RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy4082
         (86 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 37.3 bits (86), Expect = 2e-04
 Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 29/97 (29%)

Query: 10   LWHRVSVHFLARVG-----IMVNAPLR-TLLFISMDGRKM--GYGSMQGIPMV------- 54
            +W+R   HF    G     I++N P+  T+ F    G+++   Y +M    +V       
Sbjct: 1645 VWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTE 1704

Query: 55   --------ASSPVRHDSPIGMNALEVTSY-QPPWKAL 82
                     S+     S  G   L  T + QP   AL
Sbjct: 1705 KIFKEINEHSTSYTFRSEKG--LLSATQFTQP---AL 1736


>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein
           ISL-1; protein-protein complex, LIM domain, Zn finger,
           activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
          Length = 169

 Score = 35.6 bits (82), Expect = 5e-04
 Identities = 19/30 (63%), Positives = 22/30 (73%)

Query: 50  GIPMVASSPVRHDSPIGMNALEVTSYQPPW 79
           G PMVA+SP RHD  +  N +EV SYQPPW
Sbjct: 140 GTPMVAASPERHDGGLQANPVEVQSYQPPW 169


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 25.2 bits (54), Expect = 3.0
 Identities = 6/25 (24%), Positives = 12/25 (48%)

Query: 8   QLLWHRVSVHFLARVGIMVNAPLRT 32
           Q L +++  ++ +R     N  LR 
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRI 227


>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase;
           HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP:
           b.47.1.2 PDB: 1fiz_A*
          Length = 290

 Score = 24.6 bits (54), Expect = 5.3
 Identities = 9/39 (23%), Positives = 16/39 (41%)

Query: 41  RKMGYGSMQGIPMVASSPVRHDSPIGMNALEVTSYQPPW 79
            K+G  ++  I +  +SP         +     S +PPW
Sbjct: 246 SKIGSTAVHMIQLPTASPASTPGAQASSGSVQPSVRPPW 284


>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
           PIN-tower interface, coupling hydrolysis to DNA
           unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
          Length = 459

 Score = 24.6 bits (53), Expect = 5.8
 Identities = 6/27 (22%), Positives = 13/27 (48%)

Query: 59  VRHDSPIGMNALEVTSYQPPWKALSDF 85
            R ++PI   A +V + +  +  + D 
Sbjct: 197 KRSNAPIIDVATDVRNGKWIYDKVVDG 223


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.326    0.137    0.432 

Gapped
Lambda     K      H
   0.267   0.0547    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,346,425
Number of extensions: 65227
Number of successful extensions: 173
Number of sequences better than 10.0: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 6
Length of query: 86
Length of database: 6,701,793
Length adjustment: 54
Effective length of query: 32
Effective length of database: 5,194,059
Effective search space: 166209888
Effective search space used: 166209888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.8 bits)