Query psy4082
Match_columns 86
No_of_seqs 36 out of 38
Neff 3.1
Searched_HMMs 29240
Date Sat Aug 17 00:51:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4082.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4082hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rgt_A Fusion of LIM/homeobox 94.2 0.016 5.5E-07 39.2 1.5 32 48-79 138-169 (169)
2 1fqj_C Retinal ROD rhodopsin-s 36.3 8.7 0.0003 22.4 0.3 11 75-85 21-31 (42)
3 2ju4_A GMP-PDE gamma, retinal 16.9 44 0.0015 22.0 0.9 11 75-85 66-76 (87)
4 2k2b_A Degenerin MEC-4; membra 15.1 51 0.0017 22.3 0.9 17 46-62 91-107 (111)
5 3gha_A Disulfide bond formatio 10.3 69 0.0024 21.5 0.4 32 47-78 11-42 (202)
6 3hr5_R M1prime-derived peptide 9.5 1.2E+02 0.004 16.8 1.1 27 36-62 5-32 (35)
7 1whr_A Hypothetical KIAA1002 p 8.4 1.5E+02 0.0051 19.7 1.4 16 4-19 58-73 (124)
8 1ass_A Thermosome; chaperonin, 8.2 1.1E+02 0.0037 20.6 0.7 20 12-31 83-102 (159)
9 1gml_A T-complex protein 1 sub 7.7 1.1E+02 0.0038 20.8 0.5 18 12-29 89-106 (178)
10 3j0g_M E3 protein; alphavirus, 6.8 1.3E+02 0.0046 18.4 0.6 9 3-11 40-48 (59)
No 1
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=94.24 E-value=0.016 Score=39.18 Aligned_cols=32 Identities=59% Similarity=1.025 Sum_probs=21.8
Q ss_pred ccccceeeeccCcCCCCCCCCcceeeecCCCc
Q psy4082 48 MQGIPMVASSPVRHDSPIGMNALEVTSYQPPW 79 (86)
Q Consensus 48 mtG~PmVAsSPvrhes~i~~~pveVqsyqpPW 79 (86)
+..+.+-+..+..++...+.++.++++|||||
T Consensus 138 rprt~~~~~q~~~l~~~f~~~~~~~~~~~~~~ 169 (169)
T 2rgt_A 138 GGGTPMVAASPERHDGGLQANPVEVQSYQPPW 169 (169)
T ss_dssp ---EEEECCCCEECCSSCCCCCCCCCC-----
T ss_pred CCCCcccHHHHHHHHHHHhCCCCcccccCCCC
Confidence 44457778889999999999999999999999
No 2
>1fqj_C Retinal ROD rhodopsin-sensitive CGMP 3',5'- cyclic phosphodiesterase gamma-subunit...; RGS9, transducin, effector, pdegamma, G protein; HET: GDP; 2.02A {Bos taurus} SCOP: j.51.1.1
Probab=36.26 E-value=8.7 Score=22.44 Aligned_cols=11 Identities=27% Similarity=0.745 Sum_probs=8.9
Q ss_pred cCCCcccCCCC
Q psy4082 75 YQPPWKALSDF 85 (86)
Q Consensus 75 yqpPWKaLSdF 85 (86)
.-|||.|+|+.
T Consensus 21 ViCPWEAf~~l 31 (42)
T 1fqj_C 21 VICPWEAFNHL 31 (42)
T ss_dssp TTCGGGGGTTS
T ss_pred EEcchHhcCch
Confidence 45899999875
No 3
>2ju4_A GMP-PDE gamma, retinal ROD rhodopsin-sensitive CGMP 3',5'-cyclic phosphodiesterase subunit gamma...; intrinsic disordered protein; HET: RCY; NMR {Bos taurus}
Probab=16.87 E-value=44 Score=21.98 Aligned_cols=11 Identities=27% Similarity=0.555 Sum_probs=8.7
Q ss_pred cCCCcccCCCC
Q psy4082 75 YQPPWKALSDF 85 (86)
Q Consensus 75 yqpPWKaLSdF 85 (86)
.-|||.|+|+.
T Consensus 66 vicpweaf~hl 76 (87)
T 2ju4_A 66 VICPWEACNHC 76 (87)
T ss_dssp TCCTTTTTTCC
T ss_pred EEcchhhhcch
Confidence 45899999874
No 4
>2k2b_A Degenerin MEC-4; membrane associated, minimal constraint, detergent solubilized, glycoprotein, ION transport, ionic channel; NMR {Caenorhabditis elegans}
Probab=15.06 E-value=51 Score=22.33 Aligned_cols=17 Identities=41% Similarity=0.886 Sum_probs=14.2
Q ss_pred CcccccceeeeccCcCC
Q psy4082 46 GSMQGIPMVASSPVRHD 62 (86)
Q Consensus 46 ~gmtG~PmVAsSPvrhe 62 (86)
.+-.|+||+...|..|.
T Consensus 91 ~Sahgipmigeaplehh 107 (111)
T 2k2b_A 91 TSAHGIPMIGEAPLEHH 107 (111)
T ss_dssp SSCSSCCSSSCCCCCCC
T ss_pred ccccCCcccCcCcchhc
Confidence 36789999999998773
No 5
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
Probab=10.27 E-value=69 Score=21.51 Aligned_cols=32 Identities=22% Similarity=0.452 Sum_probs=22.5
Q ss_pred cccccceeeeccCcCCCCCCCCcceeeecCCC
Q psy4082 47 SMQGIPMVASSPVRHDSPIGMNALEVTSYQPP 78 (86)
Q Consensus 47 gmtG~PmVAsSPvrhes~i~~~pveVqsyqpP 78 (86)
.+++.|-+.++|+.-...-.-..+|...|+||
T Consensus 11 ~~~~~~~~~~~~~~G~~~a~vtvvef~D~~CP 42 (202)
T 3gha_A 11 AVSGQPSIKGQPVLGKDDAPVTVVEFGDYKCP 42 (202)
T ss_dssp CCCSCCCCTTSCEESCTTCSEEEEEEECTTCH
T ss_pred cccCCCCCCCCceecCCCCCEEEEEEECCCCh
Confidence 56667777777777655445566777888888
No 6
>3hr5_R M1prime-derived peptide; FAB-peptide complex, immune system; 2.40A {Mus musculus}
Probab=9.49 E-value=1.2e+02 Score=16.82 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=18.2
Q ss_pred hhcCCCccccCc-ccccceeeeccCcCC
Q psy4082 36 ISMDGRKMGYGS-MQGIPMVASSPVRHD 62 (86)
Q Consensus 36 Qqq~~~k~~~~g-mtG~PmVAsSPvrhe 62 (86)
|..+++-+|-.| .+|+|--|+.++.|.
T Consensus 5 qrapdrvlchsgqqqglpraaggsvphp 32 (35)
T 3hr5_R 5 QRAPDRVLCHSGQQQGLPRAAGGSVPHP 32 (35)
T ss_pred ccCCceEEeeccccccCccccCCCCCCC
Confidence 344555555433 579999999988874
No 7
>1whr_A Hypothetical KIAA1002 protein; R3H domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.68.7.1
Probab=8.38 E-value=1.5e+02 Score=19.73 Aligned_cols=16 Identities=38% Similarity=0.623 Sum_probs=12.8
Q ss_pred hhhhhhhhhhhhhhHh
Q psy4082 4 AGYYQLLWHRVSVHFL 19 (86)
Q Consensus 4 ~~~~~~~~~~~~~~~~ 19 (86)
.-|+.+|=|||.-||-
T Consensus 58 nSy~RllvHrvAe~yg 73 (124)
T 1whr_A 58 TSYHRMLLHRVAAYFG 73 (124)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhC
Confidence 3588899999988873
No 8
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A
Probab=8.24 E-value=1.1e+02 Score=20.55 Aligned_cols=20 Identities=30% Similarity=0.546 Sum_probs=15.2
Q ss_pred hhhhhhHhhhhhhhhcchhh
Q psy4082 12 HRVSVHFLARVGIMVNAPLR 31 (86)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~mk 31 (86)
...+.|||++.|||+---.+
T Consensus 83 ~d~a~~~l~k~gI~~v~~v~ 102 (159)
T 1ass_A 83 DDVAQHYLAKEGIYAVRRVK 102 (159)
T ss_dssp CHHHHHHHHHTTCEEECSCC
T ss_pred CHHHHHHHHHCCCEEEccCC
Confidence 35678999999999754444
No 9
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Probab=7.66 E-value=1.1e+02 Score=20.78 Aligned_cols=18 Identities=17% Similarity=0.349 Sum_probs=14.0
Q ss_pred hhhhhhHhhhhhhhhcch
Q psy4082 12 HRVSVHFLARVGIMVNAP 29 (86)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~ 29 (86)
.....|||++.|||+---
T Consensus 89 ~d~a~~~l~k~gI~~vr~ 106 (178)
T 1gml_A 89 SDLAQHYLMRANVTAIRR 106 (178)
T ss_dssp CHHHHHHHHHTTCEEECC
T ss_pred cHHHHHHHHHCCCEEEec
Confidence 456789999999997443
No 10
>3j0g_M E3 protein; alphavirus, bioweapon, VEEV; 4.80A {Venezuelan equine encephalitis virus}
Probab=6.75 E-value=1.3e+02 Score=18.40 Aligned_cols=9 Identities=44% Similarity=0.630 Sum_probs=6.7
Q ss_pred chhhhhhhh
Q psy4082 3 AAGYYQLLW 11 (86)
Q Consensus 3 ~~~~~~~~~ 11 (86)
..|||+||=
T Consensus 40 ~pgY~~LL~ 48 (59)
T 3j0g_M 40 NPGYDELLE 48 (59)
T ss_dssp STTHHHHHH
T ss_pred CccHHHHHH
Confidence 368999873
Done!