RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4082
         (86 letters)



>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal
          fragment {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 584

 Score = 25.9 bits (56), Expect = 0.62
 Identities = 8/25 (32%), Positives = 17/25 (68%)

Query: 33 LLFISMDGRKMGYGSMQGIPMVASS 57
          LLFI + G  + +G M+ + +++S+
Sbjct: 54 LLFIFLLGHDIDFGHMEAVNLLSSN 78


>d2oqea1 b.30.2.1 (A:237-672) Copper amine oxidase, domain 3 {Yeast
           (Hansenula polymorpha) [TaxId: 4905]}
          Length = 436

 Score = 24.1 bits (52), Expect = 2.9
 Identities = 8/61 (13%), Positives = 16/61 (26%)

Query: 17  HFLARVGIMVNAPLRTLLFISMDGRKMGYGSMQGIPMVASSPVRHDSPIGMNALEVTSYQ 76
               R   + N              K+       +     S V   +P   +++ V  Y+
Sbjct: 281 SATGRSWDIFNPNKVNPYSGKPPSYKLVSTQCPPLLAKEGSLVAKRAPWASHSVNVVPYK 340

Query: 77  P 77
            
Sbjct: 341 D 341


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.137    0.432 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 321,109
Number of extensions: 11717
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 4
Length of query: 86
Length of database: 2,407,596
Length adjustment: 51
Effective length of query: 35
Effective length of database: 1,707,366
Effective search space: 59757810
Effective search space used: 59757810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.4 bits)