BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4083
(374 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7KLV9|PSD11_DROME 26S proteasome non-ATPase regulatory subunit 11 OS=Drosophila
melanogaster GN=Rpn6 PE=1 SV=1
Length = 422
Score = 533 bits (1372), Expect = e-150, Method: Compositional matrix adjust.
Identities = 275/422 (65%), Positives = 313/422 (74%), Gaps = 48/422 (11%)
Query: 1 MAGAMMFERSASQISITGNSYKTGY---------EEENHDEEVKAKEQNILQLGEKYKQE 51
MAGA +FER+ + S+ + EN +E ++ KEQ ILQ GE YKQE
Sbjct: 1 MAGATLFERAQALSSVNREEQDSSLLNKLVRDQEGAENDEERIRIKEQGILQQGELYKQE 60
Query: 52 GKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEE 111
GKA ELA+LIK TRPFLS ISKAKAAKLVRSLVD FLD++ TG+EV LCK+CIEWAK+E
Sbjct: 61 GKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE 120
Query: 112 RRTFLRQSLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHAL 171
+RTFLRQSLEARLIALYFDT YTEAL L + LL+ELKKLDDKNLLVEV LLESKTYHAL
Sbjct: 121 KRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHAL 180
Query: 172 SNLSTSRASLTSARTTANSIYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEGFS 231
SNL +RA+LTSARTTAN+IYCPPK+Q ALDLQSGILHAADE+DFKTAFSYFYEAFEGF
Sbjct: 181 SNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFD 240
Query: 232 TVDHNHAMMSLKYMLLSKIMLNTPEDVNQILS---------------------------- 263
+VD A+ SLKYMLL KIML +DVNQ++S
Sbjct: 241 SVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMKSVAEASHKRSLA 300
Query: 264 -----------ELEDDTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELA 312
EL +D IV+AH+GTLYD MLEQNLCRIIEPYSRV+V +A+SI+L
Sbjct: 301 DFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHVAESIQLPMPQ 360
Query: 313 VEKKLSQMILDKKFHGILDQGEKVLIVFEGAEIDKTYEKALETITSMGKVIDTLYQKAKK 372
VEKKLSQMILDKKF GILDQGE VLIVFE +DKTYE+ LETI SMGKV+DTLYQKAKK
Sbjct: 361 VEKKLSQMILDKKFSGILDQGEGVLIVFEETPVDKTYERVLETIQSMGKVVDTLYQKAKK 420
Query: 373 LT 374
L+
Sbjct: 421 LS 422
>sp|F1LMZ8|PSD11_RAT 26S proteasome non-ATPase regulatory subunit 11 OS=Rattus
norvegicus GN=Psmd11 PE=2 SV=2
Length = 422
Score = 476 bits (1225), Expect = e-133, Method: Compositional matrix adjust.
Identities = 236/387 (60%), Positives = 286/387 (73%), Gaps = 39/387 (10%)
Query: 27 EENHDEEVKAKEQNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDF 86
+EN +E V+ KEQ+IL+LG + G+A EL L+K RPFL+ ISKAKAA+LVRSL+D
Sbjct: 36 QENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDL 95
Query: 87 FLDLETRTGMEVALCKECIEWAKEERRTFLRQSLEARLIALYFDTGEYTEALKLSSSLLK 146
FLD+E TG EV LC ECIEWAK E+RTFLRQ+LEARL++LYFDT Y EAL L S LL+
Sbjct: 96 FLDMEAATGQEVELCLECIEWAKSEKRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLR 155
Query: 147 ELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALDLQSG 206
ELKK+DDK LLVEV LLESKTYHALSNL +RA+LTSARTTAN+IYCPPK+QA LD+QSG
Sbjct: 156 ELKKMDDKALLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKLQATLDMQSG 215
Query: 207 ILHAADEQDFKTAFSYFYEAFEGFSTVDHNHAMMSLKYMLLSKIMLNTPEDVNQILS--- 263
I+HAA+E+D+KTA+SYFYEAFEG+ ++D A+ SLKYMLL KIMLNTPEDV ++S
Sbjct: 216 IIHAAEEKDWKTAYSYFYEAFEGYDSIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKL 275
Query: 264 ------------------------------------ELEDDTIVKAHIGTLYDNMLEQNL 287
EL DD I+ H+ LYDN+LEQNL
Sbjct: 276 ALRYAGRQTEALKCVAQASKNRSLADFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNL 335
Query: 288 CRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFEGAEIDK 347
R+IEP+SRV++ I+ IKL + VE+KLSQMILDKKFHGILDQGE VLI+F+ +DK
Sbjct: 336 IRVIEPFSRVQIEHISSLIKLSKADVERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDK 395
Query: 348 TYEKALETITSMGKVIDTLYQKAKKLT 374
TYE ALETI +M KV+D+LY KAKKLT
Sbjct: 396 TYEAALETIQNMSKVVDSLYNKAKKLT 422
>sp|O00231|PSD11_HUMAN 26S proteasome non-ATPase regulatory subunit 11 OS=Homo sapiens
GN=PSMD11 PE=1 SV=3
Length = 422
Score = 476 bits (1225), Expect = e-133, Method: Compositional matrix adjust.
Identities = 236/387 (60%), Positives = 286/387 (73%), Gaps = 39/387 (10%)
Query: 27 EENHDEEVKAKEQNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDF 86
+EN +E V+ KEQ+IL+LG + G+A EL L+K RPFL+ ISKAKAA+LVRSL+D
Sbjct: 36 QENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDL 95
Query: 87 FLDLETRTGMEVALCKECIEWAKEERRTFLRQSLEARLIALYFDTGEYTEALKLSSSLLK 146
FLD+E TG EV LC ECIEWAK E+RTFLRQ+LEARL++LYFDT Y EAL L S LL+
Sbjct: 96 FLDMEAATGQEVELCLECIEWAKSEKRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLR 155
Query: 147 ELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALDLQSG 206
ELKK+DDK LLVEV LLESKTYHALSNL +RA+LTSARTTAN+IYCPPK+QA LD+QSG
Sbjct: 156 ELKKMDDKALLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKLQATLDMQSG 215
Query: 207 ILHAADEQDFKTAFSYFYEAFEGFSTVDHNHAMMSLKYMLLSKIMLNTPEDVNQILS--- 263
I+HAA+E+D+KTA+SYFYEAFEG+ ++D A+ SLKYMLL KIMLNTPEDV ++S
Sbjct: 216 IIHAAEEKDWKTAYSYFYEAFEGYDSIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKL 275
Query: 264 ------------------------------------ELEDDTIVKAHIGTLYDNMLEQNL 287
EL DD I+ H+ LYDN+LEQNL
Sbjct: 276 ALRYAGRQTEALKCVAQASKNRSLADFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNL 335
Query: 288 CRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFEGAEIDK 347
R+IEP+SRV++ I+ IKL + VE+KLSQMILDKKFHGILDQGE VLI+F+ +DK
Sbjct: 336 IRVIEPFSRVQIEHISSLIKLSKADVERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDK 395
Query: 348 TYEKALETITSMGKVIDTLYQKAKKLT 374
TYE ALETI +M KV+D+LY KAKKLT
Sbjct: 396 TYEAALETIQNMSKVVDSLYNKAKKLT 422
>sp|Q2KI42|PSD11_BOVIN 26S proteasome non-ATPase regulatory subunit 11 OS=Bos taurus
GN=PSMD11 PE=2 SV=3
Length = 422
Score = 476 bits (1225), Expect = e-133, Method: Compositional matrix adjust.
Identities = 236/387 (60%), Positives = 286/387 (73%), Gaps = 39/387 (10%)
Query: 27 EENHDEEVKAKEQNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDF 86
+EN +E V+ KEQ+IL+LG + G+A EL L+K RPFL+ ISKAKAA+LVRSL+D
Sbjct: 36 QENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDL 95
Query: 87 FLDLETRTGMEVALCKECIEWAKEERRTFLRQSLEARLIALYFDTGEYTEALKLSSSLLK 146
FLD+E TG EV LC ECIEWAK E+RTFLRQ+LEARL++LYFDT Y EAL L S LL+
Sbjct: 96 FLDMEAATGQEVELCLECIEWAKSEKRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLR 155
Query: 147 ELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALDLQSG 206
ELKK+DDK LLVEV LLESKTYHALSNL +RA+LTSARTTAN+IYCPPK+QA LD+QSG
Sbjct: 156 ELKKMDDKALLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKLQATLDMQSG 215
Query: 207 ILHAADEQDFKTAFSYFYEAFEGFSTVDHNHAMMSLKYMLLSKIMLNTPEDVNQILS--- 263
I+HAA+E+D+KTA+SYFYEAFEG+ ++D A+ SLKYMLL KIMLNTPEDV ++S
Sbjct: 216 IIHAAEEKDWKTAYSYFYEAFEGYDSIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKL 275
Query: 264 ------------------------------------ELEDDTIVKAHIGTLYDNMLEQNL 287
EL DD I+ H+ LYDN+LEQNL
Sbjct: 276 ALRYAGRQTEALKCVAQASKNRSLADFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNL 335
Query: 288 CRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFEGAEIDK 347
R+IEP+SRV++ I+ IKL + VE+KLSQMILDKKFHGILDQGE VLI+F+ +DK
Sbjct: 336 IRVIEPFSRVQIEHISSLIKLSKADVERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDK 395
Query: 348 TYEKALETITSMGKVIDTLYQKAKKLT 374
TYE ALETI +M KV+D+LY KAKKLT
Sbjct: 396 TYEAALETIQNMSKVVDSLYNKAKKLT 422
>sp|Q8BG32|PSD11_MOUSE 26S proteasome non-ATPase regulatory subunit 11 OS=Mus musculus
GN=Psmd11 PE=1 SV=3
Length = 422
Score = 476 bits (1224), Expect = e-133, Method: Compositional matrix adjust.
Identities = 236/387 (60%), Positives = 286/387 (73%), Gaps = 39/387 (10%)
Query: 27 EENHDEEVKAKEQNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDF 86
+EN +E V+ KEQ+IL+LG + G+A EL L+K RPFL+ ISKAKAA+LVRSL+D
Sbjct: 36 QENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDL 95
Query: 87 FLDLETRTGMEVALCKECIEWAKEERRTFLRQSLEARLIALYFDTGEYTEALKLSSSLLK 146
FLD+E TG EV LC ECIEWAK E+RTFLRQ+LEARL++LYFDT Y EAL L S LL+
Sbjct: 96 FLDMEAATGQEVELCLECIEWAKSEKRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLR 155
Query: 147 ELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALDLQSG 206
ELKK+DDK LLVEV LLESKTYHALSNL +RA+LTSARTTAN+IYCPPK+QA LD+QSG
Sbjct: 156 ELKKMDDKALLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKLQATLDMQSG 215
Query: 207 ILHAADEQDFKTAFSYFYEAFEGFSTVDHNHAMMSLKYMLLSKIMLNTPEDVNQILS--- 263
I+HAA+E+D+KTA+SYFYEAFEG+ ++D A+ SLKYMLL KIMLNTPEDV ++S
Sbjct: 216 IIHAAEEKDWKTAYSYFYEAFEGYDSIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKL 275
Query: 264 ------------------------------------ELEDDTIVKAHIGTLYDNMLEQNL 287
EL DD I+ H+ LYDN+LEQNL
Sbjct: 276 ALRYAGRQTEALKCVAQASKNRSLADFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNL 335
Query: 288 CRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFEGAEIDK 347
R+IEP+SRV++ I+ IKL + VE+KLSQMILDKKFHGILDQGE VLI+F+ +DK
Sbjct: 336 IRVIEPFSRVQIEHISSLIKLSKADVERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDK 395
Query: 348 TYEKALETITSMGKVIDTLYQKAKKLT 374
TYE ALETI +M KV+D+LY KAKKLT
Sbjct: 396 TYEAALETIQNMSKVVDSLYSKAKKLT 422
>sp|F6XBL2|PSD11_XENTR 26S proteasome non-ATPase regulatory subunit 11 OS=Xenopus
tropicalis GN=psmd11 PE=3 SV=2
Length = 422
Score = 473 bits (1217), Expect = e-132, Method: Compositional matrix adjust.
Identities = 240/412 (58%), Positives = 296/412 (71%), Gaps = 40/412 (9%)
Query: 2 AGAMMFERSASQISITGNSYKTGYEEENHDEEVKAKEQNILQLGEKYKQEGKAIELAELI 61
A M+ A+ I I + K +E + +E ++ KEQ+IL+LG + G+A EL L+
Sbjct: 12 AQEMLVSDRAASIDILQSIVKRDIQESD-EEALRVKEQSILELGGLLAKTGQAAELGGLL 70
Query: 62 KKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQSLE 121
K RPFL+ ISKAKAA+LVRSL+D FLD+E TG EV LC ECIEWAK E+RTFLRQ+LE
Sbjct: 71 KYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKAEKRTFLRQALE 130
Query: 122 ARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASL 181
ARL++LYFDT Y EAL+L S LL+ELKK+DDK LLVEV LLESKTYHALSNL +RA+L
Sbjct: 131 ARLVSLYFDTKRYQEALQLGSQLLRELKKMDDKALLVEVQLLESKTYHALSNLPKARAAL 190
Query: 182 TSARTTANSIYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEGFSTVDHNHAMMS 241
TSARTTAN+IYCPPK+QAALD+QSGI+HAA+E+D+KTA+SYFYEAFEG ++D A+ +
Sbjct: 191 TSARTTANAIYCPPKLQAALDMQSGIIHAAEEKDWKTAYSYFYEAFEGNDSIDSPKAITA 250
Query: 242 LKYMLLSKIMLNTPEDVNQILS-------------------------------------- 263
LKYMLL KIMLNTPEDV ++S
Sbjct: 251 LKYMLLCKIMLNTPEDVQALVSGKLALRYAGRQTEALKCVAQASKNRSLANFEKALTDYK 310
Query: 264 -ELEDDTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMIL 322
EL DD I+ H+ LYDN+LEQNL R+IEP+SRV++ I+ IKL + VE+KLSQMIL
Sbjct: 311 AELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIDHISSLIKLPKPEVERKLSQMIL 370
Query: 323 DKKFHGILDQGEKVLIVFEGAEIDKTYEKALETITSMGKVIDTLYQKAKKLT 374
DKKFHGILDQGE VLI+F+ +DKTYE ALETI +M KV+D+LY KAKKLT
Sbjct: 371 DKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLYNKAKKLT 422
>sp|F1QGH9|PS11B_DANRE 26S proteasome non-ATPase regulatory subunit 11B OS=Danio rerio
GN=psmd11b PE=2 SV=1
Length = 422
Score = 471 bits (1211), Expect = e-132, Method: Compositional matrix adjust.
Identities = 241/419 (57%), Positives = 298/419 (71%), Gaps = 46/419 (10%)
Query: 2 AGAMMFERSASQISITGNSYKTGYE-------EENHDEEVKAKEQNILQLGEKYKQEGKA 54
A + F+R+ S IS N+ + +E+ +E V+ KEQ+IL+LG + G+A
Sbjct: 4 AAVVEFQRAQSLISTDRNASIDIFHSIVRRDVQEDDEEAVRVKEQSILELGSLLAKTGQA 63
Query: 55 IELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRT 114
EL L+K RPFL ISKAKAA+LVRSL+D FLD+E TG EV LC ECIEWAK E+RT
Sbjct: 64 AELGGLLKFVRPFLISISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKAEKRT 123
Query: 115 FLRQSLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNL 174
FLRQ+LEARLI+LYFDT Y EAL+L S LL+ELKK+DDK LLVEV LLESKTYHALSNL
Sbjct: 124 FLRQALEARLISLYFDTKRYQEALQLESQLLQELKKMDDKALLVEVQLLESKTYHALSNL 183
Query: 175 STSRASLTSARTTANSIYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEGFSTVD 234
+RA+LTSARTTAN+IYCPPK+QAALD+QSGI+HAA+E+D+KTA+SYF+EAFEG+ ++D
Sbjct: 184 PKARAALTSARTTANAIYCPPKLQAALDMQSGIIHAAEEKDWKTAYSYFFEAFEGYDSID 243
Query: 235 HNHAMMSLKYMLLSKIMLNTPEDVNQILS------------------------------- 263
A+ +LKYMLL KIML+ PE+V ++S
Sbjct: 244 SPRAVTALKYMLLCKIMLSLPEEVQALISGKLGLRYAGRQTDALKCIAQASKNRSLADFE 303
Query: 264 --------ELEDDTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEK 315
EL DD I+ H+ LYDN+LEQNL R+IEP+SRV++ IA IKL + VE+
Sbjct: 304 KALTEYTKELRDDPIINTHLAKLYDNLLEQNLIRVIEPFSRVQITHIAGLIKLSKNDVER 363
Query: 316 KLSQMILDKKFHGILDQGEKVLIVFEGAEIDKTYEKALETITSMGKVIDTLYQKAKKLT 374
KLSQMILDKKFHGILDQGE VLI+FE +DKTYE ALETI +M KV+D+LY KAKKLT
Sbjct: 364 KLSQMILDKKFHGILDQGEDVLIIFEEPPVDKTYEAALETIQNMSKVVDSLYNKAKKLT 422
>sp|F6P3G4|PS11A_DANRE 26S proteasome non-ATPase regulatory subunit 11A OS=Danio rerio
GN=psmd11a PE=2 SV=1
Length = 421
Score = 468 bits (1205), Expect = e-131, Method: Compositional matrix adjust.
Identities = 239/420 (56%), Positives = 303/420 (72%), Gaps = 48/420 (11%)
Query: 2 AGAMMFERSASQISITGNS--------YKTGYEEENHDEEVKAKEQNILQLGEKYKQEGK 53
A A+ F+R+ S +S N+ K ++++ +E V+ KEQ+IL+LG + G+
Sbjct: 3 ATAVEFQRAQSLLSTDRNASIDILHAIVKRDVQDDD-EEAVRVKEQSILELGGLLAKTGQ 61
Query: 54 AIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERR 113
A EL L+K RPFL+ ISKAKAA+LVRSL+D FLD+E TG EV LC ECIEWAK E+R
Sbjct: 62 AAELGGLLKYVRPFLNSISKAKAARLVRSLLDMFLDMEAATGQEVELCLECIEWAKSEKR 121
Query: 114 TFLRQSLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSN 173
TFLRQ+LEARL++LYFDT Y EAL+L S LL+ELKK+DDK LLVE+ LLESKTYHALSN
Sbjct: 122 TFLRQALEARLVSLYFDTKRYQEALQLGSQLLQELKKMDDKALLVELQLLESKTYHALSN 181
Query: 174 LSTSRASLTSARTTANSIYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEGFSTV 233
L +RA+LTSARTTAN+IYCPPK+QAALD+QSGI+HAA+E+D+KTA+SYFYEAFEG+ ++
Sbjct: 182 LPKARAALTSARTTANAIYCPPKLQAALDMQSGIIHAAEEKDWKTAYSYFYEAFEGYDSI 241
Query: 234 DHNHAMMSLKYMLLSKIMLNTPEDVNQILS------------------------------ 263
D A+ +LKYMLL KIMLN+PEDV ++S
Sbjct: 242 DSPRAITALKYMLLCKIMLNSPEDVQSLISGKLALRYAGRQTEALKCVAQASKNRSLADF 301
Query: 264 ---------ELEDDTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVE 314
EL DD I+ H+ LYDN+LEQNL R+IEP+SRV++ I++ IKL + VE
Sbjct: 302 EKALTEYKAELRDDPIISTHLTKLYDNLLEQNLIRVIEPFSRVQIEHISELIKLSKGDVE 361
Query: 315 KKLSQMILDKKFHGILDQGEKVLIVFEGAEIDKTYEKALETITSMGKVIDTLYQKAKKLT 374
+KLSQMILD+KFHGILDQGE VLIVF+ +DKTYE +LETI +M KV+D+LY KAKKLT
Sbjct: 362 RKLSQMILDQKFHGILDQGEGVLIVFDEPPVDKTYEASLETIQNMSKVVDSLYNKAKKLT 421
>sp|Q20938|PS11A_CAEEL Probable 26S proteasome regulatory subunit rpn-6.1
OS=Caenorhabditis elegans GN=rpn-6.1 PE=2 SV=2
Length = 438
Score = 383 bits (983), Expect = e-105, Method: Compositional matrix adjust.
Identities = 200/385 (51%), Positives = 264/385 (68%), Gaps = 41/385 (10%)
Query: 31 DEEVKAKEQNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDL 90
D+++K KE +I++LG Q + EL +I++TRPFL + KAKAAKLVR LVD L +
Sbjct: 54 DDDIKKKEDSIMELGNILAQNKQTEELRNMIEQTRPFLVSLGKAKAAKLVRDLVDLCLKI 113
Query: 91 ETRTG-MEVALCKECIEWAKEERRTFLRQSLEARLIALYFDTGEYTEALKLSSSLLKELK 149
+ + G ++V L KECI+WA E+ RTFLRQ+L ARL+ LY D YT+AL L++ L++ELK
Sbjct: 114 DDQDGDIKVGLVKECIQWATEQNRTFLRQTLTARLVRLYNDLQRYTQALPLAADLIRELK 173
Query: 150 KLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALDLQSGILH 209
K+DDK++LVEV L ESK Y+ LSN+ +RASLT ARTTAN+IY P+MQAALDLQSGILH
Sbjct: 174 KVDDKDVLVEVELEESKAYYNLSNIGRARASLTGARTTANAIYVNPRMQAALDLQSGILH 233
Query: 210 AADEQDFKTAFSYFYEAFEGFSTVDHN-HAMMSLKYMLLSKIMLNTPEDVNQILS----- 263
AADE+DFKTAFSYFYEAFEG+ +VD A+ +LKYMLL K+ML+ P++VN +LS
Sbjct: 234 AADEKDFKTAFSYFYEAFEGYDSVDEKVSALTALKYMLLCKVMLDLPDEVNSLLSAKLAL 293
Query: 264 ----------------------------------ELEDDTIVKAHIGTLYDNMLEQNLCR 289
EL+ D +V+ H +L + MLE++LCR
Sbjct: 294 KYNGSDLDAMKAIAAAAQKRSLKDFQVAFGSFPQELQMDPVVRKHFHSLSERMLEKDLCR 353
Query: 290 IIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFEGAEIDKTY 349
IIEPYS V++ +A+ I +D VEKKLSQMILD+K G LDQGE +LIVFE A D+ Y
Sbjct: 354 IIEPYSFVQIEHVAQQIGIDRSKVEKKLSQMILDQKLSGSLDQGEGMLIVFEIAVPDEAY 413
Query: 350 EKALETITSMGKVIDTLYQKAKKLT 374
+ AL+TI +MG+V+D LY A K+
Sbjct: 414 QTALDTIHAMGEVVDALYSNASKIN 438
>sp|Q9P7S2|RPN6_SCHPO Probable 26S proteasome regulatory subunit rpn6
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpn6 PE=3 SV=1
Length = 421
Score = 362 bits (928), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 183/377 (48%), Positives = 259/377 (68%), Gaps = 42/377 (11%)
Query: 31 DEEV-KAKEQNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLD 89
DE+V +EQ + L + Y +E + +LA+L++++RP ++ SKAK+AK+VR+L+D F
Sbjct: 37 DEKVANEQEQALTNLSDLYVRENRHNDLAQLVQQSRPLMANFSKAKSAKIVRTLIDKFSG 96
Query: 90 LETRTGMEVALCKECIEWAKEERRTFLRQSLEARLIALYFDTGEYTEALKLSSSLLKELK 149
+ +++ + +CI+WA +E+RTFLRQ+LE +LI+LY+D YT+A+ L ++LL ELK
Sbjct: 97 EKKSLPLQIEVANDCIKWAIKEKRTFLRQALETKLISLYYDNSSYTDAINLINTLLSELK 156
Query: 150 KLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALDLQSGILH 209
++DDK LL EV LLESK YHA+ N+ +RASLT+A+T+AN++YCPP +Q LDLQSGILH
Sbjct: 157 RMDDKMLLTEVHLLESKVYHAIRNIPKARASLTAAKTSANAVYCPPMLQGNLDLQSGILH 216
Query: 210 AADEQDFKTAFSYFYEAFEGFSTVDHN-HAMMSLKYMLLSKIMLNTPEDVNQILS----- 263
AD+ DFKTA+SYFYEA+EGF+++D + A+ SLKYMLLS+IMLN+ +V +L+
Sbjct: 217 -ADDMDFKTAYSYFYEAYEGFTSLDDDKKALSSLKYMLLSQIMLNSVSEVKSLLTGKHAI 275
Query: 264 ----------------------------------ELEDDTIVKAHIGTLYDNMLEQNLCR 289
EL D I+++H+ +LYDN+LEQNL R
Sbjct: 276 RYAGRDIEAMRAIAQAHENRSLADFEKALQDYKPELASDPIIRSHLSSLYDNLLEQNLLR 335
Query: 290 IIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFEGAEIDKTY 349
++EP+SRVEV IA+ I L + VE KLSQMILDK F+GILDQG LIV++ + DKTY
Sbjct: 336 VVEPFSRVEVSHIAELIGLSTVQVEGKLSQMILDKIFYGILDQGSGCLIVYDEPQQDKTY 395
Query: 350 EKALETITSMGKVIDTL 366
E ALE I +MG V+D L
Sbjct: 396 EAALEVIKNMGTVVDLL 412
>sp|Q9LP45|PSD11_ARATH 26S proteasome non-ATPase regulatory subunit 11 OS=Arabidopsis
thaliana GN=RPN6A PE=1 SV=1
Length = 419
Score = 329 bits (844), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 183/392 (46%), Positives = 250/392 (63%), Gaps = 40/392 (10%)
Query: 21 YKTGYEEENHDEEVKAKEQNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLV 80
Y+ + + E ++ KEQ I L ++ +E + +L +L+ K RPF S I KAK AK+V
Sbjct: 27 YQVLEDPSSSPEAIRIKEQAITNLCDRLTEEKRGEDLRKLLTKLRPFFSLIPKAKTAKIV 86
Query: 81 RSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQSLEARLIALYFDTGEYTEALKL 140
R ++D + T +++ LCKE +EW + E+RTFLRQ +EARL AL + EY EAL L
Sbjct: 87 RGIIDAVAKIPGTTDLQITLCKEMVEWTRAEKRTFLRQRVEARLAALLMENKEYVEALAL 146
Query: 141 SSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAA 200
S+L+KE+++LDDK LLV++ LLESK + +L NL ++A+LT+ART AN+IY PP Q
Sbjct: 147 LSTLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGT 206
Query: 201 LDLQSGILHAADEQDFKTAFSYFYEAFEGFSTVDHNHAMMSLKYMLLSKIMLNTPEDVNQ 260
+DLQSGILH A+E+D+KT +SYF+EAFE F+ + A+ SLKYMLL KIM++ +DV
Sbjct: 207 IDLQSGILH-AEEKDYKTGYSYFFEAFESFNALGDPRAVFSLKYMLLCKIMVSQADDVAG 265
Query: 261 ILS---------------------------------------ELEDDTIVKAHIGTLYDN 281
I+S +LEDD IV H+ +LYD
Sbjct: 266 IISSKAGLQYVGPDLDAMKAVADAHSKRSLKLFENALRDYKAQLEDDPIVHRHLSSLYDT 325
Query: 282 MLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFE 341
+LEQNLCR+IEP+SRVE+ IA+ I L VEKKLSQMILDKKF G LDQG LI+FE
Sbjct: 326 LLEQNLCRLIEPFSRVEIAHIAELIGLPLDHVEKKLSQMILDKKFAGTLDQGAGCLIIFE 385
Query: 342 GAEIDKTYEKALETITSMGKVIDTLYQKAKKL 373
+ D Y LETI +MGKV+D+LY ++ K+
Sbjct: 386 DPKADAIYSATLETIANMGKVVDSLYVRSAKI 417
>sp|Q54UB5|PSD11_DICDI 26S proteasome non-ATPase regulatory subunit 11 OS=Dictyostelium
discoideum GN=psmD11 PE=2 SV=1
Length = 413
Score = 328 bits (841), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 170/378 (44%), Positives = 240/378 (63%), Gaps = 41/378 (10%)
Query: 37 KEQNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGM 96
KE+ IL+L + + + GK +L L++ RPF +ISK K K+VR+ +D F +
Sbjct: 37 KEEAILRLAKLFVKIGKGDQLPTLLRSVRPFFDKISKPKTDKIVRNFIDIFSTVPDNLTT 96
Query: 97 EVALCKECIEWAKEERRTFLRQSLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNL 156
+ KE I+W K+ R +LRQ LE +L L F+ +Y AL ++LL E+K+LDDK L
Sbjct: 97 LIEFVKENIQWCKDTNRIYLRQRLETKLFTLMFEAKDYANALSGLTTLLTEIKRLDDKPL 156
Query: 157 LVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALDLQSGILHAADEQDF 216
LVE+ L+ES+ HAL N+ +RA+LTSART AN+IYCPPK+QA +D+QSGILH ++E+D+
Sbjct: 157 LVEIQLVESRIQHALKNIPKARAALTSARTNANTIYCPPKLQAEIDMQSGILH-SEEKDY 215
Query: 217 KTAFSYFYEAFEGFSTVDHNHAMMSLKYMLLSKIMLNTPEDVNQILS------------- 263
KTAFSYF+E++E + +++ AM +LKYMLL KIM N +DV+ +++
Sbjct: 216 KTAFSYFFESYETYDSLEDPFAMKALKYMLLCKIMTNQTDDVHALVNGKIGLKYHNNRSI 275
Query: 264 ---------------------------ELEDDTIVKAHIGTLYDNMLEQNLCRIIEPYSR 296
+L DD I+ +H+ LY N+LEQNLCRIIEP+SR
Sbjct: 276 EAITQISKSHAKRSLHMFQEVTKEFSDQLSDDPIIHSHLTELYSNLLEQNLCRIIEPFSR 335
Query: 297 VEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFEGAEIDKTYEKALETI 356
VE+ IAK I L VE+KLS MILDKK++GILDQG LIVFE + DK + +LETI
Sbjct: 336 VEISHIAKLIDLPVDVVERKLSLMILDKKYNGILDQGTGTLIVFEEQKEDKLFNCSLETI 395
Query: 357 TSMGKVIDTLYQKAKKLT 374
++ +V+D LY+K KL+
Sbjct: 396 GALSRVVDLLYEKTNKLS 413
>sp|Q12377|RPN6_YEAST 26S proteasome regulatory subunit RPN6 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN6 PE=1 SV=3
Length = 434
Score = 293 bits (749), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 166/387 (42%), Positives = 230/387 (59%), Gaps = 45/387 (11%)
Query: 31 DEEVKAKEQNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDL 90
D+ +E +IL+LG+ Y G +L E I + ++ Q +K+K K++++L++ F +
Sbjct: 48 DKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQV 107
Query: 91 ETRTGMEVALCKECIEWAKEERRTFLRQSLEARLIALYFDTGEYTEALKLSSSLLKELKK 150
++ +C++ IE+AK E+R FL+ SL +L L++ +Y ++L L + LL+E KK
Sbjct: 108 PDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKK 167
Query: 151 LDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALDLQSGILHA 210
LDDK LV+V LLESK YH L NL+ S+ASLT+ART ANSIYCP + A LDL SGILH
Sbjct: 168 LDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHC 227
Query: 211 ADEQDFKTAFSYFYEAFEGFSTV-DHN---HAMMSLKYMLLSKIMLNTPEDVNQILS--- 263
D +D+KTAFSYF+E+FE + + HN A LKYMLLSKIMLN +DV IL+
Sbjct: 228 ED-KDYKTAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKY 286
Query: 264 -------------------------------------ELEDDTIVKAHIGTLYDNMLEQN 286
EL D + ++H LYD +LE N
Sbjct: 287 TKETYQSRGIDAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESN 346
Query: 287 LCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFEGAEID 346
LC+IIEP+ VE+ I+K I LD VE KLSQMILDK F+G+LDQG L V+E D
Sbjct: 347 LCKIIEPFECVEISHISKIIGLDTQQVEGKLSQMILDKIFYGVLDQGNGWLYVYETPNQD 406
Query: 347 KTYEKALETITSMGKVIDTLYQKAKKL 373
TY+ ALE + + KV+D L++KA L
Sbjct: 407 ATYDSALELVGQLNKVVDQLFEKASVL 433
>sp|A8X379|PS11B_CAEBR Probable 26S proteasome regulatory subunit rpn-6.2
OS=Caenorhabditis briggsae GN=rpn-6.2 PE=3 SV=1
Length = 411
Score = 262 bits (669), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 147/388 (37%), Positives = 225/388 (57%), Gaps = 44/388 (11%)
Query: 28 ENHDEEVKAKEQNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFF 87
++ + EVK E IL ++ +E + L+K + F + KA+A+KL+R +V+F
Sbjct: 21 KSSEAEVKRCEDLILSYAKQLAKEKDITGIRTLVKSIQNFYDLVGKARASKLIRDIVEFA 80
Query: 88 LDLET---RTGMEVALCKECIEWAKEERRTFLRQSLEARLIALYFDTGEYTEALKLSSSL 144
L +E ++ L K CIEWA +R FLR+SL+ARL+ LY D E+TE KL L
Sbjct: 81 LTVEQGKQEKEEKIDLLKNCIEWATSNKREFLRRSLQARLVRLYNDVREFTEGQKLGQEL 140
Query: 145 LKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALDLQ 204
KELKKL+D+ LL+EV + ESK L+NLS ++ +L +A+T++NS + P++QAA+D+Q
Sbjct: 141 SKELKKLEDRELLIEVSIEESKCAFNLNNLSKAKTALLTAKTSSNSAFASPQLQAAVDMQ 200
Query: 205 SGILHAADEQDFKTAFSYFYEAFEGFSTV-DHNHAMMSLKYMLLSKIMLNTPEDVNQILS 263
SG+L++A+E+D+KT+FSYFYEAFEG+ ++ D +A +LKYM+L KIMLN E + +LS
Sbjct: 201 SGVLYSAEERDYKTSFSYFYEAFEGYGSIGDKVNATGALKYMILCKIMLNETEQIPAMLS 260
Query: 264 ----------------------------------------ELEDDTIVKAHIGTLYDNML 283
EL +D +V H L ML
Sbjct: 261 TKEVLPYNTSPRIVAIRAMADAFRKRSLKDFMKALEEHKKELVEDKVVAVHSQNLERTML 320
Query: 284 EQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFEGA 343
E+ + R+IEPYS +E+ +IA+ I + EK +++MILDKK G +DQ ++++ A
Sbjct: 321 EKEISRVIEPYSEIELSYIARVIGMTVPPTEKAIARMILDKKLMGSIDQHGDTVVIYPKA 380
Query: 344 EIDKTYEKALETITSMGKVIDTLYQKAK 371
K + +AL TI + K +D Y + K
Sbjct: 381 GATKQFTRALTTIRELTKTVDVSYSRTK 408
>sp|P34481|PS11B_CAEEL Probable 26S proteasome regulatory subunit rpn-6.2
OS=Caenorhabditis elegans GN=rpn-6.2 PE=3 SV=3
Length = 416
Score = 253 bits (647), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 142/388 (36%), Positives = 223/388 (57%), Gaps = 49/388 (12%)
Query: 33 EVKAKEQNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLET 92
EVK E IL + +E + L++ R F + KA+A+KL+R +V+ L ++
Sbjct: 26 EVKRCEDLILSYSRQLAKEKDITGIRTLVESIRSFYDLVGKARASKLIRDIVEHALTIDQ 85
Query: 93 RTGM--------EVALCKECIEWAKEERRTFLRQSLEARLIALYFDTGEYTEALKLSSSL 144
G ++ L CI WA +R FLR+SL+ARLI LY D ++T A KL+ L
Sbjct: 86 GVGPALDHGKKEKIDLLTNCIGWATSNKREFLRRSLQARLIRLYNDIRDFTNAQKLAQDL 145
Query: 145 LKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALDLQ 204
KELKKL+D+ LL+EV + ESK+ L+NL+ ++ +L +A+T NS + P++QA++D+Q
Sbjct: 146 SKELKKLEDRELLIEVSVEESKSSFNLNNLAKAKTALLTAKTNTNSAFASPQLQASVDMQ 205
Query: 205 SGILHAADEQDFKTAFSYFYEAFEGFSTV-DHNHAMMSLKYMLLSKIMLNTPEDVNQILS 263
SG+L++A+E+D+KT+FSYFYEAFEGF+++ D +A +LKYM+L KIMLN E + +L+
Sbjct: 206 SGVLYSAEERDYKTSFSYFYEAFEGFASIGDKINATSALKYMILCKIMLNETEQLAGLLA 265
Query: 264 ----------------------------------------ELEDDTIVKAHIGTLYDNML 283
EL +D +V H L NML
Sbjct: 266 AKEIVAYQKSPRIIAIRSMADAFRKRSLKDFVKALAEHKIELVEDKVVAVHSQNLERNML 325
Query: 284 EQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFEGA 343
E+ + R+IEPYS +E+ +IA+ I + VE+ +++MILDKK G +DQ ++V+ A
Sbjct: 326 EKEISRVIEPYSEIELSYIARVIGMTVPPVERAIARMILDKKLMGSIDQHGDTVVVYPKA 385
Query: 344 EIDKTYEKALETITSMGKVIDTLYQKAK 371
+ + ++L+TI + K +D Y + K
Sbjct: 386 DAANQFTRSLKTIRELTKTVDVSYSRTK 413
>sp|P61203|CSN2_RAT COP9 signalosome complex subunit 2 OS=Rattus norvegicus GN=Cops2
PE=2 SV=1
Length = 443
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 79/336 (23%), Positives = 144/336 (42%), Gaps = 58/336 (17%)
Query: 53 KAIELAELIKKTRPFL----SQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKE----C 104
K E++ + + L S +++ + K + S++D+ T ++ L +E
Sbjct: 81 KLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYI-----STSKQMDLLQEFYETT 135
Query: 105 IEWAKEERRTFLRQSLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKN------LLV 158
+E K+ + L +L LY + EY + K+ L + + D ++ L+
Sbjct: 136 LEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDGEDDLKKGTQLL 195
Query: 159 EVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALDLQSGILHAADEQDFKT 218
E+ LE + Y A N +A + ++I P M + G +H E +F+
Sbjct: 196 EIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIREC-GGKMHLR-EGEFEK 253
Query: 219 AFSYFYEAFEGFSTVDHNHAMMSLKYMLLSKIML----------------NTPEDV---- 258
A + F+EAF+ + LKY++L+ +++ N PE +
Sbjct: 254 AHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTN 313
Query: 259 ------NQILSELE-----------DDTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGF 301
N ++E E DD ++ HI L N+ Q L ++I+PY+R+ + F
Sbjct: 314 LVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPF 373
Query: 302 IAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVL 337
I+K + +D VE L Q ILD HG +DQ ++L
Sbjct: 374 ISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLL 409
>sp|P61202|CSN2_MOUSE COP9 signalosome complex subunit 2 OS=Mus musculus GN=Cops2 PE=1
SV=1
Length = 443
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 79/336 (23%), Positives = 144/336 (42%), Gaps = 58/336 (17%)
Query: 53 KAIELAELIKKTRPFL----SQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKE----C 104
K E++ + + L S +++ + K + S++D+ T ++ L +E
Sbjct: 81 KLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYI-----STSKQMDLLQEFYETT 135
Query: 105 IEWAKEERRTFLRQSLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKN------LLV 158
+E K+ + L +L LY + EY + K+ L + + D ++ L+
Sbjct: 136 LEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDGEDDLKKGTQLL 195
Query: 159 EVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALDLQSGILHAADEQDFKT 218
E+ LE + Y A N +A + ++I P M + G +H E +F+
Sbjct: 196 EIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIREC-GGKMHLR-EGEFEK 253
Query: 219 AFSYFYEAFEGFSTVDHNHAMMSLKYMLLSKIML----------------NTPEDV---- 258
A + F+EAF+ + LKY++L+ +++ N PE +
Sbjct: 254 AHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTN 313
Query: 259 ------NQILSELE-----------DDTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGF 301
N ++E E DD ++ HI L N+ Q L ++I+PY+R+ + F
Sbjct: 314 LVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPF 373
Query: 302 IAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVL 337
I+K + +D VE L Q ILD HG +DQ ++L
Sbjct: 374 ISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLL 409
>sp|P61201|CSN2_HUMAN COP9 signalosome complex subunit 2 OS=Homo sapiens GN=COPS2 PE=1
SV=1
Length = 443
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 79/336 (23%), Positives = 144/336 (42%), Gaps = 58/336 (17%)
Query: 53 KAIELAELIKKTRPFL----SQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKE----C 104
K E++ + + L S +++ + K + S++D+ T ++ L +E
Sbjct: 81 KLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYI-----STSKQMDLLQEFYETT 135
Query: 105 IEWAKEERRTFLRQSLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKN------LLV 158
+E K+ + L +L LY + EY + K+ L + + D ++ L+
Sbjct: 136 LEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDGEDDLKKGTQLL 195
Query: 159 EVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALDLQSGILHAADEQDFKT 218
E+ LE + Y A N +A + ++I P M + G +H E +F+
Sbjct: 196 EIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIREC-GGKMHLR-EGEFEK 253
Query: 219 AFSYFYEAFEGFSTVDHNHAMMSLKYMLLSKIML----------------NTPEDV---- 258
A + F+EAF+ + LKY++L+ +++ N PE +
Sbjct: 254 AHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTN 313
Query: 259 ------NQILSELE-----------DDTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGF 301
N ++E E DD ++ HI L N+ Q L ++I+PY+R+ + F
Sbjct: 314 LVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPF 373
Query: 302 IAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVL 337
I+K + +D VE L Q ILD HG +DQ ++L
Sbjct: 374 ISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLL 409
>sp|Q6IR75|CSN2_XENLA COP9 signalosome complex subunit 2 (Fragment) OS=Xenopus laevis
GN=csn2 PE=2 SV=1
Length = 441
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 78/319 (24%), Positives = 137/319 (42%), Gaps = 60/319 (18%)
Query: 69 SQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEW-------AKEERRTFLRQSLE 121
S +++ + K + S++D+ T ++ L +E E AK +R F
Sbjct: 99 SAVTRNYSEKSINSILDYI-----STSKQMDLLQEFYETTLDALKDAKNDRLWF---KTN 150
Query: 122 ARLIALYFDTGEYTEALKLSSSLLKELKKLDDKN------LLVEVLLLESKTYHALSNLS 175
+L LY + EY + K+ L + + D ++ L+E+ LE + Y A N
Sbjct: 151 TKLGKLYLEREEYGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNK 210
Query: 176 TSRASLTSARTTANSIYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEGFSTVDH 235
+A + ++I P M + G +H E +F+ A + F+EAF+ +
Sbjct: 211 KLKALYEQSLHIKSAIPHPLIMGVIREC-GGKMHLR-EGEFEKAHTDFFEAFKNYDESGS 268
Query: 236 NHAMMSLKYMLLSKIML----------------NTPEDV----------NQILSELE--- 266
LKY++L+ +++ N PE + N ++E E
Sbjct: 269 PRRTTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKIL 328
Query: 267 --------DDTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLS 318
DD ++ HI L N+ Q L ++I+PY+R+ + FI+K + +D VE L
Sbjct: 329 KTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLV 388
Query: 319 QMILDKKFHGILDQGEKVL 337
Q ILD HG +DQ ++L
Sbjct: 389 QCILDNTIHGRIDQVNQLL 407
>sp|Q8W207|CSN2_ARATH COP9 signalosome complex subunit 2 OS=Arabidopsis thaliana GN=CSN2
PE=1 SV=1
Length = 439
Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 83/366 (22%), Positives = 158/366 (43%), Gaps = 67/366 (18%)
Query: 26 EEENHDEEVKAKEQNILQLGEKYKQEGKAIELAELIKKTRPFL-SQISKAKAAKLVRSLV 84
E E D KA +Q + + Y + GK E+ E + ++ S +++ + K + +++
Sbjct: 55 EPEKADWGFKALKQTV----KIYYRLGKYKEMMEAYTEMLTYIKSAVTRNYSEKCINNIM 110
Query: 85 DFFLDLETRTGMEVALCKE-------CIEWAKEERRTFLRQSLEARLIALYFDTGEYTEA 137
DF + L +E +E AK ER F +L ++FD GEY
Sbjct: 111 DF---VSGSASQNTGLLQEFYQTTLKALEEAKNERLWF---KTNLKLCNIWFDIGEYRRM 164
Query: 138 LKLSSSLLKELKKLDDKN------LLVEVLLLESKTYHALSNLSTSRASLTSARTTANSI 191
K+ L K +K D + L+EV +E + Y + + A ++I
Sbjct: 165 TKILKELHKSCQKEDGTDDQKKGSQLLEVYAIEIQIYTETKDNKKLKQLYHKALAIKSAI 224
Query: 192 YCP-PKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEGFSTVDHNHAMMSLKYMLLSKI 250
P P++ + G +H A+ Q ++ A + F+EAF+ + + + LKY++L+ +
Sbjct: 225 --PHPRIMGIIRECGGKMHMAERQ-WEEAATDFFEAFKNYDEAGNQRRIQCLKYLVLANM 281
Query: 251 ML----------------NTPE-----------DVNQILSELE-----------DDTIVK 272
++ N PE N+I+ E E DD ++
Sbjct: 282 LMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEII-EFERILKSNRRTIMDDPFIR 340
Query: 273 AHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQ 332
++ L + Q L ++I+PY+++ + FI+K + + E V + L +ILD + G +D+
Sbjct: 341 NYMEDLLKKVRTQVLLKLIKPYTKIGIPFISKELNVPETDVTELLVSLILDSRIDGHIDE 400
Query: 333 GEKVLI 338
+ L+
Sbjct: 401 MNRYLL 406
>sp|Q6IQT4|CSN2_DANRE COP9 signalosome complex subunit 2 OS=Danio rerio GN=cops2 PE=2
SV=1
Length = 443
Score = 68.6 bits (166), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 77/336 (22%), Positives = 144/336 (42%), Gaps = 58/336 (17%)
Query: 53 KAIELAELIKKTRPFL----SQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKE----C 104
K E++ + + L S +++ + K + S++D+ T ++ L +E
Sbjct: 81 KLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYI-----STSKQMDLLQEFYETT 135
Query: 105 IEWAKEERRTFLRQSLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKN------LLV 158
+E K+ + L +L LY + E+ + K+ L + + D ++ L+
Sbjct: 136 LEALKDAKNDRLWFKTNTKLGKLYLEREEFGKLQKILRQLHQSCQTDDGEDDLKKGTQLL 195
Query: 159 EVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALDLQSGILHAADEQDFKT 218
E+ LE + Y A N +A + ++I P M + G +H E +F+
Sbjct: 196 EIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIREC-GGKMHLR-EGEFEK 253
Query: 219 AFSYFYEAFEGFSTVDHNHAMMSLKYMLLSKIML----------------NTPEDV---- 258
A + F+EAF+ + LKY++L+ +++ N PE +
Sbjct: 254 AHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTN 313
Query: 259 ------NQILSELE-----------DDTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGF 301
N ++E E DD ++ HI L N+ Q L ++I+PY+R+ + F
Sbjct: 314 LVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPF 373
Query: 302 IAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVL 337
I+K + +D VE L Q ILD +G +DQ ++L
Sbjct: 374 ISKELNIDVADVESLLVQCILDNTINGRIDQVNQLL 409
>sp|Q54HL6|CSN2_DICDI COP9 signalosome complex subunit 2 OS=Dictyostelium discoideum
GN=csn2 PE=1 SV=1
Length = 449
Score = 65.1 bits (157), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 71/299 (23%), Positives = 132/299 (44%), Gaps = 53/299 (17%)
Query: 113 RTFLRQSLEARLIALYFDTGEYTEALKLSSSLLKELK---KLDDK---NLLVEVLLLESK 166
R + R +L +L L F+ EY K+ L K + DD+ + LV++ LE +
Sbjct: 150 RVWFRTNL--KLAKLLFEKAEYGRLAKILRDLHKSCELEDGTDDQKKGSQLVDIYALEIQ 207
Query: 167 TYHALSNLSTSRASLTSARTTANSIYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEA 226
Y N + A ++I P++ + G +H A E++++ A + F+EA
Sbjct: 208 MYTETKNNKKLKDLYKKALEIKSAI-PHPRIMGIIRECGGKMHMA-EKEWEKAHTDFFEA 265
Query: 227 FEGFSTVDHNHAMMSLKYMLLSKIML----------------NTPE-------------- 256
F+ + ++ + LKY++L+ +++ N P+
Sbjct: 266 FKNYDEAGNSRRIQCLKYLVLACMLMLSTINPFDSTEAKPYKNDPDILAMTNLVMAYEKN 325
Query: 257 DV---NQILSE----LEDDTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLD 309
D+ +IL + + DD ++ +I L N+ Q L ++++PY+R+ + FI+K + +
Sbjct: 326 DIYAFEKILKDNRKTIMDDPFIRMYIEDLLRNIRTQVLLKLLKPYTRIRISFISKELNIP 385
Query: 310 ELAVEKKLSQMILDKKFHGILDQGEKVLIVFEGAEIDKTYEKALETITSMGKVIDTLYQ 368
VE L +ILD K G +DQ V + E+D A TS+ K + + Q
Sbjct: 386 SSDVESLLVSLILDNKIRGSIDQ------VNQQLELDTAKSSAYWKYTSIHKWANQIGQ 438
>sp|Q94899|CSN2_DROME COP9 signalosome complex subunit 2 OS=Drosophila melanogaster
GN=alien PE=1 SV=2
Length = 444
Score = 65.1 bits (157), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 75/319 (23%), Positives = 131/319 (41%), Gaps = 60/319 (18%)
Query: 69 SQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEW-------AKEERRTFLRQSLE 121
S +++ + K + S++D+ T +AL + E AK +R F
Sbjct: 102 SAVTRNHSEKSINSILDYI-----STSKNMALLQNFYETTLDALRDAKNDRLWF---KTN 153
Query: 122 ARLIALYFDTGEYTEALKLSSSLLKELKKLDDKN------LLVEVLLLESKTYHALSNLS 175
+L LYFD ++T+ K+ L + + D ++ L+E+ LE + Y N
Sbjct: 154 TKLGKLYFDRSDFTKLQKILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTVQKNNK 213
Query: 176 TSRASLTSARTTANSIYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEGFSTVDH 235
+A + ++I P M + G +H E +F+ A + F+EAF+ +
Sbjct: 214 KLKALYEQSLHIKSAIPHPLIMGVIREC-GGKMHLR-EGEFEKAHTDFFEAFKNYDESGS 271
Query: 236 NHAMMSLKYMLLSKIML----------------NTPE--------------DVN------ 259
LKY++L+ +++ N PE D+N
Sbjct: 272 PRRTTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVNSYQNNDINEFETIL 331
Query: 260 -QILSELEDDTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLS 318
Q S + D ++ HI L N+ Q L ++I PY + + FIA ++ ++ VE L
Sbjct: 332 RQHRSNIMADQFIREHIEDLLRNIRTQVLIKLIRPYKNIAIPFIANALNIEPAEVESLLV 391
Query: 319 QMILDKKFHGILDQGEKVL 337
ILD G +DQ +VL
Sbjct: 392 SCILDDTIKGRIDQVNQVL 410
>sp|Q7SI58|CSN2_NEUCR COP9 signalosome complex subunit 2 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=csn-2 PE=1 SV=1
Length = 490
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 97/216 (44%), Gaps = 42/216 (19%)
Query: 195 PKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEGFSTVDHNHAMMSLKYMLLSKIML-- 252
PK+Q + G +H + E+++K A S F+EAF + + LKY+LL+ +++
Sbjct: 234 PKIQGVIRECGGKMHMS-EENWKEAQSDFFEAFRNYDEAGDLRRIQVLKYLLLTTMLMKS 292
Query: 253 --------------NTP--------------------EDVNQILSELEDDTIVKAHIGTL 278
N P EDV Q ++L D + +I +
Sbjct: 293 DINPFDSQEMKPYRNDPRIFAMTELVDAYQRDDIYRYEDVLQKNTDLLADPFIAENIDEV 352
Query: 279 YDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLI 338
NM + + ++I PY+R+ + ++A+ +++ E V LS +I+D + G +D+ + VL
Sbjct: 353 TRNMRTKGVVKLIAPYTRMRISWLAERLRITEPEVMDILSFLIVDGRVKGRIDEHKGVLE 412
Query: 339 VFEGAEIDKTYEKALETITSMGKVIDTLYQKAKKLT 374
+ + D ++ IT + + + L+ K T
Sbjct: 413 LESREDADH-----VQAITVLSEAVGNLFNAVFKST 443
>sp|Q5B3U7|CSN2_EMENI COP9 signalosome complex subunit 2 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=csnB PE=1 SV=2
Length = 506
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/300 (21%), Positives = 132/300 (44%), Gaps = 55/300 (18%)
Query: 113 RTFLRQSLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKN------LLVEVLLLESK 166
R +L+ ++ +L L+ + EY + K L + ++ D + L+E+ LE +
Sbjct: 151 RLWLKTNI--KLARLWLERREYGQLSKKVRELHRACQREDGSDDPSKGTYLLELYALEIQ 208
Query: 167 TYHALSNLSTSRASLTSARTTANSIYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEA 226
Y N +A A +++ PK+ + G +H + E++++ A S F+E+
Sbjct: 209 MYAETKNNKRLKALYQRALRVRSAV-PHPKIMGIIRECGGKMHMS-EENWEEAQSDFFES 266
Query: 227 FEGFSTVDHNHAMMSLKYMLLSKIMLNTPEDVN--------------------------- 259
F + + LKY++L+ +++ + D+N
Sbjct: 267 FRNYDEAGSMQRIQVLKYLVLTTMLMKS--DINPFHSQETKPYKTDPRISAMTDLVDAFQ 324
Query: 260 --------QILSELED---DTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKL 308
++LS+ D D + +I + NM + + ++I PY+R + FI+K IK+
Sbjct: 325 RDDIHAYEEVLSKNPDVLADPFIAENIDEVSRNMRTKAILKLIAPYTRFTLSFISKHIKI 384
Query: 309 DELAVEKKLSQMILDKKFHGILDQGEKVLIVFEGAEIDKTYEKALETITSMGKVIDTLYQ 368
+ LS +ILDKK + +DQ ++V +++++ L ++ + + TL+Q
Sbjct: 385 SVTEAQDILSFLILDKKLNAKIDQESGTVVVESASDVER-----LRSVEEWNESLRTLWQ 439
>sp|O01422|CSN2_CAEEL COP9 signalosome complex subunit 2 OS=Caenorhabditis elegans
GN=csn-2 PE=1 SV=2
Length = 495
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 68/297 (22%), Positives = 121/297 (40%), Gaps = 57/297 (19%)
Query: 108 AKEERRTFLRQSLEARLIALYFDTGEYTEALKLSSSL---LKELKKLDDK---NLLVEVL 161
AK ER F +L L+FD E+T+ K+ L K + +D+ L+E+
Sbjct: 139 AKNERLWF---KTNTKLGKLFFDLHEFTKLEKIVKQLKVSCKNEQGEEDQRKGTQLLEIY 195
Query: 162 LLESKTYHALSNLSTSRA--SLTSARTTANSIYCPPKMQAALDLQSGILHAADEQDFKTA 219
LE + Y N + L + S P + + G +H D + F A
Sbjct: 196 ALEIQMYTEQKNNKALKWVYELATQAIHTKSAIPHPLILGTIRECGGKMHLRDGR-FLDA 254
Query: 220 FSYFYEAFEGFSTVDHNHAMMSLKYMLLSKIML----------------NTPEDV----- 258
+ F+EAF+ + LKY++L+ +++ N PE V
Sbjct: 255 HTDFFEAFKNYDESGSPRRTTCLKYLVLANMLIKSDINPFDSQEAKPFKNEPEIVAMTQM 314
Query: 259 ------------NQILSELED----DTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFI 302
QI++ +D D ++ H L +N+ Q L R+I PY+ V + ++
Sbjct: 315 VQAYQDNDIQAFEQIMAAHQDSIMADPFIREHTEELMNNIRTQVLLRLIRPYTNVRISYL 374
Query: 303 AKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFEGAEIDKTYEKALETITSM 359
++ +K+ +K++ +++D ILD G + I E I+ K +TS+
Sbjct: 375 SQKLKVS----QKEVIHLLVD----AILDDGLEAKINEESGMIEMPKNKKKMMVTSL 423
>sp|Q9VVU5|CSN1_DROME COP9 signalosome complex subunit 1b OS=Drosophila melanogaster
GN=CSN1b PE=2 SV=1
Length = 525
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 261 ILSELED----DTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKK 316
+L E+ D D + H+ TLY + + L + PY ++ +A + +E +
Sbjct: 373 LLDEIRDNLLVDMYIAPHVTTLYTKIRNRALIQYFSPYMSADMHKMAMAFNSSVGDLENE 432
Query: 317 LSQMILDKKFHGILDQGEKVLIVFEGAEIDKTYEKAL 353
+ Q+ILD + +D K+L E + + T+E+AL
Sbjct: 433 VMQLILDGQIQARIDSHNKILFAKEADQRNSTFERAL 469
>sp|P45432|CSN1_ARATH COP9 signalosome complex subunit 1 OS=Arabidopsis thaliana GN=CSN1
PE=1 SV=2
Length = 441
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 268 DTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFH 327
D + H+ TLYD + ++ L + P+ V++ +A + K +EK+L +I D +
Sbjct: 324 DIHLHDHVDTLYDQIRKKALIQYTLPFVSVDLSRMADAFKTSVSGLEKELEALITDNQIQ 383
Query: 328 GILDQGEKVLIVFEGAEIDKTYEKALETITSMGKVID 364
+D K+L + + T++K L+ MG D
Sbjct: 384 ARIDSHNKILYARHADQRNATFQKVLQ----MGNEFD 416
>sp|Q9HFR0|CSN2_SCHPO COP9 signalosome complex subunit 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=csn2 PE=1 SV=1
Length = 437
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/182 (18%), Positives = 82/182 (45%), Gaps = 38/182 (20%)
Query: 195 PKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEGFSTVDHNHAMMSLKYMLLSKIM--- 251
P++ + G +H + Q + A + F+E+F+ + + + LKY++L+ ++
Sbjct: 233 PRIMGIIRECGGKMHMQENQ-WSEAQTNFFESFKSYDEAGSSDRIRVLKYLVLANMLSES 291
Query: 252 ----LNTPED--------------------------VNQILS----ELEDDTIVKAHIGT 277
++PE V +IL ++ DD ++ ++
Sbjct: 292 EINPFDSPETQPYKDNPHIIAMTKLVEAYQIRDITAVERILQTYQHDILDDDFIRQYVDK 351
Query: 278 LYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVL 337
+ ++ Q L +++PY+ V++ +AK + + +E+ L +I+D++ +G +D +V
Sbjct: 352 ILYSIRSQVLIELVKPYTSVKLSLLAKKLGVSISIIEQALVGLIIDERVNGKIDMVNEVF 411
Query: 338 IV 339
+
Sbjct: 412 TI 413
>sp|Q99LD4|CSN1_MOUSE COP9 signalosome complex subunit 1 OS=Mus musculus GN=Gps1 PE=1
SV=1
Length = 471
Score = 40.4 bits (93), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 260 QILSELED----DTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEK 315
++L E++D D + H+ TLY + + L + PY ++ +A + A+E
Sbjct: 323 KMLDEMKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMHKMAAAFNTTVAALED 382
Query: 316 KLSQMILDKKFHGILDQGEKVLIVFEGAEIDKTYEKAL 353
+L+Q+IL+ + +D K+L + + T+EK+L
Sbjct: 383 ELTQLILEGLINARIDSHSKILYARDVDQRSTTFEKSL 420
>sp|Q6NRT5|CSN1_XENLA COP9 signalosome complex subunit 1 OS=Xenopus laevis GN=csn1 PE=2
SV=1
Length = 487
Score = 40.0 bits (92), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 54/106 (50%), Gaps = 8/106 (7%)
Query: 260 QILSELED----DTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEK 315
++L E++D D + H+ TLY + + L + PY ++ +A + A+E
Sbjct: 339 KMLDEIKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMYKMATAFNTTVSALED 398
Query: 316 KLSQMILDKKFHGILDQGEKVLIVFEGAEIDKTYEKALETITSMGK 361
+L+Q+IL+ + +D K+L + + T+EK+L+ MG+
Sbjct: 399 ELTQLILEGLINARIDSHSKILYARDVDQRSTTFEKSLQ----MGR 440
>sp|P97834|CSN1_RAT COP9 signalosome complex subunit 1 OS=Rattus norvegicus GN=Gps1
PE=1 SV=1
Length = 471
Score = 40.0 bits (92), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 260 QILSELED----DTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEK 315
++L E++D D + H+ TLY + + L + PY ++ +A + A+E
Sbjct: 323 KMLDEMKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMHKMAAAFNTTVAALED 382
Query: 316 KLSQMILDKKFHGILDQGEKVLIVFEGAEIDKTYEKAL 353
+L+Q+IL+ + +D K+L + + T+EK+L
Sbjct: 383 ELTQVILEGLINARIDSHSKILYARDVDQRSTTFEKSL 420
>sp|Q13098|CSN1_HUMAN COP9 signalosome complex subunit 1 OS=Homo sapiens GN=GPS1 PE=1
SV=4
Length = 491
Score = 39.7 bits (91), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 260 QILSELED----DTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEK 315
++L E++D D + H+ TLY + + L + PY ++ +A + A+E
Sbjct: 343 KMLDEMKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMHRMAAAFNTTVAALED 402
Query: 316 KLSQMILDKKFHGILDQGEKVLIVFEGAEIDKTYEKAL 353
+L+Q+IL+ +D K+L + + T+EK+L
Sbjct: 403 ELTQLILEGLISARVDSHSKILYARDVDQRSTTFEKSL 440
>sp|Q54QX3|CSN1_DICDI COP9 signalosome complex subunit 1 OS=Dictyostelium discoideum
GN=csn1 PE=1 SV=1
Length = 458
Score = 35.4 bits (80), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 40/82 (48%)
Query: 274 HIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQG 333
H+ LY + + L + PY V++ +A + +EK++S++I++ + +D
Sbjct: 318 HVEILYQRIRSKALVQYFSPYQSVDMNIMASAFNTTVTLLEKEISKLIMENEIQARIDSH 377
Query: 334 EKVLIVFEGAEIDKTYEKALET 355
K L + + T+EK ++
Sbjct: 378 NKRLYARKADQRTTTFEKTVQV 399
>sp|Q8UIQ2|LEPA_AGRT5 Elongation factor 4 OS=Agrobacterium tumefaciens (strain C58 / ATCC
33970) GN=lepA PE=3 SV=1
Length = 608
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 12/122 (9%)
Query: 230 FSTVDHNHAMMSLKYMLLSKIMLNT--PEDVNQILSEL-----EDDTIVKAHIGTLYDNM 282
+ +D+NH ++++ L+KI L PE + + + E+ D ++ A G ++
Sbjct: 126 YQAIDNNHELVTV----LNKIDLPAAEPERIKEQIEEVIGIDASDAVMISAKTGLGIPDV 181
Query: 283 LEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFEG 342
LE + R+ P S V K++ +D + L M+L + G+L +G+++ ++ G
Sbjct: 182 LEAIVNRLPPPKSDVGENGPLKALLVDSW-YDTYLGVMVLVRVIDGVLTKGQQIRMMGSG 240
Query: 343 AE 344
A+
Sbjct: 241 AK 242
>sp|O94308|CSN1_SCHPO COP9 signalosome complex subunit 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=csn1 PE=1 SV=1
Length = 422
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 65/151 (43%), Gaps = 18/151 (11%)
Query: 225 EAFEGFSTVDHN-----HAMMSLKYMLLSKIMLNTPEDVNQILSELEDDTIVKAHIGTLY 279
E F S +D + A + KY LL + +D + D + + L+
Sbjct: 252 EEFNALSDLDPSLRRCLQAKCNRKYSLLLDTLQQNAQDYSL-------DMYLAPQLTNLF 304
Query: 280 DNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIV 339
+ E++L + PYS + IA +DE +EK L ++I KK +G +D +K + +
Sbjct: 305 SLIRERSLLDYLIPYSALPFSKIAVDFHIDENFIEKNLLEIIEAKKLNGKVDSLQKRVYI 364
Query: 340 FEGAEIDKTYEKALETITSMGKVIDTLYQKA 370
+E + E I ++ + LY KA
Sbjct: 365 EPSSEPEN-----FEDIKNIAQT-SLLYSKA 389
>sp|Q1ZXG3|C522A_DICDI Probable cytochrome P450 522A1 OS=Dictyostelium discoideum
GN=cyp522A1 PE=3 SV=1
Length = 489
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 16/133 (12%)
Query: 196 KMQAALDLQS-GILHAADEQDFKTAFSYFYEAFEGFSTVDHNHAMMSLKYMLLSKIMLNT 254
K+Q +L G L+A D++ F +F FY+ ++ F + K+ I+LN+
Sbjct: 30 KVQGPFNLPLLGALYAFDKERFHKSFDKFYDKYKDFYFI---------KFGQHDCIVLNS 80
Query: 255 PEDVNQILSELEDDTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVE 314
P+ + Q++ E D + H ++ +++ + FI S +
Sbjct: 81 PKLIKQVVIEQSDSVFERFHTPSIKRYAQGKSILGCSPDEWKKLRSFIVISFS------K 134
Query: 315 KKLSQMILDKKFH 327
K+ Q +LDK FH
Sbjct: 135 NKMGQQVLDKIFH 147
>sp|Q8L4E9|RH36_ORYSJ DEAD-box ATP-dependent RNA helicase 36 OS=Oryza sativa subsp.
japonica GN=Os07g0633500 PE=3 SV=1
Length = 501
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 16/55 (29%)
Query: 221 SYFYEAFEGFSTVDHNHAMMSLKYMLLSKIMLNTPEDVNQ-----ILSELEDDTI 270
SYF+EA+EGF TVD L ++ ++ P D + +LS++ +D I
Sbjct: 278 SYFFEAYEGFKTVD-----------TLKQLYIHVPPDAKELYLFYLLSKMNEDNI 321
>sp|O27428|SYI_METTH Isoleucine--tRNA ligase OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 /
Delta H) GN=ileS PE=3 SV=3
Length = 1044
Score = 32.0 bits (71), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 14/93 (15%)
Query: 71 ISKAKAAKLVRSLVDFF--LDLETRTGMEVAL-CKECIEWAKEERRTFLRQSLEARLIAL 127
+S+A A +LVR + D LDL+ +EV++ C E E +R F+ + A ++
Sbjct: 958 MSEAMARELVRRIQDMRKDLDLDVEASIEVSVKCSEEFRELTEPQREFIENEVRASTLSF 1017
Query: 128 YFDTGEYTEALKLSSSLLKELKKLDDKNLLVEV 160
+ EYT+ K+S D+NL++ +
Sbjct: 1018 DYSELEYTKEWKIS-----------DENLIISI 1039
>sp|P75028|PCXA_SYNY3 Proton extrusion protein PcxA OS=Synechocystis sp. (strain PCC 6803
/ Kazusa) GN=pcxA PE=1 SV=1
Length = 440
Score = 31.6 bits (70), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 60/128 (46%), Gaps = 9/128 (7%)
Query: 6 MFERSASQISITGNSYKTGYEEENHDEEVKAKEQNILQLGEKYKQEGKAIELAELIKKTR 65
FER++ + I + YEE +H EE + + +L GEK E K +LAE K+
Sbjct: 249 FFERNSEVVFINQSMETEAYEELSHFEE-SLRFRELLGFGEKLSPEAKEEKLAEKAKEIS 307
Query: 66 PFLSQISKAKAAKL---VRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQSLEA 122
++S A + + SLV F L L + E+ + KE I +E L S +A
Sbjct: 308 ESYRRVSTNAIANIFADIFSLVAFSLVL-VNSQREIEVLKEFI----DEIVYGLSDSAKA 362
Query: 123 RLIALYFD 130
LI L+ D
Sbjct: 363 FLIILFTD 370
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.351
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,569,177
Number of Sequences: 539616
Number of extensions: 4542518
Number of successful extensions: 18987
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 18893
Number of HSP's gapped (non-prelim): 122
length of query: 374
length of database: 191,569,459
effective HSP length: 119
effective length of query: 255
effective length of database: 127,355,155
effective search space: 32475564525
effective search space used: 32475564525
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)