RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4080
(403 letters)
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 82.8 bits (204), Expect = 2e-20
Identities = 49/81 (60%), Positives = 62/81 (76%)
Query: 173 RENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRD 232
R NP P+ CLGVFGLS+YTTE+ + +FSKYGP+ V +V D ++ RSRGF FVYFE+ D
Sbjct: 3 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVD 62
Query: 233 DAAAAKDACTGMEIDGRQIRV 253
DA AK+ GME+DGR+IRV
Sbjct: 63 DAKEAKERANGMELDGRRIRV 83
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 76.5 bits (188), Expect = 3e-18
Identities = 24/73 (32%), Positives = 34/73 (46%)
Query: 184 VFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTG 243
V L TE + FS GP+ + V D T RS G+ +V F+ DA A D
Sbjct: 5 VGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNF 64
Query: 244 MEIDGRQIRVDFS 256
I G+ +R+ +S
Sbjct: 65 DVIKGKPVRIMWS 77
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 77.4 bits (190), Expect = 4e-18
Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 7/114 (6%)
Query: 173 RENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRD 232
R P+ +R L + L T +++ IF KYGP+ ++ T +RG +V +E
Sbjct: 1 RLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQI---RVGNTPETRGTAYVVYEDIF 57
Query: 233 DAAAAKDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTYEQLNNTQSELG 286
DA A D +G + R + V + RA + EQL + + G
Sbjct: 58 DAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMD----TKKKEEQLKLLKEKYG 107
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 76.5 bits (188), Expect = 5e-18
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 176 PQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAK-TGRSRGFCFVYFESRDDA 234
Q + + V + +++I +FS +G ++ V + TG RGF FV F ++ DA
Sbjct: 5 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDA 64
Query: 235 AAAKDACT-GMEIDGRQIRVDFS 256
A +A + GR++ ++++
Sbjct: 65 KKAFNALCHSTHLYGRRLVLEWA 87
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 73.1 bits (179), Expect = 7e-17
Identities = 32/84 (38%), Positives = 46/84 (54%)
Query: 177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAA 236
+ S L V LS YTTE+QI +FSK G ++++ + +D + GFCFV + SR DA
Sbjct: 5 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAEN 64
Query: 237 AKDACTGMEIDGRQIRVDFSVTQR 260
A G +D R IR D+ +
Sbjct: 65 AMRYINGTRLDDRIIRTDWDAGFK 88
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 72.0 bits (176), Expect = 2e-16
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAA 236
R L V GL+ ++ ++ F +G + +++ +D +T + RGF FV FE +DAAA
Sbjct: 3 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAA 62
Query: 237 AKDACTGMEIDGRQIRVDFSVTQRAH 262
A D E+ GR IRV+ + R
Sbjct: 63 AIDNMNESELFGRTIRVNLAKPMRIK 88
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 67.3 bits (164), Expect = 8e-15
Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 173 RENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRD 232
+ Q + L V GL TTEQ + FS +G V V+V D KTG S+GF FV F +
Sbjct: 2 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYE 61
Query: 233 DAAAAKDACTGMEIDGRQIRVDFSVTQR 260
IDGR +++
Sbjct: 62 TQVKVMSQ--RHMIDGRWCDCKLPNSKQ 87
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 67.6 bits (165), Expect = 8e-15
Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 10/98 (10%)
Query: 172 GRENPQ-PSRCLGVFGLSIY-TTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFE 229
G+ +P+ + + + L+ + + IFSKYG + V +GF FV +
Sbjct: 7 GKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVH--------KGFAFVQYV 58
Query: 230 SRDDAAAAKDACTGMEIDGRQIRVDFSVTQRAHTPTPG 267
+ +A AA G I G+ + ++ + + + P
Sbjct: 59 NERNARAAVAGEDGRMIAGQVLDINLAAEPKVNRSGPS 96
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 66.5 bits (162), Expect = 1e-14
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 184 VFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTG 243
V L ++ I +F+++G +++ V D ++GRS G V+FE + DA A G
Sbjct: 5 VSNLDFGVSDADIQELFAEFGTLKKAAVHYD-RSGRSLGTADVHFERKADALKAMKQYNG 63
Query: 244 MEIDGRQIRVDFSVT 258
+ +DGR + + +
Sbjct: 64 VPLDGRPMNIQLVTS 78
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 66.6 bits (162), Expect = 1e-14
Identities = 20/73 (27%), Positives = 38/73 (52%)
Query: 184 VFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTG 243
V L T++++ +F GP+ ++ D KTG S G+ FV F S D+ A G
Sbjct: 7 VNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNG 66
Query: 244 MEIDGRQIRVDFS 256
+ + ++++V ++
Sbjct: 67 ITVRNKRLKVSYA 79
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 66.5 bits (162), Expect = 1e-14
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 184 VFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTG 243
V L T+ Q++ IF KYG + + ++ D TGR RG FV + R++A A A
Sbjct: 11 VTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNN 70
Query: 244 MEIDG--RQIRVDF 255
+ +G + + V
Sbjct: 71 VIPEGGSQPLSVRL 84
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 66.2 bits (161), Expect = 1e-14
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 184 VFGLSIYTTEQQINHIFSKYGPVERVEVVID---AKTGRSRGFCFVYFESRDDAAAAKDA 240
+ L+ TTE+ + +FSK G ++ + A S GF FV ++ + A A
Sbjct: 3 IKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQ 62
Query: 241 CTGMEIDGRQIRVDFSVTQRAHTP 264
G +DG ++ V S +RA P
Sbjct: 63 LQGHTVDGHKLEVRIS--ERATKP 84
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 66.6 bits (162), Expect = 2e-14
Identities = 23/88 (26%), Positives = 39/88 (44%)
Query: 173 RENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRD 232
+ V GL +E + +F + GPV + D TG+ +G+ FV F S +
Sbjct: 3 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 62
Query: 233 DAAAAKDACTGMEIDGRQIRVDFSVTQR 260
DA A +++ G+ IRV+ +
Sbjct: 63 DADYAIKIMDMIKLYGKPIRVNKASAHN 90
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 65.1 bits (158), Expect = 5e-14
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDD 233
E+ R L V LS TE I +FS+ GP + +++ + + +CFV F D
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITE--HTSNDPYCFVEFYEHRD 60
Query: 234 AAAAKDACTGMEIDGRQIRVDFSVTQR 260
AAAA A G +I G++++V+++ T
Sbjct: 61 AAAALAAMNGRKILGKEVKVNWATTPS 87
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 64.7 bits (157), Expect = 8e-14
Identities = 17/87 (19%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Query: 177 QPSRCLGVFGLSIYTTEQQI----NHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRD 232
+P+ + + L+ + ++ + IFS++G + + V + RG FV F+
Sbjct: 1 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRS---LKMRGQAFVIFKEVS 57
Query: 233 DAAAAKDACTGMEIDGRQIRVDFSVTQ 259
A A + G + +R+ ++ T
Sbjct: 58 SATNALRSMQGFPFYDKPMRIQYAKTD 84
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 63.8 bits (155), Expect = 9e-14
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 184 VFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTG 243
+ GLS TT++ + F ++G V+ V+ D T RSRGF FV F + +
Sbjct: 5 IGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ-SR 63
Query: 244 MEIDGRQIRVDF 255
E+D + I
Sbjct: 64 HELDSKTIDPKV 75
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 63.9 bits (155), Expect = 1e-13
Identities = 17/73 (23%), Positives = 37/73 (50%)
Query: 184 VFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTG 243
+ GL Y + Q+ + + +GP++ +V D+ TG S+G+ F + + A G
Sbjct: 6 IGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG 65
Query: 244 MEIDGRQIRVDFS 256
M++ +++ V +
Sbjct: 66 MQLGDKKLLVQRA 78
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 63.9 bits (155), Expect = 1e-13
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDD 233
+ P+ R L + GLS TT++ + F ++G + V+ D T RSRGF FV + + ++
Sbjct: 1 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 60
Query: 234 AAAAKDACTGMEIDGRQIRVDFSVT 258
AA +A ++DGR + +V+
Sbjct: 61 VDAAMNA-RPHKVDGRVVEPKRAVS 84
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 63.9 bits (155), Expect = 2e-13
Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 1/87 (1%)
Query: 174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDD 233
+ +R + L+ + + FS G V V ++ D + RS+G +V F
Sbjct: 13 PEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQS 72
Query: 234 AAAAKDACTGMEIDGRQIRVDFSVTQR 260
TG + G I V S ++
Sbjct: 73 -VPLAIGLTGQRLLGVPIIVQASQAEK 98
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 63.5 bits (154), Expect = 2e-13
Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 165 MVEEFADGRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFC 224
M+E+ ++ + +R L LS TE ++ +F + V + G+S+G
Sbjct: 3 MLEDPCTSKK-VRAARTLLAKNLSFNITEDELKEVFEDALEIRLVS-----QDGKSKGIA 56
Query: 225 FVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVTQRA 261
++ F+S DA + G EIDGR + + ++ +
Sbjct: 57 YIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGG 93
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 63.2 bits (153), Expect = 2e-13
Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 9/93 (9%)
Query: 180 RCLGVFGLSIYTTEQQINHIFSKYGPVERVEV-----VIDAKTGRSRGFCFVYFESRDDA 234
R L V + TE+ + F+ + + V+ + + + F F+ F S D+
Sbjct: 2 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDET 61
Query: 235 AAAKDACTGMEIDGRQIRVDFSVTQRAHTPTPG 267
A G+ G+ +++ + P PG
Sbjct: 62 TQAMA-FDGIIFQGQSLKIRRP---HDYQPLPG 90
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 62.8 bits (152), Expect = 2e-13
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 184 VFGLSIYTTEQQINHIFSKYGPVERVEVVI-DAKTGRSRGFCFVYFESRDDAAAAKDACT 242
+ L E+ + FS +G + + ++ D TG S+G+ F+ F S D + AA +A
Sbjct: 3 IGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMN 62
Query: 243 GMEIDGRQIRVDFS 256
G + R I V ++
Sbjct: 63 GQYLCNRPITVSYA 76
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 63.5 bits (154), Expect = 3e-13
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Query: 192 TEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQI 251
E+ + KYG VE + V + G +V F +DA A +G+ I
Sbjct: 40 FEEVFTEMEEKYGEVEEMNVCDN-LGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98
Query: 252 RVDFS 256
+ S
Sbjct: 99 HAELS 103
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 62.7 bits (152), Expect = 4e-13
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAA 236
+ L V L + T+E+ I F+ P V + R + FV+F +R+DA
Sbjct: 6 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAVE 59
Query: 237 AKDACTGMEIDGRQIRVDFS 256
A A G +DG I V +
Sbjct: 60 AMKALNGKVLDGSPIEVTLA 79
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 62.7 bits (152), Expect = 4e-13
Identities = 17/84 (20%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 173 RENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRD 232
++ + + G++ T+Q + FS +G + + V +G+ FV F + +
Sbjct: 12 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHE 65
Query: 233 DAAAAKDACTGMEIDGRQIRVDFS 256
AA A + G I+G ++ +
Sbjct: 66 SAAHAIVSVNGTTIEGHVVKCYWG 89
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 62.4 bits (151), Expect = 4e-13
Identities = 24/79 (30%), Positives = 41/79 (51%)
Query: 178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAA 237
+ + V LS T E + +F +G + R+ + D TG+S+GF F+ F R+DAA A
Sbjct: 7 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARA 66
Query: 238 KDACTGMEIDGRQIRVDFS 256
+G D + V+++
Sbjct: 67 IAGVSGFGYDHLILNVEWA 85
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 62.8 bits (152), Expect = 4e-13
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDD 233
E+ + L V + + + +F ++G + VE++ + S+GF FV FE+ D
Sbjct: 6 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN--ERGSKGFGFVTFENSAD 63
Query: 234 AAAAKDACTGMEIDGRQIRVDFSVTQRAHT 263
A A++ G ++GR+I V+ + T R T
Sbjct: 64 ADRAREKLHGTVVEGRKIEVNNA-TARVMT 92
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 62.0 bits (150), Expect = 5e-13
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 176 PQPS---RCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRD 232
PQ S L V + E +I F YG ++ + + +D +TG S+G+ V +E+
Sbjct: 1 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHK 60
Query: 233 DAAAAKDACTGMEIDGRQIRVDFSVTQ 259
A AAK+A G EI G+ I+VD+ +
Sbjct: 61 QALAAKEALNGAEIMGQTIQVDWCFVK 87
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 61.6 bits (149), Expect = 7e-13
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 184 VFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTG 243
V GL T++++ +FS+YG + +++D TG SRG F+ F+ R +A A G
Sbjct: 11 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 70
Query: 244 MEIDGR--QIRVDFS 256
+ G I V F+
Sbjct: 71 QKPSGATEPITVKFA 85
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 61.1 bits (148), Expect = 8e-13
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 184 VFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTG 243
V GLS T E++I F +G VE +E+ +D KT + RGFCF+ F+ + +
Sbjct: 4 VGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KY 62
Query: 244 MEIDGRQIRV 253
+ + +
Sbjct: 63 HNVGLSKCEI 72
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 64.3 bits (155), Expect = 8e-13
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 176 PQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAA 235
+ + V G+ T E + F +YG +E +E++ D +G+ RGF FV F+ D
Sbjct: 94 HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVD 153
Query: 236 AAKDACTGMEIDGRQIRVDFSVTQR 260
++G V +++++
Sbjct: 154 KIV-IQKYHTVNGHNCEVRKALSKQ 177
Score = 54.6 bits (130), Expect = 2e-09
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDD 233
+ P+ R L + GLS TT++ + F ++G + V+ D T RSRGF FV + + ++
Sbjct: 1 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 60
Query: 234 AAAAKDACTGM 244
AA +A
Sbjct: 61 VDAAMNARPHK 71
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 61.2 bits (148), Expect = 9e-13
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 184 VFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTG 243
+ GLS TT++ + FSK+G V + +D TGRSRGF FV F+ + D
Sbjct: 4 IGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ-KE 62
Query: 244 MEIDGRQIRV 253
+++G+ I
Sbjct: 63 HKLNGKVIDP 72
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 61.6 bits (149), Expect = 1e-12
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 173 RENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRD 232
+ + R L + GLS TTE+ + + + ++G + V+ D + RSRGF FV F S
Sbjct: 14 KREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMA 73
Query: 233 DAAAAKDACTGMEIDGRQIRVDFSV 257
+ AA A IDGR + +V
Sbjct: 74 EVDAAMAAR-PHSIDGRVVEPKRAV 97
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 60.1 bits (145), Expect = 3e-12
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 184 VFGLSIYTTEQQINHIFSKYGPVER--VEVVIDAKTGRSRGFCFVYFESRDDAAAAKDAC 241
+ G+ ++I +K + A ++RGF FV +ES AA A+
Sbjct: 6 IGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKL 65
Query: 242 --TGMEIDGRQIRVDFSVTQR 260
+++ G QI VD++ +
Sbjct: 66 MPGRIQLWGHQIAVDWAEPEI 86
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 60.1 bits (145), Expect = 4e-12
Identities = 21/87 (24%), Positives = 41/87 (47%)
Query: 170 ADGRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFE 229
A ++ L ++ L +Q + +F +G V +V ID +T S+ F FV ++
Sbjct: 9 AGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYD 68
Query: 230 SRDDAAAAKDACTGMEIDGRQIRVDFS 256
+ A AA + G +I ++++V
Sbjct: 69 NPVSAQAAIQSMNGFQIGMKRLKVQLK 95
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 59.5 bits (144), Expect = 5e-12
Identities = 14/96 (14%), Positives = 28/96 (29%), Gaps = 15/96 (15%)
Query: 172 GRENPQPSRCLGVFGL-----------SIYTTEQQINHIFSKYGPVERVEVVIDAKTGRS 220
G + R + + + + + + SK+G + ++ +
Sbjct: 1 GPSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDR----HP 56
Query: 221 RGFCFVYFESRDDAAAAKDACTGMEIDGRQIRVDFS 256
G V F ++A G GRQI
Sbjct: 57 DGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAW 92
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 59.4 bits (143), Expect = 7e-12
Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 8/94 (8%)
Query: 174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVV--------IDAKTGRSRGFCF 225
+ + + V GL+ T + F + G V+ + +D +TG+ +G
Sbjct: 3 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDAT 62
Query: 226 VYFESRDDAAAAKDACTGMEIDGRQIRVDFSVTQ 259
V +E A AA + G + G +++V + +
Sbjct: 63 VSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKK 96
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 58.6 bits (141), Expect = 7e-12
Identities = 20/73 (27%), Positives = 37/73 (50%)
Query: 184 VFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTG 243
V L T+++ +F G +E ++V D TG+S G+ FV + DA A + G
Sbjct: 7 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 66
Query: 244 MEIDGRQIRVDFS 256
+ + + I+V ++
Sbjct: 67 LRLQTKTIKVSYA 79
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 58.5 bits (141), Expect = 1e-11
Identities = 17/81 (20%), Positives = 29/81 (35%)
Query: 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDA 234
+ V + + +I F Y + + + G G V FESRD+A
Sbjct: 5 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEA 64
Query: 235 AAAKDACTGMEIDGRQIRVDF 255
AA I R++++
Sbjct: 65 TAAVIDLNDRPIGSRKVKLVL 85
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 59.0 bits (142), Expect = 1e-11
Identities = 28/97 (28%), Positives = 50/97 (51%)
Query: 177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAA 236
+ R + V + TE+Q+ IFS+ GPV +V D +TG+ +G+ F ++ ++ A +
Sbjct: 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALS 65
Query: 237 AKDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRP 273
A G E GR +RVD + +++ + G P
Sbjct: 66 AMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAP 102
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 57.8 bits (139), Expect = 1e-11
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 184 VFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTG 243
V GLS+ TT + + H F ++G V+ ++ D T R RGF FV FES D +
Sbjct: 4 VGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI-HF 62
Query: 244 MEIDGRQIRVDF 255
EI+ + +
Sbjct: 63 HEINNKMVECKK 74
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 58.6 bits (141), Expect = 1e-11
Identities = 19/87 (21%), Positives = 44/87 (50%)
Query: 177 QPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAA 236
+P++ L + LS TE+ + +F+++ + + TGR RG F+ F +++ A
Sbjct: 16 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQ 75
Query: 237 AKDACTGMEIDGRQIRVDFSVTQRAHT 263
A G ++ G+ + ++F ++ +
Sbjct: 76 ALHLVNGYKLYGKILVIEFGKNKKQRS 102
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 56.7 bits (136), Expect = 4e-11
Identities = 13/73 (17%), Positives = 28/73 (38%)
Query: 184 VFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTG 243
+ T++ I + V + + SR F ++ S++DA + G
Sbjct: 6 MTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNG 65
Query: 244 MEIDGRQIRVDFS 256
++I+G + S
Sbjct: 66 LKIEGYTLVTKVS 78
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 57.0 bits (137), Expect = 4e-11
Identities = 27/89 (30%), Positives = 41/89 (46%)
Query: 172 GRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESR 231
G S L V LS ++E+ + +FS YGP+ + ID+ T + +GF FV F
Sbjct: 1 GSSGSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFP 60
Query: 232 DDAAAAKDACTGMEIDGRQIRVDFSVTQR 260
+ A A G GR + V S ++
Sbjct: 61 EHAVKAYAEVDGQVFQGRMLHVLPSTIKK 89
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 57.1 bits (137), Expect = 4e-11
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 184 VFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTG 243
V GL +TT+ + F +G +E V+ D +TG+SRG+ FV R A A
Sbjct: 15 VGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP 74
Query: 244 MEIDGRQIRVDFSVT-QRAHTPTPGIYMG 271
+ IDGR+ V+ + + + G +G
Sbjct: 75 I-IDGRKANVNLAYLGAKPRSLQTGFAIG 102
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 56.7 bits (136), Expect = 5e-11
Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 5/83 (6%)
Query: 178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAA 237
PS L + + +E+ + +FS G V V + R + S ++A A
Sbjct: 9 PSATLHLSNIPPSVSEEDLKVLFSSNGGV----VKGFKFFQKDRKMALIQMGSVEEAVQA 64
Query: 238 KDACTGMEI-DGRQIRVDFSVTQ 259
++ + +RV FS +
Sbjct: 65 LIDLHNHDLGENHHLRVSFSKST 87
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 56.2 bits (135), Expect = 7e-11
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 184 VFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTG 243
+ L + + FS +G + +VV D S+G+ FV+FE+++ A A + G
Sbjct: 13 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNG 70
Query: 244 MEIDGRQIRVDFSVTQR 260
M ++ R++ V +++
Sbjct: 71 MLLNDRKVFVGRFKSRK 87
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 57.2 bits (137), Expect = 8e-11
Identities = 29/106 (27%), Positives = 46/106 (43%)
Query: 170 ADGRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFE 229
P R L V + E Q+ +F +YGP+E V++V D +T +SRG+ FV F+
Sbjct: 33 TQMNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQ 92
Query: 230 SRDDAAAAKDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTY 275
S A A G I ++++V + + G Y
Sbjct: 93 SGSSAQQAIAGLNGFNILNKRLKVALAASGHQRPGIAGAVGDGNGY 138
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 55.4 bits (133), Expect = 1e-10
Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 7/90 (7%)
Query: 178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAA 237
S + V + TE ++ FS+YG V V + R F FV F A +
Sbjct: 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPK-----PFRAFAFVTFADDQIAQSL 58
Query: 238 KDACTGMEIDGRQIRVDFSVTQRAHTPTPG 267
+ I G + + + + P
Sbjct: 59 CG--EDLIIKGISVHISNAEPKHNSNSGPS 86
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 55.2 bits (132), Expect = 2e-10
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDD 233
+ + + + LS + E+ + + ++G ++ V VV+ T S+G F F +++
Sbjct: 3 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEA 62
Query: 234 AAAAKDA------CTGMEIDGRQIRVDFSVT 258
A A G+++DGRQ++VD +VT
Sbjct: 63 AQKCLAAASLEAEGGGLKLDGRQLKVDLAVT 93
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 54.3 bits (130), Expect = 2e-10
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 184 VFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTG 243
V G+ T E + F +YG +E +E++ D +G+ RGF FV F+ D
Sbjct: 7 VGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV-IQKY 65
Query: 244 MEIDGRQIRVDFSV 257
++G V ++
Sbjct: 66 HTVNGHNCEVRKAL 79
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 54.3 bits (130), Expect = 2e-10
Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
Query: 176 PQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAA 235
P+ L V+G + T + FS +G + + + R FV +E + A
Sbjct: 2 PRKGNTLYVYGEDM--TPTLLRGAFSPFGNIIDLSMDPP------RNCAFVTYEKMESAD 53
Query: 236 AAKDACTGMEIDGRQIRVDFS 256
A G +++ Q++V+ +
Sbjct: 54 QAVAELNGTQVESVQLKVNIA 74
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 54.6 bits (131), Expect = 2e-10
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 184 VFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTG 243
V L TE+++ +F KYG V + D +GF F+ E+R A AK
Sbjct: 13 VGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDN 66
Query: 244 MEIDGRQIRVDFS 256
M + G+Q+RV F+
Sbjct: 67 MPLRGKQLRVRFA 79
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 55.0 bits (132), Expect = 2e-10
Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 6/91 (6%)
Query: 176 PQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAA 235
P + V L T ++ IFSK+G V ++ ++ + + A
Sbjct: 4 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQ 59
Query: 236 AAKDACTGMEI--DGRQIRVDFSVTQRAHTP 264
AK + G I +R+DFS +
Sbjct: 60 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVK 90
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 54.2 bits (129), Expect = 4e-10
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 176 PQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAA 235
L + L+ + ++ S+ + VV +TG +R F +V FES +D
Sbjct: 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDV-RTGTNRKFGYVDFESAEDLE 68
Query: 236 AAKDACTGMEIDGRQIRVDFS 256
A + TG+++ G +I+++
Sbjct: 69 KALE-LTGLKVFGNEIKLEKP 88
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 53.6 bits (128), Expect = 7e-10
Identities = 12/84 (14%), Positives = 31/84 (36%), Gaps = 7/84 (8%)
Query: 175 NPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDA 234
S + GL + Q+ + K G V+ + + + + + F + + +++
Sbjct: 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEES 69
Query: 235 AAAKDACTGMEI-DGRQIRVDFSV 257
A G E+ D ++ +
Sbjct: 70 KRAYVTLNGKEVVDDLGQKITLYL 93
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 52.8 bits (126), Expect = 8e-10
Identities = 16/78 (20%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Query: 184 VFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTG 243
+ LS T + +F + + G+ FV + ++ A A + +G
Sbjct: 6 IGNLSPAVTADDLRQLFGDRKLP------LAGQVLLKSGYAFVDYPDQNWAIRAIETLSG 59
Query: 244 -MEIDGRQIRVDFSVTQR 260
+E+ G+ + VD+SV+++
Sbjct: 60 KVELHGKIMEVDYSVSKK 77
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 53.6 bits (128), Expect = 9e-10
Identities = 19/94 (20%), Positives = 31/94 (32%), Gaps = 1/94 (1%)
Query: 173 RENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRD 232
R P + L TE+ I F + R +GF + FE D
Sbjct: 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLD 68
Query: 233 DAAAAKDACTGMEIDGRQIRVDFSVTQRAHTPTP 266
+A + + ++IRVD + + P
Sbjct: 69 SLLSAL-SLNEESLGNKRIRVDVADQAQDKDSGP 101
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 53.0 bits (126), Expect = 2e-09
Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 1/84 (1%)
Query: 173 RENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRD 232
R + C+ + GL + + F K VE + G++ G FV F +
Sbjct: 12 RSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEA 71
Query: 233 DAAAAKDACTGMEIDGRQIRVDFS 256
D AA + R I+V
Sbjct: 72 DYKAALCRH-KQYMGNRFIQVHPI 94
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 52.5 bits (125), Expect = 2e-09
Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 1/79 (1%)
Query: 178 PSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAA 237
C + + T+ + E V+ G+ G V F++ DDA +
Sbjct: 7 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKS 66
Query: 238 KDACTGMEIDGRQIRVDFS 256
+ +++GR+ V
Sbjct: 67 E-RLHRKKLNGREAFVHVV 84
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 52.7 bits (126), Expect = 2e-09
Identities = 18/96 (18%), Positives = 28/96 (29%), Gaps = 12/96 (12%)
Query: 177 QPSRCL---GVFG-------LSIYTTEQQINHIFSKYGPVERVEVVIDAKTGR--SRGFC 224
P+ L + + + SKYG V+ +E+ G
Sbjct: 2 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKI 61
Query: 225 FVYFESRDDAAAAKDACTGMEIDGRQIRVDFSVTQR 260
FV F S D A TG + R + +
Sbjct: 62 FVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDS 97
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 52.0 bits (124), Expect = 2e-09
Identities = 14/91 (15%), Positives = 29/91 (31%), Gaps = 9/91 (9%)
Query: 173 RENPQPSRCLGVFGL-SIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESR 231
+ + R + + Q+ + +G + F+ +
Sbjct: 2 KGRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNH------LILNKINEAFIEMATT 55
Query: 232 DDAAAAKDACT--GMEIDGRQIRVDFSVTQR 260
+DA AA D T + G+ +RV S +
Sbjct: 56 EDAQAAVDYYTTTPALVFGKPVRVHLSQKYK 86
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 51.8 bits (123), Expect = 3e-09
Identities = 22/94 (23%), Positives = 33/94 (35%), Gaps = 1/94 (1%)
Query: 173 RENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRD 232
+ + + GL ++++I FS V + GRS G FV F S++
Sbjct: 9 SPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQE 68
Query: 233 DAAAAKDACTGMEIDGRQIRVDFSVTQRAHTPTP 266
A A I R I + S T P
Sbjct: 69 IAEKALK-KHKERIGHRYIEIFKSSRAEVRTSGP 101
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 51.3 bits (122), Expect = 6e-09
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 8/95 (8%)
Query: 173 RENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRD 232
S + V GL E + K+G + V ++ + V FE+ D
Sbjct: 9 HHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENID 62
Query: 233 DAAAAKDACT--GMEIDGRQIRVDFSVTQRAHTPT 265
A + I G+Q ++S ++R P
Sbjct: 63 SAKECVTFAADVPVYIAGQQAFFNYSTSKRITRPG 97
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 50.8 bits (121), Expect = 7e-09
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 176 PQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAA 235
+ V L + I +F KYG + +++ F FV FE DA
Sbjct: 11 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLK---NRRGGPPFAFVEFEDPRDAE 67
Query: 236 AAKDACTGMEIDGRQIRVDFSVTQR 260
A G + DG ++RV+F + R
Sbjct: 68 DAVYGRDGYDYDGYRLRVEFPRSGR 92
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 50.5 bits (120), Expect = 7e-09
Identities = 40/73 (54%), Positives = 47/73 (64%)
Query: 184 VFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTG 243
V GLS T EQ + +FSKYG + V VV D +T RSRGF FV FE+ DDA A A G
Sbjct: 10 VGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNG 69
Query: 244 MEIDGRQIRVDFS 256
+DGRQIRVD +
Sbjct: 70 KSVDGRQIRVDQA 82
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 49.8 bits (118), Expect = 7e-09
Identities = 17/69 (24%), Positives = 32/69 (46%)
Query: 184 VFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTG 243
+ GL TT+Q + + YG + + ++D T + +G+ FV F+S A A A
Sbjct: 3 IRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKA 62
Query: 244 MEIDGRQIR 252
+ + +
Sbjct: 63 SGVQAQMAK 71
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 49.4 bits (117), Expect = 2e-08
Identities = 14/88 (15%), Positives = 26/88 (29%), Gaps = 7/88 (7%)
Query: 179 SRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAK 238
S + V L + Q+++ + Y R++ FV + + A A
Sbjct: 5 SSGILVKNLPQDSNCQEVHDLLKDYDLKYC-------YVDRNKRTAFVTLLNGEQAQNAI 57
Query: 239 DACTGMEIDGRQIRVDFSVTQRAHTPTP 266
G+ + V T P
Sbjct: 58 QMFHQYSFRGKDLIVQLQPTDALLCSGP 85
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2,
PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 49.1 bits (116), Expect = 2e-08
Identities = 14/93 (15%), Positives = 35/93 (37%), Gaps = 8/93 (8%)
Query: 173 RENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRD 232
+ + PSR L + L TE ++ + +G V + ++ + F+ + +
Sbjct: 2 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEE 55
Query: 233 DAAAAKDACT--GMEIDGRQIRVDFSVTQRAHT 263
A + + + + I + +S + T
Sbjct: 56 AAITMVNYYSAVTPHLRNQPIYIQYSNHKELKT 88
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 48.9 bits (116), Expect = 3e-08
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 172 GRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESR 231
G P+ L V GL T+ + F ++G + ++ V F ++ +ES
Sbjct: 10 GYGKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESL 63
Query: 232 DDAAAAKDACTGMEIDG--RQIRVDFS 256
D A AA G + G R++RVDF+
Sbjct: 64 DAAQAACAKMRGFPLGGPDRRLRVDFA 90
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 49.0 bits (116), Expect = 4e-08
Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 6/103 (5%)
Query: 179 SRCLGVFGLSIY-TTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAA 237
+ L V L+ T Q + +F YG V+RV+++ + V + A A
Sbjct: 2 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILF-----NKKENALVQMADGNQAQLA 56
Query: 238 KDACTGMEIDGRQIRVDFSVTQRAHTPTPGIYMGRPTYEQLNN 280
G ++ G+ IR+ S Q P G T + N+
Sbjct: 57 MSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNS 99
Score = 25.1 bits (54), Expect = 9.3
Identities = 7/37 (18%), Positives = 18/37 (48%)
Query: 51 RLSPARSGSAGSIDDKKYRKSITRSRSGSPHRRSKRP 87
R++ ++ + + + + +T+ SP R K+P
Sbjct: 71 RITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKP 107
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 86
Score = 47.0 bits (111), Expect = 1e-07
Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Query: 179 SRCLGVFGLSI-YTTEQQINHIFSKYGPVERVEVVIDAK-TGRSRGFCFVYFESRDDAAA 236
R + + LS E + F +G +E++ + K + F+ FE++D A
Sbjct: 4 GREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAER 63
Query: 237 AKDACTGMEIDGRQIRVDFS 256
A + R+I V +
Sbjct: 64 AL-QMNRSLLGNREISVSLA 82
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 46.7 bits (110), Expect = 1e-07
Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 2/83 (2%)
Query: 174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDD 233
+N +R + + G T I G V + +G FV F+S +
Sbjct: 1 KNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLN-IQMRRTLHKAFKGSIFVVFDSIES 59
Query: 234 AAAAKDACTGMEIDGRQIRVDFS 256
A + G + + + F
Sbjct: 60 AKKFVET-PGQKYKETDLLILFK 81
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 47.5 bits (112), Expect = 1e-07
Identities = 11/74 (14%), Positives = 24/74 (32%), Gaps = 6/74 (8%)
Query: 191 TTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTGMEIDGRQ 250
T + +F Y + + F + AA A+ E G++
Sbjct: 22 ETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKE 75
Query: 251 IRVDFSVTQRAHTP 264
+++ F+ T +
Sbjct: 76 MKLYFAQTLHIGSS 89
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 46.8 bits (110), Expect = 1e-07
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 174 ENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDD 233
E P P++ L + L T E ++ +F+++ + V +V FV F +
Sbjct: 4 EQP-PNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVP-----NRHDIAFVEFTTELQ 57
Query: 234 AAAAKDACTGMEID-GRQIRVDFS 256
+ AAK+A G +I +++ F+
Sbjct: 58 SNAAKEALQGFKITPTHAMKITFA 81
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 46.0 bits (108), Expect = 3e-07
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 6/76 (7%)
Query: 184 VFGLSIYTTEQQINHIF---SKYGPVERVEVVIDAKTGRS---RGFCFVYFESRDDAAAA 237
V GLS + ++ K+G + +V + S +V + +DA A
Sbjct: 13 VVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRA 72
Query: 238 KDACTGMEIDGRQIRV 253
+ +DGR ++
Sbjct: 73 IQCVNNVVVDGRTLKA 88
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 45.9 bits (108), Expect = 4e-07
Identities = 22/91 (24%), Positives = 32/91 (35%), Gaps = 3/91 (3%)
Query: 176 PQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAA 235
C+ + GL TE I + FS P+ GR G V F + +DA
Sbjct: 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHI--EIGPDGRVTGEADVEFATHEDAV 69
Query: 236 AAKDACTGMEIDGRQIRVDFSVTQRAHTPTP 266
AA A + R + + + T P
Sbjct: 70 AAM-AKDKANMQHRYVELFLNSTAGTSGSGP 99
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 75
Score = 44.1 bits (103), Expect = 1e-06
Identities = 13/71 (18%), Positives = 20/71 (28%), Gaps = 3/71 (4%)
Query: 184 VFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTG 243
V L + ++ F GP+ V+V K AA T
Sbjct: 5 VKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAI---TKTH 61
Query: 244 MEIDGRQIRVD 254
+ +I V
Sbjct: 62 KVVGQNEIIVS 72
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 43.8 bits (103), Expect = 1e-06
Identities = 10/68 (14%), Positives = 23/68 (33%), Gaps = 8/68 (11%)
Query: 184 VFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTG 243
VFG + + F++YG + + + + + ++S+ A A G
Sbjct: 9 VFGFPQASASYILLQ-FAQYGNILKH------VMSNTGNWMHIRYQSKLQARKALSKD-G 60
Query: 244 MEIDGRQI 251
+
Sbjct: 61 RIFGESIM 68
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 42.1 bits (98), Expect = 9e-06
Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 1/84 (1%)
Query: 173 RENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRD 232
++ Q L + L + EQ++ ++ +G V ++ +G SRG F ES +
Sbjct: 12 KQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVIS-TRILRDSSGTSRGVGFARMESTE 70
Query: 233 DAAAAKDACTGMEIDGRQIRVDFS 256
A G I +
Sbjct: 71 KCEAVIGHFNGKFIKTPPGVSAPT 94
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 41.7 bits (97), Expect = 1e-05
Identities = 12/97 (12%), Positives = 26/97 (26%), Gaps = 7/97 (7%)
Query: 170 ADGRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFE 229
+ G + + V GL + Q + + G V + G V +
Sbjct: 6 SGGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCY-------ADVQKDGMGMVEYL 58
Query: 230 SRDDAAAAKDACTGMEIDGRQIRVDFSVTQRAHTPTP 266
++D A + + + + P
Sbjct: 59 RKEDMEYALRKLDDTKFRSHEGETSYIRVYPERSSGP 95
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 38.7 bits (89), Expect = 8e-05
Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 7/75 (9%)
Query: 184 VFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTG 243
+ GL T Q+++ + S Y + +G FV + + A AA +
Sbjct: 3 IRGLPGDVTNQEVHDLLSDYELKYC-------FVDKYKGTAFVTLLNGEQAEAAINTFHQ 55
Query: 244 MEIDGRQIRVDFSVT 258
+ R++ V T
Sbjct: 56 SRLRERELSVQLQPT 70
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 37.1 bits (85), Expect = 6e-04
Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 7/83 (8%)
Query: 177 QPSRCLGVF--GLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDA 234
+ CL F L T + ++ +FS +G ++ ++ V AK G + E +A
Sbjct: 7 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIIL-----FKEKAKEA 61
Query: 235 AAAKDACTGMEIDGRQIRVDFSV 257
+ R V + V
Sbjct: 62 LGKAKDANNGNLQLRNKEVTWEV 84
>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 99
Score = 35.4 bits (80), Expect = 0.002
Identities = 12/89 (13%), Positives = 31/89 (34%), Gaps = 5/89 (5%)
Query: 173 RENPQPSRCLGVFGLSIY-TTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESR 231
+ + R + + L ++ + + YG ++ ++ +S+ F +
Sbjct: 12 DQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM----KSQAFIEMETRED 67
Query: 232 DDAAAAKDACTGMEIDGRQIRVDFSVTQR 260
A + GR ++VD S +
Sbjct: 68 AMAMVDHCLKKALWFQGRCVKVDLSEKYK 96
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 32.6 bits (73), Expect = 0.012
Identities = 12/84 (14%), Positives = 22/84 (26%), Gaps = 7/84 (8%)
Query: 184 VFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFVYFESRDDAAAAKDACTG 243
V GL + Q + + G V G V F ++D A
Sbjct: 5 VSGLPPSGSWQDLKDHMREAGDVCY-------ADVYRDGTGVVEFVRKEDMTYAVRKLDN 57
Query: 244 MEIDGRQIRVDFSVTQRAHTPTPG 267
+ + + + +P
Sbjct: 58 TKFRSHEGETAYIRVKVDGPRSPS 81
>d2gu2a1 c.56.5.7 (A:4-310) Aspartoacylase AspA {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 307
Score = 31.1 bits (70), Expect = 0.23
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 193 EQQINHIFSKYGPVERVEVVIDAKTGRSR-GFCFVYFESRDDAAAA 237
Q+INH+F + +VV D S G + +S +D
Sbjct: 89 AQEINHLFGPKNSDDAYDVVFDLHNTTSNMGCTLILGDSGNDFLIQ 134
>d2gycg2 d.47.1.1 (G:2-72) Ribosomal protein L11, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 71
Score = 27.0 bits (60), Expect = 0.81
Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
Query: 172 GRENPQP--SRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDAKTGRSRGFCFV 226
G NP P LG G++I + N + VVI RS F FV
Sbjct: 14 GMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVYADRS--FTFV 68
>d2g7la1 a.4.1.9 (A:16-83) Putative transcriptional regulator
SCO7704 {Streptomyces coelicolor [TaxId: 1902]}
Length = 68
Score = 26.7 bits (59), Expect = 1.1
Identities = 5/38 (13%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 213 IDAKTGRSRGFCFVYFESRDD--AAAAKDACTGMEIDG 248
+ + +VY + + AA +++ G
Sbjct: 30 LAQELDTGPASLYVYVANTAELHAAVLDALLGEVDLTG 67
>d1fsea_ a.4.6.2 (A:) Germination protein GerE {Bacillus subtilis
[TaxId: 1423]}
Length = 67
Score = 26.2 bits (58), Expect = 1.4
Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 170 ADGRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDA 215
+ + + L +S T I++ K G R + V++
Sbjct: 17 VQDKTTKEIASELF---ISEKTVRNHISNAMQKLGVKGRSQAVVEL 59
>d1yioa1 a.4.6.2 (A:131-200) Response regulatory protein StyR,
C-terminal domain {Pseudomonas fluorescens [TaxId: 294]}
Length = 70
Score = 26.2 bits (58), Expect = 1.7
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 170 ADGRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVV 212
G N Q + LG ++ T + ++I K +V
Sbjct: 25 IRGLMNKQIAGELG---IAEVTVKVHRHNIMQKLNVRSLANLV 64
>d1l3la1 a.4.6.2 (A:170-234) Quorum-sensing transcription factor
TraR, C-terminal domain {Agrobacterium tumefaciens
[TaxId: 358]}
Length = 65
Score = 25.9 bits (57), Expect = 1.9
Identities = 4/46 (8%), Positives = 15/46 (32%), Gaps = 3/46 (6%)
Query: 170 ADGRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDA 215
A G+ + + G + + ++ ++ + + A
Sbjct: 17 AVGKTMEEIADVEG---VKYNSVRVKLREAMKRFDVRSKAHLTALA 59
>d1a04a1 a.4.6.2 (A:150-216) Nitrate/nitrite response regulator
(NarL) {Escherichia coli [TaxId: 562]}
Length = 67
Score = 25.1 bits (55), Expect = 4.1
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 170 ADGRENPQPSRCLGVFGLSIYTTEQQINHIFSKYGPVERVEVVIDA 215
A G N +R L ++ T + + H+ K RVE +
Sbjct: 19 AQGLPNKMIARRLD---ITESTVKVHVKHMLKKMKLKSRVEAAVWV 61
>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 348
Score = 27.2 bits (59), Expect = 4.2
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 301 EEVFGEIATVVGVGAVTMTEMSGNGRISPLQFS 333
E E+A +VG+ AV + +M G RI+ +F
Sbjct: 308 IEHPEEVADLVGISAVMIQDMQGK-RINNYEFK 339
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.134 0.399
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,511,245
Number of extensions: 71329
Number of successful extensions: 321
Number of sequences better than 10.0: 1
Number of HSP's gapped: 265
Number of HSP's successfully gapped: 98
Length of query: 403
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 316
Effective length of database: 1,213,086
Effective search space: 383335176
Effective search space used: 383335176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.2 bits)