FlyBase:FBgn0032822 InParanoid:Q9VIS0 OMA:YMEGCAP
            OrthoDB:EOG4ZPCBP PhylomeDB:Q9VIS0 GenomeRNAi:35268 NextBio:792713
            ArrayExpress:Q9VIS0 Bgee:Q9VIS0 Uniprot:Q9VIS0
        Length = 154

 Score = 135 (52.6 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 27/66 (40%), Positives = 42/66 (63%)

Query:   190 YT-TEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDG 248
             YT TE  +  +FS+YG V  + ++ D+KTG+S+GFCF+ +E +     A D   G++I  
Sbjct:    43 YTLTEGDLVCVFSQYGEVVNINLIRDSKTGKSKGFCFLCYEDQRSTVLAVDNLNGIKILD 102

Query:   249 RQIRVD 254
             R +RVD
Sbjct:   103 RTLRVD 108


>POMBASE|SPBC13A2.01c [details] [associations]
            symbol:SPBC13A2.01c "nuclear cap-binding complex small
            subunit (predicted)" species:4896 "Schizosaccharomyces pombe"
            [GO:0000243 "commitment complex" evidence=ISO] [GO:0000339 "RNA cap
            binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005819 "spindle" evidence=IDA] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0005846 "nuclear cap binding complex"
            evidence=ISO] [GO:0045292 "mRNA cis splicing, via spliceosome"
            evidence=ISO] [GO:0048471 "perinuclear region of cytoplasm"
            evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPBC13A2.01c
            GO:GO:0005829 GO:GO:0048471 GO:GO:0005819 GO:GO:0000166
            EMBL:CU329671 Gene3D:3.30.70.330 GenomeReviews:CU329671_GR
            GO:GO:0051028 GO:GO:0000243 eggNOG:COG0724 GO:GO:0045292
            GO:GO:0000339 HOGENOM:HOG000217589 PANTHER:PTHR18847 GO:GO:0005846
            HSSP:P52298 KO:K12883 RefSeq:NP_596414.1 ProteinModelPortal:Q9P383
            SMR:Q9P383 STRING:Q9P383 EnsemblFungi:SPBC13A2.01c.1 GeneID:2539791
            KEGG:spo:SPBC13A2.01c OMA:EIRRIIM OrthoDB:EOG4W11PG
            NextBio:20800940 Uniprot:Q9P383
        Length = 182

 Score = 135 (52.6 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 33/77 (42%), Positives = 45/77 (58%)

Query:   179 SRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFV-YFESRDDAAAA 237
             S C+ V  LS YTTE+QI  +FSK G + R+ + +D  T    GFCFV YFE++D   + 
Sbjct:    31 SNCVYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSL 90

Query:   238 KDACTGMEIDGRQIRVD 254
             K   +   +D R IR D
Sbjct:    91 K-YISRTSLDERIIRAD 106


>UNIPROTKB|F1LMQ9 [details] [associations]
            symbol:Rbmx2 "RNA-binding motif protein, X-linked 2"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:1562693 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00600000084414
            OMA:HRHKRAR IPI:IPI00361641 Ensembl:ENSRNOT00000048922
            Uniprot:F1LMQ9
        Length = 327

 Score = 153 (58.9 bits), Expect = 1.9e-08, P = 1.9e-08
 Identities = 32/76 (42%), Positives = 44/76 (57%)

Query:   186 GLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGME 245
             GL    TE  I  +FS+YG +  + +V D KTG+S+GFCF+ +E +     A D   G++
Sbjct:    41 GLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIK 100

Query:   246 IDGRQIRVDFSVTQRA 261
             I GR IRVD     RA
Sbjct:   101 IKGRTIRVDHVANYRA 116


>RGD|1562693 [details] [associations]
            symbol:Rbmx2 "RNA binding motif protein, X-linked 2"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1562693 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107 CTD:51634
            HOVERGEN:HBG056427 OrthoDB:EOG4FJ8B4 EMBL:BC158684 IPI:IPI00361641
            RefSeq:NP_001107258.2 UniGene:Rn.67383 ProteinModelPortal:B0BN49
            STRING:B0BN49 GeneID:367930 KEGG:rno:367930 UCSC:RGD:1562693
            NextBio:691882 Genevestigator:B0BN49 Uniprot:B0BN49
        Length = 328

 Score = 153 (58.9 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 32/76 (42%), Positives = 44/76 (57%)

Query:   186 GLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGME 245
             GL    TE  I  +FS+YG +  + +V D KTG+S+GFCF+ +E +     A D   G++
Sbjct:    42 GLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIK 101

Query:   246 IDGRQIRVDFSVTQRA 261
             I GR IRVD     RA
Sbjct:   102 IKGRTIRVDHVANYRA 117


>UNIPROTKB|F1SMV6 [details] [associations]
            symbol:LOC100737174 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00550000074656 EMBL:CU856676
            Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
        Length = 365

 Score = 154 (59.3 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 36/80 (45%), Positives = 50/80 (62%)

Query:   177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAA 236
             QPS+ L V GLS  TTE+ +   F   G + R  +V D +TG S+GF FV F S +DA A
Sbjct:   223 QPSKTLFVKGLSEETTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNSEEDAKA 279

Query:   237 AKDACTGMEIDGRQIRVDFS 256
             AK+A    EIDG ++ +D++
Sbjct:   280 AKEAMEDGEIDGNKVTLDWA 299


>TAIR|locus:2119495 [details] [associations]
            symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
            "mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
            evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
            evidence=IDA] [GO:0003697 "single-stranded DNA binding"
            evidence=IDA] [GO:0009414 "response to water deprivation"
            evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
            "RNA binding transcription antitermination factor activity"
            evidence=IDA] [GO:0006970 "response to osmotic stress"
            evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
            [GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
            "seed germination" evidence=IMP] [GO:0031564 "transcription
            antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
            evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
            [GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
            GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
            eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
            EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
            EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
            RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
            ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
            PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
            GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
            InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
            Genevestigator:Q9SVM8 Uniprot:Q9SVM8
        Length = 158

 Score = 134 (52.2 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 30/73 (41%), Positives = 42/73 (57%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L + GLS  T +  +   F+ +G V   +V++D +TGRSRGF FV F     A AA    
Sbjct:    37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96

Query:   242 TGMEIDGRQIRVD 254
              G E++GR IRV+
Sbjct:    97 DGKELNGRHIRVN 109


>MGI|MGI:1919414 [details] [associations]
            symbol:Rbmx2 "RNA binding motif protein, X-linked 2"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1919414 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107
            EMBL:AL672042 GeneTree:ENSGT00600000084414 CTD:51634
            HOVERGEN:HBG056427 OrthoDB:EOG4FJ8B4 EMBL:AK076115 EMBL:AK168018
            EMBL:BC026976 IPI:IPI00261255 RefSeq:NP_775552.1 UniGene:Mm.32561
            ProteinModelPortal:Q8R0F5 SMR:Q8R0F5 STRING:Q8R0F5
            PhosphoSite:Q8R0F5 PRIDE:Q8R0F5 Ensembl:ENSMUST00000033433
            GeneID:209003 KEGG:mmu:209003 UCSC:uc009tct.1 InParanoid:A2AF74
            NextBio:372506 Bgee:Q8R0F5 CleanEx:MM_RBMX2 Genevestigator:Q8R0F5
            GermOnline:ENSMUSG00000031107 Uniprot:Q8R0F5
        Length = 326

 Score = 152 (58.6 bits), Expect = 2.5e-08, P = 2.5e-08
 Identities = 33/78 (42%), Positives = 45/78 (57%)

Query:   184 VFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTG 243
             V GL    TE  I  +FS+YG +  + +V D KTG+S+GFCF+ +E +     A D   G
Sbjct:    40 VGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNG 99

Query:   244 MEIDGRQIRVDFSVTQRA 261
             ++I GR IRVD     RA
Sbjct:   100 IKIKGRTIRVDHVSNYRA 117


>FB|FBgn0022943 [details] [associations]
            symbol:Cbp20 "cap binding protein 20" species:7227
            "Drosophila melanogaster" [GO:0000339 "RNA cap binding"
            evidence=ISS] [GO:0005846 "nuclear cap binding complex"
            evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005681
            "spliceosomal complex" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC;ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IEA]
            [GO:0005875 "microtubule associated complex" evidence=IDA]
            [GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
            "catalytic step 2 spliceosome" evidence=IDA] [GO:0045071 "negative
            regulation of viral genome replication" evidence=IMP] [GO:0035195
            "gene silencing by miRNA" evidence=IMP] [GO:0030422 "production of
            siRNA involved in RNA interference" evidence=IMP]
            InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
            GO:GO:0005875 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0045071 GO:GO:0030422 GO:GO:0071011 GO:GO:0000398
            GO:GO:0071013 eggNOG:COG0724 GO:GO:0006370 GO:GO:0031053
            GO:GO:0000339 PANTHER:PTHR18847 HSSP:P52298 KO:K12883
            GeneTree:ENSGT00390000003197 OMA:RQDYDPA EMBL:AJ238969
            EMBL:AY070578 RefSeq:NP_524396.1 UniGene:Dm.2405
            ProteinModelPortal:Q9V3L6 SMR:Q9V3L6 IntAct:Q9V3L6 MINT:MINT-987792
            STRING:Q9V3L6 PaxDb:Q9V3L6 PRIDE:Q9V3L6 EnsemblMetazoa:FBtr0083551
            GeneID:42166 KEGG:dme:Dmel_CG12357 UCSC:CG12357-RA CTD:42166
            FlyBase:FBgn0022943 InParanoid:Q9V3L6 OrthoDB:EOG4K0P4N
            PhylomeDB:Q9V3L6 GenomeRNAi:42166 NextBio:827474 Bgee:Q9V3L6
            Uniprot:Q9V3L6
        Length = 154

 Score = 133 (51.9 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 31/74 (41%), Positives = 42/74 (56%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L V  LS YTTE+QI+ +FS+ G V  + + +D       GFCFV +  R +A AA    
Sbjct:    32 LYVGNLSFYTTEEQIHELFSRCGDVRVIVMGLDKYKKTPCGFCFVEYYVRSEAEAAMRFV 91

Query:   242 TGMEIDGRQIRVDF 255
              G  +D R IRVD+
Sbjct:    92 NGTRLDDRLIRVDW 105


>UNIPROTKB|F1NIR6 [details] [associations]
            symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
            species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
            [GO:0005846 "nuclear cap binding complex" evidence=IEA] [GO:0045292
            "mRNA cis splicing, via spliceosome" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 PANTHER:PTHR18847
            GeneTree:ENSGT00390000003197 OMA:RQDYDPA EMBL:AADN02020536
            IPI:IPI00597191 ProteinModelPortal:F1NIR6
            Ensembl:ENSGALT00000011075 Uniprot:F1NIR6
        Length = 158

 Score = 133 (51.9 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 29/74 (39%), Positives = 43/74 (58%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L V  LS YTTE+QI+ +F K G ++++ + +D     + GFCFV + +R DA  A    
Sbjct:    44 LYVGNLSFYTTEEQIHELFGKSGDIKKIIMGLDKVKKTACGFCFVEYYARGDAENAMRYI 103

Query:   242 TGMEIDGRQIRVDF 255
              G  +D R IR D+
Sbjct:   104 NGTRLDDRIIRTDW 117


>UNIPROTKB|Q9Y388 [details] [associations]
            symbol:RBMX2 "RNA-binding motif protein, X-linked 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:CH471107 eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107
            EMBL:AL035423 EMBL:AF151837 EMBL:AL050405 EMBL:AK292855
            EMBL:BC033750 IPI:IPI00032597 RefSeq:NP_057108.2 UniGene:Hs.740515
            ProteinModelPortal:Q9Y388 SMR:Q9Y388 STRING:Q9Y388
            PhosphoSite:Q9Y388 DMDM:62512110 PRIDE:Q9Y388
            Ensembl:ENST00000305536 GeneID:51634 KEGG:hsa:51634 UCSC:uc004evt.3
            CTD:51634 GeneCards:GC0XP129535 HGNC:HGNC:24282 HPA:HPA026609
            neXtProt:NX_Q9Y388 PharmGKB:PA134872051 HOVERGEN:HBG056427
            InParanoid:Q9Y388 OMA:HRHKRAR OrthoDB:EOG4FJ8B4 GenomeRNAi:51634
            NextBio:55565 ArrayExpress:Q9Y388 Bgee:Q9Y388 CleanEx:HS_RBMX2
            Genevestigator:Q9Y388 GermOnline:ENSG00000134597 Uniprot:Q9Y388
        Length = 322

 Score = 150 (57.9 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
 Identities = 32/76 (42%), Positives = 44/76 (57%)

Query:   186 GLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGME 245
             GL    TE  I  +FS+YG +  + +V D KTG+S+GFCF+ +E +     A D   G++
Sbjct:    42 GLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIK 101

Query:   246 IDGRQIRVDFSVTQRA 261
             I GR IRVD     RA
Sbjct:   102 IKGRTIRVDHVSNYRA 117

 Score = 38 (18.4 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query:   332 FSGGMENTDPICTQEKAKKMKKS 354
             +SGG E+ +    +EK K   KS
Sbjct:   231 YSGGAEDLERELKKEKPKHEHKS 253


>UNIPROTKB|J3KP15 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000358156
            Uniprot:J3KP15
        Length = 134

 Score = 132 (51.5 bits), Expect = 3.4e-08, P = 3.4e-08
 Identities = 33/87 (37%), Positives = 44/87 (50%)

Query:   172 GRENP--QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFE 229
             GR  P  +    L V  L+  T+   +  +F KYG V  V +  D  T  SRGF FV F 
Sbjct:     4 GRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFH 63

Query:   230 SRDDAAAAKDACTGMEIDGRQIRVDFS 256
              + DA  A DA  G  +DGR++RV  +
Sbjct:    64 DKRDAEDAMDAMDGAVLDGRELRVQMA 90


>UNIPROTKB|J3QL05 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000583836
            Uniprot:J3QL05
        Length = 130

 Score = 132 (51.5 bits), Expect = 3.4e-08, P = 3.4e-08
 Identities = 33/87 (37%), Positives = 44/87 (50%)

Query:   172 GRENP--QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFE 229
             GR  P  +    L V  L+  T+   +  +F KYG V  V +  D  T  SRGF FV F 
Sbjct:     4 GRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFH 63

Query:   230 SRDDAAAAKDACTGMEIDGRQIRVDFS 256
              + DA  A DA  G  +DGR++RV  +
Sbjct:    64 DKRDAEDAMDAMDGAVLDGRELRVQMA 90


>ZFIN|ZDB-GENE-050327-97 [details] [associations]
            symbol:rbm39b "RNA binding motif protein 39b"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-050327-97
            GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
            HOGENOM:HOG000236253 GeneTree:ENSGT00690000102089 EMBL:CR550308
            EMBL:BC091794 IPI:IPI00498276 RefSeq:NP_001014392.1
            UniGene:Dr.76447 SMR:Q58ER0 Ensembl:ENSDART00000061328
            GeneID:541556 KEGG:dre:541556 CTD:541556 InParanoid:Q58ER0
            OMA:NCLASST NextBio:20879330 Uniprot:Q58ER0
        Length = 539

 Score = 138 (53.6 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
 Identities = 33/110 (30%), Positives = 60/110 (54%)

Query:   178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAA 237
             P R L V  L    TE  +  IF  +G +E +++++D++TGRS+G+ F+ F   + A  A
Sbjct:   263 PMR-LYVGSLHFNITEDMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAECAKKA 321

Query:   238 KDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTYEQLNNTQSELGS 287
              +   G E+ GR ++V   VT+R+   +   ++     ++L  T  +LG+
Sbjct:   322 LEQLNGFELAGRPMKVGH-VTERSDASSASSFLDN---DELERTGIDLGT 367

 Score = 59 (25.8 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
 Identities = 15/38 (39%), Positives = 22/38 (57%)

Query:    50 YRLSPARSGSA-GSIDDKKYRKSITRSRSGSPHRRSKR 86
             YR   ++S SA G  +++  +K  + SRS SP RR  R
Sbjct:    15 YRKGESKSSSANGHNEERSKKKRRSHSRSPSPGRRRSR 52

 Score = 46 (21.3 bits), Expect = 7.9e-07, Sum P(2) = 7.9e-07
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query:    58 GSAGSIDDKKYRK-SITRSRSGSPHRRSKRP 87
             G  G    + + K S  RSRS SP ++ K P
Sbjct:   107 GPGGKTGPQHFPKHSRKRSRSKSPFKKEKSP 137

 Score = 45 (20.9 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
 Identities = 13/41 (31%), Positives = 21/41 (51%)

Query:    56 RSGSAGSIDDKKYRKSITRSRSGSPHRRSKRPQVACGRDNG 96
             RS S G    ++ R+S +R R  S  +  KR + +  +D G
Sbjct:    50 RSRSGGRKKSRERRRSRSRERKPSRSKERKRSR-SRSKDRG 89


>UNIPROTKB|F1PRG0 [details] [associations]
            symbol:RBMX2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00600000084414 EMBL:AAEX03026906
            Ensembl:ENSCAFT00000029787 Uniprot:F1PRG0
        Length = 326

 Score = 150 (57.9 bits), Expect = 4.3e-08, P = 4.3e-08
 Identities = 32/76 (42%), Positives = 44/76 (57%)

Query:   186 GLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGME 245
             GL    TE  I  +FS+YG +  + +V D KTG+S+GFCF+ +E +     A D   G++
Sbjct:    41 GLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIK 100

Query:   246 IDGRQIRVDFSVTQRA 261
             I GR IRVD     RA
Sbjct:   101 IKGRTIRVDHVSNYRA 116


>FB|FBgn0033378 [details] [associations]
            symbol:tsu "tsunagi" species:7227 "Drosophila melanogaster"
            [GO:0003729 "mRNA binding" evidence=ISS;NAS] [GO:0007310 "oocyte
            dorsal/ventral axis specification" evidence=IMP] [GO:0007314
            "oocyte anterior/posterior axis specification" evidence=IMP]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0000226 "microtubule
            cytoskeleton organization" evidence=IMP] [GO:0007312 "oocyte
            nucleus migration involved in oocyte dorsal/ventral axis
            specification" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0007317 "regulation of pole plasm oskar mRNA localization"
            evidence=IMP;IPI] [GO:0006406 "mRNA export from nucleus"
            evidence=NAS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0045451 "pole plasm oskar mRNA localization" evidence=TAS]
            [GO:0046595 "establishment of pole plasm mRNA localization"
            evidence=TAS] [GO:0006396 "RNA processing" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007294
            "germarium-derived oocyte fate determination" evidence=IMP]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
            [GO:0035145 "exon-exon junction complex" evidence=IPI] [GO:0007173
            "epidermal growth factor receptor signaling pathway" evidence=IMP]
            InterPro:IPR000504 InterPro:IPR008111 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102 SMART:SM00360
            EMBL:AE013599 GO:GO:0005737 GO:GO:0007173 GO:GO:0000226
            GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006406
            GO:GO:0000398 GO:GO:0071013 GO:GO:0007312 eggNOG:COG0724
            GO:GO:0045451 GO:GO:0035145 GO:GO:0007317
            GeneTree:ENSGT00550000074641 PDB:1HL6 PDB:1OO0 PDB:1RK8 PDB:2X1G
            PDBsum:1HL6 PDBsum:1OO0 PDBsum:1RK8 PDBsum:2X1G KO:K12876
            OMA:WILFVTS EMBL:AF173550 EMBL:AY071005 RefSeq:NP_610454.2
            UniGene:Dm.19884 ProteinModelPortal:Q9V535 SMR:Q9V535
            DIP:DIP-24075N IntAct:Q9V535 MINT:MINT-816263 STRING:Q9V535
            PaxDb:Q9V535 PRIDE:Q9V535 EnsemblMetazoa:FBtr0088567 GeneID:35924
            KEGG:dme:Dmel_CG8781 UCSC:CG8781-RA CTD:110124 FlyBase:FBgn0033378
            InParanoid:Q9V535 OrthoDB:EOG4N02X6 PhylomeDB:Q9V535
            EvolutionaryTrace:Q9V535 GenomeRNAi:35924 NextBio:795852
            Bgee:Q9V535 GermOnline:CG8781 GO:GO:0046595 Uniprot:Q9V535
        Length = 165

 Score = 131 (51.2 bits), Expect = 4.4e-08, P = 4.4e-08
 Identities = 32/90 (35%), Positives = 50/90 (55%)

Query:   171 DGRENPQPSRCL-G--VFGLSIY--TTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCF 225
             D    P P R + G  +F  SI+    E +I   F  YG ++ + + +D +TG S+G+  
Sbjct:    59 DDELEPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYAL 118

Query:   226 VYFESRDDAAAAKDACTGMEIDGRQIRVDF 255
             V +E+   A AAK+A  G EI G+ I+VD+
Sbjct:   119 VEYETHKQALAAKEALNGAEIMGQTIQVDW 148


>TAIR|locus:2179624 [details] [associations]
            symbol:AT5G19030 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:CP002688 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00544212 RefSeq:NP_197404.2
            UniGene:At.31343 ProteinModelPortal:F4JZK9 SMR:F4JZK9
            EnsemblPlants:AT5G19030.1 GeneID:832022 KEGG:ath:AT5G19030
            OMA:RTISCVA PhylomeDB:F4JZK9 Uniprot:F4JZK9
        Length = 172

 Score = 131 (51.2 bits), Expect = 4.4e-08, P = 4.4e-08
 Identities = 28/80 (35%), Positives = 47/80 (58%)

Query:   176 PQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAA 235
             P     L V G S   +E ++  +FS++G V  V+++ + +T +S G+ +V+F S++DA 
Sbjct:    73 PSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQ 132

Query:   236 AAKDACTGMEIDGRQIRVDF 255
             +A +A  G   DGR I V F
Sbjct:   133 SAVEAMNGKFFDGRFILVKF 152


>WB|WBGene00011156 [details] [associations]
            symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
            GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
            RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
            IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
            GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
            WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
            Uniprot:O45713
        Length = 85

 Score = 131 (51.2 bits), Expect = 4.4e-08, P = 4.4e-08
 Identities = 27/66 (40%), Positives = 38/66 (57%)

Query:   191 TTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQ 250
             TTE  + + FS+ G V  V +V D +TGR RGF FV F     A  A D   G++ +GR 
Sbjct:    15 TTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQFNGVDFNGRA 74

Query:   251 IRVDFS 256
             +RV+ +
Sbjct:    75 LRVNLA 80


>UNIPROTKB|O45713 [details] [associations]
            symbol:R09B3.3 "Protein R09B3.3" species:6239
            "Caenorhabditis elegans" [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
            HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
            SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
            EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
            UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
            OMA:KRVHIPT NextBio:878159 Uniprot:O45713
        Length = 85

 Score = 131 (51.2 bits), Expect = 4.4e-08, P = 4.4e-08
 Identities = 27/66 (40%), Positives = 38/66 (57%)

Query:   191 TTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQ 250
             TTE  + + FS+ G V  V +V D +TGR RGF FV F     A  A D   G++ +GR 
Sbjct:    15 TTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQFNGVDFNGRA 74

Query:   251 IRVDFS 256
             +RV+ +
Sbjct:    75 LRVNLA 80


>POMBASE|SPAC19A8.13 [details] [associations]
            symbol:usp101 "U1 snRNP-associated protein Usp101
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000243
            "commitment complex" evidence=ISO] [GO:0000395 "mRNA 5'-splice site
            recognition" evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005685 "U1 snRNP"
            evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0030619 "U1
            snRNA binding" evidence=ISO] [GO:0045292 "mRNA cis splicing, via
            spliceosome" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC19A8.13
            GO:GO:0005829 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000166
            GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000243 eggNOG:COG0724
            GO:GO:0005685 GO:GO:0000395 KO:K11093 InterPro:IPR022023
            Pfam:PF12220 PIR:T37948 RefSeq:NP_593779.1 HSSP:P62995
            ProteinModelPortal:O13829 DIP:DIP-59803N STRING:O13829
            EnsemblFungi:SPAC19A8.13.1 GeneID:2542461 KEGG:spo:SPAC19A8.13
            HOGENOM:HOG000000970 OMA:YLPPVED OrthoDB:EOG4HMNKR NextBio:20803517
            GO:GO:0030619 Uniprot:O13829
        Length = 261

 Score = 147 (56.8 bits), Expect = 4.6e-08, P = 4.6e-08
 Identities = 41/124 (33%), Positives = 60/124 (48%)

Query:   178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAA 237
             P + + +  LS  T E  I   F++YGP+ER+ VV +  TG+S G+ FV FE   D   A
Sbjct:    98 PYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVA 157

Query:   238 KDACTGMEIDGRQIRVDFSV--TQRAHTPTP-GIYMGRPTYEQLNNTQSELGSLLSEKHA 294
               A  G+ ++GR+I VD     T +   P   G  +G   Y +    + E GS       
Sbjct:   158 YKASAGLMLNGRRIVVDVERGRTVKGWLPRKLGGGLGGRHYTK-ERPRRERGSRFRGDSG 216

Query:   295 IKGG 298
              +GG
Sbjct:   217 FRGG 220


>UNIPROTKB|J9P250 [details] [associations]
            symbol:RBMX2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00600000084414 OMA:HRHKRAR EMBL:AAEX03026906
            ProteinModelPortal:J9P250 Ensembl:ENSCAFT00000043973 Uniprot:J9P250
        Length = 341

 Score = 150 (57.9 bits), Expect = 4.8e-08, P = 4.8e-08
 Identities = 32/76 (42%), Positives = 44/76 (57%)

Query:   186 GLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGME 245
             GL    TE  I  +FS+YG +  + +V D KTG+S+GFCF+ +E +     A D   G++
Sbjct:    42 GLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIK 101

Query:   246 IDGRQIRVDFSVTQRA 261
             I GR IRVD     RA
Sbjct:   102 IKGRTIRVDHVSNYRA 117


>MGI|MGI:97286 [details] [associations]
            symbol:Ncl "nucleolin" species:10090 "Mus musculus"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
            "angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=ISO;IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005654
            "nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005938
            "cell cortex" evidence=ISO] [GO:0008022 "protein C-terminus
            binding" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
            evidence=ISO] [GO:0042162 "telomeric DNA binding" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:97286 GO:GO:0005938 GO:GO:0005654
            GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0001525
            GO:GO:0003723 GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724
            HOVERGEN:HBG002295 KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691
            HOGENOM:HOG000113885 OMA:KERDTRT OrthoDB:EOG45MN5J ChiTaRS:NCL
            EMBL:X07699 EMBL:AF318184 EMBL:AK050958 EMBL:AK083307 EMBL:AK144894
            EMBL:AK161706 EMBL:AK163275 EMBL:BC005460 EMBL:M22089
            IPI:IPI00317794 PIR:A29958 RefSeq:NP_035010.3 UniGene:Mm.154378
            UniGene:Mm.474153 ProteinModelPortal:P09405 SMR:P09405
            IntAct:P09405 STRING:P09405 PhosphoSite:P09405
            REPRODUCTION-2DPAGE:P09405 PaxDb:P09405 PRIDE:P09405
            Ensembl:ENSMUST00000027438 GeneID:17975 KEGG:mmu:17975
            UCSC:uc007bvl.1 InParanoid:P09405 NextBio:292933 PMAP-CutDB:P09405
            Bgee:P09405 CleanEx:MM_NCL Genevestigator:P09405
            GermOnline:ENSMUSG00000026234 Uniprot:P09405
        Length = 707

 Score = 154 (59.3 bits), Expect = 6.3e-08, P = 6.3e-08
 Identities = 37/80 (46%), Positives = 50/80 (62%)

Query:   177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAA 236
             QPS+ L V GLS  TTE+ +   F   G V R  +V D +TG S+GF FV F S +DA A
Sbjct:   566 QPSKTLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKA 622

Query:   237 AKDACTGMEIDGRQIRVDFS 256
             AK+A    EIDG ++ +D++
Sbjct:   623 AKEAMEDGEIDGNKVTLDWA 642


>UNIPROTKB|P19338 [details] [associations]
            symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005654
            "nucleoplasm" evidence=IEA] [GO:0008022 "protein C-terminus
            binding" evidence=IPI] [GO:0001525 "angiogenesis" evidence=IDA]
            [GO:0005938 "cell cortex" evidence=IDA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0042162 "telomeric DNA binding"
            evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0030529
            "ribonucleoprotein complex" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005938
            Pathway_Interaction_DB:telomerasepathway GO:GO:0005654
            GO:GO:0005730 Pathway_Interaction_DB:aurora_b_pathway GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0003723 GO:GO:0030529
            GO:GO:0042162 EMBL:AC017104 eggNOG:COG0724 HOVERGEN:HBG002295
            KO:K11294 CTD:4691 HOGENOM:HOG000113885 EMBL:M60858 EMBL:AK091742
            IPI:IPI00604620 PIR:A35804 PIR:S53728 RefSeq:NP_005372.2
            UniGene:Hs.79110 PDB:2FC8 PDB:2FC9 PDB:2KRR PDBsum:2FC8 PDBsum:2FC9
            PDBsum:2KRR ProteinModelPortal:P19338 SMR:P19338 DIP:DIP-89N
            IntAct:P19338 MINT:MINT-4999081 STRING:P19338 PhosphoSite:P19338
            DMDM:90110781 DOSAC-COBS-2DPAGE:P19338 SWISS-2DPAGE:P19338
            PaxDb:P19338 PRIDE:P19338 DNASU:4691 Ensembl:ENST00000322723
            GeneID:4691 KEGG:hsa:4691 UCSC:uc002vru.3 GeneCards:GC02M232318
            HGNC:HGNC:7667 HPA:CAB004210 HPA:HPA023981 MIM:164035
            neXtProt:NX_P19338 PharmGKB:PA31469 InParanoid:P19338 OMA:KERDTRT
            OrthoDB:EOG45MN5J PhylomeDB:P19338 ChiTaRS:NCL
            EvolutionaryTrace:P19338 GenomeRNAi:4691 NextBio:18090
            PMAP-CutDB:P19338 ArrayExpress:P19338 Bgee:P19338 CleanEx:HS_NCL
            Genevestigator:P19338 GermOnline:ENSG00000115053 Uniprot:P19338
        Length = 710

 Score = 154 (59.3 bits), Expect = 6.3e-08, P = 6.3e-08
 Identities = 37/80 (46%), Positives = 50/80 (62%)

Query:   177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAA 236
             QPS+ L V GLS  TTE+ +   F   G V R  +V D +TG S+GF FV F S +DA A
Sbjct:   569 QPSKTLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKA 625

Query:   237 AKDACTGMEIDGRQIRVDFS 256
             AK+A    EIDG ++ +D++
Sbjct:   626 AKEAMEDGEIDGNKVTLDWA 645


>UNIPROTKB|Q4R4J7 [details] [associations]
            symbol:NCL "Nucleolin" species:9541 "Macaca fascicularis"
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
            "ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
            DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
            GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 OrthoDB:EOG45MN5J
            EMBL:AB169897 EMBL:AB168220 ProteinModelPortal:Q4R4J7 SMR:Q4R4J7
            PRIDE:Q4R4J7 Uniprot:Q4R4J7
        Length = 711

 Score = 154 (59.3 bits), Expect = 6.3e-08, P = 6.3e-08
 Identities = 37/80 (46%), Positives = 50/80 (62%)

Query:   177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAA 236
             QPS+ L V GLS  TTE+ +   F   G V R  +V D +TG S+GF FV F S +DA A
Sbjct:   570 QPSKTLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKA 626

Query:   237 AKDACTGMEIDGRQIRVDFS 256
             AK+A    EIDG ++ +D++
Sbjct:   627 AKEAMEDGEIDGNKVTLDWA 646


>UNIPROTKB|Q5RF26 [details] [associations]
            symbol:NCL "Nucleolin" species:9601 "Pongo abelii"
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
            "ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
            DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
            GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 KO:K11294 CTD:4691
            EMBL:CR857335 RefSeq:NP_001127178.1 UniGene:Pab.18146
            ProteinModelPortal:Q5RF26 SMR:Q5RF26 GeneID:100174230
            KEGG:pon:100174230 InParanoid:Q5RF26 Uniprot:Q5RF26
        Length = 712

 Score = 154 (59.3 bits), Expect = 6.4e-08, P = 6.4e-08
 Identities = 37/80 (46%), Positives = 50/80 (62%)

Query:   177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAA 236
             QPS+ L V GLS  TTE+ +   F   G V R  +V D +TG S+GF FV F S +DA A
Sbjct:   571 QPSKTLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKA 627

Query:   237 AKDACTGMEIDGRQIRVDFS 256
             AK+A    EIDG ++ +D++
Sbjct:   628 AKEAMEDGEIDGNKVTLDWA 647


>RGD|3153 [details] [associations]
            symbol:Ncl "nucleolin" species:10116 "Rattus norvegicus"
          [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
          "angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
          evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO;ISS] [GO:0005634
          "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
          [GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
          evidence=IEA] [GO:0005938 "cell cortex" evidence=ISO] [GO:0008022
          "protein C-terminus binding" evidence=ISO] [GO:0030529
          "ribonucleoprotein complex" evidence=ISO;ISS] [GO:0042162 "telomeric
          DNA binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
          Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:3153 GO:GO:0005737
          GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
          GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
          OrthoDB:EOG45MN5J EMBL:M55022 EMBL:M55015 EMBL:M55017 EMBL:M55020
          EMBL:M22090 IPI:IPI00882501 PIR:JH0148 UniGene:Rn.144561
          UniGene:Rn.7735 ProteinModelPortal:P13383 SMR:P13383 IntAct:P13383
          STRING:P13383 PhosphoSite:P13383 PRIDE:P13383 UCSC:RGD:3153
          InParanoid:P13383 ArrayExpress:P13383 Genevestigator:P13383
          GermOnline:ENSRNOG00000018273 Uniprot:P13383
        Length = 713

 Score = 154 (59.3 bits), Expect = 6.4e-08, P = 6.4e-08
 Identities = 37/80 (46%), Positives = 50/80 (62%)

Query:   177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAA 236
             QPS+ L V GLS  TTE+ +   F   G V R  +V D +TG S+GF FV F S +DA A
Sbjct:   572 QPSKTLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKA 628

Query:   237 AKDACTGMEIDGRQIRVDFS 256
             AK+A    EIDG ++ +D++
Sbjct:   629 AKEAMEDGEIDGNKVTLDWA 648


>UNIPROTKB|P08199 [details] [associations]
            symbol:NCL "Nucleolin" species:10036 "Mesocricetus auratus"
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
            "ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
            DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
            GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 EMBL:M15825
            PIR:A27441 PDB:1FJ7 PDB:1FJC PDB:1FJE PDB:1RKJ PDBsum:1FJ7
            PDBsum:1FJC PDBsum:1FJE PDBsum:1RKJ ProteinModelPortal:P08199
            SMR:P08199 PRIDE:P08199 EvolutionaryTrace:P08199 Uniprot:P08199
        Length = 714

 Score = 154 (59.3 bits), Expect = 6.4e-08, P = 6.4e-08
 Identities = 37/80 (46%), Positives = 50/80 (62%)

Query:   177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAA 236
             QPS+ L V GLS  TTE+ +   F   G V R  +V D +TG S+GF FV F S +DA A
Sbjct:   569 QPSKTLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKA 625

Query:   237 AKDACTGMEIDGRQIRVDFS 256
             AK+A    EIDG ++ +D++
Sbjct:   626 AKEAMEDGEIDGNKVTLDWA 645


>UNIPROTKB|Q5U328 [details] [associations]
            symbol:Ncl "Nucleolin, isoform CRA_c" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:3153 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 HOVERGEN:HBG002295 KO:K11294
            GeneTree:ENSGT00550000074656 CTD:4691 HOGENOM:HOG000113885
            UniGene:Rn.144561 UniGene:Rn.7735 EMBL:CH474004 OMA:ENAMEIR
            EMBL:BC085751 IPI:IPI00231827 RefSeq:NP_036881.2 SMR:Q5U328
            STRING:Q5U328 Ensembl:ENSRNOT00000024712 GeneID:25135
            KEGG:rno:25135 InParanoid:Q5U328 NextBio:605553
            Genevestigator:Q5U328 Uniprot:Q5U328
        Length = 714

 Score = 154 (59.3 bits), Expect = 6.4e-08, P = 6.4e-08
 Identities = 37/80 (46%), Positives = 50/80 (62%)

Query:   177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAA 236
             QPS+ L V GLS  TTE+ +   F   G V R  +V D +TG S+GF FV F S +DA A
Sbjct:   573 QPSKTLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKA 629

Query:   237 AKDACTGMEIDGRQIRVDFS 256
             AK+A    EIDG ++ +D++
Sbjct:   630 AKEAMEDGEIDGNKVTLDWA 649


>UNIPROTKB|F1Q0B0 [details] [associations]
            symbol:NCL "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0042162 "telomeric DNA binding" evidence=IEA]
            [GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008022
            "protein C-terminus binding" evidence=IEA] [GO:0005938 "cell
            cortex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005938 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0030529 GO:GO:0042162
            KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691 OMA:KERDTRT
            EMBL:AAEX03014432 RefSeq:XP_850477.2 Ensembl:ENSCAFT00000017622
            GeneID:608445 KEGG:cfa:608445 Uniprot:F1Q0B0
        Length = 715

 Score = 154 (59.3 bits), Expect = 6.4e-08, P = 6.4e-08
 Identities = 37/80 (46%), Positives = 50/80 (62%)

Query:   177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAA 236
             QPS+ L V GLS  TTE+ +   F   G V R  +V D +TG S+GF FV F S +DA A
Sbjct:   574 QPSKTLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKA 630

Query:   237 AKDACTGMEIDGRQIRVDFS 256
             AK+A    EIDG ++ +D++
Sbjct:   631 AKEAMEDGEIDGNKVTLDWA 650


>UNIPROTKB|I3LRH2 [details] [associations]
            symbol:LOC100737210 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
            GeneTree:ENSGT00550000074656 OMA:RLEYSQS RefSeq:XP_003133770.2
            Ensembl:ENSSSCT00000032422 GeneID:100519984 KEGG:ssc:100519984
            Uniprot:I3LRH2
        Length = 724

 Score = 154 (59.3 bits), Expect = 6.5e-08, P = 6.5e-08
 Identities = 36/80 (45%), Positives = 50/80 (62%)

Query:   177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAA 236
             QPS+ L V GLS  TTE+ +   F   G + R  +V D +TG S+GF FV F S +DA A
Sbjct:   582 QPSKTLFVKGLSEETTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNSEEDAKA 638

Query:   237 AKDACTGMEIDGRQIRVDFS 256
             AK+A    EIDG ++ +D++
Sbjct:   639 AKEAMEDGEIDGNKVTLDWA 658


>UNIPROTKB|G3MXT4 [details] [associations]
            symbol:G3MXT4 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
            Ensembl:ENSBTAT00000065413 Uniprot:G3MXT4
        Length = 630

 Score = 153 (58.9 bits), Expect = 6.9e-08, P = 6.9e-08
 Identities = 36/80 (45%), Positives = 50/80 (62%)

Query:   177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAA 236
             QPS+ L V GLS  TTE+ +   F   G + R  +V D +TG S+GF FV F S +DA A
Sbjct:   489 QPSKTLFVKGLSEDTTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNSEEDAKA 545

Query:   237 AKDACTGMEIDGRQIRVDFS 256
             AK+A    EIDG ++ +D++
Sbjct:   546 AKEAMEDGEIDGNKVTLDWA 565


>UNIPROTKB|G3X7M4 [details] [associations]
            symbol:G3X7M4 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
            Ensembl:ENSBTAT00000038502 OMA:ENAMEIR Uniprot:G3X7M4
        Length = 630

 Score = 153 (58.9 bits), Expect = 6.9e-08, P = 6.9e-08
 Identities = 36/80 (45%), Positives = 50/80 (62%)

Query:   177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAA 236
             QPS+ L V GLS  TTE+ +   F   G + R  +V D +TG S+GF FV F S +DA A
Sbjct:   489 QPSKTLFVKGLSEDTTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNSEEDAKA 545

Query:   237 AKDACTGMEIDGRQIRVDFS 256
             AK+A    EIDG ++ +D++
Sbjct:   546 AKEAMEDGEIDGNKVTLDWA 565


>TAIR|locus:2168133 [details] [associations]
            symbol:AT5G59860 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00539298
            RefSeq:NP_200794.1 UniGene:At.66722 ProteinModelPortal:F4JXD2
            SMR:F4JXD2 EnsemblPlants:AT5G59860.1 GeneID:836108
            KEGG:ath:AT5G59860 Uniprot:F4JXD2
        Length = 157

 Score = 129 (50.5 bits), Expect = 7.2e-08, P = 7.2e-08
 Identities = 32/88 (36%), Positives = 47/88 (53%)

Query:   181 CLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDA 240
             C+   GLS YTT+Q +  +F+   P  R+  + D +T R +GF F+ FES DDA  A  A
Sbjct:    72 CVSNSGLSAYTTDQSLRQLFA---PFARL--IKDQQTQRPKGFGFITFESEDDAQKALKA 126

Query:   241 CTGMEIDGRQIRVDFSVTQRAHTPTPGI 268
               G  ++GR I V+    +    PT  +
Sbjct:   127 LNGKIVNGRLIFVE--TAKEVEAPTTSL 152


>TAIR|locus:2167649 [details] [associations]
            symbol:CBP20 "CAP-binding protein 20" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0000339 "RNA cap
            binding" evidence=IDA] [GO:0016070 "RNA metabolic process"
            evidence=TAS] [GO:0005845 "mRNA cap binding complex" evidence=TAS]
            [GO:0000394 "RNA splicing, via endonucleolytic cleavage and
            ligation" evidence=RCA;IMP] [GO:0031053 "primary miRNA processing"
            evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=RCA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=RCA] [GO:0009086 "methionine biosynthetic
            process" evidence=RCA] [GO:0030422 "production of siRNA involved in
            RNA interference" evidence=RCA] [GO:0035196 "production of miRNAs
            involved in gene silencing by miRNA" evidence=RCA] [GO:0043687
            "post-translational protein modification" evidence=RCA] [GO:0045893
            "positive regulation of transcription, DNA-dependent" evidence=RCA]
            InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0005737 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
            Gene3D:3.30.70.330 EMBL:AB005239 GO:GO:0005845 eggNOG:COG0724
            GO:GO:0006370 GO:GO:0031053 GO:GO:0000339 HOGENOM:HOG000217589
            PANTHER:PTHR18847 GO:GO:0000394 EMBL:AF140219 EMBL:BT004813
            EMBL:AK227850 IPI:IPI00549008 RefSeq:NP_001078705.1
            RefSeq:NP_199233.1 UniGene:At.23549 HSSP:P52298
            ProteinModelPortal:Q9XFD1 SMR:Q9XFD1 IntAct:Q9XFD1 STRING:Q9XFD1
            PaxDb:Q9XFD1 PRIDE:Q9XFD1 EnsemblPlants:AT5G44200.1
            EnsemblPlants:AT5G44200.2 GeneID:834443 KEGG:ath:AT5G44200
            TAIR:At5g44200 InParanoid:Q9XFD1 KO:K12883 OMA:YISGTIL
            PhylomeDB:Q9XFD1 ProtClustDB:CLSN2687230 Genevestigator:Q9XFD1
            Uniprot:Q9XFD1
        Length = 257

 Score = 145 (56.1 bits), Expect = 7.5e-08, P = 7.5e-08
 Identities = 29/69 (42%), Positives = 43/69 (62%)

Query:   187 LSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEI 246
             +S YTTE+Q+  +FS+ G ++++ + +D  T    GFCFV F SR+D   A    +G  +
Sbjct:    41 VSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKYISGTIL 100

Query:   247 DGRQIRVDF 255
             D R IRVDF
Sbjct:   101 DDRPIRVDF 109


>UNIPROTKB|G3X6K3 [details] [associations]
            symbol:LOC534630 "Uncharacterized protein" species:9913
            "Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13107
            GeneTree:ENSGT00600000084414 OMA:VFSQNRY EMBL:DAAA02072184
            RefSeq:NP_001193477.1 UniGene:Bt.88830 Ensembl:ENSBTAT00000008205
            GeneID:534630 KEGG:bta:534630 NextBio:20876482 Uniprot:G3X6K3
        Length = 330

 Score = 148 (57.2 bits), Expect = 7.5e-08, P = 7.5e-08
 Identities = 30/69 (43%), Positives = 42/69 (60%)

Query:   186 GLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGME 245
             GL    TE  I  +FS+YG +  + +V D KTG+S+GFCF+ +E +     A D   G++
Sbjct:    42 GLPYELTEGDIICVFSQYGEIVNINLVWDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIK 101

Query:   246 IDGRQIRVD 254
             I GR IRVD
Sbjct:   102 IKGRTIRVD 110


>TAIR|locus:2025092 [details] [associations]
            symbol:SR45a "serine/arginine rich-like protein 45a"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0008380
            "RNA splicing" evidence=NAS] [GO:0009644 "response to high light
            intensity" evidence=IMP] [GO:0043484 "regulation of RNA splicing"
            evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0008380
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0009644
            GO:GO:0030529 GO:GO:0043484 eggNOG:COG0724 HSSP:Q14103
            EMBL:BT005797 IPI:IPI00529615 RefSeq:NP_563787.2 UniGene:At.24511
            ProteinModelPortal:Q84TH4 SMR:Q84TH4 STRING:Q84TH4
            EnsemblPlants:AT1G07350.1 GeneID:837246 KEGG:ath:AT1G07350
            TAIR:At1g07350 HOGENOM:HOG000239942 InParanoid:Q84TH4 OMA:SYSPYYR
            ProtClustDB:CLSN2918464 ArrayExpress:Q84TH4 Genevestigator:Q84TH4
            Uniprot:Q84TH4
        Length = 382

 Score = 145 (56.1 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
 Identities = 40/101 (39%), Positives = 53/101 (52%)

Query:   174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDD 233
             ENP  S  L V GLS   TE+ +   F+K G V  V +V+D  T  SRGF F+  +S  D
Sbjct:    71 ENPGNS--LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGD 128

Query:   234 AAAAKDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPT 274
             A     +     + GR I V+ +  +R  TPTPG Y+G  T
Sbjct:   129 ANRCIRSLDHSVLQGRVITVEKARRRRGRTPTPGKYLGLRT 169

 Score = 43 (20.2 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
 Identities = 15/41 (36%), Positives = 21/41 (51%)

Query:    42 QTSSDQCYYRLSPARSGSAGSIDDKKYRKSITRSRSGSPHR 82
             +  S   Y R S  R   + S  DK+  +S++RS S SP R
Sbjct:    26 ENRSPMSYSRRS--RYSPSLSPYDKRRGRSVSRSLSRSPTR 64

 Score = 37 (18.1 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
 Identities = 13/43 (30%), Positives = 19/43 (44%)

Query:    18 DGKVPVWYLCRSHVSGRLLPKEPAQTSSDQCYYRLSPARSGSA 60
             + + P+ Y  RS  S  L P +  +  S       SP RS S+
Sbjct:    26 ENRSPMSYSRRSRYSPSLSPYDKRRGRSVSRSLSRSPTRSVSS 68


>UNIPROTKB|G5E5I0 [details] [associations]
            symbol:RBMX2 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00600000084414 OMA:HRHKRAR EMBL:DAAA02067479
            Ensembl:ENSBTAT00000019649 Uniprot:G5E5I0
        Length = 338

 Score = 148 (57.2 bits), Expect = 8.0e-08, P = 8.0e-08
 Identities = 30/69 (43%), Positives = 42/69 (60%)

Query:   186 GLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGME 245
             GL    TE  I  +FS+YG +  + +V D KTG+S+GFCF+ +E +     A D   G++
Sbjct:    42 GLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIK 101

Query:   246 IDGRQIRVD 254
             I GR IRVD
Sbjct:   102 IKGRTIRVD 110


>UNIPROTKB|E1B8K6 [details] [associations]
            symbol:NCL "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
            GeneTree:ENSGT00550000074656 CTD:4691 EMBL:DAAA02006195
            IPI:IPI00971535 RefSeq:NP_001193589.1 UniGene:Bt.107977
            UniGene:Bt.108558 UniGene:Bt.7403 UniGene:Bt.79166
            ProteinModelPortal:E1B8K6 IntAct:E1B8K6 PRIDE:E1B8K6
            Ensembl:ENSBTAT00000021529 GeneID:497013 KEGG:bta:497013
            OMA:RLEYSQS NextBio:20865826 Uniprot:E1B8K6
        Length = 720

 Score = 153 (58.9 bits), Expect = 8.3e-08, P = 8.3e-08
 Identities = 36/80 (45%), Positives = 50/80 (62%)

Query:   177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAA 236
             QPS+ L V GLS  TTE+ +   F   G + R  +V D +TG S+GF FV F S +DA A
Sbjct:   579 QPSKTLFVKGLSEDTTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNSEEDAKA 635

Query:   237 AKDACTGMEIDGRQIRVDFS 256
             AK+A    EIDG ++ +D++
Sbjct:   636 AKEAMEDGEIDGNKVTLDWA 655


>UNIPROTKB|H0YAP2 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519622
            Uniprot:H0YAP2
        Length = 131

 Score = 128 (50.1 bits), Expect = 9.3e-08, P = 9.3e-08
 Identities = 25/61 (40%), Positives = 41/61 (67%)

Query:   193 EQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIR 252
             ++++  +F K+GP   V+V+ D ++G+S+GF FV FE  +DA  A D   G E++G+QI 
Sbjct:     2 DERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 60

Query:   253 V 253
             V
Sbjct:    61 V 61


>TAIR|locus:2039590 [details] [associations]
            symbol:AT2G27330 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT025704
            IPI:IPI00525470 RefSeq:NP_565646.2 UniGene:At.38782
            ProteinModelPortal:Q1ECN0 SMR:Q1ECN0 IntAct:Q1ECN0
            EnsemblPlants:AT2G27330.1 GeneID:817276 KEGG:ath:AT2G27330
            TAIR:At2g27330 eggNOG:NOG290837 InParanoid:Q1ECN0 OMA:IMDKIRC
            PhylomeDB:Q1ECN0 ProtClustDB:CLSN2918107 Genevestigator:Q1ECN0
            Uniprot:Q1ECN0
        Length = 116

 Score = 128 (50.1 bits), Expect = 9.3e-08, P = 9.3e-08
 Identities = 29/86 (33%), Positives = 48/86 (55%)

Query:   179 SRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAK 238
             S  L V G+S  +TE+ +   FS+YG V +V+V++D    R +GF +V F S+++A  A 
Sbjct:    20 SSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL 79

Query:   239 DACTGMEIDGRQIRVDFSVTQRAHTP 264
                    +DGR + +D +   + H P
Sbjct:    80 LELNAQLVDGRVVILDTTKAAK-HNP 104


>WB|WBGene00011059 [details] [associations]
            symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
            EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
            SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
            GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
            WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
            Uniprot:O62337
        Length = 84

 Score = 128 (50.1 bits), Expect = 9.3e-08, P = 9.3e-08
 Identities = 25/65 (38%), Positives = 38/65 (58%)

Query:   192 TEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQI 251
             TE++I + F+  G V  V +V D +TGR RGF FV F     A  A +   G+  +GR +
Sbjct:    18 TEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQLNGVAFNGRNL 77

Query:   252 RVDFS 256
             RV+++
Sbjct:    78 RVNYA 82


>UNIPROTKB|K7GQZ8 [details] [associations]
            symbol:LOC100515986 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00550000074641 EMBL:CU861981
            Ensembl:ENSSSCT00000036547 Uniprot:K7GQZ8
        Length = 88

 Score = 127 (49.8 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 24/69 (34%), Positives = 42/69 (60%)

Query:   192 TEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQI 251
             TE+Q+  IFS+ GPV    +V D +TG+ +G+ F  ++ ++ A +A     G E  GR +
Sbjct:     9 TEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRAL 68

Query:   252 RVDFSVTQR 260
             RVD + +++
Sbjct:    69 RVDNAASEK 77


>UNIPROTKB|E9PTI5 [details] [associations]
            symbol:E9PTI5 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00550000074656 IPI:IPI01007589
            Ensembl:ENSRNOT00000011480 Uniprot:E9PTI5
        Length = 567

 Score = 150 (57.9 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 36/80 (45%), Positives = 49/80 (61%)

Query:   177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAA 236
             QPS+ L V GLS  TTE+ +   F   G V R  +V D +TG S+GF FV F S +DA  
Sbjct:   426 QPSKTLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKT 482

Query:   237 AKDACTGMEIDGRQIRVDFS 256
             AK+A    EIDG ++ +D++
Sbjct:   483 AKEAMEDGEIDGNKVTLDWA 502


>TAIR|locus:2079276 [details] [associations]
            symbol:ATRZ-1A species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA;IDA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0009409 "response to cold" evidence=IMP] [GO:0009631 "cold
            acclimation" evidence=IGI] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005829
            GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
            GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0009631
            GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP001298 HOGENOM:HOG000276232
            UniGene:At.48707 HSSP:Q61474 KO:K12885 EMBL:AY054613 EMBL:AF424613
            EMBL:AY072457 EMBL:AK221725 EMBL:AK227088 IPI:IPI00530350
            RefSeq:NP_189273.1 ProteinModelPortal:Q9LIN3 SMR:Q9LIN3
            IntAct:Q9LIN3 STRING:Q9LIN3 PRIDE:Q9LIN3 EnsemblPlants:AT3G26420.1
            GeneID:822246 KEGG:ath:AT3G26420 TAIR:At3g26420 InParanoid:Q9LIN3
            OMA:SSKDDRY PhylomeDB:Q9LIN3 ProtClustDB:CLSN2723027
            Genevestigator:Q9LIN3 Uniprot:Q9LIN3
        Length = 245

 Score = 142 (55.0 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 32/81 (39%), Positives = 49/81 (60%)

Query:   174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDD 233
             E+P+  RC  + GL+  T+++ +   F KYG +   +VV+D  +GRSRGF F+ F+ +  
Sbjct:     3 EDPE-YRCF-IGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60

Query:   234 AAAAKDACTGMEIDGRQIRVD 254
                A  A  GM++DGR I VD
Sbjct:    61 MDEAIAAMNGMDLDGRTITVD 81


>UNIPROTKB|G3MYJ0 [details] [associations]
            symbol:G3MYJ0 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
            Ensembl:ENSBTAT00000064073 Uniprot:G3MYJ0
        Length = 625

 Score = 153 (58.9 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
 Identities = 36/80 (45%), Positives = 50/80 (62%)

Query:   177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAA 236
             QPS+ L V GLS  TTE+ +   F   G + R  +V D +TG S+GF FV F S +DA A
Sbjct:   484 QPSKTLFVKGLSEDTTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNSEEDAKA 540

Query:   237 AKDACTGMEIDGRQIRVDFS 256
             AK+A    EIDG ++ +D++
Sbjct:   541 AKEAMEDGEIDGNKVTLDWA 560

 Score = 38 (18.4 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
 Identities = 14/45 (31%), Positives = 20/45 (44%)

Query:    37 PKEPAQTSSDQCYYRLSP-----ARSGSAGSIDDKKYRKSITRSR 76
             PKE  + S D+   R +P     A SG  G+    K  K+   +R
Sbjct:    21 PKEVEEDSEDEEIKRATPGKAVVATSGKKGAASPGKGAKNGKNAR 65


>UNIPROTKB|G4MR34 [details] [associations]
            symbol:MGG_09885 "Cleavage stimulation factor 64-kDa
            subunit" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:CM001231 KO:K14407 InterPro:IPR025742
            InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 RefSeq:XP_003709978.1
            ProteinModelPortal:G4MR34 SMR:G4MR34 EnsemblFungi:MGG_09885T0
            GeneID:2680929 KEGG:mgr:MGG_09885 Uniprot:G4MR34
        Length = 305

 Score = 144 (55.7 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 43/118 (36%), Positives = 61/118 (51%)

Query:   178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAA 237
             PSR + V  +    +E+QI  IFS+ G V    +V D +TG+ +GF F  +   D AA+A
Sbjct:     6 PSRVVFVGNIPYGLSEEQITDIFSRAGKVLNFRLVYDRETGKPKGFGFAEYPDNDSAASA 65

Query:   238 KDACTGMEIDGRQIRVDFSVTQRAHTPTP------GIY-MGRPTYEQLNNTQSELGSL 288
                    EI GR++RVDFS  ++  T  P      G    G P+Y+Q    Q E+ SL
Sbjct:    66 VRNLNDTEIMGRKLRVDFS-NEKPSTNDPDDGPPGGANGSGAPSYQQ----QQEVPSL 118


>ZFIN|ZDB-GENE-050626-88 [details] [associations]
            symbol:rbmx2 "RNA binding motif protein, X-linked 2"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0008150 "biological_process" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-050626-88 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GeneTree:ENSGT00600000084414 EMBL:AL935199
            IPI:IPI00505218 Ensembl:ENSDART00000143373 Bgee:F1RAH8
            Uniprot:F1RAH8
        Length = 450

 Score = 147 (56.8 bits), Expect = 1.9e-07, P = 1.9e-07
 Identities = 32/83 (38%), Positives = 44/83 (53%)

Query:   186 GLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGME 245
             G     TE  I  +FS+YG +  + +V D KTG+S+GFCF+ +E +     A D   G++
Sbjct:    42 GFPYELTEGDIICVFSQYGEIANINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIK 101

Query:   246 IDGRQIRVDFSVTQRAHTPTPGI 268
             I GR IRVD     R    T  I
Sbjct:   102 IKGRTIRVDHVANYRPPKDTDDI 124


>GENEDB_PFALCIPARUM|PF13_0122 [details] [associations]
            symbol:PF13_0122 "cyclophilin, putative"
            species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
            activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
            GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
            EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
            EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
            Uniprot:C0H5C7
        Length = 125

 Score = 125 (49.1 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 27/80 (33%), Positives = 46/80 (57%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L V G+     E+ +  IFS +G +  +EV ++  T ++RGF FV +   DDA  A    
Sbjct:    10 LFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDAKHALYNM 69

Query:   242 TGMEIDGRQIRVDFSVTQRA 261
                E++G++I V++S T++A
Sbjct:    70 NNFELNGKRIHVNYSKTKKA 89


>UNIPROTKB|C0H5C7 [details] [associations]
            symbol:PF13_0122 "RRM containing cyclophilin" species:36329
            "Plasmodium falciparum 3D7" [GO:0000413 "protein peptidyl-prolyl
            isomerization" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
            activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
            GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
            EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
            EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
            Uniprot:C0H5C7
        Length = 125

 Score = 125 (49.1 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 27/80 (33%), Positives = 46/80 (57%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L V G+     E+ +  IFS +G +  +EV ++  T ++RGF FV +   DDA  A    
Sbjct:    10 LFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDAKHALYNM 69

Query:   242 TGMEIDGRQIRVDFSVTQRA 261
                E++G++I V++S T++A
Sbjct:    70 NNFELNGKRIHVNYSKTKKA 89


>TAIR|locus:2172144 [details] [associations]
            symbol:AT5G54580 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0005739
            "mitochondrion" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB016879 HOGENOM:HOG000276232
            HSSP:Q61474 UniGene:At.52694 EMBL:AY072101 EMBL:AY096589
            EMBL:AY085234 IPI:IPI00521049 RefSeq:NP_200269.1 UniGene:At.20805
            ProteinModelPortal:Q9FIU6 SMR:Q9FIU6 IntAct:Q9FIU6 PaxDb:Q9FIU6
            PRIDE:Q9FIU6 EnsemblPlants:AT5G54580.1 GeneID:835546
            KEGG:ath:AT5G54580 TAIR:At5g54580 eggNOG:NOG324885
            InParanoid:Q9FIU6 OMA:IKGMDGK PhylomeDB:Q9FIU6
            ProtClustDB:CLSN2696829 ArrayExpress:Q9FIU6 Genevestigator:Q9FIU6
            Uniprot:Q9FIU6
        Length = 156

 Score = 125 (49.1 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 33/104 (31%), Positives = 54/104 (51%)

Query:   173 RENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRD 232
             R   +PS  L V GLS  TT + +   F+++G V   +VV D  +G S+GF FV + + +
Sbjct:    49 RPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLE 108

Query:   233 DAAAAKDACTGMEIDGRQIRVDFS-VTQRAHTPTPGIYMGRPTY 275
             D+A       G  +DG  I  +++   +++ +  P   M RP Y
Sbjct:   109 DSAKGIAGMDGKFLDGWVIFAEYARPREQSQSYQPQNNMSRPPY 152


>UNIPROTKB|A9UMT9 [details] [associations]
            symbol:LOC100135403 "LOC100135403 protein" species:8364
            "Xenopus (Silurana) tropicalis" [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
            proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISS] [GO:0048025
            "negative regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISS] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
            GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
            GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
            GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081
            EMBL:BC157792 UniGene:Str.67350 ProteinModelPortal:A9UMT9
            STRING:A9UMT9 Uniprot:A9UMT9
        Length = 375

 Score = 145 (56.1 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 39/106 (36%), Positives = 54/106 (50%)

Query:   174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDD 233
             E  +P + L + GL+  T E+ +  +F KYG V  V ++ D +T +SRGF FV FES  D
Sbjct:     3 EADRPGK-LFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPAD 61

Query:   234 AAAAKDACTGMEIDGRQIRVD------FSVTQRAHTPTPGIYMGRP 273
             A  A     G  +DG+ I+V+      FS   R   P P    G P
Sbjct:    62 AKDAARELNGKALDGKPIKVEQATKPSFSAPSRRGPPPPPRSRGPP 107


>UNIPROTKB|I3LH22 [details] [associations]
            symbol:LOC100514264 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:CU915617
            Ensembl:ENSSSCT00000023009 OMA:QALEDHI Uniprot:I3LH22
        Length = 161

 Score = 124 (48.7 bits), Expect = 2.5e-07, P = 2.5e-07
 Identities = 28/73 (38%), Positives = 41/73 (56%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L V GL+  + +Q +    S + P+  V +V D +T RSRGF F+ F + + A+    A 
Sbjct:     8 LFVGGLNFNSDKQALEDHISSFRPISEVVIVKDRETQRSRGFGFITFTNPEHASNVMRAM 67

Query:   242 TGMEIDGRQIRVD 254
              G  +DGRQI VD
Sbjct:    68 NGESLDGRQIHVD 80


>UNIPROTKB|Q60A61 [details] [associations]
            symbol:MCA1010 "RNA-binding protein" species:243233
            "Methylococcus capsulatus str. Bath" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
            GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
            ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
            PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
        Length = 95

 Score = 124 (48.7 bits), Expect = 2.5e-07, P = 2.5e-07
 Identities = 29/73 (39%), Positives = 40/73 (54%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L V  L+    +  +   F+ YG V+  +VV+D  TGRSRGF FV   S  +A AA    
Sbjct:     5 LYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIAGL 64

Query:   242 TGMEIDGRQIRVD 254
              G E+DGR + V+
Sbjct:    65 NGKEMDGRNLMVN 77


>UNIPROTKB|H0YBQ4 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
            Uniprot:H0YBQ4
        Length = 258

 Score = 128 (50.1 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
 Identities = 25/61 (40%), Positives = 41/61 (67%)

Query:   193 EQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIR 252
             ++++  +F K+GP   V+V+ D ++G+S+GF FV FE  +DA  A D   G E++G+QI 
Sbjct:    37 DERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 95

Query:   253 V 253
             V
Sbjct:    96 V 96

 Score = 49 (22.3 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
 Identities = 17/53 (32%), Positives = 26/53 (49%)

Query:   276 EQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIXXXX-XXXXXXMTEMSGNGRI 327
             E+L    S  G++ S K  ++GG+  + FG +           +TEM  NGRI
Sbjct:   141 ERLRKEFSPFGTITSAKVMMEGGR-SKGFGFVCFSSPEEATKAVTEM--NGRI 190


>TAIR|locus:2049359 [details] [associations]
            symbol:GRP7 "AT2G21660" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0005634 "nucleus"
            evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003690
            "double-stranded DNA binding" evidence=IDA] [GO:0003697
            "single-stranded DNA binding" evidence=IDA] [GO:0009409 "response
            to cold" evidence=IGI;IEP] [GO:0009414 "response to water
            deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
            evidence=IEP;RCA] [GO:0046686 "response to cadmium ion"
            evidence=IEP;RCA] [GO:0010501 "RNA secondary structure unwinding"
            evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
            [GO:0045087 "innate immune response" evidence=IMP;IDA] [GO:0005777
            "peroxisome" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
            evidence=IMP] [GO:0006970 "response to osmotic stress"
            evidence=IMP] [GO:0010119 "regulation of stomatal movement"
            evidence=IMP] [GO:0009507 "chloroplast" evidence=IDA] [GO:0010228
            "vegetative to reproductive phase transition of meristem"
            evidence=RCA;IMP] [GO:0010043 "response to zinc ion" evidence=IEP]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
            evidence=IDA] [GO:0048046 "apoplast" evidence=IDA] [GO:0006094
            "gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
            evidence=RCA] [GO:0006833 "water transport" evidence=RCA]
            [GO:0006972 "hyperosmotic response" evidence=RCA] [GO:0007030
            "Golgi organization" evidence=RCA] [GO:0007623 "circadian rhythm"
            evidence=IEP;RCA;TAS] [GO:0009266 "response to temperature
            stimulus" evidence=RCA] [GO:0000380 "alternative mRNA splicing, via
            spliceosome" evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005829 GO:GO:0009506 GO:GO:0005634
            GO:GO:0009507 GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR
            GO:GO:0005777 GO:GO:0010119 GO:GO:0000166 GO:GO:0010043
            GO:GO:0048046 GO:GO:0007623 GO:GO:0009651 GO:GO:0009409
            GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003690
            GO:GO:0003697 GO:GO:0006406 GO:GO:0010228 eggNOG:COG0724
            GO:GO:0000380 HOGENOM:HOG000276232 GO:GO:0010501 GO:GO:0032508
            EMBL:AC007119 UniGene:At.22672 UniGene:At.23628 EMBL:Z14987
            EMBL:L00648 EMBL:L04172 EMBL:AF428381 EMBL:AY054284 EMBL:AY042826
            EMBL:AY072523 EMBL:AK318968 EMBL:AY085214 IPI:IPI00523161
            IPI:IPI00542675 PIR:S30147 RefSeq:NP_179760.1 UniGene:At.24279
            UniGene:At.72988 ProteinModelPortal:Q03250 SMR:Q03250 IntAct:Q03250
            MINT:MINT-1163877 STRING:Q03250 PaxDb:Q03250 PRIDE:Q03250
            ProMEX:Q03250 EnsemblPlants:AT2G21660.1 GeneID:816705
            KEGG:ath:AT2G21660 TAIR:At2g21660 InParanoid:Q03250 OMA:SQHEDGH
            ProtClustDB:CLSN2913158 Genevestigator:Q03250 Uniprot:Q03250
        Length = 176

 Score = 127 (49.8 bits), Expect = 3.6e-07, P = 3.6e-07
 Identities = 33/78 (42%), Positives = 47/78 (60%)

Query:   180 RCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKD 239
             RC  V GL+  T ++ +   F++YG V   +++ D +TGRSRGF FV F+   D  A KD
Sbjct:     9 RCF-VGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFK---DEKAMKD 64

Query:   240 ACTGM---EIDGRQIRVD 254
             A  GM   ++DGR I V+
Sbjct:    65 AIEGMNGQDLDGRSITVN 82


>UNIPROTKB|Q6IRQ4 [details] [associations]
            symbol:rbmx "RNA-binding motif protein, X chromosome"
            species:8355 "Xenopus laevis" [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
            proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISS] [GO:0048025
            "negative regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISS] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007275
            GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
            GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
            GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
            GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
            GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314
            InterPro:IPR012604 Pfam:PF08081 CTD:27316 KO:K12885 EMBL:BC070649
            RefSeq:NP_001084981.1 UniGene:Xl.25221 HSSP:P08579
            ProteinModelPortal:Q6IRQ4 SMR:Q6IRQ4 GeneID:432041 KEGG:xla:432041
            Xenbase:XB-GENE-6078824 Uniprot:Q6IRQ4
        Length = 370

 Score = 143 (55.4 bits), Expect = 3.7e-07, P = 3.7e-07
 Identities = 34/92 (36%), Positives = 51/92 (55%)

Query:   174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDD 233
             E  +P + L + GL+  T E+ +  +F KYG V  V ++ D +T +SRGF FV FES  D
Sbjct:     3 EADRPGK-LFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPAD 61

Query:   234 AAAAKDACTGMEIDGRQIRVDFSVTQRAHTPT 265
             A  A     G  +DG+ I+V+ +      TP+
Sbjct:    62 AKDAARELNGKALDGKPIKVEQATKPSFSTPS 93


>UNIPROTKB|H3BR27 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome,
            N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 HGNC:HGNC:9910
            ChiTaRS:RBMX SMR:H3BR27 Ensembl:ENST00000464781
            Ensembl:ENST00000568578 Uniprot:H3BR27
        Length = 78

 Score = 122 (48.0 bits), Expect = 4.2e-07, P = 4.2e-07
 Identities = 30/75 (40%), Positives = 44/75 (58%)

Query:   174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDD 233
             E  +P + L + GL+  T E+ +  +F KYG +  V ++ D +T +SRGF FV FES  D
Sbjct:     3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61

Query:   234 AA-AAKDACTGMEID 247
             A  AA+D    M +D
Sbjct:    62 AKDAARDMNGKMTVD 76


>UNIPROTKB|E1C3R0 [details] [associations]
            symbol:PPIL4 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0003755 "peptidyl-prolyl
            cis-trans isomerase activity" evidence=IEA] [GO:0006457 "protein
            folding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002130
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153
            PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360 GO:GO:0006457
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0003755
            SUPFAM:SSF50891 GO:GO:0000413 GeneTree:ENSGT00670000097658
            KO:K12735 OMA:DRTQNRS CTD:85313 EMBL:AADN02025352 IPI:IPI00603037
            RefSeq:XP_419663.2 UniGene:Gga.34615 ProteinModelPortal:E1C3R0
            Ensembl:ENSGALT00000020195 GeneID:421625 KEGG:gga:421625
            NextBio:20824363 Uniprot:E1C3R0
        Length = 478

 Score = 144 (55.7 bits), Expect = 4.5e-07, P = 4.5e-07
 Identities = 33/86 (38%), Positives = 47/86 (54%)

Query:   171 DGRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFES 230
             D    P P   L V  L+  TT++ +  IFS++GP++  EV+ D KTG S  + F+ FE 
Sbjct:   232 DAEVKP-PENVLFVCKLNPVTTDEDLEIIFSRFGPIKSCEVIRDWKTGESLCYAFIEFEK 290

Query:   231 RDDAAAAKDACTGMEIDGRQIRVDFS 256
              +D   A      + ID R+I VDFS
Sbjct:   291 EEDCEKAYFKMDNVLIDDRRIHVDFS 316


>UNIPROTKB|G3XAC6 [details] [associations]
            symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
            isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
            UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
            ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
            ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
        Length = 423

 Score = 137 (53.3 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
 Identities = 33/110 (30%), Positives = 59/110 (53%)

Query:   178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAA 237
             P R L V  L    TE  +  IF  +G +E +++++D++TGRS+G+ F+ F   + A  A
Sbjct:   249 PMR-LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA 307

Query:   238 KDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTYEQLNNTQSELGS 287
              +   G E+ GR ++V   VT+R    +   ++     ++L  T  +LG+
Sbjct:   308 LEQLNGFELAGRPMKVGH-VTERTDASSASSFLDS---DELERTGIDLGT 353

 Score = 46 (21.3 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
 Identities = 16/47 (34%), Positives = 24/47 (51%)

Query:    50 YRLSPARSGSAGSIDD--KKYRKSITRSRSGSPHRRSKRPQVACGRD 94
             Y+    +  SA   ++  KK +KS +RSRS    +RSK  +    RD
Sbjct:    15 YKKDENKLSSANGHEERSKKRKKSKSRSRSHE-RKRSKSKERKRSRD 60

 Score = 44 (20.5 bits), Expect = 7.7e-07, Sum P(2) = 7.7e-07
 Identities = 9/14 (64%), Positives = 10/14 (71%)

Query:    74 RSRSGSPHRRSKRP 87
             RSRS SP R+ K P
Sbjct:   124 RSRSKSPFRKDKSP 137


>DICTYBASE|DDB_G0277353 [details] [associations]
            symbol:DDB_G0277353 "RNA-binding region RNP-1
            domain-containing protein" species:44689 "Dictyostelium discoideum"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 dictyBase:DDB_G0277353 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000019 eggNOG:NOG321849
            RefSeq:XP_642758.1 ProteinModelPortal:Q54ZV8
            EnsemblProtists:DDB0232331 GeneID:8620947 KEGG:ddi:DDB_G0277353
            InParanoid:Q54ZV8 OMA:FNGTHLD Uniprot:Q54ZV8
        Length = 633

 Score = 146 (56.5 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
 Identities = 26/81 (32%), Positives = 50/81 (61%)

Query:   177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAA 236
             + S+C+ V  L  +  +Q +  +F K+GP+  + V  D + G+S+G+ FV FE++ DA A
Sbjct:   296 EKSKCIFVGNLPYHFQKQHLEDLFGKFGPLVNINVGFDKRNGQSKGYAFVEFENKPDADA 355

Query:   237 AKDACTGMEIDGRQIRVDFSV 257
             A +     E++ R++R+D+ +
Sbjct:   356 AFNEYLVKEVENRKLRLDWDI 376

 Score = 41 (19.5 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
 Identities = 14/52 (26%), Positives = 18/52 (34%)

Query:    37 PKEPAQTSSDQCYYRLSPARSGSAGSIDDKKYRKSITRSRSGSPHRRSKRPQ 88
             P   +  SS +  Y   P   G  G  D   Y        SG    R +RP+
Sbjct:   235 PPRDSYRSSYRGGYDSRPHHGGRGGYRDSGSYHHPYGGGGSGGSGGRFQRPR 286


>UNIPROTKB|Q96E39 [details] [associations]
            symbol:RBMXL1 "RNA binding motif protein, X-linked-like-1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471097 GO:GO:0030529
            eggNOG:COG0724 EMBL:AL139416 HSSP:Q14103 UniGene:Hs.481898
            HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 KO:K12885 EMBL:AL832554 EMBL:BC012942 IPI:IPI00061178
            RefSeq:NP_001156008.1 RefSeq:NP_062556.2 ProteinModelPortal:Q96E39
            SMR:Q96E39 IntAct:Q96E39 STRING:Q96E39 PhosphoSite:Q96E39
            PaxDb:Q96E39 PRIDE:Q96E39 Ensembl:ENST00000321792
            Ensembl:ENST00000399794 GeneID:494115 KEGG:hsa:494115
            UCSC:uc001dms.3 CTD:494115 GeneCards:GC01M089446 HGNC:HGNC:25073
            neXtProt:NX_Q96E39 PharmGKB:PA165752300 OMA:STIYVEN
            PhylomeDB:Q96E39 GenomeRNAi:494115 NextBio:255993
            ArrayExpress:Q96E39 Bgee:Q96E39 Uniprot:Q96E39
        Length = 390

 Score = 142 (55.0 bits), Expect = 5.3e-07, P = 5.3e-07
 Identities = 37/98 (37%), Positives = 56/98 (57%)

Query:   174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDD 233
             E  +P + L + GL+  T E+ +  +F KYG +  V ++ D +T +SRGF FV FES  D
Sbjct:     3 EADRPGK-LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPAD 61

Query:   234 AA-AAKDACTGMEIDGRQIRVDFSVT---QRA-HTPTP 266
             A  AA+D   G  +DG+ I+V+ +     +R  H P P
Sbjct:    62 AKDAARDM-NGKSLDGKAIKVEQATKPSFERGRHGPPP 98


>TAIR|locus:2159401 [details] [associations]
            symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
            "mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
            evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
            "copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
            to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
            ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
            "regulation of flower development" evidence=RCA] [GO:0010228
            "vegetative to reproductive phase transition of meristem"
            evidence=RCA] [GO:0034968 "histone lysine methylation"
            evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
            EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
            GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
            HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
            IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
            ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
            PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
            KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
            HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
            ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
        Length = 309

 Score = 140 (54.3 bits), Expect = 5.3e-07, P = 5.3e-07
 Identities = 28/75 (37%), Positives = 46/75 (61%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L + G++    E  +   F+KYG V    V++D +TGRSRGF FV F S + A++A  A 
Sbjct:    42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQAL 101

Query:   242 TGMEIDGRQIRVDFS 256
              G ++ GR ++V+++
Sbjct:   102 DGRDLHGRVVKVNYA 116


>UNIPROTKB|O75526 [details] [associations]
            symbol:RBMXL2 "RNA-binding motif protein, X-linked-like-2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0030529 CTD:27288 HOGENOM:HOG000276235
            HOVERGEN:HBG063314 OMA:GDFDLRP OrthoDB:EOG4WSWBK InterPro:IPR012604
            Pfam:PF08081 eggNOG:NOG140744 HSSP:Q14011 EMBL:AF069682
            EMBL:AC100875 EMBL:BC057796 EMBL:AF279289 IPI:IPI00004450
            RefSeq:NP_055284.3 UniGene:Hs.121605 ProteinModelPortal:O75526
            SMR:O75526 IntAct:O75526 STRING:O75526 PhosphoSite:O75526
            PaxDb:O75526 PRIDE:O75526 Ensembl:ENST00000306904 GeneID:27288
            KEGG:hsa:27288 UCSC:uc001mfc.2 GeneCards:GC11P007068
            H-InvDB:HIX0035856 H-InvDB:HIX0171337 HGNC:HGNC:17886 HPA:HPA038912
            HPA:HPA051842 MIM:605444 neXtProt:NX_O75526 PharmGKB:PA162400840
            InParanoid:O75526 PhylomeDB:O75526 GenomeRNAi:27288 NextBio:50232
            Bgee:O75526 CleanEx:HS_RBMXL2 Genevestigator:O75526 Uniprot:O75526
        Length = 392

 Score = 142 (55.0 bits), Expect = 5.3e-07, P = 5.3e-07
 Identities = 39/108 (36%), Positives = 57/108 (52%)

Query:   174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDD 233
             E  +P + L + GL++ T E+ +   F KYG +  V ++ D +T +SRGF FV FES  D
Sbjct:     3 EADRPGK-LFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61

Query:   234 AAAAKDACTGMEIDGRQIRVD------FSVTQRAHTPTPGIYMGRPTY 275
             A AA     G  +DG+ I+V       F  ++R   P P    GRP +
Sbjct:    62 AKAAARDMNGKSLDGKAIKVAQATKPAFESSRRG--PPPPRSRGRPRF 107


>UNIPROTKB|H0Y6E7 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome,
            N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
            Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX Ensembl:ENST00000419968
            Uniprot:H0Y6E7
        Length = 292

 Score = 139 (54.0 bits), Expect = 5.9e-07, P = 5.9e-07
 Identities = 33/82 (40%), Positives = 50/82 (60%)

Query:   174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDD 233
             E  +P + L + GL+  T E+ +  +F KYG +  V ++ D +T +SRGF FV FES  D
Sbjct:     5 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 63

Query:   234 AA-AAKDACTGMEIDGRQIRVD 254
             A  AA+D   G  +DG+ I+V+
Sbjct:    64 AKDAARDM-NGKSLDGKAIKVE 84


>DICTYBASE|DDB_G0287197 [details] [associations]
            symbol:ncbp2 "nuclear cap-binding protein subunit 2"
            species:44689 "Dictyostelium discoideum" [GO:0045292 "mRNA cis
            splicing, via spliceosome" evidence=IEA] [GO:0005846 "nuclear cap
            binding complex" evidence=IEA;ISS] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000339 "RNA cap binding"
            evidence=IEA;ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0031047 "gene silencing by RNA" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0006370 "7-methylguanosine mRNA capping" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            dictyBase:DDB_G0287197 GO:GO:0005634 GenomeReviews:CM000153_GR
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000398
            eggNOG:COG0724 GO:GO:0006370 EMBL:AAFI02000098 GO:GO:0000339
            PANTHER:PTHR18847 GO:GO:0005846 HSSP:P52298 KO:K12883
            RefSeq:XP_637361.1 ProteinModelPortal:Q54KR9 SMR:Q54KR9
            STRING:Q54KR9 EnsemblProtists:DDB0233456 GeneID:8625983
            KEGG:ddi:DDB_G0287197 InParanoid:Q54KR9 OMA:KEDAADC
            ProtClustDB:CLSZ2497150 Uniprot:Q54KR9
        Length = 234

 Score = 136 (52.9 bits), Expect = 6.0e-07, P = 6.0e-07
 Identities = 28/69 (40%), Positives = 42/69 (60%)

Query:   187 LSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEI 246
             LS YTTE+Q+  +FSK G ++R+ + +D       GFCFV + S++DAA       G ++
Sbjct:    39 LSFYTTEEQLYELFSKCGEIKRIIMGLDRNQKTPCGFCFVEYYSKEDAADCIKYINGSKL 98

Query:   247 DGRQIRVDF 255
             D R IR D+
Sbjct:    99 DERLIRCDW 107


>UNIPROTKB|H3BT71 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome,
            N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
            Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX ProteinModelPortal:H3BT71
            SMR:H3BT71 Ensembl:ENST00000562646 Bgee:H3BT71 Uniprot:H3BT71
        Length = 296

 Score = 139 (54.0 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 33/82 (40%), Positives = 50/82 (60%)

Query:   174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDD 233
             E  +P + L + GL+  T E+ +  +F KYG +  V ++ D +T +SRGF FV FES  D
Sbjct:     3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61

Query:   234 AA-AAKDACTGMEIDGRQIRVD 254
             A  AA+D   G  +DG+ I+V+
Sbjct:    62 AKDAARDM-NGKSLDGKAIKVE 82


>TAIR|locus:2101714 [details] [associations]
            symbol:U1-70K "AT3G50670" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISM;IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IDA;RCA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=RCA] [GO:0030422 "production of siRNA
            involved in RNA interference" evidence=RCA] [GO:0035196 "production
            of miRNAs involved in gene silencing by miRNA" evidence=RCA]
            [GO:0043687 "post-translational protein modification" evidence=RCA]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0030529 EMBL:AL132979 GO:GO:0000398
            eggNOG:COG0724 EMBL:M93439 EMBL:U52909 EMBL:U52910 EMBL:AY039874
            EMBL:AY094003 IPI:IPI00517859 IPI:IPI00520131 PIR:S71367
            RefSeq:NP_190636.1 RefSeq:NP_850676.1 UniGene:At.25571
            ProteinModelPortal:Q42404 SMR:Q42404 IntAct:Q42404 STRING:Q42404
            PaxDb:Q42404 PRIDE:Q42404 EnsemblPlants:AT3G50670.1 GeneID:824230
            KEGG:ath:AT3G50670 GeneFarm:4534 TAIR:At3g50670
            HOGENOM:HOG000236289 InParanoid:Q42404 KO:K11093 OMA:KKSRGYL
            PhylomeDB:Q42404 ProtClustDB:CLSN2918318 Genevestigator:Q42404
            GermOnline:AT3G50670 InterPro:IPR022023 Pfam:PF12220 Uniprot:Q42404
        Length = 427

 Score = 142 (55.0 bits), Expect = 6.3e-07, P = 6.3e-07
 Identities = 32/85 (37%), Positives = 48/85 (56%)

Query:   171 DGRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFV-YFE 229
             D      P + L V  L+  ++E +I   F  YGP++RV +V D  T + +G+ F+ Y  
Sbjct:   129 DPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMH 188

Query:   230 SRDDAAAAKDACTGMEIDGRQIRVD 254
             +RD  AA K A  G +IDGR++ VD
Sbjct:   189 TRDMKAAYKQA-DGQKIDGRRVLVD 212


>UNIPROTKB|K7GRX3 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 InterPro:IPR012604
            Pfam:PF08081 EMBL:FP102148 Ensembl:ENSSSCT00000035747
            Uniprot:K7GRX3
        Length = 306

 Score = 139 (54.0 bits), Expect = 6.7e-07, P = 6.7e-07
 Identities = 33/82 (40%), Positives = 50/82 (60%)

Query:   174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDD 233
             E  +P + L + GL+  T E+ +  +F KYG +  V ++ D +T +SRGF FV FES  D
Sbjct:     3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61

Query:   234 AA-AAKDACTGMEIDGRQIRVD 254
             A  AA+D   G  +DG+ I+V+
Sbjct:    62 AKDAARDM-NGKSLDGKAIKVE 82


>UNIPROTKB|F1RXK2 [details] [associations]
            symbol:NCBP2L "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0045292 "mRNA cis splicing, via spliceosome"
            evidence=IEA] [GO:0005846 "nuclear cap binding complex"
            evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            OMA:GFREGQQ PANTHER:PTHR18847 GeneTree:ENSGT00390000003197
            EMBL:FP245415 ProteinModelPortal:F1RXK2 Ensembl:ENSSSCT00000013736
            Uniprot:F1RXK2
        Length = 156

 Score = 120 (47.3 bits), Expect = 7.0e-07, P = 7.0e-07
 Identities = 31/79 (39%), Positives = 42/79 (53%)

Query:   179 SRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAK 238
             S  L V  LSIYTTE+QI  +FS+ G V+ V + +D     + GFCFV +  R DA  A 
Sbjct:    38 SSTLYVENLSIYTTEEQIFELFSRCGDVKNVFMGLDNIKKTACGFCFVEYHLRADAENAM 97

Query:   239 DACTGMEIDGRQIRVDFSV 257
                 G  +D R I   + +
Sbjct:    98 RFLNGTLLDDRIIHTKWDI 116


>TAIR|locus:2119505 [details] [associations]
            symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
            UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
            ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
            EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
            TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
            Genevestigator:Q6ID29 Uniprot:Q6ID29
        Length = 87

 Score = 120 (47.3 bits), Expect = 7.0e-07, P = 7.0e-07
 Identities = 29/70 (41%), Positives = 38/70 (54%)

Query:   184 VFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTG 243
             V  LS  TT+  +   FS YG V    V+ D  T RSRGF FV + S  +A AA     G
Sbjct:     7 VGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDG 66

Query:   244 MEIDGRQIRV 253
              E++GR++ V
Sbjct:    67 KELNGRRVSV 76


>UNIPROTKB|Q29RT0 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome"
            species:9913 "Bos taurus" [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0048026 "positive regulation of
            mRNA splicing, via spliceosome" evidence=ISS] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=ISS] [GO:0001047 "core promoter binding" evidence=ISS]
            [GO:0070062 "extracellular vesicular exosome" evidence=ISS]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0048025 "negative regulation
            of mRNA splicing, via spliceosome" evidence=ISS] [GO:0071013
            "catalytic step 2 spliceosome" evidence=ISS] [GO:0005719 "nuclear
            euchromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0003729 "mRNA binding" evidence=ISS] [GO:0071347 "cellular
            response to interleukin-1" evidence=ISS] [GO:0006509 "membrane
            protein ectodomain proteolysis" evidence=ISS] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
            GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
            GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
            GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
            eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
            EMBL:BC114040 IPI:IPI00721392 RefSeq:NP_001040075.1
            RefSeq:XP_001250252.1 UniGene:Bt.59490 ProteinModelPortal:Q29RT0
            SMR:Q29RT0 Ensembl:ENSBTAT00000066112 GeneID:617969 GeneID:782306
            KEGG:bta:617969 KEGG:bta:782306 CTD:27288
            GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
            HOVERGEN:HBG063314 InParanoid:Q29RT0 OMA:GDFDLRP OrthoDB:EOG4WSWBK
            NextBio:20900925 InterPro:IPR012604 Pfam:PF08081 Uniprot:Q29RT0
        Length = 396

 Score = 141 (54.7 bits), Expect = 7.0e-07, P = 7.0e-07
 Identities = 31/80 (38%), Positives = 47/80 (58%)

Query:   174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDD 233
             E  +P + L + GL++ T E+ +   F KYG +  V ++ D +T +SRGF F+ FES  D
Sbjct:     3 EADRPGK-LFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPAD 61

Query:   234 AAAAKDACTGMEIDGRQIRV 253
             A AA     G  +DG+ I+V
Sbjct:    62 AKAAVRDMNGKSLDGKAIKV 81


>UNIPROTKB|I3LK87 [details] [associations]
            symbol:RBMX2 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00600000084414 OMA:HRHKRAR Ensembl:ENSSSCT00000023251
            Uniprot:I3LK87
        Length = 312

 Score = 139 (54.0 bits), Expect = 7.1e-07, P = 7.1e-07
 Identities = 32/79 (40%), Positives = 44/79 (55%)

Query:   186 GLSIYTTEQQINHIFS---KYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACT 242
             GL    TE  I  +FS   +YG +  + +V D KTG+S+GFCF+ +E +     A D   
Sbjct:    42 GLPYELTEGDIICVFSQINRYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFN 101

Query:   243 GMEIDGRQIRVDFSVTQRA 261
             G++I GR IRVD     RA
Sbjct:   102 GIKIKGRTIRVDHVSNYRA 120


>UNIPROTKB|F1N6W2 [details] [associations]
            symbol:PPIL4 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0006457 "protein folding" evidence=IEA] [GO:0003755
            "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002130 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160
            PRINTS:PR00153 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
            GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
            GeneTree:ENSGT00670000097658 KO:K12735 OMA:DRTQNRS CTD:85313
            EMBL:DAAA02027047 EMBL:DAAA02027048 EMBL:DAAA02027049
            EMBL:DAAA02027050 IPI:IPI00716338 RefSeq:NP_001193016.1
            UniGene:Bt.9312 ProteinModelPortal:F1N6W2
            Ensembl:ENSBTAT00000022582 GeneID:535676 KEGG:bta:535676
            NextBio:20876809 ArrayExpress:F1N6W2 Uniprot:F1N6W2
        Length = 492

 Score = 142 (55.0 bits), Expect = 8.0e-07, P = 8.0e-07
 Identities = 43/133 (32%), Positives = 65/133 (48%)

Query:   178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAA 237
             P   L V  L+  TT++ +  IFS++GP+   EV+ D KTG S  + F+ FE  +D   A
Sbjct:   238 PENVLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKA 297

Query:   238 KDACTGMEIDGRQIRVDFS--VTQRAHTPTPGIYMGRPTYEQLNNTQSELGSL-LSEKHA 294
                   + ID R+I VDFS  V +       G Y  +  +++    Q +  +L L +K  
Sbjct:   298 FFKMDNVLIDDRRIHVDFSQSVAKVKWKGKGGKYT-KSDFKEYEKEQDKPSNLVLKDKVK 356

Query:   295 IK-GGKFEEVFGE 306
              K   K+E V  E
Sbjct:   357 PKQDAKYELVLDE 369


>UNIPROTKB|F2Z2U1 [details] [associations]
            symbol:RBMY1A1 "RNA-binding motif protein, Y chromosome,
            family 1 member E" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC010141 HGNC:HGNC:9912
            HGNC:HGNC:23914 EMBL:AC007322 HGNC:HGNC:23915 HGNC:HGNC:23916
            IPI:IPI00916472 SMR:F2Z2U1 Ensembl:ENST00000358944
            Ensembl:ENST00000361046 Ensembl:ENST00000382639
            Ensembl:ENST00000382653 Uniprot:F2Z2U1
        Length = 81

 Score = 119 (46.9 bits), Expect = 9.0e-07, P = 9.0e-07
 Identities = 29/75 (38%), Positives = 44/75 (58%)

Query:   174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDD 233
             E   P + L + GL+  T E+ +  +F K+GP+  V ++ D +T +SRGF F+ FE+  D
Sbjct:     3 EADHPGK-LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-RTSKSRGFAFITFENPAD 60

Query:   234 AA-AAKDACTGMEID 247
             A  AAKD    M +D
Sbjct:    61 AKNAAKDMNGKMMVD 75


>WB|WBGene00009141 [details] [associations]
            symbol:ncbp-2 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            [GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
            development" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
            development" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
            [GO:0016246 "RNA interference" evidence=IMP] [GO:0006898
            "receptor-mediated endocytosis" evidence=IMP] [GO:0002009
            "morphogenesis of an epithelium" evidence=IMP] [GO:0008340
            "determination of adult lifespan" evidence=IMP] [GO:0042127
            "regulation of cell proliferation" evidence=IMP] [GO:0040020
            "regulation of meiosis" evidence=IMP] [GO:0040022 "feminization of
            hermaphroditic germ-line" evidence=IMP] [GO:0008406 "gonad
            development" evidence=IMP] [GO:0016477 "cell migration"
            evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
            [GO:0040010 "positive regulation of growth rate" evidence=IMP]
            [GO:0005635 "nuclear envelope" evidence=IDA] InterPro:IPR000504
            InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0008340 GO:GO:0009792 GO:GO:0002009
            GO:GO:0006898 GO:GO:0040007 GO:GO:0040010 GO:GO:0005635
            GO:GO:0016477 GO:GO:0008406 GO:GO:0002119 GO:GO:0016246
            GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 GO:GO:0040020
            GO:GO:0040022 eggNOG:COG0724 GO:GO:0006370 HOGENOM:HOG000217589
            PANTHER:PTHR18847 HSSP:P52298 GeneTree:ENSGT00390000003197
            EMBL:Z78419 PIR:T21382 RefSeq:NP_001250552.1 RefSeq:NP_001250553.1
            RefSeq:NP_001250554.1 ProteinModelPortal:Q93594 STRING:Q93594
            PaxDb:Q93594 GeneID:184953 KEGG:cel:CELE_F26A3.2 UCSC:F26A3.2
            CTD:184953 WormBase:F26A3.2a WormBase:F26A3.2b WormBase:F26A3.2c
            InParanoid:Q93594 OMA:YRTDYDV NextBio:926534 Uniprot:Q93594
        Length = 158

 Score = 119 (46.9 bits), Expect = 9.0e-07, P = 9.0e-07
 Identities = 30/84 (35%), Positives = 43/84 (51%)

Query:   173 RENPQPSRC-LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESR 231
             +E    + C L V  LS YT E Q+  +F + G V RV + +D       GFCFV + +R
Sbjct:    29 QETALRTSCTLYVGNLSYYTKEDQVYELFGRAGDVRRVIMGLDRFKKTPCGFCFVEYYTR 88

Query:   232 DDAAAAKDACTGMEIDGRQIRVDF 255
             +DA  A    +   +D R IR D+
Sbjct:    89 EDAELALQNISNTRMDDRVIRADW 112


>RGD|1310071 [details] [associations]
            symbol:Rbm39 "RNA binding motif protein 39" species:10116
            "Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005813
            "centrosome" evidence=ISO] [GO:0015630 "microtubule cytoskeleton"
            evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
            GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474050 eggNOG:COG0724
            HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584 HOGENOM:HOG000236253
            KO:K13091 OrthoDB:EOG4RJG1P IPI:IPI00555302 GeneID:100910882
            KEGG:rno:100910882 EMBL:BC091394 RefSeq:NP_001013225.1
            RefSeq:XP_003749654.1 UniGene:Rn.8555 SMR:Q5BJP4 STRING:Q5BJP4
            GeneID:362251 KEGG:rno:362251 UCSC:RGD:1310071 InParanoid:Q5BJP4
            NextBio:679201 Genevestigator:Q5BJP4 Uniprot:Q5BJP4
        Length = 524

 Score = 137 (53.3 bits), Expect = 9.5e-07, Sum P(2) = 9.5e-07
 Identities = 33/110 (30%), Positives = 59/110 (53%)

Query:   178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAA 237
             P R L V  L    TE  +  IF  +G +E +++++D++TGRS+G+ F+ F   + A  A
Sbjct:   249 PMR-LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA 307

Query:   238 KDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTYEQLNNTQSELGS 287
              +   G E+ GR ++V   VT+R    +   ++     ++L  T  +LG+
Sbjct:   308 LEQLNGFELAGRPMKVGH-VTERTDASSASSFLDS---DELERTGIDLGT 353

 Score = 46 (21.3 bits), Expect = 9.5e-07, Sum P(2) = 9.5e-07
 Identities = 16/47 (34%), Positives = 24/47 (51%)

Query:    50 YRLSPARSGSAGSIDD--KKYRKSITRSRSGSPHRRSKRPQVACGRD 94
             Y+    +  SA   ++  KK +KS +RSRS    +RSK  +    RD
Sbjct:    15 YKKDENKLNSANGHEERSKKRKKSKSRSRSHE-RKRSKSKERKRSRD 60

 Score = 44 (20.5 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
 Identities = 9/14 (64%), Positives = 10/14 (71%)

Query:    74 RSRSGSPHRRSKRP 87
             RSRS SP R+ K P
Sbjct:   124 RSRSKSPFRKDKSP 137


>UNIPROTKB|F6QIA5 [details] [associations]
            symbol:RBM39 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
            GeneTree:ENSGT00690000102089 EMBL:DAAA02036526 IPI:IPI01017797
            Ensembl:ENSBTAT00000002491 Uniprot:F6QIA5
        Length = 525

 Score = 137 (53.3 bits), Expect = 9.6e-07, Sum P(2) = 9.6e-07
 Identities = 33/110 (30%), Positives = 59/110 (53%)

Query:   178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAA 237
             P R L V  L    TE  +  IF  +G +E +++++D++TGRS+G+ F+ F   + A  A
Sbjct:   249 PMR-LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA 307

Query:   238 KDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTYEQLNNTQSELGS 287
              +   G E+ GR ++V   VT+R    +   ++     ++L  T  +LG+
Sbjct:   308 LEQLNGFELAGRPMKVGH-VTERTDASSASSFLDS---DELERTGIDLGT 353

 Score = 46 (21.3 bits), Expect = 9.6e-07, Sum P(2) = 9.6e-07
 Identities = 16/47 (34%), Positives = 24/47 (51%)

Query:    50 YRLSPARSGSAGSIDD--KKYRKSITRSRSGSPHRRSKRPQVACGRD 94
             Y+    +  SA   ++  KK +KS +RSRS    +RSK  +    RD
Sbjct:    15 YKKDENKLSSANGHEERSKKRKKSKSRSRSHE-RKRSKSKERKRSRD 60

 Score = 44 (20.5 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
 Identities = 9/14 (64%), Positives = 10/14 (71%)

Query:    74 RSRSGSPHRRSKRP 87
             RSRS SP R+ K P
Sbjct:   124 RSRSKSPFRKDKSP 137


>UNIPROTKB|F2Z5I2 [details] [associations]
            symbol:RBM39 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
            GeneTree:ENSGT00690000102089 EMBL:CU210870
            Ensembl:ENSSSCT00000007997 ArrayExpress:F2Z5I2 Uniprot:F2Z5I2
        Length = 525

 Score = 137 (53.3 bits), Expect = 9.6e-07, Sum P(2) = 9.6e-07
 Identities = 33/110 (30%), Positives = 59/110 (53%)

Query:   178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAA 237
             P R L V  L    TE  +  IF  +G +E +++++D++TGRS+G+ F+ F   + A  A
Sbjct:   249 PMR-LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA 307

Query:   238 KDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTYEQLNNTQSELGS 287
              +   G E+ GR ++V   VT+R    +   ++     ++L  T  +LG+
Sbjct:   308 LEQLNGFELAGRPMKVGH-VTERTDASSASSFLDS---DELERTGIDLGT 353

 Score = 46 (21.3 bits), Expect = 9.6e-07, Sum P(2) = 9.6e-07
 Identities = 16/47 (34%), Positives = 24/47 (51%)

Query:    50 YRLSPARSGSAGSIDD--KKYRKSITRSRSGSPHRRSKRPQVACGRD 94
             Y+    +  SA   ++  KK +KS +RSRS    +RSK  +    RD
Sbjct:    15 YKKDENKLSSANGHEERSKKRKKSKSRSRSHE-RKRSKSKERKRSRD 60

 Score = 44 (20.5 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
 Identities = 9/14 (64%), Positives = 10/14 (71%)

Query:    74 RSRSGSPHRRSKRP 87
             RSRS SP R+ K P
Sbjct:   124 RSRSKSPFRKDKSP 137


>UNIPROTKB|E2R4L0 [details] [associations]
            symbol:RBM39 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005813 "centrosome" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
            CTD:9584 KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089
            EMBL:AAEX03013911 RefSeq:XP_864959.2 ProteinModelPortal:E2R4L0
            SMR:E2R4L0 PRIDE:E2R4L0 Ensembl:ENSCAFT00000013241 GeneID:477216
            KEGG:cfa:477216 NextBio:20852735 Uniprot:E2R4L0
        Length = 530

 Score = 137 (53.3 bits), Expect = 9.9e-07, Sum P(2) = 9.9e-07
 Identities = 33/110 (30%), Positives = 59/110 (53%)

Query:   178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAA 237
             P R L V  L    TE  +  IF  +G +E +++++D++TGRS+G+ F+ F   + A  A
Sbjct:   249 PMR-LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA 307

Query:   238 KDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTYEQLNNTQSELGS 287
              +   G E+ GR ++V   VT+R    +   ++     ++L  T  +LG+
Sbjct:   308 LEQLNGFELAGRPMKVGH-VTERTDASSASSFLDS---DELERTGIDLGT 353

 Score = 46 (21.3 bits), Expect = 9.9e-07, Sum P(2) = 9.9e-07
 Identities = 16/47 (34%), Positives = 24/47 (51%)

Query:    50 YRLSPARSGSAGSIDD--KKYRKSITRSRSGSPHRRSKRPQVACGRD 94
             Y+    +  SA   ++  KK +KS +RSRS    +RSK  +    RD
Sbjct:    15 YKKDENKLSSANGHEERSKKRKKSKSRSRSHE-RKRSKSKERKRSRD 60

 Score = 44 (20.5 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
 Identities = 9/14 (64%), Positives = 10/14 (71%)

Query:    74 RSRSGSPHRRSKRP 87
             RSRS SP R+ K P
Sbjct:   124 RSRSKSPFRKDKSP 137


>UNIPROTKB|Q14498 [details] [associations]
            symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
            [GO:0006396 "RNA processing" evidence=TAS] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005813
            "centrosome" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR006509
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005813 EMBL:CH471077 GO:GO:0005654 GO:GO:0006355
            GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
            eggNOG:COG0724 EMBL:AL357374 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
            EMBL:L10910 EMBL:L10911 EMBL:AK299678 EMBL:BC131543 EMBL:BC141835
            EMBL:BC158172 IPI:IPI00163505 IPI:IPI00215801 IPI:IPI00514831
            PIR:I55595 RefSeq:NP_001229528.1 RefSeq:NP_001229529.1
            RefSeq:NP_004893.1 RefSeq:NP_909122.1 UniGene:Hs.282901 PDB:2JRS
            PDBsum:2JRS ProteinModelPortal:Q14498 SMR:Q14498 IntAct:Q14498
            MINT:MINT-5004569 STRING:Q14498 PhosphoSite:Q14498 DMDM:28201880
            PaxDb:Q14498 PRIDE:Q14498 Ensembl:ENST00000253363
            Ensembl:ENST00000361162 Ensembl:ENST00000528062 GeneID:9584
            KEGG:hsa:9584 UCSC:uc002xeb.3 UCSC:uc002xec.3 CTD:9584
            GeneCards:GC20M034291 HGNC:HGNC:15923 HPA:HPA001591 MIM:604739
            neXtProt:NX_Q14498 PharmGKB:PA34450 HOGENOM:HOG000236253
            InParanoid:Q14498 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
            PhylomeDB:Q14498 ChiTaRS:RBM39 EvolutionaryTrace:Q14498
            GenomeRNAi:9584 NextBio:35953 ArrayExpress:Q14498 Bgee:Q14498
            CleanEx:HS_RBM39 Genevestigator:Q14498 GermOnline:ENSG00000131051
            Uniprot:Q14498
        Length = 530

 Score = 137 (53.3 bits), Expect = 9.9e-07, Sum P(2) = 9.9e-07
 Identities = 33/110 (30%), Positives = 59/110 (53%)

Query:   178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAA 237
             P R L V  L    TE  +  IF  +G +E +++++D++TGRS+G+ F+ F   + A  A
Sbjct:   249 PMR-LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA 307

Query:   238 KDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTYEQLNNTQSELGS 287
              +   G E+ GR ++V   VT+R    +   ++     ++L  T  +LG+
Sbjct:   308 LEQLNGFELAGRPMKVGH-VTERTDASSASSFLDS---DELERTGIDLGT 353

 Score = 46 (21.3 bits), Expect = 9.9e-07, Sum P(2) = 9.9e-07
 Identities = 16/47 (34%), Positives = 24/47 (51%)

Query:    50 YRLSPARSGSAGSIDD--KKYRKSITRSRSGSPHRRSKRPQVACGRD 94
             Y+    +  SA   ++  KK +KS +RSRS    +RSK  +    RD
Sbjct:    15 YKKDENKLSSANGHEERSKKRKKSKSRSRSHE-RKRSKSKERKRSRD 60

 Score = 44 (20.5 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
 Identities = 9/14 (64%), Positives = 10/14 (71%)

Query:    74 RSRSGSPHRRSKRP 87
             RSRS SP R+ K P
Sbjct:   124 RSRSKSPFRKDKSP 137


>MGI|MGI:2157953 [details] [associations]
            symbol:Rbm39 "RNA binding motif protein 39" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003713
            "transcription coactivator activity" evidence=TAS] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=TAS] [GO:0006351 "transcription,
            DNA-dependent" evidence=TAS] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2157953
            GO:GO:0005634 GO:GO:0005813 GO:GO:0006355 GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
            EMBL:CH466551 GO:GO:0003723 GO:GO:0003713 eggNOG:COG0724
            EMBL:AL929404 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584
            HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
            ChiTaRS:RBM39 EMBL:AY061882 EMBL:AK147076 EMBL:BX649640
            EMBL:BC004000 EMBL:BC030493 EMBL:BC086645 IPI:IPI00127763
            IPI:IPI00223371 IPI:IPI00223372 RefSeq:NP_573505.2
            UniGene:Mm.392436 UniGene:Mm.436932 PDB:2LQ5 PDB:3S6E PDBsum:2LQ5
            PDBsum:3S6E ProteinModelPortal:Q8VH51 SMR:Q8VH51 IntAct:Q8VH51
            STRING:Q8VH51 PhosphoSite:Q8VH51 PaxDb:Q8VH51 PRIDE:Q8VH51
            Ensembl:ENSMUST00000029149 Ensembl:ENSMUST00000109587
            Ensembl:ENSMUST00000146297 GeneID:170791 KEGG:mmu:170791
            GeneTree:ENSGT00690000102089 InParanoid:Q5RJI0
            EvolutionaryTrace:Q8VH51 NextBio:370435 Bgee:Q8VH51
            CleanEx:MM_RBM39 Genevestigator:Q8VH51
            GermOnline:ENSMUSG00000027620 Uniprot:Q8VH51
        Length = 530

 Score = 137 (53.3 bits), Expect = 9.9e-07, Sum P(2) = 9.9e-07
 Identities = 33/110 (30%), Positives = 59/110 (53%)

Query:   178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAA 237
             P R L V  L    TE  +  IF  +G +E +++++D++TGRS+G+ F+ F   + A  A
Sbjct:   249 PMR-LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA 307

Query:   238 KDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTYEQLNNTQSELGS 287
              +   G E+ GR ++V   VT+R    +   ++     ++L  T  +LG+
Sbjct:   308 LEQLNGFELAGRPMKVGH-VTERTDASSASSFLDS---DELERTGIDLGT 353

 Score = 46 (21.3 bits), Expect = 9.9e-07, Sum P(2) = 9.9e-07
 Identities = 16/47 (34%), Positives = 24/47 (51%)

Query:    50 YRLSPARSGSAGSIDD--KKYRKSITRSRSGSPHRRSKRPQVACGRD 94
             Y+    +  SA   ++  KK +KS +RSRS    +RSK  +    RD
Sbjct:    15 YKKDENKLNSANGHEERSKKRKKSKSRSRSHE-RKRSKSKERKRSRD 60

 Score = 44 (20.5 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
 Identities = 9/14 (64%), Positives = 10/14 (71%)

Query:    74 RSRSGSPHRRSKRP 87
             RSRS SP R+ K P
Sbjct:   124 RSRSKSPFRKDKSP 137


>UNIPROTKB|F1MA64 [details] [associations]
            symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] InterPro:IPR000504
            InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:1310071 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
            KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AC118414
            IPI:IPI00555302 RefSeq:XP_003749653.1 ProteinModelPortal:F1MA64
            SMR:F1MA64 PRIDE:F1MA64 Ensembl:ENSRNOT00000026964 GeneID:100910882
            KEGG:rno:100910882 ArrayExpress:F1MA64 Uniprot:F1MA64
        Length = 530

 Score = 137 (53.3 bits), Expect = 9.9e-07, Sum P(2) = 9.9e-07
 Identities = 33/110 (30%), Positives = 59/110 (53%)

Query:   178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAA 237
             P R L V  L    TE  +  IF  +G +E +++++D++TGRS+G+ F+ F   + A  A
Sbjct:   249 PMR-LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA 307

Query:   238 KDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTYEQLNNTQSELGS 287
              +   G E+ GR ++V   VT+R    +   ++     ++L  T  +LG+
Sbjct:   308 LEQLNGFELAGRPMKVGH-VTERTDASSASSFLDS---DELERTGIDLGT 353

 Score = 46 (21.3 bits), Expect = 9.9e-07, Sum P(2) = 9.9e-07
 Identities = 16/47 (34%), Positives = 24/47 (51%)

Query:    50 YRLSPARSGSAGSIDD--KKYRKSITRSRSGSPHRRSKRPQVACGRD 94
             Y+    +  SA   ++  KK +KS +RSRS    +RSK  +    RD
Sbjct:    15 YKKDENKLNSANGHEERSKKRKKSKSRSRSHE-RKRSKSKERKRSRD 60

 Score = 44 (20.5 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
 Identities = 9/14 (64%), Positives = 10/14 (71%)

Query:    74 RSRSGSPHRRSKRP 87
             RSRS SP R+ K P
Sbjct:   124 RSRSKSPFRKDKSP 137


>UNIPROTKB|B4DN89 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:CH471099 EMBL:AC005837 UniGene:Hs.584801 HGNC:HGNC:10783
            ChiTaRS:SRSF2 EMBL:AK297813 IPI:IPI01011463
            ProteinModelPortal:B4DN89 STRING:B4DN89 PRIDE:B4DN89
            Ensembl:ENST00000508921 UCSC:uc010wtg.2 ArrayExpress:B4DN89
            Bgee:B4DN89 Uniprot:B4DN89
        Length = 209

 Score = 132 (51.5 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 33/87 (37%), Positives = 44/87 (50%)

Query:   172 GRENP--QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFE 229
             GR  P  +    L V  L+  T+   +  +F KYG V  V +  D  T  SRGF FV F 
Sbjct:     4 GRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFH 63

Query:   230 SRDDAAAAKDACTGMEIDGRQIRVDFS 256
              + DA  A DA  G  +DGR++RV  +
Sbjct:    64 DKRDAEDAMDAMDGAVLDGRELRVQMA 90


>ZFIN|ZDB-GENE-030131-2420 [details] [associations]
            symbol:srsf2b "serine/arginine-rich splicing
            factor 2b" species:7955 "Danio rerio" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2420
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
            HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
            HOGENOM:HOG000276233 OrthoDB:EOG4D26RH EMBL:CU463857 EMBL:BC065971
            IPI:IPI00484778 UniGene:Dr.77943 SMR:Q6NZT9 STRING:Q6NZT9
            Ensembl:ENSDART00000017706 Ensembl:ENSDART00000105586
            InParanoid:Q6NZT9 OMA:YVEMESA Uniprot:Q6NZT9
        Length = 220

 Score = 133 (51.9 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 35/90 (38%), Positives = 46/90 (51%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L V  L+  T+ + +  +F KYG V  V +  D  T  SRGF FV F  + DA  A DA 
Sbjct:    16 LKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75

Query:   242 TGMEIDGRQIRVDFSVTQRAHTPTPGIYMG 271
              G  +DGR++RV  +   R   P P  Y G
Sbjct:    76 DGAILDGRELRVQMA---RYGRP-PDSYYG 101


>UNIPROTKB|G4N872 [details] [associations]
            symbol:MGG_06296 "Nuclear cap-binding protein subunit 2"
            species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677
            InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398 EMBL:CM001234
            GO:GO:0000243 GO:GO:0000339 PANTHER:PTHR18847 GO:GO:0005846
            KO:K12883 RefSeq:XP_003717292.1 ProteinModelPortal:G4N872
            SMR:G4N872 EnsemblFungi:MGG_06296T0 GeneID:2684451
            KEGG:mgr:MGG_06296 Uniprot:G4N872
        Length = 185

 Score = 128 (50.1 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 31/83 (37%), Positives = 45/83 (54%)

Query:   173 RENPQP-SRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESR 231
             +E+P   S  L V  LS YTTE+Q+  +FSK G ++R+ + +D       GFCFV + + 
Sbjct:    40 QEDPLANSTTLYVGNLSFYTTEEQVYELFSKCGEIKRLVMGLDRFNKTPCGFCFVEYYTH 99

Query:   232 DDAAAAKDACTGMEIDGRQIRVD 254
              DA        G ++D R IR D
Sbjct:   100 QDAIDCMKYIGGTKLDERVIRTD 122


>MGI|MGI:1914668 [details] [associations]
            symbol:Ppil4 "peptidylprolyl isomerase (cyclophilin)-like 4"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0003755 "peptidyl-prolyl cis-trans
            isomerase activity" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006457
            "protein folding" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0016853 "isomerase activity" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002130 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153 PROSITE:PS00170
            PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1914668
            GO:GO:0005634 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 eggNOG:COG0724 GO:GO:0003755 SUPFAM:SSF50891
            GO:GO:0000413 GeneTree:ENSGT00670000097658 HOGENOM:HOG000186284
            KO:K12735 OMA:DRTQNRS CTD:85313 HOVERGEN:HBG057731
            OrthoDB:EOG4QVCC7 EMBL:AK011443 EMBL:AK014406 EMBL:AK167258
            EMBL:BC079912 IPI:IPI00110280 RefSeq:NP_080417.2 UniGene:Mm.38927
            ProteinModelPortal:Q9CXG3 SMR:Q9CXG3 PhosphoSite:Q9CXG3
            PaxDb:Q9CXG3 PRIDE:Q9CXG3 Ensembl:ENSMUST00000015901 GeneID:67418
            KEGG:mmu:67418 UCSC:uc007eip.2 InParanoid:Q9CXG3 NextBio:324510
            Bgee:Q9CXG3 CleanEx:MM_PPIL4 Genevestigator:Q9CXG3
            GermOnline:ENSMUSG00000015757 Uniprot:Q9CXG3
        Length = 492

 Score = 141 (54.7 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 42/133 (31%), Positives = 65/133 (48%)

Query:   178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAA 237
             P   L V  L+  TT++ +  IFS++GP+   EV+ D KTG S  + F+ FE  +D   A
Sbjct:   238 PENVLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKA 297

Query:   238 KDACTGMEIDGRQIRVDFS--VTQRAHTPTPGIYMGRPTYEQLNNTQSELGSL-LSEKHA 294
                   + ID R+I VDFS  V +       G Y  +  +++    Q +  +L L EK  
Sbjct:   298 FFKMDNVLIDDRRIHVDFSQSVAKVKWKGKGGKYT-KSDFKEYEKEQDKPANLVLKEKVK 356

Query:   295 IK-GGKFEEVFGE 306
              K   K++ +  E
Sbjct:   357 PKQDAKYDLILDE 369


>RGD|1311051 [details] [associations]
            symbol:Ppil4 "peptidylprolyl isomerase (cyclophilin)-like 4"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
            evidence=IEA] [GO:0006457 "protein folding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002130 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153 PROSITE:PS50072
            PROSITE:PS50102 SMART:SM00360 RGD:1311051 GO:GO:0006457
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0003755
            SUPFAM:SSF50891 GO:GO:0000413 GeneTree:ENSGT00670000097658
            OMA:DRTQNRS OrthoDB:EOG4QVCC7 IPI:IPI00365361
            Ensembl:ENSRNOT00000021437 UCSC:RGD:1311051 Uniprot:D4AEG3
        Length = 492

 Score = 141 (54.7 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 42/133 (31%), Positives = 65/133 (48%)

Query:   178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAA 237
             P   L V  L+  TT++ +  IFS++GP+   EV+ D KTG S  + F+ FE  +D   A
Sbjct:   238 PENVLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKA 297

Query:   238 KDACTGMEIDGRQIRVDFS--VTQRAHTPTPGIYMGRPTYEQLNNTQSELGSL-LSEKHA 294
                   + ID R+I VDFS  V +       G Y  +  +++    Q +  +L L EK  
Sbjct:   298 FFKMDNVLIDDRRIHVDFSQSVAKVKWKGKGGKYT-KSDFKEYEKEQDKPANLVLKEKVK 356

Query:   295 IK-GGKFEEVFGE 306
              K   K++ +  E
Sbjct:   357 PKQDAKYDLILDE 369


>TAIR|locus:2173338 [details] [associations]
            symbol:SC35 "ortholog of human splicing factor SC35"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISM] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=RCA;TAS] [GO:0016607 "nuclear speck"
            evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0016020
            "membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
            [GO:0030422 "production of siRNA involved in RNA interference"
            evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
            silencing by miRNA" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005829 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0016020
            GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AB008268 HSSP:P19339 GO:GO:0000398 eggNOG:COG0724
            HOGENOM:HOG000276233 KO:K12891 OMA:DHRRRTR EMBL:AY063890
            EMBL:AY122917 EMBL:AY127004 EMBL:AY143851 IPI:IPI00549029
            RefSeq:NP_201225.1 RefSeq:NP_851261.1 UniGene:At.23698
            UniGene:At.49215 ProteinModelPortal:Q9FMG4 SMR:Q9FMG4 STRING:Q9FMG4
            PaxDb:Q9FMG4 PRIDE:Q9FMG4 EnsemblPlants:AT5G64200.1
            EnsemblPlants:AT5G64200.2 GeneID:836541 KEGG:ath:AT5G64200
            TAIR:At5g64200 InParanoid:Q9FMG4 ProtClustDB:CLSN2914827
            ArrayExpress:Q9FMG4 Genevestigator:Q9FMG4 Uniprot:Q9FMG4
        Length = 303

 Score = 137 (53.3 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 32/88 (36%), Positives = 48/88 (54%)

Query:   172 GRENP---QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYF 228
             GR  P     +  L V  ++  TT   +  +F+KYG V  V +  D +TG SRGF FV +
Sbjct:     5 GRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRY 64

Query:   229 ESRDDAAAAKDACTGMEIDGRQIRVDFS 256
             + +D+A  A +   G  +DGR+I V F+
Sbjct:    65 KYKDEAHKAVERLDGRVVDGREITVQFA 92


>UNIPROTKB|F1NZD3 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 GO:GO:0070062 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0006366 GO:GO:0006509 GO:GO:0005719 GO:GO:0071347
            GO:GO:0071013 GO:GO:0000381 GeneTree:ENSGT00700000104336
            InterPro:IPR012604 Pfam:PF08081 OMA:PFFKGMS EMBL:AADN02013316
            EMBL:AADN02013317 IPI:IPI00575141 Ensembl:ENSGALT00000010428
            Uniprot:F1NZD3
        Length = 385

 Score = 139 (54.0 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 33/82 (40%), Positives = 50/82 (60%)

Query:   174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDD 233
             E  +P + L + GL+  T E+ +  +F KYG +  V ++ D +T +SRGF FV FES  D
Sbjct:     3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61

Query:   234 AA-AAKDACTGMEIDGRQIRVD 254
             A  AA+D   G  +DG+ I+V+
Sbjct:    62 AKDAARDM-NGKSLDGKAIKVE 82


>UNIPROTKB|F1RQ90 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0071347 "cellular response to interleukin-1"
            evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] [GO:0070062 "extracellular vesicular exosome"
            evidence=IEA] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IEA] [GO:0044530
            "supraspliceosomal complex" evidence=IEA] [GO:0006509 "membrane
            protein ectodomain proteolysis" evidence=IEA] [GO:0006366
            "transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003729 "mRNA
            binding" evidence=IEA] [GO:0003682 "chromatin binding"
            evidence=IEA] [GO:0001047 "core promoter binding" evidence=IEA]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0070062
            GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006366 GO:GO:0006509
            GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0000381
            GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
            CTD:27316 KO:K12885 OMA:PFFKGMS EMBL:FP102148 RefSeq:NP_001231025.1
            UniGene:Ssc.97220 Ensembl:ENSSSCT00000013889
            Ensembl:ENSSSCT00000034598 GeneID:100158042 KEGG:ssc:100158042
            Uniprot:F1RQ90
        Length = 390

 Score = 139 (54.0 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 33/82 (40%), Positives = 50/82 (60%)

Query:   174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDD 233
             E  +P + L + GL+  T E+ +  +F KYG +  V ++ D +T +SRGF FV FES  D
Sbjct:     3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61

Query:   234 AA-AAKDACTGMEIDGRQIRVD 254
             A  AA+D   G  +DG+ I+V+
Sbjct:    62 AKDAARDM-NGKSLDGKAIKVE 82


>RGD|1565256 [details] [associations]
            symbol:Rbmx "RNA binding motif protein, X-linked" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
            evidence=ISO] [GO:0003682 "chromatin binding" evidence=ISO]
            [GO:0003723 "RNA binding" evidence=ISO] [GO:0003727
            "single-stranded RNA binding" evidence=IDA] [GO:0003729 "mRNA
            binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal
            complex" evidence=IDA] [GO:0005719 "nuclear euchromatin"
            evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISO] [GO:0006376 "mRNA splice site selection"
            evidence=IMP] [GO:0006509 "membrane protein ectodomain proteolysis"
            evidence=ISO] [GO:0044530 "supraspliceosomal complex" evidence=ISO]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=IMP] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISO] [GO:0070062
            "extracellular vesicular exosome" evidence=ISO] [GO:0071013
            "catalytic step 2 spliceosome" evidence=ISO] [GO:0071347 "cellular
            response to interleukin-1" evidence=ISO] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1565256 GO:GO:0045893 GO:GO:0000166 GO:GO:0003727
            Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681 eggNOG:COG0724
            GO:GO:0006376 EMBL:CH474106 GeneTree:ENSGT00700000104336
            HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 CTD:27316 KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK
            EMBL:BC097479 IPI:IPI00370207 RefSeq:NP_001020834.1
            UniGene:Rn.229269 ProteinModelPortal:Q4V898 SMR:Q4V898
            STRING:Q4V898 PhosphoSite:Q4V898 PRIDE:Q4V898
            Ensembl:ENSRNOT00000001154 GeneID:302855 KEGG:rno:302855
            InParanoid:Q4V898 NextBio:650249 Genevestigator:Q4V898
            Uniprot:Q4V898
        Length = 390

 Score = 139 (54.0 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 33/82 (40%), Positives = 50/82 (60%)

Query:   174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDD 233
             E  +P + L + GL+  T E+ +  +F KYG +  V ++ D +T +SRGF FV FES  D
Sbjct:     3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61

Query:   234 AA-AAKDACTGMEIDGRQIRVD 254
             A  AA+D   G  +DG+ I+V+
Sbjct:    62 AKDAARDM-NGKSLDGKAIKVE 82


>ZFIN|ZDB-GENE-040426-2706 [details] [associations]
            symbol:srsf2a "serine/arginine-rich splicing
            factor 2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2706
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
            HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
            HOGENOM:HOG000276233 KO:K12891 OrthoDB:EOG4D26RH OMA:SAPPRRY
            EMBL:CR352342 EMBL:BC046045 IPI:IPI00482409 RefSeq:NP_998547.1
            UniGene:Dr.76609 SMR:Q7ZV13 STRING:Q7ZV13
            Ensembl:ENSDART00000080173 GeneID:406691 KEGG:dre:406691 CTD:406691
            InParanoid:Q7ZV13 NextBio:20818218 Uniprot:Q7ZV13
        Length = 225

 Score = 133 (51.9 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 33/87 (37%), Positives = 45/87 (51%)

Query:   172 GRENP--QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFE 229
             GR  P  +    L V  L+  T+ + +  +F KYG V  V +  D  T  SRGF FV F 
Sbjct:     4 GRPPPDVEGMTSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFH 63

Query:   230 SRDDAAAAKDACTGMEIDGRQIRVDFS 256
              + DA  A DA  G  +DGR++RV  +
Sbjct:    64 DKRDAEDAMDAMDGALLDGRELRVQMA 90


>UNIPROTKB|D3JUI8 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome,
            N-terminally processed" species:9913 "Bos taurus" [GO:0071347
            "cellular response to interleukin-1" evidence=IEA] [GO:0071013
            "catalytic step 2 spliceosome" evidence=IEA] [GO:0070062
            "extracellular vesicular exosome" evidence=IEA] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0044530 "supraspliceosomal complex"
            evidence=IEA] [GO:0006509 "membrane protein ectodomain proteolysis"
            evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0005719 "nuclear euchromatin"
            evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0003682
            "chromatin binding" evidence=IEA] [GO:0001047 "core promoter
            binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
            splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104336
            HOGENOM:HOG000276235 InterPro:IPR012604 Pfam:PF08081 CTD:27316
            KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:DAAA02067753
            EMBL:GU304600 IPI:IPI00706784 RefSeq:NP_001165510.1 UniGene:Bt.7342
            Ensembl:ENSBTAT00000017696 GeneID:509591 KEGG:bta:509591
            NextBio:20869035 Uniprot:D3JUI8
        Length = 391

 Score = 139 (54.0 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 33/82 (40%), Positives = 50/82 (60%)

Query:   174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDD 233
             E  +P + L + GL+  T E+ +  +F KYG +  V ++ D +T +SRGF FV FES  D
Sbjct:     3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61

Query:   234 AA-AAKDACTGMEIDGRQIRVD 254
             A  AA+D   G  +DG+ I+V+
Sbjct:    62 AKDAARDM-NGKSLDGKAIKVE 82


>UNIPROTKB|P38159 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
            [GO:0044530 "supraspliceosomal complex" evidence=IDA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0001047 "core promoter binding"
            evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0006509 "membrane protein ectodomain proteolysis"
            evidence=IDA] [GO:0071347 "cellular response to interleukin-1"
            evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
            evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=IDA] [GO:0003729 "mRNA binding"
            evidence=IDA] [GO:0048025 "negative regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0006366 "transcription from
            RNA polymerase II promoter" evidence=IDA] [GO:0005719 "nuclear
            euchromatin" evidence=IDA] [GO:0048026 "positive regulation of mRNA
            splicing, via spliceosome" evidence=ISS] [GO:0005654 "nucleoplasm"
            evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
            "gene expression" evidence=TAS] Reactome:REACT_71
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005654 GO:GO:0000166 GO:GO:0070062
            GO:GO:0051260 Reactome:REACT_1675 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
            GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0000398
            GO:GO:0071013 EMBL:AL683813 EMBL:CH471150 GO:GO:0048025
            eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
            HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
            KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:Z23064 EMBL:AF266723
            EMBL:AF266720 EMBL:AF266721 EMBL:AF266722 EMBL:AY464692
            EMBL:AK096015 EMBL:AK304868 EMBL:BC006550 EMBL:BC007435
            IPI:IPI00304692 IPI:IPI00552938 RefSeq:NP_001158275.1
            RefSeq:NP_002130.2 UniGene:Hs.380118 UniGene:Hs.710162
            ProteinModelPortal:P38159 SMR:P38159 DIP:DIP-34447N IntAct:P38159
            MINT:MINT-5000999 STRING:P38159 PhosphoSite:P38159 DMDM:23503093
            SWISS-2DPAGE:P38159 PaxDb:P38159 PRIDE:P38159 DNASU:27316
            Ensembl:ENST00000320676 Ensembl:ENST00000431446 GeneID:27316
            KEGG:hsa:27316 UCSC:uc004fad.1 GeneCards:GC0XM135951 HGNC:HGNC:9910
            MIM:300199 neXtProt:NX_P38159 PharmGKB:PA34277 HOGENOM:HOG000070250
            InParanoid:P38159 PhylomeDB:P38159 ChiTaRS:RBMX GenomeRNAi:27316
            NextBio:50322 ArrayExpress:P38159 Bgee:P38159 CleanEx:HS_RBMX
            Genevestigator:P38159 GermOnline:ENSG00000147274 Uniprot:P38159
        Length = 391

 Score = 139 (54.0 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 33/82 (40%), Positives = 50/82 (60%)

Query:   174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDD 233
             E  +P + L + GL+  T E+ +  +F KYG +  V ++ D +T +SRGF FV FES  D
Sbjct:     3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61

Query:   234 AA-AAKDACTGMEIDGRQIRVD 254
             A  AA+D   G  +DG+ I+V+
Sbjct:    62 AKDAARDM-NGKSLDGKAIKVE 82


>UNIPROTKB|A5A6M3 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome"
            species:9598 "Pan troglodytes" [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
            proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISS] [GO:0048025
            "negative regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISS] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
            GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
            GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
            GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724
            GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOGENOM:HOG000276235
            HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
            KO:K12885 EMBL:AB222151 RefSeq:NP_001128678.1 UniGene:Ptr.2579
            ProteinModelPortal:A5A6M3 SMR:A5A6M3 PRIDE:A5A6M3 GeneID:738482
            KEGG:ptr:738482 NextBio:20905775 Uniprot:A5A6M3
        Length = 391

 Score = 139 (54.0 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 33/82 (40%), Positives = 50/82 (60%)

Query:   174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDD 233
             E  +P + L + GL+  T E+ +  +F KYG +  V ++ D +T +SRGF FV FES  D
Sbjct:     3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61

Query:   234 AA-AAKDACTGMEIDGRQIRVD 254
             A  AA+D   G  +DG+ I+V+
Sbjct:    62 AKDAARDM-NGKSLDGKAIKVE 82


>UNIPROTKB|Q4R7F0 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome"
            species:9541 "Macaca fascicularis" [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
            proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISS] [GO:0048025
            "negative regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISS] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
            GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
            GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
            GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 GO:GO:0048026
            GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 EMBL:AB168869 ProteinModelPortal:Q4R7F0 SMR:Q4R7F0
            Uniprot:Q4R7F0
        Length = 391

 Score = 139 (54.0 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 33/82 (40%), Positives = 50/82 (60%)

Query:   174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDD 233
             E  +P + L + GL+  T E+ +  +F KYG +  V ++ D +T +SRGF FV FES  D
Sbjct:     3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61

Query:   234 AA-AAKDACTGMEIDGRQIRVD 254
             A  AA+D   G  +DG+ I+V+
Sbjct:    62 AKDAARDM-NGKSLDGKAIKVE 82


>MGI|MGI:1343044 [details] [associations]
            symbol:Rbmx "RNA binding motif protein, X chromosome"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
            evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003682 "chromatin binding" evidence=ISO] [GO:0003723 "RNA
            binding" evidence=ISO] [GO:0003727 "single-stranded RNA binding"
            evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634
            "nucleus" evidence=ISO] [GO:0005681 "spliceosomal complex"
            evidence=ISO] [GO:0005719 "nuclear euchromatin" evidence=ISO]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=ISO] [GO:0006376 "mRNA splice site selection"
            evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0006509 "membrane protein ectodomain proteolysis" evidence=ISO]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0044530
            "supraspliceosomal complex" evidence=ISO] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=ISO]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=ISO] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISO] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISO] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343044
            GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724
            EMBL:CH466583 HSSP:Q61474 GeneTree:ENSGT00700000104336
            HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 CTD:27316 KO:K12885 ChiTaRS:RBMX EMBL:AJ237846
            EMBL:AJ237847 EMBL:AK087940 EMBL:AK135164 EMBL:AK165006
            EMBL:AL672106 EMBL:BC003710 IPI:IPI00124979 RefSeq:NP_001160095.1
            RefSeq:NP_035382.1 UniGene:Mm.28275 ProteinModelPortal:Q9WV02
            SMR:Q9WV02 IntAct:Q9WV02 STRING:Q9WV02 PhosphoSite:Q9WV02
            PRIDE:Q9WV02 Ensembl:ENSMUST00000114726 Ensembl:ENSMUST00000114730
            Ensembl:ENSMUST00000140384 GeneID:19655 KEGG:mmu:19655
            UCSC:uc009thi.2 InParanoid:Q9R0Y0 NextBio:296930 Bgee:Q9WV02
            Genevestigator:Q9WV02 Uniprot:Q9WV02
        Length = 391

 Score = 139 (54.0 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 33/82 (40%), Positives = 50/82 (60%)

Query:   174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDD 233
             E  +P + L + GL+  T E+ +  +F KYG +  V ++ D +T +SRGF FV FES  D
Sbjct:     3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61

Query:   234 AA-AAKDACTGMEIDGRQIRVD 254
             A  AA+D   G  +DG+ I+V+
Sbjct:    62 AKDAARDM-NGKSLDGKAIKVE 82


>UNIPROTKB|E2R068 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
            OMA:PFFKGMS EMBL:AAEX03026954 Ensembl:ENSCAFT00000030124
            Uniprot:E2R068
        Length = 392

 Score = 139 (54.0 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 33/82 (40%), Positives = 50/82 (60%)

Query:   174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDD 233
             E  +P + L + GL+  T E+ +  +F KYG +  V ++ D +T +SRGF FV FES  D
Sbjct:     4 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 62

Query:   234 AA-AAKDACTGMEIDGRQIRVD 254
             A  AA+D   G  +DG+ I+V+
Sbjct:    63 AKDAARDM-NGKSLDGKAIKVE 83


>TAIR|locus:2013016 [details] [associations]
            symbol:CSTF64 "cleavage stimulating factor 64"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISM] [GO:0003729 "mRNA binding" evidence=IDA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0031123 "RNA 3'-end
            processing" evidence=IMP] [GO:0045892 "negative regulation of
            transcription, DNA-dependent" evidence=IMP] [GO:0048589
            "developmental growth" evidence=IMP] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002684 GO:GO:0045892 GO:GO:0000166 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0048589 EMBL:AC012654 KO:K14407
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            GO:GO:0031123 HSSP:P33240 UniGene:At.12026 EMBL:AK229116
            IPI:IPI00522487 PIR:E96740 RefSeq:NP_177325.2 UniGene:At.22646
            SMR:Q9M9G6 IntAct:Q9M9G6 STRING:Q9M9G6 EnsemblPlants:AT1G71800.1
            GeneID:843510 KEGG:ath:AT1G71800 TAIR:At1g71800 InParanoid:Q9M9G6
            OMA:NADRNRE ProtClustDB:CLSN2714792 Genevestigator:Q9M9G6
            Uniprot:Q9M9G6
        Length = 461

 Score = 140 (54.3 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 32/110 (29%), Positives = 56/110 (50%)

Query:   180 RCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKD 239
             RC+ V  +    TE+Q+  I  + GPV    +V D +TG+ +G+ F  ++  + A +A+ 
Sbjct:     9 RCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARR 68

Query:   240 ACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRP---TYEQLNNTQSELG 286
                  EI+GRQ+RVDF+   +    T     G P   +   +  +Q ++G
Sbjct:    69 NLQSYEINGRQLRVDFAENDKGTDKTRDQSQGGPGLPSTTTVTESQKQIG 118


>TAIR|locus:2136298 [details] [associations]
            symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
            cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
            [GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
            "plasma membrane" evidence=IDA] [GO:0009651 "response to salt
            stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
            [GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
            "response to abscisic acid stimulus" evidence=IDA] [GO:0005829
            "cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
            [GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
            evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
            [GO:0000380 "alternative mRNA splicing, via spliceosome"
            evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
            GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
            EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
            GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
            EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
            HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
            EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
            IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
            ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
            STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
            EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
            TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
            Uniprot:Q03251
        Length = 169

 Score = 122 (48.0 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 28/75 (37%), Positives = 43/75 (57%)

Query:   180 RCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKD 239
             RC  V GL+  T ++ +   FS++G V   +++ D ++GRSRGF FV F+       A +
Sbjct:     7 RCF-VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65

Query:   240 ACTGMEIDGRQIRVD 254
                G E+DGR I V+
Sbjct:    66 EMNGKELDGRVITVN 80


>UNIPROTKB|Q8WUA2 [details] [associations]
            symbol:PPIL4 "Peptidyl-prolyl cis-trans isomerase-like 4"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006457
            "protein folding" evidence=IEA] [GO:0003755 "peptidyl-prolyl
            cis-trans isomerase activity" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002130
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153
            PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0006457 GO:GO:0000166 EMBL:CH471051
            Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 GO:GO:0003755
            SUPFAM:SSF50891 GO:GO:0000413 EMBL:AL078581 HOGENOM:HOG000186284
            KO:K12735 OMA:DRTQNRS EMBL:AF357880 EMBL:AK315388 EMBL:BX537536
            EMBL:AL357619 EMBL:BC020986 IPI:IPI00642862 RefSeq:NP_624311.1
            UniGene:Hs.740616 ProteinModelPortal:Q8WUA2 SMR:Q8WUA2
            IntAct:Q8WUA2 MINT:MINT-1182736 STRING:Q8WUA2 PhosphoSite:Q8WUA2
            DMDM:74760546 PaxDb:Q8WUA2 PeptideAtlas:Q8WUA2 PRIDE:Q8WUA2
            DNASU:85313 Ensembl:ENST00000253329 GeneID:85313 KEGG:hsa:85313
            UCSC:uc003qmo.2 CTD:85313 GeneCards:GC06M149867 HGNC:HGNC:15702
            HPA:HPA031600 MIM:607609 neXtProt:NX_Q8WUA2 PharmGKB:PA33590
            HOVERGEN:HBG057731 InParanoid:Q8WUA2 OrthoDB:EOG4QVCC7
            PhylomeDB:Q8WUA2 GenomeRNAi:85313 NextBio:75805 ArrayExpress:Q8WUA2
            Bgee:Q8WUA2 CleanEx:HS_PPIL4 Genevestigator:Q8WUA2
            GermOnline:ENSG00000131013 Uniprot:Q8WUA2
        Length = 492

 Score = 140 (54.3 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 31/79 (39%), Positives = 44/79 (55%)

Query:   178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAA 237
             P   L V  L+  TT++ +  IFS++GP+   EV+ D KTG S  + F+ FE  +D   A
Sbjct:   238 PENVLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKA 297

Query:   238 KDACTGMEIDGRQIRVDFS 256
                   + ID R+I VDFS
Sbjct:   298 FFKMDNVLIDDRRIHVDFS 316


>ZFIN|ZDB-GENE-040825-2 [details] [associations]
            symbol:snrnp70 "small nuclear ribonucleoprotein 70
            (U1)" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0060218 "hematopoietic stem cell differentiation" evidence=IMP]
            [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-040825-2 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0060218 GO:GO:0030529
            KO:K11093 OMA:KKSRGYL InterPro:IPR022023 Pfam:PF12220 CTD:6625
            GeneTree:ENSGT00530000063750 EMBL:BX324157 EMBL:AY648811
            IPI:IPI00817875 RefSeq:NP_001003875.1 UniGene:Dr.35845
            STRING:Q6DRE8 Ensembl:ENSDART00000055279 GeneID:445398
            KEGG:dre:445398 InParanoid:Q6DRE8 NextBio:20832103 Uniprot:Q6DRE8
        Length = 495

 Score = 140 (54.3 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 27/75 (36%), Positives = 45/75 (60%)

Query:   180 RCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKD 239
             + L V  ++  TTE ++   F  YGP++R+ +V + KTG+ RG+ F+ +E   D  +A  
Sbjct:   103 KTLFVARINYDTTESKLRREFEVYGPIKRIYIVYNKKTGKPRGYAFIEYEHERDMHSAYK 162

Query:   240 ACTGMEIDGRQIRVD 254
                G +IDGR++ VD
Sbjct:   163 HADGKKIDGRRVLVD 177


>UNIPROTKB|P30352 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
            species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427
            EMBL:X62446 IPI:IPI00591371 PIR:B42701 RefSeq:NP_001001305.1
            UniGene:Gga.9923 ProteinModelPortal:P30352 SMR:P30352 PRIDE:P30352
            GeneID:396195 KEGG:gga:396195 NextBio:20816247 Uniprot:P30352
        Length = 221

 Score = 132 (51.5 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 33/87 (37%), Positives = 44/87 (50%)

Query:   172 GRENP--QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFE 229
             GR  P  +    L V  L+  T+   +  +F KYG V  V +  D  T  SRGF FV F 
Sbjct:     4 GRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFH 63

Query:   230 SRDDAAAAKDACTGMEIDGRQIRVDFS 256
              + DA  A DA  G  +DGR++RV  +
Sbjct:    64 DKRDAEDAMDAMDGAVLDGRELRVQMA 90


>UNIPROTKB|Q3MHR5 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
            species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
            [GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
            GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0005681 GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
            GeneTree:ENSGT00700000104403 KO:K12891 EMBL:BC105138
            IPI:IPI00690339 RefSeq:NP_001029490.1 UniGene:Bt.2466
            ProteinModelPortal:Q3MHR5 SMR:Q3MHR5 STRING:Q3MHR5 PRIDE:Q3MHR5
            Ensembl:ENSBTAT00000024299 GeneID:508312 KEGG:bta:508312 CTD:6427
            InParanoid:Q3MHR5 OMA:DHRRRTR OrthoDB:EOG4D26RH NextBio:20868455
            Uniprot:Q3MHR5
        Length = 221

 Score = 132 (51.5 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 33/87 (37%), Positives = 44/87 (50%)

Query:   172 GRENP--QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFE 229
             GR  P  +    L V  L+  T+   +  +F KYG V  V +  D  T  SRGF FV F 
Sbjct:     4 GRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFH 63

Query:   230 SRDDAAAAKDACTGMEIDGRQIRVDFS 256
              + DA  A DA  G  +DGR++RV  +
Sbjct:    64 DKRDAEDAMDAMDGAVLDGRELRVQMA 90


>UNIPROTKB|E2RDB2 [details] [associations]
            symbol:SRSF2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0016607 "nuclear speck" evidence=IEA]
            [GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676
            GeneTree:ENSGT00700000104403 KO:K12891 OMA:DHRRRTR
            EMBL:AAEX03006277 RefSeq:XP_003639286.1 RefSeq:XP_003639287.1
            ProteinModelPortal:E2RDB2 Ensembl:ENSCAFT00000008286
            GeneID:100856058 KEGG:cfa:100856058 NextBio:20898320 Uniprot:E2RDB2
        Length = 221

 Score = 132 (51.5 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 33/87 (37%), Positives = 44/87 (50%)

Query:   172 GRENP--QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFE 229
             GR  P  +    L V  L+  T+   +  +F KYG V  V +  D  T  SRGF FV F 
Sbjct:     4 GRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFH 63

Query:   230 SRDDAAAAKDACTGMEIDGRQIRVDFS 256
              + DA  A DA  G  +DGR++RV  +
Sbjct:    64 DKRDAEDAMDAMDGAVLDGRELRVQMA 90


>UNIPROTKB|Q01130 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
            "spliceosomal complex" evidence=IEA] [GO:0016605 "PML body"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0003714
            "transcription corepressor activity" evidence=NAS] [GO:0016607
            "nuclear speck" evidence=IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0006397 "mRNA processing" evidence=TAS]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
            [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
            from RNA polymerase II promoter" evidence=TAS] [GO:0006369
            "termination of RNA polymerase II transcription" evidence=TAS]
            [GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
            "RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
            evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
            Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0003714
            GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330
            GO:GO:0005681 GO:GO:0003723 EMBL:CH471099 GO:GO:0006406
            GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006369 GO:GO:0031124
            HOVERGEN:HBG107480 Reactome:REACT_78 eggNOG:NOG254270 KO:K12891
            CTD:6427 OMA:DHRRRTR EMBL:M90104 EMBL:X62447 EMBL:X75755
            EMBL:BT007250 EMBL:AK124792 EMBL:BC000339 EMBL:BC001303
            EMBL:BC070086 EMBL:L03693 IPI:IPI00005978 RefSeq:NP_001182356.1
            RefSeq:NP_003007.2 UniGene:Hs.584801 PDB:2KN4 PDB:2LEA PDB:2LEB
            PDB:2LEC PDBsum:2KN4 PDBsum:2LEA PDBsum:2LEB PDBsum:2LEC
            ProteinModelPortal:Q01130 SMR:Q01130 IntAct:Q01130
            MINT:MINT-2863034 STRING:Q01130 PhosphoSite:Q01130 DMDM:60416437
            PaxDb:Q01130 PeptideAtlas:Q01130 PRIDE:Q01130 DNASU:6427
            Ensembl:ENST00000359995 Ensembl:ENST00000392485
            Ensembl:ENST00000452355 Ensembl:ENST00000585202 GeneID:6427
            KEGG:hsa:6427 UCSC:uc002jsv.3 GeneCards:GC17M074731 HGNC:HGNC:10783
            MIM:600813 neXtProt:NX_Q01130 PharmGKB:PA35699 InParanoid:Q01130
            ChiTaRS:SRSF2 EvolutionaryTrace:Q01130 GenomeRNAi:6427
            NextBio:24961 ArrayExpress:Q01130 Bgee:Q01130 CleanEx:HS_SFRS2
            Genevestigator:Q01130 GermOnline:ENSG00000161547 Uniprot:Q01130
        Length = 221

 Score = 132 (51.5 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 33/87 (37%), Positives = 44/87 (50%)

Query:   172 GRENP--QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFE 229
             GR  P  +    L V  L+  T+   +  +F KYG V  V +  D  T  SRGF FV F 
Sbjct:     4 GRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFH 63

Query:   230 SRDDAAAAKDACTGMEIDGRQIRVDFS 256
              + DA  A DA  G  +DGR++RV  +
Sbjct:    64 DKRDAEDAMDAMDGAVLDGRELRVQMA 90


>UNIPROTKB|Q06A98 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
            species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427 EMBL:DQ972966
            RefSeq:NP_001070697.1 UniGene:Ssc.1002 ProteinModelPortal:Q06A98
            SMR:Q06A98 GeneID:768117 KEGG:ssc:768117 Uniprot:Q06A98
        Length = 221

 Score = 132 (51.5 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 33/87 (37%), Positives = 44/87 (50%)

Query:   172 GRENP--QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFE 229
             GR  P  +    L V  L+  T+   +  +F KYG V  V +  D  T  SRGF FV F 
Sbjct:     4 GRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFH 63

Query:   230 SRDDAAAAKDACTGMEIDGRQIRVDFS 256
              + DA  A DA  G  +DGR++RV  +
Sbjct:    64 DKRDAEDAMDAMDGAVLDGRELRVQMA 90


>MGI|MGI:98284 [details] [associations]
            symbol:Srsf2 "serine/arginine-rich splicing factor 2"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
            [GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0016607 "nuclear speck" evidence=ISO;IDA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            MGI:MGI:98284 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
            HOVERGEN:HBG107480 UniGene:Mm.429312 eggNOG:NOG254270
            GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OMA:DHRRRTR
            OrthoDB:EOG4D26RH ChiTaRS:SRSF2 EMBL:U14648 EMBL:AF077858
            EMBL:AK086103 EMBL:AK088042 EMBL:AK165670 EMBL:BC005493 EMBL:X98511
            IPI:IPI00121135 PIR:A55335 RefSeq:NP_035488.1 UniGene:Mm.21841
            UniGene:Mm.469331 ProteinModelPortal:Q62093 SMR:Q62093
            DIP:DIP-44831N IntAct:Q62093 STRING:Q62093 PhosphoSite:Q62093
            PaxDb:Q62093 PRIDE:Q62093 Ensembl:ENSMUST00000092404
            Ensembl:ENSMUST00000136914 GeneID:20382 KEGG:mmu:20382
            NextBio:298298 Bgee:Q62093 CleanEx:MM_SFRS2 Genevestigator:Q62093
            GermOnline:ENSMUSG00000034120 Uniprot:Q62093
        Length = 221

 Score = 132 (51.5 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 33/87 (37%), Positives = 44/87 (50%)

Query:   172 GRENP--QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFE 229
             GR  P  +    L V  L+  T+   +  +F KYG V  V +  D  T  SRGF FV F 
Sbjct:     4 GRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFH 63

Query:   230 SRDDAAAAKDACTGMEIDGRQIRVDFS 256
              + DA  A DA  G  +DGR++RV  +
Sbjct:    64 DKRDAEDAMDAMDGAVLDGRELRVQMA 90


>RGD|1359422 [details] [associations]
            symbol:Srsf2 "serine/arginine-rich splicing factor 2"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0016607 "nuclear speck"
            evidence=IEA;ISO] [GO:0016605 "PML body" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:1359422 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
            eggNOG:NOG254270 GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427
            OrthoDB:EOG4D26RH EMBL:BC058508 IPI:IPI00389420
            RefSeq:NP_001009720.1 UniGene:Rn.136644 ProteinModelPortal:Q6PDU1
            SMR:Q6PDU1 STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
            Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
            NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
            Uniprot:Q6PDU1
        Length = 221

 Score = 132 (51.5 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 33/87 (37%), Positives = 44/87 (50%)

Query:   172 GRENP--QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFE 229
             GR  P  +    L V  L+  T+   +  +F KYG V  V +  D  T  SRGF FV F 
Sbjct:     4 GRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFH 63

Query:   230 SRDDAAAAKDACTGMEIDGRQIRVDFS 256
              + DA  A DA  G  +DGR++RV  +
Sbjct:    64 DKRDAEDAMDAMDGAVLDGRELRVQMA 90


>UNIPROTKB|Q6PDU1 [details] [associations]
            symbol:Srsf2 "Serine/arginine-rich splicing factor 2"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:1359422 GO:GO:0005634
            GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
            GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OrthoDB:EOG4D26RH
            EMBL:BC058508 IPI:IPI00389420 RefSeq:NP_001009720.1
            UniGene:Rn.136644 ProteinModelPortal:Q6PDU1 SMR:Q6PDU1
            STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
            Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
            NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
            Uniprot:Q6PDU1
        Length = 221

 Score = 132 (51.5 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 33/87 (37%), Positives = 44/87 (50%)

Query:   172 GRENP--QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFE 229
             GR  P  +    L V  L+  T+   +  +F KYG V  V +  D  T  SRGF FV F 
Sbjct:     4 GRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFH 63

Query:   230 SRDDAAAAKDACTGMEIDGRQIRVDFS 256
              + DA  A DA  G  +DGR++RV  +
Sbjct:    64 DKRDAEDAMDAMDGAVLDGRELRVQMA 90


>MGI|MGI:1343045 [details] [associations]
            symbol:Rbmxl1 "RNA binding motif protein, X linked-like-1"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
            evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003682 "chromatin binding" evidence=IDA] [GO:0003723 "RNA
            binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0006376 "mRNA splice site
            selection" evidence=ISO] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0044530
            "supraspliceosomal complex" evidence=ISO] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=IMP;IDA] [GO:0048025 "negative regulation of mRNA
            splicing, via spliceosome" evidence=ISO] [GO:0048026 "positive
            regulation of mRNA splicing, via spliceosome" evidence=ISO]
            [GO:0051260 "protein homooligomerization" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1343045 GO:GO:0008380 GO:GO:0000166
            GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682 GO:GO:0006366
            GO:GO:0006509 GO:GO:0001047 GO:GO:0005719 GO:GO:0071347
            GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026
            GO:GO:0000381 GO:GO:0044530 HSSP:Q61474
            GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
            HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
            CTD:494115 EMBL:AF031568 EMBL:AK041927 EMBL:BC011441 EMBL:BC089350
            IPI:IPI00663587 RefSeq:NP_001239018.1 RefSeq:NP_033059.2
            UniGene:Mm.24718 ProteinModelPortal:Q91VM5 SMR:Q91VM5 IntAct:Q91VM5
            STRING:Q91VM5 PhosphoSite:Q91VM5 PaxDb:Q91VM5 PRIDE:Q91VM5
            Ensembl:ENSMUST00000049245 GeneID:19656 KEGG:mmu:19656
            UCSC:uc009mhz.1 InParanoid:Q91VM5 OMA:ILLMKDR OrthoDB:EOG4001KF
            NextBio:296934 Bgee:Q91VM5 Genevestigator:Q91VM5 Uniprot:Q91VM5
        Length = 388

 Score = 138 (53.6 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 32/82 (39%), Positives = 50/82 (60%)

Query:   174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDD 233
             E  +P + L + GL+  T E+ +  +F KYG +  + ++ D +T +SRGF FV FES  D
Sbjct:     3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPAD 61

Query:   234 AA-AAKDACTGMEIDGRQIRVD 254
             A  AA+D   G  +DG+ I+V+
Sbjct:    62 AKDAARDM-NGKSLDGKAIKVE 82


>UNIPROTKB|K7GMF5 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
            Ensembl:ENSSSCT00000032763 Uniprot:K7GMF5
        Length = 80

 Score = 117 (46.2 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 28/67 (41%), Positives = 41/67 (61%)

Query:   174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDD 233
             E  +P + L + GL+  T E+ +  +F KYG +  V ++ D +T +SRGF FV FES  D
Sbjct:     5 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 63

Query:   234 AA-AAKD 239
             A  AA+D
Sbjct:    64 AKDAARD 70


>UNIPROTKB|K7GQ39 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
            Ensembl:ENSSSCT00000033155 Uniprot:K7GQ39
        Length = 101

 Score = 117 (46.2 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 28/67 (41%), Positives = 41/67 (61%)

Query:   174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDD 233
             E  +P + L + GL+  T E+ +  +F KYG +  V ++ D +T +SRGF FV FES  D
Sbjct:     5 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 63

Query:   234 AA-AAKD 239
             A  AA+D
Sbjct:    64 AKDAARD 70


>TAIR|locus:2049816 [details] [associations]
            symbol:AT2G37510 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
            Gene3D:3.30.70.330 EMBL:AC005896 GO:GO:0003676 HOGENOM:HOG000276232
            HSSP:P11940 EMBL:AY084740 EMBL:BT028941 IPI:IPI00545899 PIR:F84793
            RefSeq:NP_181287.1 UniGene:At.37414 ProteinModelPortal:Q8S8L4
            SMR:Q8S8L4 PRIDE:Q8S8L4 EnsemblPlants:AT2G37510.1 GeneID:818327
            KEGG:ath:AT2G37510 TAIR:At2g37510 eggNOG:NOG305672
            InParanoid:Q8S8L4 OMA:NKTIGWC PhylomeDB:Q8S8L4
            ProtClustDB:CLSN2683075 ArrayExpress:Q8S8L4 Genevestigator:Q8S8L4
            Uniprot:Q8S8L4
        Length = 142

 Score = 117 (46.2 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 33/105 (31%), Positives = 51/105 (48%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L V GLS  TT +++   F+ +G +    V+ D  +GRS+GF FV + + +DA  AK   
Sbjct:    36 LFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEM 95

Query:   242 TGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTYEQLNNTQSELG 286
                 +DG  I VD +  +    P     + RP+ E    T   +G
Sbjct:    96 NAKFLDGWVIFVDPARPREPRRPLQQEPL-RPSSESGFTTNKTIG 139


>UNIPROTKB|F1P661 [details] [associations]
            symbol:PPIL4 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0006457 "protein folding" evidence=IEA]
            [GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002130 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160
            PRINTS:PR00153 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
            GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
            GeneTree:ENSGT00670000097658 EMBL:AAEX03000263
            Ensembl:ENSCAFT00000000593 OMA:ERDGHYG NextBio:20858300
            Uniprot:F1P661
        Length = 526

 Score = 140 (54.3 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 31/79 (39%), Positives = 44/79 (55%)

Query:   178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAA 237
             P   L V  L+  TT++ +  IFS++GP+   EV+ D KTG S  + F+ FE  +D   A
Sbjct:   272 PENVLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKA 331

Query:   238 KDACTGMEIDGRQIRVDFS 256
                   + ID R+I VDFS
Sbjct:   332 FFKMDNVLIDDRRIHVDFS 350


>UNIPROTKB|E1BRU3 [details] [associations]
            symbol:LOC100858247 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005813 "centrosome" evidence=IEA] InterPro:IPR000504
            InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
            OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AADN02019511
            IPI:IPI00601860 Ensembl:ENSGALT00000002354 Uniprot:E1BRU3
        Length = 529

 Score = 137 (53.3 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
 Identities = 33/110 (30%), Positives = 59/110 (53%)

Query:   178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAA 237
             P R L V  L    TE  +  IF  +G +E +++++D++TGRS+G+ F+ F   + A  A
Sbjct:   249 PMR-LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA 307

Query:   238 KDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTYEQLNNTQSELGS 287
              +   G E+ GR ++V   VT+R    +   ++     ++L  T  +LG+
Sbjct:   308 LEQLNGFELAGRPMKVGH-VTERTDASSASSFLDS---DELERTGIDLGT 353

 Score = 44 (20.5 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
 Identities = 9/14 (64%), Positives = 10/14 (71%)

Query:    74 RSRSGSPHRRSKRP 87
             RSRS SP R+ K P
Sbjct:   124 RSRSKSPFRKDKSP 137

 Score = 43 (20.2 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
 Identities = 15/47 (31%), Positives = 24/47 (51%)

Query:    50 YRLSPARSGSAGSIDD--KKYRKSITRSRSGSPHRRSKRPQVACGRD 94
             Y+    +  SA   ++  KK +KS +RSRS    +RS+  +    RD
Sbjct:    15 YKKDENKLSSANGHEERSKKRKKSKSRSRSHD-RKRSRSKERKRSRD 60

 Score = 37 (18.1 bits), Expect = 8.2e-06, Sum P(2) = 8.2e-06
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query:    56 RSGSAGSIDDKKYRKSITRSRSGSPHRRSKR 86
             +S S     D+K  +S  R RS    R+  R
Sbjct:    37 KSKSRSRSHDRKRSRSKERKRSRDRERKKSR 67


>UNIPROTKB|F1P336 [details] [associations]
            symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
            EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
            Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
        Length = 689

 Score = 141 (54.7 bits), Expect = 1.7e-06, P = 1.7e-06
 Identities = 35/80 (43%), Positives = 47/80 (58%)

Query:   177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAA 236
             Q S+ L V GLS  TTE+ +   F   G +    +V D  TG S+GF FV F S +DA A
Sbjct:   548 QQSKTLFVRGLSEDTTEETLRESFE--GSIS-ARIVTDRDTGSSKGFGFVDFSSPEDAKA 604

Query:   237 AKDACTGMEIDGRQIRVDFS 256
             AK+A    EIDG ++ +DF+
Sbjct:   605 AKEAMEDGEIDGNKVTLDFA 624


>UNIPROTKB|F1NU40 [details] [associations]
            symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
            "angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
            [GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
            DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
            GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
            GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
            EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
            ArrayExpress:F1NU40 Uniprot:F1NU40
        Length = 691

 Score = 141 (54.7 bits), Expect = 1.7e-06, P = 1.7e-06
 Identities = 35/80 (43%), Positives = 47/80 (58%)

Query:   177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAA 236
             Q S+ L V GLS  TTE+ +   F   G +    +V D  TG S+GF FV F S +DA A
Sbjct:   550 QQSKTLFVRGLSEDTTEETLRESFE--GSIS-ARIVTDRDTGSSKGFGFVDFSSPEDAKA 606

Query:   237 AKDACTGMEIDGRQIRVDFS 256
             AK+A    EIDG ++ +DF+
Sbjct:   607 AKEAMEDGEIDGNKVTLDFA 626


>UNIPROTKB|P15771 [details] [associations]
            symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
            GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
            HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
            IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
            ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
            GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
            InParanoid:P15771 NextBio:20816253 Uniprot:P15771
        Length = 694

 Score = 141 (54.7 bits), Expect = 1.7e-06, P = 1.7e-06
 Identities = 35/80 (43%), Positives = 47/80 (58%)

Query:   177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAA 236
             Q S+ L V GLS  TTE+ +   F   G +    +V D  TG S+GF FV F S +DA A
Sbjct:   550 QQSKTLFVRGLSEDTTEETLRESFE--GSIS-ARIVTDRDTGSSKGFGFVDFSSPEDAKA 606

Query:   237 AKDACTGMEIDGRQIRVDFS 256
             AK+A    EIDG ++ +DF+
Sbjct:   607 AKEAMEDGEIDGNKVTLDFA 626


>UNIPROTKB|E1P5S2 [details] [associations]
            symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
            "nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
            [GO:0015630 "microtubule cytoskeleton" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0005813 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
            UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39 IPI:IPI01015916
            SMR:E1P5S2 Ensembl:ENST00000407261 UCSC:uc002xed.3 Uniprot:E1P5S2
        Length = 373

 Score = 137 (53.3 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 33/110 (30%), Positives = 59/110 (53%)

Query:   178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAA 237
             P R L V  L    TE  +  IF  +G +E +++++D++TGRS+G+ F+ F   + A  A
Sbjct:    92 PMR-LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA 150

Query:   238 KDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTYEQLNNTQSELGS 287
              +   G E+ GR ++V   VT+R    +   ++     ++L  T  +LG+
Sbjct:   151 LEQLNGFELAGRPMKVGH-VTERTDASSASSFLDS---DELERTGIDLGT 196


>UNIPROTKB|F6VZ39 [details] [associations]
            symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109955
            HGNC:HGNC:15818 IPI:IPI00927190 ProteinModelPortal:F6VZ39
            SMR:F6VZ39 PRIDE:F6VZ39 Ensembl:ENST00000344785 ArrayExpress:F6VZ39
            Bgee:F6VZ39 Uniprot:F6VZ39
        Length = 123

 Score = 116 (45.9 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 28/75 (37%), Positives = 42/75 (56%)

Query:   184 VFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTG 243
             V GL  +TT+  +   F  +G +E   V+ D +TG+SRG+ FV   +  D AAA+ AC  
Sbjct:    15 VGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFV---TMADRAAAERACKD 71

Query:   244 ME--IDGRQIRVDFS 256
                 IDGR+  V+ +
Sbjct:    72 PNPIIDGRKANVNLA 86


>UNIPROTKB|F8W646 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022306
            ProteinModelPortal:F8W646 SMR:F8W646 PRIDE:F8W646
            Ensembl:ENST00000547708 ArrayExpress:F8W646 Bgee:F8W646
            Uniprot:F8W646
        Length = 156

 Score = 116 (45.9 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 30/101 (29%), Positives = 55/101 (54%)

Query:   170 ADGRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFE 229
             ++  + P+  R L + GLS  TT++ +   F ++G +    V+ D  T RSRGF FV + 
Sbjct:     4 SESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYA 63

Query:   230 SRDDAAAAKDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYM 270
             + ++  AA +A    ++DGR +    +V+ R  +  PG ++
Sbjct:    64 TVEEVDAAMNA-RPHKVDGRVVEPKRAVS-REDSQRPGAHL 102


>UNIPROTKB|I3LIU9 [details] [associations]
            symbol:LOC100621482 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0045292 "mRNA cis splicing, via spliceosome"
            evidence=IEA] [GO:0005846 "nuclear cap binding complex"
            evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            PANTHER:PTHR18847 GeneTree:ENSGT00390000003197
            Ensembl:ENSSSCT00000027593 OMA:GYGKMCK Uniprot:I3LIU9
        Length = 148

 Score = 116 (45.9 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 30/74 (40%), Positives = 40/74 (54%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L V  LS YTTE+QI  +FSK G ++++ +          GFCFV + SR DA  A    
Sbjct:    42 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMAC--------GFCFVEYYSRADAENAMRYI 93

Query:   242 TGMEIDGRQIRVDF 255
              G  +D R IR D+
Sbjct:    94 NGTRLDDRIIRTDW 107


>RGD|1309982 [details] [associations]
            symbol:Hnrnpc "heterogeneous nuclear ribonucleoprotein C
            (C1/C2)" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634 "nucleus"
            evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0042802 "identical protein binding"
            evidence=ISO] [GO:0045120 "pronucleus" evidence=ISO] [GO:0071013
            "catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1309982 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724
            HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:X16933 IPI:IPI00213609
            PIR:S09017 UniGene:Rn.101929 ProteinModelPortal:P17132 SMR:P17132
            STRING:P17132 PRIDE:P17132 UCSC:RGD:1309982 ArrayExpress:P17132
            Genevestigator:P17132 GermOnline:ENSRNOG00000002292 Uniprot:P17132
        Length = 158

 Score = 116 (45.9 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 23/63 (36%), Positives = 37/63 (58%)

Query:   170 ADGRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFE 229
             A   +  +P + + V GLS  T E++I   F  +G VE +E+ +D KT + RGFCF+ F+
Sbjct:    24 AKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK 83

Query:   230 SRD 232
               +
Sbjct:    84 EEE 86


>ZFIN|ZDB-GENE-040426-2852 [details] [associations]
            symbol:rbm39a "RNA binding motif protein 39a"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-040426-2852 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HSSP:P11940
            HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 HOGENOM:HOG000236253
            KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
            GeneTree:ENSGT00690000102089 EMBL:BX001056 EMBL:BC044487
            IPI:IPI00498221 RefSeq:NP_001012304.1 UniGene:Dr.38353 SMR:Q803H1
            Ensembl:ENSDART00000017973 Ensembl:ENSDART00000135435 GeneID:406251
            KEGG:dre:406251 CTD:406251 NextBio:20817886 Uniprot:Q803H1
        Length = 523

 Score = 139 (54.0 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
 Identities = 33/110 (30%), Positives = 59/110 (53%)

Query:   178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAA 237
             P R L V  L    TE  +  IF  +G ++ +++++D++TGRS+G+ F+ F   + A  A
Sbjct:   245 PMR-LYVGSLHFNITEDMLRGIFEPFGRIDSIQLMMDSETGRSKGYGFITFSDAECAKKA 303

Query:   238 KDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTYEQLNNTQSELGS 287
              +   G E+ GR ++V   VT+R    T   ++     ++L  T  +LG+
Sbjct:   304 LEQLNGFELAGRPMKVGH-VTERTDASTASSFLDN---DELERTGIDLGT 349

 Score = 40 (19.1 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query:    50 YRLSPARSGSAGSIDDKKYRKSITRSRSGSPHR-RSK 85
             Y+    +S S    +++  +K  ++SRS S  R RSK
Sbjct:    15 YKKDDNKSLSTNGHEERSKKKKRSKSRSRSRDRKRSK 51

 Score = 38 (18.4 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
 Identities = 7/14 (50%), Positives = 10/14 (71%)

Query:    74 RSRSGSPHRRSKRP 87
             RSRS SP ++ + P
Sbjct:   120 RSRSRSPFKKDRSP 133


>UNIPROTKB|Q83D11 [details] [associations]
            symbol:CBU_0935 "RNA binding protein" species:227377
            "Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
            RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
            KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
            ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
            Uniprot:Q83D11
        Length = 129

 Score = 115 (45.5 bits), Expect = 2.5e-06, P = 2.5e-06
 Identities = 27/83 (32%), Positives = 47/83 (56%)

Query:   184 VFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTG 243
             V  L  +  E  ++  FS++G +E V++V + +TGRS+G+ FV + +   A  A DA  G
Sbjct:    48 VGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKALDA-HG 106

Query:   244 MEIDGRQIRVDFSVT---QRAHT 263
              ++ GR + V  + +   Q A+T
Sbjct:   107 KDLQGRSLVVRIAKSREQQHAYT 129


>TIGR_CMR|CBU_0935 [details] [associations]
            symbol:CBU_0935 "RNA-binding protein" species:227377
            "Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
            evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
            RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
            KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
            ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
            Uniprot:Q83D11
        Length = 129

 Score = 115 (45.5 bits), Expect = 2.5e-06, P = 2.5e-06
 Identities = 27/83 (32%), Positives = 47/83 (56%)

Query:   184 VFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTG 243
             V  L  +  E  ++  FS++G +E V++V + +TGRS+G+ FV + +   A  A DA  G
Sbjct:    48 VGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKALDA-HG 106

Query:   244 MEIDGRQIRVDFSVT---QRAHT 263
              ++ GR + V  + +   Q A+T
Sbjct:   107 KDLQGRSLVVRIAKSREQQHAYT 129


>UNIPROTKB|F1NH82 [details] [associations]
            symbol:F1NH82 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
            EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
            Ensembl:ENSGALT00000023332 Uniprot:F1NH82
        Length = 469

 Score = 129 (50.5 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
 Identities = 25/61 (40%), Positives = 41/61 (67%)

Query:   193 EQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIR 252
             ++++  +F K+GP   V+V+ D ++G+S+GF FV FE  +DA  A D   G E++G+QI 
Sbjct:    36 DERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 94

Query:   253 V 253
             V
Sbjct:    95 V 95

 Score = 49 (22.3 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
 Identities = 17/53 (32%), Positives = 26/53 (49%)

Query:   276 EQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIXXXX-XXXXXXMTEMSGNGRI 327
             E+L    S  G++ S K  ++GG+  + FG +           +TEM  NGRI
Sbjct:   140 ERLRKEFSPFGTITSAKVMMEGGR-SKGFGFVCFSSPEEATKAVTEM--NGRI 189


>UNIPROTKB|P0DJD4 [details] [associations]
            symbol:RBMY1C "RNA-binding motif protein, Y chromosome,
            family 1 member C" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            InterPro:IPR012604 Pfam:PF08081 IPI:IPI00332760 IPI:IPI00872545
            IPI:IPI00872656 PIR:A49418 DMDM:27805716 HPA:HPA001534 MIM:400006
            CleanEx:HS_RBMY1A1 GermOnline:ENSG00000174622 EMBL:U36608
            EMBL:U36604 EMBL:U36605 EMBL:U36606 EMBL:U36607 EMBL:U36610
            EMBL:U36609 ProteinModelPortal:P0DJD4 SMR:P0DJD4 PRIDE:P0DJD4
            GeneCards:GC0YU900014 HGNC:HGNC:9914 neXtProt:NX_P0DJD4
            Uniprot:P0DJD4
        Length = 496

 Score = 137 (53.3 bits), Expect = 3.0e-06, P = 3.0e-06
 Identities = 43/126 (34%), Positives = 68/126 (53%)

Query:   174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDD 233
             E   P + L + GL+  T E+ +  +F K+GP+  V ++ D +T +SRGF F+ FE+  D
Sbjct:     3 EADHPGK-LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-RTSKSRGFAFITFENPAD 60

Query:   234 AA-AAKDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEK 292
             A  AAKD   G  + G+ I+V+ +  Q+    + G    RP     N + S  GSL S +
Sbjct:    61 AKNAAKDM-NGKSLHGKAIKVEQA--QKPSFQSGG--RRRPPASSRNRSPS--GSLRSAR 113

Query:   293 HAIKGG 298
              + +GG
Sbjct:   114 GS-RGG 118


>UNIPROTKB|F1P6U2 [details] [associations]
            symbol:SNRNP35 "Uncharacterized protein" species:9615
            "Canis lupus familiaris" [GO:0005689 "U12-type spliceosomal
            complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GO:GO:0005689 GeneTree:ENSGT00530000063750 CTD:11066 KO:K13155
            OMA:QHEVFVD EMBL:AAEX03014640 RefSeq:XP_534648.2
            ProteinModelPortal:F1P6U2 Ensembl:ENSCAFT00000011983 GeneID:477450
            KEGG:cfa:477450 Uniprot:F1P6U2
        Length = 246

 Score = 131 (51.2 bits), Expect = 3.0e-06, P = 3.0e-06
 Identities = 30/81 (37%), Positives = 48/81 (59%)

Query:   178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFV-YFESRDDAAA 236
             P   L V  L++ T E+++  +FS+YG + R+ +V D  TG S+G+ F+ Y E R    A
Sbjct:    49 PLLTLFVARLNLQTKEEKLKEVFSRYGDIRRLRLVRDLVTGLSKGYAFIEYKEERSLIKA 108

Query:   237 AKDACTGMEIDGRQIRVDFSV 257
              +DA  G+ ID  +I VD+ +
Sbjct:   109 YRDA-DGLVIDQHEIFVDYEL 128


>ZFIN|ZDB-GENE-030131-6986 [details] [associations]
            symbol:ncl "nucleolin" species:7955 "Danio rerio"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-030131-6986 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 HOVERGEN:HBG002295 InterPro:IPR017859 PRINTS:PR01503
            EMBL:BC162643 IPI:IPI00485582 UniGene:Dr.75207
            ProteinModelPortal:B3DH54 STRING:B3DH54 ArrayExpress:B3DH54
            Uniprot:B3DH54
        Length = 708

 Score = 139 (54.0 bits), Expect = 3.0e-06, P = 3.0e-06
 Identities = 33/85 (38%), Positives = 48/85 (56%)

Query:   172 GRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESR 231
             GR N  P++ L V GLS  TT+Q +   F   G +    +  D  TG S+GF FV F++ 
Sbjct:   549 GRGNSGPTKTLFVKGLSDDTTDQTLKDSFD--GAIA-ARIATDRDTGSSKGFGFVDFDNE 605

Query:   232 DDAAAAKDACTGMEIDGRQIRVDFS 256
              D  AAK+A    EIDG ++ +D++
Sbjct:   606 QDCKAAKEAMDDGEIDGNKVTLDYA 630

 Score = 128 (50.1 bits), Expect = 5.0e-05, P = 5.0e-05
 Identities = 29/89 (32%), Positives = 46/89 (51%)

Query:   172 GRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESR 231
             GR  P  S+ L V  L+   +E  +  +F K      V + I    GR +G+ FV FE+ 
Sbjct:   460 GRGAPSASKVLVVNNLAFSASEDSLQSVFEK-----AVSIRIPQNNGRPKGYAFVEFENV 514

Query:   232 DDAAAAKDACTGMEIDGRQIRVDFSVTQR 260
             +D+  A + C   +I+GR IR+++S   R
Sbjct:   515 EDSKEALENCNNTDIEGRSIRLEYSQNDR 543


>UNIPROTKB|E1BUM0 [details] [associations]
            symbol:PPIE "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0003755 "peptidyl-prolyl cis-trans
            isomerase activity" evidence=IEA] [GO:0006457 "protein folding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002130
            InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
            Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
            PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
            GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
            GeneTree:ENSGT00690000101651 CTD:10450 KO:K09564 OMA:AFIEFEL
            EMBL:AADN02043740 EMBL:AADN02043741 EMBL:AADN02043742
            EMBL:AADN02043743 IPI:IPI00575389 RefSeq:XP_423739.2
            UniGene:Gga.4709 ProteinModelPortal:E1BUM0
            Ensembl:ENSGALT00000021831 GeneID:426061 KEGG:gga:426061
            NextBio:20827786 ArrayExpress:E1BUM0 Uniprot:E1BUM0
        Length = 301

 Score = 133 (51.9 bits), Expect = 3.1e-06, P = 3.1e-06
 Identities = 58/188 (30%), Positives = 82/188 (43%)

Query:   180 RCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKD 239
             R L V GL+    E+ ++  F  +G +  +++ +D +T + RGF FV FE  +DAAAA D
Sbjct:     6 RVLYVGGLAEEVDEKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65

Query:   240 ACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEKHAIKGG- 298
                  E+ GR IRV+ +   R    +      RP +      +   G  L E++  +GG 
Sbjct:    66 NMNESELFGRTIRVNLAKPMRIKEGS-----SRPVWSDDEWLKRFSGKTL-EENTEEGGT 119

Query:   299 ---KFEEVFGE--IXXXXXXXXXXMTEMSGN---GRISPLQFSG----GMENTDPICTQE 346
                K E   GE             M    GN   GRI  L  S      +EN   +CTQE
Sbjct:   120 EAPKSEAQEGEPPAKKSRANPQVYMDIKIGNKPAGRIKILLRSDVVPMTVENFRCLCTQE 179

Query:   347 KAKKMKKS 354
             K    K S
Sbjct:   180 KGFGFKGS 187


>UNIPROTKB|A4FV72 [details] [associations]
            symbol:PPIE "Peptidyl-prolyl cis-trans isomerase E"
            species:9913 "Bos taurus" [GO:0003755 "peptidyl-prolyl cis-trans
            isomerase activity" evidence=IEA] [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0006457 "protein folding" evidence=IEA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005681
            "spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002130 InterPro:IPR012677
            InterPro:IPR016304 InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160
            PIRSF:PIRSF001475 PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072
            PROSITE:PS50102 SMART:SM00360 GO:GO:0006457 GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
            GO:GO:0003723 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
            HOVERGEN:HBG001065 EMBL:BC123818 IPI:IPI00686175
            RefSeq:NP_001091630.1 UniGene:Bt.21742 ProteinModelPortal:A4FV72
            SMR:A4FV72 PRIDE:A4FV72 GeneID:787681 KEGG:bta:787681 CTD:10450
            KO:K09564 NextBio:20928622 Uniprot:A4FV72
        Length = 301

 Score = 133 (51.9 bits), Expect = 3.1e-06, P = 3.1e-06
 Identities = 55/187 (29%), Positives = 80/187 (42%)

Query:   180 RCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKD 239
             R L V GL+    ++ ++  F  +G +  +++ +D +T + RGF FV FE  +DAAAA D
Sbjct:     6 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65

Query:   240 ACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEKHAIKGG- 298
                  E+ GR IRV+ +   R    +      RP +   +  +   G  L E    +G  
Sbjct:    66 NMNESELFGRTIRVNLAKPMRIKEGS-----SRPVWSDDDWLKKFSGKTLEENKEEEGSE 120

Query:   299 --KFEEVFGE--IXXXXXXXXXXMTEMSGN---GRISPLQFSGGM----ENTDPICTQEK 347
               K E   GE  +          M    GN   GRI  L  S  +    EN   +CT EK
Sbjct:   121 PPKVETQEGEPAVKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEK 180

Query:   348 AKKMKKS 354
                 K S
Sbjct:   181 GFGFKGS 187


>UNIPROTKB|G3MZS9 [details] [associations]
            symbol:PPIE "Peptidyl-prolyl cis-trans isomerase E"
            species:9913 "Bos taurus" [GO:0006457 "protein folding"
            evidence=IEA] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR016304
            InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475
            PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102
            SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
            GeneTree:ENSGT00690000101651 UniGene:Bt.21742 OMA:AFIEFEL
            EMBL:DAAA02009142 Ensembl:ENSBTAT00000063035 Uniprot:G3MZS9
        Length = 301

 Score = 133 (51.9 bits), Expect = 3.1e-06, P = 3.1e-06
 Identities = 55/187 (29%), Positives = 80/187 (42%)

Query:   180 RCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKD 239
             R L V GL+    ++ ++  F  +G +  +++ +D +T + RGF FV FE  +DAAAA D
Sbjct:     6 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65

Query:   240 ACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTYEQLNNTQSELGSLLSEKHAIKGG- 298
                  E+ GR IRV+ +   R    +      RP +   +  +   G  L E    +G  
Sbjct:    66 NMNESELFGRTIRVNLAKPMRIKEGS-----SRPVWSDDDWLKKFSGKTLEENKEEEGSE 120

Query:   299 --KFEEVFGE--IXXXXXXXXXXMTEMSGN---GRISPLQFSGGM----ENTDPICTQEK 347
               K E   GE  +          M    GN   GRI  L  S  +    EN   +CT EK
Sbjct:   121 PPKVETQEGEPTVKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEK 180

Query:   348 AKKMKKS 354
                 K S
Sbjct:   181 GFGFKGS 187


>ASPGD|ASPL0000076731 [details] [associations]
            symbol:AN4865 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
            KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
            ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
            EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
            HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
        Length = 524

 Score = 137 (53.3 bits), Expect = 3.2e-06, P = 3.2e-06
 Identities = 35/94 (37%), Positives = 52/94 (55%)

Query:   169 FADGRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYF 228
             F D + +P+ S  L V  L     E  ++ +F   G V  + +  D ++GR +GF +V +
Sbjct:   375 FGD-QTSPE-SDTLFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQY 432

Query:   229 ESRDDAAAAKDACTGMEIDGRQIRVDFSVTQRAH 262
              S D+A  A +   G EIDGR IR+DFS T RA+
Sbjct:   433 SSVDEARKAYNELQGAEIDGRPIRLDFS-TPRAN 465

 Score = 127 (49.8 bits), Expect = 4.2e-05, P = 4.2e-05
 Identities = 31/86 (36%), Positives = 49/86 (56%)

Query:   182 LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
             L V  LS   TE+ ++  F ++G +    ++ +  TGRSRGF +V F +  DAA A +A 
Sbjct:   279 LFVGNLSWNVTEEWLHQEFEQFGELS-ARIMTERDTGRSRGFGYVEFTNAADAAKAYEAM 337

Query:   242 TGMEIDGRQIRVDFSVTQRAHTPTPG 267
                EIDGR+I +D++  + A+    G
Sbjct:   338 KEHEIDGRKINLDYATGRPANKDQGG 363


>UNIPROTKB|I3LN96 [details] [associations]
            symbol:SNRNP35 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
            GeneTree:ENSGT00530000063750 KO:K13155 OMA:QHEVFVD EMBL:CU468910
            RefSeq:XP_003359137.1 Ensembl:ENSSSCT00000023937 GeneID:100626152
            KEGG:ssc:100626152 Uniprot:I3LN96
        Length = 246

 Score = 130 (50.8 bits), Expect = 3.9e-06, P = 3.9e-06
 Identities = 30/81 (37%), Positives = 48/81 (59%)

Query:   178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFV-YFESRDDAAA 236
             P   L V  L++ T E+++  +FS+YG + R+ +V D  TG S+G+ F+ Y E R    A
Sbjct:    49 PLLTLFVARLNLQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERSLLKA 108

Query:   237 AKDACTGMEIDGRQIRVDFSV 257
              +DA  G+ ID  +I VD+ +
Sbjct:   109 YRDA-DGLVIDQHEIFVDYEL 128


>FB|FBgn0027841 [details] [associations]
            symbol:CstF-64 "Cleavage stimulation factor 64 kilodalton
            subunit" species:7227 "Drosophila melanogaster" [GO:0006379 "mRNA
            cleavage" evidence=ISS;NAS] [GO:0005848 "mRNA cleavage stimulating
            factor complex" evidence=ISS;NAS] [GO:0003729 "mRNA binding"
            evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0022008
            "neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0022008
            GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006379
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            HSSP:P33240 GO:GO:0005848 EMBL:BT004860 ProteinModelPortal:Q86NL1
            SMR:Q86NL1 STRING:Q86NL1 PRIDE:Q86NL1 FlyBase:FBgn0027841
            InParanoid:Q86NL1 OrthoDB:EOG4FBG8R ChiTaRS:CstF-64
            ArrayExpress:Q86NL1 Bgee:Q86NL1 Uniprot:Q86NL1
        Length = 437

 Score = 135 (52.6 bits), Expect = 4.0e-06, P = 4.0e-06
 Identities = 30/97 (30%), Positives = 54/97 (55%)

Query:   180 RCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKD 239
             R + V  +    TE+++  IFS+ GPV  +++V D ++G+ +GF F  ++ ++ A +A  
Sbjct:    16 RSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMR 75

Query:   240 ACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTYE 276
                G EI GR +RVD + T+++      +  G P  E
Sbjct:    76 NLNGYEIGGRTLRVDNACTEKSRMEMQQLLQG-PQVE 111


>UNIPROTKB|E9PID8 [details] [associations]
            symbol:CSTF2 "Cleavage stimulation factor subunit 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            InterPro:IPR025742 Pfam:PF14327 EMBL:Z83819 EMBL:Z95327
            HGNC:HGNC:2484 IPI:IPI01012987 ProteinModelPortal:E9PID8 SMR:E9PID8
            Ensembl:ENST00000475126 ArrayExpress:E9PID8 Bgee:E9PID8
            Uniprot:E9PID8
        Length = 438

 Score = 135 (52.6 bits), Expect = 4.0e-06, P = 4.0e-06
 Identities = 29/97 (29%), Positives = 50/97 (51%)

Query:   180 RCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKD 239
             R + V  +    TE+Q+  IFS+ GPV    +V D +TG+ +G+ F  ++ ++ A +A  
Sbjct:    16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75

Query:   240 ACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTYE 276
                G E  GR +RVD + +++       +  G P  E
Sbjct:    76 NLNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIE 112


>UNIPROTKB|E5RGV5 [details] [associations]
            symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
            HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00974016
            ProteinModelPortal:E5RGV5 SMR:E5RGV5 Ensembl:ENST00000474809
            ArrayExpress:E5RGV5 Bgee:E5RGV5 Uniprot:E5RGV5
        Length = 144

 Score = 113 (44.8 bits), Expect = 4.1e-06, P = 4.1e-06
 Identities = 29/85 (34%), Positives = 48/85 (56%)

Query:   174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDD 233
             E+  P + L V  LS   TE  I  +FS+ GP +  ++++D  T  +  +CFV F     
Sbjct:     2 EDEMP-KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRH 58

Query:   234 AAAAKDACTGMEIDGRQIRVDFSVT 258
             AAAA  A  G +I G++++V+++ T
Sbjct:    59 AAAALAAMNGRKIMGKEVKVNWATT 83


>RGD|1306751 [details] [associations]
            symbol:Rbmxrtl "RNA binding motif protein, X chromosome
            retrogene-like" species:10116 "Rattus norvegicus" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=IDA]
            [GO:0001047 "core promoter binding" evidence=ISO] [GO:0003682
            "chromatin binding" evidence=ISO] [GO:0003723 "RNA binding"
            evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=ISO;ISS] [GO:0005719 "nuclear euchromatin" evidence=ISS]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=ISS] [GO:0006376 "mRNA splice site selection"
            evidence=IDA] [GO:0006509 "membrane protein ectodomain proteolysis"
            evidence=ISS] [GO:0007275 "multicellular organismal development"
            evidence=IEA] [GO:0044530 "supraspliceosomal complex" evidence=IDA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=ISO;ISS] [GO:0048025 "negative
            regulation of mRNA splicing, via spliceosome" evidence=IDA]
            [GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
            evidence=IDA] [GO:0051260 "protein homooligomerization"
            evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
            evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=ISS] [GO:0071347 "cellular response to interleukin-1"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:1306751 GO:GO:0007275
            GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0006366 GO:GO:0006509
            GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
            eggNOG:COG0724 GO:GO:0048026 GO:GO:0006376 GO:GO:0000381
            GO:GO:0044530 GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
            HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
            OMA:ILLMKDR OrthoDB:EOG4001KF UniGene:Rn.19966 EMBL:AABR03113401
            IPI:IPI00559910 RefSeq:NP_001100890.1 ProteinModelPortal:P84586
            SMR:P84586 STRING:P84586 PhosphoSite:P84586 PRIDE:P84586
            Ensembl:ENSRNOT00000016184 GeneID:307779 KEGG:rno:307779
            UCSC:RGD:1306751 CTD:307779 InParanoid:P84586 NextBio:657858
            Genevestigator:P84586 GermOnline:ENSRNOG00000012138 Uniprot:P84586
        Length = 388

 Score = 134 (52.2 bits), Expect = 4.2e-06, P = 4.2e-06
 Identities = 31/82 (37%), Positives = 49/82 (59%)

Query:   174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDD 233
             E  +P + L + GL+  T E+ +  +F KYG +  + ++ D +T +SRGF FV FES  D
Sbjct:     3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPAD 61

Query:   234 AA-AAKDACTGMEIDGRQIRVD 254
             A   A+D   G  +DG+ I+V+
Sbjct:    62 AKDVARDM-NGKSLDGKAIKVE 82


>RGD|1585845 [details] [associations]
            symbol:Rbmxl1 "RNA binding motif protein, X-linked-like 1"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1585845 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529
            GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
            OrthoDB:EOG4CNQSK EMBL:AC136101 IPI:IPI00763272 UniGene:Rn.19966
            Ensembl:ENSRNOT00000041672 UCSC:RGD:1585845 Uniprot:D4AE41
        Length = 388

 Score = 134 (52.2 bits), Expect = 4.2e-06, P = 4.2e-06
 Identities = 31/82 (37%), Positives = 49/82 (59%)

Query:   174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDD 233
             E  +P + L + GL+  T E+ +  +F KYG +  + ++ D +T +SRGF FV FES  D
Sbjct:     3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPAD 61

Query:   234 AA-AAKDACTGMEIDGRQIRVD 254
             A   A+D   G  +DG+ I+V+
Sbjct:    62 AKDVARDM-NGKSLDGKAIKVE 82


>WB|WBGene00004700 [details] [associations]
            symbol:rsp-3 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            [GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
            development" evidence=IMP] [GO:0009790 "embryo development"
            evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
            evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
            evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
            "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
            development" evidence=IMP] [GO:0006376 "mRNA splice site selection"
            evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0006898
            GO:GO:0040007 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0040011 GO:GO:0003723 GO:GO:0040035 eggNOG:COG0724
            GO:GO:0006376 GO:GO:0001703 GeneTree:ENSGT00700000104103
            HOGENOM:HOG000276234 EMBL:AF242767 EMBL:AL132904 RefSeq:NP_499649.2
            ProteinModelPortal:Q9NEW6 SMR:Q9NEW6 STRING:Q9NEW6 PaxDb:Q9NEW6
            PRIDE:Q9NEW6 EnsemblMetazoa:Y111B2A.18.1
            EnsemblMetazoa:Y111B2A.18.2 EnsemblMetazoa:Y111B2A.18.3
            GeneID:176688 KEGG:cel:CELE_Y111B2A.18 UCSC:Y111B2A.18.1 CTD:176688
            WormBase:Y111B2A.18 InParanoid:Q9NEW6 KO:K12890 OMA:MPRGGSE
            NextBio:893608 Uniprot:Q9NEW6
        Length = 258

 Score = 130 (50.8 bits), Expect = 4.5e-06, P = 4.5e-06
 Identities = 36/81 (44%), Positives = 45/81 (55%)

Query:   193 EQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIR 252
             E+++  IF KYG   R++ V D K+GR   F FV FE   DA  A  A  G E DGR+IR
Sbjct:    22 EKEVEDIFHKYG---RIKYV-DIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIR 77

Query:   253 VDFSVTQRAHTPTPGIYMGRP 273
             V+F  T+      PG   GRP
Sbjct:    78 VEF--TRGVGPRGPG---GRP 93


>UNIPROTKB|Q9NEW6 [details] [associations]
            symbol:rsp-3 "Probable splicing factor,
            arginine/serine-rich 3" species:6239 "Caenorhabditis elegans"
            [GO:0009792 "embryo development ending in birth or egg hatching"
            evidence=IGI;IMP] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0008380 "RNA splicing" evidence=NAS] [GO:0003723 "RNA binding"
            evidence=NAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
            GO:GO:0006898 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0003723 GO:GO:0040035
            eggNOG:COG0724 GO:GO:0006376 GO:GO:0001703
            GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 EMBL:AF242767
            EMBL:AL132904 RefSeq:NP_499649.2 ProteinModelPortal:Q9NEW6
            SMR:Q9NEW6 STRING:Q9NEW6 PaxDb:Q9NEW6 PRIDE:Q9NEW6
            EnsemblMetazoa:Y111B2A.18.1 EnsemblMetazoa:Y111B2A.18.2
            EnsemblMetazoa:Y111B2A.18.3 GeneID:176688 KEGG:cel:CELE_Y111B2A.18
            UCSC:Y111B2A.18.1 CTD:176688 WormBase:Y111B2A.18 InParanoid:Q9NEW6
            KO:K12890 OMA:MPRGGSE NextBio:893608 Uniprot:Q9NEW6
        Length = 258

 Score = 130 (50.8 bits), Expect = 4.5e-06, P = 4.5e-06
 Identities = 36/81 (44%), Positives = 45/81 (55%)

Query:   193 EQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIR 252
             E+++  IF KYG   R++ V D K+GR   F FV FE   DA  A  A  G E DGR+IR
Sbjct:    22 EKEVEDIFHKYG---RIKYV-DIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIR 77

Query:   253 VDFSVTQRAHTPTPGIYMGRP 273
             V+F  T+      PG   GRP
Sbjct:    78 VEF--TRGVGPRGPG---GRP 93


>UNIPROTKB|I3LGX0 [details] [associations]
            symbol:PPIL4 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0006457 "protein folding" evidence=IEA] [GO:0003755
            "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002130 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160
            PRINTS:PR00153 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
            GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
            GeneTree:ENSGT00670000097658 OMA:ERDGHYG EMBL:CU459105
            EMBL:CU915504 EMBL:AEMK01192340 Ensembl:ENSSSCT00000024741
            Uniprot:I3LGX0
        Length = 471

 Score = 135 (52.6 bits), Expect = 4.6e-06, P = 4.6e-06
 Identities = 30/79 (37%), Positives = 43/79 (54%)

Query:   178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAA 237
             P   L V  L+  T ++ +  IFS++GP+   EV+ D KTG S  + F+ FE  +D   A
Sbjct:   215 PENVLFVCKLNSVTPDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKA 274

Query:   238 KDACTGMEIDGRQIRVDFS 256
                   + ID R+I VDFS
Sbjct:   275 FFKMDNVLIDDRRIHVDFS 293


>UNIPROTKB|Q3ZCE8 [details] [associations]
            symbol:RBM8A "RNA-binding protein 8A" species:9913 "Bos
            taurus" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
            spliceosome" evidence=IEA] [GO:0035145 "exon-exon junction complex"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IEA] [GO:0051028 "mRNA
            transport" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0006417 "regulation of translation" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR008111 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
            GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0051028 GO:GO:0071013 eggNOG:COG0724
            GO:GO:0035145 GeneTree:ENSGT00550000074641 HSSP:P52298
            EMBL:BT025376 EMBL:BC102484 IPI:IPI00705285 IPI:IPI00939094
            RefSeq:NP_001030401.1 UniGene:Bt.49450 ProteinModelPortal:Q3ZCE8
            SMR:Q3ZCE8 STRING:Q3ZCE8 PRIDE:Q3ZCE8 Ensembl:ENSBTAT00000011016
            GeneID:518045 KEGG:bta:518045 CTD:9939 HOGENOM:HOG000183826
            HOVERGEN:HBG055173 InParanoid:Q3ZCE8 KO:K12876 OMA:WILFVTS
            OrthoDB:EOG42822W NextBio:20872569 Uniprot:Q3ZCE8
        Length = 174

 Score = 121 (47.7 bits), Expect = 4.9e-06, P = 4.9e-06
 Identities = 29/90 (32%), Positives = 50/90 (55%)

Query:   171 DGRENPQPSRC-----LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCF 225
             DG E P P R      L V G+    TE+ I+  F++YG ++ + + +D +TG  +G+  
Sbjct:    60 DGDE-PGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTL 118

Query:   226 VYFESRDDAAAAKDACTGMEIDGRQIRVDF 255
             V +E+  +A AA +   G ++ G+ I VD+
Sbjct:   119 VEYETYKEAQAAMEGLNGQDLMGQPISVDW 148


>UNIPROTKB|F6XAE9 [details] [associations]
            symbol:RBM8A "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR008111 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
            GeneTree:ENSGT00550000074641 CTD:9939 KO:K12876 OMA:WILFVTS
            Ensembl:ENSCAFT00000017835 EMBL:AAEX03011037 RefSeq:XP_533035.1
            ProteinModelPortal:F6XAE9 GeneID:475827 KEGG:cfa:475827
            Uniprot:F6XAE9
        Length = 174

 Score = 121 (47.7 bits), Expect = 4.9e-06, P = 4.9e-06
 Identities = 29/90 (32%), Positives = 50/90 (55%)

Query:   171 DGRENPQPSRC-----LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCF 225
             DG E P P R      L V G+    TE+ I+  F++YG ++ + + +D +TG  +G+  
Sbjct:    60 DGDE-PGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTL 118

Query:   226 VYFESRDDAAAAKDACTGMEIDGRQIRVDF 255
             V +E+  +A AA +   G ++ G+ I VD+
Sbjct:   119 VEYETYKEAQAAMEGLNGQDLMGQPISVDW 148


>UNIPROTKB|Q9Y5S9 [details] [associations]
            symbol:RBM8A "RNA-binding protein 8A" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006417
            "regulation of translation" evidence=IEA] [GO:0016607 "nuclear
            speck" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA;NAS]
            [GO:0005737 "cytoplasm" evidence=NAS] [GO:0003729 "mRNA binding"
            evidence=NAS] [GO:0003723 "RNA binding" evidence=NAS] [GO:0005515
            "protein binding" evidence=IPI] [GO:0035145 "exon-exon junction
            complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC;TAS] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IMP;TAS] [GO:0005654
            "nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=TAS] [GO:0006369 "termination of RNA polymerase II
            transcription" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
            evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
            "gene expression" evidence=TAS] [GO:0016070 "RNA metabolic process"
            evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
            [GO:0031124 "mRNA 3'-end processing" evidence=TAS] [GO:0005730
            "nucleolus" evidence=IDA] Reactome:REACT_71 Reactome:REACT_21257
            InterPro:IPR000504 InterPro:IPR008111 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005829 GO:GO:0005654 GO:GO:0006417 GO:GO:0000184
            GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 GO:GO:0003729
            Gene3D:3.30.70.330 TCDB:3.A.18.1.1 GO:GO:0006406 EMBL:AL160282
            GO:GO:0000398 GO:GO:0071013 Reactome:REACT_1788 eggNOG:COG0724
            GO:GO:0035145 PDB:2HYI PDB:2J0Q PDB:2J0S PDB:2XB2 PDB:3EX7
            PDBsum:2HYI PDBsum:2J0Q PDBsum:2J0S PDBsum:2XB2 PDBsum:3EX7
            GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78 EMBL:CH471244
            PDB:1P27 PDBsum:1P27 CTD:9939 HOGENOM:HOG000183826
            HOVERGEN:HBG055173 KO:K12876 OMA:WILFVTS OrthoDB:EOG42822W
            EMBL:AF127761 EMBL:AF198620 EMBL:AF231511 EMBL:AF231512
            EMBL:AF299118 EMBL:AF403012 EMBL:AF182415 EMBL:AF161463
            EMBL:CR541823 EMBL:CR541805 EMBL:AK075009 EMBL:BC017088
            IPI:IPI00001757 IPI:IPI00216659 RefSeq:NP_005096.1
            RefSeq:XP_003960226.1 UniGene:Hs.591455 ProteinModelPortal:Q9Y5S9
            SMR:Q9Y5S9 DIP:DIP-33070N IntAct:Q9Y5S9 MINT:MINT-265248
            STRING:Q9Y5S9 PhosphoSite:Q9Y5S9 DMDM:10720244 PaxDb:Q9Y5S9
            PRIDE:Q9Y5S9 DNASU:9939 Ensembl:ENST00000330165
            Ensembl:ENST00000369307 Ensembl:ENST00000578414
            Ensembl:ENST00000583313 GeneID:101060541 GeneID:9939
            KEGG:hsa:101060541 KEGG:hsa:9939 UCSC:uc001ent.2 UCSC:uc001enu.2
            GeneCards:GC01P145507 HGNC:HGNC:9905 HPA:CAB012803 HPA:HPA018403
            MIM:605313 neXtProt:NX_Q9Y5S9 Orphanet:3320 PharmGKB:PA34270
            InParanoid:Q9Y5S9 PhylomeDB:Q9Y5S9 ChiTaRS:RBM8A
            EvolutionaryTrace:Q9Y5S9 GenomeRNAi:9939 NextBio:37498
            PMAP-CutDB:Q9Y5S9 Bgee:Q9Y5S9 CleanEx:HS_RBM8A
            Genevestigator:Q9Y5S9 GermOnline:ENSG00000131795 Uniprot:Q9Y5S9
        Length = 174

 Score = 121 (47.7 bits), Expect = 4.9e-06, P = 4.9e-06
 Identities = 29/90 (32%), Positives = 50/90 (55%)

Query:   171 DGRENPQPSRC-----LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCF 225
             DG E P P R      L V G+    TE+ I+  F++YG ++ + + +D +TG  +G+  
Sbjct:    60 DGDE-PGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTL 118

Query:   226 VYFESRDDAAAAKDACTGMEIDGRQIRVDF 255
             V +E+  +A AA +   G ++ G+ I VD+
Sbjct:   119 VEYETYKEAQAAMEGLNGQDLMGQPISVDW 148


>RGD|1310099 [details] [associations]
            symbol:Rbm8a "RNA binding motif protein 8A" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0000184 "nuclear-transcribed mRNA catabolic process,
            nonsense-mediated decay" evidence=IEA;ISO] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO]
            [GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0006417 "regulation of translation" evidence=IEA] [GO:0008380
            "RNA splicing" evidence=IEA] [GO:0016607 "nuclear speck"
            evidence=IEA] [GO:0035145 "exon-exon junction complex"
            evidence=IEA;ISO] [GO:0051028 "mRNA transport" evidence=IEA]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
            [GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
            InterPro:IPR008111 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738
            PROSITE:PS50102 SMART:SM00360 RGD:1310099 GO:GO:0005737
            GO:GO:0006417 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
            GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            GO:GO:0051028 GO:GO:0071013 eggNOG:COG0724 GO:GO:0035145
            GeneTree:ENSGT00550000074641 CTD:9939 HOGENOM:HOG000183826
            KO:K12876 OMA:WILFVTS OrthoDB:EOG42822W EMBL:DQ359102
            IPI:IPI00210002 RefSeq:NP_001258067.1 RefSeq:XP_001059872.1
            UniGene:Rn.37716 ProteinModelPortal:Q27W01 SMR:Q27W01 STRING:Q27W01
            PhosphoSite:Q27W01 PRIDE:Q27W01 Ensembl:ENSRNOT00000028807
            GeneID:295284 KEGG:rno:295284 UCSC:RGD:1310099 InParanoid:Q27W01
            NextBio:639304 Genevestigator:Q27W01 Uniprot:Q27W01
        Length = 174

 Score = 121 (47.7 bits), Expect = 4.9e-06, P = 4.9e-06
 Identities = 29/90 (32%), Positives = 50/90 (55%)

Query:   171 DGRENPQPSRC-----LGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCF 225
             DG E P P R      L V G+    TE+ I+  F++YG ++ + + +D +TG  +G+  
Sbjct:    60 DGDE-PGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTL 118

Query:   226 VYFESRDDAAAAKDACTGMEIDGRQIRVDF 255
             V +E+  +A AA +   G ++ G+ I VD+
Sbjct:   119 VEYETYKEAQAAMEGLNGQDLMGQPISVDW 148


>UNIPROTKB|F1NH81 [details] [associations]
            symbol:PABPC1 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
            EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
            Uniprot:F1NH81
        Length = 573

 Score = 129 (50.5 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
 Identities = 25/61 (40%), Positives = 41/61 (67%)

Query:   193 EQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQIR 252
             ++++  +F K+GP   V+V+ D ++G+S+GF FV FE  +DA  A D   G E++G+QI 
Sbjct:   140 DERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 198

Query:   253 V 253
             V
Sbjct:   199 V 199

 Score = 49 (22.3 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
 Identities = 17/53 (32%), Positives = 26/53 (49%)

Query:   276 EQLNNTQSELGSLLSEKHAIKGGKFEEVFGEIXXXX-XXXXXXMTEMSGNGRI 327
             E+L    S  G++ S K  ++GG+  + FG +           +TEM  NGRI
Sbjct:   244 ERLRKEFSPFGTITSAKVMMEGGR-SKGFGFVCFSSPEEATKAVTEM--NGRI 293


>MGI|MGI:1923417 [details] [associations]
            symbol:Snrnp35 "small nuclear ribonucleoprotein 35
            (U11/U12)" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003674 "molecular_function"
            evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=IEA]
            [GO:0005689 "U12-type spliceosomal complex" evidence=ISO]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0008150
            "biological_process" evidence=ND] [GO:0008380 "RNA splicing"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 MGI:MGI:1923417 GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            eggNOG:COG0724 GO:GO:0005689 HSSP:Q14103
            GeneTree:ENSGT00530000063750 CTD:11066 HOGENOM:HOG000006374
            HOVERGEN:HBG104583 KO:K13155 OMA:QHEVFVD OrthoDB:EOG4MSD0C
            ChiTaRS:SNRNP35 EMBL:AK018232 EMBL:AK039064 EMBL:BC043031
            EMBL:BC058361 IPI:IPI00135531 RefSeq:NP_083808.1 UniGene:Mm.156035
            ProteinModelPortal:Q9D384 SMR:Q9D384 STRING:Q9D384
            PhosphoSite:Q9D384 PRIDE:Q9D384 Ensembl:ENSMUST00000031349
            Ensembl:ENSMUST00000111453 GeneID:76167 KEGG:mmu:76167
            UCSC:uc008zpy.1 InParanoid:Q9D384 NextBio:344705 Bgee:Q9D384
            Genevestigator:Q9D384 Uniprot:Q9D384
        Length = 244

 Score = 129 (50.5 bits), Expect = 5.0e-06, P = 5.0e-06
 Identities = 33/90 (36%), Positives = 51/90 (56%)

Query:   178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFV-YFESRDDAAA 236
             P   L V  L++ T E+++  +FS+YG + R+ +V D  TG S+G+ F+ Y E R    A
Sbjct:    49 PLLTLFVARLNLQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERALMKA 108

Query:   237 AKDACTGMEIDGRQIRVDFSV--TQRAHTP 264
              +DA  G+ ID  +I VD+ +  T R   P
Sbjct:   109 YRDA-DGLVIDQHEIFVDYELERTLRGWIP 137


>UNIPROTKB|F1NJ85 [details] [associations]
            symbol:SNRNP35 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005689
            "U12-type spliceosomal complex" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
            GeneTree:ENSGT00530000063750 OMA:QHEVFVD EMBL:AADN02034882
            IPI:IPI00586472 ProteinModelPortal:F1NJ85
            Ensembl:ENSGALT00000005257 Uniprot:F1NJ85
        Length = 245

 Score = 129 (50.5 bits), Expect = 5.1e-06, P = 5.1e-06
 Identities = 29/81 (35%), Positives = 48/81 (59%)

Query:   178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFV-YFESRDDAAA 236
             P   L V  L++ TTE+++  +FS+YG + ++ +V D  TG S+G+ F+ Y E R    A
Sbjct:    54 PHLTLFVARLNLQTTEEKLKEVFSRYGDIRKIRLVRDLVTGFSKGYAFIEYKEERALLKA 113

Query:   237 AKDACTGMEIDGRQIRVDFSV 257
              +DA   + ID  ++ VDF +
Sbjct:   114 HRDA-NRLVIDQHEVFVDFEL 133


>UNIPROTKB|J9NX69 [details] [associations]
            symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
            Pfam:PF14327 GeneTree:ENSGT00550000074641 EMBL:AAEX03026714
            Ensembl:ENSCAFT00000049845 Uniprot:J9NX69
        Length = 509

 Score = 135 (52.6 bits), Expect = 5.2e-06, P = 5.2e-06
 Identities = 29/97 (29%), Positives = 50/97 (51%)

Query:   180 RCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKD 239
             R + V  +    TE+Q+  IFS+ GPV    +V D +TG+ +G+ F  ++ ++ A +A  
Sbjct:    16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75

Query:   240 ACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTYE 276
                G E  GR +RVD + +++       +  G P  E
Sbjct:    76 NLNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIE 112


>FB|FBgn0028382 [details] [associations]
            symbol:cyp33 "cyclophilin-33" species:7227 "Drosophila
            melanogaster" [GO:0003755 "peptidyl-prolyl cis-trans isomerase
            activity" evidence=IEA;NAS] [GO:0003729 "mRNA binding"
            evidence=ISS;NAS] [GO:0006457 "protein folding" evidence=IEA;NAS]
            [GO:0005634 "nucleus" evidence=NAS] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0006911 "phagocytosis, engulfment" evidence=IMP] [GO:0071013
            "catalytic step 2 spliceosome" evidence=IDA] [GO:0071011
            "precatalytic spliceosome" evidence=IDA] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=IC] InterPro:IPR000504
            InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR016304
            InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475
            PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102
            SMART:SM00360 EMBL:AE013599 GO:GO:0006457 GO:GO:0006911
            GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
            GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 GO:GO:0003755
            SUPFAM:SSF50891 GO:GO:0000413 GeneTree:ENSGT00690000101651
            KO:K09564 EMBL:AF182826 EMBL:AY061421 RefSeq:NP_523773.1
            UniGene:Dm.2854 ProteinModelPortal:Q9V3G3 SMR:Q9V3G3 DIP:DIP-21959N
            IntAct:Q9V3G3 MINT:MINT-1643160 STRING:Q9V3G3 PaxDb:Q9V3G3
            PRIDE:Q9V3G3 EnsemblMetazoa:FBtr0086945 GeneID:36984
            KEGG:dme:Dmel_CG4886 UCSC:CG4886-RA CTD:36984 FlyBase:FBgn0028382
            InParanoid:Q9V3G3 OMA:AFIEFEL OrthoDB:EOG4QV9TN PhylomeDB:Q9V3G3
            GenomeRNAi:36984 NextBio:801358 Bgee:Q9V3G3 GermOnline:CG4886
            Uniprot:Q9V3G3
        Length = 300

 Score = 131 (51.2 bits), Expect = 5.3e-06, P = 5.3e-06
 Identities = 28/77 (36%), Positives = 46/77 (59%)

Query:   180 RCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKD 239
             R + V GL+   TE+ +N+ F  +G +  +++  D ++ R RGF F+ +E  +DAAAA D
Sbjct:     6 RTIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAID 65

Query:   240 ACTGMEIDGRQIRVDFS 256
                  E+ GR IRV+ +
Sbjct:    66 NMNDSELCGRTIRVNLA 82


>UNIPROTKB|F1S1L9 [details] [associations]
            symbol:LOC100515986 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14407
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            EMBL:CU861981 Ensembl:ENSSSCT00000013653 KEGG:ssc:100515986
            Uniprot:F1S1L9
        Length = 551

 Score = 135 (52.6 bits), Expect = 5.8e-06, P = 5.8e-06
 Identities = 29/97 (29%), Positives = 50/97 (51%)

Query:   180 RCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKD 239
             R + V  +    TE+Q+  IFS+ GPV    +V D +TG+ +G+ F  ++ ++ A +A  
Sbjct:    16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75

Query:   240 ACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTYE 276
                G E  GR +RVD + +++       +  G P  E
Sbjct:    76 NLNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIE 112


>UNIPROTKB|K7GQE7 [details] [associations]
            symbol:LOC100515986 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
            Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
            EMBL:CU861981 Ensembl:ENSSSCT00000033718 Uniprot:K7GQE7
        Length = 555

 Score = 135 (52.6 bits), Expect = 5.9e-06, P = 5.9e-06
 Identities = 29/97 (29%), Positives = 50/97 (51%)

Query:   180 RCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKD 239
             R + V  +    TE+Q+  IFS+ GPV    +V D +TG+ +G+ F  ++ ++ A +A  
Sbjct:    16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75

Query:   240 ACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTYE 276
                G E  GR +RVD + +++       +  G P  E
Sbjct:    76 NLNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIE 112


>UNIPROTKB|Q5ZLS0 [details] [associations]
            symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            CTD:1478 HOVERGEN:HBG051145 KO:K14407 InterPro:IPR025742
            InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            GeneTree:ENSGT00550000074641 HOGENOM:HOG000214372 EMBL:AADN02013338
            EMBL:AJ719664 IPI:IPI00603977 RefSeq:NP_001006433.1
            UniGene:Gga.7714 SMR:Q5ZLS0 STRING:Q5ZLS0
            Ensembl:ENSGALT00000010924 GeneID:422258 KEGG:gga:422258
            NextBio:20824917 Uniprot:Q5ZLS0
        Length = 475

 Score = 134 (52.2 bits), Expect = 6.0e-06, P = 6.0e-06
 Identities = 29/97 (29%), Positives = 50/97 (51%)

Query:   180 RCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKD 239
             R + V  +    TE+Q+  IFS+ GPV    +V D +TG+ +G+ F  ++ ++ A +A  
Sbjct:    16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75

Query:   240 ACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTYE 276
                G E  GR +RVD + +++       +  G P  E
Sbjct:    76 NLNGREFSGRALRVDNAASEKNKEELKSLGTGAPIIE 112


>UNIPROTKB|Q8HXM1 [details] [associations]
            symbol:CSTF2 "Cleavage stimulation factor subunit 2"
            species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=ISS]
            [GO:0005847 "mRNA cleavage and polyadenylation specificity factor
            complex" evidence=ISS] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
            GO:GO:0005847 EMBL:AY130297 IPI:IPI00694260 RefSeq:NP_777110.1
            UniGene:Bt.3723 UniGene:Bt.78724 ProteinModelPortal:Q8HXM1
            SMR:Q8HXM1 STRING:Q8HXM1 PRIDE:Q8HXM1 GeneID:282588 KEGG:bta:282588
            CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
            NextBio:20806300 ArrayExpress:Q8HXM1 GO:GO:0071920
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            Uniprot:Q8HXM1
        Length = 572

 Score = 135 (52.6 bits), Expect = 6.2e-06, P = 6.2e-06
 Identities = 29/97 (29%), Positives = 50/97 (51%)

Query:   180 RCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKD 239
             R + V  +    TE+Q+  IFS+ GPV    +V D +TG+ +G+ F  ++ ++ A +A  
Sbjct:    16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75

Query:   240 ACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTYE 276
                G E  GR +RVD + +++       +  G P  E
Sbjct:    76 NLNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIE 112


>UNIPROTKB|K7GS58 [details] [associations]
            symbol:LOC100515986 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
            Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
            EMBL:CU861981 GeneID:100515986 RefSeq:XP_003135279.1
            Ensembl:ENSSSCT00000034722 Uniprot:K7GS58
        Length = 572

 Score = 135 (52.6 bits), Expect = 6.2e-06, P = 6.2e-06
 Identities = 29/97 (29%), Positives = 50/97 (51%)

Query:   180 RCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKD 239
             R + V  +    TE+Q+  IFS+ GPV    +V D +TG+ +G+ F  ++ ++ A +A  
Sbjct:    16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75

Query:   240 ACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTYE 276
                G E  GR +RVD + +++       +  G P  E
Sbjct:    76 NLNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIE 112


>TAIR|locus:2080772 [details] [associations]
            symbol:EIF3G1 "eukaryotic translation initiation factor
            3G1" species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
            "translation initiation factor activity" evidence=ISS;TAS]
            [GO:0005737 "cytoplasm" evidence=ISM] [GO:0006413 "translational
            initiation" evidence=TAS] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0005852 "eukaryotic translation initiation factor
            3 complex" evidence=IDA] [GO:0005886 "plasma membrane"
            evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=RCA] [GO:0006511 "ubiquitin-dependent protein catabolic
            process" evidence=RCA] [GO:0006606 "protein import into nucleus"
            evidence=RCA] [GO:0009853 "photorespiration" evidence=RCA]
            [GO:0051788 "response to misfolded protein" evidence=RCA]
            [GO:0080129 "proteasome core complex assembly" evidence=RCA]
            InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
            InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
            SMART:SM00343 SMART:SM00360 GO:GO:0005886 EMBL:CP002686
            GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003743
            GO:GO:0005852 KO:K03248 OMA:SNLSEAM InterPro:IPR024675
            PANTHER:PTHR10352 Pfam:PF12353 IPI:IPI00938678
            RefSeq:NP_001154607.1 UniGene:At.25153 ProteinModelPortal:F4J6A1
            SMR:F4J6A1 PRIDE:F4J6A1 EnsemblPlants:AT3G11400.2 GeneID:820313
            KEGG:ath:AT3G11400 Uniprot:F4J6A1
        Length = 321

 Score = 131 (51.2 bits), Expect = 6.2e-06, P = 6.2e-06
 Identities = 35/84 (41%), Positives = 46/84 (54%)

Query:   173 RENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRD 232
             R N + S  + V  LS  T E  +  +F  +G V RV V ID KTG SRGF FV F SR+
Sbjct:   235 RRNDENS--VRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSRE 292

Query:   233 DAAAAKDACTGMEIDGRQIRVDFS 256
             DA  A +   G   D   +RV+++
Sbjct:   293 DAQRAINKLNGYGYDNLILRVEWA 316

WARNING:  HSPs involving 387 database sequences were not reported due to the
          limiting value of parameter B = 250.


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.135   0.412    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      403       328   0.00088  116 3  11 22  0.42    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  637
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  229 KB (2126 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  25.74u 0.10s 25.84t   Elapsed:  00:00:01
  Total cpu time:  25.75u 0.10s 25.85t   Elapsed:  00:00:01
  Start:  Thu Aug 15 17:08:02 2013   End:  Thu Aug 15 17:08:03 2013
WARNINGS ISSUED:  2
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with TRA2B TRA2B TRA2B Transformer-2 protein homolog beta	protein from Bos taurus	2.2e-40
BLAST match view associations BLAST with TRA2B TRA2B TRA2B Uncharacterized protein	protein from Canis lupus familiaris	2.2e-40
BLAST match view associations BLAST with TRA2B TRA2B TRA2B Transformer-2 protein homolog beta	protein from Homo sapiens	2.2e-40
BLAST match view associations BLAST with Tra2b Tra2b Tra2b transformer 2 beta homolog (Drosophila)	protein from Mus musculus	2.2e-40
BLAST match view associations BLAST with Tra2b Tra2b Tra2b transformer 2 beta homolog (Drosophila)	gene from Rattus norvegicus	2.2e-40
BLAST match view associations BLAST with TRA2B TRA2B TRA2B Uncharacterized protein	protein from Sus scrofa	2.8e-40
BLAST match view associations BLAST with TRA2B TRA2B TRA2B Transformer-2 beta	protein from Gallus gallus	1.2e-39
BLAST match view associations BLAST with tra2 tra2 tra2 transformer 2	protein from Drosophila melanogaster	4.0e-39
BLAST match view associations BLAST with Tra2a Tra2a Tra2a transformer 2 alpha homolog (Drosophila)	protein from Mus musculus	1.1e-38
BLAST match view associations BLAST with Tra2a Tra2a Tra2a transformer 2 alpha homolog (Drosophila)	gene from Rattus norvegicus	1.1e-38
BLAST match view associations BLAST with TRA2A TRA2A TRA2A Transformer 2 alpha homolog (Drosophila)	protein from Bos taurus	1.1e-38
BLAST match view associations BLAST with TRA2A TRA2A TRA2A Uncharacterized protein	protein from Canis lupus familiaris	1.1e-38
BLAST match view associations BLAST with TRA2A TRA2A TRA2A Transformer-2 protein homolog alpha	protein from Homo sapiens	1.1e-38
BLAST match view associations BLAST with TRA2A TRA2A TRA2A	protein from Sus scrofa	1.1e-38
BLAST match view associations BLAST with TRA2A TRA2A TRA2A Uncharacterized protein	protein from Gallus gallus	1.3e-38
BLAST match view associations BLAST with tra2a tra2a tra2a transformer-2 alpha	gene_product from Danio rerio	9.3e-38
BLAST match view associations BLAST with tra2b tra2b tra2b transformer 2 beta homolog (Drosophila)	gene_product from Danio rerio	5.1e-37
BLAST match view associations BLAST with TRA2A TRA2A TRA2A cDNA FLJ50614, highly similar to Transformer-2 protein homolog	protein from Homo sapiens	3.1e-35
BLAST match view associations BLAST with TRA2A TRA2A TRA2A Transformer-2 protein homolog alpha	protein from Homo sapiens	3.1e-35
BLAST match view associations BLAST with F1LVK5 F1LVK5 F1LVK5 Uncharacterized protein	protein from Rattus norvegicus	8.8e-32
BLAST match view associations BLAST with rsp-8 rsp-8 rsp-8	gene from Caenorhabditis elegans	3.5e-27
BLAST match view associations BLAST with tra2 tra2 tra2 putative transformer-2 protein	gene from Dictyostelium discoideum	3.1e-26
BLAST match view associations BLAST with TRA2B TRA2B TRA2B Transformer-2 protein homolog beta	protein from Homo sapiens	2.1e-22
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold inducible RNA binding protein	protein from Bos taurus	5.5e-14
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Canis lupus familiaris	5.5e-14
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Canis lupus familiaris	5.5e-14
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	5.5e-14
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	5.5e-14
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	5.5e-14
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	5.5e-14
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	5.5e-14
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	5.5e-14
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	5.5e-14
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Sus scrofa	5.5e-14
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Pongo abelii	5.5e-14
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Cricetulus griseus	7.1e-14
BLAST match view associations BLAST with Cirbp Cirbp Cirbp cold inducible RNA binding protein	protein from Mus musculus	7.1e-14
BLAST match view associations BLAST with Cirbp Cirbp Cirbp cold inducible RNA binding protein	gene from Rattus norvegicus	7.1e-14
BLAST match view associations BLAST with cirbp cirbp cirbp cold inducible RNA binding protein	gene_product from Danio rerio	7.1e-14
BLAST match view associations BLAST with cirbp cirbp cirbp Cold-inducible RNA-binding protein	protein from Xenopus (Silurana) tropicalis	3.4e-13
BLAST match view associations BLAST with cirbp-b cirbp-b cirbp-b Cold-inducible RNA-binding protein B	protein from Xenopus laevis	3.4e-13
BLAST match view associations BLAST with CIRBP CIRBP CIRBP cDNA FLJ52850, moderately similar to Cold-inducible RNA-binding protein	protein from Homo sapiens	7.1e-13
BLAST match view associations BLAST with cirbp cirbp cirbp Cold-inducible RNA-binding protein	protein from Rana catesbeiana	1.2e-12
BLAST match view associations BLAST with zgc:112425 zgc:112425 zgc:112425	gene_product from Danio rerio	1.6e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold inducible RNA binding protein, isoform CRA_c	protein from Homo sapiens	2.6e-12
BLAST match view associations BLAST with cirbp-a cirbp-a cirbp-a Cold-inducible RNA-binding protein A	protein from Xenopus laevis	7.5e-12
BLAST match view associations BLAST with E2R228 E2R228 E2R228 Uncharacterized protein	protein from Canis lupus familiaris	1.3e-11
BLAST match view associations BLAST with Rbm3 Rbm3 Rbm3 RNA binding motif protein 3	protein from Mus musculus	3.5e-11
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Putative RNA-binding protein 3	protein from Homo sapiens	4.5e-11
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Sus scrofa	7.6e-11
BLAST match view associations BLAST with AT3G08000 AT3G08000 AT3G08000	protein from Arabidopsis thaliana	1.3e-10
BLAST match view associations BLAST with F6RBQ9 F6RBQ9 F6RBQ9 Uncharacterized protein	protein from Bos taurus	2.1e-10
BLAST match view associations BLAST with Rbm3 Rbm3 Rbm3 RNA binding motif (RNP1, RRM) protein 3	gene from Rattus norvegicus	2.1e-10
BLAST match view associations BLAST with RAB33A RAB33A RAB33A Uncharacterized protein	protein from Gallus gallus	3.5e-10
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Canis lupus familiaris	3.5e-10
BLAST match view associations BLAST with blt801 blt801 blt801 Glycine-rich RNA-binding protein blt801	protein from Hordeum vulgare	3.5e-10
BLAST match view associations BLAST with GRP4 GRP4 GRP4 AT3G23830	protein from Arabidopsis thaliana	3.5e-10
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	7.5e-10
BLAST match view associations BLAST with AT3G46020 AT3G46020 AT3G46020	protein from Arabidopsis thaliana	7.5e-10
BLAST match view associations BLAST with AT5G06210 AT5G06210 AT5G06210	protein from Arabidopsis thaliana	1.2e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	3.4e-09
BLAST match view associations BLAST with I3LQ36 I3LQ36 I3LQ36 Uncharacterized protein	protein from Sus scrofa	3.4e-09
BLAST match view associations BLAST with ncbp2 ncbp2 ncbp2 Nuclear cap-binding protein subunit 2	protein from Esox lucius	3.4e-09
BLAST match view associations BLAST with ncbp2 ncbp2 ncbp2 Nuclear cap-binding protein subunit 2	protein from Xenopus laevis	3.4e-09
BLAST match view associations BLAST with CBU_1183 CBU_1183 CBU_1183 Glycine-rich RNA-binding protein	protein from Coxiella burnetii RSA 493	4.5e-09
BLAST match view associations BLAST with CBU_1183 CBU_1183 CBU_1183 nucleic acid binding domain protein	protein from Coxiella burnetii RSA 493	4.5e-09
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Sus scrofa	5.7e-09
BLAST match view associations BLAST with NCBP2 NCBP2 NCBP2 Nuclear cap-binding protein subunit 2	protein from Taeniopygia guttata	5.7e-09
BLAST match view associations BLAST with ncbp2 ncbp2 ncbp2 Nuclear cap-binding protein subunit 2	protein from Salmo salar	5.7e-09
BLAST match view associations BLAST with ncbp2 ncbp2 ncbp2 Nuclear cap-binding protein subunit 2	protein from Xenopus (Silurana) tropicalis	5.7e-09
BLAST match view associations BLAST with ncbp2 ncbp2 ncbp2 nuclear cap binding protein subunit 2	gene_product from Danio rerio	5.7e-09
BLAST match view associations BLAST with NCBP2 NCBP2 NCBP2 Nuclear cap-binding protein subunit 2	protein from Gallus gallus	7.4e-09
BLAST match view associations BLAST with CG11266 CG11266 CG11266	protein from Drosophila melanogaster	8.4e-09
BLAST match view associations BLAST with NCBP2 NCBP2 NCBP2 Nuclear cap-binding protein subunit 2	protein from Bos taurus	9.5e-09
BLAST match view associations BLAST with NCBP2 NCBP2 NCBP2 Uncharacterized protein	protein from Canis lupus familiaris	9.5e-09
BLAST match view associations BLAST with NCBP2 NCBP2 NCBP2 Nuclear cap-binding protein subunit 2	protein from Homo sapiens	9.5e-09
BLAST match view associations BLAST with NCBP2 NCBP2 NCBP2 Uncharacterized protein	protein from Sus scrofa	9.5e-09
BLAST match view associations BLAST with ncbp2 ncbp2 ncbp2 Nuclear cap-binding protein subunit 2	protein from Siniperca chuatsi	9.5e-09
BLAST match view associations BLAST with Ncbp2 Ncbp2 Ncbp2 nuclear cap binding protein subunit 2	protein from Mus musculus	9.5e-09
BLAST match view associations BLAST with Ncbp2 Ncbp2 Ncbp2 nuclear cap binding protein subunit 2	gene from Rattus norvegicus	9.5e-09
BLAST match view associations BLAST with GR-RBP5 GR-RBP5 GR-RBP5 AT1G74230	protein from Arabidopsis thaliana	1.0e-08
BLAST match view associations BLAST with NCL NCL NCL Nucleolin	protein from Homo sapiens	1.1e-08
BLAST match view associations BLAST with R09B3.2 R09B3.2 R09B3.2	gene from Caenorhabditis elegans	1.2e-08
BLAST match view associations BLAST with DDB_G0292698 DDB_G0292698 DDB_G0292698 RNA-binding region RNP-1 domain-containing protein	gene from Dictyostelium discoideum	1.3e-08
BLAST match view associations BLAST with CG10466 CG10466 CG10466	protein from Drosophila melanogaster	1.6e-08
BLAST match view associations BLAST with Rbmx2 Rbmx2 Rbmx2 RNA-binding motif protein, X-linked 2	protein from Rattus norvegicus	1.9e-08
BLAST match view associations BLAST with Rbmx2 Rbmx2 Rbmx2 RNA binding motif protein, X-linked 2	gene from Rattus norvegicus	2.0e-08
BLAST match view associations BLAST with LOC100737174 LOC100737174 LOC100737174 Uncharacterized protein	protein from Sus scrofa	2.0e-08
BLAST match view associations BLAST with GR-RBP2 GR-RBP2 GR-RBP2 AT4G13850	protein from Arabidopsis thaliana	2.0e-08
BLAST match view associations BLAST with Rbmx2 Rbmx2 Rbmx2 RNA binding motif protein, X-linked 2	protein from Mus musculus	2.5e-08
BLAST match view associations BLAST with Cbp20 Cbp20 Cbp20 cap binding protein 20	protein from Drosophila melanogaster	2.6e-08