Query psy4083
Match_columns 374
No_of_seqs 185 out of 700
Neff 7.3
Searched_HMMs 29240
Date Sat Aug 17 00:52:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4083.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4083hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3txn_A 26S proteasome regulato 100.0 1.4E-75 4.8E-80 581.3 37.5 349 26-374 7-394 (394)
2 4b4t_P 26S proteasome regulato 100.0 5.7E-51 2E-55 412.7 22.6 332 27-373 49-429 (445)
3 4b4t_Q 26S proteasome regulato 100.0 1.4E-46 4.6E-51 370.2 32.8 342 31-373 48-433 (434)
4 4b4t_R RPN7, 26S proteasome re 100.0 6.3E-43 2.2E-47 352.2 23.9 324 28-365 41-423 (429)
5 4b4t_O 26S proteasome regulato 99.8 1.6E-18 5.6E-23 172.3 21.9 244 125-369 83-383 (393)
6 1ufm_A COP9 complex subunit 4; 99.7 4.6E-18 1.6E-22 132.6 4.9 72 273-344 7-78 (84)
7 3t5x_A PCI domain-containing p 99.6 2E-15 6.9E-20 136.9 13.8 146 197-343 12-194 (203)
8 4b4t_S RPN3, 26S proteasome re 99.5 1.8E-13 6.3E-18 138.8 18.2 183 158-343 231-449 (523)
9 3t5v_B Nuclear mRNA export pro 99.4 1.1E-10 3.9E-15 117.4 23.6 186 156-342 174-429 (455)
10 3ro2_A PINS homolog, G-protein 98.6 2.3E-05 7.9E-10 71.5 24.3 112 122-235 187-298 (338)
11 3ro2_A PINS homolog, G-protein 98.5 1.1E-05 3.8E-10 73.7 21.2 192 40-234 125-337 (338)
12 3sf4_A G-protein-signaling mod 98.5 4E-05 1.4E-09 72.6 24.5 111 123-235 192-302 (406)
13 3u3w_A Transcriptional activat 98.5 6.5E-06 2.2E-10 76.5 17.9 192 42-236 79-273 (293)
14 3sf4_A G-protein-signaling mod 98.5 2.6E-05 9E-10 73.9 22.2 193 40-235 129-342 (406)
15 4a1s_A PINS, partner of inscut 98.5 1.8E-05 6.1E-10 75.9 21.1 195 40-237 168-380 (411)
16 4a1s_A PINS, partner of inscut 98.4 6.8E-05 2.3E-09 71.8 24.5 111 123-235 228-338 (411)
17 3q15_A PSP28, response regulat 98.4 0.00012 4E-09 70.3 23.7 204 41-252 104-311 (378)
18 3ulq_A Response regulator aspa 98.3 0.0001 3.5E-09 70.6 23.1 203 44-252 109-314 (383)
19 2qfc_A PLCR protein; TPR, HTH, 98.3 4.2E-05 1.4E-09 71.0 18.6 196 40-238 77-275 (293)
20 3nf1_A KLC 1, kinesin light ch 98.3 0.00024 8.1E-09 64.6 23.3 186 39-228 28-223 (311)
21 3ulq_A Response regulator aspa 98.3 0.0002 6.9E-09 68.6 23.7 183 39-225 144-331 (383)
22 2ifu_A Gamma-SNAP; membrane fu 98.3 0.00067 2.3E-08 63.4 26.1 187 31-227 33-222 (307)
23 3gw4_A Uncharacterized protein 98.2 0.0002 6.7E-09 61.3 20.4 143 94-238 42-185 (203)
24 1qqe_A Vesicular transport pro 98.2 0.0032 1.1E-07 58.3 30.4 191 33-230 36-229 (292)
25 3edt_B KLC 2, kinesin light ch 98.2 0.0007 2.4E-08 60.2 24.4 187 39-229 44-281 (283)
26 3ro3_A PINS homolog, G-protein 98.2 7.7E-05 2.6E-09 60.5 16.3 108 123-232 54-161 (164)
27 3ro3_A PINS homolog, G-protein 98.2 0.00051 1.8E-08 55.4 20.4 149 39-188 10-159 (164)
28 3q15_A PSP28, response regulat 98.1 0.00079 2.7E-08 64.4 24.0 182 39-225 142-328 (378)
29 3nf1_A KLC 1, kinesin light ch 98.1 0.0011 3.8E-08 60.0 23.3 186 39-228 70-306 (311)
30 3gw4_A Uncharacterized protein 98.0 0.0012 4E-08 56.3 20.7 167 39-207 27-195 (203)
31 1hz4_A MALT regulatory protein 97.9 0.0088 3E-07 56.4 25.9 190 39-232 15-206 (373)
32 4b4t_Q 26S proteasome regulato 97.8 0.0021 7.2E-08 61.9 21.2 201 45-248 11-223 (434)
33 3uq3_A Heat shock protein STI1 97.8 0.008 2.8E-07 52.6 22.0 174 39-229 6-202 (258)
34 1qqe_A Vesicular transport pro 97.7 0.0044 1.5E-07 57.3 20.9 148 39-188 78-229 (292)
35 4gcn_A Protein STI-1; structur 97.7 0.00032 1.1E-08 57.0 11.3 101 123-230 13-113 (127)
36 3qky_A Outer membrane assembly 97.7 0.0064 2.2E-07 54.6 20.7 182 39-232 16-227 (261)
37 3chm_A COP9 signalosome comple 97.7 9.8E-05 3.4E-09 64.5 7.8 70 276-345 89-160 (169)
38 3vtx_A MAMA; tetratricopeptide 97.6 0.0057 1.9E-07 51.6 18.6 164 39-228 6-169 (184)
39 3uq3_A Heat shock protein STI1 97.6 0.0058 2E-07 53.5 19.2 94 123-230 144-237 (258)
40 2qfc_A PLCR protein; TPR, HTH, 97.6 0.0051 1.7E-07 56.7 19.5 107 123-230 120-226 (293)
41 4b0z_A RPN12, 26S proteasome r 97.6 0.0083 2.8E-07 54.7 20.4 185 129-319 18-214 (229)
42 1hz4_A MALT regulatory protein 97.6 0.01 3.4E-07 56.1 21.7 189 39-230 54-245 (373)
43 3fp2_A TPR repeat-containing p 97.6 0.0066 2.3E-07 59.8 20.3 143 123-286 383-535 (537)
44 3edt_B KLC 2, kinesin light ch 97.5 0.0076 2.6E-07 53.3 18.8 106 123-229 90-198 (283)
45 2ifu_A Gamma-SNAP; membrane fu 97.5 0.018 6.1E-07 53.5 21.9 144 40-185 78-222 (307)
46 2vq2_A PILW, putative fimbrial 97.5 0.014 4.8E-07 49.8 19.4 167 39-229 9-176 (225)
47 3hym_B Cell division cycle pro 97.5 0.0067 2.3E-07 55.2 17.6 100 123-230 198-300 (330)
48 3ieg_A DNAJ homolog subfamily 97.4 0.027 9.2E-07 51.6 21.8 99 123-231 239-337 (359)
49 2ho1_A Type 4 fimbrial biogene 97.4 0.026 8.9E-07 49.6 20.2 168 39-230 38-205 (252)
50 3hym_B Cell division cycle pro 97.4 0.017 5.7E-07 52.6 19.4 100 123-230 164-266 (330)
51 3as5_A MAMA; tetratricopeptide 97.3 0.012 4.2E-07 48.3 16.4 164 39-228 9-172 (186)
52 4i17_A Hypothetical protein; T 97.3 0.014 4.6E-07 51.1 17.4 137 39-187 8-146 (228)
53 3ieg_A DNAJ homolog subfamily 97.3 0.082 2.8E-06 48.3 23.0 172 42-229 124-301 (359)
54 2q7f_A YRRB protein; TPR, prot 97.3 0.02 6.7E-07 49.8 17.7 164 40-229 59-222 (243)
55 1fch_A Peroxisomal targeting s 97.3 0.016 5.6E-07 53.8 18.0 93 123-229 222-314 (368)
56 2xpi_A Anaphase-promoting comp 97.2 0.011 3.9E-07 59.1 17.8 100 123-229 446-545 (597)
57 3u3w_A Transcriptional activat 97.2 0.0078 2.7E-07 55.4 15.2 112 123-235 120-231 (293)
58 4eqf_A PEX5-related protein; a 97.2 0.017 5.8E-07 54.1 17.7 96 123-230 182-277 (365)
59 2ho1_A Type 4 fimbrial biogene 97.2 0.023 7.8E-07 49.9 17.6 169 39-231 72-240 (252)
60 2xev_A YBGF; tetratricopeptide 97.2 0.011 3.6E-07 46.5 13.5 101 123-231 7-107 (129)
61 2pl2_A Hypothetical conserved 97.1 0.043 1.5E-06 48.2 18.3 166 40-226 41-211 (217)
62 1elr_A TPR2A-domain of HOP; HO 97.1 0.0058 2E-07 47.4 11.3 101 123-230 9-109 (131)
63 2y4t_A DNAJ homolog subfamily 97.1 0.05 1.7E-06 52.1 20.1 98 123-230 262-359 (450)
64 2gw1_A Mitochondrial precursor 97.1 0.043 1.5E-06 53.3 19.9 100 123-230 377-479 (514)
65 4eqf_A PEX5-related protein; a 97.1 0.11 3.7E-06 48.4 21.9 172 41-230 68-243 (365)
66 2xpi_A Anaphase-promoting comp 97.1 0.034 1.2E-06 55.6 19.4 99 123-229 480-579 (597)
67 3u4t_A TPR repeat-containing p 97.0 0.015 5.1E-07 51.7 14.6 169 39-231 4-173 (272)
68 2vq2_A PILW, putative fimbrial 97.0 0.052 1.8E-06 46.2 17.2 166 40-227 44-209 (225)
69 2pl2_A Hypothetical conserved 96.9 0.054 1.8E-06 47.5 17.2 162 40-228 7-179 (217)
70 1fch_A Peroxisomal targeting s 96.9 0.21 7.1E-06 46.2 22.1 94 41-146 67-160 (368)
71 2y4t_A DNAJ homolog subfamily 96.9 0.31 1.1E-05 46.5 27.3 173 41-229 146-324 (450)
72 2yhc_A BAMD, UPF0169 lipoprote 96.9 0.11 3.6E-06 45.7 19.1 181 39-229 5-213 (225)
73 2yhc_A BAMD, UPF0169 lipoprote 96.9 0.15 5.2E-06 44.6 20.1 136 39-187 42-213 (225)
74 4gco_A Protein STI-1; structur 96.9 0.0096 3.3E-07 48.1 11.0 92 123-228 18-109 (126)
75 2q7f_A YRRB protein; TPR, prot 96.9 0.012 4.1E-07 51.1 12.5 165 39-229 24-188 (243)
76 3vtx_A MAMA; tetratricopeptide 96.9 0.042 1.4E-06 46.0 15.4 130 40-187 41-170 (184)
77 3cv0_A Peroxisome targeting si 96.9 0.21 7.3E-06 44.9 21.2 94 123-230 177-270 (327)
78 3rkv_A Putative peptidylprolyl 96.8 0.017 6E-07 47.8 12.6 98 123-228 16-125 (162)
79 3cv0_A Peroxisome targeting si 96.8 0.068 2.3E-06 48.3 17.6 98 123-228 211-314 (327)
80 3qky_A Outer membrane assembly 96.8 0.059 2E-06 48.1 16.4 137 38-187 52-224 (261)
81 4gyw_A UDP-N-acetylglucosamine 96.7 0.054 1.9E-06 57.4 17.6 162 39-226 10-171 (723)
82 1a17_A Serine/threonine protei 96.7 0.11 3.6E-06 42.1 16.0 130 39-226 14-143 (166)
83 3fp2_A TPR repeat-containing p 96.7 0.094 3.2E-06 51.3 18.3 168 35-229 240-407 (537)
84 4gcn_A Protein STI-1; structur 96.6 0.15 5.1E-06 40.7 16.4 114 41-204 11-125 (127)
85 3upv_A Heat shock protein STI1 96.5 0.026 9E-07 44.4 10.9 93 123-229 9-101 (126)
86 1w3b_A UDP-N-acetylglucosamine 96.5 0.26 8.8E-06 46.3 19.7 94 123-230 242-335 (388)
87 4i17_A Hypothetical protein; T 96.5 0.037 1.3E-06 48.2 12.8 96 124-229 48-146 (228)
88 2fo7_A Synthetic consensus TPR 96.5 0.19 6.5E-06 38.3 15.5 130 40-187 3-132 (136)
89 2kck_A TPR repeat; tetratricop 96.5 0.032 1.1E-06 41.8 10.7 97 123-231 11-108 (112)
90 4ga2_A E3 SUMO-protein ligase 96.4 0.032 1.1E-06 46.1 11.1 90 123-226 36-125 (150)
91 3urz_A Uncharacterized protein 96.4 0.2 6.8E-06 43.4 16.8 113 39-187 5-117 (208)
92 3sz7_A HSC70 cochaperone (SGT) 96.4 0.045 1.5E-06 45.3 12.0 94 123-230 16-109 (164)
93 1wi9_A Protein C20ORF116 homol 96.4 0.0086 2.9E-07 44.3 6.4 58 285-342 10-67 (72)
94 3q49_B STIP1 homology and U bo 96.3 0.036 1.2E-06 43.8 10.9 92 123-228 14-105 (137)
95 1hh8_A P67PHOX, NCF-2, neutrop 96.3 0.084 2.9E-06 45.1 13.5 105 123-234 42-155 (213)
96 2lni_A Stress-induced-phosphop 96.2 0.031 1.1E-06 43.4 9.8 93 123-229 21-113 (133)
97 1w3b_A UDP-N-acetylglucosamine 96.2 0.28 9.5E-06 46.1 18.3 28 41-68 70-97 (388)
98 1xnf_A Lipoprotein NLPI; TPR, 96.2 0.45 1.5E-05 41.7 18.6 190 39-257 44-233 (275)
99 2dba_A Smooth muscle cell asso 96.2 0.06 2.1E-06 42.7 11.4 97 123-230 33-129 (148)
100 1elr_A TPR2A-domain of HOP; HO 96.2 0.29 1E-05 37.3 16.9 115 39-203 5-120 (131)
101 1elw_A TPR1-domain of HOP; HOP 96.2 0.078 2.7E-06 39.9 11.5 94 123-230 9-102 (118)
102 2gw1_A Mitochondrial precursor 96.1 0.77 2.6E-05 44.2 21.2 98 124-230 192-300 (514)
103 3as5_A MAMA; tetratricopeptide 96.1 0.32 1.1E-05 39.5 15.9 132 39-188 43-174 (186)
104 3u4t_A TPR repeat-containing p 96.0 0.024 8.3E-07 50.3 9.1 95 123-228 8-102 (272)
105 2vyi_A SGTA protein; chaperone 96.0 0.084 2.9E-06 40.4 10.9 93 123-229 17-109 (131)
106 3rkv_A Putative peptidylprolyl 95.9 0.3 1E-05 40.1 14.9 132 40-208 13-145 (162)
107 4ga2_A E3 SUMO-protein ligase 95.8 0.021 7.2E-07 47.3 7.0 92 123-228 2-93 (150)
108 3n71_A Histone lysine methyltr 95.8 0.48 1.6E-05 47.7 18.3 129 95-226 326-461 (490)
109 3mkr_A Coatomer subunit epsilo 95.8 0.37 1.2E-05 44.4 16.3 24 40-63 103-126 (291)
110 2fbn_A 70 kDa peptidylprolyl i 95.7 0.082 2.8E-06 45.2 11.0 99 123-229 43-151 (198)
111 4abn_A Tetratricopeptide repea 95.7 0.12 4.1E-06 51.3 13.6 167 39-229 103-287 (474)
112 3mv2_B Coatomer subunit epsilo 95.7 0.078 2.7E-06 50.4 11.5 99 123-232 105-210 (310)
113 3n71_A Histone lysine methyltr 95.7 0.28 9.4E-06 49.5 16.2 106 124-231 315-424 (490)
114 1p5q_A FKBP52, FK506-binding p 95.7 0.55 1.9E-05 44.2 17.5 140 39-223 148-287 (336)
115 1a17_A Serine/threonine protei 95.7 0.11 3.8E-06 42.0 11.0 94 123-230 18-111 (166)
116 2fbn_A 70 kDa peptidylprolyl i 95.6 0.41 1.4E-05 40.7 15.1 113 39-187 39-151 (198)
117 3mkr_A Coatomer subunit epsilo 95.6 1.4 4.7E-05 40.4 20.4 20 42-61 38-57 (291)
118 1ihg_A Cyclophilin 40; ppiase 95.6 0.14 4.9E-06 49.3 13.1 99 123-229 228-336 (370)
119 2xcb_A PCRH, regulatory protei 95.6 0.11 3.7E-06 42.0 10.5 93 123-229 23-115 (142)
120 2vgx_A Chaperone SYCD; alterna 95.5 0.11 3.7E-06 42.8 10.5 93 123-229 26-118 (148)
121 1na0_A Designed protein CTPR3; 95.5 0.17 5.7E-06 38.3 10.9 93 123-229 14-106 (125)
122 3gyz_A Chaperone protein IPGC; 95.5 0.13 4.5E-06 43.0 11.0 94 123-230 41-134 (151)
123 4gco_A Protein STI-1; structur 95.5 0.5 1.7E-05 37.6 14.1 59 124-188 53-111 (126)
124 2xev_A YBGF; tetratricopeptide 95.4 0.4 1.4E-05 37.0 13.1 62 123-187 44-105 (129)
125 2fo7_A Synthetic consensus TPR 95.4 0.18 6.2E-06 38.4 10.8 93 123-229 6-98 (136)
126 3lpz_A GET4 (YOR164C homolog); 95.4 1.1 3.8E-05 42.9 18.3 138 39-181 56-210 (336)
127 3upv_A Heat shock protein STI1 95.4 0.52 1.8E-05 36.6 13.8 96 40-187 6-101 (126)
128 2l6j_A TPR repeat-containing p 95.4 0.02 7E-07 43.4 5.1 90 123-220 9-98 (111)
129 1hxi_A PEX5, peroxisome target 95.4 0.13 4.6E-06 40.7 10.2 92 123-228 22-113 (121)
130 4abn_A Tetratricopeptide repea 95.2 0.57 1.9E-05 46.3 16.5 159 39-221 138-313 (474)
131 2wpv_A GET4, UPF0363 protein Y 95.1 1.3 4.6E-05 41.9 17.8 99 37-139 52-155 (312)
132 1kt0_A FKBP51, 51 kDa FK506-bi 95.0 0.8 2.7E-05 45.1 16.9 149 39-232 269-418 (457)
133 3gyz_A Chaperone protein IPGC; 94.9 0.68 2.3E-05 38.5 13.8 70 123-202 75-144 (151)
134 2xcb_A PCRH, regulatory protei 94.9 0.69 2.4E-05 37.1 13.4 98 39-188 19-116 (142)
135 1hh8_A P67PHOX, NCF-2, neutrop 94.8 0.55 1.9E-05 39.8 13.4 133 41-188 9-151 (213)
136 2v5f_A Prolyl 4-hydroxylase su 94.8 0.38 1.3E-05 37.2 11.1 76 123-201 10-86 (104)
137 2lni_A Stress-induced-phosphop 94.8 0.49 1.7E-05 36.3 11.9 97 39-187 17-113 (133)
138 4g1t_A Interferon-induced prot 94.7 0.54 1.8E-05 45.2 14.3 182 40-228 249-458 (472)
139 1p5q_A FKBP52, FK506-binding p 94.7 0.23 7.8E-06 46.9 11.3 99 123-229 152-259 (336)
140 3sz7_A HSC70 cochaperone (SGT) 94.6 0.9 3.1E-05 37.1 13.8 98 39-188 12-109 (164)
141 4g1t_A Interferon-induced prot 94.6 0.24 8.3E-06 47.7 11.6 105 123-228 56-166 (472)
142 1xnf_A Lipoprotein NLPI; TPR, 94.6 0.24 8.2E-06 43.5 10.7 91 124-228 49-139 (275)
143 1kt0_A FKBP51, 51 kDa FK506-bi 94.6 0.28 9.5E-06 48.5 12.2 99 123-229 273-380 (457)
144 2e2e_A Formate-dependent nitri 94.5 0.48 1.6E-05 39.2 11.9 96 123-232 49-147 (177)
145 1ihg_A Cyclophilin 40; ppiase 94.5 0.65 2.2E-05 44.6 14.3 114 39-188 224-337 (370)
146 2c2l_A CHIP, carboxy terminus 94.4 0.24 8.2E-06 45.3 10.5 92 123-228 9-100 (281)
147 3k9i_A BH0479 protein; putativ 94.3 0.19 6.6E-06 39.0 8.4 89 131-230 3-91 (117)
148 3urz_A Uncharacterized protein 94.2 0.49 1.7E-05 40.9 11.7 92 123-228 9-116 (208)
149 3qww_A SET and MYND domain-con 94.2 0.46 1.6E-05 47.0 12.8 99 130-230 310-412 (433)
150 3q49_B STIP1 homology and U bo 94.1 1.1 3.9E-05 34.7 12.7 97 40-188 11-107 (137)
151 2vyi_A SGTA protein; chaperone 93.8 1.6 5.4E-05 32.9 12.9 97 39-187 13-109 (131)
152 2vgx_A Chaperone SYCD; alterna 93.8 1.5 5.1E-05 35.7 13.3 60 123-188 60-119 (148)
153 2ond_A Cleavage stimulation fa 93.7 3.1 0.00011 37.9 16.8 169 42-231 103-272 (308)
154 1elw_A TPR1-domain of HOP; HOP 93.7 1.6 5.3E-05 32.3 14.2 59 123-187 43-101 (118)
155 1ouv_A Conserved hypothetical 93.3 4.1 0.00014 35.9 20.4 161 39-229 7-179 (273)
156 1na0_A Designed protein CTPR3; 93.2 2 6.7E-05 32.0 12.5 59 123-187 48-106 (125)
157 4f3v_A ESX-1 secretion system 93.2 0.76 2.6E-05 42.9 11.5 124 118-257 102-226 (282)
158 3qwp_A SET and MYND domain-con 93.0 2.4 8.2E-05 41.7 15.6 77 123-199 334-414 (429)
159 2dba_A Smooth muscle cell asso 93.0 2.5 8.7E-05 32.8 14.8 99 40-187 30-128 (148)
160 2k02_A Ferrous iron transport 92.9 0.16 5.4E-06 39.1 5.3 45 285-329 5-49 (87)
161 3qww_A SET and MYND domain-con 92.8 4.1 0.00014 40.2 16.9 103 96-199 316-425 (433)
162 4gyw_A UDP-N-acetylglucosamine 92.8 1.2 4.1E-05 47.0 13.7 130 40-187 45-174 (723)
163 1xn7_A Hypothetical protein YH 92.8 0.13 4.3E-06 38.7 4.5 43 285-327 5-47 (78)
164 1ouv_A Conserved hypothetical 92.7 4.8 0.00017 35.4 19.5 27 40-66 40-70 (273)
165 2if4_A ATFKBP42; FKBP-like, al 92.6 0.57 2E-05 44.1 10.1 99 123-229 184-293 (338)
166 2hr2_A Hypothetical protein; a 92.5 1.4 4.7E-05 37.6 11.2 105 123-228 16-130 (159)
167 2h6f_A Protein farnesyltransfe 92.4 2.6 8.9E-05 40.6 14.7 166 37-228 96-268 (382)
168 1qgp_A Protein (double strande 92.4 0.38 1.3E-05 35.8 6.7 55 284-339 16-73 (77)
169 1b89_A Protein (clathrin heavy 92.1 3.2 0.00011 41.3 15.0 87 43-141 212-305 (449)
170 2pzi_A Probable serine/threoni 92.0 1.9 6.6E-05 44.7 14.0 128 40-186 435-562 (681)
171 3qwp_A SET and MYND domain-con 92.0 0.44 1.5E-05 47.1 8.6 103 127-231 296-402 (429)
172 3ma5_A Tetratricopeptide repea 91.9 0.67 2.3E-05 35.0 8.0 60 123-188 12-71 (100)
173 2if4_A ATFKBP42; FKBP-like, al 91.9 0.39 1.3E-05 45.3 7.9 149 39-229 180-328 (338)
174 2hr2_A Hypothetical protein; a 91.9 3.6 0.00012 34.9 13.2 103 41-146 14-130 (159)
175 2vsy_A XCC0866; transferase, g 91.8 3.3 0.00011 41.3 15.2 132 39-188 24-158 (568)
176 2ond_A Cleavage stimulation fa 91.7 6.1 0.00021 35.8 15.8 135 40-187 136-270 (308)
177 1na3_A Designed protein CTPR2; 91.6 0.7 2.4E-05 33.1 7.4 59 123-187 14-72 (91)
178 2vsy_A XCC0866; transferase, g 91.5 1.1 3.8E-05 44.9 11.2 92 123-228 28-119 (568)
179 2jt1_A PEFI protein; solution 91.3 0.28 9.6E-06 36.7 4.8 45 283-327 5-55 (77)
180 2kck_A TPR repeat; tetratricop 91.0 1.3 4.6E-05 32.4 8.7 61 123-187 45-106 (112)
181 3k9i_A BH0479 protein; putativ 90.9 4 0.00014 31.1 11.8 60 123-188 32-91 (117)
182 2r5s_A Uncharacterized protein 90.7 3.2 0.00011 34.2 11.8 131 39-185 41-171 (176)
183 4b0z_A RPN12, 26S proteasome r 90.6 1.7 5.8E-05 39.1 10.4 155 165-322 14-185 (229)
184 1xi4_A Clathrin heavy chain; a 90.5 6.2 0.00021 44.9 16.6 146 44-226 1055-1221(1630)
185 2pzi_A Probable serine/threoni 90.4 2.6 8.8E-05 43.7 13.1 153 49-228 402-562 (681)
186 2e2e_A Formate-dependent nitri 90.2 6.6 0.00022 32.0 13.7 58 124-187 84-144 (177)
187 1wao_1 Serine/threonine protei 89.9 0.5 1.7E-05 47.0 6.9 91 124-228 12-102 (477)
188 1qbj_A Protein (double-strande 89.7 0.43 1.5E-05 36.0 4.7 57 284-341 12-71 (81)
189 1xi4_A Clathrin heavy chain; a 89.6 7.8 0.00027 44.1 16.4 178 41-235 1283-1495(1630)
190 2kc7_A BFR218_protein; tetratr 89.6 1.8 6.1E-05 31.8 8.3 59 123-187 5-64 (99)
191 2ooe_A Cleavage stimulation fa 89.6 7.9 0.00027 38.1 15.4 168 42-230 325-493 (530)
192 3qou_A Protein YBBN; thioredox 89.3 4.2 0.00014 36.8 12.2 35 38-72 117-151 (287)
193 3r0a_A Putative transcriptiona 89.1 1.8 6.1E-05 34.8 8.4 73 297-369 43-117 (123)
194 2c2l_A CHIP, carboxy terminus 88.8 12 0.00043 33.5 15.1 96 40-147 6-101 (281)
195 3qou_A Protein YBBN; thioredox 88.7 8.4 0.00029 34.8 13.9 90 123-226 156-245 (287)
196 2kat_A Uncharacterized protein 88.6 2.1 7.1E-05 32.5 8.3 60 123-188 24-83 (115)
197 3mv2_B Coatomer subunit epsilo 87.7 13 0.00045 34.9 14.7 156 102-274 117-292 (310)
198 1z7u_A Hypothetical protein EF 87.6 3.8 0.00013 32.1 9.3 76 295-370 34-110 (112)
199 1sfx_A Conserved hypothetical 87.3 4.2 0.00014 30.7 9.3 45 288-332 26-70 (109)
200 1rz4_A Eukaryotic translation 87.0 0.53 1.8E-05 42.6 4.3 56 276-339 132-189 (226)
201 2heo_A Z-DNA binding protein 1 87.0 0.99 3.4E-05 32.4 5.0 42 287-328 15-57 (67)
202 4b4t_P 26S proteasome regulato 86.0 18 0.00062 35.5 15.4 109 39-187 138-247 (445)
203 4b4t_T 26S proteasome regulato 85.9 5.8 0.0002 36.7 10.9 45 274-318 177-222 (274)
204 2hzt_A Putative HTH-type trans 85.6 3.2 0.00011 32.3 7.8 68 294-361 25-93 (107)
205 1ub9_A Hypothetical protein PH 85.5 3.1 0.00011 31.2 7.6 39 294-332 28-66 (100)
206 1b89_A Protein (clathrin heavy 85.2 9.3 0.00032 37.9 12.6 24 164-187 213-236 (449)
207 2r5s_A Uncharacterized protein 85.1 8.9 0.0003 31.4 10.9 162 41-227 9-171 (176)
208 1wao_1 Serine/threonine protei 85.0 2 6.9E-05 42.5 7.8 88 123-224 45-134 (477)
209 4ham_A LMO2241 protein; struct 84.7 7.6 0.00026 31.5 10.0 65 275-341 16-81 (134)
210 2htj_A P fimbrial regulatory p 83.6 2.8 9.7E-05 30.8 6.3 42 287-328 5-46 (81)
211 1hxi_A PEX5, peroxisome target 83.1 12 0.0004 28.9 10.3 92 42-145 21-112 (121)
212 3tqn_A Transcriptional regulat 80.4 3.9 0.00013 32.3 6.4 63 275-339 11-74 (113)
213 3i4p_A Transcriptional regulat 80.3 6 0.0002 33.1 8.0 49 285-333 6-57 (162)
214 2fsw_A PG_0823 protein; alpha- 80.2 6.2 0.00021 30.5 7.5 68 294-361 36-104 (107)
215 1na3_A Designed protein CTPR2; 79.8 11 0.00038 26.3 8.4 66 156-229 7-72 (91)
216 2d1h_A ST1889, 109AA long hypo 79.6 13 0.00044 27.9 9.1 50 285-334 25-74 (109)
217 2l6j_A TPR repeat-containing p 79.6 15 0.00052 26.6 10.7 68 158-233 4-71 (111)
218 2kat_A Uncharacterized protein 79.5 12 0.00041 28.0 8.9 65 159-231 20-84 (115)
219 3rjv_A Putative SEL1 repeat pr 79.4 11 0.00039 32.1 9.7 87 123-228 23-117 (212)
220 2ia0_A Putative HTH-type trans 79.1 5.2 0.00018 34.0 7.2 48 286-333 21-71 (171)
221 2h6f_A Protein farnesyltransfe 79.0 45 0.0015 31.7 20.2 213 41-285 134-366 (382)
222 2p5v_A Transcriptional regulat 79.0 3.6 0.00012 34.4 6.1 48 286-333 14-64 (162)
223 3rjv_A Putative SEL1 repeat pr 77.5 32 0.0011 29.1 19.8 165 39-228 19-196 (212)
224 1yyv_A Putative transcriptiona 77.4 26 0.0009 28.1 11.4 70 294-363 46-116 (131)
225 1tbx_A ORF F-93, hypothetical 77.3 11 0.00038 28.3 8.0 74 288-363 14-91 (99)
226 3cuo_A Uncharacterized HTH-typ 77.2 14 0.00047 27.4 8.5 45 289-333 31-75 (99)
227 2kc7_A BFR218_protein; tetratr 76.9 9 0.00031 27.7 7.3 62 162-230 4-65 (99)
228 2ooe_A Cleavage stimulation fa 76.7 49 0.0017 32.2 14.7 135 40-187 358-492 (530)
229 3by6_A Predicted transcription 76.4 5.1 0.00017 32.3 6.1 64 275-340 13-77 (126)
230 2v5f_A Prolyl 4-hydroxylase su 75.9 12 0.00041 28.3 7.9 69 159-228 6-74 (104)
231 3neu_A LIN1836 protein; struct 75.6 5.5 0.00019 32.0 6.1 64 275-340 15-79 (125)
232 2xm6_A Protein corresponding t 74.4 63 0.0022 31.0 19.0 27 39-65 40-70 (490)
233 2fbi_A Probable transcriptiona 74.3 22 0.00074 28.0 9.5 52 287-338 41-92 (142)
234 1oyi_A Double-stranded RNA-bin 74.0 4.8 0.00016 30.4 4.8 39 289-328 24-62 (82)
235 3ma5_A Tetratricopeptide repea 73.9 15 0.0005 27.2 7.9 63 159-229 8-70 (100)
236 3f6o_A Probable transcriptiona 73.9 15 0.0005 28.9 8.1 54 276-331 13-66 (118)
237 2b0l_A GTP-sensing transcripti 73.8 4.6 0.00016 31.4 5.0 56 283-339 30-86 (102)
238 2frh_A SARA, staphylococcal ac 73.8 11 0.00038 29.8 7.5 41 295-335 52-92 (127)
239 2nnn_A Probable transcriptiona 73.3 20 0.00068 28.1 9.0 50 288-337 44-93 (140)
240 3jth_A Transcription activator 73.0 17 0.0006 27.1 8.1 50 282-333 24-73 (98)
241 2gxg_A 146AA long hypothetical 72.9 26 0.00088 27.7 9.6 49 286-335 41-89 (146)
242 1lj9_A Transcriptional regulat 72.8 24 0.00081 27.9 9.4 47 289-335 36-82 (144)
243 3bpv_A Transcriptional regulat 72.8 19 0.00064 28.2 8.7 53 287-339 34-86 (138)
244 2ek5_A Predicted transcription 72.2 7.4 0.00025 31.5 6.1 63 275-339 6-69 (129)
245 2cg4_A Regulatory protein ASNC 71.9 5.6 0.00019 32.7 5.4 48 286-333 12-62 (152)
246 1s3j_A YUSO protein; structura 71.8 24 0.0008 28.3 9.3 50 286-335 41-90 (155)
247 1v4r_A Transcriptional repress 71.7 2.5 8.6E-05 32.5 2.9 64 275-340 13-77 (102)
248 2f2e_A PA1607; transcription f 71.6 10 0.00035 31.2 6.9 67 294-361 35-101 (146)
249 2dbb_A Putative HTH-type trans 71.5 4.8 0.00017 33.1 4.9 48 286-333 13-63 (151)
250 2cfx_A HTH-type transcriptiona 71.2 5.4 0.00019 32.6 5.1 48 286-333 9-59 (144)
251 2rdp_A Putative transcriptiona 71.1 24 0.00081 28.1 9.1 43 294-336 54-96 (150)
252 2kko_A Possible transcriptiona 71.1 16 0.00056 28.1 7.7 37 295-331 37-73 (108)
253 1jgs_A Multiple antibiotic res 70.9 26 0.00088 27.4 9.1 44 293-336 45-88 (138)
254 1q1h_A TFE, transcription fact 70.6 2.6 8.8E-05 32.8 2.8 62 268-329 5-66 (110)
255 2a61_A Transcriptional regulat 70.5 24 0.00083 27.8 8.9 52 287-338 38-89 (145)
256 2oqg_A Possible transcriptiona 70.5 29 0.001 26.4 9.1 37 295-331 33-69 (114)
257 3tgn_A ADC operon repressor AD 70.5 17 0.0006 28.8 8.1 50 286-336 42-91 (146)
258 2pg4_A Uncharacterized protein 70.3 14 0.00046 27.7 6.9 58 267-327 3-62 (95)
259 3bja_A Transcriptional regulat 70.2 19 0.00064 28.2 8.1 50 287-336 38-87 (139)
260 2hr3_A Probable transcriptiona 70.0 26 0.00089 27.7 9.1 42 294-335 48-89 (147)
261 3bj6_A Transcriptional regulat 69.9 26 0.00087 28.0 9.0 51 285-335 43-93 (152)
262 3oop_A LIN2960 protein; protei 69.9 20 0.00067 28.5 8.2 48 288-335 43-90 (143)
263 4a5n_A Uncharacterized HTH-typ 69.7 30 0.001 28.0 9.3 70 294-363 37-107 (131)
264 2fbh_A Transcriptional regulat 69.7 27 0.00094 27.5 9.1 49 287-335 42-91 (146)
265 1ku9_A Hypothetical protein MJ 69.3 39 0.0013 26.6 10.0 41 295-335 40-80 (152)
266 3eco_A MEPR; mutlidrug efflux 69.0 33 0.0011 26.8 9.4 42 295-336 46-87 (139)
267 1xd7_A YWNA; structural genomi 68.6 7.7 0.00026 31.9 5.5 51 287-339 15-65 (145)
268 3ech_A MEXR, multidrug resista 68.4 30 0.001 27.3 9.1 52 286-337 41-92 (142)
269 2e1c_A Putative HTH-type trans 68.1 6.2 0.00021 33.5 4.9 47 286-332 31-80 (171)
270 2y75_A HTH-type transcriptiona 67.9 9.3 0.00032 30.5 5.8 45 295-339 25-69 (129)
271 3cjn_A Transcriptional regulat 67.8 30 0.001 28.0 9.2 49 287-335 57-105 (162)
272 3k0l_A Repressor protein; heli 67.5 27 0.00091 28.5 8.8 51 286-336 50-100 (162)
273 3s2w_A Transcriptional regulat 67.3 29 0.00099 28.1 8.9 43 293-335 61-103 (159)
274 2nyx_A Probable transcriptiona 66.9 32 0.0011 28.3 9.2 47 289-335 52-98 (168)
275 1klx_A Cysteine rich protein B 66.9 35 0.0012 27.0 9.1 87 124-228 31-125 (138)
276 4b4t_R RPN7, 26S proteasome re 66.3 97 0.0033 29.9 16.2 102 40-145 133-235 (429)
277 4f3v_A ESX-1 secretion system 65.9 41 0.0014 31.0 10.4 97 124-229 141-237 (282)
278 3ffl_A Anaphase-promoting comp 65.3 20 0.0007 30.6 7.5 67 160-227 22-90 (167)
279 2eth_A Transcriptional regulat 65.3 41 0.0014 26.9 9.5 48 288-335 50-97 (154)
280 2cyy_A Putative HTH-type trans 65.2 7.4 0.00025 32.0 4.8 47 286-332 11-60 (151)
281 2pn6_A ST1022, 150AA long hypo 65.1 9.4 0.00032 31.1 5.4 48 286-333 7-57 (150)
282 1i1g_A Transcriptional regulat 64.9 9.9 0.00034 30.6 5.4 43 286-328 8-50 (141)
283 3hsr_A HTH-type transcriptiona 64.4 29 0.001 27.4 8.2 50 286-335 40-89 (140)
284 3cdh_A Transcriptional regulat 64.1 34 0.0012 27.4 8.7 50 286-335 47-96 (155)
285 3ffl_A Anaphase-promoting comp 64.1 67 0.0023 27.3 11.8 96 127-223 29-145 (167)
286 3c7j_A Transcriptional regulat 63.7 10 0.00036 33.8 5.8 64 274-339 27-90 (237)
287 3sxy_A Transcriptional regulat 63.7 31 0.001 29.9 8.8 63 275-339 14-76 (218)
288 3g3z_A NMB1585, transcriptiona 63.6 23 0.00077 28.2 7.4 54 287-340 36-92 (145)
289 2v79_A DNA replication protein 63.4 18 0.00062 29.5 6.7 57 294-353 49-107 (135)
290 2fa5_A Transcriptional regulat 63.2 25 0.00087 28.4 7.8 49 287-335 54-102 (162)
291 3nqo_A MARR-family transcripti 63.2 42 0.0014 28.3 9.4 44 293-336 54-97 (189)
292 1xmk_A Double-stranded RNA-spe 62.8 7.5 0.00026 29.0 3.8 44 285-328 14-58 (79)
293 2w25_A Probable transcriptiona 61.9 10 0.00035 31.0 5.0 48 286-333 11-61 (150)
294 3f3x_A Transcriptional regulat 61.6 50 0.0017 26.0 9.2 52 287-339 42-93 (144)
295 1on2_A Transcriptional regulat 61.4 31 0.0011 27.4 7.9 45 293-340 19-63 (142)
296 3nrv_A Putative transcriptiona 61.3 26 0.00089 27.8 7.4 49 287-335 45-93 (148)
297 3bro_A Transcriptional regulat 61.3 35 0.0012 26.7 8.1 40 296-335 50-89 (141)
298 4a0z_A Transcription factor FA 61.2 11 0.00039 32.7 5.4 47 278-324 8-54 (190)
299 3t8r_A Staphylococcus aureus C 61.2 19 0.00064 29.5 6.5 48 295-343 27-74 (143)
300 2bv6_A MGRA, HTH-type transcri 61.0 29 0.001 27.3 7.6 50 286-335 41-90 (142)
301 3df8_A Possible HXLR family tr 60.7 41 0.0014 26.0 8.2 81 280-364 26-107 (111)
302 3e6m_A MARR family transcripti 60.3 37 0.0013 27.6 8.3 54 287-340 58-114 (161)
303 3pqk_A Biofilm growth-associat 59.8 52 0.0018 24.6 8.9 57 281-339 23-79 (102)
304 3ihu_A Transcriptional regulat 59.5 25 0.00084 30.7 7.4 63 275-339 18-80 (222)
305 3f8m_A GNTR-family protein tra 58.8 22 0.00076 31.9 7.1 62 275-341 16-78 (248)
306 1u2w_A CADC repressor, cadmium 58.2 65 0.0022 25.2 9.9 50 280-330 41-90 (122)
307 3lwf_A LIN1550 protein, putati 58.1 27 0.00093 29.3 7.1 45 295-339 43-87 (159)
308 3kp7_A Transcriptional regulat 58.0 28 0.00096 27.9 7.0 49 286-335 42-92 (151)
309 2qvo_A Uncharacterized protein 58.0 19 0.00066 26.9 5.6 44 297-340 31-74 (95)
310 3bdd_A Regulatory protein MARR 57.6 18 0.00062 28.4 5.7 49 287-335 36-84 (142)
311 4e6h_A MRNA 3'-END-processing 57.4 96 0.0033 32.2 12.5 104 123-232 383-502 (679)
312 1y0u_A Arsenical resistance op 56.5 20 0.00068 26.8 5.5 35 295-329 42-76 (96)
313 1sfu_A 34L protein; protein/Z- 56.3 28 0.00095 25.7 5.9 40 290-329 23-62 (75)
314 2wv0_A YVOA, HTH-type transcri 56.3 29 0.00098 31.0 7.4 64 275-340 12-76 (243)
315 1ylf_A RRF2 family protein; st 55.5 24 0.00082 29.0 6.2 47 295-343 29-75 (149)
316 3u64_A Protein TP_0956; tetrat 54.6 92 0.0032 29.0 10.6 83 123-210 204-292 (301)
317 2hs5_A Putative transcriptiona 54.4 65 0.0022 28.4 9.4 63 275-339 30-92 (239)
318 2qww_A Transcriptional regulat 53.9 33 0.0011 27.4 6.8 54 287-340 46-104 (154)
319 3edp_A LIN2111 protein; APC883 53.3 22 0.00074 31.7 6.0 65 275-341 11-76 (236)
320 1r7j_A Conserved hypothetical 52.6 72 0.0025 24.0 8.4 33 297-329 21-53 (95)
321 1pc2_A Mitochondria fission pr 52.3 1E+02 0.0035 25.6 11.4 60 124-187 38-100 (152)
322 3bee_A Putative YFRE protein; 52.0 57 0.0019 24.2 7.4 63 160-230 8-73 (93)
323 3ic7_A Putative transcriptiona 51.7 4.7 0.00016 32.5 1.1 63 275-339 13-76 (126)
324 1uly_A Hypothetical protein PH 51.5 1E+02 0.0036 26.3 10.0 50 278-329 17-66 (192)
325 3boq_A Transcriptional regulat 51.4 40 0.0014 27.1 7.0 49 287-335 52-101 (160)
326 1j5y_A Transcriptional regulat 50.9 26 0.0009 29.8 5.9 50 278-327 17-68 (187)
327 2x4h_A Hypothetical protein SS 50.7 81 0.0028 24.7 8.6 50 287-340 22-71 (139)
328 3deu_A Transcriptional regulat 50.6 89 0.0031 25.5 9.2 47 294-340 66-115 (166)
329 2xm6_A Protein corresponding t 50.4 1.7E+02 0.0059 27.8 21.0 28 39-66 76-107 (490)
330 2hoe_A N-acetylglucosamine kin 50.0 9.7 0.00033 36.4 3.3 56 271-327 6-64 (380)
331 3bwg_A Uncharacterized HTH-typ 49.4 33 0.0011 30.5 6.6 62 276-339 8-70 (239)
332 1hw1_A FADR, fatty acid metabo 49.2 28 0.00096 30.5 6.1 63 275-339 9-72 (239)
333 2cru_A Programmed cell death p 49.1 8.6 0.0003 31.0 2.3 53 279-331 35-87 (118)
334 4hbl_A Transcriptional regulat 49.1 35 0.0012 27.3 6.2 50 286-335 45-94 (149)
335 3l7w_A Putative uncharacterize 49.1 50 0.0017 25.4 6.8 70 301-370 31-102 (108)
336 3eet_A Putative GNTR-family tr 48.9 29 0.001 31.6 6.2 64 275-340 31-95 (272)
337 3jw4_A Transcriptional regulat 48.3 34 0.0012 27.2 6.0 44 295-338 56-99 (148)
338 3fm5_A Transcriptional regulat 47.8 69 0.0024 25.4 7.8 42 295-336 53-94 (150)
339 3u2r_A Regulatory protein MARR 47.7 68 0.0023 26.1 7.9 44 295-338 61-104 (168)
340 3k69_A Putative transcription 47.6 20 0.0007 30.1 4.6 44 295-338 27-70 (162)
341 2pex_A Transcriptional regulat 46.5 29 0.00099 27.8 5.3 48 288-335 53-100 (153)
342 2k9l_A RNA polymerase sigma fa 46.0 18 0.00061 26.5 3.5 26 294-319 46-71 (76)
343 2di3_A Bacterial regulatory pr 46.0 34 0.0012 30.1 6.1 66 275-340 6-74 (239)
344 3bee_A Putative YFRE protein; 45.6 29 0.001 25.8 4.8 29 116-146 43-71 (93)
345 1z91_A Organic hydroperoxide r 45.5 27 0.00091 27.7 4.9 47 289-335 47-93 (147)
346 1r1u_A CZRA, repressor protein 45.3 74 0.0025 24.0 7.3 37 295-331 38-74 (106)
347 2fh0_A Hypothetical 16.0 kDa p 45.1 4 0.00014 30.7 -0.3 49 283-331 7-55 (81)
348 2kfs_A Conserved hypothetical 45.0 16 0.00054 30.6 3.3 38 295-339 30-68 (148)
349 3e4b_A ALGK; tetratricopeptide 44.4 1E+02 0.0035 29.5 9.8 89 123-228 181-279 (452)
350 2l0k_A Stage III sporulation p 43.9 22 0.00074 27.2 3.8 35 283-318 8-42 (93)
351 2p5k_A Arginine repressor; DNA 43.8 54 0.0019 22.0 5.7 51 282-337 5-60 (64)
352 2pi2_A Replication protein A 3 43.8 4.9 0.00017 37.0 0.0 38 295-332 223-261 (270)
353 1r1t_A Transcriptional repress 42.9 97 0.0033 24.2 7.8 47 283-331 48-94 (122)
354 1fse_A GERE; helix-turn-helix 42.7 38 0.0013 23.5 4.8 29 294-322 24-52 (74)
355 2xvc_A ESCRT-III, SSO0910; cel 42.4 31 0.0011 24.1 3.9 32 295-326 24-55 (59)
356 3b73_A PHIH1 repressor-like pr 41.7 34 0.0012 27.0 4.7 52 285-339 16-69 (111)
357 3e6c_C CPRK, cyclic nucleotide 41.4 7 0.00024 34.5 0.7 42 296-341 177-218 (250)
358 4gns_B Protein CSD3, chitin bi 40.9 2.8E+02 0.0097 29.1 13.0 89 133-230 300-400 (754)
359 1zu2_A Mitochondrial import re 40.8 53 0.0018 27.5 6.1 47 174-228 62-119 (158)
360 2lnb_A Z-DNA-binding protein 1 40.7 63 0.0021 24.0 5.6 46 282-327 20-65 (80)
361 4aik_A Transcriptional regulat 40.5 1.4E+02 0.0048 23.9 9.7 41 295-335 45-85 (151)
362 4g26_A Pentatricopeptide repea 40.4 2.7E+02 0.0094 27.2 17.7 165 39-226 27-201 (501)
363 3iuo_A ATP-dependent DNA helic 40.1 25 0.00085 28.1 3.8 33 295-327 31-64 (122)
364 4fhn_B Nucleoporin NUP120; pro 39.7 1.4E+02 0.0047 32.8 10.9 116 123-247 847-979 (1139)
365 2jpc_A SSRB; DNA binding prote 39.3 36 0.0012 22.7 4.1 29 294-322 11-39 (61)
366 2h09_A Transcriptional regulat 39.3 1.5E+02 0.005 23.7 9.9 35 295-329 53-87 (155)
367 3c57_A Two component transcrip 39.2 39 0.0013 25.3 4.6 39 283-323 31-69 (95)
368 1je8_A Nitrate/nitrite respons 39.1 45 0.0016 24.2 4.9 29 294-322 34-62 (82)
369 1x3u_A Transcriptional regulat 38.3 49 0.0017 23.3 4.9 37 284-322 21-57 (79)
370 4b4t_O 26S proteasome regulato 38.1 24 0.00082 34.0 4.0 97 79-184 6-102 (393)
371 1okr_A MECI, methicillin resis 37.7 1.2E+02 0.004 23.1 7.5 65 294-359 22-90 (123)
372 2qlz_A Transcription factor PF 37.2 1E+02 0.0034 27.5 7.7 44 293-339 175-218 (232)
373 3t5v_A Nuclear mRNA export pro 37.1 31 0.0011 32.4 4.4 41 278-318 202-247 (316)
374 3f6v_A Possible transcriptiona 36.6 77 0.0026 26.0 6.4 54 276-331 53-106 (151)
375 2lkp_A Transcriptional regulat 36.6 1.4E+02 0.0047 22.7 8.0 44 284-329 35-78 (119)
376 3o48_A Mitochondria fission 1 36.0 1.2E+02 0.0041 24.7 7.3 51 132-187 57-107 (134)
377 3ryp_A Catabolite gene activat 35.4 38 0.0013 28.3 4.5 41 296-340 167-207 (210)
378 1tc3_C Protein (TC3 transposas 35.2 28 0.00095 21.6 2.8 28 295-322 20-47 (51)
379 2jsc_A Transcriptional regulat 35.1 63 0.0021 25.1 5.4 52 278-331 18-69 (118)
380 2rnj_A Response regulator prot 35.0 43 0.0015 24.7 4.2 29 294-322 42-70 (91)
381 3mv2_A Coatomer subunit alpha; 34.6 2.9E+02 0.01 25.9 10.7 97 123-221 119-228 (325)
382 3iwz_A CAP-like, catabolite ac 34.4 40 0.0014 28.7 4.5 42 296-341 187-228 (230)
383 1ldd_A APC2WHB, anaphase promo 33.8 78 0.0027 23.1 5.2 46 283-328 9-65 (74)
384 1z6r_A MLC protein; transcript 33.7 53 0.0018 31.3 5.7 44 284-327 18-61 (406)
385 2oz6_A Virulence factor regula 33.6 43 0.0015 27.9 4.5 41 296-340 164-204 (207)
386 3hrs_A Metalloregulator SCAR; 33.6 1.5E+02 0.0051 25.6 8.2 54 286-342 10-63 (214)
387 4b8x_A SCO5413, possible MARR- 33.5 1.6E+02 0.0054 23.4 7.9 45 292-336 47-91 (147)
388 3dkw_A DNR protein; CRP-FNR, H 32.7 41 0.0014 28.5 4.3 45 295-343 177-221 (227)
389 3dv8_A Transcriptional regulat 32.5 46 0.0016 28.0 4.6 42 296-341 169-210 (220)
390 1bia_A BIRA bifunctional prote 32.2 55 0.0019 30.5 5.3 44 283-326 6-49 (321)
391 2rpa_A Katanin P60 ATPase-cont 32.1 48 0.0017 24.5 3.9 29 123-151 17-45 (78)
392 2fxa_A Protease production reg 31.8 82 0.0028 27.0 6.1 43 294-336 60-102 (207)
393 2fu4_A Ferric uptake regulatio 31.4 82 0.0028 22.4 5.2 44 285-328 20-70 (83)
394 3hug_A RNA polymerase sigma fa 31.4 65 0.0022 23.7 4.7 28 294-321 51-78 (92)
395 4ev0_A Transcription regulator 31.1 36 0.0012 28.6 3.6 43 295-341 162-204 (216)
396 1z05_A Transcriptional regulat 31.0 60 0.002 31.3 5.6 45 283-327 40-84 (429)
397 3i71_A Ethanolamine utilizatio 30.7 80 0.0027 22.0 4.5 42 287-328 8-50 (68)
398 3la7_A Global nitrogen regulat 30.4 48 0.0016 28.8 4.4 44 296-343 193-236 (243)
399 3k2z_A LEXA repressor; winged 30.3 46 0.0016 28.4 4.2 34 296-329 24-57 (196)
400 2jxn_A Uncharacterized protein 29.9 12 0.0004 30.6 0.1 48 284-331 43-90 (127)
401 2pjp_A Selenocysteine-specific 29.6 74 0.0025 24.9 5.0 33 296-328 20-52 (121)
402 3ulq_B Transcriptional regulat 29.2 73 0.0025 23.7 4.6 38 283-322 33-70 (90)
403 3kcc_A Catabolite gene activat 29.1 1E+02 0.0034 27.0 6.4 41 296-340 217-257 (260)
404 3e97_A Transcriptional regulat 28.8 45 0.0015 28.4 3.9 42 296-341 175-216 (231)
405 2p7v_B Sigma-70, RNA polymeras 28.7 54 0.0018 22.6 3.6 29 294-322 23-51 (68)
406 3d0s_A Transcriptional regulat 28.5 42 0.0014 28.5 3.6 42 296-341 177-218 (227)
407 3kae_A CDC27, possible protein 28.3 2.9E+02 0.01 23.9 8.9 90 127-230 42-144 (242)
408 4h7y_A Dual specificity protei 28.1 1.6E+02 0.0054 24.8 6.8 113 48-187 7-123 (161)
409 2ff4_A Probable regulatory pro 28.0 2.1E+02 0.007 27.1 8.8 73 123-201 176-251 (388)
410 2vn2_A DNAD, chromosome replic 28.0 46 0.0016 26.5 3.5 35 297-331 52-86 (128)
411 1ucr_A Protein DSVD; dissimila 27.8 67 0.0023 23.7 3.9 35 293-327 18-53 (78)
412 1zyb_A Transcription regulator 27.7 54 0.0018 28.2 4.2 44 295-342 185-228 (232)
413 3mkr_B Coatomer subunit alpha; 27.4 3.9E+02 0.013 25.0 12.0 97 123-221 107-219 (320)
414 2k9m_A RNA polymerase sigma fa 27.2 50 0.0017 26.8 3.5 26 294-319 37-62 (130)
415 1nzn_A CGI-135 protein, fissio 26.9 1.6E+02 0.0056 23.6 6.6 38 36-73 72-109 (126)
416 1eij_A Hypothetical protein MT 26.4 35 0.0012 25.5 2.2 47 283-331 9-57 (80)
417 3b02_A Transcriptional regulat 26.1 43 0.0015 27.9 3.2 42 296-341 139-180 (195)
418 2zcw_A TTHA1359, transcription 26.1 51 0.0017 27.5 3.6 42 296-341 146-187 (202)
419 1nd9_A Translation initiation 25.9 54 0.0018 21.0 3.0 25 296-320 2-26 (49)
420 2gau_A Transcriptional regulat 25.8 51 0.0017 28.1 3.7 43 295-341 179-221 (232)
421 1klx_A Cysteine rich protein B 25.7 2.3E+02 0.0079 21.8 7.9 57 123-187 62-126 (138)
422 2wte_A CSA3; antiviral protein 25.7 1.2E+02 0.0041 27.1 6.2 46 293-340 163-208 (244)
423 3txn_A 26S proteasome regulato 25.4 4.5E+02 0.015 25.1 21.6 100 42-146 103-209 (394)
424 2da7_A Zinc finger homeobox pr 24.9 50 0.0017 24.0 2.8 32 295-327 31-62 (71)
425 2fmy_A COOA, carbon monoxide o 24.5 64 0.0022 27.2 4.0 42 296-341 167-209 (220)
426 1y8m_A FIS1; mitochondria, unk 24.1 1.7E+02 0.0058 24.2 6.2 51 132-187 56-106 (144)
427 2k9s_A Arabinose operon regula 24.0 89 0.0031 23.4 4.4 26 295-320 19-44 (107)
428 3t72_q RNA polymerase sigma fa 23.9 97 0.0033 23.6 4.5 28 295-322 38-65 (99)
429 2w48_A Sorbitol operon regulat 23.8 1.3E+02 0.0043 27.7 6.2 39 294-332 19-57 (315)
430 3mkq_A Coatomer beta'-subunit; 23.6 3.2E+02 0.011 27.4 9.9 85 125-225 659-748 (814)
431 2zkz_A Transcriptional repress 23.3 2.3E+02 0.0077 20.9 7.5 36 295-331 40-75 (99)
432 3fx3_A Cyclic nucleotide-bindi 23.3 76 0.0026 27.0 4.3 41 297-342 179-219 (237)
433 2o8x_A Probable RNA polymerase 23.2 76 0.0026 21.5 3.5 28 294-321 29-56 (70)
434 3lsg_A Two-component response 23.0 1.1E+02 0.0039 22.6 4.8 25 296-320 19-43 (103)
435 2gqq_A Leucine-responsive regu 22.9 13 0.00045 30.9 -0.8 47 281-328 13-59 (163)
436 1pc2_A Mitochondria fission pr 22.8 2.7E+02 0.0091 23.0 7.4 36 36-71 69-104 (152)
437 1p4w_A RCSB; solution structur 22.3 1E+02 0.0034 23.4 4.3 29 294-322 47-75 (99)
438 3mkq_A Coatomer beta'-subunit; 22.2 3.2E+02 0.011 27.5 9.5 77 123-226 686-762 (814)
439 3mn2_A Probable ARAC family tr 22.1 1.2E+02 0.0043 22.6 4.9 26 295-320 17-42 (108)
440 1ft9_A Carbon monoxide oxidati 22.1 68 0.0023 27.1 3.7 32 296-327 163-194 (222)
441 2fbk_A Transcriptional regulat 22.1 1E+02 0.0034 25.4 4.7 40 296-335 86-125 (181)
442 1ku3_A Sigma factor SIGA; heli 21.3 88 0.003 21.8 3.6 27 295-321 29-55 (73)
443 3mzy_A RNA polymerase sigma-H 21.2 1.1E+02 0.0037 24.2 4.6 29 293-321 121-149 (164)
444 2qc0_A Uncharacterized protein 21.2 1.6E+02 0.0056 27.8 6.5 45 292-339 309-353 (373)
445 3ri2_A Transcriptional regulat 20.9 3.1E+02 0.01 21.5 11.5 99 268-368 7-112 (123)
446 4e6h_A MRNA 3'-END-processing 20.5 7E+02 0.024 25.5 16.8 51 173-231 485-535 (679)
447 2ra5_A Putative transcriptiona 20.1 25 0.00086 31.5 0.4 63 275-339 18-81 (247)
No 1
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=100.00 E-value=1.4e-75 Score=581.33 Aligned_cols=349 Identities=77% Similarity=1.114 Sum_probs=302.2
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHH
Q psy4083 26 EEENHDEEVKAKEQNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECI 105 (374)
Q Consensus 26 ~~~~~~~~~k~~e~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i 105 (374)
++++++...+.+|++|++|+++|++.|+++++.++++.++++++.++|++++|+|++++|.++.+|++.+.++++|+++|
T Consensus 7 ~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~ 86 (394)
T 3txn_A 7 GAENDEERIRIKEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCI 86 (394)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred cCcCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 45667888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy4083 106 EWAKEERRTFLRQSLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSAR 185 (374)
Q Consensus 106 ~~~~~~~r~~lr~~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~ 185 (374)
+||++++|+|||++++.|||++|++.|+|++|++++.++++++++.||+.+++|++++|+++|+..+|+++++++|++|+
T Consensus 87 ~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 87 EWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCCChhhhHHHHHHHHHHhhcccccHHHHHHHHHHhccCcCcccchhHHHHHHHHHHHHHhcCCchhHHHHHH--
Q psy4083 186 TTANSIYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEGFSTVDHNHAMMSLKYMLLSKIMLNTPEDVNQILS-- 263 (374)
Q Consensus 186 ~~~~~~~~~~~~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~f~~~~~~~~~~~LkY~vL~~iL~~~~~~v~~ll~-- 263 (374)
++++++++||+++|.|++|+|++|++.+|||++|+++|+|||++|+++|++++.++++|++||+||++++.++.+++.
T Consensus 167 ~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~ 246 (394)
T 3txn_A 167 TTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGK 246 (394)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSH
T ss_pred hhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhccc
Confidence 999888899999999999999999945999999999999999999999999999999999999999988655433221
Q ss_pred -------------------------------------HHhcChHHHhhHHHHHHHHHHHHHHHhhccccceeHHHHHhHh
Q psy4083 264 -------------------------------------ELEDDTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSI 306 (374)
Q Consensus 264 -------------------------------------~l~~D~~l~~h~~~L~~~ire~~l~~~~~pYs~I~l~~lA~~l 306 (374)
.+..|+|+++|+..|+++||++|++++++||++|++++||+.|
T Consensus 247 ~~~~~~~pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~~~L~~i~~pYsrIsl~~iA~~l 326 (394)
T 3txn_A 247 LAITYSGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHVAESI 326 (394)
T ss_dssp HHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHHHHH
T ss_pred cccccCCccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhHhhceeeHHHHHHHH
Confidence 4788999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHhhcCccceeecCCCCeEEEecCCcchHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy4083 307 KLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFEGAEIDKTYEKALETITSMGKVIDTLYQKAKKLT 374 (374)
Q Consensus 307 ~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~~~~~~~~~~y~~~~~~i~~l~~~vd~l~~~~~~~~ 374 (374)
|+|++++|++|++||.+|+|+|+|||++|+|+++++++++.+|+++++++++|+++||.||+||++++
T Consensus 327 ~ls~~evE~~L~~lI~dg~I~a~IDq~~giv~~~~~~~r~~~y~~ale~l~~ls~vVd~L~~~~~~~~ 394 (394)
T 3txn_A 327 QLPMPQVEKKLSQMILDKKFSGILDQGEGVLIVFEETPVDKTYERVLETIQSMGKVVDTLYQKAKKLS 394 (394)
T ss_dssp TCCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCC--------------------------------
T ss_pred CcCHHHHHHHHHHHHHCCCeeEEEcCCCCEEEECCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999874
No 2
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-51 Score=412.69 Aligned_cols=332 Identities=12% Similarity=0.145 Sum_probs=269.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccch-hhhHHHHHHHH
Q psy4083 27 EENHDEEVKAKEQNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRT-GMEVALCKECI 105 (374)
Q Consensus 27 ~~~~~~~~k~~e~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~-~~~~~l~~e~i 105 (374)
+++..|+++... .++++|++.|+|+.+++++..+.+.++++ |++++++|+.++++++.+|+.. ..++.++ +++
T Consensus 49 ~~d~~s~~r~l~----~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~~~d~~~~~~~i-~~l 122 (445)
T 4b4t_P 49 ASDLASSKEVLA----KIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSKSLDLNTRISVI-ETI 122 (445)
T ss_dssp SCSTTTCHHHHH----HHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHCTTHHHHHHHHH-HCC
T ss_pred ccchhhHHHHHH----HHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCCchhHHHHHHHH-HHH
Confidence 456788886655 45999999999999999999999999999 9999999999999998877532 3344444 666
Q ss_pred HHHHHhhHHHH---HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy4083 106 EWAKEERRTFL---RQSLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLT 182 (374)
Q Consensus 106 ~~~~~~~r~~l---r~~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~ 182 (374)
++++ ++|+|| |++++.+||++|++.|+|.+|.++++++..|....+++..++|+++.++|+|+..+|+++++.+++
T Consensus 123 ~~vt-e~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ 201 (445)
T 4b4t_P 123 RVVT-ENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSR 201 (445)
T ss_dssp SSSS-SCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHh-ccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6666 789999 999999999999999999999888888888887789999999999999999999999999999999
Q ss_pred HHHhhccccCCChhhhHHHHHHHHHHhhcccccHHHHHHHHHHhccCcCcccch-hHHHHHHHHHHHHHhcCCch-----
Q psy4083 183 SARTTANSIYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEGFSTVDHN-HAMMSLKYMLLSKIMLNTPE----- 256 (374)
Q Consensus 183 ~a~~~~~~~~~~~~~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~f~~~~~~-~~~~~LkY~vL~~iL~~~~~----- 256 (374)
++++...+.+++|.+++.+++|+|++|+ ++++|.+|+++|+|+|.+|+..+++ .+..+|+|+++|.||++...
T Consensus 202 ki~~~~~~~~~~~~lk~~~~~~~~~~~~-~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~l 280 (445)
T 4b4t_P 202 KILKKTFKNPKYESLKLEYYNLLVKISL-HKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDL 280 (445)
T ss_dssp HHHHHHHHSSCCHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHH
T ss_pred HHHHhhcccCCcHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 9987666788999999999999999999 9999999999999999999998885 57789999999999985421
Q ss_pred -----------h---HHHHHH-------------------HHhcChHH------HhhHHHHHHHHHHHHHHHhhccccce
Q psy4083 257 -----------D---VNQILS-------------------ELEDDTIV------KAHIGTLYDNMLEQNLCRIIEPYSRV 297 (374)
Q Consensus 257 -----------~---v~~ll~-------------------~l~~D~~l------~~h~~~L~~~ire~~l~~~~~pYs~I 297 (374)
+ +..++. .+..|+++ ..|+..|++++++||++++++||++|
T Consensus 281 l~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~L~~~v~ehnl~~i~k~Ys~I 360 (445)
T 4b4t_P 281 IHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHHWEDLQKRVIEHNLRVISEYYSRI 360 (445)
T ss_dssp HHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred HHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHhcee
Confidence 1 122222 35556655 78999999999999999999999999
Q ss_pred eHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEEecCCcchHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy4083 298 EVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFEGAEIDKTYEKALETITSMGKVIDTLYQKAKKL 373 (374)
Q Consensus 298 ~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~~~~~~~~~~y~~~~~~i~~l~~~vd~l~~~~~~~ 373 (374)
++++||+.||+|++++|+.|++||.+|+|+|+|||++|+|+|..+... .+.+++|+..|++|++...++
T Consensus 361 ~l~~la~lL~l~~~evE~~ls~mI~~g~i~akIDq~~giV~F~~~~~~-------~~~l~~W~~~i~~l~~~v~k~ 429 (445)
T 4b4t_P 361 TLLRLNELLDLTESQTETYISDLVNQGIIYAKVNRPAKIVNFEKPKNS-------SQLLNEWSHNVDELLEHIETI 429 (445)
T ss_dssp EHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCEEETTTTEEEC----------------------------------
T ss_pred eHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEEEcCCCCEEEECCCCCh-------HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999766533 467889999999988766543
No 3
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-46 Score=370.23 Aligned_cols=342 Identities=47% Similarity=0.770 Sum_probs=284.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHH
Q psy4083 31 DEEVKAKEQNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKE 110 (374)
Q Consensus 31 ~~~~k~~e~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~ 110 (374)
....+.+++++..|+.+|++.|+|+++.+++...+++++++++++++++++.+++.+...++..+..++++.+++.|+..
T Consensus 48 ~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 127 (434)
T 4b4t_Q 48 DKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKR 127 (434)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 44567888999999999999999999999999999999999999999999999999999888888889999999999987
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccc
Q psy4083 111 ERRTFLRQSLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANS 190 (374)
Q Consensus 111 ~~r~~lr~~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~ 190 (374)
.++.++++++..+||.+|.+.|+|++|++.+.+++.++...+++..++++++.++++|...+|+.+|+.++++|.++.++
T Consensus 128 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 207 (434)
T 4b4t_Q 128 EKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANS 207 (434)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhc
Confidence 78888888888899999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred cCCChhhhHHHHHHHHHHhhcccccHHHHHHHHHHhccCcCcccc----hhHHHHHHHHHHHHHhcCCchhH--------
Q psy4083 191 IYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEGFSTVDH----NHAMMSLKYMLLSKIMLNTPEDV-------- 258 (374)
Q Consensus 191 ~~~~~~~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~f~~~~~----~~~~~~LkY~vL~~iL~~~~~~v-------- 258 (374)
+.++|.+++.++.++|.++. ++++|.+|+.+|.++|++|+..+. +.+..+++|+++|.++.+...+.
T Consensus 208 ~~~~~~~~~~~~~~~g~~~~-~~~~y~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 286 (434)
T 4b4t_Q 208 IYCPTQTVAELDLMSGILHC-EDKDYKTAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKY 286 (434)
T ss_dssp SCCCHHHHHHHHHHHHHHTT-SSSCHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSS
T ss_pred CCCchHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhccchhHHHhHHHHHH
Confidence 77788999999999999999 999999999999999999877654 56788999999999988653211
Q ss_pred -------------HHHHH-------------------HHhcChHHHhhHHHHHHHHHHHHHHHhhccccceeHHHHHhHh
Q psy4083 259 -------------NQILS-------------------ELEDDTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSI 306 (374)
Q Consensus 259 -------------~~ll~-------------------~l~~D~~l~~h~~~L~~~ire~~l~~~~~pYs~I~l~~lA~~l 306 (374)
..++. .+..|++++.|+..+.+.++++++.++++||++|++++||+.|
T Consensus 287 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~y~~i~l~~la~~l 366 (434)
T 4b4t_Q 287 TKETYQSRGIDAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKII 366 (434)
T ss_dssp SSTTCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHSSCSCEEHHHHHHHH
T ss_pred HHHHhcchhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHh
Confidence 11111 6889999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHhhcCccceeecCCCCeEEEecCCcchHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy4083 307 KLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFEGAEIDKTYEKALETITSMGKVIDTLYQKAKKL 373 (374)
Q Consensus 307 ~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~~~~~~~~~~y~~~~~~i~~l~~~vd~l~~~~~~~ 373 (374)
|++++++|++|++||.+|+|+|+||+++|+|++++++.++..|+++++.+++++++||+|++||+.+
T Consensus 367 ~~~~~~~E~~l~~lI~~~~i~a~id~~~g~v~~~~~~~~~~~~~~~l~~~~~l~~~vd~L~~ka~~l 433 (434)
T 4b4t_Q 367 GLDTQQVEGKLSQMILDKIFYGVLDQGNGWLYVYETPNQDATYDSALELVGQLNKVVDQLFEKASVL 433 (434)
T ss_dssp TCCHHHHHHHHHHHHHHTSSCCEEETTTTEEECC---------------------------------
T ss_pred CcCHHHHHHHHHHHHhCCCcceecccccCeEeeCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999875
No 4
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-43 Score=352.24 Aligned_cols=324 Identities=12% Similarity=0.145 Sum_probs=236.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhh--hhhhHHHHHHHHHHHHHh----hccccchhhhHHHH
Q psy4083 28 ENHDEEVKAKEQNILQLGEKYKQEGKAIELAELIKKTRPFLS--QISKAKAAKLVRSLVDFF----LDLETRTGMEVALC 101 (374)
Q Consensus 28 ~~~~~~~k~~e~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~--~~~k~~~~k~i~~ild~~----~~~~~~~~~~~~l~ 101 (374)
+..+|.++..-++ .-+.+.......+...+....+ ..++...+...+..+... +.++...+.+++.+
T Consensus 41 ~~~~~~~~~l~~~-------ik~~~ma~~y~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~n~~~l~~l 113 (429)
T 4b4t_R 41 EQRKEAAEFVLAK-------IKEEEMAPYYKYLCEEYLVNNGQSDLEHDEKSDSLNEWIKFDQELYNELCKKNESKIKEL 113 (429)
T ss_dssp -CHHHHHHHHHHH-------HHHTCCHHHHHHHHHHSCCCCSCCSSCSHHHHHHHHHTTTTCCSSCTTTTCCSSCCHHHH
T ss_pred hhHHHHHHHHHHH-------HHHhCCHHHHHHHHHHHhhcccchhhhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 3446666554433 3344554443333333333222 222344444444433222 22233346678888
Q ss_pred HHHHHHHHHhh---HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHH
Q psy4083 102 KECIEWAKEER---RTFLRQSLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSR 178 (374)
Q Consensus 102 ~e~i~~~~~~~---r~~lr~~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~ 178 (374)
.+.++|+.+++ ..|.+... +||++|++.||+++|++++.+++.. ..+..+++++++.++|+++..+|+.+++
T Consensus 114 ~~~~~~~~~~~~~e~e~~~~~~--~la~~~~~~Gd~~~A~~~~~~~~~~---~~~~~~kid~~l~~irl~l~~~d~~~~~ 188 (429)
T 4b4t_R 114 NEKIQKLEEDDEGELEQAQAWI--NLGEYYAQIGDKDNAEKTLGKSLSK---AISTGAKIDVMLTIARLGFFYNDQLYVK 188 (429)
T ss_dssp HHHHHHHHHCCSCCCCCSSCCH--HHHHHHHHHCCCTTHHHHHHHHHHH---HTCCCSHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHhhccccHHHHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHh---cCChHHHHHHHHHHHHHHHHhccHHHHH
Confidence 88899886432 33566665 8999999999999998888877532 2345799999999999999999999999
Q ss_pred HHHHHHHhhccccCCChhhhHHHHHHHHHHhhcccccHHHHHHHHHHhccCcCcccchhHHHHHHHHHHHHHhcCCchh-
Q psy4083 179 ASLTSARTTANSIYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEGFSTVDHNHAMMSLKYMLLSKIMLNTPED- 257 (374)
Q Consensus 179 ~~~~~a~~~~~~~~~~~~~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~f~~~~~~~~~~~LkY~vL~~iL~~~~~~- 257 (374)
.++.+++..... .++|.++++++.|+|++++ +.|+|++|+++|+|+|.+|+..+.+.+.++++|++||++++.+..+
T Consensus 189 ~~~~ka~~~~~~-~~d~~~~~~lk~~~gl~~l-~~r~f~~Aa~~f~e~~~t~~~~e~~~~~~~~~y~~l~al~~~~r~~l 266 (429)
T 4b4t_R 189 EKLEAVNSMIEK-GGDWERRNRYKTYYGIHCL-AVRNFKEAAKLLVDSLATFTSIELTSYESIATYASVTGLFTLERTDL 266 (429)
T ss_dssp HHHHHHHHHHTT-CCCTHHHHHHHHHHHHGGG-GTSCHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhhhc-CCCHHHHHHHHHHHHHHHH-HhChHHHHHHHHHHHhccCCccchhhHHHHHHHHHHHHHhcCCHHHH
Confidence 999999988754 4899999999999999999 9999999999999999999999999999999999999999866321
Q ss_pred -------------------HH---HHHH--------------------HHhcChHHHhhHHHHHHHHHHHHHHHhhcccc
Q psy4083 258 -------------------VN---QILS--------------------ELEDDTIVKAHIGTLYDNMLEQNLCRIIEPYS 295 (374)
Q Consensus 258 -------------------v~---~ll~--------------------~l~~D~~l~~h~~~L~~~ire~~l~~~~~pYs 295 (374)
++ +++. .+..|+|+++|++.|+++||++|+.++++||+
T Consensus 267 ~~~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~d~~l~~h~~~l~~~ir~~~l~q~~~~Ys 346 (429)
T 4b4t_R 267 KSKVIDSPELLSLISTTAALQSISSLTISLYASDYASYFPYLLETYANVLIPCKYLNRHADFFVREMRRKVYAQLLESYK 346 (429)
T ss_dssp HHSSSSSHHHHHGGGSHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHSTTTTTCTTSTTTHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHhcCHHHHhhccCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 11 1221 47789999999999999999999999999999
Q ss_pred ceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEEecCCcchHHHHHHHH-------HHHHHHHHHHH
Q psy4083 296 RVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFEGAEIDKTYEKALE-------TITSMGKVIDT 365 (374)
Q Consensus 296 ~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~~~~~~~~~~y~~~~~-------~i~~l~~~vd~ 365 (374)
+|+|++||+.||+|++++|++|++||.+|+|+|+||+++|+|++++|++++.+|+++++ .+++++++||.
T Consensus 347 ~I~l~~mA~~l~~s~~~~E~~L~~lI~~g~l~akID~~~giv~~~~~d~~~~~y~~~i~~gd~Ll~riqkl~~~i~l 423 (429)
T 4b4t_R 347 TLSLKSMASAFGVSVAFLDNDLGKFIPNKQLNCVIDRVNGIVETNRPDNKNAQYHLLVKQGDGLLTKLQKYGAAVRL 423 (429)
T ss_dssp EEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECC-------------------------------
T ss_pred eeeHHHHHHHhCcCHHHHHHHHHHHHHcCCeEEEEcCCCCEEEECCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999998875 46777777753
No 5
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.6e-18 Score=172.31 Aligned_cols=244 Identities=16% Similarity=0.154 Sum_probs=168.1
Q ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHhcc-----------chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcccc-C
Q psy4083 125 IALYFDTGEYTEALKLSSSLLKELKKLDD-----------KNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSI-Y 192 (374)
Q Consensus 125 a~~~~~~g~~~~Al~~~~~ll~el~~~dd-----------~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~-~ 192 (374)
.....+..+.++|++.+.++...+...+. ....+.+.+...++|+..+|.+.++.++.+++...+.. .
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~ 162 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS 162 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence 33456678999998877766544443221 23567777888999999999999999999998755332 2
Q ss_pred CChhhhHHHHHHHHHHhhcccccHHHHHHHHHHhccCcCccc--chhHHHHHHHHHH-HHHhcCCc--h-----------
Q psy4083 193 CPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEGFSTVD--HNHAMMSLKYMLL-SKIMLNTP--E----------- 256 (374)
Q Consensus 193 ~~~~~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~f~~~~--~~~~~~~LkY~vL-~~iL~~~~--~----------- 256 (374)
.+|++++.++.+.|.++. ..++|..++.+++..+.+++..+ ++.....+.|.++ |.+++..- |
T Consensus 163 ~~~~v~~~~y~~~~~~~~-~~~~~a~~y~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~all~~~i~~f~eLL~~p~i~~ 241 (393)
T 4b4t_O 163 IPLRITNSFYSTNSQYFK-FKNDFNSFYYTSLLYLSTLEPSTSITLAERQQLAYDLSISALLGDKIYNFGELLHHPIMET 241 (393)
T ss_dssp SSSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHTTSSSCSHHHHHHHHHHHHHHHHHCCSSCSTHHHHHSCCTTS
T ss_pred ccHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHhhccccccCCHHHHHHHHHHHHHHHHcCCCCCChHHHhCChHHHH
Confidence 467899999999999999 99999999999999999888543 3444455555554 45554321 1
Q ss_pred --------hHHHHHH----------------HHhcChHHHhhHHHHHHHHHHHHHHHhh--ccccceeHHHHHhHhCCCh
Q psy4083 257 --------DVNQILS----------------ELEDDTIVKAHIGTLYDNMLEQNLCRII--EPYSRVEVGFIAKSIKLDE 310 (374)
Q Consensus 257 --------~v~~ll~----------------~l~~D~~l~~h~~~L~~~ire~~l~~~~--~pYs~I~l~~lA~~l~ls~ 310 (374)
-+.+++. .....|++..|...+.+.+|..++..+. .||++|+++.||+.+|+|+
T Consensus 242 L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~~~~~~l~~~~~~l~~kirll~l~~l~~~~~~~~i~f~~ia~~l~i~~ 321 (393)
T 4b4t_O 242 IVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQISKIPILAQHESFLRQKICLMTLIETVFVKNIRMLSFEDISKATHLPK 321 (393)
T ss_dssp SCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHHHHHSHHHHHHHHHHHHHHHHHHHHHHHCSSSCCCEEHHHHHHHHTCCH
T ss_pred hhcCCchHHHHHHHHHHhcCCHHHHHHHHHHhhhhCcchhhhHHHHHHHHHHHHHHHHhccCCCCcCcHHHHHHHhCcCH
Confidence 0223333 2446789999999999999999998876 6689999999999999999
Q ss_pred HHHHHHHHHHhhcCccceeecCCCCeEEEecCCcch---HHHHHHHHHHHHHHHHHHHHHHH
Q psy4083 311 LAVEKKLSQMILDKKFHGILDQGEKVLIVFEGAEID---KTYEKALETITSMGKVIDTLYQK 369 (374)
Q Consensus 311 ~~vE~~L~~lI~dgkl~akID~~~giv~~~~~~~~~---~~y~~~~~~i~~l~~~vd~l~~~ 369 (374)
++||..++++|.+|.|.|+|||++|+|++....+|. ..+....+.+..|...|.++.+.
T Consensus 322 ~evE~lli~aI~~glI~GkIDQv~~~v~v~~~~pR~~~~~q~~~l~~~L~~W~~~v~~l~~~ 383 (393)
T 4b4t_O 322 DNVEHLVMRAISLGLLKGSIDQVNELVTISWVQPRIISGDQITKMKDRLVEWNDQVEKLGKK 383 (393)
T ss_dssp HHHHHHHHHHHHHSCSSSCEETTTTEECC---------------------------------
T ss_pred HHHHHHHHHHHHcCCEEEEEcCCCCEEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999997665543 34455567899999999888754
No 6
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=99.71 E-value=4.6e-18 Score=132.59 Aligned_cols=72 Identities=19% Similarity=0.267 Sum_probs=68.7
Q ss_pred hhHHHHHHHHHHHHHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEEecCCc
Q psy4083 273 AHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFEGAE 344 (374)
Q Consensus 273 ~h~~~L~~~ire~~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~~~~~~ 344 (374)
.|+..|.+++.++|++.+.+||++|++++||+.||+|++++|+.|++||.+|+|+|+|||++|+|+|.++++
T Consensus 7 ~~~~~L~~~v~E~nl~~is~~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l~akIDq~~g~V~f~~~e~ 78 (84)
T 1ufm_A 7 GGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETREA 78 (84)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCSSC
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCeeeHHHHHHHHCcCHHHHHHHHHHHHhCCcEEEEEeCCCCEEEeCCccc
Confidence 578889999999999999999999999999999999999999999999999999999999999999977654
No 7
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=99.64 E-value=2e-15 Score=136.92 Aligned_cols=146 Identities=17% Similarity=0.246 Sum_probs=124.7
Q ss_pred hhHHHHHHHHHHhhcccccHHHHHHHHHHhccCcCcccchhHHHHHHHHHHHHHhcCC-c-hh---------HHHHHH--
Q psy4083 197 MQAALDLQSGILHAADEQDFKTAFSYFYEAFEGFSTVDHNHAMMSLKYMLLSKIMLNT-P-ED---------VNQILS-- 263 (374)
Q Consensus 197 ~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~f~~~~~~~~~~~LkY~vL~~iL~~~-~-~~---------v~~ll~-- 263 (374)
-+.+++-+.|++++ .++||.+|...|.+||..++..+...+..+|+|++.++|+.+. | ++ ..++..
T Consensus 12 q~v~Y~YYlGr~~~-~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~~~ll~~~~~~~y~~L~~Av 90 (203)
T 3t5x_A 12 QRVTYKYYVGRKAM-FDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPTVELLKKYHLMQFAEVTRAV 90 (203)
T ss_dssp HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEECHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCCHHHhhhCchhHHHHHHHHH
Confidence 45688999999999 9999999999999999999987778899999999999999977 2 11 112222
Q ss_pred ------------HHhcChHHHhhHHHHHHHHHHHHHHHhhc------cccceeHHHHHhHhC------CChHHHHHHHHH
Q psy4083 264 ------------ELEDDTIVKAHIGTLYDNMLEQNLCRIIE------PYSRVEVGFIAKSIK------LDELAVEKKLSQ 319 (374)
Q Consensus 264 ------------~l~~D~~l~~h~~~L~~~ire~~l~~~~~------pYs~I~l~~lA~~l~------ls~~~vE~~L~~ 319 (374)
+-..|.|++.++-.+..++|..+++.+++ +|++|+++.++.+++ ++.+++|-.|+.
T Consensus 91 r~Gdl~~f~~~l~~~~~~f~~~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~~~~~~~~evE~ila~ 170 (203)
T 3t5x_A 91 SEGNLLLLHEALAKHEAFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQVEDVDIDEVQCILAN 170 (203)
T ss_dssp HHTCHHHHHHHHHHTHHHHHHHTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTTCTTCCHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHhHHHHHHCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 23457888888888899999999999887 899999999999995 489999999999
Q ss_pred HhhcCccceeecCCCCeEEEecCC
Q psy4083 320 MILDKKFHGILDQGEKVLIVFEGA 343 (374)
Q Consensus 320 lI~dgkl~akID~~~giv~~~~~~ 343 (374)
||.+|.|.|.||+.+|++++.+.+
T Consensus 171 lI~~G~Ikg~I~~~~~~lVlsk~~ 194 (203)
T 3t5x_A 171 LIYMGHVKGYISHQHQKLVVSKQN 194 (203)
T ss_dssp HHHHTSSCEEEETTTTEEEECSSC
T ss_pred HHHcCceEEEEcccccEEEECCCC
Confidence 999999999999999999885543
No 8
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.8e-13 Score=138.79 Aligned_cols=183 Identities=15% Similarity=0.170 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHHHHHHHHhhcccccHHHHHHHHHHhccCcCc--ccc
Q psy4083 158 VEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEGFST--VDH 235 (374)
Q Consensus 158 lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~f~~--~~~ 235 (374)
--++-+.+|.|+..+++..|..+..++. .+... .+...+.++.-|.|++++ .+++|.+|..+|..||..-.. ...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~-fP~~~-~sn~q~~rY~YY~GRI~a-~q~~Y~eA~~~L~~A~rkap~~~~a~ 307 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE-YPHTD-VSSSLEARYFFYLSKINA-IQLDYSTANEYIIAAIRKAPHNSKSL 307 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC-SCTTT-SCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHTSSCSCSSSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc-CCccc-CCHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCcchhhh
Confidence 3355577899999999999999998874 22111 234456899999999999 999999999999999976432 223
Q ss_pred hhHHHHHHHHHHHHHhcCC-ch-------h----HH---HHHH--------------HHhcChHHH----hhHHHHHHHH
Q psy4083 236 NHAMMSLKYMLLSKIMLNT-PE-------D----VN---QILS--------------ELEDDTIVK----AHIGTLYDNM 282 (374)
Q Consensus 236 ~~~~~~LkY~vL~~iL~~~-~~-------~----v~---~ll~--------------~l~~D~~l~----~h~~~L~~~i 282 (374)
..+..++||+|+|.+|.+. |. . +. +|.. +-..+.|.+ .-+..+...+
T Consensus 308 gfr~~a~K~lI~V~LLlG~iP~r~lf~q~~l~~~L~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgty~LI~rLr~~v 387 (523)
T 4b4t_S 308 GFLQQSNKLHCCIQLLMGDIPELSFFHQSNMQKSLLPYYHLTKAVKLGDLKKFTSTITKYKQLLLKDDTYQLCVRLRSNV 387 (523)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCHHHHTTTSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHhHHhhcCCCCChHHhhchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcceeccCChhHHHHHHHHHH
Confidence 5678999999999999866 31 0 11 1111 111122322 2367778899
Q ss_pred HHHHHHHhhccccceeHHHHHhHhCCC-hHHHHHHHHHHhhcCccceeecCCCCeEEEecCC
Q psy4083 283 LEQNLCRIIEPYSRVEVGFIAKSIKLD-ELAVEKKLSQMILDKKFHGILDQGEKVLIVFEGA 343 (374)
Q Consensus 283 re~~l~~~~~pYs~I~l~~lA~~l~ls-~~~vE~~L~~lI~dgkl~akID~~~giv~~~~~~ 343 (374)
+.++++++..+|++|++..+|..++++ ++++|..+++||.+|.|.|.||+.+|+|++.+.+
T Consensus 388 ir~~irkis~~YsrIsL~dIa~kL~L~s~eeaE~iVAkmI~dG~I~A~Idh~~g~v~ske~~ 449 (523)
T 4b4t_S 388 IKTGIRIISLTYKKISLRDICLKLNLDSEQTVEYMVSRAIRDGVIEAKINHEDGFIETTELL 449 (523)
T ss_dssp HHHHHHHSCCCSSEECHHHHHHHHHHHHSSCHHHHHHHHHHHTSSCCEECTTTCCEECCSSS
T ss_pred HHHHHHHHHHHHhcccHHHHHHHhCCCCHHHHHHHHHHHHHcCCceEEEecCCCEEEeCccc
Confidence 999999999999999999999999995 6789999999999999999999999999996544
No 9
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=99.35 E-value=1.1e-10 Score=117.44 Aligned_cols=186 Identities=11% Similarity=0.118 Sum_probs=139.0
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcc---ccCCChhhhHHHHHHHHHHhhcccccHHHHHHHHHHhccC--c
Q psy4083 156 LLVEVLLLESKTYHALSNLSTSRASLTSARTTAN---SIYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEG--F 230 (374)
Q Consensus 156 ~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~---~~~~~~~~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~--f 230 (374)
..+-+.-...++|++.++..-++..+........ ...-+..-+.+++-|.|++++ .+++|.+|..+|.+||.. .
T Consensus 174 ~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~-~~~~y~~A~~~L~~A~~~lcp 252 (455)
T 3t5v_B 174 ILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYL-LNSQVHNAFVQFNEAFQSLLN 252 (455)
T ss_dssp HHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHH-HHccHHHHHHHHHHHHHhcCC
Confidence 4455566778999999999999988866544311 000122356689999999999 999999999999999987 4
Q ss_pred Cccc----chhHHHHHHHHHHHHHhcCC-ch----------hHH----HHHH--------------HHhcChHHHhhH-H
Q psy4083 231 STVD----HNHAMMSLKYMLLSKIMLNT-PE----------DVN----QILS--------------ELEDDTIVKAHI-G 276 (374)
Q Consensus 231 ~~~~----~~~~~~~LkY~vL~~iL~~~-~~----------~v~----~ll~--------------~l~~D~~l~~h~-~ 276 (374)
...+ ...+..+|+|+|.+.|+.+. |. .+. +++. +-..+.|++.++ -
T Consensus 253 ~~~~~~~~~~n~~~ILkyLIpv~LLlG~~P~~~ll~k~~~~~L~~~y~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~gily 332 (455)
T 3t5v_B 253 LPLTNQAITRNGTRILNYMIPTGLILGKMVKWGPLRPFLSQETIDNWSVLYKHVRYGNIQGVSLWLRQNERHLCARQLLI 332 (455)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHTTCCBCHHHHGGGSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCHH
T ss_pred ccccchhhhhHHHHHHHHHHHHHHHcCCCCCHHHHcccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHcCCHH
Confidence 4432 35677899999999999975 21 111 2222 223456777776 5
Q ss_pred HHHHHHHHH--------HHHHhhccc--cceeHHHHHhHhC---------------------CChHHHHHHHHHHhhcCc
Q psy4083 277 TLYDNMLEQ--------NLCRIIEPY--SRVEVGFIAKSIK---------------------LDELAVEKKLSQMILDKK 325 (374)
Q Consensus 277 ~L~~~ire~--------~l~~~~~pY--s~I~l~~lA~~l~---------------------ls~~~vE~~L~~lI~dgk 325 (374)
.+..++|.. .+..+.-|| ++|+++.++.+++ ++.+++|-.|+.||.+|.
T Consensus 333 ~LlerLr~~v~RnLirkv~~~~~~~~~~srI~l~~i~~aL~~~~~~~~~~~~~~~~~~~~~~~~~devEcIlA~LI~~G~ 412 (455)
T 3t5v_B 333 VLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSLIERVLQLSIGPTFEDPGAQEITIYNGIHSPKNVENVLVTLINLGL 412 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEHHHHHHHHHHHHCCCTTSTTCCCCCTTTSSCCSSCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHHhhccCccccccccccccccccCCCHHHHHHHHHHHHHcCC
Confidence 565555554 333356778 8999999999997 578999999999999999
Q ss_pred cceeecCCCCeEEEecC
Q psy4083 326 FHGILDQGEKVLIVFEG 342 (374)
Q Consensus 326 l~akID~~~giv~~~~~ 342 (374)
|.|.||+.+|++++.+.
T Consensus 413 IkGyIsh~~~~lVlSK~ 429 (455)
T 3t5v_B 413 LRANCFPQLQLCVVKKT 429 (455)
T ss_dssp CCEEEETTTTEEEECCC
T ss_pred eEEEEecCCCEEEECCC
Confidence 99999999999999766
No 10
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.58 E-value=2.3e-05 Score=71.52 Aligned_cols=112 Identities=15% Similarity=0.102 Sum_probs=86.9
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHH
Q psy4083 122 ARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAAL 201 (374)
Q Consensus 122 ~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i 201 (374)
..++.++...|++++|+..+.+.+.......+.......+.....++...+++..+..++..+...... ..++......
T Consensus 187 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~ 265 (338)
T 3ro2_A 187 GNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ-LKDRAVEAQS 265 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hcchhHHHHH
Confidence 368888999999999998888888766666666667778888888899999999999998888766432 2456666677
Q ss_pred HHHHHHHhhcccccHHHHHHHHHHhccCcCcccc
Q psy4083 202 DLQSGILHAADEQDFKTAFSYFYEAFEGFSTVDH 235 (374)
Q Consensus 202 ~~~~G~~~~~~~rdy~~A~~~F~eaf~~f~~~~~ 235 (374)
....|.++. ..++|..|..+|-++.+.+...++
T Consensus 266 ~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~~~~ 298 (338)
T 3ro2_A 266 CYSLGNTYT-LLQDYEKAIDYHLKHLAIAQELKD 298 (338)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHH-HhcCHHHHHHHHHHHHHHHHhcCC
Confidence 777788888 889999999998888665554444
No 11
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.55 E-value=1.1e-05 Score=73.69 Aligned_cols=192 Identities=14% Similarity=0.093 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHhCC--------------------HHHHHHHHHHHHhhhhhhhhH-HHHHHHHHHHHHhhccccchhhhH
Q psy4083 40 NILQLGEKYKQEGK--------------------AIELAELIKKTRPFLSQISKA-KAAKLVRSLVDFFLDLETRTGMEV 98 (374)
Q Consensus 40 ~~~~l~~~~~~~~~--------------------~~~l~~~l~~l~~~~~~~~k~-~~~k~i~~ild~~~~~~~~~~~~~ 98 (374)
+...++.++...|+ ++...+.+..........+.. ........+-..... .+..+.-+
T Consensus 125 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~ 203 (338)
T 3ro2_A 125 ALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYL-LGNFRDAV 203 (338)
T ss_dssp HHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-HTCHHHHH
T ss_pred HHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-hCCHHHHH
Confidence 66778999999999 888888777766554433211 111222222221111 12234445
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHH
Q psy4083 99 ALCKECIEWAKEERRTFLRQSLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSR 178 (374)
Q Consensus 99 ~l~~e~i~~~~~~~r~~lr~~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~ 178 (374)
..+.+.++.....+........-..+|.++...|++++|++.+.+.+.......+.......+.....++...|++.++.
T Consensus 204 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 283 (338)
T 3ro2_A 204 IAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAI 283 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHH
Confidence 56666666554332222222222378999999999999999999888766666667777888889999999999999999
Q ss_pred HHHHHHHhhccccCCChhhhHHHHHHHHHHhhcccccHHHHHHHHHHhccCcCccc
Q psy4083 179 ASLTSARTTANSIYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEGFSTVD 234 (374)
Q Consensus 179 ~~~~~a~~~~~~~~~~~~~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~f~~~~ 234 (374)
.++.++...... ..++..........|.++. ..|+|..|..+|-++.+-+...|
T Consensus 284 ~~~~~a~~~~~~-~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~~~ 337 (338)
T 3ro2_A 284 DYHLKHLAIAQE-LKDRIGEGRACWSLGNAYT-ALGNHDQAMHFAEKHLEISREVG 337 (338)
T ss_dssp HHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHhhc
Confidence 999998776533 2455666677777888889 99999999999999987766544
No 12
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.50 E-value=4e-05 Score=72.62 Aligned_cols=111 Identities=15% Similarity=0.106 Sum_probs=88.9
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHH
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALD 202 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~ 202 (374)
.+|.+|...|++++|+..+.+.+.-.....+.......+.....++...|++..+..++.++...... ..++.......
T Consensus 192 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 270 (406)
T 3sf4_A 192 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ-LKDRAVEAQSC 270 (406)
T ss_dssp HHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh-CcCchHHHHHH
Confidence 68889999999999999988888766666666677778888889999999999999999988776532 35566666777
Q ss_pred HHHHHHhhcccccHHHHHHHHHHhccCcCcccc
Q psy4083 203 LQSGILHAADEQDFKTAFSYFYEAFEGFSTVDH 235 (374)
Q Consensus 203 ~~~G~~~~~~~rdy~~A~~~F~eaf~~f~~~~~ 235 (374)
...|.++. ..++|..|..+|-++.+.+...++
T Consensus 271 ~~la~~~~-~~g~~~~A~~~~~~a~~~~~~~~~ 302 (406)
T 3sf4_A 271 YSLGNTYT-LLQDYEKAIDYHLKHLAIAQELND 302 (406)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHH-HhCcHHHHHHHHHHHHHHHHhcCC
Confidence 77888888 899999999999888765554444
No 13
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.48 E-value=6.5e-06 Score=76.54 Aligned_cols=192 Identities=12% Similarity=0.053 Sum_probs=133.5
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHH-HHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHHHH
Q psy4083 42 LQLGEKYKQEGKAIELAELIKKTRPFLSQISKAK-AAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQSL 120 (374)
Q Consensus 42 ~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~-~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~~l 120 (374)
.+.+..++..|+|+++.+.+.......+..+... .......+-..... .+..+.-+..+.++++.....+..+....+
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLK-KVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTT-SSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 3447889999999999999888776544333221 11222223333321 122344455666666533212222222222
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhH
Q psy4083 121 EARLIALYFDTGEYTEALKLSSSLLKELKKL-DDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQA 199 (374)
Q Consensus 121 ~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~-dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~ 199 (374)
-..+|.+|...|+|++|+..+.+.++.++.. .+......++.....+|...+++.+|..++.+|..+... ..+....+
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~-~~~~~~~~ 236 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR-INSMALIG 236 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTBCTTHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-cCcHHHHH
Confidence 2368999999999999999999999877766 566777889999999999999999999999999877533 24555668
Q ss_pred HHHHHHHHHhhcccc-cHHHHHHHHHHhccCcCcccch
Q psy4083 200 ALDLQSGILHAADEQ-DFKTAFSYFYEAFEGFSTVDHN 236 (374)
Q Consensus 200 ~i~~~~G~~~~~~~r-dy~~A~~~F~eaf~~f~~~~~~ 236 (374)
.+...-|.++. ..+ +|.+|..+|-.|..-+...+++
T Consensus 237 ~~~~~lg~~~~-~~g~~~~~A~~~~~~Al~i~~~~~~~ 273 (293)
T 3u3w_A 237 QLYYQRGECLR-KLEYEEAEIEDAYKKASFFFDILEMH 273 (293)
T ss_dssp HHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHH-HhCCcHHHHHHHHHHHHHHHHHhCCH
Confidence 88888899998 888 5899999999997666555554
No 14
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.47 E-value=2.6e-05 Score=73.88 Aligned_cols=193 Identities=13% Similarity=0.092 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHhCC--------------------HHHHHHHHHHHHhhhhhhhhH-HHHHHHHHHHHHhhccccchhhhH
Q psy4083 40 NILQLGEKYKQEGK--------------------AIELAELIKKTRPFLSQISKA-KAAKLVRSLVDFFLDLETRTGMEV 98 (374)
Q Consensus 40 ~~~~l~~~~~~~~~--------------------~~~l~~~l~~l~~~~~~~~k~-~~~k~i~~ild~~~~~~~~~~~~~ 98 (374)
+...++.++...|+ ++...+.+..........+.. ........+-..... .+..+.-+
T Consensus 129 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~ 207 (406)
T 3sf4_A 129 ALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYL-LGNFRDAV 207 (406)
T ss_dssp HHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTBHHHHH
T ss_pred HHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH-ccCHHHHH
Confidence 67788999999999 888888877766665444221 122222222222211 12234446
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHH
Q psy4083 99 ALCKECIEWAKEERRTFLRQSLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSR 178 (374)
Q Consensus 99 ~l~~e~i~~~~~~~r~~lr~~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~ 178 (374)
..+.++++.....+........-..+|.+|...|++++|+..+.+.+.-.....+......++.....++...|++.++.
T Consensus 208 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 287 (406)
T 3sf4_A 208 IAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAI 287 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHH
Confidence 66666666654333222222223368999999999999999999888766666667777888889999999999999999
Q ss_pred HHHHHHHhhccccCCChhhhHHHHHHHHHHhhcccccHHHHHHHHHHhccCcCcccc
Q psy4083 179 ASLTSARTTANSIYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEGFSTVDH 235 (374)
Q Consensus 179 ~~~~~a~~~~~~~~~~~~~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~f~~~~~ 235 (374)
.++..+...... ..++.........-|.++. ..++|..|..+|-++.+-+...++
T Consensus 288 ~~~~~a~~~~~~-~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~ 342 (406)
T 3sf4_A 288 DYHLKHLAIAQE-LNDRIGEGRACWSLGNAYT-ALGNHDQAMHFAEKHLEISREVGD 342 (406)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcC
Confidence 999998877533 3556666777778888899 999999999999999877666655
No 15
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.46 E-value=1.8e-05 Score=75.89 Aligned_cols=195 Identities=13% Similarity=0.113 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHhCC-----------------HHHHHHHHHHHHhhhhhhhhH-HHHHHHHHHHHHhhccccchhhhHHHH
Q psy4083 40 NILQLGEKYKQEGK-----------------AIELAELIKKTRPFLSQISKA-KAAKLVRSLVDFFLDLETRTGMEVALC 101 (374)
Q Consensus 40 ~~~~l~~~~~~~~~-----------------~~~l~~~l~~l~~~~~~~~k~-~~~k~i~~ild~~~~~~~~~~~~~~l~ 101 (374)
+...++.++...|+ ++...+++..........+.. ........+-..... .+..+.-+..+
T Consensus 168 ~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~ 246 (411)
T 4a1s_A 168 ALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYL-LGDFQAAIEHH 246 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-cCChHHHHHHH
Confidence 56778889999999 888877777666555433221 111122222221111 12234445566
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHH
Q psy4083 102 KECIEWAKEERRTFLRQSLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASL 181 (374)
Q Consensus 102 ~e~i~~~~~~~r~~lr~~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~ 181 (374)
.++++.....+........-..+|.+|...|++++|+..+.+.+.......+.......+.....++...|++.++..++
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (411)
T 4a1s_A 247 QERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYH 326 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666554333222222222378999999999999999999888776666666677888889999999999999999999
Q ss_pred HHHHhhccccCCChhhhHHHHHHHHHHhhcccccHHHHHHHHHHhccCcCcccchh
Q psy4083 182 TSARTTANSIYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEGFSTVDHNH 237 (374)
Q Consensus 182 ~~a~~~~~~~~~~~~~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~f~~~~~~~ 237 (374)
.++....... .++..........|.++. ..++|.+|..+|-++.+-+...+++.
T Consensus 327 ~~al~~~~~~-~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~ 380 (411)
T 4a1s_A 327 NRHLAIAQEL-GDRIGEARACWSLGNAHS-AIGGHERALKYAEQHLQLAXXXXXXX 380 (411)
T ss_dssp HHHHHHHHHH-TCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHC-CChHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHhhcccch
Confidence 9987765332 455556667777888899 99999999999999988888776643
No 16
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.44 E-value=6.8e-05 Score=71.82 Aligned_cols=111 Identities=13% Similarity=0.108 Sum_probs=87.2
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHH
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALD 202 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~ 202 (374)
.+|.+|...|++++|++.+.+.+.-.....+.......+.....++...+++..+..++..+...... ..++.......
T Consensus 228 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 306 (411)
T 4a1s_A 228 NLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVE-LGEREVEAQSC 306 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 68888999999999998888888766666566666778888888999999999999999888776533 25555666777
Q ss_pred HHHHHHhhcccccHHHHHHHHHHhccCcCcccc
Q psy4083 203 LQSGILHAADEQDFKTAFSYFYEAFEGFSTVDH 235 (374)
Q Consensus 203 ~~~G~~~~~~~rdy~~A~~~F~eaf~~f~~~~~ 235 (374)
...|.++. ..++|.+|..+|-++.+.+...++
T Consensus 307 ~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 307 YSLGNTYT-LLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHHHHHCCC
Confidence 77888888 899999999999888665544443
No 17
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.35 E-value=0.00012 Score=70.30 Aligned_cols=204 Identities=11% Similarity=0.149 Sum_probs=143.2
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhH-HHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhh--HH-HH
Q psy4083 41 ILQLGEKYKQEGKAIELAELIKKTRPFLSQISKA-KAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEER--RT-FL 116 (374)
Q Consensus 41 ~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~-~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~--r~-~l 116 (374)
.+..+..++..|++++..+.+..-......++-. ..+.+...+=...... +..+.-+..+.++++.....+ .. ..
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHM-KQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 3456888899999999999998887776555322 2233333332222221 223444666666666654322 11 22
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChh
Q psy4083 117 RQSLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPK 196 (374)
Q Consensus 117 r~~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~ 196 (374)
... ..+|.+|...|++++|++.+.+.+.-.++..+......++.....+|...|++.+|..++.+|..+.... .+|.
T Consensus 183 ~~~--~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~-~~~~ 259 (378)
T 3q15_A 183 QSL--FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK-VPDL 259 (378)
T ss_dssp HHH--HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-CGGG
T ss_pred HHH--HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh-CChh
Confidence 332 2689999999999999999999988777776777778888888999999999999999999987764322 4555
Q ss_pred hhHHHHHHHHHHhhcccccHHHHHHHHHHhccCcCcccchhHHHHHHHHHHHHHhc
Q psy4083 197 MQAALDLQSGILHAADEQDFKTAFSYFYEAFEGFSTVDHNHAMMSLKYMLLSKIML 252 (374)
Q Consensus 197 ~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~f~~~~~~~~~~~LkY~vL~~iL~ 252 (374)
. ......-|.++. ..++|..|..+|-.+.+.....+++..... +..+..+..
T Consensus 260 ~-~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~l~~ly~ 311 (378)
T 3q15_A 260 L-PKVLFGLSWTLC-KAGQTQKAFQFIEEGLDHITARSHKFYKEL--FLFLQAVYK 311 (378)
T ss_dssp H-HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCTTCCSCHHHH--HHHHHHHHS
T ss_pred H-HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHHh
Confidence 5 666777788889 999999999999999887777666655543 344444443
No 18
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.34 E-value=0.0001 Score=70.61 Aligned_cols=203 Identities=11% Similarity=0.097 Sum_probs=140.2
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHH-HHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhH-HHHHHHHH
Q psy4083 44 LGEKYKQEGKAIELAELIKKTRPFLSQISKAK-AAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERR-TFLRQSLE 121 (374)
Q Consensus 44 l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~-~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r-~~lr~~l~ 121 (374)
.+..++..|+|++..+.+.........++-.. .+.+...+=...... +..+.-+..+.++++.....+. ..-....-
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYM-KQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 78999999999999999988887765543222 223333332222211 2244446666666665543221 11112222
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCC-hhhhHH
Q psy4083 122 ARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCP-PKMQAA 200 (374)
Q Consensus 122 ~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~-~~~~~~ 200 (374)
..+|.+|...|++++|++.+.+.+.-.++..+......++.....+|...|++.+|..++.+|..+.... .+ |.. ..
T Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-~~~~~~-~~ 265 (383)
T 3ulq_A 188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES-NILPSL-PQ 265 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCGGGH-HH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh-ccchhH-HH
Confidence 3689999999999999999999988777777777778888899999999999999999999998765332 34 444 56
Q ss_pred HHHHHHHHhhcccccHHHHHHHHHHhccCcCcccchhHHHHHHHHHHHHHhc
Q psy4083 201 LDLQSGILHAADEQDFKTAFSYFYEAFEGFSTVDHNHAMMSLKYMLLSKIML 252 (374)
Q Consensus 201 i~~~~G~~~~~~~rdy~~A~~~F~eaf~~f~~~~~~~~~~~LkY~vL~~iL~ 252 (374)
....-|.++. ..++|..|..+|-.+.+-....+++..... +..+..+..
T Consensus 266 ~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~l~~~~~ 314 (383)
T 3ulq_A 266 AYFLITQIHY-KLGKIDKAHEYHSKGMAYSQKAGDVIYLSE--FEFLKSLYL 314 (383)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHH--HHHHHHHHT
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHHh
Confidence 6677788888 899999999999999776655555554433 444554444
No 19
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.30 E-value=4.2e-05 Score=70.96 Aligned_cols=196 Identities=12% Similarity=0.043 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHH-HHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHH
Q psy4083 40 NILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAK-AAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQ 118 (374)
Q Consensus 40 ~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~-~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~ 118 (374)
.+...+..++..|+|+++.+.+.......+..+... .......+-..... .+..+.-+..+.++++........|...
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLK-KVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 445678889999999999888776555433321111 11111112222211 1223333444444444322122223222
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhh
Q psy4083 119 SLEARLIALYFDTGEYTEALKLSSSLLKELKKLDD-KNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKM 197 (374)
Q Consensus 119 ~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd-~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~ 197 (374)
..-..+|.+|...|+|++|+..+.+.+.-.+...+ ....+.++.....+|...+++.+|..++.+|..+... ..++..
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~-~~~~~~ 234 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR-INSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTBCSS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCcHHH
Confidence 22236899999999999999999998866555433 3334478889999999999999999999999877532 245556
Q ss_pred hHHHHHHHHHHhhcccccHHHH-HHHHHHhccCcCcccchhH
Q psy4083 198 QAALDLQSGILHAADEQDFKTA-FSYFYEAFEGFSTVDHNHA 238 (374)
Q Consensus 198 ~~~i~~~~G~~~~~~~rdy~~A-~~~F~eaf~~f~~~~~~~~ 238 (374)
.+......|.++. ..++|..| ..+|-.|..-+...+++..
T Consensus 235 ~~~~~~~lg~~y~-~~g~~~~Ai~~~~~~Al~~~~~~~~~~~ 275 (293)
T 2qfc_A 235 IGQLYYQRGECLR-KLEYEEAEIEDAYKKASFFFDILEMHAY 275 (293)
T ss_dssp HHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHHHHHhCcHhh
Confidence 6788888899999 99999999 6667777655555555433
No 20
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.29 E-value=0.00024 Score=64.55 Aligned_cols=186 Identities=16% Similarity=0.119 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhh---hHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHh----
Q psy4083 39 QNILQLGEKYKQEGKAIELAELIKKTRPFLSQIS---KAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEE---- 111 (374)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~---k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~---- 111 (374)
+++..++..++..|++++..+.+........... ..........+-..... .+..+.-+..+.++++.....
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRD-QNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 4567779999999999999998888877654432 22223333333332221 122444466666666654311
Q ss_pred hHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcc
Q psy4083 112 RRTFLRQSLEARLIALYFDTGEYTEALKLSSSLLKELKKL--DDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTAN 189 (374)
Q Consensus 112 ~r~~lr~~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~--dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~ 189 (374)
......... .+|.+|...|++++|++.+.+.+...... .+......++.....++...+++..+..++.++.....
T Consensus 107 ~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 107 HPAVAATLN--NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp CHHHHHHHH--HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHH--HHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 122233333 68999999999999999999888766554 44556778888889999999999999999999877632
Q ss_pred ccC-CChhhhHHHHHHHHHHhhcccccHHHHHHHHHHhcc
Q psy4083 190 SIY-CPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFE 228 (374)
Q Consensus 190 ~~~-~~~~~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~ 228 (374)
... .++..........|.++. ..++|..|...|-++.+
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYL-KQGKFKQAETLYKEILT 223 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHH
Confidence 221 112334456667788888 89999999999988865
No 21
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.29 E-value=0.0002 Score=68.58 Aligned_cols=183 Identities=9% Similarity=0.090 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhh--HHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHH
Q psy4083 39 QNILQLGEKYKQEGKAIELAELIKKTRPFLSQISK--AKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFL 116 (374)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k--~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~l 116 (374)
.+.+.++..++..|+++...+++..-....+..+. ...+.....+=..+... +..+.-++.+.++++.+...+....
T Consensus 144 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~ 222 (383)
T 3ulq_A 144 EFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDL-KQYEDAISHFQKAYSMAEAEKQPQL 222 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHcCChHH
Confidence 56778899999999999999999888877765532 22222222222222211 2245556667677776653332222
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChh
Q psy4083 117 RQSLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPK 196 (374)
Q Consensus 117 r~~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~ 196 (374)
....-..+|.+|...|++++|++.+.+.+.-.+...+.......+.....++...|++.+|..++.+|..+... ..+|.
T Consensus 223 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~ 301 (383)
T 3ulq_A 223 MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQK-AGDVI 301 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTCHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-cCCHH
Confidence 22222368999999999999999999988766665564555888899999999999999999999998877533 25666
Q ss_pred hhHHHHHHHHHHhhccccc---HHHHHHHHHH
Q psy4083 197 MQAALDLQSGILHAADEQD---FKTAFSYFYE 225 (374)
Q Consensus 197 ~~~~i~~~~G~~~~~~~rd---y~~A~~~F~e 225 (374)
....+.. -|.++. ..++ +..|...|-+
T Consensus 302 ~~~~~~~-l~~~~~-~~~~~~~~~~al~~~~~ 331 (383)
T 3ulq_A 302 YLSEFEF-LKSLYL-SGPDEEAIQGFFDFLES 331 (383)
T ss_dssp HHHHHHH-HHHHHT-SSCCHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHh-CCCcHHHHHHHHHHHHH
Confidence 6666444 455566 6677 5555554443
No 22
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.26 E-value=0.00067 Score=63.43 Aligned_cols=187 Identities=12% Similarity=0.042 Sum_probs=130.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhh-HHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHH
Q psy4083 31 DEEVKAKEQNILQLGEKYKQEGKAIELAELIKKTRPFLSQISK-AKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAK 109 (374)
Q Consensus 31 ~~~~k~~e~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k-~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~ 109 (374)
+.....++++ +.++...|+|++..+.+..........+. ...+....++-..+... +..+.-+..+..+++-..
T Consensus 33 ~~A~~~~~~a----~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~-g~~~~A~~~~~~Al~l~~ 107 (307)
T 2ifu_A 33 DSAASEYAKA----AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDL-QRMPEAVQYIEKASVMYV 107 (307)
T ss_dssp HHHHHHHHHH----HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHH
Confidence 4445566665 89999999999999988887777655432 23344555544444322 224444666666666544
Q ss_pred HhhHHH--HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy4083 110 EERRTF--LRQSLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTT 187 (374)
Q Consensus 110 ~~~r~~--lr~~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~ 187 (374)
..+... .... ..+|.+|.. |++++|+..+.+.+.-.....+.....+++.....++...+++..|..++.++..+
T Consensus 108 ~~g~~~~~a~~~--~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 184 (307)
T 2ifu_A 108 ENGTPDTAAMAL--DRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM 184 (307)
T ss_dssp TTTCHHHHHHHH--HHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHH--HHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 232221 2333 368999999 99999999999988766555556666788888899999999999999999998776
Q ss_pred ccccCCChhhhHHHHHHHHHHhhcccccHHHHHHHHHHhc
Q psy4083 188 ANSIYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAF 227 (374)
Q Consensus 188 ~~~~~~~~~~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf 227 (374)
.... .++..........|..++ ..++|..|..+|-.+.
T Consensus 185 ~~~~-~~~~~~~~~~~~~g~~~~-~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 185 YKEM-ENYPTCYKKCIAQVLVQL-HRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHT-TCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHT
T ss_pred HHHc-CChhHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHh
Confidence 4221 233344456667788888 8899999999999987
No 23
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.24 E-value=0.0002 Score=61.29 Aligned_cols=143 Identities=13% Similarity=0.001 Sum_probs=106.7
Q ss_pred hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHhC
Q psy4083 94 TGMEVALCKECIEWAKEERRTFLRQSLEARLIALYFDTGEYTEALKLSSSLLKELKKLD-DKNLLVEVLLLESKTYHALS 172 (374)
Q Consensus 94 ~~~~~~l~~e~i~~~~~~~r~~lr~~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~d-d~~~~lev~l~ei~l~~~~~ 172 (374)
.+.-+..+.+.++.+...+........-..+|.+|...|++++|+..+.+.+.-.+... +.......+.....++...|
T Consensus 42 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g 121 (203)
T 3gw4_A 42 FDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFG 121 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhC
Confidence 34445556666665543322222222223689999999999999999998887776655 34467778888899999999
Q ss_pred CHHHHHHHHHHHHhhccccCCChhhhHHHHHHHHHHhhcccccHHHHHHHHHHhccCcCcccchhH
Q psy4083 173 NLSTSRASLTSARTTANSIYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEGFSTVDHNHA 238 (374)
Q Consensus 173 n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~f~~~~~~~~ 238 (374)
++..+..++.++...... ..++...+......|.++. ..++|.+|..+|-++.+-+...+++..
T Consensus 122 ~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~ 185 (203)
T 3gw4_A 122 DLAGARQEYEKSLVYAQQ-ADDQVAIACAFRGLGDLAQ-QEKNLLEAQQHWLRARDIFAELEDSEA 185 (203)
T ss_dssp CHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHH-HCcCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 999999999998776532 3567777777788899999 999999999999999887777776543
No 24
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.24 E-value=0.0032 Score=58.27 Aligned_cols=191 Identities=8% Similarity=-0.028 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhh-HHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHh
Q psy4083 33 EVKAKEQNILQLGEKYKQEGKAIELAELIKKTRPFLSQISK-AKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEE 111 (374)
Q Consensus 33 ~~k~~e~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k-~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~ 111 (374)
....++++ +.++...|+|++..+.+..........+- ...+....++-..+... +..+.-+..+..+++-....
T Consensus 36 A~~~~~~a----~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~-g~~~~A~~~~~~Al~l~~~~ 110 (292)
T 1qqe_A 36 AADLCVQA----ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSG-GNSVNAVDSLENAIQIFTHR 110 (292)
T ss_dssp HHHHHHHH----HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH----HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHc
Confidence 34455555 88999999999999988877776654422 12334444443333322 22344456666666654433
Q ss_pred hHHHHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccc
Q psy4083 112 RRTFLRQSLEARLIALYFDT-GEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANS 190 (374)
Q Consensus 112 ~r~~lr~~l~~kLa~~~~~~-g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~ 190 (374)
++..--...-..+|.+|... |++++|+..+.+.+.-.....+.....+++.....++...|++..|..++.++......
T Consensus 111 g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 190 (292)
T 1qqe_A 111 GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG 190 (292)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 32222122223689999996 99999999999888655544444455677888899999999999999999998776421
Q ss_pred cCCChh-hhHHHHHHHHHHhhcccccHHHHHHHHHHhccCc
Q psy4083 191 IYCPPK-MQAALDLQSGILHAADEQDFKTAFSYFYEAFEGF 230 (374)
Q Consensus 191 ~~~~~~-~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~f 230 (374)
. .... .........|.++. ..++|..|..+|-.+.+-.
T Consensus 191 ~-~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l~ 229 (292)
T 1qqe_A 191 N-RLSQWSLKDYFLKKGLCQL-AATDAVAAARTLQEGQSED 229 (292)
T ss_dssp C-TTTGGGHHHHHHHHHHHHH-HTTCHHHHHHHHHGGGCC-
T ss_pred C-CcccHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhC
Confidence 1 1111 12234556788888 8999999999998886533
No 25
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.22 E-value=0.0007 Score=60.21 Aligned_cols=187 Identities=14% Similarity=0.079 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhh--h-hHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHh----
Q psy4083 39 QNILQLGEKYKQEGKAIELAELIKKTRPFLSQI--S-KAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEE---- 111 (374)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~--~-k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~---- 111 (374)
.+...++..++..|++++..+.+.......... + ..........+-..+... +..+.-++.+.++++.....
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKR-GKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHcCCC
Confidence 456778999999999999998888877665332 0 112233333333333221 22444566666666654311
Q ss_pred hHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcc
Q psy4083 112 RRTFLRQSLEARLIALYFDTGEYTEALKLSSSLLKELKKL--DDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTAN 189 (374)
Q Consensus 112 ~r~~lr~~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~--dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~ 189 (374)
......... .+|.+|...|++++|+..+.+.+.-.... .+......++.....++...|++..|..++..+.....
T Consensus 123 ~~~~~~~~~--~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 200 (283)
T 3edt_B 123 HPDVAKQLN--NLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAH 200 (283)
T ss_dssp CHHHHHHHH--HHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 123334443 68999999999999999999988766554 23456678888889999999999999999998876521
Q ss_pred cc------------------------------------------CCChhhhHHHHHHHHHHhhcccccHHHHHHHHHHhc
Q psy4083 190 SI------------------------------------------YCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAF 227 (374)
Q Consensus 190 ~~------------------------------------------~~~~~~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf 227 (374)
.. ..++.-........|.++. ..|+|..|...|-.+.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 201 EKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYR-RQGKLEAAHTLEDCAS 279 (283)
T ss_dssp HHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred HhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHH
Confidence 10 0011222345566777788 8899999999888776
Q ss_pred cC
Q psy4083 228 EG 229 (374)
Q Consensus 228 ~~ 229 (374)
+.
T Consensus 280 ~~ 281 (283)
T 3edt_B 280 RN 281 (283)
T ss_dssp TT
T ss_pred Hh
Confidence 54
No 26
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.21 E-value=7.7e-05 Score=60.46 Aligned_cols=108 Identities=14% Similarity=0.060 Sum_probs=90.0
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHH
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALD 202 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~ 202 (374)
.+|.++...|++++|++.+.+.+...+...+......++.....++...+++..+..++.++...... ..++...+...
T Consensus 54 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~ 132 (164)
T 3ro3_A 54 NLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE-LKDRIGEGRAC 132 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-ccchHhHHHHH
Confidence 57889999999999999999988777777677777888888999999999999999999998776533 25566667777
Q ss_pred HHHHHHhhcccccHHHHHHHHHHhccCcCc
Q psy4083 203 LQSGILHAADEQDFKTAFSYFYEAFEGFST 232 (374)
Q Consensus 203 ~~~G~~~~~~~rdy~~A~~~F~eaf~~f~~ 232 (374)
...|.++. ..++|..|..+|-++.+.+..
T Consensus 133 ~~la~~~~-~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 133 WSLGNAYT-ALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHH-HHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHH-HccCHHHHHHHHHHHHHHHHH
Confidence 88888999 999999999999888665543
No 27
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.16 E-value=0.00051 Score=55.43 Aligned_cols=149 Identities=12% Similarity=0.027 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHH-HHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHH
Q psy4083 39 QNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKA-AKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLR 117 (374)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~-~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr 117 (374)
.+...++..++..|++++..+.+.......+..+-... ..+...+-..... .+..+.-+..+.++++.....+.....
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIF-LGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 56778899999999999998888887776654432211 1222222222211 122444566666777665533322333
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q psy4083 118 QSLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTA 188 (374)
Q Consensus 118 ~~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~ 188 (374)
...-..+|.++...|++++|++.+.+.+.......+.......+.....++...+++..+..++.++..+.
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 33334689999999999999999998887766666677778888889999999999999999999987764
No 28
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.13 E-value=0.00079 Score=64.43 Aligned_cols=182 Identities=10% Similarity=0.038 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhh--HHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHH
Q psy4083 39 QNILQLGEKYKQEGKAIELAELIKKTRPFLSQISK--AKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFL 116 (374)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k--~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~l 116 (374)
.+.+.++.+++..|+++...+++..-....+..+. ...+.....+=...... +..+.-++.+.++++.+...+....
T Consensus 142 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~-~~~~~A~~~~~~al~~~~~~~~~~~ 220 (378)
T 3q15_A 142 EFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDF-KHYDKALPHLEAALELAMDIQNDRF 220 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 56778899999999999999988888777755432 12233333322222211 2244556667777776653332233
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChh
Q psy4083 117 RQSLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPK 196 (374)
Q Consensus 117 r~~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~ 196 (374)
....-..||.+|...|++++|++.+.+.+.-.....++.. ...+.....++...|++.+|..++.+|..+... ..+|.
T Consensus 221 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~ 298 (378)
T 3q15_A 221 IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA-RSHKF 298 (378)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT-TCCSC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-cCCHH
Confidence 2222236899999999999999999999876666555555 888899999999999999999999999888643 35666
Q ss_pred hhHHHHHHHHHHhhccccc---HHHHHHHHHH
Q psy4083 197 MQAALDLQSGILHAADEQD---FKTAFSYFYE 225 (374)
Q Consensus 197 ~~~~i~~~~G~~~~~~~rd---y~~A~~~F~e 225 (374)
....+..++++ +. ..++ +..|..+|-+
T Consensus 299 ~~~~~~~l~~l-y~-~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 299 YKELFLFLQAV-YK-ETVDERKIHDLLSYFEK 328 (378)
T ss_dssp HHHHHHHHHHH-HS-SSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-Hh-CCCcHHHHHHHHHHHHh
Confidence 66666555444 45 5666 6666655543
No 29
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.09 E-value=0.0011 Score=60.01 Aligned_cols=186 Identities=15% Similarity=0.123 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhh--h-hHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHh----
Q psy4083 39 QNILQLGEKYKQEGKAIELAELIKKTRPFLSQI--S-KAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEE---- 111 (374)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~--~-k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~---- 111 (374)
.+...++..+...|++++..+.+.......... + ..........+-...... +..+.-+..+.++++.....
T Consensus 70 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~ 148 (311)
T 3nf1_A 70 TMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKR-GKYKEAEPLCKRALEIREKVLGKD 148 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHHHhcCCC
Confidence 456678999999999999988888777665332 0 112223333333333221 22344455666666554211
Q ss_pred hHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcc
Q psy4083 112 RRTFLRQSLEARLIALYFDTGEYTEALKLSSSLLKELKKL--DDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTAN 189 (374)
Q Consensus 112 ~r~~lr~~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~--dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~ 189 (374)
......... .+|.++...|++++|++.+.+.+...... .+......++.....++...|++.++..++.++.....
T Consensus 149 ~~~~~~~~~--~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 226 (311)
T 3nf1_A 149 HPDVAKQLN--NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAH 226 (311)
T ss_dssp CHHHHHHHH--HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 122333333 68999999999999999999988766654 33556678888889999999999999999998875421
Q ss_pred c------------------------------------------cCCChhhhHHHHHHHHHHhhcccccHHHHHHHHHHhc
Q psy4083 190 S------------------------------------------IYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAF 227 (374)
Q Consensus 190 ~------------------------------------------~~~~~~~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf 227 (374)
. ..............-|.++. ..++|.+|..+|-+++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 227 EREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYR-RQGKFEAAETLEEAAM 305 (311)
T ss_dssp HHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHH
T ss_pred HhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHH-HCCCHHHHHHHHHHHH
Confidence 1 00011223345566677788 8899999999887775
Q ss_pred c
Q psy4083 228 E 228 (374)
Q Consensus 228 ~ 228 (374)
+
T Consensus 306 ~ 306 (311)
T 3nf1_A 306 R 306 (311)
T ss_dssp H
T ss_pred H
Confidence 4
No 30
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.02 E-value=0.0012 Score=56.34 Aligned_cols=167 Identities=10% Similarity=-0.039 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHH-HHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhh-HHHH
Q psy4083 39 QNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAK-AAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEER-RTFL 116 (374)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~-~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~-r~~l 116 (374)
.+...++..+...|++++..+++..........+... .......+=.... ..+..+.-+..+.++++.+...+ ..+.
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVER-MAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 4567789999999999999999888877665443221 2222222222111 12334445666767777665333 3333
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChh
Q psy4083 117 RQSLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPK 196 (374)
Q Consensus 117 r~~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~ 196 (374)
....-..+|.++...|++++|+..+.+.+.-.+...+.......+.....++...|++..+..++.++..+... ..++.
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~ 184 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE-LEDSE 184 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH-cCCHH
Confidence 33333468999999999999999999888766666666667777888899999999999999999998877633 35565
Q ss_pred hhHHHHHHHHH
Q psy4083 197 MQAALDLQSGI 207 (374)
Q Consensus 197 ~~~~i~~~~G~ 207 (374)
-.+......|.
T Consensus 185 ~~~~~~~~~~~ 195 (203)
T 3gw4_A 185 AVNELMTRLNG 195 (203)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHhcccc
Confidence 55555444443
No 31
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.87 E-value=0.0088 Score=56.43 Aligned_cols=190 Identities=12% Similarity=-0.008 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHH
Q psy4083 39 QNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQ 118 (374)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~ 118 (374)
.+....+.++...|++++..+.+.......+.-+......+...+-.... ..+..+.-...+.+.++.+...+..+...
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH-CKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 45667788999999999998888776655432211111111111111111 11223444566666676665444444444
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChh
Q psy4083 119 SLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDK--NLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPK 196 (374)
Q Consensus 119 ~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~--~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~ 196 (374)
.....++.++...|++++|+..+.+.+.......+. ......+.....++...|++..+..++.++....... .++.
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~ 172 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY-QPQQ 172 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS-CGGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc-CcHH
Confidence 434468999999999999999998888665554332 3445566667788999999999999999988765332 3333
Q ss_pred hhHHHHHHHHHHhhcccccHHHHHHHHHHhccCcCc
Q psy4083 197 MQAALDLQSGILHAADEQDFKTAFSYFYEAFEGFST 232 (374)
Q Consensus 197 ~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~f~~ 232 (374)
........|.++. ..++|..|...|-++......
T Consensus 173 -~~~~~~~la~~~~-~~g~~~~A~~~l~~a~~~~~~ 206 (373)
T 1hz4_A 173 -QLQCLAMLIQCSL-ARGDLDNARSQLNRLENLLGN 206 (373)
T ss_dssp -GHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhc
Confidence 4455666788888 999999999999888654333
No 32
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.84 E-value=0.0021 Score=61.85 Aligned_cols=201 Identities=6% Similarity=-0.024 Sum_probs=132.3
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhhhhhh------------hHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhh
Q psy4083 45 GEKYKQEGKAIELAELIKKTRPFLSQIS------------KAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEER 112 (374)
Q Consensus 45 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~------------k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~ 112 (374)
++-+++.|+|++..+.+.......+..+ ...-++++.++...+....+ .+.-++.+...+.....-+
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~-~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGA-KDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHcc
Confidence 6777899999999888887766543221 12344566666665543322 3444455544444433222
Q ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccC
Q psy4083 113 RTFLRQSLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIY 192 (374)
Q Consensus 113 r~~lr~~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~ 192 (374)
+...-..+..-++.++...|++++|++.+...+.......+......++..-.+++...|++..|..++..+...... .
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~-~ 168 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKK-L 168 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT-S
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHh-c
Confidence 222222222246777778899999999988888766665555566777888899999999999999999988766433 2
Q ss_pred CChhhhHHHHHHHHHHhhcccccHHHHHHHHHHhccCcCcccchhHHHHHHHHHHH
Q psy4083 193 CPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEGFSTVDHNHAMMSLKYMLLS 248 (374)
Q Consensus 193 ~~~~~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~f~~~~~~~~~~~LkY~vL~ 248 (374)
.+......+....|.++. ..+||.+|...+-.+.........+.......|..+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g 223 (434)
T 4b4t_Q 169 DDKPSLVDVHLLESKVYH-KLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSG 223 (434)
T ss_dssp SCSTHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHH
Confidence 455556677888899999 9999999999988775544444444444333343333
No 33
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=97.76 E-value=0.008 Score=52.58 Aligned_cols=174 Identities=16% Similarity=0.066 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHH---
Q psy4083 39 QNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTF--- 115 (374)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~--- 115 (374)
+.++.++..++..|+|++..+.+....... .-+... -.+-.+.-.. +..+.-++.+...++........+
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~--~~~~~~~~~~----~~~~~A~~~~~~a~~~~~~~~~~~~~~ 78 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYL--NNRAAAEYEK----GEYETAISTLNDAVEQGREMRADYKVI 78 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHH--HHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHH--HHHHHHHHHc----ccHHHHHHHHHHHHHhCcccccchHHH
Confidence 567788999999999999999888877665 222211 1111111111 223444556656665443221111
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH-------------------HHHh-ccchhHHHHHHHHHHHHHHhCCHH
Q psy4083 116 LRQSLEARLIALYFDTGEYTEALKLSSSLLKE-------------------LKKL-DDKNLLVEVLLLESKTYHALSNLS 175 (374)
Q Consensus 116 lr~~l~~kLa~~~~~~g~~~~Al~~~~~ll~e-------------------l~~~-dd~~~~lev~l~ei~l~~~~~n~~ 175 (374)
..... .+|.+|...|++++|++.+.+.++. +.+. .......+++.....++...+++.
T Consensus 79 ~~~~~--~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 79 SKSFA--RIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHH--HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHH--HHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHH
Confidence 23333 6899999999999999998888762 0110 123345677888889999999999
Q ss_pred HHHHHHHHHHhhccccCCChhhhHHHHHHHHHHhhcccccHHHHHHHHHHhccC
Q psy4083 176 TSRASLTSARTTANSIYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEG 229 (374)
Q Consensus 176 ~a~~~~~~a~~~~~~~~~~~~~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~ 229 (374)
.+...+.++..... .+ .......|.++. ..++|..|...|-.+.+.
T Consensus 157 ~A~~~~~~a~~~~~---~~----~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 157 NAVKAYTEMIKRAP---ED----ARGYSNRAAALA-KLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHHHHHCT---TC----HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCc---cc----HHHHHHHHHHHH-HhCCHHHHHHHHHHHHHh
Confidence 99999999876531 12 245566788888 899999999999888664
No 34
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.74 E-value=0.0044 Score=57.28 Aligned_cols=148 Identities=12% Similarity=0.141 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHH-HHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhh-HHHH
Q psy4083 39 QNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAK-AAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEER-RTFL 116 (374)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~-~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~-r~~l 116 (374)
.++..++.++...|++++..+++..-....+..+... .+....++=..+...-+..+.-+..+.++++.....+ ..+.
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 4566789999999999999998888877765554322 2333333333332210334555777778887765333 2222
Q ss_pred -HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q psy4083 117 -RQSLEARLIALYFDTGEYTEALKLSSSLLKELKKLDD-KNLLVEVLLLESKTYHALSNLSTSRASLTSARTTA 188 (374)
Q Consensus 117 -r~~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd-~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~ 188 (374)
... ..+|.+|...|+|++|+..+.+++........ ....-+.++.-..++...|++..|..++.++..+.
T Consensus 158 ~~~~--~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 229 (292)
T 1qqe_A 158 NKCF--IKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED 229 (292)
T ss_dssp HHHH--HHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred HHHH--HHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 222 37899999999999999888877642111111 11334566777788889999999999999987653
No 35
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.72 E-value=0.00032 Score=57.00 Aligned_cols=101 Identities=13% Similarity=0.147 Sum_probs=81.3
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHH
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALD 202 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~ 202 (374)
.||..++..|+|++|++.+.+.+. .+.. -.+.+.....+|..++++..+...+.+|..+......++...+...
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~----~~p~--~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIE----LDPS--NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH----HCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH----hCCC--CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 589999999999999999988874 1222 2457778889999999999999999998876534334556677788
Q ss_pred HHHHHHhhcccccHHHHHHHHHHhccCc
Q psy4083 203 LQSGILHAADEQDFKTAFSYFYEAFEGF 230 (374)
Q Consensus 203 ~~~G~~~~~~~rdy~~A~~~F~eaf~~f 230 (374)
.-.|..+. ..++|..|..+|-.+.+..
T Consensus 87 ~~lg~~~~-~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 87 SRAGNAFQ-KQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHhhC
Confidence 88899999 9999999999998886543
No 36
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.69 E-value=0.0064 Score=54.60 Aligned_cols=182 Identities=8% Similarity=0.025 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHH-HHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHH
Q psy4083 39 QNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAK-LVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLR 117 (374)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k-~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr 117 (374)
+.++..+..+++.|+|++..+.+..+....+.-+...-+- .+-.+.-.. +..+.-+..+...++....+ .....
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~----~~~~~A~~~~~~~l~~~p~~-~~~~~ 90 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQN----KEYLLAASEYERFIQIYQID-PRVPQ 90 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTC-TTHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHh----CcHHHHHHHHHHHHHHCCCC-chhHH
Confidence 4567889999999999999888888877665542211111 111111111 22333455554444432111 12222
Q ss_pred HHHHHHHHHHHHh--------ccCHHHHHHHHHHHHHHHHHhccc-----------hhHHHHHHHHHHHHHHhCCHHHHH
Q psy4083 118 QSLEARLIALYFD--------TGEYTEALKLSSSLLKELKKLDDK-----------NLLVEVLLLESKTYHALSNLSTSR 178 (374)
Q Consensus 118 ~~l~~kLa~~~~~--------~g~~~~Al~~~~~ll~el~~~dd~-----------~~~lev~l~ei~l~~~~~n~~~a~ 178 (374)
... .+|..++. .|++++|+..+.+++......... ...-+..+....++...|++..|.
T Consensus 91 a~~--~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 168 (261)
T 3qky_A 91 AEY--ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA 168 (261)
T ss_dssp HHH--HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHH--HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 333 57888888 999999998888887532211100 011122266788899999999999
Q ss_pred HHHHHHHhhccccCCChhhhHHHHHHHHHHhhccc----------ccHHHHHHHHHHhccCcCc
Q psy4083 179 ASLTSARTTANSIYCPPKMQAALDLQSGILHAADE----------QDFKTAFSYFYEAFEGFST 232 (374)
Q Consensus 179 ~~~~~a~~~~~~~~~~~~~~~~i~~~~G~~~~~~~----------rdy~~A~~~F~eaf~~f~~ 232 (374)
..+..+.... ++...........|..+. .. ++|.+|...|-.+.+.|..
T Consensus 169 ~~~~~~l~~~----p~~~~~~~a~~~l~~~~~-~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 227 (261)
T 3qky_A 169 VTYEAVFDAY----PDTPWADDALVGAMRAYI-AYAEQSVRARQPERYRRAVELYERLLQIFPD 227 (261)
T ss_dssp HHHHHHHHHC----TTSTTHHHHHHHHHHHHH-HHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHC----CCCchHHHHHHHHHHHHH-HhcccchhhcccchHHHHHHHHHHHHHHCCC
Confidence 9999986542 222222223333344443 33 8999999999888776653
No 37
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=97.67 E-value=9.8e-05 Score=64.48 Aligned_cols=70 Identities=13% Similarity=0.062 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHhhccccceeHHHHHhHhCCC-hHHHHHHHH-HHhhcCccceeecCCCCeEEEecCCcc
Q psy4083 276 GTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLD-ELAVEKKLS-QMILDKKFHGILDQGEKVLIVFEGAEI 345 (374)
Q Consensus 276 ~~L~~~ire~~l~~~~~pYs~I~l~~lA~~l~ls-~~~vE~~L~-~lI~dgkl~akID~~~giv~~~~~~~~ 345 (374)
..+.+.||.-.++.+..--+.|+++.|++.++++ +++||.++. +.|..|-|.|+|||++++|++....+|
T Consensus 89 ~~~~~KlrlLtL~sLa~~~~~lsy~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkiDQ~~~~v~V~~~~~R 160 (169)
T 3chm_A 89 PDQILKLKQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVPFAAGR 160 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHCSEEEHHHHHHHHTCCSHHHHHHHHHHTHHHHTSEEEEEETTTTEEEEEEECCT
T ss_pred HHHHHHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhCCeEEEEcCcCCEEEEEeecCC
Confidence 4566777777777777778999999999999999 999999999 999999999999999999999866554
No 38
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=97.65 E-value=0.0057 Score=51.55 Aligned_cols=164 Identities=12% Similarity=0.069 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHH
Q psy4083 39 QNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQ 118 (374)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~ 118 (374)
.+.+.++..+.+.|+|++..+.+......-|.-+.+... +-.+.... +..+.-+..+...+...... ...
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~--la~~~~~~----~~~~~a~~~~~~~~~~~~~~----~~~ 75 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLK--LGKTYMDI----GLPNDAIESLKKFVVLDTTS----AEA 75 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH--HHHHHHHT----TCHHHHHHHHHHHHHHCCCC----HHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHC----CCHHHHHHHHHHHHhcCchh----HHH
Confidence 346788999999999999999888887776655332221 11111111 21233343443333222111 112
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhh
Q psy4083 119 SLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQ 198 (374)
Q Consensus 119 ~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~ 198 (374)
.. .++.++...++++.|.+.+.+.+. .+.. -.+.+.....++...|++.+|...+.++.... |..
T Consensus 76 ~~--~~~~~~~~~~~~~~a~~~~~~a~~----~~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~------p~~- 140 (184)
T 3vtx_A 76 YY--ILGSANFMIDEKQAAIDALQRAIA----LNTV--YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK------PGF- 140 (184)
T ss_dssp HH--HHHHHHHHTTCHHHHHHHHHHHHH----HCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTC-
T ss_pred HH--HHHHHHHHcCCHHHHHHHHHHHHH----hCcc--chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc------chh-
Confidence 22 467788999999999877766543 2221 23556667888999999999999999987663 211
Q ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHhcc
Q psy4083 199 AALDLQSGILHAADEQDFKTAFSYFYEAFE 228 (374)
Q Consensus 199 ~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~ 228 (374)
......-|.++. ..++|.+|...|-.+++
T Consensus 141 ~~~~~~lg~~~~-~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 141 IRAYQSIGLAYE-GKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH-HCCCHHHHHHHHHHHHh
Confidence 234556688888 99999999999988865
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=97.64 E-value=0.0058 Score=53.52 Aligned_cols=94 Identities=12% Similarity=0.120 Sum_probs=72.6
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHH
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALD 202 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~ 202 (374)
.+|.++...|++++|++.+.+.+.. +.. -.+++.....++...+++..+...+..+.... |.. ....
T Consensus 144 ~~~~~~~~~~~~~~A~~~~~~a~~~----~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------~~~-~~~~ 210 (258)
T 3uq3_A 144 LEGKEYFTKSDWPNAVKAYTEMIKR----APE--DARGYSNRAAALAKLMSFPEAIADCNKAIEKD------PNF-VRAY 210 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTC-HHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhc----Ccc--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC------HHH-HHHH
Confidence 5899999999999999888777642 221 23677778889999999999999999987653 111 2445
Q ss_pred HHHHHHhhcccccHHHHHHHHHHhccCc
Q psy4083 203 LQSGILHAADEQDFKTAFSYFYEAFEGF 230 (374)
Q Consensus 203 ~~~G~~~~~~~rdy~~A~~~F~eaf~~f 230 (374)
...|.++. ..++|..|..+|-.+.+..
T Consensus 211 ~~l~~~~~-~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 211 IRKATAQI-AVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHhhHHHHHHHHHHHHHhC
Confidence 56688888 8999999999998886654
No 40
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.63 E-value=0.0051 Score=56.68 Aligned_cols=107 Identities=8% Similarity=-0.014 Sum_probs=82.7
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHH
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALD 202 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~ 202 (374)
.++.++...|++++|++.+.+.+.......+......++.....+|...+++.+|..++.+|..+......++.....+.
T Consensus 120 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~ 199 (293)
T 2qfc_A 120 YVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVR 199 (293)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHH
Confidence 47888999999999998887776433333344456778888899999999999999999999865433323444444667
Q ss_pred HHHHHHhhcccccHHHHHHHHHHhccCc
Q psy4083 203 LQSGILHAADEQDFKTAFSYFYEAFEGF 230 (374)
Q Consensus 203 ~~~G~~~~~~~rdy~~A~~~F~eaf~~f 230 (374)
...|.++. ..++|.+|..+|-.+.+..
T Consensus 200 ~nlg~~y~-~~~~y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 200 YNHAKALY-LDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHH-HHhhHHHHHHHHHHHHHHH
Confidence 77888889 9999999999999986544
No 41
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=97.62 E-value=0.0083 Score=54.67 Aligned_cols=185 Identities=12% Similarity=0.085 Sum_probs=112.1
Q ss_pred HhccCHHHHHHHHHHHHHHHHHhc------cc---hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhH
Q psy4083 129 FDTGEYTEALKLSSSLLKELKKLD------DK---NLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQA 199 (374)
Q Consensus 129 ~~~g~~~~Al~~~~~ll~el~~~d------d~---~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~ 199 (374)
++.+||+.|.+++.++-.+|-+.. .+ ..-.+++=.-.+++...+|.+.-.++..+-+..-....++...+.
T Consensus 18 ~~~~d~~~~~~lL~~lk~~L~~~~~~~p~~~~~~~~~ar~vyE~~a~~al~~~D~~~F~~~~~qLk~~Y~~~~~~s~~~~ 97 (229)
T 4b0z_A 18 YDRKDWNACKKELLKLKVELAKQNLFVPTSDKEKASFARNVFEYGVLVSIQTCDIESFARYASQVIPFYHDSLVPSSRMG 97 (229)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCSSCCSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSCCCCCTTHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCCCCccHH
Confidence 456899999666666554444421 11 233567777788889999988887777777665433223333455
Q ss_pred HHHHHHHHHhhcccccHHHHHHHHHHhccCcCcccchhHHHHHHHHH-H-HHHhcCCchhHHHHHHHHhcChHHHhhHHH
Q psy4083 200 ALDLQSGILHAADEQDFKTAFSYFYEAFEGFSTVDHNHAMMSLKYML-L-SKIMLNTPEDVNQILSELEDDTIVKAHIGT 277 (374)
Q Consensus 200 ~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~f~~~~~~~~~~~LkY~v-L-~~iL~~~~~~v~~ll~~l~~D~~l~~h~~~ 277 (374)
.+..+.-++.+ ..++..+ +.-+++....-+. .+....+++.+ | -.++.++-..+-.+... ...+......+.
T Consensus 98 e~~~~~LL~lL-~~~~~~e-f~~~le~l~~~~~---~~~~~~I~~al~l~~al~~GnY~kff~l~~~-~p~~~~~~~~~~ 171 (229)
T 4b0z_A 98 LVTGLNLLYLL-SENRIAE-FHTALESVPDKSL---FERDPYVEWVISLEQNVMEGAFDKVASMIRS-CNFPEFSYFMKI 171 (229)
T ss_dssp HHHHHHHHHHH-HTTCHHH-HHHHHHHCSCTTH---HHHCHHHHHHHHHHHHHHTTCHHHHHHHHHT-CCCGGGHHHHHH
T ss_pred HHHHHHHHHHH-HcCCchH-HHHHHHhcChHHH---hhcCHHHHHHHHHHHHHHcCCHHHHHHHHhc-CccchHHHHHHH
Confidence 56555556666 6676554 2335555332111 11112222221 2 23444443333332221 112233445677
Q ss_pred HHHHHHHHHHHHhhccccceeHHHHHhHhCCC-hHHHHHHHHH
Q psy4083 278 LYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLD-ELAVEKKLSQ 319 (374)
Q Consensus 278 L~~~ire~~l~~~~~pYs~I~l~~lA~~l~ls-~~~vE~~L~~ 319 (374)
+..++|..++.-+.+.|++|+++.+++.||++ +++++..+.+
T Consensus 172 l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~s~~e~~~f~~~ 214 (229)
T 4b0z_A 172 VMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEKLAEE 214 (229)
T ss_dssp HHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHHH
Confidence 89999999999999999999999999999994 6788887776
No 42
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.61 E-value=0.01 Score=56.06 Aligned_cols=189 Identities=13% Similarity=0.012 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHH--HH
Q psy4083 39 QNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRT--FL 116 (374)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~--~l 116 (374)
.++..++..+...|++++..+.+.......+..+-....-.....+-.+....+..+.-...+.+.++.....+.. ..
T Consensus 54 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 133 (373)
T 1hz4_A 54 VATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPM 133 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcH
Confidence 4567789999999999999988888777665543322211111111111111233444466666666665422110 11
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCCh-
Q psy4083 117 RQSLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPP- 195 (374)
Q Consensus 117 r~~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~- 195 (374)
....-..++.++...|++++|...+.+.+.......+.. ....+....+++...|++..+..++..+....... ..+
T Consensus 134 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~-~~~~ 211 (373)
T 1hz4_A 134 HEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG-KYHS 211 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG-GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS-CCCH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-Ccch
Confidence 111112589999999999999988887775444333332 45677788899999999999999999987764221 222
Q ss_pred hhhHHHHHHHHHHhhcccccHHHHHHHHHHhccCc
Q psy4083 196 KMQAALDLQSGILHAADEQDFKTAFSYFYEAFEGF 230 (374)
Q Consensus 196 ~~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~f 230 (374)
..........+.++. ..+++..|...+-++....
T Consensus 212 ~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~a~~~~ 245 (373)
T 1hz4_A 212 DWISNANKVRVIYWQ-MTGDKAAAANWLRHTAKPE 245 (373)
T ss_dssp HHHHHHHHHHHHHHH-HTTCHHHHHHHHHHSCCCC
T ss_pred hHHHHHHHHHHHHHH-HCCCHHHHHHHHHhCCCCC
Confidence 222222223445567 8899999999998886543
No 43
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=97.56 E-value=0.0066 Score=59.76 Aligned_cols=143 Identities=13% Similarity=0.126 Sum_probs=70.4
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHh----------CCHHHHHHHHHHHHhhccccC
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHAL----------SNLSTSRASLTSARTTANSIY 192 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~----------~n~~~a~~~~~~a~~~~~~~~ 192 (374)
.+|.++...|++++|++.+.+.+..-....+....+..++....++... +++..+..++.++.....
T Consensus 383 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p--- 459 (537)
T 3fp2_A 383 FFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP--- 459 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT---
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC---
Confidence 3577777778888887777766654333333333334445556666666 888888888877765521
Q ss_pred CChhhhHHHHHHHHHHhhcccccHHHHHHHHHHhccCcCcccchhHHHHHHHHHHHHHhcCCchhHHHHHHHHhcChHHH
Q psy4083 193 CPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEGFSTVDHNHAMMSLKYMLLSKIMLNTPEDVNQILSELEDDTIVK 272 (374)
Q Consensus 193 ~~~~~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~f~~~~~~~~~~~LkY~vL~~iL~~~~~~v~~ll~~l~~D~~l~ 272 (374)
.++ .....-|.++. ..|+|.+|...|-.+.+-.... +...+.+.+.--+.+ -..+..||.+.
T Consensus 460 ~~~----~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~~-----------~~~~~~~~~~~ 521 (537)
T 3fp2_A 460 RSE----QAKIGLAQLKL-QMEKIDEAIELFEDSAILARTM--DEKLQATTFAEAAKI-----------QKRLRADPIIS 521 (537)
T ss_dssp TCH----HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHC--C--HHHHHHHHHHHHHHH-----------HHHHHTC----
T ss_pred CCH----HHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCc--HHHHHHHhHHHHHHH-----------HHhccccHHHH
Confidence 112 34455667777 7888888888887776543322 222222222211111 11467788888
Q ss_pred hhHHHHHHHHHHHH
Q psy4083 273 AHIGTLYDNMLEQN 286 (374)
Q Consensus 273 ~h~~~L~~~ire~~ 286 (374)
..+..+.+.+|...
T Consensus 522 ~~~~~~~~~~r~~~ 535 (537)
T 3fp2_A 522 AKMELTLARYRAKG 535 (537)
T ss_dssp --------------
T ss_pred HHHhhHHHHHhhcc
Confidence 88888777777654
No 44
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.55 E-value=0.0076 Score=53.31 Aligned_cols=106 Identities=14% Similarity=0.023 Sum_probs=83.0
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccC-CChhhhH
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLD--DKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIY-CPPKMQA 199 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~d--d~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~-~~~~~~~ 199 (374)
.+|.+|...|++++|++.+.+.+....+.. +.......+.....++...+++.++..++.++........ +++....
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 169 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA 169 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 689999999999999999999987766652 2356788888999999999999999999999876632211 1222344
Q ss_pred HHHHHHHHHhhcccccHHHHHHHHHHhccC
Q psy4083 200 ALDLQSGILHAADEQDFKTAFSYFYEAFEG 229 (374)
Q Consensus 200 ~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~ 229 (374)
.....-|.++. ..++|..|...|-++.+.
T Consensus 170 ~~~~~la~~~~-~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 170 KTKNNLASCYL-KQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHH-HHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHH
Confidence 55667788888 899999999999888653
No 45
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.53 E-value=0.018 Score=53.53 Aligned_cols=144 Identities=12% Similarity=0.059 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhH-HHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHH
Q psy4083 40 NILQLGEKYKQEGKAIELAELIKKTRPFLSQISKA-KAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQ 118 (374)
Q Consensus 40 ~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~-~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~ 118 (374)
++..++.++...|+|++..+++..-.......+.. ..+....++=..+.. +..+.-+..+.++++.....+......
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~--g~~~~A~~~~~~Al~~~~~~~~~~~~~ 155 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP--LDLSKAVHLYQQAAAVFENEERLRQAA 155 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 45566888899999999988888777766544332 234444454444433 334555777778887765444332222
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy4083 119 SLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSAR 185 (374)
Q Consensus 119 ~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~ 185 (374)
..-..+|.+|...|+|++|+..+.+.+.-.....+.......++....++...+++..|..++.++.
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 2223789999999999999999998886555544444455677788888899999999999999987
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=97.51 E-value=0.014 Score=49.84 Aligned_cols=167 Identities=8% Similarity=-0.069 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHH
Q psy4083 39 QNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQ 118 (374)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~ 118 (374)
.+.+.++..++..|++++..+.+.......+..+.... .+-.+.-.. +..+.-++.+...++....+...|
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~l~~~~~~~----~~~~~A~~~~~~a~~~~~~~~~~~--- 79 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWL--VRAEIYQYL----KVNDKAQESFRQALSIKPDSAEIN--- 79 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH--HHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHH---
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHH--HHHHHHHHc----CChHHHHHHHHHHHHhCCCChHHH---
Confidence 45667799999999999998888887766554422111 111111111 223444555555554322121222
Q ss_pred HHHHHHHHHHHhc-cCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhh
Q psy4083 119 SLEARLIALYFDT-GEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKM 197 (374)
Q Consensus 119 ~l~~kLa~~~~~~-g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~ 197 (374)
. .++.++... |++++|++.+.+++. ........+.+.....++...+++.++..++.++..... .+
T Consensus 80 -~--~l~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~--- 146 (225)
T 2vq2_A 80 -N--NYGWFLCGRLNRPAESMAYFDKALA----DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP---QF--- 146 (225)
T ss_dssp -H--HHHHHHHTTTCCHHHHHHHHHHHHT----STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---TC---
T ss_pred -H--HHHHHHHHhcCcHHHHHHHHHHHHc----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CC---
Confidence 2 578899999 999999988887764 112233456777888899999999999999998876531 12
Q ss_pred hHHHHHHHHHHhhcccccHHHHHHHHHHhccC
Q psy4083 198 QAALDLQSGILHAADEQDFKTAFSYFYEAFEG 229 (374)
Q Consensus 198 ~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~ 229 (374)
.......|.++. ..++|..|...|-.+.+.
T Consensus 147 -~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~ 176 (225)
T 2vq2_A 147 -PPAFKELARTKM-LAGQLGDADYYFKKYQSR 176 (225)
T ss_dssp -HHHHHHHHHHHH-HHTCHHHHHHHHHHHHHH
T ss_pred -chHHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Confidence 234455677788 899999999999888664
No 47
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=97.46 E-value=0.0067 Score=55.25 Aligned_cols=100 Identities=18% Similarity=0.171 Sum_probs=75.4
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccc---hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhH
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDK---NLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQA 199 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~---~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~ 199 (374)
.+|.++...|++++|++.+.+.+.......+. ....+++.....++...|++..+..++.++..... .+ .
T Consensus 198 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~---~~----~ 270 (330)
T 3hym_B 198 EVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP---QN----A 270 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---TC----S
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc---cc----h
Confidence 57889999999999998888887654443222 23356777888899999999999999999876631 11 2
Q ss_pred HHHHHHHHHhhcccccHHHHHHHHHHhccCc
Q psy4083 200 ALDLQSGILHAADEQDFKTAFSYFYEAFEGF 230 (374)
Q Consensus 200 ~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~f 230 (374)
......|.++. ..++|.+|..+|-.+.+..
T Consensus 271 ~~~~~la~~~~-~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 271 STYSAIGYIHS-LMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHHHHHHHHH-HHTCHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHHHH-HhccHHHHHHHHHHHHccC
Confidence 34455678888 8999999999998886643
No 48
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=97.45 E-value=0.027 Score=51.59 Aligned_cols=99 Identities=11% Similarity=-0.047 Sum_probs=75.6
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHH
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALD 202 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~ 202 (374)
.+|..+...|++++|++.+.+++..- .++.....+.+.....++...|++..+...+..+..... .++ ...
T Consensus 239 ~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---~~~----~~~ 309 (359)
T 3ieg_A 239 ESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP---DNV----NAL 309 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCH----HHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc---ccH----HHH
Confidence 46889999999999988887776421 123445567777888999999999999999999876521 122 345
Q ss_pred HHHHHHhhcccccHHHHHHHHHHhccCcC
Q psy4083 203 LQSGILHAADEQDFKTAFSYFYEAFEGFS 231 (374)
Q Consensus 203 ~~~G~~~~~~~rdy~~A~~~F~eaf~~f~ 231 (374)
...|.++. ..++|.+|...|-.+.+...
T Consensus 310 ~~~~~~~~-~~g~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 310 KDRAEAYL-IEEMYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHhcCC
Confidence 56688888 89999999999999977543
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=97.39 E-value=0.026 Score=49.55 Aligned_cols=168 Identities=11% Similarity=0.069 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHH
Q psy4083 39 QNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQ 118 (374)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~ 118 (374)
.+.+.++..+...|++++..+.+.......+..+... -.+-.+.-.. +..+.-++.+.+.++....+...
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~la~~~~~~----~~~~~A~~~~~~a~~~~~~~~~~---- 107 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAH--AALAVVFQTE----MEPKLADEEYRKALASDSRNARV---- 107 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHH--HHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHH----
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHH--HHHHHHHHHc----CCHHHHHHHHHHHHHHCcCcHHH----
Confidence 5677889999999999999888887776654432211 1111111111 22344455555555432212122
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhh
Q psy4083 119 SLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQ 198 (374)
Q Consensus 119 ~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~ 198 (374)
.. .++.+|...|++++|++.+.+++. ........+++.....++...+++..+..++.++..... .+
T Consensus 108 ~~--~la~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~---- 174 (252)
T 2ho1_A 108 LN--NYGGFLYEQKRYEEAYQRLLEASQ----DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR---NQ---- 174 (252)
T ss_dssp HH--HHHHHHHHTTCHHHHHHHHHHHTT----CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS---CC----
T ss_pred HH--HHHHHHHHHhHHHHHHHHHHHHHh----CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc---cc----
Confidence 22 578899999999999888777663 112334556777788899999999999999999876531 12
Q ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHhccCc
Q psy4083 199 AALDLQSGILHAADEQDFKTAFSYFYEAFEGF 230 (374)
Q Consensus 199 ~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~f 230 (374)
.......|.++. ..++|..|...|-.+.+..
T Consensus 175 ~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~ 205 (252)
T 2ho1_A 175 PSVALEMADLLY-KEREYVPARQYYDLFAQGG 205 (252)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhC
Confidence 234456677788 8999999999998887644
No 50
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=97.39 E-value=0.017 Score=52.56 Aligned_cols=100 Identities=14% Similarity=0.002 Sum_probs=71.8
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCCh---hhhH
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPP---KMQA 199 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~---~~~~ 199 (374)
.++.+|...|++++|++.+.+.+. .... ...++.....++...+++..+..++.++....... .++ .-..
T Consensus 164 ~l~~~~~~~~~~~~A~~~~~~al~----~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~ 236 (330)
T 3hym_B 164 YIGLEYGLTNNSKLAERFFSQALS----IAPE--DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAI-GNEVTVDKWE 236 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHT----TCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTT-SCSCTTTTCC
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH----hCCC--ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhc-cccccccHHH
Confidence 378889999999999877766652 1111 23566777889999999999999999987654221 111 2223
Q ss_pred HHHHHHHHHhhcccccHHHHHHHHHHhccCc
Q psy4083 200 ALDLQSGILHAADEQDFKTAFSYFYEAFEGF 230 (374)
Q Consensus 200 ~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~f 230 (374)
......|.++. ..++|..|...|-.+.+..
T Consensus 237 ~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~ 266 (330)
T 3hym_B 237 PLLNNLGHVCR-KLKKYAEALDYHRQALVLI 266 (330)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHH-HhcCHHHHHHHHHHHHhhC
Confidence 45566788888 8999999999999886643
No 51
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=97.34 E-value=0.012 Score=48.29 Aligned_cols=164 Identities=12% Similarity=0.026 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHH
Q psy4083 39 QNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQ 118 (374)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~ 118 (374)
...+.++..+...|++++..+.+.......+..+.. ...+-..... .+..+.-++.+.+.++....+...|
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~--- 79 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDV-----ALHLGIAYVK-TGAVDRGTELLERSLADAPDNVKVA--- 79 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHH-----HHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHH---
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHH-----HHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHHHH---
Confidence 446677999999999999877776665544333111 1111111111 1223333455544444322121222
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhh
Q psy4083 119 SLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQ 198 (374)
Q Consensus 119 ~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~ 198 (374)
. .+|.++...|++++|++.+.+++.. ... ..+++.....++...+++..+..++..+..... .+
T Consensus 80 -~--~~a~~~~~~~~~~~A~~~~~~~~~~----~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~---- 143 (186)
T 3as5_A 80 -T--VLGLTYVQVQKYDLAVPLLIKVAEA----NPI--NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP---NE---- 143 (186)
T ss_dssp -H--HHHHHHHHHTCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TC----
T ss_pred -H--HHHHHHHHhcCHHHHHHHHHHHHhc----CcH--hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc---cc----
Confidence 2 4788999999999998887776632 111 235667778889999999999999999876531 12
Q ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHhcc
Q psy4083 199 AALDLQSGILHAADEQDFKTAFSYFYEAFE 228 (374)
Q Consensus 199 ~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~ 228 (374)
.......|.++. ..++|..|...|-.+.+
T Consensus 144 ~~~~~~la~~~~-~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 144 GKVHRAIAFSYE-QMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH-HcCCHHHHHHHHHHHHH
Confidence 244556677788 89999999999988754
No 52
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.33 E-value=0.014 Score=51.08 Aligned_cols=137 Identities=12% Similarity=0.032 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhh-hhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHH
Q psy4083 39 QNILQLGEKYKQEGKAIELAELIKKTRPFLS-QISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLR 117 (374)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~-~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr 117 (374)
+.++..+..++..|+|++..+.+.......+ .-+... -.+-.+.-.. +..+.-+..+..+++.. .....
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~~----~~~~~A~~~~~~al~~~----p~~~~ 77 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTA--YNCGVCADNI----KKYKEAADYFDIAIKKN----YNLAN 77 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHH--HHHHHHHHHT----TCHHHHHHHHHHHHHTT----CSHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHH--HHHHHHHHHh----hcHHHHHHHHHHHHHhC----cchHH
Confidence 4567779999999999999888887776654 221111 1111111111 22333344444444322 12233
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy4083 118 QSLEARLIALYFDTGEYTEALKLSSSLLKELKKL-DDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTT 187 (374)
Q Consensus 118 ~~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~-dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~ 187 (374)
... .+|.+|...|++++|++.+.+.++--... .-...+.+++...-.++...+++.+|...+.++...
T Consensus 78 ~~~--~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 78 AYI--GKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HHH--HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHH--HHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 333 58999999999999988887776421110 012335578888889999999999999999998654
No 53
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=97.29 E-value=0.082 Score=48.27 Aligned_cols=172 Identities=9% Similarity=0.026 Sum_probs=110.0
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHHHHH
Q psy4083 42 LQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQSLE 121 (374)
Q Consensus 42 ~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~~l~ 121 (374)
...+..+...|++++..+.+.......+.-+.. ...+-..... .+..+.-+..+.+.++....+.. ...
T Consensus 124 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~----~~~- 192 (359)
T 3ieg_A 124 RSQALDAFDGADYTAAITFLDKILEVCVWDAEL-----RELRAECFIK-EGEPRKAISDLKAASKLKSDNTE----AFY- 192 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-----HHHHHHHHHH-TTCHHHHHHHHHHHHTTCSCCHH----HHH-
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCchHH-----HHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHH----HHH-
Confidence 344889999999999988888877665544221 1111111111 12233334444444432211112 222
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHHHhcc------chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCCh
Q psy4083 122 ARLIALYFDTGEYTEALKLSSSLLKELKKLDD------KNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPP 195 (374)
Q Consensus 122 ~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd------~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~ 195 (374)
.+|.++...|++++|++.+.+.++.-..... ....++..+.....+...+++..+...+..+..... .++
T Consensus 193 -~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~ 268 (359)
T 3ieg_A 193 -KISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP---SVA 268 (359)
T ss_dssp -HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC---SSH
T ss_pred -HHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---Cch
Confidence 5788999999999998888777642111100 111233345667889999999999999999877641 356
Q ss_pred hhhHHHHHHHHHHhhcccccHHHHHHHHHHhccC
Q psy4083 196 KMQAALDLQSGILHAADEQDFKTAFSYFYEAFEG 229 (374)
Q Consensus 196 ~~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~ 229 (374)
.........-|.++. ..++|..|...|-.+.+.
T Consensus 269 ~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~ 301 (359)
T 3ieg_A 269 EYTVRSKERICHCFS-KDEKPVEAIRICSEVLQM 301 (359)
T ss_dssp HHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHh
Confidence 666666777888888 999999999999988764
No 54
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=97.27 E-value=0.02 Score=49.75 Aligned_cols=164 Identities=9% Similarity=-0.017 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHHH
Q psy4083 40 NILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQS 119 (374)
Q Consensus 40 ~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~~ 119 (374)
+.+.++..+...|++++..+.+.......+..+... ..+-.+.-.. +..+.-++.+.+.++....+... .
T Consensus 59 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~la~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~----~ 128 (243)
T 2q7f_A 59 PYINFANLLSSVNELERALAFYDKALELDSSAATAY--YGAGNVYVVK----EMYKEAKDMFEKALRAGMENGDL----F 128 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH--HHHHHHHHHT----TCHHHHHHHHHHHHHHTCCSHHH----H
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHH--HHHHHHHHHh----ccHHHHHHHHHHHHHhCCCCHHH----H
Confidence 455667777777777777766666655443321111 1111111111 21233344444444432212121 1
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhH
Q psy4083 120 LEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQA 199 (374)
Q Consensus 120 l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~ 199 (374)
. .+|.++...|++++|++.+.+.+.. ... ..+++.....++...+++..+...+..+..... .+ .
T Consensus 129 ~--~~a~~~~~~~~~~~A~~~~~~~~~~----~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~----~ 193 (243)
T 2q7f_A 129 Y--MLGTVLVKLEQPKLALPYLQRAVEL----NEN--DTEARFQFGMCLANEGMLDEALSQFAAVTEQDP---GH----A 193 (243)
T ss_dssp H--HHHHHHHHTSCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCT---TC----H
T ss_pred H--HHHHHHHHhccHHHHHHHHHHHHHh----CCc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---cc----H
Confidence 2 4677788888888887766665531 111 124556667777788888888888877755421 11 2
Q ss_pred HHHHHHHHHhhcccccHHHHHHHHHHhccC
Q psy4083 200 ALDLQSGILHAADEQDFKTAFSYFYEAFEG 229 (374)
Q Consensus 200 ~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~ 229 (374)
.....-|.++. ..++|..|...|-.+.+.
T Consensus 194 ~~~~~la~~~~-~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 194 DAFYNAGVTYA-YKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHH-HTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HccCHHHHHHHHHHHHcc
Confidence 23455566677 778888888877777553
No 55
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=97.25 E-value=0.016 Score=53.84 Aligned_cols=93 Identities=18% Similarity=0.100 Sum_probs=70.6
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHH
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALD 202 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~ 202 (374)
.+|.+|...|++++|+..+.+.+.. +.. ..+.+.....++...|++..+...+.++.... |. .....
T Consensus 222 ~l~~~~~~~g~~~~A~~~~~~al~~----~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------~~-~~~~~ 288 (368)
T 1fch_A 222 GLGVLFNLSGEYDKAVDCFTAALSV----RPN--DYLLWNKLGATLANGNQSEEAVAAYRRALELQ------PG-YIRSR 288 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TT-CHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh----CcC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CC-cHHHH
Confidence 5788999999999998888777642 111 13567777888999999999999999987653 11 12345
Q ss_pred HHHHHHhhcccccHHHHHHHHHHhccC
Q psy4083 203 LQSGILHAADEQDFKTAFSYFYEAFEG 229 (374)
Q Consensus 203 ~~~G~~~~~~~rdy~~A~~~F~eaf~~ 229 (374)
..-|.++. ..++|..|...|-.+.+.
T Consensus 289 ~~l~~~~~-~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 289 YNLGISCI-NLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHH-HHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHh
Confidence 56678888 899999999999888653
No 56
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=97.24 E-value=0.011 Score=59.09 Aligned_cols=100 Identities=14% Similarity=-0.074 Sum_probs=74.1
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHH
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALD 202 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~ 202 (374)
.++..|...|++++|++.+.+++. .... -.+.+.....++...|++..|..++.++.......-.+|.......
T Consensus 446 ~l~~~~~~~g~~~~A~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~ 519 (597)
T 2xpi_A 446 FLGMQHMQLGNILLANEYLQSSYA----LFQY--DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATW 519 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH----HCCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH----hCCC--ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHH
Confidence 477888899999999887777653 1111 2356777888999999999999999998765322123555445666
Q ss_pred HHHHHHhhcccccHHHHHHHHHHhccC
Q psy4083 203 LQSGILHAADEQDFKTAFSYFYEAFEG 229 (374)
Q Consensus 203 ~~~G~~~~~~~rdy~~A~~~F~eaf~~ 229 (374)
...|.++. ..|+|..|...|-.+.+.
T Consensus 520 ~~l~~~~~-~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 520 ANLGHAYR-KLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HhcCHHHHHHHHHHHHHh
Confidence 77788888 899999999999888653
No 57
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.22 E-value=0.0078 Score=55.37 Aligned_cols=112 Identities=8% Similarity=0.002 Sum_probs=86.5
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHH
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALD 202 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~ 202 (374)
.++.++...|++++|++.+.+.+.......+....+.++.....+|...+++.+|..++.+|.........++.....+.
T Consensus 120 ~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 199 (293)
T 3u3w_A 120 YVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVR 199 (293)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHH
Confidence 47888999999999999988887532233444556777888888999999999999999999875543324566667777
Q ss_pred HHHHHHhhcccccHHHHHHHHHHhccCcCcccc
Q psy4083 203 LQSGILHAADEQDFKTAFSYFYEAFEGFSTVDH 235 (374)
Q Consensus 203 ~~~G~~~~~~~rdy~~A~~~F~eaf~~f~~~~~ 235 (374)
-..|.++. ..++|.+|..+|-++.+-....++
T Consensus 200 ~nlg~~y~-~~~~y~~A~~~~~~al~~~~~~~~ 231 (293)
T 3u3w_A 200 YNHAKALY-LDSRYEESLYQVNKAIEISCRINS 231 (293)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHH-HHhHHHHHHHHHHHHHHHHHHcCc
Confidence 88888899 999999999999998664443333
No 58
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=97.21 E-value=0.017 Score=54.05 Aligned_cols=96 Identities=13% Similarity=0.035 Sum_probs=54.4
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHH
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALD 202 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~ 202 (374)
.++.++...|++++|++.+.+.+.. +......+++.....++...|++..+..++.++..... .+ ....
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---~~----~~~~ 250 (365)
T 4eqf_A 182 RMSKSPVDSSVLEGVKELYLEAAHQ----NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP---ED----YSLW 250 (365)
T ss_dssp -------CCHHHHHHHHHHHHHHHH----SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TC----HHHH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHh----CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CC----HHHH
Confidence 3577777778888887766666532 11111234555666777777788887777777765421 11 2234
Q ss_pred HHHHHHhhcccccHHHHHHHHHHhccCc
Q psy4083 203 LQSGILHAADEQDFKTAFSYFYEAFEGF 230 (374)
Q Consensus 203 ~~~G~~~~~~~rdy~~A~~~F~eaf~~f 230 (374)
..-|.++. ..++|..|...|-.+.+..
T Consensus 251 ~~l~~~~~-~~g~~~~A~~~~~~al~~~ 277 (365)
T 4eqf_A 251 NRLGATLA-NGDRSEEAVEAYTRALEIQ 277 (365)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHhcC
Confidence 45566666 7777777777777776543
No 59
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=97.21 E-value=0.023 Score=49.93 Aligned_cols=169 Identities=13% Similarity=-0.025 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHH
Q psy4083 39 QNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQ 118 (374)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~ 118 (374)
.+.+.++..+...|++++..+.+.......+..+.. ...+-..+.. .+..+.-++.+.+.++ .. ........
T Consensus 72 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-----~~~la~~~~~-~g~~~~A~~~~~~~~~-~~-~~~~~~~~ 143 (252)
T 2ho1_A 72 DAHAALAVVFQTEMEPKLADEEYRKALASDSRNARV-----LNNYGGFLYE-QKRYEEAYQRLLEASQ-DT-LYPERSRV 143 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-----HHHHHHHHHH-TTCHHHHHHHHHHHTT-CT-TCTTHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHH-----HHHHHHHHHH-HhHHHHHHHHHHHHHh-Cc-cCcccHHH
Confidence 356778999999999999988888877665443221 1111111111 1223333444444443 00 11111222
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhh
Q psy4083 119 SLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQ 198 (374)
Q Consensus 119 ~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~ 198 (374)
.. .+|.++...|++++|++.+.+.++. ... ..+.+.....++...+++..+..++..+..... .++
T Consensus 144 ~~--~la~~~~~~g~~~~A~~~~~~~~~~----~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~~--- 209 (252)
T 2ho1_A 144 FE--NLGLVSLQMKKPAQAKEYFEKSLRL----NRN--QPSVALEMADLLYKEREYVPARQYYDLFAQGGG---QNA--- 209 (252)
T ss_dssp HH--HHHHHHHHTTCHHHHHHHHHHHHHH----CSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSC---CCH---
T ss_pred HH--HHHHHHHHcCCHHHHHHHHHHHHhc----Ccc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---CcH---
Confidence 22 5788999999999998888776632 211 245677788899999999999999998865421 122
Q ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHhccCcC
Q psy4083 199 AALDLQSGILHAADEQDFKTAFSYFYEAFEGFS 231 (374)
Q Consensus 199 ~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~f~ 231 (374)
......|.++. ..+++..|...|-.+.+.+.
T Consensus 210 -~~~~~~~~~~~-~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 210 -RSLLLGIRLAK-VFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp -HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCT
T ss_pred -HHHHHHHHHHH-HccCHHHHHHHHHHHHHHCC
Confidence 23345566677 88999999998888766443
No 60
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.16 E-value=0.011 Score=46.49 Aligned_cols=101 Identities=16% Similarity=0.122 Sum_probs=75.9
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHH
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALD 202 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~ 202 (374)
.+|..++..|+|++|++.+.++++. ..+.....+.+.....++...|++..+...+..+.... ++........
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~~ 79 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY----PTHDKAAGGL 79 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTSTTHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC----CCCcccHHHH
Confidence 4788899999999998888777632 22233444677788889999999999999999886652 2222223445
Q ss_pred HHHHHHhhcccccHHHHHHHHHHhccCcC
Q psy4083 203 LQSGILHAADEQDFKTAFSYFYEAFEGFS 231 (374)
Q Consensus 203 ~~~G~~~~~~~rdy~~A~~~F~eaf~~f~ 231 (374)
...|.++. ..++|..|...|-.+.+.+.
T Consensus 80 ~~la~~~~-~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 80 LKLGLSQY-GEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHHCC
Confidence 56688888 89999999999998877664
No 61
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=97.11 E-value=0.043 Score=48.15 Aligned_cols=166 Identities=13% Similarity=-0.039 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHH--HHHHHHHHHhhcc---ccchhhhHHHHHHHHHHHHHhhHH
Q psy4083 40 NILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAA--KLVRSLVDFFLDL---ETRTGMEVALCKECIEWAKEERRT 114 (374)
Q Consensus 40 ~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~--k~i~~ild~~~~~---~~~~~~~~~l~~e~i~~~~~~~r~ 114 (374)
+.+.++..+...|++++..+.+......-|..+.+... .+....-...... .+..+.-+..+...++-..+
T Consensus 41 a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~---- 116 (217)
T 2pl2_A 41 ALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR---- 116 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc----
Confidence 34566888888888888877777766665544332211 1111110000000 01112223333333332111
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCC
Q psy4083 115 FLRQSLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCP 194 (374)
Q Consensus 115 ~lr~~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~ 194 (374)
+..... .+|.+|...|++++|+..+.+.++. + .-.+.+..-..++...|++..+...+.++..... .+
T Consensus 117 ~~~~~~--~lg~~~~~~g~~~~A~~~~~~al~~----~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P---~~ 184 (217)
T 2pl2_A 117 YAPLHL--QRGLVYALLGERDKAEASLKQALAL----E---DTPEIRSALAELYLSMGRLDEALAQYAKALEQAP---KD 184 (217)
T ss_dssp CHHHHH--HHHHHHHHTTCHHHHHHHHHHHHHH----C---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST---TC
T ss_pred cHHHHH--HHHHHHHHcCChHHHHHHHHHHHhc----c---cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CC
Confidence 122223 5788999999999999988887642 2 2346677788889999999999999999876521 22
Q ss_pred hhhhHHHHHHHHHHhhcccccHHHHHHHHHHh
Q psy4083 195 PKMQAALDLQSGILHAADEQDFKTAFSYFYEA 226 (374)
Q Consensus 195 ~~~~~~i~~~~G~~~~~~~rdy~~A~~~F~ea 226 (374)
+ .....-|.++. ..|+|.+|...|-.+
T Consensus 185 ~----~~~~~la~~~~-~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 185 L----DLRVRYASALL-LKGKAEEAARAAALE 211 (217)
T ss_dssp H----HHHHHHHHHHT-C--------------
T ss_pred h----HHHHHHHHHHH-HccCHHHHHHHHHHH
Confidence 2 33345577788 899999998777554
No 62
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.11 E-value=0.0058 Score=47.44 Aligned_cols=101 Identities=13% Similarity=0.111 Sum_probs=76.3
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHH
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALD 202 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~ 202 (374)
.+|..+...|++++|+..+.+.+.. +.. ..+++.....++...+++..+..++.++.........++.......
T Consensus 9 ~l~~~~~~~~~~~~A~~~~~~a~~~----~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 9 ELGNDAYKKKDFDTALKHYDKAKEL----DPT--NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhc----CCc--cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 5788999999999999888777642 211 2456777788899999999999999998766422112333335666
Q ss_pred HHHHHHhhcccccHHHHHHHHHHhccCc
Q psy4083 203 LQSGILHAADEQDFKTAFSYFYEAFEGF 230 (374)
Q Consensus 203 ~~~G~~~~~~~rdy~~A~~~F~eaf~~f 230 (374)
...|.++. ..++|..|...|-.+.+..
T Consensus 83 ~~la~~~~-~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 83 ARIGNSYF-KEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHH-HhccHHHHHHHHHHHHHhC
Confidence 77788889 9999999999999887644
No 63
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=97.10 E-value=0.05 Score=52.11 Aligned_cols=98 Identities=11% Similarity=-0.035 Sum_probs=74.2
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHH
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALD 202 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~ 202 (374)
.++..+...|++++|++.+.+++.. ..++.....+.+.....++...|++..|...+.++..... .++ ...
T Consensus 262 ~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p---~~~----~~~ 332 (450)
T 2y4t_A 262 ESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP---DNV----NAL 332 (450)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT---TCH----HHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc---ccH----HHH
Confidence 3588999999999999888877641 1123444567888889999999999999999999866521 122 344
Q ss_pred HHHHHHhhcccccHHHHHHHHHHhccCc
Q psy4083 203 LQSGILHAADEQDFKTAFSYFYEAFEGF 230 (374)
Q Consensus 203 ~~~G~~~~~~~rdy~~A~~~F~eaf~~f 230 (374)
..-|.++. ..++|..|...|-.+.+-.
T Consensus 333 ~~l~~~~~-~~~~~~~A~~~~~~al~~~ 359 (450)
T 2y4t_A 333 KDRAEAYL-IEEMYDEAIQDYETAQEHN 359 (450)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHH-HhcCHHHHHHHHHHHHHhC
Confidence 55677778 8999999999999887743
No 64
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=97.09 E-value=0.043 Score=53.26 Aligned_cols=100 Identities=15% Similarity=0.162 Sum_probs=66.0
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHhhccccCCChhhhH
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHA---LSNLSTSRASLTSARTTANSIYCPPKMQA 199 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~---~~n~~~a~~~~~~a~~~~~~~~~~~~~~~ 199 (374)
.+|.++...|++++|+..+.+.+..-....+.......+.....++.. .|++..+..++.++..... .+ .
T Consensus 377 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~---~~----~ 449 (514)
T 2gw1_A 377 FFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP---RS----E 449 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT---TC----H
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc---cc----H
Confidence 467788888888888877777764322222222224466667777888 8888888888888765421 11 2
Q ss_pred HHHHHHHHHhhcccccHHHHHHHHHHhccCc
Q psy4083 200 ALDLQSGILHAADEQDFKTAFSYFYEAFEGF 230 (374)
Q Consensus 200 ~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~f 230 (374)
......|.++. ..++|..|...|-.+.+..
T Consensus 450 ~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 450 QAKIGLAQMKL-QQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHH-HhcCHHHHHHHHHHHHHhc
Confidence 33445667777 7888888888888776543
No 65
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=97.08 E-value=0.11 Score=48.42 Aligned_cols=172 Identities=16% Similarity=0.083 Sum_probs=102.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHHHH
Q psy4083 41 ILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQSL 120 (374)
Q Consensus 41 ~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~~l 120 (374)
.+.++..++..|++++..+.+.......+..+.. ...+-..... .+..+.-+..+...++....+ .....
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~-----~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~----~~~~~ 137 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEA-----WQFLGITQAE-NENEQAAIVALQRCLELQPNN----LKALM 137 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH-----HHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC----HHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHH-----HHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCC----HHHHH
Confidence 4566899999999999999888887766554222 1222221211 122344455555555432212 12222
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccch----hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChh
Q psy4083 121 EARLIALYFDTGEYTEALKLSSSLLKELKKLDDKN----LLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPK 196 (374)
Q Consensus 121 ~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~----~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~ 196 (374)
.+|.+|...|++++|++.+.+.++.-....+.. ....+......++...+++..+..++.++..... + .
T Consensus 138 --~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p----~-~ 210 (365)
T 4eqf_A 138 --ALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNG----D-M 210 (365)
T ss_dssp --HHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSC----S-S
T ss_pred --HHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCc----C-c
Confidence 578899999999999998888875322221111 1233444456778889999999999999877631 1 1
Q ss_pred hhHHHHHHHHHHhhcccccHHHHHHHHHHhccCc
Q psy4083 197 MQAALDLQSGILHAADEQDFKTAFSYFYEAFEGF 230 (374)
Q Consensus 197 ~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~f 230 (374)
........-|.++. ..++|.+|...|-.+.+..
T Consensus 211 ~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~ 243 (365)
T 4eqf_A 211 IDPDLQTGLGVLFH-LSGEFNRAIDAFNAALTVR 243 (365)
T ss_dssp CCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhC
Confidence 12334556688888 8999999999999987643
No 66
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=97.08 E-value=0.034 Score=55.55 Aligned_cols=99 Identities=11% Similarity=0.072 Sum_probs=76.6
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHH
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKL-DDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAAL 201 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~-dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i 201 (374)
.++.+|...|++++|++.+.+++...... .++....+++.....++...|++..+...+.++.... ..++ ..
T Consensus 480 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~~~----~~ 552 (597)
T 2xpi_A 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS---TNDA----NV 552 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---SCCH----HH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCCh----HH
Confidence 58889999999999999998887644432 2344447788888999999999999999999987652 1122 44
Q ss_pred HHHHHHHhhcccccHHHHHHHHHHhccC
Q psy4083 202 DLQSGILHAADEQDFKTAFSYFYEAFEG 229 (374)
Q Consensus 202 ~~~~G~~~~~~~rdy~~A~~~F~eaf~~ 229 (374)
...-|.++. ..|+|.+|...|-.+++-
T Consensus 553 ~~~l~~~~~-~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 553 HTAIALVYL-HKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HhCCHHHHHHHHHHHHhc
Confidence 455667778 899999999999888663
No 67
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=97.02 E-value=0.015 Score=51.68 Aligned_cols=169 Identities=8% Similarity=-0.004 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHH
Q psy4083 39 QNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQ 118 (374)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~ 118 (374)
++++..+..++..|++++..+.+.......+.-+........ +.-.. +..+.-++.+...++.. .+.......
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~--~~~~~----~~~~~A~~~~~~a~~~~-~~~~~~~~~ 76 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAV--CYYEL----AKYDLAQKDIETYFSKV-NATKAKSAD 76 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHH--HHHHT----TCHHHHHHHHHHHHTTS-CTTTCCHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH--HHHHH----hhHHHHHHHHHHHHhcc-CchhHHHHH
Confidence 456788999999999999988888877665544322211111 11111 22344455555555421 121222233
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhh
Q psy4083 119 SLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQ 198 (374)
Q Consensus 119 ~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~ 198 (374)
.. .+|.+|...|++++|++.+.+.+.. +. ...+++.....++...|++.++..++.++... +|..
T Consensus 77 ~~--~lg~~~~~~~~~~~A~~~~~~a~~~----~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------~~~~- 141 (272)
T 3u4t_A 77 FE--YYGKILMKKGQDSLAIQQYQAAVDR----DT--TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP------TTTD- 141 (272)
T ss_dssp HH--HHHHHHHHTTCHHHHHHHHHHHHHH----ST--TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS------SCCC-
T ss_pred HH--HHHHHHHHcccHHHHHHHHHHHHhc----Cc--ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc------CCCc-
Confidence 33 5899999999999999888877641 11 12356778888999999999999999887544 2222
Q ss_pred HHHHHHHH-HHhhcccccHHHHHHHHHHhccCcC
Q psy4083 199 AALDLQSG-ILHAADEQDFKTAFSYFYEAFEGFS 231 (374)
Q Consensus 199 ~~i~~~~G-~~~~~~~rdy~~A~~~F~eaf~~f~ 231 (374)
......-| ..+. .++|..|...|-.+.+...
T Consensus 142 ~~~~~~l~~~~~~--~~~~~~A~~~~~~a~~~~p 173 (272)
T 3u4t_A 142 PKVFYELGQAYYY--NKEYVKADSSFVKVLELKP 173 (272)
T ss_dssp HHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhCc
Confidence 22334455 4444 5699999999998876443
No 68
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=96.98 E-value=0.052 Score=46.17 Aligned_cols=166 Identities=10% Similarity=0.003 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHHH
Q psy4083 40 NILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQS 119 (374)
Q Consensus 40 ~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~~ 119 (374)
+.+.++..+...|++++..+.+.......+..+. ....+-.......+..+.-+..+...++ .. .........
T Consensus 44 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~ 116 (225)
T 2vq2_A 44 AWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAE-----INNNYGWFLCGRLNRPAESMAYFDKALA-DP-TYPTPYIAN 116 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----HHHHHHHHHHTTTCCHHHHHHHHHHHHT-ST-TCSCHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH-----HHHHHHHHHHHhcCcHHHHHHHHHHHHc-Cc-CCcchHHHH
Confidence 5667799999999999998888877766544322 1122222222210223444555544444 10 111111222
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhH
Q psy4083 120 LEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQA 199 (374)
Q Consensus 120 l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~ 199 (374)
. .+|.++...|++++|+..+.+.++. +.. ..+.+.....++...+++..+..++..+...... .++
T Consensus 117 ~--~l~~~~~~~~~~~~A~~~~~~~~~~----~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~---- 182 (225)
T 2vq2_A 117 L--NKGICSAKQGQFGLAEAYLKRSLAA----QPQ--FPPAFKELARTKMLAGQLGDADYYFKKYQSRVEV--LQA---- 182 (225)
T ss_dssp H--HHHHHHHHTTCHHHHHHHHHHHHHH----STT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS--CCH----
T ss_pred H--HHHHHHHHcCCHHHHHHHHHHHHHh----CCC--CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CCH----
Confidence 2 4788999999999998888777642 111 1456777788899999999999999998765310 122
Q ss_pred HHHHHHHHHhhcccccHHHHHHHHHHhc
Q psy4083 200 ALDLQSGILHAADEQDFKTAFSYFYEAF 227 (374)
Q Consensus 200 ~i~~~~G~~~~~~~rdy~~A~~~F~eaf 227 (374)
......+.++. ..+++..|..++-.+.
T Consensus 183 ~~~~~~~~~~~-~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 183 DDLLLGWKIAK-ALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hcCcHHHHHHHHHHHH
Confidence 22345666667 7888887766554443
No 69
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=96.93 E-value=0.054 Score=47.48 Aligned_cols=162 Identities=17% Similarity=0.117 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHHH
Q psy4083 40 NILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQS 119 (374)
Q Consensus 40 ~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~~ 119 (374)
+.+.++..+.+.|++++....+......-|.-+.+... .-.+.... +..+.-+..+...++-..++ ....
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~--lg~~~~~~----g~~~~A~~~~~~al~~~P~~----~~a~ 76 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYW--LARTQLKL----GLVNPALENGKTLVARTPRY----LGGY 76 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHH--HHHHHHHT----TCHHHHHHHHHHHHHHCTTC----HHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHc----CCHHHHHHHHHHHHHhCCCc----HHHH
Confidence 35677999999999999988887777665554332221 11111111 22333344554444432211 2222
Q ss_pred HHHHHHHHHHhc-----------cCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q psy4083 120 LEARLIALYFDT-----------GEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTA 188 (374)
Q Consensus 120 l~~kLa~~~~~~-----------g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~ 188 (374)
. .+|.++... |++++|+..+.+.++ .+.. -.+.+.....++...|++..+...+.++....
T Consensus 77 ~--~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~----~~P~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 148 (217)
T 2pl2_A 77 M--VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER----VNPR--YAPLHLQRGLVYALLGERDKAEASLKQALALE 148 (217)
T ss_dssp H--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH----HCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred H--HHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH----hCcc--cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence 2 477788888 999999888877763 1211 23566777888999999999999999987763
Q ss_pred cccCCChhhhHHHHHHHHHHhhcccccHHHHHHHHHHhcc
Q psy4083 189 NSIYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFE 228 (374)
Q Consensus 189 ~~~~~~~~~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~ 228 (374)
.+|. ....-|.++. ..|+|..|...|-.+.+
T Consensus 149 ----~~~~----~~~~la~~~~-~~g~~~~A~~~~~~al~ 179 (217)
T 2pl2_A 149 ----DTPE----IRSALAELYL-SMGRLDEALAQYAKALE 179 (217)
T ss_dssp ----CCHH----HHHHHHHHHH-HHTCHHHHHHHHHHHHH
T ss_pred ----cchH----HHHHHHHHHH-HcCCHHHHHHHHHHHHH
Confidence 2333 3446677888 89999999999988865
No 70
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=96.92 E-value=0.21 Score=46.15 Aligned_cols=94 Identities=13% Similarity=0.136 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHHHH
Q psy4083 41 ILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQSL 120 (374)
Q Consensus 41 ~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~~l 120 (374)
.+.++..++..|++++..+.+.......+..+.... .+-..... .+..+.-++.+...++....+.. ...
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-----~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~----~~~ 136 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQ-----YLGTTQAE-NEQELLAISALRRCLELKPDNQT----ALM 136 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHH-----HHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHH----HHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHH-CcCHHHHHHHHHHHHhcCCCCHH----HHH
Confidence 456799999999999998888887766554432221 11111111 12233334444444443221111 222
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHH
Q psy4083 121 EARLIALYFDTGEYTEALKLSSSLLK 146 (374)
Q Consensus 121 ~~kLa~~~~~~g~~~~Al~~~~~ll~ 146 (374)
.+|.+|...|++++|++.+.+.+.
T Consensus 137 --~l~~~~~~~g~~~~A~~~~~~~~~ 160 (368)
T 1fch_A 137 --ALAVSFTNESLQRQACEILRDWLR 160 (368)
T ss_dssp --HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788888888888777776653
No 71
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=96.91 E-value=0.31 Score=46.45 Aligned_cols=173 Identities=9% Similarity=0.035 Sum_probs=113.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHHHH
Q psy4083 41 ILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQSL 120 (374)
Q Consensus 41 ~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~~l 120 (374)
.+.++..++..|++++..+.+.......+.-+. ....+.+.+... +..+.-++.+.+.++....+-. ...
T Consensus 146 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~----~~~ 215 (450)
T 2y4t_A 146 LRSQALNAFGSGDYTAAIAFLDKILEVCVWDAE-----LRELRAECFIKE-GEPRKAISDLKAASKLKNDNTE----AFY 215 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH-----HHHHHHHHHHHT-TCGGGGHHHHHHHHHHHCSCHH----HHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH-----HHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCCHH----HHH
Confidence 455688899999999998888887765544322 122222222211 2234445566555553321212 222
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcc------chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCC
Q psy4083 121 EARLIALYFDTGEYTEALKLSSSLLKELKKLDD------KNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCP 194 (374)
Q Consensus 121 ~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd------~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~ 194 (374)
.++.+|...|++++|++.+.+++..-..... ....++..+.....+...+++..+..++.++.... ..+
T Consensus 216 --~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~---p~~ 290 (450)
T 2y4t_A 216 --KISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE---PSI 290 (450)
T ss_dssp --HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CSS
T ss_pred --HHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---Ccc
Confidence 5788999999999999888877632111000 01122333555788999999999999999987763 135
Q ss_pred hhhhHHHHHHHHHHhhcccccHHHHHHHHHHhccC
Q psy4083 195 PKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEG 229 (374)
Q Consensus 195 ~~~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~ 229 (374)
|........+.|.++. ..++|.+|...|-.+.+.
T Consensus 291 ~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~ 324 (450)
T 2y4t_A 291 AEYTVRSKERICHCFS-KDEKPVEAIRVCSEVLQM 324 (450)
T ss_dssp HHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHh
Confidence 6666678888899999 999999999999888653
No 72
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=96.91 E-value=0.11 Score=45.68 Aligned_cols=181 Identities=8% Similarity=-0.065 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHh-------
Q psy4083 39 QNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEE------- 111 (374)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~------- 111 (374)
+.++..+..+++.|+|++..+.+..+....+.-+.. ....-.+-...-. .+..+.-++.+...++--.++
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~--~~a~~~lg~~~~~-~~~~~~A~~~~~~~l~~~P~~~~~~~a~ 81 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYS--QQVQLDLIYAYYK-NADLPLAQAAIDRFIRLNPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTH--HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH--HHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHCcCCCcHHHHH
Confidence 456788999999999999988888887655433211 1111111111100 011222233333333211101
Q ss_pred ----------hHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccc-----------hhHHHHHHHHHHHHHH
Q psy4083 112 ----------RRTFLRQSLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDK-----------NLLVEVLLLESKTYHA 170 (374)
Q Consensus 112 ----------~r~~lr~~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~-----------~~~lev~l~ei~l~~~ 170 (374)
++.++.... .++..+.+.|++++|+..+.++++........ ..+-+..+...+++..
T Consensus 82 ~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~ 159 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFF--GVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTE 159 (225)
T ss_dssp HHHHHHHHHHHC----------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhh--ccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111111 23455566889999998888777432221100 0111222455678889
Q ss_pred hCCHHHHHHHHHHHHhhccccCCChhhhHHHHHHHHHHhhcccccHHHHHHHHHHhccC
Q psy4083 171 LSNLSTSRASLTSARTTANSIYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEG 229 (374)
Q Consensus 171 ~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~ 229 (374)
.+++..+...+..+...- ++...........|..+. ..|++..|...|-.....
T Consensus 160 ~~~~~~A~~~~~~~l~~~----p~~~~~~~a~~~l~~~~~-~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 160 RGAWVAVVNRVEGMLRDY----PDTQATRDALPLMENAYR-QMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HTCHHHHHHHHHHHHHHS----TTSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHC
T ss_pred cCcHHHHHHHHHHHHHHC----cCCCccHHHHHHHHHHHH-HcCCcHHHHHHHHHHHhh
Confidence 999999999998876542 333333345566788888 889999998887665443
No 73
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=96.90 E-value=0.15 Score=44.61 Aligned_cols=136 Identities=12% Similarity=0.119 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHH---------------------------------HH---HHHHH
Q psy4083 39 QNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAK---------------------------------AA---KLVRS 82 (374)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~---------------------------------~~---k~i~~ 82 (374)
.+.+.++..+++.|+|++..+.+..+....|.-+... .. +..++
T Consensus 42 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 121 (225)
T 2yhc_A 42 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSK 121 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHH
Confidence 5677889999999999999998888877765543311 11 12222
Q ss_pred HHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHH
Q psy4083 83 LVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQSLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLL 162 (374)
Q Consensus 83 ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l 162 (374)
+++.. |++.... .....+.... ...-...+ .+|.+|+..|++.+|+..+.++++. ..+....-+...
T Consensus 122 ~l~~~---P~~~~a~--~a~~~l~~~~---~~~~~~~~--~~a~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~ 188 (225)
T 2yhc_A 122 LVRGY---PNSQYTT--DATKRLVFLK---DRLAKYEY--SVAEYYTERGAWVAVVNRVEGMLRD---YPDTQATRDALP 188 (225)
T ss_dssp HHTTC---TTCTTHH--HHHHHHHHHH---HHHHHHHH--HHHHHHHHHTCHHHHHHHHHHHHHH---STTSHHHHHHHH
T ss_pred HHHHC---cCChhHH--HHHHHHHHHH---HHHHHHHH--HHHHHHHHcCcHHHHHHHHHHHHHH---CcCCCccHHHHH
Confidence 22222 2211100 0001111111 00011112 5799999999999999988888742 222334457888
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhh
Q psy4083 163 LESKTYHALSNLSTSRASLTSARTT 187 (374)
Q Consensus 163 ~ei~l~~~~~n~~~a~~~~~~a~~~ 187 (374)
....++..+|++..+...+..+...
T Consensus 189 ~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 189 LMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 8899999999999999999876554
No 74
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=96.89 E-value=0.0096 Score=48.07 Aligned_cols=92 Identities=12% Similarity=0.129 Sum_probs=72.5
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHH
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALD 202 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~ 202 (374)
.+|..|++.|+|++|++.+.+.++ .+. .-.+++.....++..+|++..+...+.+|..+. |.- ....
T Consensus 18 ~~G~~~~~~g~~~~A~~~~~~al~----~~p--~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------p~~-~~a~ 84 (126)
T 4gco_A 18 NKGNEYFKKGDYPTAMRHYNEAVK----RDP--ENAILYSNRAACLTKLMEFQRALDDCDTCIRLD------SKF-IKGY 84 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH----HCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTC-HHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH----hCC--CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh------hhh-hHHH
Confidence 479999999999999999988774 122 124677788899999999999999999987763 211 2344
Q ss_pred HHHHHHhhcccccHHHHHHHHHHhcc
Q psy4083 203 LQSGILHAADEQDFKTAFSYFYEAFE 228 (374)
Q Consensus 203 ~~~G~~~~~~~rdy~~A~~~F~eaf~ 228 (374)
..-|.++. ..++|.+|...|-.+.+
T Consensus 85 ~~lg~~~~-~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 85 IRKAACLV-AMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHH
Confidence 56688888 89999999999998865
No 75
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=96.88 E-value=0.012 Score=51.13 Aligned_cols=165 Identities=15% Similarity=0.050 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHH
Q psy4083 39 QNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQ 118 (374)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~ 118 (374)
...+.++..++..|++++..+.+.......+..+.... .+-.+.-.. +..+.-++.+...++....+.. .
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~--~la~~~~~~----~~~~~A~~~~~~~~~~~~~~~~----~ 93 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYI--NFANLLSSV----NELERALAFYDKALELDSSAAT----A 93 (243)
T ss_dssp ------------------CCTTHHHHHTTCTTCHHHHH--HHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHH----H
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHH--HHHHHHHHc----CCHHHHHHHHHHHHHcCCcchH----H
Confidence 34566699999999999998888877665444322111 111111111 2234445555444443221212 2
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhh
Q psy4083 119 SLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQ 198 (374)
Q Consensus 119 ~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~ 198 (374)
.. .++.++...|++++|++.+.++++. ... ..+++.....++...+++..+..++.++..... .++
T Consensus 94 ~~--~la~~~~~~~~~~~A~~~~~~~~~~----~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~--- 159 (243)
T 2q7f_A 94 YY--GAGNVYVVKEMYKEAKDMFEKALRA----GME--NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE---NDT--- 159 (243)
T ss_dssp HH--HHHHHHHHTTCHHHHHHHHHHHHHH----TCC--SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT---TCH---
T ss_pred HH--HHHHHHHHhccHHHHHHHHHHHHHh----CCC--CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC---ccH---
Confidence 22 4788999999999998888777642 211 134677778899999999999999999876531 122
Q ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHhccC
Q psy4083 199 AALDLQSGILHAADEQDFKTAFSYFYEAFEG 229 (374)
Q Consensus 199 ~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~ 229 (374)
......|.++. ..++|..|...|-.+.+.
T Consensus 160 -~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~ 188 (243)
T 2q7f_A 160 -EARFQFGMCLA-NEGMLDEALSQFAAVTEQ 188 (243)
T ss_dssp -HHHHHHHHHHH-HHTCCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Confidence 34556778888 899999999999888654
No 76
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=96.87 E-value=0.042 Score=46.02 Aligned_cols=130 Identities=14% Similarity=0.110 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHHH
Q psy4083 40 NILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQS 119 (374)
Q Consensus 40 ~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~~ 119 (374)
+.+.++.++.+.|++++..+.+.......+..+..... .-.+.... +..+.-...+...++....+ ....
T Consensus 41 ~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----~~~~~a~~~~~~a~~~~~~~----~~~~ 110 (184)
T 3vtx_A 41 TLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYI--LGSANFMI----DEKQAAIDALQRAIALNTVY----ADAY 110 (184)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHH--HHHHHHHT----TCHHHHHHHHHHHHHHCTTC----HHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHH--HHHHHHHc----CCHHHHHHHHHHHHHhCccc----hHHH
Confidence 46778999999999999988888777666554332211 11111111 11233333443433322211 1222
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy4083 120 LEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTT 187 (374)
Q Consensus 120 l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~ 187 (374)
. .+|.+|...|++++|++.+.+.++ .+. .-.+.+.....++...|++.+|...+.+|...
T Consensus 111 ~--~lg~~~~~~g~~~~A~~~~~~~l~----~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 111 Y--KLGLVYDSMGEHDKAIEAYEKTIS----IKP--GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp H--HHHHHHHHTTCHHHHHHHHHHHHH----HCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred H--HHHHHHHHhCCchhHHHHHHHHHH----hcc--hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 2 578999999999999988887764 122 12456777888999999999999999998665
No 77
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=96.86 E-value=0.21 Score=44.92 Aligned_cols=94 Identities=10% Similarity=-0.066 Sum_probs=67.4
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHH
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALD 202 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~ 202 (374)
.+|.++...|++++|++.+.+.++. +. ...+.+.....++...+++..+...+.++..... .++ ...
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~----~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~---~~~----~~~ 243 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVEL----RP--DDAQLWNKLGATLANGNRPQEALDAYNRALDINP---GYV----RVM 243 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----CT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCH----HHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh----CC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCH----HHH
Confidence 5788889999999998877766532 11 1135667778888899999999999988866521 122 234
Q ss_pred HHHHHHhhcccccHHHHHHHHHHhccCc
Q psy4083 203 LQSGILHAADEQDFKTAFSYFYEAFEGF 230 (374)
Q Consensus 203 ~~~G~~~~~~~rdy~~A~~~F~eaf~~f 230 (374)
..-|.++. ..++|..|...|-.+.+..
T Consensus 244 ~~l~~~~~-~~g~~~~A~~~~~~a~~~~ 270 (327)
T 3cv0_A 244 YNMAVSYS-NMSQYDLAAKQLVRAIYMQ 270 (327)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HhccHHHHHHHHHHHHHhC
Confidence 45577778 8899999999988886543
No 78
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.84 E-value=0.017 Score=47.82 Aligned_cols=98 Identities=11% Similarity=0.051 Sum_probs=77.5
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhcc------------chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccc
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDD------------KNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANS 190 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd------------~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~ 190 (374)
.+|..++..|+|++|+..+.+.+.-+....+ ......++......+...+++..+...+.++....
T Consensus 16 ~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-- 93 (162)
T 3rkv_A 16 QKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-- 93 (162)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC--
Confidence 4788999999999999999999876554311 34556788999999999999999999999987762
Q ss_pred cCCChhhhHHHHHHHHHHhhcccccHHHHHHHHHHhcc
Q psy4083 191 IYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFE 228 (374)
Q Consensus 191 ~~~~~~~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~ 228 (374)
|.. .......|..+. ..++|..|...|-.+.+
T Consensus 94 ----p~~-~~a~~~~g~~~~-~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 94 ----ETN-EKALFRRAKARI-AAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp ----TTC-HHHHHHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred ----Ccc-hHHHHHHHHHHH-HHhcHHHHHHHHHHHHh
Confidence 221 234455688888 89999999999988865
No 79
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=96.83 E-value=0.068 Score=48.30 Aligned_cols=98 Identities=15% Similarity=0.035 Sum_probs=70.6
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCCh------h
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPP------K 196 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~------~ 196 (374)
.+|.++...|++++|++.+.+.++. +. ...+.+.....++...|++..|..++.++....... .++ .
T Consensus 211 ~l~~~~~~~~~~~~A~~~~~~a~~~----~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~ 283 (327)
T 3cv0_A 211 KLGATLANGNRPQEALDAYNRALDI----NP--GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGG-TTPTGEASRE 283 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----CT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS-CC-----CCT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc----CC--CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc-ccccccchhh
Confidence 5788999999999998888777642 11 123466677889999999999999999987654210 111 1
Q ss_pred hhHHHHHHHHHHhhcccccHHHHHHHHHHhcc
Q psy4083 197 MQAALDLQSGILHAADEQDFKTAFSYFYEAFE 228 (374)
Q Consensus 197 ~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~ 228 (374)
........-|.++. ..+++..|...|-.+.+
T Consensus 284 ~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 284 ATRSMWDFFRMLLN-VMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHHHH-HTTCHHHHHHHTTCCSH
T ss_pred cCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHH
Confidence 14456667788888 89999999888765544
No 80
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=96.77 E-value=0.059 Score=48.13 Aligned_cols=137 Identities=12% Similarity=0.100 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhH--------------------------HHHHHHHHHHHHhhccc
Q psy4083 38 EQNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKA--------------------------KAAKLVRSLVDFFLDLE 91 (374)
Q Consensus 38 e~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~--------------------------~~~k~i~~ild~~~~~~ 91 (374)
..+.+.++..++..|+|++..+.+..+....+.-+.. .+.+..+++++.. |
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p 128 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---P 128 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---T
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---c
Confidence 3567888999999999999999998888765432111 1112233333332 2
Q ss_pred cchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHh
Q psy4083 92 TRTGMEVALCKECIEWAKEERRTFLRQSLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHAL 171 (374)
Q Consensus 92 ~~~~~~~~l~~e~i~~~~~~~r~~lr~~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~ 171 (374)
++... ......+.... ..+-...+ .+|.+|...|+|++|+..+.++++. ..+.....+.++....++...
T Consensus 129 ~~~~~--~~a~~~~~~~~---~~~~~~~~--~la~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~a~~~l~~~~~~~ 198 (261)
T 3qky_A 129 NHELV--DDATQKIRELR---AKLARKQY--EAARLYERRELYEAAAVTYEAVFDA---YPDTPWADDALVGAMRAYIAY 198 (261)
T ss_dssp TCTTH--HHHHHHHHHHH---HHHHHHHH--HHHHHHHHTTCHHHHHHHHHHHHHH---CTTSTTHHHHHHHHHHHHHHH
T ss_pred CchhH--HHHHHHHHHHH---HHHHHHHH--HHHHHHHHccCHHHHHHHHHHHHHH---CCCCchHHHHHHHHHHHHHHh
Confidence 21110 00001111111 01111123 6899999999999999888887742 222334556777777777766
Q ss_pred ----------CCHHHHHHHHHHHHhh
Q psy4083 172 ----------SNLSTSRASLTSARTT 187 (374)
Q Consensus 172 ----------~n~~~a~~~~~~a~~~ 187 (374)
+++.+|...+.++...
T Consensus 199 g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 199 AEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhcccchHHHHHHHHHHHHHH
Confidence 8889999999887654
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=96.66 E-value=0.054 Score=57.36 Aligned_cols=162 Identities=11% Similarity=0.046 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHH
Q psy4083 39 QNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQ 118 (374)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~ 118 (374)
+++..++.++.+.|++++..+.+......-+....+... +-.++-.. +..+.-++.+.++|+-..+. ...
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~n--Lg~~l~~~----g~~~eA~~~~~~Al~l~P~~----~~a 79 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSN--LASVLQQQ----GKLQEALMHYKEAIRISPTF----ADA 79 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHH--HHHHHHHT----TCHHHHHHHHHHHHHHCTTC----HHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHc----CCHHHHHHHHHHHHHhCCCC----HHH
Confidence 567888999999999999999888887776665433221 11122222 22344455555555432211 222
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhh
Q psy4083 119 SLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQ 198 (374)
Q Consensus 119 ~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~ 198 (374)
.. .||.+|.+.|++++|++.+.+.++ .+. .-.+.+.....++...|++.+|...+.+|..+.. .++
T Consensus 80 ~~--nLg~~l~~~g~~~~A~~~~~kAl~----l~P--~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P---~~~--- 145 (723)
T 4gyw_A 80 YS--NMGNTLKEMQDVQGALQCYTRAIQ----INP--AFADAHSNLASIHKDSGNIPEAIASYRTALKLKP---DFP--- 145 (723)
T ss_dssp HH--HHHHHHHHTTCHHHHHHHHHHHHH----HCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS---CCH---
T ss_pred HH--HHHHHHHHcCCHHHHHHHHHHHHH----hCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCh---
Confidence 33 589999999999999998888774 121 1245677778889999999999999999987631 122
Q ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHh
Q psy4083 199 AALDLQSGILHAADEQDFKTAFSYFYEA 226 (374)
Q Consensus 199 ~~i~~~~G~~~~~~~rdy~~A~~~F~ea 226 (374)
.....-|.++. ..++|.+|...|-.+
T Consensus 146 -~a~~~L~~~l~-~~g~~~~A~~~~~ka 171 (723)
T 4gyw_A 146 -DAYCNLAHCLQ-IVCDWTDYDERMKKL 171 (723)
T ss_dssp -HHHHHHHHHHH-HTTCCTTHHHHHHHH
T ss_pred -HHHhhhhhHHH-hcccHHHHHHHHHHH
Confidence 22334456666 778888888777655
No 82
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=96.66 E-value=0.11 Score=42.08 Aligned_cols=130 Identities=9% Similarity=0.049 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHH
Q psy4083 39 QNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQ 118 (374)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~ 118 (374)
..++.++..++..|+|++..+.+....... |.. ...|
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----------------------~~~------------------~~~~--- 50 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN----------------------PSN------------------AIYY--- 50 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----------------------TTC------------------HHHH---
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC----------------------CCC------------------hHHH---
Confidence 456788999999999999876665544321 210 0111
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhh
Q psy4083 119 SLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQ 198 (374)
Q Consensus 119 ~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~ 198 (374)
. .+|.++...|++++|++.+.+.+.. +. ...+.+.....++...+++..+...+.++..... .++..
T Consensus 51 -~--~~a~~~~~~~~~~~A~~~~~~a~~~----~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p---~~~~~- 117 (166)
T 1a17_A 51 -G--NRSLAYLRTECYGYALGDATRAIEL----DK--KYIKGYYRRAASNMALGKFRAALRDYETVVKVKP---HDKDA- 117 (166)
T ss_dssp -H--HHHHHHHHTTCHHHHHHHHHHHHHH----CT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---TCHHH-
T ss_pred -H--HHHHHHHHcCCHHHHHHHHHHHHHh----Cc--ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC---CCHHH-
Confidence 1 3677888899999998887777642 11 1245677778888999999999999998876531 23332
Q ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHh
Q psy4083 199 AALDLQSGILHAADEQDFKTAFSYFYEA 226 (374)
Q Consensus 199 ~~i~~~~G~~~~~~~rdy~~A~~~F~ea 226 (374)
......|..++ ..++|.+|...|-.+
T Consensus 118 -~~~~~~~~~~~-~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 118 -KMKYQECNKIV-KQKAFERAIAGDEHK 143 (166)
T ss_dssp -HHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHH-HHHHHHHHHHcccch
Confidence 22223344456 678899988887655
No 83
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=96.66 E-value=0.094 Score=51.34 Aligned_cols=168 Identities=12% Similarity=0.049 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHH
Q psy4083 35 KAKEQNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRT 114 (374)
Q Consensus 35 k~~e~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~ 114 (374)
...-.+++.++..+...|++++..+.+.......+. +.. ...+-..+.. .+..+.-++.+...++....+...
T Consensus 240 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~-----~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~ 312 (537)
T 3fp2_A 240 ENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNS-----YIFLALTLAD-KENSQEFFKFFQKAVDLNPEYPPT 312 (537)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHH-----HHHHHHHTCC-SSCCHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chH-----HHHHHHHHHH-hcCHHHHHHHHHHHhccCCCCHHH
Confidence 344466888899999999999998888887776554 221 1122222221 122344455665555543322222
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCC
Q psy4083 115 FLRQSLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCP 194 (374)
Q Consensus 115 ~lr~~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~ 194 (374)
.. .+|.+|...|++++|++.+.+.++. +.. ..+.+.....++...|++..+...+..+..... .+
T Consensus 313 ----~~--~l~~~~~~~~~~~~A~~~~~~a~~~----~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~ 377 (537)
T 3fp2_A 313 ----YY--HRGQMYFILQDYKNAKEDFQKAQSL----NPE--NVYPYIQLACLLYKQGKFTESEAFFNETKLKFP---TL 377 (537)
T ss_dssp ----HH--HHHHHHHHTTCHHHHHHHHHHHHHH----CTT--CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TC
T ss_pred ----HH--HHHHHHHhcCCHHHHHHHHHHHHHh----CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CC
Confidence 22 5788999999999998888777641 111 125677778899999999999999999876531 22
Q ss_pred hhhhHHHHHHHHHHhhcccccHHHHHHHHHHhccC
Q psy4083 195 PKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEG 229 (374)
Q Consensus 195 ~~~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~ 229 (374)
+ .....-|.++. ..++|..|...|-.+.+.
T Consensus 378 ~----~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 378 P----EVPTFFAEILT-DRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp T----HHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred h----HHHHHHHHHHH-HhCCHHHHHHHHHHHHHc
Confidence 2 23344588888 899999999999888643
No 84
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=96.63 E-value=0.15 Score=40.71 Aligned_cols=114 Identities=11% Similarity=0.150 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHHHH
Q psy4083 41 ILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQSL 120 (374)
Q Consensus 41 ~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~~l 120 (374)
..++|..+++.|+|++..+.+...... - |+.. ..| .
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~-------------------~---p~~~------------------~~~----~ 46 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIEL-------------------D---PSNI------------------TFY----N 46 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------C---TTCH------------------HHH----H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------C---CCCH------------------HHH----H
Confidence 345699999999999987776543321 1 3210 011 1
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhH
Q psy4083 121 EARLIALYFDTGEYTEALKLSSSLLKELKKL-DDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQA 199 (374)
Q Consensus 121 ~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~-dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~ 199 (374)
.+|.+|...|+|++|++.+.+.+.--... .+.......+...-.++...+++..|..++.+|.... ++|.+..
T Consensus 47 --nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~----~~~~~~~ 120 (127)
T 4gcn_A 47 --NKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF----RDPELVK 120 (127)
T ss_dssp --HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----CCHHHHH
T ss_pred --hHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----cCHHHHH
Confidence 37889999999999999988887543332 2233455677777788899999999999999987653 5777766
Q ss_pred HHHHH
Q psy4083 200 ALDLQ 204 (374)
Q Consensus 200 ~i~~~ 204 (374)
.+.++
T Consensus 121 ~l~~l 125 (127)
T 4gcn_A 121 KVKEL 125 (127)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66554
No 85
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.52 E-value=0.026 Score=44.39 Aligned_cols=93 Identities=12% Similarity=0.137 Sum_probs=72.3
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHH
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALD 202 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~ 202 (374)
.+|..++..|+|++|+..+.+.+.. +.. -.+++.....++...+++..+...+.++.... |.. ....
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~~----~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------p~~-~~~~ 75 (126)
T 3upv_A 9 LEGKEYFTKSDWPNAVKAYTEMIKR----APE--DARGYSNRAAALAKLMSFPEAIADCNKAIEKD------PNF-VRAY 75 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTC-HHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHh----CCC--ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------CCc-HHHH
Confidence 4788899999999999888877642 221 23678888899999999999999999987763 211 2345
Q ss_pred HHHHHHhhcccccHHHHHHHHHHhccC
Q psy4083 203 LQSGILHAADEQDFKTAFSYFYEAFEG 229 (374)
Q Consensus 203 ~~~G~~~~~~~rdy~~A~~~F~eaf~~ 229 (374)
...|.++. ..++|..|...|-.+.+-
T Consensus 76 ~~lg~~~~-~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 76 IRKATAQI-AVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHhCHHHHHHHHHHHHHh
Confidence 56688888 899999999999888653
No 86
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=96.51 E-value=0.26 Score=46.31 Aligned_cols=94 Identities=11% Similarity=0.165 Sum_probs=66.8
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHH
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALD 202 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~ 202 (374)
.++.+|...|++++|++.+.+.+. .+. ...+.+.....++...|++..+...+.++..... .++ ...
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~----~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---~~~----~~~ 308 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIE----LQP--HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP---THA----DSL 308 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH----TCS--SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT---TCH----HHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh----hCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc---ccH----HHH
Confidence 478888999999999887776653 111 1234566777888899999999999988876521 222 223
Q ss_pred HHHHHHhhcccccHHHHHHHHHHhccCc
Q psy4083 203 LQSGILHAADEQDFKTAFSYFYEAFEGF 230 (374)
Q Consensus 203 ~~~G~~~~~~~rdy~~A~~~F~eaf~~f 230 (374)
..-|.++. ..++|.+|...|-.+.+.+
T Consensus 309 ~~l~~~~~-~~g~~~~A~~~~~~al~~~ 335 (388)
T 1w3b_A 309 NNLANIKR-EQGNIEEAVRLYRKALEVF 335 (388)
T ss_dssp HHHHHHHH-TTTCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHhcC
Confidence 34566777 8899999999988887643
No 87
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=96.49 E-value=0.037 Score=48.23 Aligned_cols=96 Identities=17% Similarity=0.112 Sum_probs=75.9
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhh---hHH
Q psy4083 124 LIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKM---QAA 200 (374)
Q Consensus 124 La~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~---~~~ 200 (374)
+|..+...|++++|++.+.+.++ ......+++.....++...+++..+...+.++..... .++.. .+.
T Consensus 48 ~~~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~~~ 118 (228)
T 4i17_A 48 CGVCADNIKKYKEAADYFDIAIK------KNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVP---GNATIEKLYAI 118 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH------TTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---TCHHHHHHHHH
T ss_pred HHHHHHHhhcHHHHHHHHHHHHH------hCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC---CcHHHHHHHHH
Confidence 68889999999999988887763 2223567788888999999999999999999877631 23322 335
Q ss_pred HHHHHHHHhhcccccHHHHHHHHHHhccC
Q psy4083 201 LDLQSGILHAADEQDFKTAFSYFYEAFEG 229 (374)
Q Consensus 201 i~~~~G~~~~~~~rdy~~A~~~F~eaf~~ 229 (374)
.....|.++. ..++|.+|...|-.+.+.
T Consensus 119 ~~~~~g~~~~-~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 119 YYLKEGQKFQ-QAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHTTS
T ss_pred HHHHHhHHHH-HhccHHHHHHHHHHHHhc
Confidence 5677888899 999999999999999764
No 88
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=96.46 E-value=0.19 Score=38.30 Aligned_cols=130 Identities=16% Similarity=0.211 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHHH
Q psy4083 40 NILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQS 119 (374)
Q Consensus 40 ~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~~ 119 (374)
+.+.++..+...|++++..+.+.......+..+.. ...+...... .+..+.-...+.+.++........ .
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~----~ 72 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA-----WYNLGNAYYK-QGDYDEAIEYYQKALELDPRSAEA----W 72 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH-----HHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHH----H
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhH-----HHHHHHHHHH-hcCHHHHHHHHHHHHHHCCCchHH----H
Confidence 45677999999999999988887776554333211 1111111111 111233344444444322211122 2
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy4083 120 LEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTT 187 (374)
Q Consensus 120 l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~ 187 (374)
. .++.++...|++++|++.+...+.. ... ..+.+.....++...+++..+...+..+...
T Consensus 73 ~--~l~~~~~~~~~~~~A~~~~~~~~~~----~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 73 Y--NLGNAYYKQGDYDEAIEYYQKALEL----DPR--SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp H--HHHHHHHTTTCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHhcCHHHHHHHHHHHHHh----CCC--ChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 2 4788999999999998887766532 111 1345666788889999999999999887654
No 89
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=96.46 E-value=0.032 Score=41.83 Aligned_cols=97 Identities=13% Similarity=-0.002 Sum_probs=72.6
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHH
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALD 202 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~ 202 (374)
.+|..+...|++++|+..+.+.+.. +.. ..+.+.....++...+++..+...+.++.... ++ .......
T Consensus 11 ~~~~~~~~~~~~~~A~~~~~~a~~~----~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----~~-~~~~~~~ 79 (112)
T 2kck_A 11 LEGVLQYDAGNYTESIDLFEKAIQL----DPE--ESKYWLMKGKALYNLERYEEAVDCYNYVINVI----ED-EYNKDVW 79 (112)
T ss_dssp GHHHHHHSSCCHHHHHHHHHHHHHH----CCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS----CC-TTCHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHh----CcC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----cc-cchHHHH
Confidence 4788899999999998888777642 211 13566777888999999999999999987653 11 1123455
Q ss_pred HHHHHHhhccc-ccHHHHHHHHHHhccCcC
Q psy4083 203 LQSGILHAADE-QDFKTAFSYFYEAFEGFS 231 (374)
Q Consensus 203 ~~~G~~~~~~~-rdy~~A~~~F~eaf~~f~ 231 (374)
...|.++. .. ++|.+|..+|-.+.....
T Consensus 80 ~~l~~~~~-~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 80 AAKADALR-YIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHHHHT-TCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHH-HHhCCHHHHHHHHHHHhhccc
Confidence 66788888 89 999999999988866543
No 90
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=96.38 E-value=0.032 Score=46.13 Aligned_cols=90 Identities=14% Similarity=0.163 Sum_probs=68.2
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHH
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALD 202 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~ 202 (374)
.+|.+|++.|+|++|++.+.+.++ .+.. -.+.+..-..++...+++..+...+.++..+.. .++. ..
T Consensus 36 ~la~~y~~~~~~~~A~~~~~~al~----~~p~--~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p---~~~~----~~ 102 (150)
T 4ga2_A 36 YFAKLYYEAKEYDLAKKYICTYIN----VQER--DPKAHRFLGLLYELEENTDKAVECYRRSVELNP---TQKD----LV 102 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH----HCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHH----HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH----hCCC--CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC---CCHH----HH
Confidence 489999999999999988887764 2221 246777788899999999999999999877631 1222 33
Q ss_pred HHHHHHhhcccccHHHHHHHHHHh
Q psy4083 203 LQSGILHAADEQDFKTAFSYFYEA 226 (374)
Q Consensus 203 ~~~G~~~~~~~rdy~~A~~~F~ea 226 (374)
..-|.++. ..++|.+|+..|++-
T Consensus 103 ~~la~~~~-~~~~~~~aa~~~~~~ 125 (150)
T 4ga2_A 103 LKIAELLC-KNDVTDGRAKYWVER 125 (150)
T ss_dssp HHHHHHHH-HHCSSSSHHHHHHHH
T ss_pred HHHHHHHH-HcCChHHHHHHHHHH
Confidence 44567777 889999999998763
No 91
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=96.38 E-value=0.2 Score=43.42 Aligned_cols=113 Identities=12% Similarity=0.059 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHH
Q psy4083 39 QNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQ 118 (374)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~ 118 (374)
+.++..+..+++.|+|++..+.+......-|.-+..... . .. .... .+ ..
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~---~----~~---~~~~------------------~~--~~ 54 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYW---T----NV---DKNS------------------EI--SS 54 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHH---H----HS---CTTS------------------HH--HH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHH---h----hh---cchh------------------hh--hH
Confidence 345677888999999999877777766554443222111 0 01 0000 00 01
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy4083 119 SLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTT 187 (374)
Q Consensus 119 ~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~ 187 (374)
.+...+|.+|...|++++|+..+.+.++ .+.. -.+.+.....++...|++..+...+.++...
T Consensus 55 ~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 55 KLATELALAYKKNRNYDKAYLFYKELLQ----KAPN--NVDCLEACAEMQVCRGQEKDALRMYEKILQL 117 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH----HCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 1112488899999999999888877764 1211 2466777788899999999999999998766
No 92
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.38 E-value=0.045 Score=45.32 Aligned_cols=94 Identities=18% Similarity=0.128 Sum_probs=73.2
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHH
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALD 202 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~ 202 (374)
.+|..++..|+|++|++.+.+.+.. +.. ..+++.....++...+++..+...+.++..+. |.. ....
T Consensus 16 ~~g~~~~~~g~~~~A~~~~~~al~~----~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------p~~-~~~~ 82 (164)
T 3sz7_A 16 SEGNAAMARKEYSKAIDLYTQALSI----APA--NPIYLSNRAAAYSASGQHEKAAEDAELATVVD------PKY-SKAW 82 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----STT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTC-HHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh----CCc--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------CCC-HHHH
Confidence 4788999999999999888877642 211 24677888899999999999999999987763 211 3445
Q ss_pred HHHHHHhhcccccHHHHHHHHHHhccCc
Q psy4083 203 LQSGILHAADEQDFKTAFSYFYEAFEGF 230 (374)
Q Consensus 203 ~~~G~~~~~~~rdy~~A~~~F~eaf~~f 230 (374)
...|.++. ..++|..|...|-.+.+-.
T Consensus 83 ~~lg~~~~-~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 83 SRLGLARF-DMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HccCHHHHHHHHHHHHHhC
Confidence 56688888 8999999999999886543
No 93
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=96.37 E-value=0.0086 Score=44.28 Aligned_cols=58 Identities=12% Similarity=0.229 Sum_probs=51.7
Q ss_pred HHHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEEecC
Q psy4083 285 QNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFEG 342 (374)
Q Consensus 285 ~~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~~~~ 342 (374)
..+..+++.=+.|.|+.||..||++.+++-+.+-+|..+|+|.|.||-..+.|.+.+.
T Consensus 10 ~~Fi~yIk~~Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs~e 67 (72)
T 1wi9_A 10 TEFINYIKKSKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITPS 67 (72)
T ss_dssp HHHHHHHHHCSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECCCS
T ss_pred HHHHHHHHHcCeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEecHH
Confidence 3456788888999999999999999999999999999999999999998888877543
No 94
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=96.35 E-value=0.036 Score=43.80 Aligned_cols=92 Identities=11% Similarity=0.089 Sum_probs=71.6
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHH
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALD 202 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~ 202 (374)
.+|..++..|+|++|+..+...+.. +.. ..+++.....++...+++..+...+.++.... |. .....
T Consensus 14 ~~g~~~~~~~~~~~A~~~~~~al~~----~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------p~-~~~~~ 80 (137)
T 3q49_B 14 EQGNRLFVGRKYPEAAACYGRAITR----NPL--VAVYYTNRALCYLKMQQPEQALADCRRALELD------GQ-SVKAH 80 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TT-CHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHhh----CcC--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------ch-hHHHH
Confidence 5788999999999999888877642 211 24677888899999999999999999987653 11 12345
Q ss_pred HHHHHHhhcccccHHHHHHHHHHhcc
Q psy4083 203 LQSGILHAADEQDFKTAFSYFYEAFE 228 (374)
Q Consensus 203 ~~~G~~~~~~~rdy~~A~~~F~eaf~ 228 (374)
...|.++. ..++|..|...|-.+.+
T Consensus 81 ~~l~~~~~-~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 81 FFLGQCQL-EMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHhhHHHHHHHHHHHHH
Confidence 56788888 89999999999988864
No 95
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=96.26 E-value=0.084 Score=45.07 Aligned_cols=105 Identities=14% Similarity=0.037 Sum_probs=76.6
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccC---------C
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIY---------C 193 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~---------~ 193 (374)
.+|..|...|++++|++.+.+.+.. +. ...+.+.....++...+++..+...+.++........ .
T Consensus 42 ~lg~~~~~~g~~~~A~~~~~~al~~----~~--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 115 (213)
T 1hh8_A 42 NIGCMYTILKNMTEAEKAFTRSINR----DK--HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQ 115 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----CT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh----Cc--cchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccc
Confidence 4788899999999999888777642 21 2246677888899999999999999999876532110 0
Q ss_pred ChhhhHHHHHHHHHHhhcccccHHHHHHHHHHhccCcCccc
Q psy4083 194 PPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEGFSTVD 234 (374)
Q Consensus 194 ~~~~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~f~~~~ 234 (374)
...........-|.++. ..++|..|...|-.+.+......
T Consensus 116 ~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 116 FKLFACEVLYNIAFMYA-KKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp CEEEHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCSGG
T ss_pred cCccchHHHHHHHHHHH-HccCHHHHHHHHHHHHHcCcccc
Confidence 01112355667788888 99999999999999977655433
No 96
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=96.24 E-value=0.031 Score=43.41 Aligned_cols=93 Identities=13% Similarity=0.123 Sum_probs=71.3
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHH
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALD 202 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~ 202 (374)
.+|..+...|++++|++.+.+.+. .+.. -.+++.....++...+++..+..++.++..... .+ ....
T Consensus 21 ~~~~~~~~~~~~~~A~~~~~~al~----~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~---~~----~~~~ 87 (133)
T 2lni_A 21 NKGNECFQKGDYPQAMKHYTEAIK----RNPK--DAKLYSNRAACYTKLLEFQLALKDCEECIQLEP---TF----IKGY 87 (133)
T ss_dssp HHHHHHHHTTCSHHHHHHHHHHHT----TCTT--CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT---TC----HHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH----cCCC--cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC---Cc----hHHH
Confidence 578899999999999888877663 1111 256777888889999999999999999876521 12 2345
Q ss_pred HHHHHHhhcccccHHHHHHHHHHhccC
Q psy4083 203 LQSGILHAADEQDFKTAFSYFYEAFEG 229 (374)
Q Consensus 203 ~~~G~~~~~~~rdy~~A~~~F~eaf~~ 229 (374)
...|.++. ..++|..|...|-.+.+.
T Consensus 88 ~~la~~~~-~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 88 TRKAAALE-AMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHhhHHHHHHHHHHHHHh
Confidence 56678888 899999999999888653
No 97
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=96.24 E-value=0.28 Score=46.07 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhh
Q psy4083 41 ILQLGEKYKQEGKAIELAELIKKTRPFL 68 (374)
Q Consensus 41 ~~~l~~~~~~~~~~~~l~~~l~~l~~~~ 68 (374)
...++..+...|++++..+.+.......
T Consensus 70 ~~~lg~~~~~~g~~~~A~~~~~~al~~~ 97 (388)
T 1w3b_A 70 YSNLGNVYKERGQLQEAIEHYRHALRLK 97 (388)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 4555666666666666666655554443
No 98
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=96.23 E-value=0.45 Score=41.69 Aligned_cols=190 Identities=8% Similarity=-0.076 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHH
Q psy4083 39 QNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQ 118 (374)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~ 118 (374)
.+.+.++..++..|++++..+.+.......+..+..... +-.+.-.. +..+.-+..+...++....+. ..
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~--la~~~~~~----~~~~~A~~~~~~al~~~~~~~----~~ 113 (275)
T 1xnf_A 44 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNY--LGIYLTQA----GNFDAAYEAFDSVLELDPTYN----YA 113 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHH--HHHHHHHT----TCHHHHHHHHHHHHHHCTTCT----HH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHH--HHHHHHHc----cCHHHHHHHHHHHHhcCcccc----HH
Confidence 456778999999999999998888887766554332211 11111111 223444555555554332221 22
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhh
Q psy4083 119 SLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQ 198 (374)
Q Consensus 119 ~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~ 198 (374)
.. .+|.+|...|++++|++.+.+.++ .+..... ......++...+++..+...+..+..... .++..
T Consensus 114 ~~--~la~~~~~~g~~~~A~~~~~~a~~----~~~~~~~---~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~- 180 (275)
T 1xnf_A 114 HL--NRGIALYYGGRDKLAQDDLLAFYQ----DDPNDPF---RSLWLYLAEQKLDEKQAKEVLKQHFEKSD---KEQWG- 180 (275)
T ss_dssp HH--HHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHH---HHHHHHHHHHHHCHHHHHHHHHHHHHHSC---CCSTH-
T ss_pred HH--HHHHHHHHhccHHHHHHHHHHHHH----hCCCChH---HHHHHHHHHHhcCHHHHHHHHHHHHhcCC---cchHH-
Confidence 22 578899999999999888877764 2221111 11122344667899999888877654421 11111
Q ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHhccCcCcccchhHHHHHHHHHHHHHhcCCchh
Q psy4083 199 AALDLQSGILHAADEQDFKTAFSYFYEAFEGFSTVDHNHAMMSLKYMLLSKIMLNTPED 257 (374)
Q Consensus 199 ~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~f~~~~~~~~~~~LkY~vL~~iL~~~~~~ 257 (374)
. ..+.+++ ..+++..|...|-.+++.... ..+....+...++.+-.-.+...+
T Consensus 181 ---~-~~~~~~~-~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~ 233 (275)
T 1xnf_A 181 ---W-NIVEFYL-GNISEQTLMERLKADATDNTS-LAEHLSETNFYLGKYYLSLGDLDS 233 (275)
T ss_dssp ---H-HHHHHHT-TSSCHHHHHHHHHHHCCSHHH-HHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ---H-HHHHHHH-HhcCHHHHHHHHHHHhccccc-ccccccHHHHHHHHHHHHcCCHHH
Confidence 1 2333445 566777777777777553321 112334455555666566555543
No 99
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.18 E-value=0.06 Score=42.69 Aligned_cols=97 Identities=9% Similarity=-0.046 Sum_probs=73.5
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHH
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALD 202 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~ 202 (374)
.+|..++..|+|++|++.+.+.+. ...+......++.....++...+++.++...+.++..... .+ ....
T Consensus 33 ~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~----~~~~ 102 (148)
T 2dba_A 33 KEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG---GD----VKAL 102 (148)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS---CC----HHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc---cC----HHHH
Confidence 478889999999999888877763 1112223467888888999999999999999999876521 12 3444
Q ss_pred HHHHHHhhcccccHHHHHHHHHHhccCc
Q psy4083 203 LQSGILHAADEQDFKTAFSYFYEAFEGF 230 (374)
Q Consensus 203 ~~~G~~~~~~~rdy~~A~~~F~eaf~~f 230 (374)
...|.++. ..++|..|...|-.+.+..
T Consensus 103 ~~~a~~~~-~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 103 YRRSQALE-KLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHH-HHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcC
Confidence 56678888 8999999999999886643
No 100
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=96.17 E-value=0.29 Score=37.31 Aligned_cols=115 Identities=11% Similarity=0.139 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHH
Q psy4083 39 QNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQ 118 (374)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~ 118 (374)
...+.++..++..|+|+...+.+....... |... ..|
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----------------------~~~~------------------~~~--- 41 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD----------------------PTNM------------------TYI--- 41 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------TTCH------------------HHH---
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC----------------------CccH------------------HHH---
Confidence 345677899999999998866665444321 2100 011
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhh
Q psy4083 119 SLEARLIALYFDTGEYTEALKLSSSLLKELKKL-DDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKM 197 (374)
Q Consensus 119 ~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~-dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~ 197 (374)
. .+|.+|...|++++|+..+.+.+...... .+......++.....++...+++..+...+.++.... +++..
T Consensus 42 -~--~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----~~~~~ 114 (131)
T 1elr_A 42 -T--NQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH----RTPDV 114 (131)
T ss_dssp -H--HHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CCHHH
T ss_pred -H--HHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----CCHHH
Confidence 1 47888899999999999888887644332 2233447788888999999999999999999987763 34554
Q ss_pred hHHHHH
Q psy4083 198 QAALDL 203 (374)
Q Consensus 198 ~~~i~~ 203 (374)
...+..
T Consensus 115 ~~~l~~ 120 (131)
T 1elr_A 115 LKKCQQ 120 (131)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 101
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.16 E-value=0.078 Score=39.87 Aligned_cols=94 Identities=12% Similarity=-0.036 Sum_probs=71.2
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHH
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALD 202 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~ 202 (374)
.+|..+...|++++|+..+.+.+.. +.. -.+++.....++...+++..+...+.++..... .+ ....
T Consensus 9 ~~~~~~~~~~~~~~A~~~~~~~~~~----~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~----~~~~ 75 (118)
T 1elw_A 9 EKGNKALSVGNIDDALQCYSEAIKL----DPH--NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP---DW----GKGY 75 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TC----HHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHH----CCC--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc---cc----HHHH
Confidence 5788899999999998888777642 211 245677778889999999999999998876521 12 2344
Q ss_pred HHHHHHhhcccccHHHHHHHHHHhccCc
Q psy4083 203 LQSGILHAADEQDFKTAFSYFYEAFEGF 230 (374)
Q Consensus 203 ~~~G~~~~~~~rdy~~A~~~F~eaf~~f 230 (374)
..-|.++. ..++|..|...|-.+.+..
T Consensus 76 ~~~a~~~~-~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 76 SRKAAALE-FLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHH-HHhhHHHHHHHHHHHHHcC
Confidence 56677788 8999999999998887643
No 102
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=96.13 E-value=0.77 Score=44.23 Aligned_cols=98 Identities=14% Similarity=0.085 Sum_probs=69.0
Q ss_pred HHHHHHh---ccCHHHHHHHHHHHHHHHHHh-----cc---chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccC
Q psy4083 124 LIALYFD---TGEYTEALKLSSSLLKELKKL-----DD---KNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIY 192 (374)
Q Consensus 124 La~~~~~---~g~~~~Al~~~~~ll~el~~~-----dd---~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~ 192 (374)
++..++. .|++++|++.+.+++...... ++ .....+.+.....++...|++..+..++..+....
T Consensus 192 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---- 267 (514)
T 2gw1_A 192 NGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF---- 267 (514)
T ss_dssp HHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC----
Confidence 4444554 799999999988887643221 11 24557788888889999999999999998876652
Q ss_pred CChhhhHHHHHHHHHHhhcccccHHHHHHHHHHhccCc
Q psy4083 193 CPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEGF 230 (374)
Q Consensus 193 ~~~~~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~f 230 (374)
|. .......|.++. ..++|..|...|-.+.+..
T Consensus 268 --~~--~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~ 300 (514)
T 2gw1_A 268 --PR--VNSYIYMALIMA-DRNDSTEYYNYFDKALKLD 300 (514)
T ss_dssp --CC--HHHHHHHHHHHH-TSSCCTTGGGHHHHHHTTC
T ss_pred --cc--HHHHHHHHHHHH-HCCCHHHHHHHHHHHhhcC
Confidence 22 445555677777 7788888888777776543
No 103
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=96.12 E-value=0.32 Score=39.46 Aligned_cols=132 Identities=16% Similarity=0.110 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHH
Q psy4083 39 QNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQ 118 (374)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~ 118 (374)
.+.+.++..+...|++++..+.+.......+..+... ..+-..... .+..+.-++.+.+.++....+.. .
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-----~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~----~ 112 (186)
T 3as5_A 43 DVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVA-----TVLGLTYVQ-VQKYDLAVPLLIKVAEANPINFN----V 112 (186)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-----HHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHH----H
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH-----HHHHHHHHH-hcCHHHHHHHHHHHHhcCcHhHH----H
Confidence 3466779999999999999888888776654432221 111111111 12223334444444443221212 2
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q psy4083 119 SLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTA 188 (374)
Q Consensus 119 ~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~ 188 (374)
.. .+|.++...|++++|++.+.+.+.. ... ..+.+.....++...|++..+..++..+....
T Consensus 113 ~~--~~a~~~~~~~~~~~A~~~~~~~~~~----~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 113 RF--RLGVALDNLGRFDEAIDSFKIALGL----RPN--EGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp HH--HHHHHHHHTTCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHcCcHHHHHHHHHHHHhc----Ccc--chHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 22 5788999999999998888777642 111 14677778889999999999999999886653
No 104
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=96.03 E-value=0.024 Score=50.29 Aligned_cols=95 Identities=14% Similarity=0.133 Sum_probs=57.5
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHH
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALD 202 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~ 202 (374)
.+|..++..|++++|++.+.++++ .+.. ..+.+.....++...+++..+..++.++...+ .+|...+...
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~----~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~ 77 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEA----KKYN--SPYIYNRRAVCYYELAKYDLAQKDIETYFSKV----NATKAKSADF 77 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHH----TTCC--CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS----CTTTCCHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHH----hCCC--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc----CchhHHHHHH
Confidence 456677777777777666665552 1111 11234444556677777777777777665522 3455555556
Q ss_pred HHHHHHhhcccccHHHHHHHHHHhcc
Q psy4083 203 LQSGILHAADEQDFKTAFSYFYEAFE 228 (374)
Q Consensus 203 ~~~G~~~~~~~rdy~~A~~~F~eaf~ 228 (374)
..-|.++. ..++|..|...|-.+.+
T Consensus 78 ~~lg~~~~-~~~~~~~A~~~~~~a~~ 102 (272)
T 3u4t_A 78 EYYGKILM-KKGQDSLAIQQYQAAVD 102 (272)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HcccHHHHHHHHHHHHh
Confidence 66666666 67777777777766654
No 105
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=95.96 E-value=0.084 Score=40.42 Aligned_cols=93 Identities=11% Similarity=0.070 Sum_probs=71.4
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHH
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALD 202 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~ 202 (374)
.+|..+...|++++|++.+.+.+.. +.. ..+.+.....++...+++..+...+.++..... .+ ....
T Consensus 17 ~~~~~~~~~~~~~~A~~~~~~~~~~----~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~----~~~~ 83 (131)
T 2vyi_A 17 TEGNEQMKVENFEAAVHFYGKAIEL----NPA--NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP---AY----SKAY 83 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TC----HHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHc----CCC--CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc---cC----HHHH
Confidence 4788899999999998888777642 111 145677788889999999999999999876521 12 2345
Q ss_pred HHHHHHhhcccccHHHHHHHHHHhccC
Q psy4083 203 LQSGILHAADEQDFKTAFSYFYEAFEG 229 (374)
Q Consensus 203 ~~~G~~~~~~~rdy~~A~~~F~eaf~~ 229 (374)
...|.++. ..++|..|...|-.+.+.
T Consensus 84 ~~~~~~~~-~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 84 GRMGLALS-SLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HhCCHHHHHHHHHHHHhc
Confidence 66788888 899999999999988664
No 106
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=95.93 E-value=0.3 Score=40.08 Aligned_cols=132 Identities=14% Similarity=0.101 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHHH
Q psy4083 40 NILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQS 119 (374)
Q Consensus 40 ~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~~ 119 (374)
.+...+..+++.|+|++..+.+......++..+. ...|. +...... ........
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~--------------~~~~~--~~~~~~~----------~~~~~~~~ 66 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLIL--------------REKPG--EPEWVEL----------DRKNIPLY 66 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH--------------TSCTT--SHHHHHH----------HHTHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc--------------cCCCC--HHHHHHH----------HHHHHHHH
Confidence 3556699999999999998877766655443311 01122 1111100 11112222
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCCh-hhh
Q psy4083 120 LEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPP-KMQ 198 (374)
Q Consensus 120 l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~-~~~ 198 (374)
. .+|..|...|+|++|+..+..++.- ++ .-...++....++...|++..|...+.++..... .++ .++
T Consensus 67 ~--nla~~~~~~~~~~~A~~~~~~al~~-----~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p---~~~~~~~ 135 (162)
T 3rkv_A 67 A--NMSQCYLNIGDLHEAEETSSEVLKR-----EE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP---AAASVVA 135 (162)
T ss_dssp H--HHHHHHHHHTCHHHHHHHHHHHHHH-----ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG---GGHHHHH
T ss_pred H--HHHHHHHhcCcHHHHHHHHHHHHhc-----CC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC---CCHHHHH
Confidence 2 4788899999999999888877742 22 2245778888999999999999999999987731 234 445
Q ss_pred HHHHHHHHHH
Q psy4083 199 AALDLQSGIL 208 (374)
Q Consensus 199 ~~i~~~~G~~ 208 (374)
..+..+...+
T Consensus 136 ~~l~~~~~~~ 145 (162)
T 3rkv_A 136 REMKIVTERR 145 (162)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5554444443
No 107
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=95.77 E-value=0.021 Score=47.28 Aligned_cols=92 Identities=9% Similarity=0.008 Sum_probs=65.4
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHH
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALD 202 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~ 202 (374)
+||.++...|++++|+..+...+. .....-..++...++|+..+++.+|..++.++..+.. .+ ....
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~------~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p---~~----~~a~ 68 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTP------SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE---RD----PKAH 68 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSC------SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TC----HHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcc------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CC----HHHH
Confidence 578899999999999877665542 2222333456678899999999999999999877631 12 2345
Q ss_pred HHHHHHhhcccccHHHHHHHHHHhcc
Q psy4083 203 LQSGILHAADEQDFKTAFSYFYEAFE 228 (374)
Q Consensus 203 ~~~G~~~~~~~rdy~~A~~~F~eaf~ 228 (374)
..-|.++. ..++|..|...|-.+.+
T Consensus 69 ~~lg~~~~-~~~~~~~A~~~~~~al~ 93 (150)
T 4ga2_A 69 RFLGLLYE-LEENTDKAVECYRRSVE 93 (150)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HcCchHHHHHHHHHHHH
Confidence 56688888 89999999999998865
No 108
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=95.77 E-value=0.48 Score=47.74 Aligned_cols=129 Identities=14% Similarity=0.154 Sum_probs=91.1
Q ss_pred hhhHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHH
Q psy4083 95 GMEVALCKECIEWAK---EERRTFLRQSLEARLIALYFDTGEYTEALKLSSSLLKELKKLD--DKNLLVEVLLLESKTYH 169 (374)
Q Consensus 95 ~~~~~l~~e~i~~~~---~~~r~~lr~~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~d--d~~~~lev~l~ei~l~~ 169 (374)
+.-..++.++++... ..+..++-..++ .||.+|...|+|++|+.++.+.+.-..+.- +-......+..-..+|.
T Consensus 326 ~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~-nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~ 404 (490)
T 3n71_A 326 HEVVKLCRECLEKQEPVFADTNLYVLRLLS-IASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNW 404 (490)
T ss_dssp HHHHHHHHHHHHHHTTTBCTTSHHHHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHH-HHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 334555555555332 112334433332 689999999999999999999987766652 33455667778889999
Q ss_pred HhCCHHHHHHHHHHHHhhccccC--CChhhhHHHHHHHHHHhhcccccHHHHHHHHHHh
Q psy4083 170 ALSNLSTSRASLTSARTTANSIY--CPPKMQAALDLQSGILHAADEQDFKTAFSYFYEA 226 (374)
Q Consensus 170 ~~~n~~~a~~~~~~a~~~~~~~~--~~~~~~~~i~~~~G~~~~~~~rdy~~A~~~F~ea 226 (374)
.+|++..|..++.+|..+....+ .||.+.. +...-+..++ ..+.|+.|-..|..+
T Consensus 405 ~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~-~~~~l~~~~~-e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 405 HAGHIEVGHGMICKAYAILLVTHGPSHPITKD-LEAMRMQTEM-ELRMFRQNEFMYHKM 461 (490)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH-HHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHHhCCCChHHHH-HHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 99999999999999987664443 4676654 4466666677 788888888888776
No 109
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=95.77 E-value=0.37 Score=44.43 Aligned_cols=24 Identities=8% Similarity=0.051 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHH
Q psy4083 40 NILQLGEKYKQEGKAIELAELIKK 63 (374)
Q Consensus 40 ~~~~l~~~~~~~~~~~~l~~~l~~ 63 (374)
+.+.++.++...|++++..+.+..
T Consensus 103 ~~~~la~~~~~~g~~~~Al~~l~~ 126 (291)
T 3mkr_A 103 FLLMAASIYFYDQNPDAALRTLHQ 126 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHhC
Confidence 456668888888888887666554
No 110
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=95.75 E-value=0.082 Score=45.16 Aligned_cols=99 Identities=13% Similarity=0.065 Sum_probs=74.4
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhc----------cchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccC
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLD----------DKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIY 192 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~d----------d~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~ 192 (374)
.+|..++..|+|++|++.+.+.+.-..... .......++.....++...+++..+..++.++....
T Consensus 43 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---- 118 (198)
T 2fbn_A 43 EEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID---- 118 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----
Confidence 578899999999999998888875222111 112235788888999999999999999999987763
Q ss_pred CChhhhHHHHHHHHHHhhcccccHHHHHHHHHHhccC
Q psy4083 193 CPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEG 229 (374)
Q Consensus 193 ~~~~~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~ 229 (374)
|.. .......|.++. ..++|..|...|-.+.+.
T Consensus 119 --p~~-~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 119 --KNN-VKALYKLGVANM-YFGFLEEAKENLYKAASL 151 (198)
T ss_dssp --TTC-HHHHHHHHHHHH-HHTCHHHHHHHHHHHHHH
T ss_pred --ccc-HHHHHHHHHHHH-HcccHHHHHHHHHHHHHH
Confidence 211 234556688888 899999999999888654
No 111
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=95.72 E-value=0.12 Score=51.30 Aligned_cols=167 Identities=12% Similarity=0.073 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHhCCH-HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHH
Q psy4083 39 QNILQLGEKYKQEGKA-IELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLR 117 (374)
Q Consensus 39 ~~~~~l~~~~~~~~~~-~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr 117 (374)
.+.+.++..+...|+| ++..+.+......-+..+.+... +-.+.-.. +..+.-++.+..+++... . -.
T Consensus 103 ~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~--lg~~~~~~----g~~~~A~~~~~~al~~~p---~--~~ 171 (474)
T 4abn_A 103 QALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQ--LGEVYWKK----GDVTSAHTCFSGALTHCK---N--KV 171 (474)
T ss_dssp HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHH--HHHHHHHH----TCHHHHHHHHHHHHTTCC---C--HH
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHH--HHHHHHHc----CCHHHHHHHHHHHHhhCC---C--HH
Confidence 3567778889999999 98888887777665554322111 11111111 112333344434333211 1 12
Q ss_pred HHHHHHHHHHHHhc---------cCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHh--------CCHHHHHHH
Q psy4083 118 QSLEARLIALYFDT---------GEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHAL--------SNLSTSRAS 180 (374)
Q Consensus 118 ~~l~~kLa~~~~~~---------g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~--------~n~~~a~~~ 180 (374)
... .+|.+|... |++++|++.+.+.++- +... .+.+.....++... +++..|..+
T Consensus 172 ~~~--~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----~p~~--~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~ 243 (474)
T 4abn_A 172 SLQ--NLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM----DVLD--GRSWYILGNAYLSLYFNTGQNPKISQQALSA 243 (474)
T ss_dssp HHH--HHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH----CTTC--HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHH--HHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh----CCCC--HHHHHHHHHHHHHHHHhhccccchHHHHHHH
Confidence 222 588899999 9999998888777642 2211 23455556666666 889999999
Q ss_pred HHHHHhhccccCCChhhhHHHHHHHHHHhhcccccHHHHHHHHHHhccC
Q psy4083 181 LTSARTTANSIYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEG 229 (374)
Q Consensus 181 ~~~a~~~~~~~~~~~~~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~ 229 (374)
+.+|.... +...-.......-|.++. ..++|..|...|-.+.+-
T Consensus 244 ~~~al~~~----p~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 244 YAQAEKVD----RKASSNPDLHLNRATLHK-YEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHC----GGGGGCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhC----CCcccCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Confidence 99987762 101123455667788888 899999999999988653
No 112
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=95.72 E-value=0.078 Score=50.44 Aligned_cols=99 Identities=18% Similarity=0.198 Sum_probs=75.3
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCC--h-hh
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDK--NLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCP--P-KM 197 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~--~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~--~-~~ 197 (374)
-+|.++...|++++|++.+.+.+ +.. ...+|.++..++++...++...|+..+....... ++ | +-
T Consensus 105 ~la~i~~~~g~~eeAL~~l~~~i------~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~----~d~~~~~d 174 (310)
T 3mv2_B 105 LLATAQAILGDLDKSLETCVEGI------DNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAI----EDTVSGDN 174 (310)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH------TSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----CHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHh------ccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----ccccccch
Confidence 37889999999999988776654 322 4789999999999999999999999998876542 21 1 22
Q ss_pred hHHHHHHHHHHhhcccc--cHHHHHHHHHHhccCcCc
Q psy4083 198 QAALDLQSGILHAADEQ--DFKTAFSYFYEAFEGFST 232 (374)
Q Consensus 198 ~~~i~~~~G~~~~~~~r--dy~~A~~~F~eaf~~f~~ 232 (374)
...+....|.+.+ ..+ +|..|+..|=|....|..
T Consensus 175 ~~l~~Laea~v~l-~~g~~~~q~A~~~f~El~~~~p~ 210 (310)
T 3mv2_B 175 EMILNLAESYIKF-ATNKETATSNFYYYEELSQTFPT 210 (310)
T ss_dssp HHHHHHHHHHHHH-HHTCSTTTHHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHHHH-HhCCccHHHHHHHHHHHHHhCCC
Confidence 2345666676666 555 999999999888777753
No 113
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=95.69 E-value=0.28 Score=49.49 Aligned_cols=106 Identities=14% Similarity=0.170 Sum_probs=81.0
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccC--CChhhhH
Q psy4083 124 LIALYFDTGEYTEALKLSSSLLKELKKL--DDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIY--CPPKMQA 199 (374)
Q Consensus 124 La~~~~~~g~~~~Al~~~~~ll~el~~~--dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~--~~~~~~~ 199 (374)
.+.-+...|+|++|+.++.+.|.-..+. .+....+..+-.-..+|..+|+|..|..++.++..+....+ .||.+-.
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 394 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM 394 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 4445668899999999999998766554 23456778888889999999999999999999877654443 4677655
Q ss_pred HHHHHHHHHhhcccccHHHHHHHHHHhccCcC
Q psy4083 200 ALDLQSGILHAADEQDFKTAFSYFYEAFEGFS 231 (374)
Q Consensus 200 ~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~f~ 231 (374)
.+.-+ |.++. ..|+|.+|...|-.|++.+.
T Consensus 395 ~l~nL-a~~~~-~~G~~~eA~~~~~~Al~i~~ 424 (490)
T 3n71_A 395 AVMRA-GLTNW-HAGHIEVGHGMICKAYAILL 424 (490)
T ss_dssp HHHHH-HHHHH-HTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHH-HCCCHHHHHHHHHHHHHHHH
Confidence 55544 45567 78999999999998866543
No 114
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=95.68 E-value=0.55 Score=44.17 Aligned_cols=140 Identities=16% Similarity=0.100 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHH
Q psy4083 39 QNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQ 118 (374)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~ 118 (374)
.+...++..+++.|+|++..+.+.......+..+. + .. +.... ........
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------------~---~~--~~~~~-----------~~~~~~~~ 198 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS-------------F---SN--EEAQK-----------AQALRLAS 198 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC-------------C---CS--HHHHH-----------HHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcccc-------------C---Ch--HHHHH-----------HHHHHHHH
Confidence 56778899999999999998877766655544321 0 11 11000 01122223
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhh
Q psy4083 119 SLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQ 198 (374)
Q Consensus 119 ~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~ 198 (374)
.. .+|..|...|+|++|+..+.+++.- +.. ....+.....++...+++..|...+.+|..... .++
T Consensus 199 ~~--nla~~~~~~g~~~~A~~~~~~al~~----~p~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P---~~~--- 264 (336)
T 1p5q_A 199 HL--NLAMCHLKLQAFSAAIESCNKALEL----DSN--NEKGLSRRGEAHLAVNDFELARADFQKVLQLYP---NNK--- 264 (336)
T ss_dssp HH--HHHHHHHHTTCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS---SCH---
T ss_pred HH--HHHHHHHHcCCHHHHHHHHHHHHHh----CCC--cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC---CCH---
Confidence 33 5899999999999999988888742 221 245677888999999999999999999987631 122
Q ss_pred HHHHHHHHHHhhcccccHHHHHHHH
Q psy4083 199 AALDLQSGILHAADEQDFKTAFSYF 223 (374)
Q Consensus 199 ~~i~~~~G~~~~~~~rdy~~A~~~F 223 (374)
.....-|.++. ..+++..|....
T Consensus 265 -~a~~~l~~~~~-~~~~~~~a~~~~ 287 (336)
T 1p5q_A 265 -AAKTQLAVCQQ-RIRRQLAREKKL 287 (336)
T ss_dssp -HHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred -HHHHHHHHHHH-HHHHHHHHHHHH
Confidence 23344455666 677887774433
No 115
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=95.67 E-value=0.11 Score=41.97 Aligned_cols=94 Identities=13% Similarity=0.038 Sum_probs=71.9
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHH
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALD 202 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~ 202 (374)
.+|..++..|++++|++.+.+.+.. +.. ..+++.....++...+++..+...+.++..... .+ ....
T Consensus 18 ~~a~~~~~~~~~~~A~~~~~~al~~----~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~---~~----~~~~ 84 (166)
T 1a17_A 18 TQANDYFKAKDYENAIKFYSQAIEL----NPS--NAIYYGNRSLAYLRTECYGYALGDATRAIELDK---KY----IKGY 84 (166)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----STT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TC----HHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHh----CCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---cc----HHHH
Confidence 4788999999999999888877642 111 246677788889999999999999999876631 12 2344
Q ss_pred HHHHHHhhcccccHHHHHHHHHHhccCc
Q psy4083 203 LQSGILHAADEQDFKTAFSYFYEAFEGF 230 (374)
Q Consensus 203 ~~~G~~~~~~~rdy~~A~~~F~eaf~~f 230 (374)
...|.++. ..++|..|...|-.+.+..
T Consensus 85 ~~~a~~~~-~~~~~~~A~~~~~~a~~~~ 111 (166)
T 1a17_A 85 YRRAASNM-ALGKFRAALRDYETVVKVK 111 (166)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHH-HhccHHHHHHHHHHHHHhC
Confidence 56677888 8999999999999887643
No 116
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=95.65 E-value=0.41 Score=40.67 Aligned_cols=113 Identities=17% Similarity=0.183 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHH
Q psy4083 39 QNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQ 118 (374)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~ 118 (374)
..+..++..++..|+|++..+.+.......+.-+.. ... ...+. ...+....
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~-------------------~~~---~~~~~------~~~~~~~~ 90 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEW-------------------DDQ---ILLDK------KKNIEISC 90 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTC-------------------CCH---HHHHH------HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccccc-------------------chh---hHHHH------HHHHHHHH
Confidence 456778999999999999887777666544332100 000 00000 01111122
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy4083 119 SLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTT 187 (374)
Q Consensus 119 ~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~ 187 (374)
.. .+|..|...|+|++|++.+.+.++. +. .....+.....++...+++..|...+.++...
T Consensus 91 ~~--~la~~~~~~~~~~~A~~~~~~al~~----~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 91 NL--NLATCYNKNKDYPKAIDHASKVLKI----DK--NNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HH--HHHHHHHHTTCHHHHHHHHHHHHHH----ST--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHhcCHHHHHHHHHHHHHh----Cc--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 22 5788999999999999888877742 21 12456778888999999999999999998776
No 117
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=95.58 E-value=1.4 Score=40.44 Aligned_cols=20 Identities=20% Similarity=0.077 Sum_probs=15.5
Q ss_pred HHHHHHHHHhCCHHHHHHHH
Q psy4083 42 LQLGEKYKQEGKAIELAELI 61 (374)
Q Consensus 42 ~~l~~~~~~~~~~~~l~~~l 61 (374)
+-+++.|...|+++.+...+
T Consensus 38 ~~l~r~yi~~g~~~~al~~~ 57 (291)
T 3mkr_A 38 VFLYRAYLAQRKYGVVLDEI 57 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHS
T ss_pred HHHHHHHHHCCCHHHHHHHh
Confidence 45588999999998886544
No 118
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=95.57 E-value=0.14 Score=49.29 Aligned_cols=99 Identities=12% Similarity=0.105 Sum_probs=77.8
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHh----------ccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccC
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKL----------DDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIY 192 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~----------dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~ 192 (374)
.+|..++..|+|++|++.+.+.++.+... ........++.....++...+++..|..++.+|....
T Consensus 228 ~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~---- 303 (370)
T 1ihg_A 228 NIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID---- 303 (370)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC----
Confidence 58889999999999999999998754432 1234556788899999999999999999999987652
Q ss_pred CChhhhHHHHHHHHHHhhcccccHHHHHHHHHHhccC
Q psy4083 193 CPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEG 229 (374)
Q Consensus 193 ~~~~~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~ 229 (374)
|. ........|.++. ..++|.+|..+|-.+.+-
T Consensus 304 --p~-~~~a~~~lg~~~~-~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 304 --PS-NTKALYRRAQGWQ-GLKEYDQALADLKKAQEI 336 (370)
T ss_dssp --TT-CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred --ch-hHHHHHHHHHHHH-HccCHHHHHHHHHHHHHh
Confidence 22 1334456678888 899999999999988653
No 119
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=95.57 E-value=0.11 Score=42.02 Aligned_cols=93 Identities=19% Similarity=0.153 Sum_probs=70.1
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHH
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALD 202 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~ 202 (374)
.+|..++..|+|++|++.+.+++. .+.. -.+.+.....++...+++..+...+.++..... .+|. ..
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~----~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~----~~ 89 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCM----LDHY--DARYFLGLGACRQSLGLYEQALQSYSYGALMDI---NEPR----FP 89 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH----HCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCTH----HH
T ss_pred HHHHHHHHHccHHHHHHHHHHHHH----hCCc--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC---CCcH----HH
Confidence 478889999999999888877763 2221 235566677888999999999999999877631 2332 34
Q ss_pred HHHHHHhhcccccHHHHHHHHHHhccC
Q psy4083 203 LQSGILHAADEQDFKTAFSYFYEAFEG 229 (374)
Q Consensus 203 ~~~G~~~~~~~rdy~~A~~~F~eaf~~ 229 (374)
...|.++. ..++|..|...|-.+.+.
T Consensus 90 ~~lg~~~~-~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 90 FHAAECHL-QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHh
Confidence 55688888 899999999999887543
No 120
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=95.52 E-value=0.11 Score=42.84 Aligned_cols=93 Identities=16% Similarity=0.133 Sum_probs=70.1
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHH
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALD 202 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~ 202 (374)
.+|..++..|+|++|+..+.+++. .+.. -.+.+.....++...|++..|...+.++..... .+|. ..
T Consensus 26 ~~g~~~~~~g~~~~A~~~~~~al~----~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p---~~~~----~~ 92 (148)
T 2vgx_A 26 SLAFNQYQSGXYEDAHXVFQALCV----LDHY--DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI---XEPR----FP 92 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH----HCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---TCTH----HH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHH----cCcc--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC---CCch----HH
Confidence 478899999999999888877763 2221 134556677888999999999999999877631 2332 33
Q ss_pred HHHHHHhhcccccHHHHHHHHHHhccC
Q psy4083 203 LQSGILHAADEQDFKTAFSYFYEAFEG 229 (374)
Q Consensus 203 ~~~G~~~~~~~rdy~~A~~~F~eaf~~ 229 (374)
...|.++. ..|+|..|...|-.+.+-
T Consensus 93 ~~lg~~~~-~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 93 FHAAECLL-QXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHH
Confidence 45688888 999999999999888653
No 121
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=95.48 E-value=0.17 Score=38.31 Aligned_cols=93 Identities=18% Similarity=0.201 Sum_probs=69.2
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHH
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALD 202 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~ 202 (374)
.++..+...|++++|++.+.+.+.. .. ...+.+.....++...+++..+..++.++..... .++ ...
T Consensus 14 ~~~~~~~~~~~~~~A~~~~~~~~~~----~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---~~~----~~~ 80 (125)
T 1na0_A 14 NLGNAYYKQGDYDEAIEYYQKALEL----DP--NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP---NNA----EAW 80 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----CT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCH----HHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH----Cc--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC---ccH----HHH
Confidence 4788899999999998888777642 11 1135667778889999999999999998866521 122 334
Q ss_pred HHHHHHhhcccccHHHHHHHHHHhccC
Q psy4083 203 LQSGILHAADEQDFKTAFSYFYEAFEG 229 (374)
Q Consensus 203 ~~~G~~~~~~~rdy~~A~~~F~eaf~~ 229 (374)
...|.++. ..++|..|...|-.+.+.
T Consensus 81 ~~la~~~~-~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 81 YNLGNAYY-KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HhcCHHHHHHHHHHHHHh
Confidence 45677788 899999999999888653
No 122
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=95.48 E-value=0.13 Score=43.02 Aligned_cols=94 Identities=12% Similarity=0.022 Sum_probs=72.0
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHH
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALD 202 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~ 202 (374)
.+|..+++.|+|++|+..+.+++. .+. .-.+.+..--.++...|++..|...+.+|..+.. .+|. ..
T Consensus 41 ~lg~~~~~~g~~~eA~~~~~~al~----~~P--~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P---~~~~----~~ 107 (151)
T 3gyz_A 41 SYAYDFYNKGRIEEAEVFFRFLCI----YDF--YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK---NDYT----PV 107 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH----HCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS---SCCH----HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH----hCC--CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC---CCcH----HH
Confidence 478889999999999988887763 222 1234666777889999999999999999987631 2232 34
Q ss_pred HHHHHHhhcccccHHHHHHHHHHhccCc
Q psy4083 203 LQSGILHAADEQDFKTAFSYFYEAFEGF 230 (374)
Q Consensus 203 ~~~G~~~~~~~rdy~~A~~~F~eaf~~f 230 (374)
...|..+. ..|+|..|...|-.+.+-.
T Consensus 108 ~~lg~~~~-~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 108 FHTGQCQL-RLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHhC
Confidence 45688888 8999999999999887644
No 123
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=95.46 E-value=0.5 Score=37.61 Aligned_cols=59 Identities=17% Similarity=0.204 Sum_probs=45.9
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q psy4083 124 LIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTA 188 (374)
Q Consensus 124 La~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~ 188 (374)
+|..|...|++++|++.+.+.++ .+.. -.+.+.....++..+|++..|...+.++..+.
T Consensus 53 ~~~~~~~~~~~~~A~~~~~~al~----~~p~--~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 53 RAACLTKLMEFQRALDDCDTCIR----LDSK--FIKGYIRKAACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH----HCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhhHHHhhccHHHHHHHHHHHHH----hhhh--hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 67788899999999888877763 1222 24567778888899999999999999987763
No 124
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=95.39 E-value=0.4 Score=37.01 Aligned_cols=62 Identities=15% Similarity=0.087 Sum_probs=47.9
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTT 187 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~ 187 (374)
.+|..+...|++++|++.+.++++. ..+.....+.++....++...|++..+...+..+...
T Consensus 44 ~lg~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 44 WLGESYYATRNFQLAEAQFRDLVSR---YPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4688899999999998888877642 1222334567777888999999999999999987655
No 125
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=95.39 E-value=0.18 Score=38.44 Aligned_cols=93 Identities=18% Similarity=0.228 Sum_probs=67.0
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHH
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALD 202 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~ 202 (374)
.+|..+...|++++|++.+.+.+.. ... ..+.+.....++...+++..+..++.++..... .++ ...
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~----~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~----~~~ 72 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALEL----DPR--SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP---RSA----EAW 72 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TCH----HHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHc----CCc--chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC---Cch----HHH
Confidence 4788899999999998887776531 111 134556667888899999999999988866521 122 234
Q ss_pred HHHHHHhhcccccHHHHHHHHHHhccC
Q psy4083 203 LQSGILHAADEQDFKTAFSYFYEAFEG 229 (374)
Q Consensus 203 ~~~G~~~~~~~rdy~~A~~~F~eaf~~ 229 (374)
...|.++. ..++|..|...|-++.+.
T Consensus 73 ~~l~~~~~-~~~~~~~A~~~~~~~~~~ 98 (136)
T 2fo7_A 73 YNLGNAYY-KQGDYDEAIEYYQKALEL 98 (136)
T ss_dssp HHHHHHHH-TTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HhcCHHHHHHHHHHHHHh
Confidence 45577778 889999999998887653
No 126
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=95.38 E-value=1.1 Score=42.85 Aligned_cols=138 Identities=15% Similarity=0.179 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHh-----hH
Q psy4083 39 QNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEE-----RR 113 (374)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~-----~r 113 (374)
++++.-+..+.+.|++....++...+......-.-......+.++++.+...|.+...+..++.++|.|.... |.
T Consensus 56 dLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gd 135 (336)
T 3lpz_A 56 DILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGD 135 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCC
T ss_pred HHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCC
Confidence 4555556666666666666555554444442222122335666777777777765566788899999998742 34
Q ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHH-----------HHHHHHHHHHhccchhHHHHHHHH-HHHHHHhCCHHHHHHHH
Q psy4083 114 TFLRQSLEARLIALYFDTGEYTEALKL-----------SSSLLKELKKLDDKNLLVEVLLLE-SKTYHALSNLSTSRASL 181 (374)
Q Consensus 114 ~~lr~~l~~kLa~~~~~~g~~~~Al~~-----------~~~ll~el~~~dd~~~~lev~l~e-i~l~~~~~n~~~a~~~~ 181 (374)
-.|.+ .+|..|.+.|++.+|..- +.+++-+....++. .-.++++.+ +=-|...+|..-|+.++
T Consensus 136 p~LH~----~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~-~e~dlfiaRaVL~yL~l~n~~~A~~~~ 210 (336)
T 3lpz_A 136 PELHH----VVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDES-HTAPLYCARAVLPYLLVANVRAANTAY 210 (336)
T ss_dssp HHHHH----HHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCG-GGHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHH----HHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 45554 368899999999988433 23344333333332 223433333 23334556666665544
No 127
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=95.38 E-value=0.52 Score=36.59 Aligned_cols=96 Identities=14% Similarity=0.112 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHHH
Q psy4083 40 NILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQS 119 (374)
Q Consensus 40 ~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~~ 119 (374)
.+...+..++..|+|++..+.+....... |+.. .. .
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~----------------------p~~~------------------~~----~ 41 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA----------------------PEDA------------------RG----Y 41 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------TTCH------------------HH----H
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC----------------------CCCh------------------HH----H
Confidence 45667899999999999876665443322 2110 01 1
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy4083 120 LEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTT 187 (374)
Q Consensus 120 l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~ 187 (374)
. .+|..|...|++++|+..+.+.++ .+.. -.+.+.....++...|++..+...+.++...
T Consensus 42 ~--~~a~~~~~~~~~~~A~~~~~~al~----~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 42 S--NRAAALAKLMSFPEAIADCNKAIE----KDPN--FVRAYIRKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp H--HHHHHHHHTTCHHHHHHHHHHHHH----HCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHhcCHHHHHHHHHHHHH----hCCC--cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 1 367788889999999888877764 1221 1456777788888999999999999888765
No 128
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=95.37 E-value=0.02 Score=43.40 Aligned_cols=90 Identities=9% Similarity=0.048 Sum_probs=62.7
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHH
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALD 202 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~ 202 (374)
.+|..++..|+|++|++.+.+.+.. +.. -.+++.....++...|++..+...+.++...... ..++.......
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~~----~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~ 81 (111)
T 2l6j_A 9 EQGNSLFKQGLYREAVHCYDQLITA----QPQ--NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc----CCC--CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHHH
Confidence 5788999999999999988877742 221 1456778888999999999999999998766311 12333344555
Q ss_pred HHHHHHhhcccccHHHHH
Q psy4083 203 LQSGILHAADEQDFKTAF 220 (374)
Q Consensus 203 ~~~G~~~~~~~rdy~~A~ 220 (374)
...|..+. ..+++..|.
T Consensus 82 ~~~~~~~~-~~~~~~~a~ 98 (111)
T 2l6j_A 82 YRLELAQG-AVGSVQIPV 98 (111)
T ss_dssp HHHHHHHH-HHHCCCCCS
T ss_pred HHHHHHHH-HHHhHhhhH
Confidence 55666666 556544443
No 129
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=95.35 E-value=0.13 Score=40.72 Aligned_cols=92 Identities=12% Similarity=-0.008 Sum_probs=69.3
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHH
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALD 202 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~ 202 (374)
.+|..+.+.|++++|+..+.+.++ .+.. -.+.+.....++...|++..+...+.++..... .++ ...
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~----~~P~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P---~~~----~~~ 88 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQ----KEPE--REEAWRSLGLTQAENEKDGLAIIALNHARMLDP---KDI----AVH 88 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH----HSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCH----HHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH----HCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCH----HHH
Confidence 467788999999999988877764 1221 245667778888999999999999999877631 122 234
Q ss_pred HHHHHHhhcccccHHHHHHHHHHhcc
Q psy4083 203 LQSGILHAADEQDFKTAFSYFYEAFE 228 (374)
Q Consensus 203 ~~~G~~~~~~~rdy~~A~~~F~eaf~ 228 (374)
..-|.++. ..++|.+|...|-.+.+
T Consensus 89 ~~la~~~~-~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 89 AALAVSHT-NEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHH
Confidence 56677788 89999999999888765
No 130
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=95.23 E-value=0.57 Score=46.34 Aligned_cols=159 Identities=13% Similarity=0.068 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhcc-ccc-------hhhhHHHHHHHHHHHHH
Q psy4083 39 QNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDL-ETR-------TGMEVALCKECIEWAKE 110 (374)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~-~~~-------~~~~~~l~~e~i~~~~~ 110 (374)
.+.+.++..+...|++++..+.+......-+. . .....+-..+... .+. .+.-++.+.++++...+
T Consensus 138 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~---~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 211 (474)
T 4abn_A 138 EAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN---K---VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL 211 (474)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC---H---HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---H---HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC
Confidence 35678999999999999998888887766544 1 1222222222111 111 12223344444433222
Q ss_pred hhHHHHHHHHHHHHHHHHHhc--------cCHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHhCCHHHHHHHH
Q psy4083 111 ERRTFLRQSLEARLIALYFDT--------GEYTEALKLSSSLLKELKKLDD-KNLLVEVLLLESKTYHALSNLSTSRASL 181 (374)
Q Consensus 111 ~~r~~lr~~l~~kLa~~~~~~--------g~~~~Al~~~~~ll~el~~~dd-~~~~lev~l~ei~l~~~~~n~~~a~~~~ 181 (374)
+...| . .||.+|... |++++|++.+.+.++- +. .....+.+.....++...+++..|...+
T Consensus 212 ~~~~~----~--~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 281 (474)
T 4abn_A 212 DGRSW----Y--ILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV----DRKASSNPDLHLNRATLHKYEESYGEALEGF 281 (474)
T ss_dssp CHHHH----H--HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH----CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHH----H--HHHHHHHHHHHhhccccchHHHHHHHHHHHHHh----CCCcccCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 22333 2 467788877 8999999888877742 11 1144577888889999999999999999
Q ss_pred HHHHhhccccCCChhhhHHHHHHHHHHhhcccccHHHHHH
Q psy4083 182 TSARTTANSIYCPPKMQAALDLQSGILHAADEQDFKTAFS 221 (374)
Q Consensus 182 ~~a~~~~~~~~~~~~~~~~i~~~~G~~~~~~~rdy~~A~~ 221 (374)
.+|..... .++ .....-|.++. ..+++.+|..
T Consensus 282 ~~al~l~p---~~~----~a~~~l~~~~~-~lg~~~eAi~ 313 (474)
T 4abn_A 282 SQAAALDP---AWP----EPQQREQQLLE-FLSRLTSLLE 313 (474)
T ss_dssp HHHHHHCT---TCH----HHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHhCC---CCH----HHHHHHHHHHH-HHHHHHHHHH
Confidence 99877631 122 22333445555 5666666554
No 131
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=95.11 E-value=1.3 Score=41.88 Aligned_cols=99 Identities=12% Similarity=0.039 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHh-----
Q psy4083 37 KEQNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEE----- 111 (374)
Q Consensus 37 ~e~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~----- 111 (374)
.-++++.-+..+.+.|++....++...+......-.....+..+.++++.+...|.....+...+.++|+|....
T Consensus 52 AidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~ 131 (312)
T 2wpv_A 52 AIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKF 131 (312)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTT
T ss_pred HHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCC
Confidence 335556666666666666666665544444433222222345666666666666655566788999999998743
Q ss_pred hHHHHHHHHHHHHHHHHHhccCHHHHHH
Q psy4083 112 RRTFLRQSLEARLIALYFDTGEYTEALK 139 (374)
Q Consensus 112 ~r~~lr~~l~~kLa~~~~~~g~~~~Al~ 139 (374)
|.-.|.+ -+|..|.+.|++.+|..
T Consensus 132 Gdp~LH~----~~a~~~~~e~~~~~A~~ 155 (312)
T 2wpv_A 132 GDPYLHN----TIGSKLLEGDFVYEAER 155 (312)
T ss_dssp CCHHHHH----HHHHHHHHTTCHHHHHH
T ss_pred CCHHHHH----HHHHHHhhcCCHHHHHH
Confidence 2333333 36888999999999855
No 132
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=95.05 E-value=0.8 Score=45.11 Aligned_cols=149 Identities=15% Similarity=0.181 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHH
Q psy4083 39 QNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQ 118 (374)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~ 118 (374)
.+...++..+++.|+|++....+.......+..+. + ++ +.. .. ........
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------------~---~~--~~~----------~~-~~~~~~~~ 319 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG-------------L---SE--KES----------KA-SESFLLAA 319 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS-------------C---CH--HHH----------HH-HHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc-------------C---Ch--HHH----------HH-HHHHHHHH
Confidence 45677899999999999998877766655444321 0 00 100 00 11222333
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhh
Q psy4083 119 SLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQ 198 (374)
Q Consensus 119 ~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~ 198 (374)
.. .+|..|...|+|++|+..+.+++.- +.. ....++....++..++++..|...+.+|..+.. .++
T Consensus 320 ~~--nla~~~~~~g~~~~A~~~~~~al~~----~p~--~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P---~~~--- 385 (457)
T 1kt0_A 320 FL--NLAMCYLKLREYTKAVECCDKALGL----DSA--NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP---QNK--- 385 (457)
T ss_dssp HH--HHHHHHHHTTCHHHHHHHHHHHHHH----STT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----------
T ss_pred HH--HHHHHHHHhcCHHHHHHHHHHHHhc----CCc--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CCH---
Confidence 33 5788999999999999998888741 222 246678888999999999999999999877631 122
Q ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHh-ccCcCc
Q psy4083 199 AALDLQSGILHAADEQDFKTAFSYFYEA-FEGFST 232 (374)
Q Consensus 199 ~~i~~~~G~~~~~~~rdy~~A~~~F~ea-f~~f~~ 232 (374)
.....-|.++. ..+++..|...++.. |..+..
T Consensus 386 -~a~~~l~~~~~-~~~~~~~a~~~~~~~~f~k~~~ 418 (457)
T 1kt0_A 386 -AARLQISMCQK-KAKEHNERDRRIYANMFKKFAE 418 (457)
T ss_dssp -CHHHHHHHHHH-HHHHHHHHHHHHHHHC------
T ss_pred -HHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhh
Confidence 23334455566 677888777666554 544443
No 133
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=94.92 E-value=0.68 Score=38.52 Aligned_cols=70 Identities=11% Similarity=0.141 Sum_probs=51.2
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHH
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALD 202 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~ 202 (374)
.||..|...|+|++|+..+.+.+. .+... .+.+...-.++...|++..|...+.++.... +++.+..+.+
T Consensus 75 ~lg~~~~~~g~~~~Ai~~~~~al~----l~P~~--~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~----~~~~~~~~A~ 144 (151)
T 3gyz_A 75 GLAAIYQIKEQFQQAADLYAVAFA----LGKND--YTPVFHTGQCQLRLKAPLKAKECFELVIQHS----NDEKLKIKAQ 144 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH----HSSSC--CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CCHHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHHHHHHHh----hCCCC--cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCHHHHHHHH
Confidence 378889999999999988887763 22211 2466777788899999999999999988764 4555444433
No 134
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=94.88 E-value=0.69 Score=37.05 Aligned_cols=98 Identities=22% Similarity=0.175 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHH
Q psy4083 39 QNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQ 118 (374)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~ 118 (374)
..++.++..++..|+|++..+.+...... - |+ +...|+
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~-------------------~---p~------------------~~~~~~-- 56 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML-------------------D---HY------------------DARYFL-- 56 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------C---TT------------------CHHHHH--
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh-------------------C---Cc------------------cHHHHH--
Confidence 45677799999999999876655433221 1 21 011221
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q psy4083 119 SLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTA 188 (374)
Q Consensus 119 ~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~ 188 (374)
.+|.+|...|++++|++.+.+.+. .+.. -.+.+.....++...|++..+...+.++....
T Consensus 57 ----~lg~~~~~~g~~~~A~~~~~~al~----~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 57 ----GLGACRQSLGLYEQALQSYSYGAL----MDIN--EPRFPFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp ----HHHHHHHHTTCHHHHHHHHHHHHH----HCTT--CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHhhHHHHHHHHHHHHh----cCCC--CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 367788899999999888877764 1211 12455667788889999999999999887764
No 135
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=94.84 E-value=0.55 Score=39.76 Aligned_cols=133 Identities=14% Similarity=0.069 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHHHH
Q psy4083 41 ILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQSL 120 (374)
Q Consensus 41 ~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~~l 120 (374)
.+.++..++..|+|++..+.+.... ..- . .....+-..... .+..+.-++.+..+++..... .....
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~---~~~--~---~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~----~~~~~ 75 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ---DPH--S---RICFNIGCMYTI-LKNMTEAEKAFTRSINRDKHL----AVAYF 75 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS---SCC--H---HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC----HHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc---CCC--h---HHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCccc----hHHHH
Confidence 5678999999999999877766542 111 1 111111111111 122333355555555432211 12223
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHhc----------cchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q psy4083 121 EARLIALYFDTGEYTEALKLSSSLLKELKKLD----------DKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTA 188 (374)
Q Consensus 121 ~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~d----------d~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~ 188 (374)
.+|.+|...|++++|++.+.+.+....... ......+++.....++...|++.++...+.++....
T Consensus 76 --~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 76 --QRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp --HHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred --HHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 578899999999999988887774322211 122456788888999999999999999999987663
No 136
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.81 E-value=0.38 Score=37.17 Aligned_cols=76 Identities=13% Similarity=0.031 Sum_probs=58.1
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHH
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLD-DKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAAL 201 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~d-d~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i 201 (374)
.+|.++++.|+|..|...+...++-..... .+....+++..-...++.+|++..|..++..+.... ..++....-+
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~---P~~~~~~~n~ 86 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD---PEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC---CCCHHHHhhH
Confidence 589999999999999999988876543322 234567888888899999999999999999987763 2345554433
No 137
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=94.81 E-value=0.49 Score=36.27 Aligned_cols=97 Identities=11% Similarity=0.082 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHH
Q psy4083 39 QNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQ 118 (374)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~ 118 (374)
.+++.++..++..|+|++..+.+....... |+. . ..|
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----------------------~~~----~--------------~~~--- 53 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRN----------------------PKD----A--------------KLY--- 53 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTC----------------------TTC----H--------------HHH---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----------------------CCc----H--------------HHH---
Confidence 345566999999999999877666554321 110 0 011
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy4083 119 SLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTT 187 (374)
Q Consensus 119 ~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~ 187 (374)
. .+|.+|...|++++|++.+.+.++. +.. ..+.+.....++...+++..+..++.++...
T Consensus 54 -~--~la~~~~~~~~~~~A~~~~~~a~~~----~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 54 -S--NRAACYTKLLEFQLALKDCEECIQL----EPT--FIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp -H--HHHHHHTTTTCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -H--HHHHHHHHhccHHHHHHHHHHHHHh----CCC--chHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 1 3677788888888887777666531 111 2345666677788888888888888887654
No 138
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=94.68 E-value=0.54 Score=45.23 Aligned_cols=182 Identities=12% Similarity=0.011 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHH--HHHHHHHHHhhc-cc---cchhhhHHHHHHHHHH---HHH
Q psy4083 40 NILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAA--KLVRSLVDFFLD-LE---TRTGMEVALCKECIEW---AKE 110 (374)
Q Consensus 40 ~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~--k~i~~ild~~~~-~~---~~~~~~~~l~~e~i~~---~~~ 110 (374)
+...++..+...|++++..+.+.......+..+..... ..-+........ .. ...........+++.. +..
T Consensus 249 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 328 (472)
T 4g1t_A 249 VLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE 328 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 35568899999999999988888877766554332211 111111111100 00 0001111112222221 111
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHhhcc
Q psy4083 111 ERRTFLRQSLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKT-YHALSNLSTSRASLTSARTTAN 189 (374)
Q Consensus 111 ~~r~~lr~~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l-~~~~~n~~~a~~~~~~a~~~~~ 189 (374)
.+........ .+|.+|...|++++|++.+.+.+. ...+....-.++..-..+ ....+++.+|...+.+|..+..
T Consensus 329 ~~~~~~~~~~--~lg~~~~~~~~~~~A~~~~~kaL~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~ 403 (472)
T 4g1t_A 329 ANDNLFRVCS--ILASLHALADQYEEAEYYFQKEFS---KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQ 403 (472)
T ss_dssp HCTTTCCCHH--HHHHHHHHTTCHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCC
T ss_pred cCCchhhhhh--hHHHHHHHhccHHHHHHHHHHHHh---cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence 1111112222 589999999999999998887763 111111222222222222 3467899999999988876532
Q ss_pred ccCC------------------ChhhhHHHHHHHHHHhhcccccHHHHHHHHHHhcc
Q psy4083 190 SIYC------------------PPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFE 228 (374)
Q Consensus 190 ~~~~------------------~~~~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~ 228 (374)
.... +|.. +.....-|.++. ..|+|.+|..+|-.|.+
T Consensus 404 ~~~~~~~~~~~l~~~~~~~l~~~p~~-~~~~~~LG~~~~-~~g~~~~A~~~y~kALe 458 (472)
T 4g1t_A 404 KSREKEKMKDKLQKIAKMRLSKNGAD-SEALHVLAFLQE-LNEKMQQADEDSERGLE 458 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCC-C-TTHHHHHHHHHH-HHHHCC-----------
T ss_pred ccHHHHHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHH-HcCCHHHHHHHHHHHHh
Confidence 1100 1111 122344577788 88999999998887765
No 139
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=94.66 E-value=0.23 Score=46.86 Aligned_cols=99 Identities=19% Similarity=0.157 Sum_probs=76.1
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhc---------cchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCC
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLD---------DKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYC 193 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~d---------d~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~ 193 (374)
.+|..|+..|+|++|+..+.+.+....... .......++.....++...+++..|..++.+|....
T Consensus 152 ~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~----- 226 (336)
T 1p5q_A 152 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD----- 226 (336)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----
Confidence 478899999999999999988875433221 023346888899999999999999999999987763
Q ss_pred ChhhhHHHHHHHHHHhhcccccHHHHHHHHHHhccC
Q psy4083 194 PPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEG 229 (374)
Q Consensus 194 ~~~~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~ 229 (374)
|. .......-|.+++ ..++|..|...|-.+.+-
T Consensus 227 -p~-~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 227 -SN-NEKGLSRRGEAHL-AVNDFELARADFQKVLQL 259 (336)
T ss_dssp -TT-CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred -CC-cHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHH
Confidence 21 1234456688888 899999999999888653
No 140
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=94.64 E-value=0.9 Score=37.13 Aligned_cols=98 Identities=8% Similarity=0.038 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHH
Q psy4083 39 QNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQ 118 (374)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~ 118 (374)
..++.++..++..|+|++..+.+.......+..+ ..|
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----------------------------------------~~~--- 48 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANP----------------------------------------IYL--- 48 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----------------------------------------HHH---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCH----------------------------------------HHH---
Confidence 4566779999999999998777765544322110 011
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q psy4083 119 SLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTA 188 (374)
Q Consensus 119 ~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~ 188 (374)
. .+|.+|...|+|++|+..+.+.+. .+.. -.+.+.....++...+++..+...+.++....
T Consensus 49 -~--~l~~~~~~~g~~~~A~~~~~~al~----~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 49 -S--NRAAAYSASGQHEKAAEDAELATV----VDPK--YSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp -H--HHHHHHHHTTCHHHHHHHHHHHHH----HCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -H--HHHHHHHHccCHHHHHHHHHHHHH----hCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 1 367777788888888777766653 1111 14566667777788888888888888876653
No 141
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=94.61 E-value=0.24 Score=47.69 Aligned_cols=105 Identities=17% Similarity=0.122 Sum_probs=72.9
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhc-c--chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCCh-hhh
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLD-D--KNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPP-KMQ 198 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~d-d--~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~-~~~ 198 (374)
.||.++...|++++|++.+.+.+.-.+... + ....+..+.....+|..+|++.+|..++.++..+......+. .-.
T Consensus 56 ~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~ 135 (472)
T 4g1t_A 56 LLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIES 135 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhh
Confidence 389999999999999999998876555431 1 223345566778889999999999999999877643221111 112
Q ss_pred HHHHHHHHH--HhhcccccHHHHHHHHHHhcc
Q psy4083 199 AALDLQSGI--LHAADEQDFKTAFSYFYEAFE 228 (374)
Q Consensus 199 ~~i~~~~G~--~~~~~~rdy~~A~~~F~eaf~ 228 (374)
+.+....|. +++ ..++|.+|..+|-.+.+
T Consensus 136 ~~~~~~~g~~~~~~-~~~~y~~A~~~~~kal~ 166 (472)
T 4g1t_A 136 PELDCEEGWTRLKC-GGNQNERAKVCFEKALE 166 (472)
T ss_dssp HHHHHHHHHHHHHH-CTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-ccccHHHHHHHHHHHHH
Confidence 344444453 445 56789999999988754
No 142
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=94.61 E-value=0.24 Score=43.52 Aligned_cols=91 Identities=16% Similarity=0.006 Sum_probs=45.5
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHHH
Q psy4083 124 LIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALDL 203 (374)
Q Consensus 124 La~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~~ 203 (374)
+|..+...|++++|++.+.+.+.. +.. ..+.+.....++...|++..+..++.++..... .+ .....
T Consensus 49 l~~~~~~~~~~~~A~~~~~~al~~----~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~---~~----~~~~~ 115 (275)
T 1xnf_A 49 RGVLYDSLGLRALARNDFSQALAI----RPD--MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP---TY----NYAHL 115 (275)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH----CCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TC----THHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHc----CCC--cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCc---cc----cHHHH
Confidence 555566666666665555544421 111 123444455555666666666666666544320 01 12233
Q ss_pred HHHHHhhcccccHHHHHHHHHHhcc
Q psy4083 204 QSGILHAADEQDFKTAFSYFYEAFE 228 (374)
Q Consensus 204 ~~G~~~~~~~rdy~~A~~~F~eaf~ 228 (374)
.-|.++. ..++|..|...|-.+.+
T Consensus 116 ~la~~~~-~~g~~~~A~~~~~~a~~ 139 (275)
T 1xnf_A 116 NRGIALY-YGGRDKLAQDDLLAFYQ 139 (275)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHH-HhccHHHHHHHHHHHHH
Confidence 3444555 55666666666655544
No 143
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=94.61 E-value=0.28 Score=48.46 Aligned_cols=99 Identities=16% Similarity=0.168 Sum_probs=76.9
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhc---------cchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCC
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLD---------DKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYC 193 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~d---------d~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~ 193 (374)
.+|..|+..|+|++|+..+.+.+....... .......++......+..++++..|...+.+|....
T Consensus 273 ~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~----- 347 (457)
T 1kt0_A 273 EKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD----- 347 (457)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----
Confidence 478899999999999999998886433321 123457888899999999999999999999987763
Q ss_pred ChhhhHHHHHHHHHHhhcccccHHHHHHHHHHhccC
Q psy4083 194 PPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEG 229 (374)
Q Consensus 194 ~~~~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~ 229 (374)
|. ........|..++ ..++|..|..+|-.+.+-
T Consensus 348 -p~-~~~a~~~~g~a~~-~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 348 -SA-NEKGLYRRGEAQL-LMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp -TT-CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTT
T ss_pred -Cc-cHHHHHHHHHHHH-HccCHHHHHHHHHHHHHh
Confidence 11 1233455688888 899999999999998663
No 144
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=94.53 E-value=0.48 Score=39.17 Aligned_cols=96 Identities=15% Similarity=0.113 Sum_probs=70.7
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH-HHHhCCH--HHHHHHHHHHHhhccccCCChhhhH
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKT-YHALSNL--STSRASLTSARTTANSIYCPPKMQA 199 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l-~~~~~n~--~~a~~~~~~a~~~~~~~~~~~~~~~ 199 (374)
.+|.+|...|++++|+..+.+.+.. +... .+++.....+ +...+++ ..+...+.++..... .++
T Consensus 49 ~lg~~~~~~~~~~~A~~~~~~al~~----~p~~--~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p---~~~---- 115 (177)
T 2e2e_A 49 LLGEYYLWQNDYSNSLLAYRQALQL----RGEN--AELYAALATVLYYQASQHMTAQTRAMIDKALALDS---NEI---- 115 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----HCSC--HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCT---TCH----
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc----CCCC--HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCC---CcH----
Confidence 5788999999999999888777642 2211 3455566666 7788998 999999999876531 122
Q ss_pred HHHHHHHHHhhcccccHHHHHHHHHHhccCcCc
Q psy4083 200 ALDLQSGILHAADEQDFKTAFSYFYEAFEGFST 232 (374)
Q Consensus 200 ~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~f~~ 232 (374)
......|.++. ..++|..|...|-.+++....
T Consensus 116 ~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 116 TALMLLASDAF-MQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHH-HcccHHHHHHHHHHHHhhCCC
Confidence 34455678888 899999999999999775543
No 145
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=94.51 E-value=0.65 Score=44.58 Aligned_cols=114 Identities=12% Similarity=0.133 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHH
Q psy4083 39 QNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQ 118 (374)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~ 118 (374)
..+..++..+++.|+|++..+.+.......+..+ .. .. .+. ..+ ........
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------~~----~~-~~~-------~~~----~~~~~~~~ 275 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------AA----AE-DAD-------GAK----LQPVALSC 275 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------HH----SC-HHH-------HGG----GHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------cc----cC-hHH-------HHH----HHHHHHHH
Confidence 4467889999999999999888777666544431 00 00 000 000 01112222
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q psy4083 119 SLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTA 188 (374)
Q Consensus 119 ~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~ 188 (374)
.. .+|..|+..|+|++|++.+.+++. . ++ ...+.+.....++...+++..|...+.+|....
T Consensus 276 ~~--nla~~~~~~g~~~~A~~~~~~al~----~-~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 276 VL--NIGACKLKMSDWQGAVDSCLEALE----I-DP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp HH--HHHHHHHHTTCHHHHHHHHHHHHT----T-CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HH--HHHHHHHhccCHHHHHHHHHHHHH----h-Cc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 22 478899999999999988887773 1 22 234667788889999999999999999998763
No 146
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=94.39 E-value=0.24 Score=45.32 Aligned_cols=92 Identities=11% Similarity=0.083 Sum_probs=71.0
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHH
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALD 202 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~ 202 (374)
.+|..++..|+|++|++.+.+.+.. +.. ..+++.....++...+++..|...+.++.... |.- ....
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~----~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p~~-~~~~ 75 (281)
T 2c2l_A 9 EQGNRLFVGRKYPEAAACYGRAITR----NPL--VAVYYTNRALCYLKMQQPEQALADCRRALELD------GQS-VKAH 75 (281)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----CSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC------TTC-HHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh----CCc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------CCC-HHHH
Confidence 5788999999999999888877642 221 24677788889999999999999999986552 221 2344
Q ss_pred HHHHHHhhcccccHHHHHHHHHHhcc
Q psy4083 203 LQSGILHAADEQDFKTAFSYFYEAFE 228 (374)
Q Consensus 203 ~~~G~~~~~~~rdy~~A~~~F~eaf~ 228 (374)
..-|.++. ..++|..|...|-.+.+
T Consensus 76 ~~lg~~~~-~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 76 FFLGQCQL-EMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHH
Confidence 55688888 89999999999988854
No 147
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=94.29 E-value=0.19 Score=39.01 Aligned_cols=89 Identities=13% Similarity=0.129 Sum_probs=61.2
Q ss_pred ccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHHHHHHHHhh
Q psy4083 131 TGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALDLQSGILHA 210 (374)
Q Consensus 131 ~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~~~~G~~~~ 210 (374)
.|++++|+..+.+.+. ...+.....+.+.....++...+++..+...+.++.... |.- .......|..+.
T Consensus 3 ~g~~~~A~~~~~~al~---~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------p~~-~~~~~~l~~~~~ 72 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIA---SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF------PNH-QALRVFYAMVLY 72 (117)
T ss_dssp ----CCCHHHHHHHHS---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTC-HHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHH---cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCc-hHHHHHHHHHHH
Confidence 5788888887777663 000023456778888889999999999999999887652 111 334455688888
Q ss_pred cccccHHHHHHHHHHhccCc
Q psy4083 211 ADEQDFKTAFSYFYEAFEGF 230 (374)
Q Consensus 211 ~~~rdy~~A~~~F~eaf~~f 230 (374)
..++|.+|...|-.+.+..
T Consensus 73 -~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 73 -NLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp -HHTCHHHHHHHHHHHHHHH
T ss_pred -HcCCHHHHHHHHHHHHHhC
Confidence 8999999999998887644
No 148
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=94.25 E-value=0.49 Score=40.86 Aligned_cols=92 Identities=10% Similarity=0.065 Sum_probs=67.5
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHH----------------HHHHHHHhCCHHHHHHHHHHHHh
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLL----------------ESKTYHALSNLSTSRASLTSART 186 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~----------------ei~l~~~~~n~~~a~~~~~~a~~ 186 (374)
..|..+++.|++++|+..+.+.+.. ++ .-.+.+.. ...++...|++..|...+.++..
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~-----~p-~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIAL-----NI-DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-----CH-HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-----CC-CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4677788999999999888877642 11 11223333 77888999999999999999876
Q ss_pred hccccCCChhhhHHHHHHHHHHhhcccccHHHHHHHHHHhcc
Q psy4083 187 TANSIYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFE 228 (374)
Q Consensus 187 ~~~~~~~~~~~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~ 228 (374)
.. |.- ......-|.+++ ..++|.+|...|-.+.+
T Consensus 83 ~~------p~~-~~~~~~lg~~~~-~~g~~~~A~~~~~~al~ 116 (208)
T 3urz_A 83 KA------PNN-VDCLEACAEMQV-CRGQEKDALRMYEKILQ 116 (208)
T ss_dssp HC------TTC-HHHHHHHHHHHH-HHTCHHHHHHHHHHHHH
T ss_pred HC------CCC-HHHHHHHHHHHH-HcCCHHHHHHHHHHHHH
Confidence 63 211 133445577788 89999999999988865
No 149
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=94.24 E-value=0.46 Score=47.05 Aligned_cols=99 Identities=7% Similarity=-0.002 Sum_probs=77.2
Q ss_pred hccCHHHHHHHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCC--ChhhhHHHHHHH
Q psy4083 130 DTGEYTEALKLSSSLLKELKKL--DDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYC--PPKMQAALDLQS 205 (374)
Q Consensus 130 ~~g~~~~Al~~~~~ll~el~~~--dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~--~~~~~~~i~~~~ 205 (374)
..|+|++|+.++.+.|.-..+. .+.......+-.-..+|..+|+|.+|..++.++..+....++ ||.+-..+.-+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL- 388 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL- 388 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH-
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH-
Confidence 4689999999999888765554 334567788888899999999999999999999877655444 67775555544
Q ss_pred HHHhhcccccHHHHHHHHHHhccCc
Q psy4083 206 GILHAADEQDFKTAFSYFYEAFEGF 230 (374)
Q Consensus 206 G~~~~~~~rdy~~A~~~F~eaf~~f 230 (374)
|.++. ..|+|.+|...|-.|++.+
T Consensus 389 a~~~~-~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 389 GRLYM-GLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHHHH-HTTCHHHHHHHHHHHHHHH
T ss_pred HHHHH-hccCHHHHHHHHHHHHHHH
Confidence 55567 8999999999998886544
No 150
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=94.10 E-value=1.1 Score=34.73 Aligned_cols=97 Identities=15% Similarity=0.079 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHHH
Q psy4083 40 NILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQS 119 (374)
Q Consensus 40 ~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~~ 119 (374)
..+.++..++..|+|++..+.+....... |+.. .. .
T Consensus 11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~----------------------~~~~------------------~~----~ 46 (137)
T 3q49_B 11 ELKEQGNRLFVGRKYPEAAACYGRAITRN----------------------PLVA------------------VY----Y 46 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------TTCH------------------HH----H
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhC----------------------cCcH------------------HH----H
Confidence 35667999999999999876665544321 2100 01 1
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q psy4083 120 LEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTA 188 (374)
Q Consensus 120 l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~ 188 (374)
. .+|.++...|++++|+..+.+.++ .+.. ..+.+.....++...+++..+...+.++....
T Consensus 47 ~--~l~~~~~~~~~~~~A~~~~~~al~----~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 47 T--NRALCYLKMQQPEQALADCRRALE----LDGQ--SVKAHFFLGQCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp H--HHHHHHHHTTCHHHHHHHHHHHHH----HCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHhcCHHHHHHHHHHHHH----hCch--hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHC
Confidence 1 368888899999999888777763 1211 24567777888889999999999998886653
No 151
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=93.81 E-value=1.6 Score=32.86 Aligned_cols=97 Identities=12% Similarity=0.051 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHH
Q psy4083 39 QNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQ 118 (374)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~ 118 (374)
.+.+.++..++..|++++..+.+...... . |+.. ..|
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------------------~---~~~~------------------~~~--- 49 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL-------------------N---PANA------------------VYF--- 49 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------C---TTCH------------------HHH---
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc-------------------C---CCCH------------------HHH---
Confidence 45667799999999999986665544322 1 2100 011
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy4083 119 SLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTT 187 (374)
Q Consensus 119 ~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~ 187 (374)
. .+|.++...|++++|++.+.+.+.. +.. ..+.+.....++...+++..+...+.++...
T Consensus 50 -~--~~a~~~~~~~~~~~A~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 50 -C--NRAAAYSKLGNYAGAVQDCERAICI----DPA--YSKAYGRMGLALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp -H--HHHHHHHHTTCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -H--HHHHHHHHhhchHHHHHHHHHHHhc----Ccc--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 1 3677888889999998877777642 111 1456677778888999999999999888765
No 152
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=93.78 E-value=1.5 Score=35.73 Aligned_cols=60 Identities=17% Similarity=0.072 Sum_probs=45.6
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTA 188 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~ 188 (374)
.+|..+...|++++|++.+.+.+. .+... .+.+..-..++...|++..|...+.++....
T Consensus 60 ~lg~~~~~~g~~~~A~~~~~~al~----l~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 60 GLGACRQAMGQYDLAIHSYSYGAV----MDIXE--PRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH----HSTTC--THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHh----cCCCC--chHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 378888999999999888877763 12111 2456667788899999999999999987764
No 153
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=93.75 E-value=3.1 Score=37.92 Aligned_cols=169 Identities=12% Similarity=0.098 Sum_probs=95.0
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHHHHH
Q psy4083 42 LQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQSLE 121 (374)
Q Consensus 42 ~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~~l~ 121 (374)
..++.++...|++++..+.+.......+.-+. .+-.......... +..+.-..++..+++.......+|+.
T Consensus 103 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~~~~~~~~~~-~~~~~A~~~~~~a~~~~p~~~~~~~~---- 173 (308)
T 2ond_A 103 FAYADYEESRMKYEKVHSIYNRLLAIEDIDPT----LVYIQYMKFARRA-EGIKSGRMIFKKAREDARTRHHVYVT---- 173 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH----HHHHHHHHHHHHH-HCHHHHHHHHHHHHTSTTCCTHHHHH----
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccccCcc----HHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCCCHHHHHH----
Confidence 35677788888888887777776654332211 0111111111000 11222233443444322112244441
Q ss_pred HHHHHHHH-hccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHH
Q psy4083 122 ARLIALYF-DTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAA 200 (374)
Q Consensus 122 ~kLa~~~~-~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~ 200 (374)
.+.+.. ..|++++|.+.+.+.++... . -.+++..-+.++...|++.+++.++.++.... . .+|.-...
T Consensus 174 --~a~~~~~~~~~~~~A~~~~~~al~~~p----~--~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-~--l~p~~~~~ 242 (308)
T 2ond_A 174 --AALMEYYCSKDKSVAFKIFELGLKKYG----D--IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG-S--LPPEKSGE 242 (308)
T ss_dssp --HHHHHHHTSCCHHHHHHHHHHHHHHHT----T--CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS-S--SCGGGCHH
T ss_pred --HHHHHHHHcCCHHHHHHHHHHHHHhCC----C--cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc-C--CCHHHHHH
Confidence 232322 36999999888887764221 1 24566677778888899999999999986541 0 14433344
Q ss_pred HHHHHHHHhhcccccHHHHHHHHHHhccCcC
Q psy4083 201 LDLQSGILHAADEQDFKTAFSYFYEAFEGFS 231 (374)
Q Consensus 201 i~~~~G~~~~~~~rdy~~A~~~F~eaf~~f~ 231 (374)
+...-|.+.. ..|++..|...+-.+.+.+.
T Consensus 243 l~~~~~~~~~-~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 243 IWARFLAFES-NIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp HHHHHHHHHH-HHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHHcc
Confidence 5555555566 67888888888877766554
No 154
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=93.66 E-value=1.6 Score=32.29 Aligned_cols=59 Identities=10% Similarity=0.121 Sum_probs=44.3
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTT 187 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~ 187 (374)
.+|.++...|++++|+..+.+.+.. +.. ..+.+.....++...+++..+...+..+...
T Consensus 43 ~~a~~~~~~~~~~~A~~~~~~~~~~----~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 43 NRSAAYAKKGDYQKAYEDGCKTVDL----KPD--WGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHh----Ccc--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 3677888889999998887776642 111 2356677778888999999999999888665
No 155
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=93.25 E-value=4.1 Score=35.88 Aligned_cols=161 Identities=16% Similarity=0.116 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHH
Q psy4083 39 QNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQ 118 (374)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~ 118 (374)
.+.+.++..+...|++++..+.+..... +..+. +--.+-.+...-....+..+.-+..+...++ .+ ....
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~--a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~----~~--~~~a 76 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACD--LKENS--GCFNLGVLYYQGQGVEKNLKKAASFYAKACD----LN--YSNG 76 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHH--HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----TT--CHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHH--HHHHHHHHHHcCCCcCCCHHHHHHHHHHHHH----CC--CHHH
Confidence 3567789999999999999888877665 11111 1111111211100001222333333433332 12 1122
Q ss_pred HHHHHHHHHHHh----ccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhhccc
Q psy4083 119 SLEARLIALYFD----TGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHA----LSNLSTSRASLTSARTTANS 190 (374)
Q Consensus 119 ~l~~kLa~~~~~----~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~----~~n~~~a~~~~~~a~~~~~~ 190 (374)
.. .|+.+|.. .|++++|++.+.+.+. .+ -.+.+..-..+|.. .+|+.++..++.+|....
T Consensus 77 ~~--~lg~~~~~g~~~~~~~~~A~~~~~~a~~----~~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-- 144 (273)
T 1ouv_A 77 CH--LLGNLYYSGQGVSQNTNKALQYYSKACD----LK----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-- 144 (273)
T ss_dssp HH--HHHHHHHHTSSSCCCHHHHHHHHHHHHH----TT----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--
T ss_pred HH--HHHHHHhCCCCcccCHHHHHHHHHHHHH----cC----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--
Confidence 22 57889999 9999999888877653 12 23456666777888 899999999999986542
Q ss_pred cCCChhhhHHHHHHHHHHhhcc----cccHHHHHHHHHHhccC
Q psy4083 191 IYCPPKMQAALDLQSGILHAAD----EQDFKTAFSYFYEAFEG 229 (374)
Q Consensus 191 ~~~~~~~~~~i~~~~G~~~~~~----~rdy~~A~~~F~eaf~~ 229 (374)
++.. ...-|.++. . .++|.+|..+|-.+.+.
T Consensus 145 ---~~~a----~~~lg~~~~-~~~~~~~~~~~A~~~~~~a~~~ 179 (273)
T 1ouv_A 145 ---DGDG----CTILGSLYD-AGRGTPKDLKKALASYDKACDL 179 (273)
T ss_dssp ---CHHH----HHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHT
T ss_pred ---cHHH----HHHHHHHHH-cCCCCCCCHHHHHHHHHHHHHC
Confidence 3322 223456666 5 89999999999888654
No 156
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=93.18 E-value=2 Score=32.00 Aligned_cols=59 Identities=19% Similarity=0.237 Sum_probs=43.5
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTT 187 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~ 187 (374)
.++.++...|++++|++.+.+.+.. +.. ..+.+.....++...+++..+..++.++...
T Consensus 48 ~la~~~~~~~~~~~A~~~~~~~~~~----~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 48 NLGNAYYKQGDYDEAIEYYQKALEL----DPN--NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHh----CCc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3677888889999998877766531 111 1345566778888999999999999888665
No 157
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=93.17 E-value=0.76 Score=42.94 Aligned_cols=124 Identities=15% Similarity=0.134 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhh
Q psy4083 118 QSLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKM 197 (374)
Q Consensus 118 ~~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~ 197 (374)
..+..-++..+.+.|+|++|.+++..++. .+... + ......-+++..++|+.+..+++.+.. .++|..
T Consensus 102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~-----~~p~~-~-~~~~~a~l~~~~~r~~dA~~~l~~a~~-----~~d~~~ 169 (282)
T 4f3v_A 102 LAITMGFAACEAAQGNYADAMEALEAAPV-----AGSEH-L-VAWMKAVVYGAAERWTDVIDQVKSAGK-----WPDKFL 169 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTSSCC-----TTCHH-H-HHHHHHHHHHHTTCHHHHHHHHTTGGG-----CSCHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----cCCch-H-HHHHHHHHHHHcCCHHHHHHHHHHhhc-----cCCccc
Confidence 34433578889999999999766654431 22322 3 666667799999999999999975422 246776
Q ss_pred hHHHHHHHHHHhhcccccHHHHHHHHHHhccCcCcccchh-HHHHHHHHHHHHHhcCCchh
Q psy4083 198 QAALDLQSGILHAADEQDFKTAFSYFYEAFEGFSTVDHNH-AMMSLKYMLLSKIMLNTPED 257 (374)
Q Consensus 198 ~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~f~~~~~~~-~~~~LkY~vL~~iL~~~~~~ 257 (374)
.+.+....|..+. ..++|..|..+|-.+..+-. .|. ...+..+..+|-.-.+..++
T Consensus 170 ~~~a~~~LG~al~-~LG~~~eAl~~l~~a~~g~~---~P~~~~da~~~~glaL~~lGr~de 226 (282)
T 4f3v_A 170 AGAAGVAHGVAAA-NLALFTEAERRLTEANDSPA---GEACARAIAWYLAMARRSQGNESA 226 (282)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSTT---TTTTHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHH-HCCCHHHHHHHHHHHhcCCC---CccccHHHHHHHHHHHHHcCCHHH
Confidence 6778899999999 99999999999998864321 133 44566677777544444433
No 158
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=93.04 E-value=2.4 Score=41.67 Aligned_cols=77 Identities=9% Similarity=-0.014 Sum_probs=60.6
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccC--CChhhh
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLD--DKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIY--CPPKMQ 198 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~d--d~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~--~~~~~~ 198 (374)
.|+.+|...|+|++|+..+.+++.-..+.- +-....-.+..-..+|..+|++..|..++.+|..+..... .||.+.
T Consensus 334 ~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 334 CAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 589999999999999999999998777653 2334555667778899999999999999999987764433 466655
Q ss_pred H
Q psy4083 199 A 199 (374)
Q Consensus 199 ~ 199 (374)
.
T Consensus 414 ~ 414 (429)
T 3qwp_A 414 D 414 (429)
T ss_dssp H
T ss_pred H
Confidence 4
No 159
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.99 E-value=2.5 Score=32.79 Aligned_cols=99 Identities=13% Similarity=0.069 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHHH
Q psy4083 40 NILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQS 119 (374)
Q Consensus 40 ~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~~ 119 (374)
..+.++..++..|+|++..+.+.......+.- .. .....
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-----------------------~~------------------~~~~~ 68 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGLDATP-----------------------QD------------------QAVLH 68 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH-----------------------HH------------------HHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc-----------------------hH------------------HHHHH
Confidence 35566999999999999877665554332210 00 00111
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy4083 120 LEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTT 187 (374)
Q Consensus 120 l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~ 187 (374)
. .++..|...|++++|+..+.+.++. +... .+.+.....++...+++..+...+.++...
T Consensus 69 ~--~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 69 R--NRAACHLKLEDYDKAETEASKAIEK----DGGD--VKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp H--HHHHHHHHTTCHHHHHHHHHHHHHH----TSCC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHccHHHHHHHHHHHHhh----CccC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 1 4788899999999998888777642 2211 566777888899999999999999998766
No 160
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=92.87 E-value=0.16 Score=39.06 Aligned_cols=45 Identities=13% Similarity=0.160 Sum_probs=40.8
Q ss_pred HHHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCcccee
Q psy4083 285 QNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGI 329 (374)
Q Consensus 285 ~~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~ak 329 (374)
..|++++....+|+++.||+.||+|+.-|.+.|..|...|.+.-.
T Consensus 5 ~~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 5 MEVRDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 457788888899999999999999999999999999999988754
No 161
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=92.82 E-value=4.1 Score=40.15 Aligned_cols=103 Identities=15% Similarity=0.197 Sum_probs=71.0
Q ss_pred hhHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHH
Q psy4083 96 MEVALCKECIEWAK---EERRTFLRQSLEARLIALYFDTGEYTEALKLSSSLLKELKKLD--DKNLLVEVLLLESKTYHA 170 (374)
Q Consensus 96 ~~~~l~~e~i~~~~---~~~r~~lr~~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~d--d~~~~lev~l~ei~l~~~ 170 (374)
.-..++.++++... ..+...+-..++ .||.+|...|+|++|+.++.+.+.-..+.- +-......+..-..+|..
T Consensus 316 eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~-nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~ 394 (433)
T 3qww_A 316 ELLEICELSQEKMSSVFEDSNVYMLHMMY-QAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMG 394 (433)
T ss_dssp HHHHHHHHHHHHHTTTBCTTSHHHHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCccChhchHHHHHHH-HHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHh
Confidence 33455555554322 112233333332 689999999999999999999987776652 334555666778899999
Q ss_pred hCCHHHHHHHHHHHHhhccccC--CChhhhH
Q psy4083 171 LSNLSTSRASLTSARTTANSIY--CPPKMQA 199 (374)
Q Consensus 171 ~~n~~~a~~~~~~a~~~~~~~~--~~~~~~~ 199 (374)
+|++..|..++.+|..+....+ .||.+..
T Consensus 395 qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 395 LENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 9999999999999988764443 4565543
No 162
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=92.78 E-value=1.2 Score=47.04 Aligned_cols=130 Identities=13% Similarity=0.123 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHHH
Q psy4083 40 NILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQS 119 (374)
Q Consensus 40 ~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~~ 119 (374)
+.+.++.++.+.|++++..+.+......-+....+... +-.++... +..+.-++.+..+|+-.. -+....
T Consensus 45 a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~n--Lg~~l~~~----g~~~~A~~~~~kAl~l~P----~~~~a~ 114 (723)
T 4gyw_A 45 AHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN--MGNTLKEM----QDVQGALQCYTRAIQINP----AFADAH 114 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH--HHHHHHHT----TCHHHHHHHHHHHHHHCT----TCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHc----CCHHHHHHHHHHHHHhCC----CCHHHH
Confidence 46788999999999999998888877766655333221 11112211 223333555555554322 122233
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy4083 120 LEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTT 187 (374)
Q Consensus 120 l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~ 187 (374)
. .||.+|.+.|++++|++.+.+.++ .+.. -.+.+..-..++...+++..+...+.++..+
T Consensus 115 ~--~Lg~~~~~~g~~~eAi~~~~~Al~----l~P~--~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l 174 (723)
T 4gyw_A 115 S--NLASIHKDSGNIPEAIASYRTALK----LKPD--FPDAYCNLAHCLQIVCDWTDYDERMKKLVSI 174 (723)
T ss_dssp H--HHHHHHHHTTCHHHHHHHHHHHHH----HCSC--CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred H--HHHHHHHHcCCHHHHHHHHHHHHH----hCCC--ChHHHhhhhhHHHhcccHHHHHHHHHHHHHh
Confidence 3 589999999999999998887774 1211 2356667778889999999999888887654
No 163
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=92.77 E-value=0.13 Score=38.75 Aligned_cols=43 Identities=14% Similarity=0.143 Sum_probs=39.4
Q ss_pred HHHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccc
Q psy4083 285 QNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFH 327 (374)
Q Consensus 285 ~~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~ 327 (374)
..|+.+++...+|+++.||+.|++|+.-|.+.|..|...|.+.
T Consensus 5 ~~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~ 47 (78)
T 1xn7_A 5 IQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAV 47 (78)
T ss_dssp HHHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 4577888889999999999999999999999999999999874
No 164
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=92.73 E-value=4.8 Score=35.36 Aligned_cols=27 Identities=26% Similarity=0.266 Sum_probs=16.2
Q ss_pred HHHHHHHHHHH----hCCHHHHHHHHHHHHh
Q psy4083 40 NILQLGEKYKQ----EGKAIELAELIKKTRP 66 (374)
Q Consensus 40 ~~~~l~~~~~~----~~~~~~l~~~l~~l~~ 66 (374)
+.+.++.++.. .|++++..+++.....
T Consensus 40 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~ 70 (273)
T 1ouv_A 40 GCFNLGVLYYQGQGVEKNLKKAASFYAKACD 70 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCCCHHHHHHHHHHHHH
Confidence 44556666666 6666666665555443
No 165
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=92.61 E-value=0.57 Score=44.14 Aligned_cols=99 Identities=13% Similarity=-0.011 Sum_probs=73.3
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhc---------c--chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcccc
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLD---------D--KNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSI 191 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~d---------d--~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~ 191 (374)
.+|..++..|+|++|+..+.+.+....... + ......+++....++...+++..|..++.++....
T Consensus 184 ~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--- 260 (338)
T 2if4_A 184 MDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE--- 260 (338)
T ss_dssp HHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Confidence 578899999999999999988775322110 0 11223478888899999999999999999987653
Q ss_pred CCChhhhHHHHHHHHHHhhcccccHHHHHHHHHHhccC
Q psy4083 192 YCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEG 229 (374)
Q Consensus 192 ~~~~~~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~ 229 (374)
|.- .......|..++ ..++|..|..+|-.+.+-
T Consensus 261 ---p~~-~~a~~~lg~a~~-~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 261 ---EKN-PKALFRRGKAKA-ELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp ---TTC-HHHHHHHHHHHH-TTTCHHHHHHHHHHTTC-
T ss_pred ---CCC-HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHH
Confidence 211 234456688888 899999999999988653
No 166
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=92.47 E-value=1.4 Score=37.59 Aligned_cols=105 Identities=12% Similarity=-0.006 Sum_probs=72.3
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHh------ccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcc-ccCCCh
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKL------DDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTAN-SIYCPP 195 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~------dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~-~~~~~~ 195 (374)
.+|..++..|+|++|+..|.+.++-.... +-...-...+......+..+|++..+...+++|..+-| .+-.+|
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p 95 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 95 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence 46778889999999999999998644331 00112234888999999999999999999999877510 011122
Q ss_pred h-hhHHHH--HHHHHHhhcccccHHHHHHHHHHhcc
Q psy4083 196 K-MQAALD--LQSGILHAADEQDFKTAFSYFYEAFE 228 (374)
Q Consensus 196 ~-~~~~i~--~~~G~~~~~~~rdy~~A~~~F~eaf~ 228 (374)
. ..+-++ ---|..+. ..++|.+|...|-.+.+
T Consensus 96 d~~~A~~~~~~~rG~aL~-~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 96 DEGKLWISAVYSRALALD-GLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp THHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhHHHHHH-HCCCHHHHHHHHHHHHh
Confidence 2 112200 33466666 78999999999988854
No 167
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=92.40 E-value=2.6 Score=40.61 Aligned_cols=166 Identities=9% Similarity=-0.004 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccc-hhhhHHHHHHHHHHHHHhhHHH
Q psy4083 37 KEQNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETR-TGMEVALCKECIEWAKEERRTF 115 (374)
Q Consensus 37 ~e~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~-~~~~~~l~~e~i~~~~~~~r~~ 115 (374)
...+...++.++...|++++..+.+......-+....+... ...++... +. .+.-+..+..+|+-..++-..|
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~--~g~~l~~~----g~d~~eAl~~~~~al~l~P~~~~a~ 169 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHF--RRVLLKSL----QKDLHEEMNYITAIIEEQPKNYQVW 169 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHH--HHHHHHHT----TCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHH--HHHHHHHc----ccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 34667788999999999999988888777665554332211 12222222 21 3444666666665432222333
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCCh
Q psy4083 116 LRQSLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPP 195 (374)
Q Consensus 116 lr~~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~ 195 (374)
. .++.++...|++++|+..+.+.+. .+.+ -.+.+.....++...|++..+..++.++.... |
T Consensus 170 ~------~~g~~~~~~g~~~eAl~~~~kal~----ldP~--~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~------P 231 (382)
T 2h6f_A 170 H------HRRVLVEWLRDPSQELEFIADILN----QDAK--NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED------V 231 (382)
T ss_dssp H------HHHHHHHHHTCCTTHHHHHHHHHH----HCTT--CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC------T
T ss_pred H------HHHHHHHHccCHHHHHHHHHHHHH----hCcc--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC------C
Confidence 2 356688888999999998888874 2222 23566677778888999999999999987663 2
Q ss_pred hhhHHHHHHHHHHhhcc-cccHHHH-----HHHHHHhcc
Q psy4083 196 KMQAALDLQSGILHAAD-EQDFKTA-----FSYFYEAFE 228 (374)
Q Consensus 196 ~~~~~i~~~~G~~~~~~-~rdy~~A-----~~~F~eaf~ 228 (374)
.- ......-|.++. . .+.+..| ..+|-.+++
T Consensus 232 ~~-~~a~~~lg~~l~-~l~~~~~eA~~~~el~~~~~Al~ 268 (382)
T 2h6f_A 232 RN-NSVWNQRYFVIS-NTTGYNDRAVLEREVQYTLEMIK 268 (382)
T ss_dssp TC-HHHHHHHHHHHH-HTTCSCSHHHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHH-HhcCcchHHHHHHHHHHHHHHHH
Confidence 21 122233455555 4 4444666 355655544
No 168
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=92.35 E-value=0.38 Score=35.85 Aligned_cols=55 Identities=9% Similarity=0.130 Sum_probs=44.7
Q ss_pred HHHHHHhhcccc---ceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEE
Q psy4083 284 EQNLCRIIEPYS---RVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIV 339 (374)
Q Consensus 284 e~~l~~~~~pYs---~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~ 339 (374)
++.|+.++..-. +++...||+.||+|...|.+.|.+|..+|.|...-+.+ |.=..
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~~~-~~W~i 73 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTP-PLWKI 73 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECSSS-CEEEE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCC-CceEe
Confidence 455667777777 99999999999999999999999999999997765444 44333
No 169
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=92.14 E-value=3.2 Score=41.32 Aligned_cols=87 Identities=16% Similarity=0.227 Sum_probs=51.5
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhh-------hhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHH
Q psy4083 43 QLGEKYKQEGKAIELAELIKKTRPF-------LSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTF 115 (374)
Q Consensus 43 ~l~~~~~~~~~~~~l~~~l~~l~~~-------~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~ 115 (374)
.++.+|.+.|.|+++..++..-... +.-++-.++.---.++++.+..-++. +++ -..|+.|. +-.+|
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~----ini-~k~~~~~~-~~~~w 285 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSR----VNI-PKVLRAAE-QAHLW 285 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT----SCH-HHHHHHHH-TTTCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH----hcC-cHHHHHHH-HHHHH
Confidence 3578999999999998888776432 23333333332233344433222211 111 25566666 44777
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHH
Q psy4083 116 LRQSLEARLIALYFDTGEYTEALKLS 141 (374)
Q Consensus 116 lr~~l~~kLa~~~~~~g~~~~Al~~~ 141 (374)
.- ++-+|.+.++|++|...+
T Consensus 286 ~e------~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 286 AE------LVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HH------HHHHHHHTTCHHHHHHHH
T ss_pred HH------HHHHHHhhchHHHHHHHH
Confidence 63 455899999999996544
No 170
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=91.98 E-value=1.9 Score=44.72 Aligned_cols=128 Identities=10% Similarity=-0.051 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHHH
Q psy4083 40 NILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQS 119 (374)
Q Consensus 40 ~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~~ 119 (374)
+.+.++..+.+.|++++..+.+......-+.-..+...... +.-.. +..+.-++.+..+++-..++-..|
T Consensus 435 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~--~~~~~----g~~~~A~~~~~~al~l~P~~~~~~---- 504 (681)
T 2pzi_A 435 LPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAV--AELLT----GDYDSATKHFTEVLDTFPGELAPK---- 504 (681)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHH--HHHHH----TCHHHHHHHHHHHHHHSTTCSHHH----
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHH--HHHHc----CCHHHHHHHHHHHHHhCCCChHHH----
Confidence 34667888888888888877777666554444322221111 11111 112333444444443322121222
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy4083 120 LEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSART 186 (374)
Q Consensus 120 l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~ 186 (374)
. .+|.+|...|++++ ++.+.+.++ . +. .-.+.+.....++...|++..|...+.+|..
T Consensus 505 ~--~lg~~~~~~g~~~~-~~~~~~al~----~-~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 562 (681)
T 2pzi_A 505 L--ALAATAELAGNTDE-HKFYQTVWS----T-ND-GVISAAFGLARARSAEGDRVGAVRTLDEVPP 562 (681)
T ss_dssp H--HHHHHHHHHTCCCT-TCHHHHHHH----H-CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHTSCT
T ss_pred H--HHHHHHHHcCChHH-HHHHHHHHH----h-CC-chHHHHHHHHHHHHHcCCHHHHHHHHHhhcc
Confidence 2 36777777888877 777766653 1 11 1124566667777788888888877776643
No 171
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=91.98 E-value=0.44 Score=47.06 Aligned_cols=103 Identities=14% Similarity=0.079 Sum_probs=76.3
Q ss_pred HHHhccCHHHHHHHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccC--CChhhhHHHH
Q psy4083 127 LYFDTGEYTEALKLSSSLLKELKKL--DDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIY--CPPKMQAALD 202 (374)
Q Consensus 127 ~~~~~g~~~~Al~~~~~ll~el~~~--dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~--~~~~~~~~i~ 202 (374)
-+...|+|++|++.+.+.+.-..+. .+....+..+-.-..+|..+|+|.+|..++.++..+....+ .||.+-..+.
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3556799999998887776432222 23556788888889999999999999999999877654444 4677655554
Q ss_pred HHHHHHhhcccccHHHHHHHHHHhccCcC
Q psy4083 203 LQSGILHAADEQDFKTAFSYFYEAFEGFS 231 (374)
Q Consensus 203 ~~~G~~~~~~~rdy~~A~~~F~eaf~~f~ 231 (374)
.+ |.++. ..|+|.+|..+|-.|++.+.
T Consensus 376 nL-a~~~~-~~g~~~eA~~~~~~Al~i~~ 402 (429)
T 3qwp_A 376 KV-GKLQL-HQGMFPQAMKNLRLAFDIMR 402 (429)
T ss_dssp HH-HHHHH-HTTCHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHH-hcCCHHHHHHHHHHHHHHHH
Confidence 44 55577 89999999999988865543
No 172
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=91.93 E-value=0.67 Score=34.98 Aligned_cols=60 Identities=18% Similarity=0.174 Sum_probs=47.8
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTA 188 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~ 188 (374)
.+|..|...|++++|++.+.++++ .+.. -.+.+.....++...|++..|...+.++....
T Consensus 12 ~lg~~~~~~g~~~~A~~~~~~al~----~~p~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 12 ALAQEHLKHDNASRALALFEELVE----TDPD--YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH----HSTT--CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH----hCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 578899999999999988887764 1211 23467778889999999999999999987664
No 173
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=91.92 E-value=0.39 Score=45.34 Aligned_cols=149 Identities=15% Similarity=0.187 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHH
Q psy4083 39 QNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQ 118 (374)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~ 118 (374)
.....++..+++.|+|++....+.......+... . +. . .. -..+.+.... ...
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~----------~---~~---~-~~----~~~~~~~~l~------~~~ 232 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF----------M---FQ---L-YG----KYQDMALAVK------NPC 232 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH----------H---HT---C-CH----HHHHHHHHHH------THH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch----------h---hh---h-cc----cHHHHHHHHH------HHH
Confidence 3466779999999999998777776555443321 0 00 0 00 0111111111 112
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhh
Q psy4083 119 SLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQ 198 (374)
Q Consensus 119 ~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~ 198 (374)
.. .+|..|...|+|++|+..+.+.+.. +. .-...+.....++...+++..|...+.++..... .++...
T Consensus 233 ~~--nla~~~~~~g~~~~A~~~~~~al~~----~p--~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p---~~~~a~ 301 (338)
T 2if4_A 233 HL--NIAACLIKLKRYDEAIGHCNIVLTE----EE--KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP---DDKAIR 301 (338)
T ss_dssp HH--HHHHHHHTTTCCHHHHHHHHHHHHH----CT--TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------
T ss_pred HH--HHHHHHHHcCCHHHHHHHHHHHHHh----CC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---CCHHHH
Confidence 22 5788999999999999988887741 22 1245677888899999999999999999866531 223332
Q ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHhccC
Q psy4083 199 AALDLQSGILHAADEQDFKTAFSYFYEAFEG 229 (374)
Q Consensus 199 ~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~ 229 (374)
..+. .+... ..+.+..|...|-.+|..
T Consensus 302 ~~L~---~l~~~-~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 302 RELR---ALAEQ-EKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp -------------------------------
T ss_pred HHHH---HHHHH-HHHHHHHHHHHHHHhhCC
Confidence 2222 22123 445555666666555543
No 174
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=91.92 E-value=3.6 Score=34.94 Aligned_cols=103 Identities=11% Similarity=0.097 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHH-------HHHHHHHHHHHhhccccchhhhHHHHHHHHHH------
Q psy4083 41 ILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAK-------AAKLVRSLVDFFLDLETRTGMEVALCKECIEW------ 107 (374)
Q Consensus 41 ~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~-------~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~------ 107 (374)
+...+..+++.|+|++..+.+..-..+-+..+.+. -+-.-.+.=..+.+. +..+.-+.-+..+|+-
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~L-gr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGL-RSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhhhcccc
Confidence 56779999999999999998888887776632210 000111110111111 1123334445555553
Q ss_pred -HHHhhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q psy4083 108 -AKEERRTFLRQSLEARLIALYFDTGEYTEALKLSSSLLK 146 (374)
Q Consensus 108 -~~~~~r~~lr~~l~~kLa~~~~~~g~~~~Al~~~~~ll~ 146 (374)
-.+....|++... ++|..+...|++++|++.+.+.+.
T Consensus 93 ~~pd~~~A~~~~~~--~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 93 LNQDEGKLWISAVY--SRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TTSTHHHHHHHHHH--HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHH--hHHHHHHHCCCHHHHHHHHHHHHh
Confidence 2223356655546 688899999999999999988874
No 175
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=91.78 E-value=3.3 Score=41.31 Aligned_cols=132 Identities=14% Similarity=-0.009 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHH
Q psy4083 39 QNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQ 118 (374)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~ 118 (374)
.+.+.++..+...|++++..+.+.......+..+.... .+-.+.-.. +..+.-++.+.++++...++.. .
T Consensus 24 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--~lg~~~~~~----g~~~~A~~~~~~al~~~p~~~~----~ 93 (568)
T 2vsy_A 24 VAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA--RLGRVRWTQ----QRHAEAAVLLQQASDAAPEHPG----I 93 (568)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHH--HHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHH----H
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--HHHHHHHHC----CCHHHHHHHHHHHHhcCCCCHH----H
Confidence 45677899999999999998888887776554422211 111111111 2234445555555543322212 2
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHhhc
Q psy4083 119 SLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHAL---SNLSTSRASLTSARTTA 188 (374)
Q Consensus 119 ~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~---~n~~~a~~~~~~a~~~~ 188 (374)
.. .+|.+|...|++++|++.+.+.++. +.. -.+.+.....++... +++..+...+.++....
T Consensus 94 ~~--~la~~~~~~g~~~~A~~~~~~al~~----~p~--~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 94 AL--WLGHALEDAGQAEAAAAAYTRAHQL----LPE--EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HH--HHHHHHHHTTCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HH--HHHHHHHHcCCHHHHHHHHHHHHHh----CCC--CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 22 5788999999999998888777632 211 135666777888889 99999999999987654
No 176
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=91.69 E-value=6.1 Score=35.85 Aligned_cols=135 Identities=10% Similarity=-0.023 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHHH
Q psy4083 40 NILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQS 119 (374)
Q Consensus 40 ~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~~ 119 (374)
+...++.++.+.|++++..+.+......-+.-.....+. ..++.. . .+..+.-...+...++....+...|
T Consensus 136 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~---a~~~~~-~-~~~~~~A~~~~~~al~~~p~~~~~~---- 206 (308)
T 2ond_A 136 VYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA---ALMEYY-C-SKDKSVAFKIFELGLKKYGDIPEYV---- 206 (308)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHH---HHHHHH-T-SCCHHHHHHHHHHHHHHHTTCHHHH----
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHH---HHHHHH-H-cCCHHHHHHHHHHHHHhCCCcHHHH----
Confidence 556678888899999998888777765543322222211 111111 0 1223444566666666543333444
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy4083 120 LEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTT 187 (374)
Q Consensus 120 l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~ 187 (374)
+ .++.++...|++++|..++.+.+... ..++....+++..-+++....|+...+..++.++...
T Consensus 207 ~--~~~~~~~~~g~~~~A~~~~~~al~~~--~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 207 L--AYIDYLSHLNEDNNTRVLFERVLTSG--SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp H--HHHHHHHTTCCHHHHHHHHHHHHHSS--SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHCCCHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3 57888999999999988888776310 0133334567777788888999999999999998765
No 177
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=91.56 E-value=0.7 Score=33.07 Aligned_cols=59 Identities=19% Similarity=0.237 Sum_probs=46.8
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTT 187 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~ 187 (374)
.+|..+...|++++|++.+.+.+.. +.. ..+.+.....++...+++..+..++.++...
T Consensus 14 ~la~~~~~~~~~~~A~~~~~~a~~~----~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 14 NLGNAYYKQGDYDEAIEYYQKALEL----DPN--NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhc----CCC--CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4788999999999999888877642 111 1356677788899999999999999998765
No 178
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=91.52 E-value=1.1 Score=44.91 Aligned_cols=92 Identities=15% Similarity=0.051 Sum_probs=53.8
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHH
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALD 202 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~ 202 (374)
.+|..|...|++++|++.+.+.++ .+. ...+.+.....++...+++..|..++.++..... .+ ....
T Consensus 28 ~lg~~~~~~g~~~~A~~~~~~al~----~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~----~~~~ 94 (568)
T 2vsy_A 28 MLADAELGMGDTTAGEMAVQRGLA----LHP--GHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAP---EH----PGIA 94 (568)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHT----TST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TC----HHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH----hCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC---CC----HHHH
Confidence 356667777777777666655542 111 1134555566667777777777777777655421 11 2233
Q ss_pred HHHHHHhhcccccHHHHHHHHHHhcc
Q psy4083 203 LQSGILHAADEQDFKTAFSYFYEAFE 228 (374)
Q Consensus 203 ~~~G~~~~~~~rdy~~A~~~F~eaf~ 228 (374)
..-|.++. ..++|.+|...|-.+.+
T Consensus 95 ~~la~~~~-~~g~~~~A~~~~~~al~ 119 (568)
T 2vsy_A 95 LWLGHALE-DAGQAEAAAAAYTRAHQ 119 (568)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHH
Confidence 34456666 67777777777766654
No 179
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=91.26 E-value=0.28 Score=36.72 Aligned_cols=45 Identities=18% Similarity=0.124 Sum_probs=38.7
Q ss_pred HHHHHHHhhccc------cceeHHHHHhHhCCChHHHHHHHHHHhhcCccc
Q psy4083 283 LEQNLCRIIEPY------SRVEVGFIAKSIKLDELAVEKKLSQMILDKKFH 327 (374)
Q Consensus 283 re~~l~~~~~pY------s~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~ 327 (374)
|.+.|+.+++.+ -.+++..||+.||+|..-|.+.|..|-..|.|.
T Consensus 5 r~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~ 55 (77)
T 2jt1_A 5 IVTKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVLE 55 (77)
T ss_dssp HHHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEE
Confidence 445566666666 679999999999999999999999999999884
No 180
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=90.99 E-value=1.3 Score=32.41 Aligned_cols=61 Identities=8% Similarity=0.101 Sum_probs=46.2
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHhh
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHAL-SNLSTSRASLTSARTT 187 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~-~n~~~a~~~~~~a~~~ 187 (374)
.+|.++...|++++|++.+.+.++ .+......+++.....++... +++..+..++..+...
T Consensus 45 ~~a~~~~~~~~~~~A~~~~~~a~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 45 MKGKALYNLERYEEAVDCYNYVIN----VIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH----TSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH----hCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 478889999999999888777663 222212356777888889999 9999999999887654
No 181
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=90.91 E-value=4 Score=31.10 Aligned_cols=60 Identities=13% Similarity=0.092 Sum_probs=48.1
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTA 188 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~ 188 (374)
.||.+|...|+|++|++.+.+.++. +... .+++..-..++...|++..+...+.++....
T Consensus 32 ~lg~~~~~~~~~~~A~~~~~~al~~----~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 32 GLGSTFRTLGEYRKAEAVLANGVKQ----FPNH--QALRVFYAMVLYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----CTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh----CCCc--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 5899999999999999888877642 2211 5677777888999999999999999987653
No 182
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=90.71 E-value=3.2 Score=34.22 Aligned_cols=131 Identities=14% Similarity=0.033 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHH
Q psy4083 39 QNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQ 118 (374)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~ 118 (374)
.+.+.++.++...|++++..+.+......-+ -+. .... ...+........ ...+..+...++...++ ...
T Consensus 41 ~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~--~~~~-~~~~~~~~~~~~--~~a~~~~~~al~~~P~~----~~~ 110 (176)
T 2r5s_A 41 DVKLAKADCLLETKQFELAQELLATIPLEYQ-DNS--YKSL-IAKLELHQQAAE--SPELKRLEQELAANPDN----FEL 110 (176)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHH--HHHH-HHHHHHHHHHTS--CHHHHHHHHHHHHSTTC----HHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChH--HHHH-HHHHHHHhhccc--chHHHHHHHHHHhCCCC----HHH
Confidence 3456678888888888887666655544333 111 1111 111111110000 11134444444322211 122
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy4083 119 SLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSAR 185 (374)
Q Consensus 119 ~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~ 185 (374)
.. .+|.++...|++++|+..+.++++ .+....-.+.+..-..++...|+...+...|.++.
T Consensus 111 ~~--~la~~~~~~g~~~~A~~~~~~~l~----~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 111 AC--ELAVQYNQVGRDEEALELLWNILK----VNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HH--HHHHHHHHTTCHHHHHHHHHHHHT----TCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HH--HHHHHHHHcccHHHHHHHHHHHHH----hCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 23 478888999999999877776653 12111112344445677788888888887777654
No 183
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=90.64 E-value=1.7 Score=39.14 Aligned_cols=155 Identities=12% Similarity=0.135 Sum_probs=93.5
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhc--cccCCC---h-h--hhHHHHHHHHHHhhcccccHHHHHHHHHHhccC-cCc--c
Q psy4083 165 SKTYHALSNLSTSRASLTSARTTA--NSIYCP---P-K--MQAALDLQSGILHAADEQDFKTAFSYFYEAFEG-FST--V 233 (374)
Q Consensus 165 i~l~~~~~n~~~a~~~~~~a~~~~--~~~~~~---~-~--~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~-f~~--~ 233 (374)
.+-.+..+|+.++...+.+.+..- ..+.++ + . +--.+.+.++++.+ ..+|.. ++.......+. |.. .
T Consensus 14 L~~~~~~~d~~~~~~lL~~lk~~L~~~~~~~p~~~~~~~~~ar~vyE~~a~~al-~~~D~~-~F~~~~~qLk~~Y~~~~~ 91 (229)
T 4b0z_A 14 LADLYDRKDWNACKKELLKLKVELAKQNLFVPTSDKEKASFARNVFEYGVLVSI-QTCDIE-SFARYASQVIPFYHDSLV 91 (229)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCSSCCSCHHHHHHHHHHHHHHHHHHH-HTTCHH-HHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHH-HcCCHH-HHHHHHHHHHHHHHccCC
Confidence 344457788888888887754210 011111 1 1 22377889999888 666643 33333333222 222 3
Q ss_pred cchhHHHHHHHHHHHHHhcCCchhHHHHHH------HHhcChHHHhhHHHHHHHHHHHHHHHhhccccceeHHHHHhHhC
Q psy4083 234 DHNHAMMSLKYMLLSKIMLNTPEDVNQILS------ELEDDTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIK 307 (374)
Q Consensus 234 ~~~~~~~~LkY~vL~~iL~~~~~~v~~ll~------~l~~D~~l~~h~~~L~~~ire~~l~~~~~pYs~I~l~~lA~~l~ 307 (374)
+++....++.|-+|..++++...+....+. .+..||+++ |.-.+.+.+++.|+.++++-|....-...+-...
T Consensus 92 ~s~~~~e~~~~~LL~lL~~~~~~ef~~~le~l~~~~~~~~~~~I~-~al~l~~al~~GnY~kff~l~~~~p~~~~~~~~~ 170 (229)
T 4b0z_A 92 PSSRMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVE-WVISLEQNVMEGAFDKVASMIRSCNFPEFSYFMK 170 (229)
T ss_dssp CCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHCSCTTHHHHCHHHH-HHHHHHHHHHTTCHHHHHHHHHTCCCGGGHHHHH
T ss_pred CCccHHHHHHHHHHHHHHcCCchHHHHHHHhcChHHHhhcCHHHH-HHHHHHHHHHcCCHHHHHHHHhcCccchHHHHHH
Confidence 446677889999999998887555444343 356788886 5667899999999999999887765333222222
Q ss_pred CChHHHHHHHHHHhh
Q psy4083 308 LDELAVEKKLSQMIL 322 (374)
Q Consensus 308 ls~~~vE~~L~~lI~ 322 (374)
+=.+.+...+..+|.
T Consensus 171 ~l~~~vR~~~l~~i~ 185 (229)
T 4b0z_A 171 IVMSMVRNEIATCAE 185 (229)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 223445555555554
No 184
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=90.49 E-value=6.2 Score=44.90 Aligned_cols=146 Identities=16% Similarity=0.150 Sum_probs=82.8
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy4083 44 LGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQSLEAR 123 (374)
Q Consensus 44 l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~~l~~k 123 (374)
+|.++.+.|.+++..+.++... .. .+.++..++.+. +.+.-++... -+ ++..+|. .
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~----~~-----~~A~~VLie~i~----nldrAiE~Ae----rv-n~p~vWs------q 1110 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD----VN-----TSAVQVLIEHIG----NLDRAYEFAE----RC-NEPAVWS------Q 1110 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC----CH-----HHHHHHHHHHHh----hHHHHHHHHH----hc-CCHHHHH------H
Confidence 5777888888888766666532 11 122222233221 1222222221 11 1235554 5
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChh-------
Q psy4083 124 LIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPK------- 196 (374)
Q Consensus 124 La~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~------- 196 (374)
+|..+++.|++++|+++|.+ .++.+..++ .+..+...|++..+-.+|..|++.......+..
T Consensus 1111 LAKAql~~G~~kEAIdsYiK-------AdD~say~e----Va~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAK 1179 (1630)
T 1xi4_A 1111 LAKAQLQKGMVKEAIDSYIK-------ADDPSSYME----VVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAK 1179 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHh-------cCChHHHHH----HHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHh
Confidence 78899999999999887733 355544333 567788888888888888887765411100110
Q ss_pred ------hh--------HHHHHHHHHHhhcccccHHHHHHHHHHh
Q psy4083 197 ------MQ--------AALDLQSGILHAADEQDFKTAFSYFYEA 226 (374)
Q Consensus 197 ------~~--------~~i~~~~G~~~~~~~rdy~~A~~~F~ea 226 (374)
+. +.+ ..-|..+. .+++|..|..+|-.+
T Consensus 1180 l~rleele~fI~~~n~ad~-~~iGd~le-~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A 1180 TNRLAELEEFINGPNNAHI-QQVGDRCY-DEKMYDAAKLLYNNV 1221 (1630)
T ss_pred hcCHHHHHHHHhCCCHHHH-HHHHHHHH-hcCCHHHHHHHHHhh
Confidence 00 111 23566667 888888888777655
No 185
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=90.45 E-value=2.6 Score=43.73 Aligned_cols=153 Identities=12% Similarity=0.013 Sum_probs=92.9
Q ss_pred HHhCCHHHHHHHHHHHH--------hhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHHHH
Q psy4083 49 KQEGKAIELAELIKKTR--------PFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQSL 120 (374)
Q Consensus 49 ~~~~~~~~l~~~l~~l~--------~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~~l 120 (374)
...|++++..+.+.... ...+.-....... ..-+.. .+..+.-++.+..+++....+...| .
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~----a~~~~~--~g~~~~A~~~~~~al~~~p~~~~a~----~ 471 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLME----VRALLD--LGDVAKATRKLDDLAERVGWRWRLV----W 471 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHH----HHHHHH--HTCHHHHHHHHHHHHHHHCCCHHHH----H
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHH----HHHHHh--cCCHHHHHHHHHHHhccCcchHHHH----H
Confidence 66788888877777665 2222221211111 111111 1223334555555554332222222 2
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHH
Q psy4083 121 EARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAA 200 (374)
Q Consensus 121 ~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~ 200 (374)
.+|.+|...|++++|++.+.+.++- +... .+.+.....++...|++.. ...|.+|.... |.- ..
T Consensus 472 --~lg~~~~~~g~~~~A~~~~~~al~l----~P~~--~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~------P~~-~~ 535 (681)
T 2pzi_A 472 --YRAVAELLTGDYDSATKHFTEVLDT----FPGE--LAPKLALAATAELAGNTDE-HKFYQTVWSTN------DGV-IS 535 (681)
T ss_dssp --HHHHHHHHHTCHHHHHHHHHHHHHH----STTC--SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC------TTC-HH
T ss_pred --HHHHHHHHcCCHHHHHHHHHHHHHh----CCCC--hHHHHHHHHHHHHcCChHH-HHHHHHHHHhC------Cch-HH
Confidence 4788899999999999888877641 2111 3455667778889999999 99999887652 221 12
Q ss_pred HHHHHHHHhhcccccHHHHHHHHHHhcc
Q psy4083 201 LDLQSGILHAADEQDFKTAFSYFYEAFE 228 (374)
Q Consensus 201 i~~~~G~~~~~~~rdy~~A~~~F~eaf~ 228 (374)
....-|.++. ..++|.+|...|-.+.+
T Consensus 536 a~~~lg~~~~-~~g~~~~A~~~~~~al~ 562 (681)
T 2pzi_A 536 AAFGLARARS-AEGDRVGAVRTLDEVPP 562 (681)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHTSCT
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHhhcc
Confidence 3455677888 89999999999877754
No 186
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=90.18 E-value=6.6 Score=31.95 Aligned_cols=58 Identities=12% Similarity=0.182 Sum_probs=35.1
Q ss_pred HHHH-HHhccCH--HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy4083 124 LIAL-YFDTGEY--TEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTT 187 (374)
Q Consensus 124 La~~-~~~~g~~--~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~ 187 (374)
+|.+ +...|++ ++|++.+.+.+.. +.. -.+.+.....++...|++..|..++.++...
T Consensus 84 la~~l~~~~~~~~~~~A~~~~~~al~~----~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 84 LATVLYYQASQHMTAQTRAMIDKALAL----DSN--EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHh----CCC--cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 4555 5566776 7776666555531 111 1244555666777777777777777776655
No 187
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=89.93 E-value=0.5 Score=47.02 Aligned_cols=91 Identities=14% Similarity=0.084 Sum_probs=46.5
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHHH
Q psy4083 124 LIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALDL 203 (374)
Q Consensus 124 La~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~~ 203 (374)
+|..+++.|+|++|++.+.+.++. ++ ...+.+.....++...+++..|..++.+|.... |.. .....
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~-----~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~------p~~-~~~~~ 78 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL-----NP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD------KKY-IKGYY 78 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH-----CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC------TTC-HHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh-----CC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------CCC-HHHHH
Confidence 344555566666666655555431 11 113445555556666666666666666655431 111 12223
Q ss_pred HHHHHhhcccccHHHHHHHHHHhcc
Q psy4083 204 QSGILHAADEQDFKTAFSYFYEAFE 228 (374)
Q Consensus 204 ~~G~~~~~~~rdy~~A~~~F~eaf~ 228 (374)
.-|.++. ..++|.+|...|-.+.+
T Consensus 79 ~lg~~~~-~~g~~~eA~~~~~~al~ 102 (477)
T 1wao_1 79 RRAASNM-ALGKFRAALRDYETVVK 102 (477)
T ss_dssp HHHHHHH-HHTCHHHHHHHHHHHHH
T ss_pred HHHHHHH-HcCCHHHHHHHHHHHHH
Confidence 3355555 56666666666665544
No 188
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=89.70 E-value=0.43 Score=36.02 Aligned_cols=57 Identities=9% Similarity=0.100 Sum_probs=44.1
Q ss_pred HHHHHHhhcccc---ceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEEec
Q psy4083 284 EQNLCRIIEPYS---RVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFE 341 (374)
Q Consensus 284 e~~l~~~~~pYs---~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~~~ 341 (374)
++.|+.++.... +++...||+.||+|...|.+.|.+|-.+|.|.-. +...|.=....
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~-g~~~~~W~i~~ 71 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKE-AGTPPLWKIAV 71 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-SSSSCEEEEC-
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec-CCCCCeeEEeC
Confidence 445667777777 9999999999999999999999999999998543 33335555433
No 189
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=89.64 E-value=7.8 Score=44.14 Aligned_cols=178 Identities=13% Similarity=0.168 Sum_probs=87.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh-------hhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhH
Q psy4083 41 ILQLGEKYKQEGKAIELAELIKKTRP-------FLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERR 113 (374)
Q Consensus 41 ~~~l~~~~~~~~~~~~l~~~l~~l~~-------~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r 113 (374)
+-.++..|.+.|.|+++..++..-.. ++..++-.++.---.++++.+..-+ .++++ -..|++|. +-.
T Consensus 1283 Leeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~----~rini-~k~~r~~e-~~~ 1356 (1630)
T 1xi4_A 1283 LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW----SRVNI-PKVLRAAE-QAH 1356 (1630)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH----Hhccc-chHhHHHH-HHH
Confidence 34568889999999999888866532 2233322222222223333332111 11111 14455665 446
Q ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH------hccchhHHHHHHHHHHHHHHhC---------------
Q psy4083 114 TFLRQSLEARLIALYFDTGEYTEALKLSSSLLKELKK------LDDKNLLVEVLLLESKTYHALS--------------- 172 (374)
Q Consensus 114 ~~lr~~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~------~dd~~~~lev~l~ei~l~~~~~--------------- 172 (374)
+|... .-+|.+.|+|++|+..+.+=..+.=+ .-.+..-.|++-.-+..|+..+
T Consensus 1357 lW~el------v~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rl 1430 (1630)
T 1xi4_A 1357 LWAEL------VFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRL 1430 (1630)
T ss_pred HHHHH------HHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcC
Confidence 77654 44899999999997543322111000 0123334555555555555444
Q ss_pred CHHHHHHHHHHHHhhccccCCChh-------hhHHHHHHHHHHhhcccccHHHHHHHHHHhccCcCcccc
Q psy4083 173 NLSTSRASLTSARTTANSIYCPPK-------MQAALDLQSGILHAADEQDFKTAFSYFYEAFEGFSTVDH 235 (374)
Q Consensus 173 n~~~a~~~~~~a~~~~~~~~~~~~-------~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~f~~~~~ 235 (374)
|.+++-..+.++..++. .-|- -...+-+....+.. .+.||+.= ..-+|++.+||..+.
T Consensus 1431 D~~R~V~l~~~~~~l~l---ik~yl~~vq~~n~~~Vneal~el~i-eeed~~~L-r~si~~~~nfd~~~L 1495 (1630)
T 1xi4_A 1431 DHTRAVNYFSKVKQLPL---VKPYLRSVQNHNNKSVNESLNNLFI-TEEDYQAL-RTSIDAYDNFDNISL 1495 (1630)
T ss_pred ChHHHHHHHHHcCChHH---hHHHHHHHHHhcchhhhHHHHHHhc-CccchHHH-HHHHhhccCcCHHHH
Confidence 44444444432211110 0011 11134444445567 88998752 344666777776533
No 190
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=89.61 E-value=1.8 Score=31.76 Aligned_cols=59 Identities=17% Similarity=0.240 Sum_probs=47.0
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVE-VLLLESKTYHALSNLSTSRASLTSARTT 187 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~le-v~l~ei~l~~~~~n~~~a~~~~~~a~~~ 187 (374)
.+|..+...|++++|++.+.+++.. ++.. .+ .+.....++...+++..+...+.++...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQT-----EPVG-KDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-----CSST-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH-----CCCc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 5788899999999999888877641 2212 24 6777888999999999999999998766
No 191
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=89.59 E-value=7.9 Score=38.08 Aligned_cols=168 Identities=12% Similarity=0.115 Sum_probs=91.4
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHHHHH
Q psy4083 42 LQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQSLE 121 (374)
Q Consensus 42 ~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~~l~ 121 (374)
..++.++.+.|++++..+.+......-+.-+ +.+-.......... +..+.-.+++..+++.....-..|+.
T Consensus 325 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~~~~~-~~~~~A~~~~~~Al~~~~~~~~~~~~---- 395 (530)
T 2ooe_A 325 FAYADYEESRMKYEKVHSIYNRLLAIEDIDP----TLVYIQYMKFARRA-EGIKSGRMIFKKAREDARTRHHVYVT---- 395 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSSSSCH----HHHHHHHHHHHHHH-HHHHHHHHHHHHHHTCTTCCTHHHHH----
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCccccCc----hHHHHHHHHHHHHh-cCHHHHHHHHHHHHhccCCchHHHHH----
Confidence 3567777888888888777777665433211 11111111111000 11122233333333321111123331
Q ss_pred HHHHHH-HHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHH
Q psy4083 122 ARLIAL-YFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAA 200 (374)
Q Consensus 122 ~kLa~~-~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~ 200 (374)
.+.+ +...|++++|.+.+.+.++.. .. -.++++.-+.+....|+..+++.++.+|.... ..+|.-...
T Consensus 396 --~a~~~~~~~~~~~~A~~~~e~al~~~----p~--~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~---~~~~~~~~~ 464 (530)
T 2ooe_A 396 --AALMEYYCSKDKSVAFKIFELGLKKY----GD--IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG---SLPPEKSGE 464 (530)
T ss_dssp --HHHHHHHHTCCHHHHHHHHHHHHHHH----TT--CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC---CSCGGGCHH
T ss_pred --HHHHHHHHcCChhHHHHHHHHHHHHC----CC--CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc---CCCHHHHHH
Confidence 1212 335799999988888777432 11 13566666777788899999999999987652 135554444
Q ss_pred HHHHHHHHhhcccccHHHHHHHHHHhccCc
Q psy4083 201 LDLQSGILHAADEQDFKTAFSYFYEAFEGF 230 (374)
Q Consensus 201 i~~~~G~~~~~~~rdy~~A~~~F~eaf~~f 230 (374)
+....+.+.. ..|+..++...+-.+.+.|
T Consensus 465 lw~~~~~~e~-~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 465 IWARFLAFES-NIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHHHH-HSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHHC
Confidence 5544455555 5688888777766665544
No 192
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=89.26 E-value=4.2 Score=36.83 Aligned_cols=35 Identities=17% Similarity=0.103 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhh
Q psy4083 38 EQNILQLGEKYKQEGKAIELAELIKKTRPFLSQIS 72 (374)
Q Consensus 38 e~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~ 72 (374)
.+..+.++..+...|++++..+.+......-+.-+
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~ 151 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNG 151 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcch
Confidence 35677888899999999998888887766655443
No 193
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=89.09 E-value=1.8 Score=34.81 Aligned_cols=73 Identities=10% Similarity=0.149 Sum_probs=57.2
Q ss_pred eeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCC--CCeEEEecCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q psy4083 297 VEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQG--EKVLIVFEGAEIDKTYEKALETITSMGKVIDTLYQK 369 (374)
Q Consensus 297 I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~--~giv~~~~~~~~~~~y~~~~~~i~~l~~~vd~l~~~ 369 (374)
++...||+.+|+|..-|-+.|..|...|-+.-.-+.. .|....+.+.+....++...+.+.+|...+...++.
T Consensus 43 ~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~~~~~d~~~~~~~y~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 117 (123)
T 3r0a_A 43 IDTDALSKSLKLDVSTVQRSVKKLHEKEILQRSQQNLDGGGYVYIYKIYSKNQIRNIIQKIVQSWADRLGQELKE 117 (123)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeeCCccCCCcceEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999997643332 344444555566777888888888888888766543
No 194
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=88.79 E-value=12 Score=33.53 Aligned_cols=96 Identities=11% Similarity=0.056 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHHH
Q psy4083 40 NILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQS 119 (374)
Q Consensus 40 ~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~~ 119 (374)
.++.++..++..|+|++..+.+.......+..+...... -.+.... +..+.-+..+..+++-. .......
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l--a~~~~~~----~~~~~A~~~~~~al~~~----p~~~~~~ 75 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNR--ALCYLKM----QQPEQALADCRRALELD----GQSVKAH 75 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHH--HHHHHHT----TCHHHHHHHHHHHTTSC----TTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHH--HHHHHHh----cCHHHHHHHHHHHHHhC----CCCHHHH
Confidence 456779999999999999888887777655442222111 1111111 21233333443333321 1122333
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHH
Q psy4083 120 LEARLIALYFDTGEYTEALKLSSSLLKE 147 (374)
Q Consensus 120 l~~kLa~~~~~~g~~~~Al~~~~~ll~e 147 (374)
. .+|..|...|++++|+..+.+.+.-
T Consensus 76 ~--~lg~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 76 F--FLGQCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp H--HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3 5788999999999999988877753
No 195
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=88.70 E-value=8.4 Score=34.76 Aligned_cols=90 Identities=12% Similarity=0.042 Sum_probs=44.9
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHH
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALD 202 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~ 202 (374)
.||.++.+.|++++|+..+.+++. .+. ... ...+.-...+...++...+...+.++.... |.- ....
T Consensus 156 ~la~~~~~~g~~~~A~~~l~~~~~----~~p-~~~-~~~~~~~~~l~~~~~~~~a~~~l~~al~~~------P~~-~~~~ 222 (287)
T 3qou_A 156 LLAETLIALNRSEDAEAVLXTIPL----QDQ-DTR-YQGLVAQIELLXQAADTPEIQQLQQQVAEN------PED-AALA 222 (287)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTSCG----GGC-SHH-HHHHHHHHHHHHHHTSCHHHHHHHHHHHHC------TTC-HHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCch----hhc-chH-HHHHHHHHHHHhhcccCccHHHHHHHHhcC------Ccc-HHHH
Confidence 467788888888888766655432 111 111 111111122334444444555555544331 111 1122
Q ss_pred HHHHHHhhcccccHHHHHHHHHHh
Q psy4083 203 LQSGILHAADEQDFKTAFSYFYEA 226 (374)
Q Consensus 203 ~~~G~~~~~~~rdy~~A~~~F~ea 226 (374)
..-|.+++ ..++|..|...|.++
T Consensus 223 ~~la~~l~-~~g~~~~A~~~l~~~ 245 (287)
T 3qou_A 223 TQLALQLH-QVGRNEEALELLFGH 245 (287)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred HHHHHHHH-HcccHHHHHHHHHHH
Confidence 33355556 667777777777666
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=88.59 E-value=2.1 Score=32.50 Aligned_cols=60 Identities=18% Similarity=0.175 Sum_probs=47.2
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTA 188 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~ 188 (374)
.+|.+|...|++++|++.+.+.+. .+.. -.+.+.....++...|++..+...+.++....
T Consensus 24 ~lg~~~~~~g~~~~A~~~~~~al~----~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 24 TLGKTYAEHEQFDAALPHLRAALD----FDPT--YSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH----HCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH----HCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 478899999999999988887764 1221 24566777888999999999999999987653
No 197
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=87.75 E-value=13 Score=34.89 Aligned_cols=156 Identities=13% Similarity=0.049 Sum_probs=90.1
Q ss_pred HHHHHHHHHh---h--HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcc----chhHHHHHHHHHHHHHHhC
Q psy4083 102 KECIEWAKEE---R--RTFLRQSLEARLIALYFDTGEYTEALKLSSSLLKELKKLDD----KNLLVEVLLLESKTYHALS 172 (374)
Q Consensus 102 ~e~i~~~~~~---~--r~~lr~~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd----~~~~lev~l~ei~l~~~~~ 172 (374)
.++++|+..- + ...+...+ .++.+++..|+.+.|.+.+ +.++..++ ...-+-+.+.+..+.+..|
T Consensus 117 eeAL~~l~~~i~~~~~~~~lea~~--l~vqi~L~~~r~d~A~k~l----~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g 190 (310)
T 3mv2_B 117 DKSLETCVEGIDNDEAEGTTELLL--LAIEVALLNNNVSTASTIF----DNYTNAIEDTVSGDNEMILNLAESYIKFATN 190 (310)
T ss_dssp HHHHHHHHHHHTSSCSTTHHHHHH--HHHHHHHHTTCHHHHHHHH----HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccCCCcCcHHHHH--HHHHHHHHCCCHHHHHHHH----HHHHhcCccccccchHHHHHHHHHHHHHHhC
Confidence 4666665421 0 13444444 5789999999999995544 44444443 1344557777887777777
Q ss_pred --CHHHHHHHHHHHHhhccccCCChhhhHHHHHHHHHHhhcccccHHHHHHHHHHhccCc---Ccc--cchhHHHHHHHH
Q psy4083 173 --NLSTSRASLTSARTTANSIYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEGF---STV--DHNHAMMSLKYM 245 (374)
Q Consensus 173 --n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~f---~~~--~~~~~~~~LkY~ 245 (374)
++..+-.+|...... ++++.....+.- .++ ..|+|.+|-..+-...+-| ... .+|..-++|..+
T Consensus 191 ~~~~q~A~~~f~El~~~----~p~~~~~~lLln----~~~-~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~ 261 (310)
T 3mv2_B 191 KETATSNFYYYEELSQT----FPTWKTQLGLLN----LHL-QQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQ 261 (310)
T ss_dssp CSTTTHHHHHHHHHHTT----SCSHHHHHHHHH----HHH-HHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHh----CCCcccHHHHHH----HHH-HcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHH
Confidence 888888888775322 233222222222 577 8899999998875333322 111 134455677777
Q ss_pred HHHHHhcCCchhHHHHHH----HHhcChHHHhh
Q psy4083 246 LLSKIMLNTPEDVNQILS----ELEDDTIVKAH 274 (374)
Q Consensus 246 vL~~iL~~~~~~v~~ll~----~l~~D~~l~~h 274 (374)
+.|..+.+. +..+++. .--.+|++..+
T Consensus 262 i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~ 292 (310)
T 3mv2_B 262 ITLALMQGL--DTEDLTNQLVKLDHEHAFIKHH 292 (310)
T ss_dssp HHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHhCh--HHHHHHHHHHHhCCCChHHHHH
Confidence 777777665 3233333 22345666543
No 198
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=87.59 E-value=3.8 Score=32.14 Aligned_cols=76 Identities=11% Similarity=0.088 Sum_probs=54.0
Q ss_pred cceeHHHHHhHh-CCChHHHHHHHHHHhhcCccceeecCCCCeEEEecCCcchHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4083 295 SRVEVGFIAKSI-KLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFEGAEIDKTYEKALETITSMGKVIDTLYQKA 370 (374)
Q Consensus 295 s~I~l~~lA~~l-~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~~~~~~~~~~y~~~~~~i~~l~~~vd~l~~~~ 370 (374)
..++...||+.+ |++..-+-..|.+|...|-|....|..++....+.-.+........+..+.+|......-..++
T Consensus 34 ~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~~G~~~~~~~~~l~~w~~~~~~~~~~~ 110 (112)
T 1z7u_A 34 GTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYALYDALSSLCHWGETFAQKKARL 110 (112)
T ss_dssp SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECHhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 568999999999 9999999999999999999998888776655444434334434344455566655544333433
No 199
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=87.26 E-value=4.2 Score=30.69 Aligned_cols=45 Identities=13% Similarity=0.155 Sum_probs=37.3
Q ss_pred HHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecC
Q psy4083 288 CRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQ 332 (374)
Q Consensus 288 ~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~ 332 (374)
+.++.....++...||+.+|++...|-+.|..|...|-+...-|.
T Consensus 26 l~~l~~~~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~~~ 70 (109)
T 1sfx_A 26 YSLLLERGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREIVE 70 (109)
T ss_dssp HHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred HHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEeec
Confidence 333433467999999999999999999999999999999875554
No 200
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=87.02 E-value=0.53 Score=42.56 Aligned_cols=56 Identities=13% Similarity=0.164 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHhhccccceeHHHHHhHhC-CChHHHHHHHHHHhhcCccce-eecCCCCeEEE
Q psy4083 276 GTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIK-LDELAVEKKLSQMILDKKFHG-ILDQGEKVLIV 339 (374)
Q Consensus 276 ~~L~~~ire~~l~~~~~pYs~I~l~~lA~~l~-ls~~~vE~~L~~lI~dgkl~a-kID~~~giv~~ 339 (374)
..+.+.+|......+...|++|+++.+++.|| ++.+++++++.+- | ++| .+|.|.+
T Consensus 132 ~gf~dsIR~~I~~~i~~aY~sI~~~~la~lLg~~s~~el~~fi~~~-------GW~vd-~~g~I~~ 189 (226)
T 1rz4_A 132 TGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKY-------GWSAD-ESGQIFI 189 (226)
T ss_dssp TTHHHHHHHHHHHHHHHHCSEECHHHHHHHTTSCCHHHHHHHHHHH-------TCEEC-C--CEEC
T ss_pred hHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHcCCCHHHHHHHHHHC-------CCEEC-CCccEEe
Confidence 44668899999999999999999999999995 8998888888772 4 666 5566654
No 201
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=86.96 E-value=0.99 Score=32.44 Aligned_cols=42 Identities=7% Similarity=0.176 Sum_probs=34.9
Q ss_pred HHHhhccc-cceeHHHHHhHhCCChHHHHHHHHHHhhcCccce
Q psy4083 287 LCRIIEPY-SRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHG 328 (374)
Q Consensus 287 l~~~~~pY-s~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~a 328 (374)
|+.++..- ..++...||+.||+|...|.+.|..|..+|-|..
T Consensus 15 IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 15 ILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp HHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEec
Confidence 44455433 4699999999999999999999999999998754
No 202
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.02 E-value=18 Score=35.47 Aligned_cols=109 Identities=22% Similarity=0.145 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHH
Q psy4083 39 QNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQ 118 (374)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~ 118 (374)
++-..|++++.+.|+|.++.+.+..+..-.... .....+++++.+
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~--------------------~~~~~kve~~l~--------------- 182 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGS--------------------MEMSEKIQFILE--------------- 182 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS--------------------SCHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc--------------------ccHHHHHHHHHH---------------
Confidence 445667999999999999988877765322110 101222333321
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-hccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy4083 119 SLEARLIALYFDTGEYTEALKLSSSLLKELKK-LDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTT 187 (374)
Q Consensus 119 ~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~-~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~ 187 (374)
.+++++..+||.+|-..+.++..-... ......++.++.+.++++...+||..+-.+|..+-..
T Consensus 183 -----q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 183 -----QMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp -----HHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 244566678888886555554322222 2346788889999999999999999987777765443
No 203
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.90 E-value=5.8 Score=36.67 Aligned_cols=45 Identities=13% Similarity=0.042 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHHHHhhccccceeHHHHHhHhCCC-hHHHHHHHH
Q psy4083 274 HIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLD-ELAVEKKLS 318 (374)
Q Consensus 274 h~~~L~~~ire~~l~~~~~pYs~I~l~~lA~~l~ls-~~~vE~~L~ 318 (374)
..+.+..++|..++..+.+.|.+|+++.+++.|+.+ ++++.+.+.
T Consensus 177 f~d~l~~~iR~~a~~~i~kaY~~i~l~~~~~~L~F~s~~e~~~F~~ 222 (274)
T 4b4t_T 177 FTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFAL 222 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHTCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhCCCCHHHHHHHHH
Confidence 356788999999999999999999999999999995 455554443
No 204
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=85.59 E-value=3.2 Score=32.30 Aligned_cols=68 Identities=12% Similarity=0.196 Sum_probs=50.4
Q ss_pred ccceeHHHHHhHh-CCChHHHHHHHHHHhhcCccceeecCCCCeEEEecCCcchHHHHHHHHHHHHHHH
Q psy4083 294 YSRVEVGFIAKSI-KLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFEGAEIDKTYEKALETITSMGK 361 (374)
Q Consensus 294 Ys~I~l~~lA~~l-~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~~~~~~~~~~y~~~~~~i~~l~~ 361 (374)
....++..||+.+ |++..-+-+.|.+|...|-|..+.|..++....+.-.+....+...+..+.+|..
T Consensus 25 ~~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~G~~l~~~~~~l~~w~~ 93 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLEGILDMLXAWGA 93 (107)
T ss_dssp TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECccHHHHHHHHHHHHHHHH
Confidence 4678999999999 9999999999999999999998888766644443333333334444555566653
No 205
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=85.49 E-value=3.1 Score=31.20 Aligned_cols=39 Identities=8% Similarity=0.015 Sum_probs=34.8
Q ss_pred ccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecC
Q psy4083 294 YSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQ 332 (374)
Q Consensus 294 Ys~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~ 332 (374)
...++...||+.+|++...+-+.|..|...|-+...-+.
T Consensus 28 ~~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~~~ 66 (100)
T 1ub9_A 28 RRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVI 66 (100)
T ss_dssp HSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecC
Confidence 357999999999999999999999999999999876633
No 206
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=85.15 E-value=9.3 Score=37.92 Aligned_cols=24 Identities=13% Similarity=-0.006 Sum_probs=19.3
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhh
Q psy4083 164 ESKTYHALSNLSTSRASLTSARTT 187 (374)
Q Consensus 164 ei~l~~~~~n~~~a~~~~~~a~~~ 187 (374)
-+.+|...|.+..+-.++.++...
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~l 236 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGL 236 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCC
Confidence 346788889999999999988654
No 207
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=85.06 E-value=8.9 Score=31.43 Aligned_cols=162 Identities=10% Similarity=-0.014 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHHHH
Q psy4083 41 ILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQSL 120 (374)
Q Consensus 41 ~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~~l 120 (374)
.+..+..+...|++++....+......-+.-+..... .-.+.-.. +..+.-+..+...++... +...+. +
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~--la~~~~~~----g~~~~A~~~~~~a~~~~p-~~~~~~---~ 78 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLA--KADCLLET----KQFELAQELLATIPLEYQ-DNSYKS---L 78 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHH--HHHHHHHT----TCHHHHHHHHTTCCGGGC-CHHHHH---H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH--HHHHHHHC----CCHHHHHHHHHHhhhccC-ChHHHH---H
Confidence 4566889999999999877776665554444222111 11111111 112222222222111100 001110 0
Q ss_pred HHHHHHH-HHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhH
Q psy4083 121 EARLIAL-YFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQA 199 (374)
Q Consensus 121 ~~kLa~~-~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~ 199 (374)
++.+ +...++..+|+..+.+.+. .+.. -.+.++.-..++...|++..+...+.++.... +++ ...
T Consensus 79 ---~~~~~~~~~~~~~~a~~~~~~al~----~~P~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----p~~-~~~ 144 (176)
T 2r5s_A 79 ---IAKLELHQQAAESPELKRLEQELA----ANPD--NFELACELAVQYNQVGRDEEALELLWNILKVN----LGA-QDG 144 (176)
T ss_dssp ---HHHHHHHHHHTSCHHHHHHHHHHH----HSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----TTT-TTT
T ss_pred ---HHHHHHHhhcccchHHHHHHHHHH----hCCC--CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC----ccc-ChH
Confidence 1111 1122233345554444442 1211 13566677788889999999999998876542 111 111
Q ss_pred HHHHHHHHHhhcccccHHHHHHHHHHhc
Q psy4083 200 ALDLQSGILHAADEQDFKTAFSYFYEAF 227 (374)
Q Consensus 200 ~i~~~~G~~~~~~~rdy~~A~~~F~eaf 227 (374)
......|.++. ..|++..|...|-.++
T Consensus 145 ~a~~~l~~~~~-~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 145 EVKKTFMDILS-ALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHH-HHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HhCCCCcHHHHHHHHH
Confidence 22334455666 6788888887776553
No 208
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=84.95 E-value=2 Score=42.54 Aligned_cols=88 Identities=14% Similarity=0.090 Sum_probs=59.0
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHH
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALD 202 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~ 202 (374)
.+|..|.+.|+|++|++.+.+.++ . ++ .-.+.+.....++..++++..|...+.+|..... .++....
T Consensus 45 ~lg~~~~~~g~~~~A~~~~~~al~----l-~p-~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p---~~~~~~~--- 112 (477)
T 1wao_1 45 NRSLAYLRTECYGYALGDATRAIE----L-DK-KYIKGYYRRAASNMALGKFRAALRDYETVVKVKP---HDKDAKM--- 112 (477)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH----S-CT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST---TCTTHHH---
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHH----h-CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHH---
Confidence 478899999999999988877763 1 22 1245667778899999999999999999877631 2232222
Q ss_pred HHHHHH--hhcccccHHHHHHHHH
Q psy4083 203 LQSGIL--HAADEQDFKTAFSYFY 224 (374)
Q Consensus 203 ~~~G~~--~~~~~rdy~~A~~~F~ 224 (374)
..|.. ++ ..++|.+|...+-
T Consensus 113 -~l~~~~~~~-~~g~~~~A~~~~~ 134 (477)
T 1wao_1 113 -KYQECNKIV-KQKAFERAIAGDE 134 (477)
T ss_dssp -HHHHHHHHH-HHHHHCCC-----
T ss_pred -HHHHHHHHH-HHHHHHHHhcccc
Confidence 22333 55 6789999888776
No 209
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=84.71 E-value=7.6 Score=31.45 Aligned_cols=65 Identities=12% Similarity=0.204 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHhhccccce-eHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEEec
Q psy4083 275 IGTLYDNMLEQNLCRIIEPYSRV-EVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFE 341 (374)
Q Consensus 275 ~~~L~~~ire~~l~~~~~pYs~I-~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~~~ 341 (374)
+..+++.|+...+..-+.|=.++ +...||+.||+|..-|.+-+..|..+|-+..+ +..|+.+...
T Consensus 16 Y~QI~~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~--~g~G~~V~~~ 81 (134)
T 4ham_A 16 YEQIVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITV--KGKGTFIANQ 81 (134)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEECCC
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEE--cCcEEEEeCC
Confidence 46788888888888889999999 89999999999999999999999999988654 5567776543
No 210
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=83.61 E-value=2.8 Score=30.77 Aligned_cols=42 Identities=7% Similarity=0.044 Sum_probs=35.0
Q ss_pred HHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccce
Q psy4083 287 LCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHG 328 (374)
Q Consensus 287 l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~a 328 (374)
++.++.....++...||+.+|+|...|-+.|..|...|-+..
T Consensus 5 Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 5 ILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQR 46 (81)
T ss_dssp HHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 333443345699999999999999999999999999999874
No 211
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=83.15 E-value=12 Score=28.93 Aligned_cols=92 Identities=10% Similarity=-0.008 Sum_probs=55.9
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHHHHH
Q psy4083 42 LQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQSLE 121 (374)
Q Consensus 42 ~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~~l~ 121 (374)
+.++..+.+.|++++....+......-+.-+.+... +-.+.... +..+.-+..+..+++-...+ .....
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~--lg~~~~~~----g~~~~A~~~~~~al~l~P~~----~~~~~- 89 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRS--LGLTQAEN----EKDGLAIIALNHARMLDPKD----IAVHA- 89 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH--HHHHHHHT----TCHHHHHHHHHHHHHHCTTC----HHHHH-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHH--HHHHHHHc----CCHHHHHHHHHHHHHhCCCC----HHHHH-
Confidence 456889999999999988888777665554332221 11122212 22333355554555432212 22333
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHH
Q psy4083 122 ARLIALYFDTGEYTEALKLSSSLL 145 (374)
Q Consensus 122 ~kLa~~~~~~g~~~~Al~~~~~ll 145 (374)
.||.+|...|++++|+..+.+.+
T Consensus 90 -~la~~~~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 90 -ALAVSHTNEHNANAALASLRAWL 112 (121)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHcCCHHHHHHHHHHHH
Confidence 57889999999999988877665
No 212
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=80.36 E-value=3.9 Score=32.27 Aligned_cols=63 Identities=16% Similarity=0.202 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHhhccccce-eHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEE
Q psy4083 275 IGTLYDNMLEQNLCRIIEPYSRV-EVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIV 339 (374)
Q Consensus 275 ~~~L~~~ire~~l~~~~~pYs~I-~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~ 339 (374)
...+++.++......-+.|=.++ +...||+.||+|...|.+-+..|..+|-+..+ +..|+.+.
T Consensus 11 ~~~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~--~~~G~~V~ 74 (113)
T 3tqn_A 11 YQQLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKR--RGLGMLVK 74 (113)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEEC
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe--cCCeEEEe
Confidence 45678888888888888999999 99999999999999999999999999987543 56677665
No 213
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=80.30 E-value=6 Score=33.15 Aligned_cols=49 Identities=22% Similarity=0.321 Sum_probs=42.5
Q ss_pred HHHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccc---eeecCC
Q psy4083 285 QNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFH---GILDQG 333 (374)
Q Consensus 285 ~~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~---akID~~ 333 (374)
+.|+..+..=.+++...||+.+|+|+..+-+.+-+|...|.|. +.+|+.
T Consensus 6 ~~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~~~~a~~~~~ 57 (162)
T 3i4p_A 6 RKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIRRRVALLDPV 57 (162)
T ss_dssp HHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCCCCCCCCTT
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeeceeeeCHH
Confidence 4567777777899999999999999999999999999999875 577854
No 214
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=80.23 E-value=6.2 Score=30.52 Aligned_cols=68 Identities=9% Similarity=0.077 Sum_probs=50.0
Q ss_pred ccceeHHHHHhHh-CCChHHHHHHHHHHhhcCccceeecCCCCeEEEecCCcchHHHHHHHHHHHHHHH
Q psy4083 294 YSRVEVGFIAKSI-KLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFEGAEIDKTYEKALETITSMGK 361 (374)
Q Consensus 294 Ys~I~l~~lA~~l-~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~~~~~~~~~~y~~~~~~i~~l~~ 361 (374)
....++..||+.+ |++..-+-..|.+|...|-+..+.|..++....+.-.+........+..+.+|..
T Consensus 36 ~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~~~l~~l~~w~~ 104 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLGEKVLPIIDEIAKFGM 104 (107)
T ss_dssp TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHTTHHHHHHHHHHHH
T ss_pred hCCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeeEEEECccHHHHHHHHHHHHHHHH
Confidence 4678999999999 5999999999999999999998888766654444444333333444555566653
No 215
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=79.83 E-value=11 Score=26.30 Aligned_cols=66 Identities=15% Similarity=0.084 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHHHHHHHHhhcccccHHHHHHHHHHhccC
Q psy4083 156 LLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEG 229 (374)
Q Consensus 156 ~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~ 229 (374)
...+.+......+...+++.++...+.++..... .+ .......|.++. ..++|.+|..+|-.+.+.
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~---~~----~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP---NN----AEAWYNLGNAYY-KQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TC----HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC---CC----HHHHHHHHHHHH-HHhhHHHHHHHHHHHHhc
Confidence 3445667778888999999999999999876531 12 234456688888 899999999999988653
No 216
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=79.64 E-value=13 Score=27.87 Aligned_cols=50 Identities=20% Similarity=0.205 Sum_probs=38.9
Q ss_pred HHHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCC
Q psy4083 285 QNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGE 334 (374)
Q Consensus 285 ~~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~ 334 (374)
..+..++..-..++...||+.+|++..-+-+.|..|...|-+...-+..+
T Consensus 25 ~~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~~~~ 74 (109)
T 2d1h_A 25 AVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTEGK 74 (109)
T ss_dssp HHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC---
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeccccC
Confidence 34444554456799999999999999999999999999999977655433
No 217
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=79.57 E-value=15 Score=26.59 Aligned_cols=68 Identities=7% Similarity=-0.055 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHHHHHHHHhhcccccHHHHHHHHHHhccCcCcc
Q psy4083 158 VEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEGFSTV 233 (374)
Q Consensus 158 lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~f~~~ 233 (374)
.+.+......++..+++..+...+.++..... .+ ......-|..++ ..++|..|...|-.+.+-....
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p---~~----~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQP---QN----PVGYSNKAMALI-KLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT---TC----HHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CC----HHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCc
Confidence 34566677888999999999999999876631 12 244556788888 9999999999999998765543
No 218
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=79.46 E-value=12 Score=28.00 Aligned_cols=65 Identities=14% Similarity=0.043 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHHHHHHHHhhcccccHHHHHHHHHHhccCcC
Q psy4083 159 EVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEGFS 231 (374)
Q Consensus 159 ev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~f~ 231 (374)
..+.....++...+++..+...+.++.... |.. ......-|.++. ..++|..|...|-.+.+-..
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------p~~-~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~ 84 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALDFD------PTY-SVAWKWLGKTLQ-GQGDRAGARQAWESGLAAAQ 84 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTC-HHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHC------CCc-HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhcc
Confidence 566777888999999999999999987653 211 223456688888 89999999999988866443
No 219
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=79.41 E-value=11 Score=32.12 Aligned_cols=87 Identities=14% Similarity=0.146 Sum_probs=59.3
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhC----CHHHHHHHHHHHHhhccccCCChhhh
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALS----NLSTSRASLTSARTTANSIYCPPKMQ 198 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~----n~~~a~~~~~~a~~~~~~~~~~~~~~ 198 (374)
.|+.+|...|++++|++.+.+... ..+ .+.+..--.+|.. + |+.++..++.+|-.. .+|.-+
T Consensus 23 ~lg~~~~~~~~~~~A~~~~~~a~~----~g~----~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~-----g~~~a~ 88 (212)
T 3rjv_A 23 YLADTWVSSGDYQKAEYWAQKAAA----QGD----GDALALLAQLKIR-NPQQADYPQARQLAEKAVEA-----GSKSGE 88 (212)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH----TTC----HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT-----TCHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHH----cCC----HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC-----CCHHHH
Confidence 588899999999999888876642 122 1333333444555 6 899999999998432 233322
Q ss_pred HHHHHHHHHHhhcc----cccHHHHHHHHHHhcc
Q psy4083 199 AALDLQSGILHAAD----EQDFKTAFSYFYEAFE 228 (374)
Q Consensus 199 ~~i~~~~G~~~~~~----~rdy~~A~~~F~eaf~ 228 (374)
..-|.++. . .+|+.+|..+|-.+.+
T Consensus 89 ----~~Lg~~y~-~g~g~~~d~~~A~~~~~~A~~ 117 (212)
T 3rjv_A 89 ----IVLARVLV-NRQAGATDVAHAITLLQDAAR 117 (212)
T ss_dssp ----HHHHHHHT-CGGGSSCCHHHHHHHHHHHTS
T ss_pred ----HHHHHHHH-cCCCCccCHHHHHHHHHHHHH
Confidence 23356666 5 7899999999999865
No 220
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=79.10 E-value=5.2 Score=34.01 Aligned_cols=48 Identities=15% Similarity=0.272 Sum_probs=40.5
Q ss_pred HHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccc---eeecCC
Q psy4083 286 NLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFH---GILDQG 333 (374)
Q Consensus 286 ~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~---akID~~ 333 (374)
.++..+..-.+++...||+.+|+|...+-+.|.+|...|-|. +.+|+.
T Consensus 21 ~IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~~~~~~~d~~ 71 (171)
T 2ia0_A 21 NILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQERGVIERYTIILGEQ 71 (171)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTT
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecccCCHH
Confidence 455556556789999999999999999999999999999885 467765
No 221
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=79.01 E-value=45 Score=31.69 Aligned_cols=213 Identities=12% Similarity=0.047 Sum_probs=113.8
Q ss_pred HHHHHHHHHHhCC-HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHHH
Q psy4083 41 ILQLGEKYKQEGK-AIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQS 119 (374)
Q Consensus 41 ~~~l~~~~~~~~~-~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~~ 119 (374)
...++.++...|+ +++..+.+......-+........ ...++... +..+.-+..+..+|+--..+-..|.
T Consensus 134 ~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~--~g~~~~~~----g~~~eAl~~~~kal~ldP~~~~a~~--- 204 (382)
T 2h6f_A 134 WHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH--RRVLVEWL----RDPSQELEFIADILNQDAKNYHAWQ--- 204 (382)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH--HHHHHHHH----TCCTTHHHHHHHHHHHCTTCHHHHH---
T ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHH--HHHHHHHc----cCHHHHHHHHHHHHHhCccCHHHHH---
Confidence 4678889999996 999888877777665544332221 12223333 2234446666666654322323442
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH-hCCHHHH-----HHHHHHHHhhccccCC
Q psy4083 120 LEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHA-LSNLSTS-----RASLTSARTTANSIYC 193 (374)
Q Consensus 120 l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~-~~n~~~a-----~~~~~~a~~~~~~~~~ 193 (374)
.++.++...|++++|+..+.+.++ .+.. -.+.+.....++.. .+....+ ..++.+|..+
T Consensus 205 ---~lg~~~~~~g~~~eAl~~~~~al~----l~P~--~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l------ 269 (382)
T 2h6f_A 205 ---HRQWVIQEFKLWDNELQYVDQLLK----EDVR--NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL------ 269 (382)
T ss_dssp ---HHHHHHHHHTCCTTHHHHHHHHHH----HCTT--CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH------
T ss_pred ---HHHHHHHHcCChHHHHHHHHHHHH----hCCC--CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH------
Confidence 367788889999999998888874 1221 12344555556666 3443555 3667776554
Q ss_pred ChhhhHHHHHHHHHHhhcccc--cHHHHHHHHHHhccCcCcccchhHHHHHHHHHHHHHhcC-----C-c---hhHHHHH
Q psy4083 194 PPKMQAALDLQSGILHAADEQ--DFKTAFSYFYEAFEGFSTVDHNHAMMSLKYMLLSKIMLN-----T-P---EDVNQIL 262 (374)
Q Consensus 194 ~~~~~~~i~~~~G~~~~~~~r--dy~~A~~~F~eaf~~f~~~~~~~~~~~LkY~vL~~iL~~-----~-~---~~v~~ll 262 (374)
+|.-.....-.++++ . ..+ +|.+|...+.+. + .++....++..++-|-.-.+ + . .+-..++
T Consensus 270 ~P~~~~a~~~l~~ll-~-~~g~~~~~~a~~~~~~~-~-----~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~ 341 (382)
T 2h6f_A 270 VPHNESAWNYLKGIL-Q-DRGLSKYPNLLNQLLDL-Q-----PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELC 341 (382)
T ss_dssp STTCHHHHHHHHHHH-T-TTCGGGCHHHHHHHHHH-T-----TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH-H-ccCccchHHHHHHHHHh-c-----cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 333333333334443 3 333 788887766554 2 11222222222221111111 0 1 1112222
Q ss_pred HH--HhcChHHHhhHHHHHHHHHHH
Q psy4083 263 SE--LEDDTIVKAHIGTLYDNMLEQ 285 (374)
Q Consensus 263 ~~--l~~D~~l~~h~~~L~~~ire~ 285 (374)
.. +..||.-..+|..+...+..+
T Consensus 342 ~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 342 EILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHhCchhHHHHHHHHHHHHHH
Confidence 23 478998888888776666554
No 222
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=78.97 E-value=3.6 Score=34.41 Aligned_cols=48 Identities=10% Similarity=0.182 Sum_probs=40.4
Q ss_pred HHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccc---eeecCC
Q psy4083 286 NLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFH---GILDQG 333 (374)
Q Consensus 286 ~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~---akID~~ 333 (374)
.++.++....+++...||+.+|+|...+-+.|.+|...|-|. +.+|+.
T Consensus 14 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 64 (162)
T 2p5v_A 14 KILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPE 64 (162)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEeeecccCChH
Confidence 455566666789999999999999999999999999999885 466644
No 223
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=77.50 E-value=32 Score=29.14 Aligned_cols=165 Identities=10% Similarity=0.103 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHH
Q psy4083 39 QNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQ 118 (374)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~ 118 (374)
.+.+.++.++...|++++..+++...... + . +.+.-.+-.+... ...+...+.-+..+...++ .+ ....
T Consensus 19 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-g-~--~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~----~g--~~~a 87 (212)
T 3rjv_A 19 RAQYYLADTWVSSGDYQKAEYWAQKAAAQ-G-D--GDALALLAQLKIR-NPQQADYPQARQLAEKAVE----AG--SKSG 87 (212)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHT-T-C--HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH----TT--CHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHc-C-C--HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH----CC--CHHH
Confidence 46788899999999999998888776543 1 1 1111111112111 1111112222333333221 22 1222
Q ss_pred HHHHHHHHHHHh----ccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhhccc
Q psy4083 119 SLEARLIALYFD----TGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHA----LSNLSTSRASLTSARTTANS 190 (374)
Q Consensus 119 ~l~~kLa~~~~~----~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~----~~n~~~a~~~~~~a~~~~~~ 190 (374)
.. .|+.+|.. .+++++|++.+.+... ..+.....+.+..--.+|.. .+|+.++..++.+|-...
T Consensus 88 ~~--~Lg~~y~~g~g~~~d~~~A~~~~~~A~~----~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~-- 159 (212)
T 3rjv_A 88 EI--VLARVLVNRQAGATDVAHAITLLQDAAR----DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS-- 159 (212)
T ss_dssp HH--HHHHHHTCGGGSSCCHHHHHHHHHHHTS----STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--
T ss_pred HH--HHHHHHHcCCCCccCHHHHHHHHHHHHH----cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--
Confidence 23 58888987 8899999877765531 11211335666666777877 889999999999986542
Q ss_pred cCCChhhhHHHHHHHHHHhhcc-----cccHHHHHHHHHHhcc
Q psy4083 191 IYCPPKMQAALDLQSGILHAAD-----EQDFKTAFSYFYEAFE 228 (374)
Q Consensus 191 ~~~~~~~~~~i~~~~G~~~~~~-----~rdy~~A~~~F~eaf~ 228 (374)
.++.- ...-|.++.-. .+|+..|..+|-.+.+
T Consensus 160 --~~~~a----~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 160 --RTGYA----EYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp --CTTHH----HHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred --CCHHH----HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 23321 12335554412 3399999999988855
No 224
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=77.39 E-value=26 Score=28.14 Aligned_cols=70 Identities=4% Similarity=0.034 Sum_probs=52.1
Q ss_pred ccceeHHHHHhHh-CCChHHHHHHHHHHhhcCccceeecCCCCeEEEecCCcchHHHHHHHHHHHHHHHHH
Q psy4083 294 YSRVEVGFIAKSI-KLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFEGAEIDKTYEKALETITSMGKVI 363 (374)
Q Consensus 294 Ys~I~l~~lA~~l-~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~~~~~~~~~~y~~~~~~i~~l~~~v 363 (374)
....++..|++.+ |++..-+-+.|.+|...|-|.-+.|..++..+.+.-.+........+..+.+|....
T Consensus 46 ~g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~~~l~~l~~w~~~~ 116 (131)
T 1yyv_A 46 DGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVSDXVAALADWIELN 116 (131)
T ss_dssp GCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECccHHHHHHHHHHHHHHHHHH
Confidence 4678999999999 799999999999999999999888877665544444444444444555555665533
No 225
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=77.25 E-value=11 Score=28.30 Aligned_cols=74 Identities=8% Similarity=-0.011 Sum_probs=50.9
Q ss_pred HHhhccccceeHHHH----HhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEEecCCcchHHHHHHHHHHHHHHHHH
Q psy4083 288 CRIIEPYSRVEVGFI----AKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFEGAEIDKTYEKALETITSMGKVI 363 (374)
Q Consensus 288 ~~~~~pYs~I~l~~l----A~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~~~~~~~~~~y~~~~~~i~~l~~~v 363 (374)
+.++.....++...| |+.+|++..-+-+.|.+|...|-+.-..|.....+... +.....++...+..+++...+
T Consensus 14 L~~l~~~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT--~~G~~~~~~~~~~~~~~~~~~ 91 (99)
T 1tbx_A 14 LAYLYDNEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQERGEKRLYLT--EKGKLFAISLKTAIETYKQIK 91 (99)
T ss_dssp HHHHTTCTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEC--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEecCCceEEEEC--HHHHHHHHHHHHHHHHHHHHH
Confidence 334444567889999 99999999999999999999999988777744444443 222344555555555554444
No 226
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=77.23 E-value=14 Score=27.41 Aligned_cols=45 Identities=13% Similarity=0.129 Sum_probs=37.2
Q ss_pred HhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCC
Q psy4083 289 RIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQG 333 (374)
Q Consensus 289 ~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~ 333 (374)
.++..-..++...||+.+|+|...+-+.|..|...|-+...-|..
T Consensus 31 ~~l~~~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~~r 75 (99)
T 3cuo_A 31 CMLSGSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDAQ 75 (99)
T ss_dssp HHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSS
T ss_pred HHHHhCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCC
Confidence 344444579999999999999999999999999999997755533
No 227
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=76.93 E-value=9 Score=27.70 Aligned_cols=62 Identities=15% Similarity=0.060 Sum_probs=46.6
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHHHHHHHHhhcccccHHHHHHHHHHhccCc
Q psy4083 162 LLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEGF 230 (374)
Q Consensus 162 l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~f 230 (374)
+.....+...+++..+...+.++..... .++. ......|.++. ..++|..|...|-.+.+-.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p---~~~~---~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEP---VGKD---EAYYLMGNAYR-KLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCS---STHH---HHHHHHHHHHH-HHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCC---CcHH---HHHHHHHHHHH-HcCCHHHHHHHHHHHHhcC
Confidence 3456778899999999999999876521 1221 25566788888 8999999999999986543
No 228
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=76.74 E-value=49 Score=32.23 Aligned_cols=135 Identities=10% Similarity=-0.019 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHHH
Q psy4083 40 NILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQS 119 (374)
Q Consensus 40 ~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~~ 119 (374)
+...++.++.+.|++++..+.+..-....+......... ..+++.. .+..+.-..++...++...++..+|
T Consensus 358 ~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~---a~~~~~~--~~~~~~A~~~~e~al~~~p~~~~~~---- 428 (530)
T 2ooe_A 358 VYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA---ALMEYYC--SKDKSVAFKIFELGLKKYGDIPEYV---- 428 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHH---HHHHHHH--TCCHHHHHHHHHHHHHHHTTCHHHH----
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHH---HHHHHHH--cCChhHHHHHHHHHHHHCCCCHHHH----
Confidence 444556666777777777766666554332221112111 1122211 1223444556666666544333444
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy4083 120 LEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTT 187 (374)
Q Consensus 120 l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~ 187 (374)
+ .++.++...|++++|..++.+.+... ..++....+++..-+++....||...+..+..++.+.
T Consensus 429 ~--~~~~~~~~~g~~~~Ar~~~~~al~~~--~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 429 L--AYIDYLSHLNEDNNTRVLFERVLTSG--SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp H--HHHHHHTTTTCHHHHHHHHHHHHHSC--CSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHhCCCHhhHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 47888889999999988887776310 1233334556666677777889999999988887654
No 229
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=76.41 E-value=5.1 Score=32.33 Aligned_cols=64 Identities=16% Similarity=0.132 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHhhccccce-eHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEEe
Q psy4083 275 IGTLYDNMLEQNLCRIIEPYSRV-EVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVF 340 (374)
Q Consensus 275 ~~~L~~~ire~~l~~~~~pYs~I-~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~~ 340 (374)
...+++.++...+..-+.|=.++ +...||+.||+|...|.+-+..|..+|-|.. -+..|+.+..
T Consensus 13 ~~~i~~~l~~~I~~g~~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~--~~g~G~~V~~ 77 (126)
T 3by6_A 13 YLQLVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRT--IPGKGTFITG 77 (126)
T ss_dssp HHHHHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--ETTTEEEECS
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE--ecCCeEEEcc
Confidence 45677888888888788899999 9999999999999999999999999998854 4566777664
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=75.91 E-value=12 Score=28.30 Aligned_cols=69 Identities=9% Similarity=-0.085 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHHHHHHHHhhcccccHHHHHHHHHHhcc
Q psy4083 159 EVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFE 228 (374)
Q Consensus 159 ev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~ 228 (374)
+-|+..-+.++..+++.+|..-+..|............-...+...-|..+. ..|+|..|..++-++.+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~-~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY-QQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHH-HccCHHHHHHHHHHHHh
Confidence 3466777889999999999999999876542111112234567788888889 99999999999988854
No 231
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=75.57 E-value=5.5 Score=31.99 Aligned_cols=64 Identities=9% Similarity=0.073 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHhhccccce-eHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEEe
Q psy4083 275 IGTLYDNMLEQNLCRIIEPYSRV-EVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVF 340 (374)
Q Consensus 275 ~~~L~~~ire~~l~~~~~pYs~I-~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~~ 340 (374)
...+++.++......-+.|=.++ +...||+.||+|...|.+-+..|..+|-|..+ +..|+.+..
T Consensus 15 ~~~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~g~G~~V~~ 79 (125)
T 3neu_A 15 YSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAK--RGMGSFVTS 79 (125)
T ss_dssp HHHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEECC
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEe--cCCEEEEec
Confidence 45678888888888888899999 59999999999999999999999999988553 556777664
No 232
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=74.45 E-value=63 Score=31.03 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHH----hCCHHHHHHHHHHHH
Q psy4083 39 QNILQLGEKYKQ----EGKAIELAELIKKTR 65 (374)
Q Consensus 39 ~~~~~l~~~~~~----~~~~~~l~~~l~~l~ 65 (374)
++.+.++..+.. .++++...+++....
T Consensus 40 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~ 70 (490)
T 2xm6_A 40 KAQLELGYRYFQGNETTKDLTQAMDWFRRAA 70 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHH
Confidence 355666777777 677777666665544
No 233
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=74.30 E-value=22 Score=27.95 Aligned_cols=52 Identities=12% Similarity=0.077 Sum_probs=42.0
Q ss_pred HHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEE
Q psy4083 287 LCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLI 338 (374)
Q Consensus 287 l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~ 338 (374)
++..+.....++...||+.+|++...+-+.|.+|...|-+.-.-|..++...
T Consensus 41 iL~~l~~~~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~~~~d~R~~ 92 (142)
T 2fbi_A 41 VIRILRQQGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQRRV 92 (142)
T ss_dssp HHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEE
T ss_pred HHHHHHHcCCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCCee
Confidence 3444444456999999999999999999999999999999887776666433
No 234
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=74.04 E-value=4.8 Score=30.36 Aligned_cols=39 Identities=10% Similarity=0.161 Sum_probs=34.2
Q ss_pred HhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccce
Q psy4083 289 RIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHG 328 (374)
Q Consensus 289 ~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~a 328 (374)
.++..-. ++...||+.||+|...|-+.|-.|-.+|.|..
T Consensus 24 ~lL~~~g-~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~ 62 (82)
T 1oyi_A 24 KTIGIEG-ATAAQLTRQLNMEKREVNKALYDLQRSAMVYS 62 (82)
T ss_dssp HHHSSST-EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEE
T ss_pred HHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 4555544 99999999999999999999999999998865
No 235
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=73.92 E-value=15 Score=27.16 Aligned_cols=63 Identities=14% Similarity=0.030 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHHHHHHHHhhcccccHHHHHHHHHHhccC
Q psy4083 159 EVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEG 229 (374)
Q Consensus 159 ev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~ 229 (374)
+.+.....++...|++..|...+.++.... |.. ......-|.++. ..++|..|...|-.+.+-
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------p~~-~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETD------PDY-VGTYYHLGKLYE-RLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------TTC-THHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCc-HHHHHHHHHHHH-HcCCHHHHHHHHHHHHhh
Confidence 455666788899999999999999987663 211 124456688888 899999999999888653
No 236
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=73.88 E-value=15 Score=28.87 Aligned_cols=54 Identities=15% Similarity=0.050 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeec
Q psy4083 276 GTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILD 331 (374)
Q Consensus 276 ~~L~~~ire~~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID 331 (374)
+-|-+..|.+.+..+.+ ..++...||+.+|+|..-+-..|..|...|-+..+-+
T Consensus 13 ~al~~~~R~~Il~~L~~--~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~ 66 (118)
T 3f6o_A 13 QALADPTRRAVLGRLSR--GPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQ 66 (118)
T ss_dssp HHHTSHHHHHHHHHHHT--CCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHhCCHHHHHHHHHHHh--CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEec
Confidence 34444455555544443 5689999999999999999999999999999987666
No 237
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=73.77 E-value=4.6 Score=31.43 Aligned_cols=56 Identities=9% Similarity=0.039 Sum_probs=44.7
Q ss_pred HHHHHHHhhccccce-eHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEE
Q psy4083 283 LEQNLCRIIEPYSRV-EVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIV 339 (374)
Q Consensus 283 re~~l~~~~~pYs~I-~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~ 339 (374)
+...+ ..+.|=..+ +...||+.||+|..-|.+-|..|..+|-+..+-.-..|+.+.
T Consensus 30 ~~~I~-~~l~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~gG~~G~~V~ 86 (102)
T 2b0l_A 30 IEHIF-EELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGTYIK 86 (102)
T ss_dssp HHHHT-TSSBTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSCEEEE
T ss_pred HHHHH-hhhcCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeCCCCcEEEe
Confidence 55555 777887887 999999999999999999999999999886543224566665
No 238
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=73.76 E-value=11 Score=29.83 Aligned_cols=41 Identities=10% Similarity=0.109 Sum_probs=36.7
Q ss_pred cceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCC
Q psy4083 295 SRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEK 335 (374)
Q Consensus 295 s~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~g 335 (374)
..++...||+.+|++..-+-+.|.+|...|-+.-+-|..++
T Consensus 52 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~ 92 (127)
T 2frh_A 52 KEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDE 92 (127)
T ss_dssp SEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSS
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCC
Confidence 67999999999999999999999999999999876666555
No 239
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=73.25 E-value=20 Score=28.09 Aligned_cols=50 Identities=4% Similarity=-0.015 Sum_probs=40.7
Q ss_pred HHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeE
Q psy4083 288 CRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVL 337 (374)
Q Consensus 288 ~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv 337 (374)
+.++.....++...||+.+|++...+-+.|.+|...|-+.-.-|..++..
T Consensus 44 L~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~ 93 (140)
T 2nnn_A 44 LVRLGETGPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRSADPDDGRR 93 (140)
T ss_dssp HHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEETTEEEE
T ss_pred HHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCe
Confidence 33333345799999999999999999999999999999988777666543
No 240
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=73.02 E-value=17 Score=27.11 Aligned_cols=50 Identities=18% Similarity=0.221 Sum_probs=39.6
Q ss_pred HHHHHHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCC
Q psy4083 282 MLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQG 333 (374)
Q Consensus 282 ire~~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~ 333 (374)
.|.+.+..+.+ ..++...||+.+|+|...+-+.|..|...|-+..+-+..
T Consensus 24 ~r~~Il~~L~~--~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~ 73 (98)
T 3jth_A 24 RRLQILCMLHN--QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKEAQ 73 (98)
T ss_dssp HHHHHHHHTTT--SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTT
T ss_pred HHHHHHHHHhc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 34444444433 689999999999999999999999999999998764433
No 241
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=72.89 E-value=26 Score=27.70 Aligned_cols=49 Identities=8% Similarity=0.104 Sum_probs=40.7
Q ss_pred HHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCC
Q psy4083 286 NLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEK 335 (374)
Q Consensus 286 ~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~g 335 (374)
.++.++. ...++...||+.+|++...+-+.|.+|...|-+.-.-|..++
T Consensus 41 ~iL~~l~-~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~ 89 (146)
T 2gxg_A 41 LVLRATS-DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDREDR 89 (146)
T ss_dssp HHHHHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred HHHHHHh-cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeecCCCCC
Confidence 3444455 778999999999999999999999999999999877665544
No 242
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=72.81 E-value=24 Score=27.88 Aligned_cols=47 Identities=15% Similarity=0.070 Sum_probs=39.2
Q ss_pred HhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCC
Q psy4083 289 RIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEK 335 (374)
Q Consensus 289 ~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~g 335 (374)
.++.....++...||+.+|++...+-+.|.+|...|-+.-.-|..++
T Consensus 36 ~~l~~~~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~~~~~d~ 82 (144)
T 1lj9_A 36 VRVCENPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNK 82 (144)
T ss_dssp HHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred HHHHHCcCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCC
Confidence 33333457999999999999999999999999999999877766554
No 243
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=72.79 E-value=19 Score=28.23 Aligned_cols=53 Identities=9% Similarity=0.039 Sum_probs=42.9
Q ss_pred HHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEE
Q psy4083 287 LCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIV 339 (374)
Q Consensus 287 l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~ 339 (374)
++.++.....++...||+.+|++...+-+.|.+|...|-+.-.-|..++....
T Consensus 34 iL~~l~~~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~ 86 (138)
T 3bpv_A 34 CLLRIHREPGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDPENRRRYI 86 (138)
T ss_dssp HHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred HHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCceeEE
Confidence 33444445779999999999999999999999999999998877776664433
No 244
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=72.15 E-value=7.4 Score=31.51 Aligned_cols=63 Identities=8% Similarity=0.082 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHhhccccce-eHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEE
Q psy4083 275 IGTLYDNMLEQNLCRIIEPYSRV-EVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIV 339 (374)
Q Consensus 275 ~~~L~~~ire~~l~~~~~pYs~I-~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~ 339 (374)
...+++.++...+..-+.|=.++ +...||+.||+|...|.+-+..|..+|-+.. -+..|+.+.
T Consensus 6 ~~~i~~~i~~~I~~g~l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~--~~g~G~~V~ 69 (129)
T 2ek5_A 6 YKQIASLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILYK--KRGIGMFVS 69 (129)
T ss_dssp HHHHHHHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEE--ETTTEEEEC
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE--ecCCEEEEe
Confidence 35677788888777788888999 8999999999999999999999999998854 455677665
No 245
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=71.88 E-value=5.6 Score=32.75 Aligned_cols=48 Identities=10% Similarity=0.128 Sum_probs=40.8
Q ss_pred HHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccce---eecCC
Q psy4083 286 NLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHG---ILDQG 333 (374)
Q Consensus 286 ~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~a---kID~~ 333 (374)
.++..+..-.+++...||+.+|+|...+-+.+.+|...|-|.+ .+|+.
T Consensus 12 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~ 62 (152)
T 2cg4_A 12 GILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQAGIITGARIDVSPK 62 (152)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEEEEEECTT
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcceEEEecCHH
Confidence 4555666668899999999999999999999999999998864 67865
No 246
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=71.85 E-value=24 Score=28.32 Aligned_cols=50 Identities=10% Similarity=0.094 Sum_probs=40.9
Q ss_pred HHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCC
Q psy4083 286 NLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEK 335 (374)
Q Consensus 286 ~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~g 335 (374)
.++.++.....++...||+.+|++...+-+.|.+|...|-+.-.-|..++
T Consensus 41 ~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~ 90 (155)
T 1s3j_A 41 FVLASLKKHGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNTKDR 90 (155)
T ss_dssp HHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred HHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCCCCC
Confidence 34444444567999999999999999999999999999999877665544
No 247
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=71.65 E-value=2.5 Score=32.53 Aligned_cols=64 Identities=8% Similarity=0.012 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHhhccccce-eHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEEe
Q psy4083 275 IGTLYDNMLEQNLCRIIEPYSRV-EVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVF 340 (374)
Q Consensus 275 ~~~L~~~ire~~l~~~~~pYs~I-~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~~ 340 (374)
...+++.++...+...+.|=..+ +...||+.||+|..-|.+.|..|...|-+..+ +..|+.+..
T Consensus 13 ~~~l~~~i~~~I~~~~l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~~~--~g~G~~v~~ 77 (102)
T 1v4r_A 13 YADVATHFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSR--GALGTVVEK 77 (102)
T ss_dssp HHHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEE--TTTEEESCS
T ss_pred HHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe--CCCeEEEcc
Confidence 45677777777666677777888 99999999999999999999999999988643 444665543
No 248
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=71.61 E-value=10 Score=31.19 Aligned_cols=67 Identities=12% Similarity=0.135 Sum_probs=47.8
Q ss_pred ccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEEecCCcchHHHHHHHHHHHHHHH
Q psy4083 294 YSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFEGAEIDKTYEKALETITSMGK 361 (374)
Q Consensus 294 Ys~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~~~~~~~~~~y~~~~~~i~~l~~ 361 (374)
....++..|++.+|++..-+-+.|.+|...|-|.-+.+..++ -..+.-.+........+..+.+|..
T Consensus 35 ~g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~~~~d~-~~~y~LT~~G~~l~~~l~~l~~w~~ 101 (146)
T 2f2e_A 35 EGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVPAESGS-HQEYRLTDKGRALFPLLVAIRQWGE 101 (146)
T ss_dssp TTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSSS-CEEEEECHHHHTTHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEecCCCC-eEEEEECchHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999988876666 3333333333323333444445543
No 249
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=71.47 E-value=4.8 Score=33.05 Aligned_cols=48 Identities=15% Similarity=0.182 Sum_probs=40.6
Q ss_pred HHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccc---eeecCC
Q psy4083 286 NLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFH---GILDQG 333 (374)
Q Consensus 286 ~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~---akID~~ 333 (374)
.++..+..-.+++...||+.+|+|...+-+.+.+|...|-+. +.+|..
T Consensus 13 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~ 63 (151)
T 2dbb_A 13 QLVKILSENSRLTYRELADILNTTRQRIARRIDKLKKLGIIRKFTIIPDID 63 (151)
T ss_dssp HHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEEEEEEECTG
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEecCChH
Confidence 455666667899999999999999999999999999999885 356754
No 250
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=71.20 E-value=5.4 Score=32.59 Aligned_cols=48 Identities=21% Similarity=0.209 Sum_probs=40.6
Q ss_pred HHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccc---eeecCC
Q psy4083 286 NLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFH---GILDQG 333 (374)
Q Consensus 286 ~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~---akID~~ 333 (374)
.++..+....+++...||+.+|+|...+-+.|.+|...|-|. +.+|+.
T Consensus 9 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 59 (144)
T 2cfx_A 9 NIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQK 59 (144)
T ss_dssp HHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEecccChh
Confidence 455666666889999999999999999999999999999886 357754
No 251
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=71.14 E-value=24 Score=28.11 Aligned_cols=43 Identities=12% Similarity=0.139 Sum_probs=36.3
Q ss_pred ccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCe
Q psy4083 294 YSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKV 336 (374)
Q Consensus 294 Ys~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~gi 336 (374)
...++...||+.+|++...+-+.|.+|...|-+.-.-|..++.
T Consensus 54 ~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~d~R 96 (150)
T 2rdp_A 54 EGDLTVGELSNKMYLACSTTTDLVDRMERNGLVARVRDEHDRR 96 (150)
T ss_dssp HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC---
T ss_pred cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCcc
Confidence 4579999999999999999999999999999998777665553
No 252
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=71.07 E-value=16 Score=28.13 Aligned_cols=37 Identities=11% Similarity=0.055 Sum_probs=33.8
Q ss_pred cceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeec
Q psy4083 295 SRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILD 331 (374)
Q Consensus 295 s~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID 331 (374)
..++...||+.+|++...+-+.|..|...|-+..+-|
T Consensus 37 ~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~ 73 (108)
T 2kko_A 37 GERAVEAIATATGMNLTTASANLQALKSGGLVEARRE 73 (108)
T ss_dssp CCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 5789999999999999999999999999999987654
No 253
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=70.91 E-value=26 Score=27.42 Aligned_cols=44 Identities=11% Similarity=0.096 Sum_probs=38.5
Q ss_pred cccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCe
Q psy4083 293 PYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKV 336 (374)
Q Consensus 293 pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~gi 336 (374)
....++...||+.+|++...+-+.+.+|...|-+.-..|..++.
T Consensus 45 ~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R 88 (138)
T 1jgs_A 45 CAACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKR 88 (138)
T ss_dssp HHSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTCSS
T ss_pred hcCCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEecCCcccCc
Confidence 34568999999999999999999999999999998877766664
No 254
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=70.57 E-value=2.6 Score=32.80 Aligned_cols=62 Identities=13% Similarity=0.060 Sum_probs=46.6
Q ss_pred ChHHHhhHHHHHHHHHHHHHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCcccee
Q psy4083 268 DTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGI 329 (374)
Q Consensus 268 D~~l~~h~~~L~~~ire~~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~ak 329 (374)
+|.+.+-+..++...+...+..+.+|=..++...||+.+|+|...|-+.|..|...|-+...
T Consensus 5 ~~~~~~~~~~~~~~~~l~Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 5 EDLFINLAKSLLGDDVIDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp TTHHHHHHHTTSCSTTHHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHHHcChHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 44444444445554455555555566557999999999999999999999999999998763
No 255
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=70.50 E-value=24 Score=27.81 Aligned_cols=52 Identities=10% Similarity=0.040 Sum_probs=41.9
Q ss_pred HHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEE
Q psy4083 287 LCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLI 338 (374)
Q Consensus 287 l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~ 338 (374)
++.++.....++...||+.+|++...+-+.|.+|...|-+.-.-|..++...
T Consensus 38 iL~~l~~~~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~~~~d~r~~ 89 (145)
T 2a61_A 38 ILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPADRRAY 89 (145)
T ss_dssp HHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEE
T ss_pred HHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCCceE
Confidence 3333333567999999999999999999999999999999887776666433
No 256
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=70.49 E-value=29 Score=26.38 Aligned_cols=37 Identities=11% Similarity=0.109 Sum_probs=33.7
Q ss_pred cceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeec
Q psy4083 295 SRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILD 331 (374)
Q Consensus 295 s~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID 331 (374)
..++...||+.+|++...+-+.|..|...|-+...-+
T Consensus 33 ~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~ 69 (114)
T 2oqg_A 33 ADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKV 69 (114)
T ss_dssp SCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEec
Confidence 4589999999999999999999999999999977655
No 257
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=70.49 E-value=17 Score=28.79 Aligned_cols=50 Identities=12% Similarity=0.220 Sum_probs=36.7
Q ss_pred HHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCe
Q psy4083 286 NLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKV 336 (374)
Q Consensus 286 ~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~gi 336 (374)
.++.++.... ++...||+.+|++..-+-+.|.+|...|-+.-.-|..++.
T Consensus 42 ~iL~~l~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~~~~d~R 91 (146)
T 3tgn_A 42 HILMLLSEES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSKDSKDAR 91 (146)
T ss_dssp HHHHHHTTCC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--------
T ss_pred HHHHHHHhCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeccCCCCCc
Confidence 3445555566 9999999999999999999999999999998877655554
No 258
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=70.26 E-value=14 Score=27.68 Aligned_cols=58 Identities=16% Similarity=0.114 Sum_probs=41.6
Q ss_pred cChHHHhhHHHHHHHHHHHHHHHhhcccc-ceeHHHHHhHhCCChHH-HHHHHHHHhhcCccc
Q psy4083 267 DDTIVKAHIGTLYDNMLEQNLCRIIEPYS-RVEVGFIAKSIKLDELA-VEKKLSQMILDKKFH 327 (374)
Q Consensus 267 ~D~~l~~h~~~L~~~ire~~l~~~~~pYs-~I~l~~lA~~l~ls~~~-vE~~L~~lI~dgkl~ 327 (374)
.|..+...+..+.+.+. ++.++.... .++...||+.+|++..- +-+.|.+|...|-+.
T Consensus 3 ~~~~l~~~~g~~~~~l~---~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~ 62 (95)
T 2pg4_A 3 DDETLRLQFGHLIRILP---TLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVK 62 (95)
T ss_dssp CCGGGGSBHHHHHHHHH---HHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEE
T ss_pred cHHHHHHHhhhHHHHHH---HHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHHCCCee
Confidence 34455544444444333 333333334 69999999999999999 999999999999887
No 259
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=70.17 E-value=19 Score=28.21 Aligned_cols=50 Identities=6% Similarity=0.088 Sum_probs=40.3
Q ss_pred HHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCe
Q psy4083 287 LCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKV 336 (374)
Q Consensus 287 l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~gi 336 (374)
++.++.....++...||+.+|++...+-+.|.+|...|-+.-.-|..++.
T Consensus 38 iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~r 87 (139)
T 3bja_A 38 VIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQR 87 (139)
T ss_dssp HHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSSCTT
T ss_pred HHHHHHHcCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeeccCCCCCc
Confidence 33444445679999999999999999999999999999998766665553
No 260
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=70.00 E-value=26 Score=27.75 Aligned_cols=42 Identities=10% Similarity=-0.001 Sum_probs=34.5
Q ss_pred ccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCC
Q psy4083 294 YSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEK 335 (374)
Q Consensus 294 Ys~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~g 335 (374)
...++...||+.+|++...+-+.|.+|...|-+.-.-|..++
T Consensus 48 ~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~~~~~d~ 89 (147)
T 2hr3_A 48 GGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADPQDG 89 (147)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC-----
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeCCCCCCC
Confidence 567999999999999999999999999999999876665444
No 261
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=69.88 E-value=26 Score=27.98 Aligned_cols=51 Identities=2% Similarity=0.018 Sum_probs=41.3
Q ss_pred HHHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCC
Q psy4083 285 QNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEK 335 (374)
Q Consensus 285 ~~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~g 335 (374)
..++.++.....++...||+.+|++...+-+.|.+|...|-+.-.-|..++
T Consensus 43 ~~iL~~l~~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~d~ 93 (152)
T 3bj6_A 43 RAILEGLSLTPGATAPQLGAALQMKRQYISRILQEVQRAGLIERRTNPEHA 93 (152)
T ss_dssp HHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCSSST
T ss_pred HHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecCCcccc
Confidence 344555555668999999999999999999999999999999876654444
No 262
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=69.86 E-value=20 Score=28.47 Aligned_cols=48 Identities=15% Similarity=0.095 Sum_probs=37.2
Q ss_pred HHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCC
Q psy4083 288 CRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEK 335 (374)
Q Consensus 288 ~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~g 335 (374)
+.++.....++...||+.+|++...+-+.|.+|...|-+.-.-|..++
T Consensus 43 L~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~ 90 (143)
T 3oop_A 43 LEGIEANEPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREISTEDR 90 (143)
T ss_dssp HHHHHHHSSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC----C
T ss_pred HHHHHHcCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccCCCccC
Confidence 333333467999999999999999999999999999999877655444
No 263
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=69.73 E-value=30 Score=28.03 Aligned_cols=70 Identities=10% Similarity=0.094 Sum_probs=53.1
Q ss_pred ccceeHHHHHhHh-CCChHHHHHHHHHHhhcCccceeecCCCCeEEEecCCcchHHHHHHHHHHHHHHHHH
Q psy4083 294 YSRVEVGFIAKSI-KLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFEGAEIDKTYEKALETITSMGKVI 363 (374)
Q Consensus 294 Ys~I~l~~lA~~l-~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~~~~~~~~~~y~~~~~~i~~l~~~v 363 (374)
....+++.|++.+ |++...+-+.|.+|..+|-+.-+.+..++.-+.+.-.+........+..+.+|+..-
T Consensus 37 ~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G~~l~~~l~~l~~W~~~~ 107 (131)
T 4a5n_A 37 DGKKRFNEFRRICPSITQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFGRTLEPIVLQMKEWGESN 107 (131)
T ss_dssp TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhHHHHHHHHHHHHHHHHHH
Confidence 4678999999999 999999999999999999998887776664444444444444555566677776543
No 264
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=69.68 E-value=27 Score=27.46 Aligned_cols=49 Identities=6% Similarity=0.040 Sum_probs=40.3
Q ss_pred HHHhh-ccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCC
Q psy4083 287 LCRII-EPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEK 335 (374)
Q Consensus 287 l~~~~-~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~g 335 (374)
++.++ .....++...||+.+|++...+-+.|.+|...|-+.-.-|..++
T Consensus 42 iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~~~~d~ 91 (146)
T 2fbh_A 42 VLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAEDR 91 (146)
T ss_dssp HHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCBTTB
T ss_pred HHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecCCCccc
Confidence 34444 55678999999999999999999999999999999876655444
No 265
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=69.34 E-value=39 Score=26.57 Aligned_cols=41 Identities=15% Similarity=0.163 Sum_probs=37.2
Q ss_pred cceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCC
Q psy4083 295 SRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEK 335 (374)
Q Consensus 295 s~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~g 335 (374)
..++...||+.+|+|..-+-+.|..|...|-+.-.-|+.++
T Consensus 40 ~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~~~~~d~ 80 (152)
T 1ku9_A 40 KPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVWIKGER 80 (152)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCS
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCc
Confidence 57999999999999999999999999999999887766654
No 266
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=68.95 E-value=33 Score=26.84 Aligned_cols=42 Identities=17% Similarity=0.124 Sum_probs=36.2
Q ss_pred cceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCe
Q psy4083 295 SRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKV 336 (374)
Q Consensus 295 s~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~gi 336 (374)
..++...||+.+|++...+-+.+.+|...|-+.-.-|..++.
T Consensus 46 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~D~R 87 (139)
T 3eco_A 46 DGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTR 87 (139)
T ss_dssp TCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--C
T ss_pred CCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCCCCCC
Confidence 389999999999999999999999999999998777766553
No 267
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=68.57 E-value=7.7 Score=31.91 Aligned_cols=51 Identities=14% Similarity=0.076 Sum_probs=38.8
Q ss_pred HHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEE
Q psy4083 287 LCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIV 339 (374)
Q Consensus 287 l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~ 339 (374)
+..+...+.. +.+.||+.+|+|+..+++.+..|...|-+...=. ..|..-.
T Consensus 15 L~~La~~~~~-s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~rG-~GGy~La 65 (145)
T 1xd7_A 15 LSLISMDEKT-SSEIIADSVNTNPVVVRRMISLLKKADILTSRAG-VPGASLK 65 (145)
T ss_dssp HHHHHTCSCC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSS-SSSCEES
T ss_pred HHHHHhCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCceEeecC-CCCceec
Confidence 3333333445 9999999999999999999999999999877555 4444443
No 268
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=68.37 E-value=30 Score=27.32 Aligned_cols=52 Identities=6% Similarity=0.137 Sum_probs=33.7
Q ss_pred HHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeE
Q psy4083 286 NLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVL 337 (374)
Q Consensus 286 ~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv 337 (374)
.++.++.....++...||+.+|++..-+-+.+.+|...|-+.-.-|..++..
T Consensus 41 ~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~DrR~ 92 (142)
T 3ech_A 41 HVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQRS 92 (142)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC---------
T ss_pred HHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeccCCCCCCe
Confidence 3444444456799999999999999999999999999999988777666543
No 269
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=68.06 E-value=6.2 Score=33.54 Aligned_cols=47 Identities=15% Similarity=0.288 Sum_probs=39.9
Q ss_pred HHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccc---eeecC
Q psy4083 286 NLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFH---GILDQ 332 (374)
Q Consensus 286 ~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~---akID~ 332 (374)
.|+..+..-.+++...||+.+|+|...+-+.|.+|...|.|. +.+|+
T Consensus 31 ~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~~~a~vd~ 80 (171)
T 2e1c_A 31 KIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDP 80 (171)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCG
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeeEEECH
Confidence 455556656799999999999999999999999999999885 46675
No 270
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=67.95 E-value=9.3 Score=30.48 Aligned_cols=45 Identities=16% Similarity=0.066 Sum_probs=34.7
Q ss_pred cceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEE
Q psy4083 295 SRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIV 339 (374)
Q Consensus 295 s~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~ 339 (374)
..++...||+.+|+|...+.+.+..|...|-+...=....|....
T Consensus 25 ~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~~g~~ggy~L~ 69 (129)
T 2y75_A 25 GPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRGAYGGYVLG 69 (129)
T ss_dssp CCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC----CCEEES
T ss_pred CcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEecCCCCCceEeC
Confidence 568999999999999999999999999999886643333444443
No 271
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=67.79 E-value=30 Score=27.97 Aligned_cols=49 Identities=10% Similarity=0.191 Sum_probs=38.7
Q ss_pred HHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCC
Q psy4083 287 LCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEK 335 (374)
Q Consensus 287 l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~g 335 (374)
++.++.....++...||+.+|++..-+-+.|.+|...|-+.-.-|..++
T Consensus 57 iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~ 105 (162)
T 3cjn_A 57 ALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDSDDQ 105 (162)
T ss_dssp HHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--CC
T ss_pred HHHHHHHCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEecCCCCCC
Confidence 3344444567999999999999999999999999999999876655444
No 272
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=67.48 E-value=27 Score=28.47 Aligned_cols=51 Identities=8% Similarity=0.067 Sum_probs=42.3
Q ss_pred HHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCe
Q psy4083 286 NLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKV 336 (374)
Q Consensus 286 ~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~gi 336 (374)
.++.++.....++...||+.+|++..-+-+.|.+|...|-+.-.-|..++.
T Consensus 50 ~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR 100 (162)
T 3k0l_A 50 TALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHGR 100 (162)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSSC
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecCCCCcCC
Confidence 344444445689999999999999999999999999999998887776663
No 273
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=67.30 E-value=29 Score=28.09 Aligned_cols=43 Identities=7% Similarity=0.173 Sum_probs=36.4
Q ss_pred cccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCC
Q psy4083 293 PYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEK 335 (374)
Q Consensus 293 pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~g 335 (374)
....++...||+.+|++..-+-+.+.+|...|-+.-.-|..++
T Consensus 61 ~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~Dr 103 (159)
T 3s2w_A 61 REDGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQRDEKDR 103 (159)
T ss_dssp HSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC---
T ss_pred HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCC
Confidence 3467999999999999999999999999999999887766665
No 274
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=66.92 E-value=32 Score=28.25 Aligned_cols=47 Identities=6% Similarity=0.147 Sum_probs=39.4
Q ss_pred HhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCC
Q psy4083 289 RIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEK 335 (374)
Q Consensus 289 ~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~g 335 (374)
.++.....++...||+.+|++..-+-+.|.+|...|-+.-.-|..++
T Consensus 52 ~~L~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~Dr 98 (168)
T 2nyx_A 52 VILSNHGPINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHPTSR 98 (168)
T ss_dssp HHHHHHCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCS
T ss_pred HHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeccCCCCC
Confidence 33333457999999999999999999999999999999887776555
No 275
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=66.88 E-value=35 Score=26.95 Aligned_cols=87 Identities=14% Similarity=0.016 Sum_probs=59.8
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhhccccCCChhhhH
Q psy4083 124 LIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHA----LSNLSTSRASLTSARTTANSIYCPPKMQA 199 (374)
Q Consensus 124 La~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~----~~n~~~a~~~~~~a~~~~~~~~~~~~~~~ 199 (374)
|+.+|...+.+++|++.+.+... ..+ .+-+..--.+|.. .+|+.++..++.+|-.. .+|.-+
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~----~g~----~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-----g~~~a~- 96 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACE----LNS----GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-----NDQDGC- 96 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHH----TTC----HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-----TCHHHH-
T ss_pred HHHHHHcCCCHHHHHHHHHHHHc----CCC----HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC-----CCHHHH-
Confidence 78888888889998777665542 112 2334444566666 78999999999998543 333322
Q ss_pred HHHHHHHHHhhcc----cccHHHHHHHHHHhcc
Q psy4083 200 ALDLQSGILHAAD----EQDFKTAFSYFYEAFE 228 (374)
Q Consensus 200 ~i~~~~G~~~~~~----~rdy~~A~~~F~eaf~ 228 (374)
..-|.++. . .+|+.+|..+|-.+.+
T Consensus 97 ---~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 97 ---LILGYKQY-AGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp ---HHHHHHHH-HTSSSCCCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHH-CCCCCCcCHHHHHHHHHHHHH
Confidence 22355666 5 8999999999998865
No 276
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.32 E-value=97 Score=29.90 Aligned_cols=102 Identities=18% Similarity=0.110 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHH-HHH
Q psy4083 40 NILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTF-LRQ 118 (374)
Q Consensus 40 ~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~-lr~ 118 (374)
+...+|+++++.|+++++.+.+..++...... +.++.-.+..|=-.+. ..+ ...-...+ ..+.....++.-| .+.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~-~~kid~~l~~irl~l~-~~d-~~~~~~~~-~ka~~~~~~~~d~~~~~ 208 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAIST-GAKIDVMLTIARLGFF-YND-QLYVKEKL-EAVNSMIEKGGDWERRN 208 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCC-CSHHHHHHHHHHHHHH-HTC-HHHHHHHH-HHHHHHHTTCCCTHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHH-hcc-HHHHHHHH-HHHHHhhhcCCCHHHHH
Confidence 45678999999999999999999999988665 4444432222211111 011 11111111 1111111111112 133
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHH
Q psy4083 119 SLEARLIALYFDTGEYTEALKLSSSLL 145 (374)
Q Consensus 119 ~l~~kLa~~~~~~g~~~~Al~~~~~ll 145 (374)
++..--|.++...++|.+|.+.+-++.
T Consensus 209 ~lk~~~gl~~l~~r~f~~Aa~~f~e~~ 235 (429)
T 4b4t_R 209 RYKTYYGIHCLAVRNFKEAAKLLVDSL 235 (429)
T ss_dssp HHHHHHHHGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHh
Confidence 443345667788899999966554443
No 277
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=65.88 E-value=41 Score=31.00 Aligned_cols=97 Identities=13% Similarity=0.048 Sum_probs=70.2
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHHH
Q psy4083 124 LIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALDL 203 (374)
Q Consensus 124 La~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~~ 203 (374)
++.++++.|+|++|+..+.+.. ...++...-++++.--..+..+|++..+...+.++..- ..+|........
T Consensus 141 ~a~l~~~~~r~~dA~~~l~~a~----~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g----~~~P~~~~da~~ 212 (282)
T 4f3v_A 141 KAVVYGAAERWTDVIDQVKSAG----KWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDS----PAGEACARAIAW 212 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHTTGG----GCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----TTTTTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHhh----ccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC----CCCccccHHHHH
Confidence 6778999999999976664332 11233334567777888899999999999999987522 122543444556
Q ss_pred HHHHHhhcccccHHHHHHHHHHhccC
Q psy4083 204 QSGILHAADEQDFKTAFSYFYEAFEG 229 (374)
Q Consensus 204 ~~G~~~~~~~rdy~~A~~~F~eaf~~ 229 (374)
+.|.... ..|+..+|...|=.+...
T Consensus 213 ~~glaL~-~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 213 YLAMARR-SQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHH-HHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HcCCHHHHHHHHHHHHhc
Confidence 7788888 899999999999887653
No 278
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=65.35 E-value=20 Score=30.56 Aligned_cols=67 Identities=15% Similarity=0.083 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhccc--cCCChhhhHHHHHHHHHHhhcccccHHHHHHHHHHhc
Q psy4083 160 VLLLESKTYHALSNLSTSRASLTSARTTANS--IYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAF 227 (374)
Q Consensus 160 v~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~--~~~~~~~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf 227 (374)
.++.+++..+..+-|.-+..+...+.+..+. ....|........+-|..++ .+|+|.+|...|-.|.
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf-~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLF-HDKEYRNAVSKYTMAL 90 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHH
Confidence 4567788888888888888777776555422 23468888899999999999 9999999999999974
No 279
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=65.27 E-value=41 Score=26.94 Aligned_cols=48 Identities=8% Similarity=0.045 Sum_probs=39.0
Q ss_pred HHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCC
Q psy4083 288 CRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEK 335 (374)
Q Consensus 288 ~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~g 335 (374)
+.++.....++...||+.+|++...+-+.|.+|...|-+.-.-|..++
T Consensus 50 L~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~ 97 (154)
T 2eth_A 50 FLYVALFGPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDR 97 (154)
T ss_dssp HHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTS
T ss_pred HHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCc
Confidence 333333447999999999999999999999999999999877665554
No 280
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=65.24 E-value=7.4 Score=31.97 Aligned_cols=47 Identities=15% Similarity=0.288 Sum_probs=39.2
Q ss_pred HHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccc---eeecC
Q psy4083 286 NLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFH---GILDQ 332 (374)
Q Consensus 286 ~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~---akID~ 332 (374)
.++..+..-.+++...||+.+|+|...+-+.+.+|...|-|. +.+|+
T Consensus 11 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~ 60 (151)
T 2cyy_A 11 KIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDP 60 (151)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCCCCCCCG
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEEEECH
Confidence 345555556789999999999999999999999999999885 45664
No 281
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=65.08 E-value=9.4 Score=31.14 Aligned_cols=48 Identities=13% Similarity=0.332 Sum_probs=40.4
Q ss_pred HHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccce---eecCC
Q psy4083 286 NLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHG---ILDQG 333 (374)
Q Consensus 286 ~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~a---kID~~ 333 (374)
.++..+..-.+++...||+.+|+|...+-+.|.+|...|-|.. .+|+.
T Consensus 7 ~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 57 (150)
T 2pn6_A 7 RILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKGYYAYINPA 57 (150)
T ss_dssp HHHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCGG
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEEeecCHH
Confidence 4555666667899999999999999999999999999998864 67753
No 282
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=64.93 E-value=9.9 Score=30.56 Aligned_cols=43 Identities=26% Similarity=0.309 Sum_probs=36.6
Q ss_pred HHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccce
Q psy4083 286 NLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHG 328 (374)
Q Consensus 286 ~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~a 328 (374)
.++..+..-.+++...||+.+|+|...+-+.|.+|...|-+..
T Consensus 8 ~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 50 (141)
T 1i1g_A 8 IILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIEG 50 (141)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEec
Confidence 3445555567899999999999999999999999999998854
No 283
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=64.40 E-value=29 Score=27.43 Aligned_cols=50 Identities=10% Similarity=0.105 Sum_probs=39.1
Q ss_pred HHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCC
Q psy4083 286 NLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEK 335 (374)
Q Consensus 286 ~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~g 335 (374)
.++.++.....++...||+.+|++...+-+.+.+|...|-+.-.-|..++
T Consensus 40 ~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~D~ 89 (140)
T 3hsr_A 40 IVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDE 89 (140)
T ss_dssp HHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-----
T ss_pred HHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEecCCCCCc
Confidence 44455555678999999999999999999999999999999887766655
No 284
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=64.12 E-value=34 Score=27.40 Aligned_cols=50 Identities=12% Similarity=0.108 Sum_probs=38.6
Q ss_pred HHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCC
Q psy4083 286 NLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEK 335 (374)
Q Consensus 286 ~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~g 335 (374)
.++.++.....++...||+.+|++..-+-+.|.+|...|-+.-.-|..++
T Consensus 47 ~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~d~ 96 (155)
T 3cdh_A 47 RVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVADAKDK 96 (155)
T ss_dssp HHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC-----
T ss_pred HHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCcC
Confidence 44555555678999999999999999999999999999999766554444
No 285
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=64.11 E-value=67 Score=27.30 Aligned_cols=96 Identities=11% Similarity=0.024 Sum_probs=59.4
Q ss_pred HHHhccCHHHHHHHHHHHHHHHHHh-c--cchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCCh--------
Q psy4083 127 LYFDTGEYTEALKLSSSLLKELKKL-D--DKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPP-------- 195 (374)
Q Consensus 127 ~~~~~g~~~~Al~~~~~ll~el~~~-d--d~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~-------- 195 (374)
-+++.|.|+.|.-+..-++.-.+.- + .+....++...-...++..++|.+|..+|.+|.+....+...+
T Consensus 29 ~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~ 108 (167)
T 3ffl_A 29 DMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGN 108 (167)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------------
T ss_pred HHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccc
Confidence 4556788998866554444322221 1 3567888888889999999999999999999744332211111
Q ss_pred --------hhh--HHHHHHHHHHhhcccccHHHHHHHH
Q psy4083 196 --------KMQ--AALDLQSGILHAADEQDFKTAFSYF 223 (374)
Q Consensus 196 --------~~~--~~i~~~~G~~~~~~~rdy~~A~~~F 223 (374)
.+. ..++---+.-|+ ..+++..|....
T Consensus 109 ~ss~p~s~~~~~e~Elkykia~C~~-~l~~~~~Ai~~L 145 (167)
T 3ffl_A 109 SASTPQSQCLPSEIEVKYKLAECYT-VLKQDKDAIAIL 145 (167)
T ss_dssp --------CCCCHHHHHHHHHHHHH-HTTCHHHHHHHH
T ss_pred cCCCcccccccchHHHHHHHHHHHH-HHCCHHHHHHHH
Confidence 011 134444555566 778888887653
No 286
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=63.67 E-value=10 Score=33.79 Aligned_cols=64 Identities=6% Similarity=0.073 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHHHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEE
Q psy4083 274 HIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIV 339 (374)
Q Consensus 274 h~~~L~~~ire~~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~ 339 (374)
....+++.|+...+...+.|=.+++...||+.||+|...|-+-|..|-.+|-+.- -+..|+.+.
T Consensus 27 ~~~~v~~~L~~~I~~g~l~pG~~L~e~~La~~lgVSr~~VReAL~~L~~~Glv~~--~~~~G~~V~ 90 (237)
T 3c7j_A 27 ARTVIEEKLRNAIIDGSLPSGTALRQQELATLFGVSRMPVREALRQLEAQSLLRV--ETHKGAVVA 90 (237)
T ss_dssp HHHHHHHHHHHHHHTSSSCTTCBCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE--ETTTEEEEC
T ss_pred cHHHHHHHHHHHHHhCCCCCcCeeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE--eCCCceEEe
Confidence 3455889999988888999999999999999999999999999999999998753 344566554
No 287
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=63.66 E-value=31 Score=29.93 Aligned_cols=63 Identities=11% Similarity=0.125 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEE
Q psy4083 275 IGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIV 339 (374)
Q Consensus 275 ~~~L~~~ire~~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~ 339 (374)
.+.+++.+++..+..-+.|=++++-..||+.||+|...|-+-|..|-.+|-+.-+ +..|+.+.
T Consensus 14 ~~~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~--~~~G~~V~ 76 (218)
T 3sxy_A 14 RTKVYNLLKEMILNHELKLGEKLNVRELSEKLGISFTPVRDALLQLATEGLVKVV--PRVGFFVT 76 (218)
T ss_dssp CHHHHHHHHHHHHTTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE--TTTEEEEC
T ss_pred HHHHHHHHHHHHHhCCCCCCCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe--CCCceEEc
Confidence 3567888999999999999999999999999999999999999999999998554 55677665
No 288
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=63.55 E-value=23 Score=28.17 Aligned_cols=54 Identities=7% Similarity=-0.008 Sum_probs=41.9
Q ss_pred HHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCC---eEEEe
Q psy4083 287 LCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEK---VLIVF 340 (374)
Q Consensus 287 l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~g---iv~~~ 340 (374)
++.++.....++...||+.+|++...+-+.|.+|...|-+.-.-|..++ .|...
T Consensus 36 iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT 92 (145)
T 3g3z_A 36 VLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLT 92 (145)
T ss_dssp HHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEEC
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEC
Confidence 3344434456999999999999999999999999999999876665554 44443
No 289
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=63.39 E-value=18 Score=29.53 Aligned_cols=57 Identities=9% Similarity=-0.007 Sum_probs=43.6
Q ss_pred ccceeHHHHHhHhCCChHHHHHHHHHHhhcCccce--eecCCCCeEEEecCCcchHHHHHHH
Q psy4083 294 YSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHG--ILDQGEKVLIVFEGAEIDKTYEKAL 353 (374)
Q Consensus 294 Ys~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~a--kID~~~giv~~~~~~~~~~~y~~~~ 353 (374)
..-.+.+.||+.+|+++.+|.+.|.+|+..|-|.= +.|..++....++- +..|+...
T Consensus 49 ~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~~~~ydL---~pL~ekL~ 107 (135)
T 2v79_A 49 SYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQNGIKFEKYSL---QPLWGKLY 107 (135)
T ss_dssp CCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEECTTCCEEEEEEC---HHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEecCCCceEEEeeH---HHHHHHHH
Confidence 35578999999999999999999999999998864 66776655555544 34454433
No 290
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=63.22 E-value=25 Score=28.40 Aligned_cols=49 Identities=10% Similarity=0.235 Sum_probs=35.9
Q ss_pred HHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCC
Q psy4083 287 LCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEK 335 (374)
Q Consensus 287 l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~g 335 (374)
++.++.....++...||+.+|++...+-+.|.+|...|-+.-.-|..++
T Consensus 54 iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~~~~d~ 102 (162)
T 2fa5_A 54 VITILALYPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRETHGDDR 102 (162)
T ss_dssp HHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-------
T ss_pred HHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeecCCCCC
Confidence 3444444568999999999999999999999999999998776655444
No 291
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=63.15 E-value=42 Score=28.29 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=39.5
Q ss_pred cccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCe
Q psy4083 293 PYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKV 336 (374)
Q Consensus 293 pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~gi 336 (374)
|...++...||+.+|++..-+-+.|.+|...|-|.-.-|..++.
T Consensus 54 ~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR 97 (189)
T 3nqo_A 54 PEEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIPSPHDKR 97 (189)
T ss_dssp CGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSS
T ss_pred cCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCCCC
Confidence 45689999999999999999999999999999998888777663
No 292
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=62.83 E-value=7.5 Score=28.97 Aligned_cols=44 Identities=18% Similarity=0.183 Sum_probs=38.5
Q ss_pred HHHHHhhccccceeHHHHHhHhCCChH-HHHHHHHHHhhcCccce
Q psy4083 285 QNLCRIIEPYSRVEVGFIAKSIKLDEL-AVEKKLSQMILDKKFHG 328 (374)
Q Consensus 285 ~~l~~~~~pYs~I~l~~lA~~l~ls~~-~vE~~L~~lI~dgkl~a 328 (374)
.-|+.+++--...+...||+.||++.. .|-+.|..|-.+|-+..
T Consensus 14 ~~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~ 58 (79)
T 1xmk_A 14 EKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQGDVYR 58 (79)
T ss_dssp HHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEEe
Confidence 344477777788999999999999999 99999999999999873
No 293
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=61.89 E-value=10 Score=31.03 Aligned_cols=48 Identities=15% Similarity=0.157 Sum_probs=39.6
Q ss_pred HHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccc---eeecCC
Q psy4083 286 NLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFH---GILDQG 333 (374)
Q Consensus 286 ~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~---akID~~ 333 (374)
.++.++..-.+++...||+.+|+|...+-+.|.+|...|-+. +.+|+.
T Consensus 11 ~iL~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 61 (150)
T 2w25_A 11 ILVRELAADGRATLSELATRAGLSVSAVQSRVRRLESRGVVQGYSARINPE 61 (150)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEeccChh
Confidence 344555556789999999999999999999999999999884 456654
No 294
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=61.58 E-value=50 Score=25.95 Aligned_cols=52 Identities=10% Similarity=0.218 Sum_probs=41.7
Q ss_pred HHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEE
Q psy4083 287 LCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIV 339 (374)
Q Consensus 287 l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~ 339 (374)
++.++..... +...||+.+|++..-+-+.|.+|...|-+.-.-|..++....
T Consensus 42 iL~~l~~~~~-~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~ 93 (144)
T 3f3x_A 42 ILKATSEEPR-SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDSKDRRIVI 93 (144)
T ss_dssp HHHHHHHSCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred HHHHHHHCCC-CHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccCCCCCceEE
Confidence 3333433444 999999999999999999999999999999888877764433
No 295
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=61.41 E-value=31 Score=27.43 Aligned_cols=45 Identities=16% Similarity=0.093 Sum_probs=36.5
Q ss_pred cccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEEe
Q psy4083 293 PYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVF 340 (374)
Q Consensus 293 pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~~ 340 (374)
....++...||+.+|++..-|-+.|..|...|-+.-. ..+.+...
T Consensus 19 ~~~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~---~~~~~~LT 63 (142)
T 1on2_A 19 EKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYE---KYRGLVLT 63 (142)
T ss_dssp HHSSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE---TTTEEEEC
T ss_pred hcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe---eCceEEEc
Confidence 3456999999999999999999999999999887654 23555554
No 296
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=61.33 E-value=26 Score=27.85 Aligned_cols=49 Identities=18% Similarity=0.199 Sum_probs=35.9
Q ss_pred HHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCC
Q psy4083 287 LCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEK 335 (374)
Q Consensus 287 l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~g 335 (374)
++.++.....++...||+.+|++..-+-+.|.+|...|-+.-.-|..++
T Consensus 45 iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~ 93 (148)
T 3nrv_A 45 IISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDK 93 (148)
T ss_dssp HHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-------
T ss_pred HHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCc
Confidence 3344444568999999999999999999999999999998776655544
No 297
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=61.30 E-value=35 Score=26.69 Aligned_cols=40 Identities=10% Similarity=0.067 Sum_probs=36.0
Q ss_pred ceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCC
Q psy4083 296 RVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEK 335 (374)
Q Consensus 296 ~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~g 335 (374)
.++...||+.+|++...+-+.|.+|...|-+.-.-|..++
T Consensus 50 ~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~d~ 89 (141)
T 3bro_A 50 EVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSGKDS 89 (141)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred CcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeCCCcCC
Confidence 7999999999999999999999999999999877665554
No 298
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=61.25 E-value=11 Score=32.66 Aligned_cols=47 Identities=4% Similarity=0.051 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcC
Q psy4083 278 LYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDK 324 (374)
Q Consensus 278 L~~~ire~~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dg 324 (374)
+.++=|.+.|+++++.-..|+.+.||+.||+|++-+.+.|.+|=..+
T Consensus 8 m~k~eR~~~i~~~l~~~~~~~~~~la~~~~vs~~TiRrDl~eL~~~~ 54 (190)
T 4a0z_A 8 LKKDKRREAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLNIPE 54 (190)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHTCCC
T ss_pred cCHHHHHHHHHHHHHHCCCEeHHHHHHHHCCCHHHHHHHHHHhcCcc
Confidence 45667889999999999999999999999999999999998875544
No 299
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=61.23 E-value=19 Score=29.53 Aligned_cols=48 Identities=13% Similarity=0.068 Sum_probs=38.0
Q ss_pred cceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEEecCC
Q psy4083 295 SRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFEGA 343 (374)
Q Consensus 295 s~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~~~~~ 343 (374)
..++.+.||+.+|+|...+++.+..|...|-+..+=....|.. ..+++
T Consensus 27 ~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~-Lar~p 74 (143)
T 3t8r_A 27 GCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRGAKGGYQ-LRVPA 74 (143)
T ss_dssp CCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECSSSSSEEE-ESSCG
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEecCCCCCCee-ecCCc
Confidence 3699999999999999999999999999998876544444444 43443
No 300
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=61.00 E-value=29 Score=27.29 Aligned_cols=50 Identities=18% Similarity=0.084 Sum_probs=40.9
Q ss_pred HHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCC
Q psy4083 286 NLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEK 335 (374)
Q Consensus 286 ~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~g 335 (374)
.++.++.....++...||+.+|++...+-+.|.+|...|-+.-.-|..++
T Consensus 41 ~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~ 90 (142)
T 2bv6_A 41 LVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQ 90 (142)
T ss_dssp HHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSSST
T ss_pred HHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCc
Confidence 34444444567999999999999999999999999999999877765554
No 301
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=60.74 E-value=41 Score=26.03 Aligned_cols=81 Identities=11% Similarity=0.076 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhhccccceeHHHHHhHh-CCChHHHHHHHHHHhhcCccceeecCCCCeEEEecCCcchHHHHHHHHHHHH
Q psy4083 280 DNMLEQNLCRIIEPYSRVEVGFIAKSI-KLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFEGAEIDKTYEKALETITS 358 (374)
Q Consensus 280 ~~ire~~l~~~~~pYs~I~l~~lA~~l-~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~~~~~~~~~~y~~~~~~i~~ 358 (374)
+.-+-..+..+...=.++++..|++.+ |++..-+-+.|..|...|-+.-+.+ ....+.. .+........+..+..
T Consensus 26 ~~wrl~IL~~L~~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~-r~~~y~L---T~~G~~l~~~l~~l~~ 101 (111)
T 3df8_A 26 KKYTMLIISVLGNGSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSG-QITTYAL---TEKGMNVRNSLMPLLQ 101 (111)
T ss_dssp STTHHHHHHHHTSSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEES-SSEEEEE---CHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHhcCCCCCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEeec-CcEEEEE---CccHHHHHHHHHHHHH
Confidence 333444444444322345699999999 9999999999999999999998888 3322322 2234444455666677
Q ss_pred HHHHHH
Q psy4083 359 MGKVID 364 (374)
Q Consensus 359 l~~~vd 364 (374)
|....+
T Consensus 102 w~~~~~ 107 (111)
T 3df8_A 102 YISVLD 107 (111)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 776543
No 302
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=60.29 E-value=37 Score=27.56 Aligned_cols=54 Identities=11% Similarity=0.255 Sum_probs=40.2
Q ss_pred HHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCC---eEEEe
Q psy4083 287 LCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEK---VLIVF 340 (374)
Q Consensus 287 l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~g---iv~~~ 340 (374)
++.++.....++...||+.+|++..-+-+.|.+|...|-+.-.-|..++ .|...
T Consensus 58 vL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT 114 (161)
T 3e6m_A 58 LLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLT 114 (161)
T ss_dssp HHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEEC
T ss_pred HHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeEC
Confidence 3333333458999999999999999999999999999999877665554 44443
No 303
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=59.82 E-value=52 Score=24.59 Aligned_cols=57 Identities=11% Similarity=0.164 Sum_probs=42.2
Q ss_pred HHHHHHHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEE
Q psy4083 281 NMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIV 339 (374)
Q Consensus 281 ~ire~~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~ 339 (374)
..|.+.+..+.+ ...+...||+.+|++...+-..|..|...|-+..+-+........
T Consensus 23 ~~r~~Il~~L~~--~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l 79 (102)
T 3pqk_A 23 PVRLMLVCTLVE--GEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRNIKQIFYRL 79 (102)
T ss_dssp HHHHHHHHHHHT--CCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEECSSSCCEEEE
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEE
Confidence 344444444433 458999999999999999999999999999998765544434433
No 304
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=59.55 E-value=25 Score=30.66 Aligned_cols=63 Identities=10% Similarity=0.055 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEE
Q psy4083 275 IGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIV 339 (374)
Q Consensus 275 ~~~L~~~ire~~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~ 339 (374)
.+.+++.|++..+..-+.|=+++.-..||+.||+|...|-+-|..|-.+|-+.-+ +..|+.+.
T Consensus 18 ~~~v~~~l~~~I~~g~l~pG~~L~E~~La~~lgVSRtpVREAl~~L~~eGlv~~~--~~~G~~V~ 80 (222)
T 3ihu_A 18 SDTVFFGIMSGLELGTFVPGQRLVETDLVAHFGVGRNSVREALQRLAAEGIVDLQ--RHRGAVIR 80 (222)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC--STTCEEEC
T ss_pred HHHHHHHHHHHHHhCCCCCCCccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe--cCCCeEEe
Confidence 4667888999999999999999999999999999999999999999999988653 55677665
No 305
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=58.84 E-value=22 Score=31.86 Aligned_cols=62 Identities=10% Similarity=0.115 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHhhccccce-eHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEEec
Q psy4083 275 IGTLYDNMLEQNLCRIIEPYSRV-EVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFE 341 (374)
Q Consensus 275 ~~~L~~~ire~~l~~~~~pYs~I-~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~~~ 341 (374)
+..+++.++.+.. . +.|=+.+ +-..||+.||+|..-|.+-|..|..+|-|.. +..|+.+...
T Consensus 16 y~~i~~~l~~~I~-~-~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~---~g~Gt~V~~~ 78 (248)
T 3f8m_A 16 HQVVRAELDRMLD-G-MRIGDPFPAEREIAEQFEVARETVRQALRELLIDGRVER---RGRTTVVARP 78 (248)
T ss_dssp HHHHHHHHHHHHH-H-CCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE---ETTEEEECCC
T ss_pred HHHHHHHHHHHHh-C-CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe---CCCEEEEccC
Confidence 4567777777666 6 8888999 9999999999999999999999999999965 7778777643
No 306
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=58.16 E-value=65 Score=25.17 Aligned_cols=50 Identities=10% Similarity=-0.049 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceee
Q psy4083 280 DNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGIL 330 (374)
Q Consensus 280 ~~ire~~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akI 330 (374)
+..|.+.+..+. .-..++...||+.+|+|..-+-+.|..|...|-+...-
T Consensus 41 ~~~rl~IL~~L~-~~~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~~ 90 (122)
T 1u2w_A 41 DENRAKITYALC-QDEELCVCDIANILGVTIANASHHLRTLYKQGVVNFRK 90 (122)
T ss_dssp SHHHHHHHHHHH-HSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC-
T ss_pred CHHHHHHHHHHH-HCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE
Confidence 333444444333 23568999999999999999999999999999887643
No 307
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=58.07 E-value=27 Score=29.28 Aligned_cols=45 Identities=13% Similarity=0.109 Sum_probs=37.7
Q ss_pred cceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEE
Q psy4083 295 SRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIV 339 (374)
Q Consensus 295 s~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~ 339 (374)
..++.+.||+.+|+|+..+++.+..|...|-+..+=....|..-.
T Consensus 43 ~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~La 87 (159)
T 3lwf_A 43 GPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGGYVLN 87 (159)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSTTCEEEEC
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCCCCceEec
Confidence 359999999999999999999999999999988765554555544
No 308
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=58.02 E-value=28 Score=27.86 Aligned_cols=49 Identities=10% Similarity=0.224 Sum_probs=37.0
Q ss_pred HHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccce--eecCCCC
Q psy4083 286 NLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHG--ILDQGEK 335 (374)
Q Consensus 286 ~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~a--kID~~~g 335 (374)
.++.++ ....++...||+.+|++..-+-+.|.+|...|-+.- ..|..++
T Consensus 42 ~iL~~l-~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~ 92 (151)
T 3kp7_A 42 HVLNML-SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKLEKPDSNTDQ 92 (151)
T ss_dssp HHHHHH-HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC---------
T ss_pred HHHHHH-HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCC
Confidence 344555 678899999999999999999999999999999986 3355555
No 309
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=57.99 E-value=19 Score=26.88 Aligned_cols=44 Identities=16% Similarity=0.118 Sum_probs=36.1
Q ss_pred eeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEEe
Q psy4083 297 VEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVF 340 (374)
Q Consensus 297 I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~~ 340 (374)
++...||+.+|++..-+-+.|..|...|-+...-|.-...+...
T Consensus 31 ~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT 74 (95)
T 2qvo_A 31 VYIQYIASKVNSPHSYVWLIIKKFEEAKMVECELEGRTKIIRLT 74 (95)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEC
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCcCccCCCCCCeEEEEEC
Confidence 99999999999999999999999999999944445444455553
No 310
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=57.63 E-value=18 Score=28.40 Aligned_cols=49 Identities=8% Similarity=0.082 Sum_probs=40.0
Q ss_pred HHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCC
Q psy4083 287 LCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEK 335 (374)
Q Consensus 287 l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~g 335 (374)
++..+.....++...||+.+|++...+-+.|.+|...|-+.-.-|..++
T Consensus 36 iL~~l~~~~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~~~~d~ 84 (142)
T 3bdd_A 36 ILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQ 84 (142)
T ss_dssp HHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSST
T ss_pred HHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCC
Confidence 3344444567999999999999999999999999999999877765544
No 311
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=57.39 E-value=96 Score=32.15 Aligned_cols=104 Identities=18% Similarity=0.132 Sum_probs=71.0
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHh-c-----cc----------hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKL-D-----DK----------NLLVEVLLLESKTYHALSNLSTSRASLTSART 186 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~-d-----d~----------~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~ 186 (374)
.++.+....|++++|-+++.+++..+... . .+ ...-.+++.-+++....++...|++.+..|++
T Consensus 383 ~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~ 462 (679)
T 4e6h_A 383 SLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR 462 (679)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46777888899999999988888765321 0 01 02334677777887888999999999999976
Q ss_pred hccccCCChhhhHHHHHHHHHHhhcccccHHHHHHHHHHhccCcCc
Q psy4083 187 TANSIYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEGFST 232 (374)
Q Consensus 187 ~~~~~~~~~~~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~f~~ 232 (374)
.. |.....+....+.+.....++++.|...|-.+.+.|..
T Consensus 463 ~~------~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~ 502 (679)
T 4e6h_A 463 LK------KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFAT 502 (679)
T ss_dssp TG------GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT
T ss_pred hc------CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC
Confidence 51 11123344455655541346699999999988887654
No 312
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=56.50 E-value=20 Score=26.80 Aligned_cols=35 Identities=9% Similarity=0.053 Sum_probs=31.9
Q ss_pred cceeHHHHHhHhCCChHHHHHHHHHHhhcCcccee
Q psy4083 295 SRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGI 329 (374)
Q Consensus 295 s~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~ak 329 (374)
..++...||+.+|+|..-|-+.|..|...|-+...
T Consensus 42 ~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~ 76 (96)
T 1y0u_A 42 KGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERV 76 (96)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 45899999999999999999999999999988753
No 313
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=56.34 E-value=28 Score=25.66 Aligned_cols=40 Identities=5% Similarity=0.162 Sum_probs=35.1
Q ss_pred hhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCcccee
Q psy4083 290 IIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGI 329 (374)
Q Consensus 290 ~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~ak 329 (374)
.+.+=...+...||+.||++...|-+.|..|=..|.+...
T Consensus 23 ~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~~~ 62 (75)
T 1sfu_A 23 SLNTNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMV 62 (75)
T ss_dssp TSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hCCCCcchHHHHHHHHHCCCHHHHHHHHHHHHHCCCEecC
Confidence 5555566999999999999999999999999999988654
No 314
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=56.33 E-value=29 Score=30.99 Aligned_cols=64 Identities=11% Similarity=0.161 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHhhccccce-eHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEEe
Q psy4083 275 IGTLYDNMLEQNLCRIIEPYSRV-EVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVF 340 (374)
Q Consensus 275 ~~~L~~~ire~~l~~~~~pYs~I-~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~~ 340 (374)
...+++.++.+....-+.|=..+ +...||+.||+|..-|.+-|..|..+|-|..+ +..|+.+..
T Consensus 12 ~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~g~G~~V~~ 76 (243)
T 2wv0_A 12 YYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRL--KGRGTFVSK 76 (243)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC--TTSCEEECC
T ss_pred HHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEe--CCCeEEEeC
Confidence 45677777777777778888899 89999999999999999999999999988653 556777653
No 315
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=55.46 E-value=24 Score=28.97 Aligned_cols=47 Identities=11% Similarity=0.030 Sum_probs=35.9
Q ss_pred cceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEEecCC
Q psy4083 295 SRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFEGA 343 (374)
Q Consensus 295 s~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~~~~~ 343 (374)
..++...||+.+|+|+..+++.+..|...|-+..+=. +|-....+++
T Consensus 29 ~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~rG--~GGy~L~~~p 75 (149)
T 1ylf_A 29 SLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRG--PGGAGLLKDL 75 (149)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC-----CCEEESSCG
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEccC--CCceEeCCCh
Confidence 5689999999999999999999999999998876544 3433443433
No 316
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=54.62 E-value=92 Score=29.03 Aligned_cols=83 Identities=13% Similarity=0.018 Sum_probs=57.7
Q ss_pred HHHHHHHhc-----cCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHhhccccCCChh
Q psy4083 123 RLIALYFDT-----GEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHA-LSNLSTSRASLTSARTTANSIYCPPK 196 (374)
Q Consensus 123 kLa~~~~~~-----g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~-~~n~~~a~~~~~~a~~~~~~~~~~~~ 196 (374)
-|+.+|... |+.++|...+.+.+. -.+...++....-.+.++. .+|...+.+++.+|...+....++..
T Consensus 204 ~LG~lY~~vPp~~gGd~ekA~~~ferAL~-----LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~ 278 (301)
T 3u64_A 204 VLTKFYAAAPESFGGGMEKAHTAFEHLTR-----YCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNK 278 (301)
T ss_dssp HHHHHHHHSCTTTTCCHHHHHHHHHHHHH-----HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCH
T ss_pred HHHHHHHhCCCccCCCHHHHHHHHHHHHH-----hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChh
Confidence 588888884 999999887777663 2333335555556666666 59999999999999887533225566
Q ss_pred hhHHHHHHHHHHhh
Q psy4083 197 MQAALDLQSGILHA 210 (374)
Q Consensus 197 ~~~~i~~~~G~~~~ 210 (374)
+.+.+....+...+
T Consensus 279 lan~~~q~eA~~LL 292 (301)
T 3u64_A 279 LLVILSQKRARWLK 292 (301)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666665555444
No 317
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=54.35 E-value=65 Score=28.40 Aligned_cols=63 Identities=11% Similarity=0.141 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEE
Q psy4083 275 IGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIV 339 (374)
Q Consensus 275 ~~~L~~~ire~~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~ 339 (374)
.+.+++.|++..+..-+.|=.+++-..||+.||+|...|-+-|..|-.+|-+.- -+..|+.+.
T Consensus 30 ~~~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~--~~~~G~~V~ 92 (239)
T 2hs5_A 30 TTRVAGILRDAIIDGTFRPGARLSEPDICAALDVSRNTVREAFQILIEDRLVAH--ELNRGVFVR 92 (239)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--ETTTEEEEC
T ss_pred HHHHHHHHHHHHHcCCCCCcCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE--eCCCeeEEe
Confidence 456788888888888899999999999999999999999999999999998854 355676665
No 318
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=53.93 E-value=33 Score=27.40 Aligned_cols=54 Identities=9% Similarity=0.052 Sum_probs=41.0
Q ss_pred HHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccce--eecCCCC---eEEEe
Q psy4083 287 LCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHG--ILDQGEK---VLIVF 340 (374)
Q Consensus 287 l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~a--kID~~~g---iv~~~ 340 (374)
++.++.....++...||+.+|++..-+-+.|.+|...|-+.- .-|..++ .+...
T Consensus 46 iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT 104 (154)
T 2qww_A 46 MINVIYSTPGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLS 104 (154)
T ss_dssp HHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEEC
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEEC
Confidence 344444446799999999999999999999999999999987 6665555 45443
No 319
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=53.27 E-value=22 Score=31.70 Aligned_cols=65 Identities=2% Similarity=-0.032 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHhhccccce-eHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEEec
Q psy4083 275 IGTLYDNMLEQNLCRIIEPYSRV-EVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFE 341 (374)
Q Consensus 275 ~~~L~~~ire~~l~~~~~pYs~I-~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~~~ 341 (374)
+..+++.++......-+.|=..+ +-..||+.||+|..-|.+-|..|..+|-|..+ +..|+.+...
T Consensus 11 ~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~g~G~~V~~~ 76 (236)
T 3edp_A 11 FEVIASKIKDSINRDEYKTGMLMPNETALQEIYSSSRTTIRRAVDLLVEEGLVVRK--NGVGLYVQPK 76 (236)
T ss_dssp HHHHHHHHHHHHHTTSSCCCC--CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEECCC
T ss_pred HHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE--CCceEEEccC
Confidence 45677778877777778888999 89999999999999999999999999988654 5667777643
No 320
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=52.60 E-value=72 Score=24.03 Aligned_cols=33 Identities=6% Similarity=-0.103 Sum_probs=31.0
Q ss_pred eeHHHHHhHhCCChHHHHHHHHHHhhcCcccee
Q psy4083 297 VEVGFIAKSIKLDELAVEKKLSQMILDKKFHGI 329 (374)
Q Consensus 297 I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~ak 329 (374)
+....||..+|+++..+.+.+-.|...|-+.-.
T Consensus 21 ~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~ 53 (95)
T 1r7j_A 21 SPKTRIMYGANLSYALTGRYIKMLMDLEIIRQE 53 (95)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEE
Confidence 999999999999999999999999999988655
No 321
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=52.31 E-value=1e+02 Score=25.64 Aligned_cols=60 Identities=10% Similarity=0.046 Sum_probs=45.4
Q ss_pred HHHHHHhcc---CHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy4083 124 LIALYFDTG---EYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTT 187 (374)
Q Consensus 124 La~~~~~~g---~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~ 187 (374)
+|-.+...+ ++.+++.++.++++. +++...-|....-.-.|++.+||.+|+.++..+..+
T Consensus 38 ya~~Lv~S~~~~~~~~gI~lLe~ll~~----~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 38 YAWCLVRSKYNDDIRKGIVLLEELLPK----GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHH----SCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhc----CCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 444555555 788998888777752 224456777778888889999999999999998876
No 322
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=52.02 E-value=57 Score=24.18 Aligned_cols=63 Identities=16% Similarity=0.020 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhCC---HHHHHHHHHHHHhhccccCCChhhhHHHHHHHHHHhhcccccHHHHHHHHHHhccCc
Q psy4083 160 VLLLESKTYHALSN---LSTSRASLTSARTTANSIYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEGF 230 (374)
Q Consensus 160 v~l~ei~l~~~~~n---~~~a~~~~~~a~~~~~~~~~~~~~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~f 230 (374)
++..-.++.+..++ .+.+...+.+|.... +...++. ...|..++ ..++|..|..+|-...+.-
T Consensus 8 ~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-----p~~~rA~--~~lg~~~~-~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 8 QLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-----PYNEAAL--SLIANDHF-ISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp HHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-----TTCHHHH--HHHHHHHH-HTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-----cCCHHHH--HHHHHHHH-HcCCHHHHHHHHHHHHhhC
Confidence 33444444544554 688999999987763 2223333 34488899 9999999999998886643
No 323
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=51.67 E-value=4.7 Score=32.51 Aligned_cols=63 Identities=13% Similarity=0.124 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHhhccccce-eHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEE
Q psy4083 275 IGTLYDNMLEQNLCRIIEPYSRV-EVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIV 339 (374)
Q Consensus 275 ~~~L~~~ire~~l~~~~~pYs~I-~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~ 339 (374)
...+++.++...+..-+.|=.++ +...||+.||+|...|.+-+..|..+|-+..+ +..|+.+.
T Consensus 13 ~~~i~~~l~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~~~G~~V~ 76 (126)
T 3ic7_A 13 YLQIADRICDDILLGQYEEEGRIPSVREYASIVEVNANTVMRSYEYLQSQEVIYNK--RGIGFFVA 76 (126)
T ss_dssp TTHHHHHHHHHHHTTSSCBTSEECCTTTTTTCC-CCSGGGHHHHHHHHTTTSEEEE--TTTEEEEC
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEE--cCCccEEc
Confidence 45678888888888889999999 89999999999999999999999999988654 56677665
No 324
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=51.48 E-value=1e+02 Score=26.30 Aligned_cols=50 Identities=0% Similarity=0.070 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCcccee
Q psy4083 278 LYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGI 329 (374)
Q Consensus 278 L~~~ire~~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~ak 329 (374)
+.+..+.+. +.++.. .+++...||+.+|+|...+-+.|..|...|-|...
T Consensus 17 l~d~~~~~I-L~~L~~-~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 17 MLEDTRRKI-LKLLRN-KEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHSHHHHHH-HHHHTT-CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hCCHHHHHH-HHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 334444443 344442 68999999999999999999999999999999765
No 325
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=51.37 E-value=40 Score=27.08 Aligned_cols=49 Identities=10% Similarity=0.173 Sum_probs=36.7
Q ss_pred HHHhh-ccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCC
Q psy4083 287 LCRII-EPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEK 335 (374)
Q Consensus 287 l~~~~-~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~g 335 (374)
++.++ .....++...||+.+|++..-+-+.|.+|...|-+.-.-|..++
T Consensus 52 iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~~~~~d~ 101 (160)
T 3boq_A 52 AMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSADDR 101 (160)
T ss_dssp HHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC------
T ss_pred HHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCC
Confidence 44444 44567999999999999999999999999999999876655444
No 326
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=50.89 E-value=26 Score=29.84 Aligned_cols=50 Identities=10% Similarity=0.084 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhhccc-cceeHHHHHhHhCCChHHHHHHHHHHhhcCc-cc
Q psy4083 278 LYDNMLEQNLCRIIEPY-SRVEVGFIAKSIKLDELAVEKKLSQMILDKK-FH 327 (374)
Q Consensus 278 L~~~ire~~l~~~~~pY-s~I~l~~lA~~l~ls~~~vE~~L~~lI~dgk-l~ 327 (374)
+...-|...|+.++..- ..++...||+.||+|..-|.+.|..|-..|- |.
T Consensus 17 m~~~~R~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~ 68 (187)
T 1j5y_A 17 TVRQERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIV 68 (187)
T ss_dssp HHHHHHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCE
T ss_pred hhHHHHHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 34456677788888654 3499999999999999999999999988887 65
No 327
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=50.68 E-value=81 Score=24.71 Aligned_cols=50 Identities=14% Similarity=0.117 Sum_probs=38.7
Q ss_pred HHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEEe
Q psy4083 287 LCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVF 340 (374)
Q Consensus 287 l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~~ 340 (374)
+..+.+.-..+++..||+.+|++..-|-+.|.+|...|-+.-. . +.+...
T Consensus 22 l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r~--~--~~~~Lt 71 (139)
T 2x4h_A 22 IKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKK--E--DGVWIT 71 (139)
T ss_dssp HHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--T--TEEEEC
T ss_pred HHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEec--C--CeEEEC
Confidence 3344445578999999999999999999999999999877542 1 455553
No 328
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=50.57 E-value=89 Score=25.48 Aligned_cols=47 Identities=11% Similarity=0.046 Sum_probs=35.7
Q ss_pred ccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCC---eEEEe
Q psy4083 294 YSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEK---VLIVF 340 (374)
Q Consensus 294 Ys~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~g---iv~~~ 340 (374)
-..++...||+.+|++..-+-+.|.+|...|-|.-.-|..++ .|...
T Consensus 66 ~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT 115 (166)
T 3deu_A 66 PPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLT 115 (166)
T ss_dssp CSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC--------CEEEEC
T ss_pred CCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEEC
Confidence 346999999999999999999999999999999877755554 44443
No 329
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=50.43 E-value=1.7e+02 Score=27.80 Aligned_cols=28 Identities=18% Similarity=0.115 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHH----hCCHHHHHHHHHHHHh
Q psy4083 39 QNILQLGEKYKQ----EGKAIELAELIKKTRP 66 (374)
Q Consensus 39 ~~~~~l~~~~~~----~~~~~~l~~~l~~l~~ 66 (374)
.+.+.++.+|.. .++++...+++.....
T Consensus 76 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 107 (490)
T 2xm6_A 76 PAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL 107 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 366788999998 8899888777776543
No 330
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=50.04 E-value=9.7 Score=36.39 Aligned_cols=56 Identities=14% Similarity=0.102 Sum_probs=36.6
Q ss_pred HHhhHHHHHHHHHHHH---HHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccc
Q psy4083 271 VKAHIGTLYDNMLEQN---LCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFH 327 (374)
Q Consensus 271 l~~h~~~L~~~ire~~---l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~ 327 (374)
+++|-..+-+.+|..| +++++. ...++-..||+.+|+|..-|-+.+.+|+.+|-+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~il~~l~-~~~~sr~~la~~~gls~~tv~~~v~~L~~~gli~ 64 (380)
T 2hoe_A 6 IHHHHHHMPKSVRAENISRILKRIM-KSPVSRVELAEELGLTKTTVGEIAKIFLEKGIVV 64 (380)
T ss_dssp ----------------CCCSHHHHH-HSCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEE
T ss_pred cccccccCchhHHHHHHHHHHHHHH-cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 5556666667777764 567777 8999999999999999999999999999998874
No 331
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=49.44 E-value=33 Score=30.45 Aligned_cols=62 Identities=5% Similarity=0.108 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHhhccccce-eHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEE
Q psy4083 276 GTLYDNMLEQNLCRIIEPYSRV-EVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIV 339 (374)
Q Consensus 276 ~~L~~~ire~~l~~~~~pYs~I-~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~ 339 (374)
..+++.++......-+.|=..+ +-..||+.||+|..-|.+-|..|..+|-|..+ +..|+.+.
T Consensus 8 ~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~g~i~~~--~g~G~~V~ 70 (239)
T 3bwg_A 8 QQIATEIETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQV--RGSGIFVR 70 (239)
T ss_dssp CHHHHHHHHHHHHTTCCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEEC
T ss_pred HHHHHHHHHHHHhCCCCCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEe--CCceEEEe
Confidence 4566777777777778888999 89999999999999999999999999988643 55676665
No 332
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=49.24 E-value=28 Score=30.49 Aligned_cols=63 Identities=11% Similarity=0.113 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHhhccccce-eHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEE
Q psy4083 275 IGTLYDNMLEQNLCRIIEPYSRV-EVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIV 339 (374)
Q Consensus 275 ~~~L~~~ire~~l~~~~~pYs~I-~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~ 339 (374)
.+.+++.+++..+..-+.|=.++ +-..||+.||+|...|-+-|..|..+|-+.- -+..|+.+.
T Consensus 9 ~~~v~~~l~~~I~~g~l~pG~~LPsE~eLa~~~gVSR~tVReAL~~L~~eGlv~~--~~g~G~~V~ 72 (239)
T 1hw1_A 9 AGFAEEYIIESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQRLARDGWLTI--QHGKPTKVN 72 (239)
T ss_dssp HHHHHHHHHHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--ETTEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEE--ecCCCcEee
Confidence 45678888888888888999999 8999999999999999999999999998864 345577665
No 333
>2cru_A Programmed cell death protein 5; three helix bundle, apoptosis, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.6.1 PDB: 2k6b_A
Probab=49.15 E-value=8.6 Score=30.98 Aligned_cols=53 Identities=19% Similarity=0.154 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeec
Q psy4083 279 YDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILD 331 (374)
Q Consensus 279 ~~~ire~~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID 331 (374)
..+.+...|.+++.|=-+=+|++|+=.=-=-...||..|..|...|+|.++||
T Consensus 35 ~ee~r~~iL~qiLtpeAreRL~rI~lVKPEkA~~VE~~LI~lAq~Gqi~~kIt 87 (118)
T 2cru_A 35 EAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSEKVS 87 (118)
T ss_dssp HHHHHHHHHHHHBCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTCCCSCBC
T ss_pred HHHHHHHHHHHHcCHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 35678888999999987777777763211112589999999999999999886
No 334
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=49.11 E-value=35 Score=27.30 Aligned_cols=50 Identities=10% Similarity=0.037 Sum_probs=36.8
Q ss_pred HHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCC
Q psy4083 286 NLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEK 335 (374)
Q Consensus 286 ~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~g 335 (374)
.++.++.....++...||+.+|++..-+-+.+.+|...|-+.-.-|..++
T Consensus 45 ~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~ 94 (149)
T 4hbl_A 45 LVMLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQQSDK 94 (149)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC-------
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCCCCCCc
Confidence 34444444578999999999999999999999999999999877665555
No 335
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=49.09 E-value=50 Score=25.37 Aligned_cols=70 Identities=9% Similarity=-0.026 Sum_probs=49.7
Q ss_pred HHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCe-EEEe-cCCcchHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4083 301 FIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKV-LIVF-EGAEIDKTYEKALETITSMGKVIDTLYQKA 370 (374)
Q Consensus 301 ~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~gi-v~~~-~~~~~~~~y~~~~~~i~~l~~~vd~l~~~~ 370 (374)
.|++.++++...+-..|.+|..+|-|...-+..+|- -..+ =.+.-...+.+..+....+...++.+++..
T Consensus 31 ~l~~~~~i~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~l~~~~~~~~~~~~~i~~~l~~~ 102 (108)
T 3l7w_A 31 TIKLIASIKESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKHLVYLTKEWSVYKMTIDGIVEGR 102 (108)
T ss_dssp HHTTTCCCCHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHhCCCcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 344457999999999999999999998876643442 1112 233334567777788888888888888643
No 336
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=48.92 E-value=29 Score=31.60 Aligned_cols=64 Identities=8% Similarity=0.103 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHhhccccce-eHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEEe
Q psy4083 275 IGTLYDNMLEQNLCRIIEPYSRV-EVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVF 340 (374)
Q Consensus 275 ~~~L~~~ire~~l~~~~~pYs~I-~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~~ 340 (374)
+..+++.++.+....-+.|=.++ +-..||+.||+|..-|.+-|..|..+|-|.. -+..|+.+..
T Consensus 31 ~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~--~~g~G~~V~~ 95 (272)
T 3eet_A 31 YLRVAGDLRKKIVDGSLPPHTRLPSQARIREEYGVSDTVALEARKVLMAEGLVEG--RSGSGTYVRE 95 (272)
T ss_dssp HHHHHHHHHHHHHHTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--CCC--EEECC
T ss_pred HHHHHHHHHHHHHcCCCCCcCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE--ecCceEEEec
Confidence 46677778887777788888999 8999999999999999999999999998754 3445666553
No 337
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=48.26 E-value=34 Score=27.22 Aligned_cols=44 Identities=7% Similarity=-0.057 Sum_probs=27.7
Q ss_pred cceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEE
Q psy4083 295 SRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLI 338 (374)
Q Consensus 295 s~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~ 338 (374)
..++...||+.+|++..-+-+.|.+|...|-+.-.-|..++...
T Consensus 56 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~ 99 (148)
T 3jw4_A 56 SGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRIPENNARQK 99 (148)
T ss_dssp TCCCHHHHHHC------CHHHHHHHHHHTTSBCCC--------C
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeCCCCCchhh
Confidence 67999999999999999999999999999999887776666443
No 338
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=47.77 E-value=69 Score=25.37 Aligned_cols=42 Identities=14% Similarity=0.116 Sum_probs=32.0
Q ss_pred cceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCe
Q psy4083 295 SRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKV 336 (374)
Q Consensus 295 s~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~gi 336 (374)
..++...||+.+|++...+-+.|.+|...|-+.-.-|..++.
T Consensus 53 ~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~D~R 94 (150)
T 3fm5_A 53 EGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTLDPSDRR 94 (150)
T ss_dssp TCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC--------
T ss_pred CCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeCCccccc
Confidence 358999999999999999999999999999998777766654
No 339
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=47.74 E-value=68 Score=26.09 Aligned_cols=44 Identities=5% Similarity=-0.024 Sum_probs=36.3
Q ss_pred cceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEE
Q psy4083 295 SRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLI 338 (374)
Q Consensus 295 s~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~ 338 (374)
..++...||+.+|++..-+-+.|.+|...|-|.-.-|..++...
T Consensus 61 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~ 104 (168)
T 3u2r_A 61 EGMATLQIADRLISRAPDITRLIDRLDDRGLVLRTRKPENRRVV 104 (168)
T ss_dssp SCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEEEETTEEEEE
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeecCCCCCCCee
Confidence 47999999999999999999999999999999988887777433
No 340
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=47.57 E-value=20 Score=30.08 Aligned_cols=44 Identities=18% Similarity=0.258 Sum_probs=36.0
Q ss_pred cceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEE
Q psy4083 295 SRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLI 338 (374)
Q Consensus 295 s~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~ 338 (374)
..++.+.||+.+|+|...+++.+..|-..|-+..+=-...|..-
T Consensus 27 ~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~rG~~GGy~L 70 (162)
T 3k69_A 27 SKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGTVGKNGGYQL 70 (162)
T ss_dssp SCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEECSTTCEEEC
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecCCCCCeEe
Confidence 46999999999999999999999999999988665444334443
No 341
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=46.49 E-value=29 Score=27.79 Aligned_cols=48 Identities=10% Similarity=0.073 Sum_probs=36.7
Q ss_pred HHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCC
Q psy4083 288 CRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEK 335 (374)
Q Consensus 288 ~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~g 335 (374)
+.++.....++...||+.+|++..-+-+.|.+|...|-+.-..|..++
T Consensus 53 L~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~ 100 (153)
T 2pex_A 53 MLVLWETDERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTRAASDE 100 (153)
T ss_dssp HHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-----
T ss_pred HHHHHhCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCcccC
Confidence 333434567999999999999999999999999999999876655444
No 342
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=46.05 E-value=18 Score=26.45 Aligned_cols=26 Identities=15% Similarity=0.140 Sum_probs=23.0
Q ss_pred ccceeHHHHHhHhCCChHHHHHHHHH
Q psy4083 294 YSRVEVGFIAKSIKLDELAVEKKLSQ 319 (374)
Q Consensus 294 Ys~I~l~~lA~~l~ls~~~vE~~L~~ 319 (374)
|-+.+++.+|..+|++.++||+.|..
T Consensus 46 YL~~~l~eia~~l~~~~~eve~vL~~ 71 (76)
T 2k9l_A 46 FLSKSVEEISDVLRCSVEELEKVRQK 71 (76)
T ss_dssp TTCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCCHHHHHHHHHH
Confidence 67889999999999999999988754
No 343
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=45.98 E-value=34 Score=30.12 Aligned_cols=66 Identities=8% Similarity=0.057 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHhhccccce-eHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCC--CCeEEEe
Q psy4083 275 IGTLYDNMLEQNLCRIIEPYSRV-EVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQG--EKVLIVF 340 (374)
Q Consensus 275 ~~~L~~~ire~~l~~~~~pYs~I-~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~--~giv~~~ 340 (374)
.+.+++.|++..+..-+.|=+++ +-..||+.||+|...|-+-|..|-.+|-+.-+--+. .|+.+..
T Consensus 6 ~~~v~~~L~~~I~~g~l~pG~~LpsE~~La~~lgVSRtpVREAL~~L~~~GlV~~~~~~~~~~G~~V~~ 74 (239)
T 2di3_A 6 HESVMDWVTEELRSGRLKIGDHLPSERALSETLGVSRSSLREALRVLEALGTISTATGSGPRSGTIITA 74 (239)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEECCSTTSGGGCCEECC
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeecccCCCCCceeeC
Confidence 45678889888888889999999 578999999999999999999999999886521333 6777764
No 344
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=45.57 E-value=29 Score=25.84 Aligned_cols=29 Identities=17% Similarity=0.009 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q psy4083 116 LRQSLEARLIALYFDTGEYTEALKLSSSLLK 146 (374)
Q Consensus 116 lr~~l~~kLa~~~~~~g~~~~Al~~~~~ll~ 146 (374)
.|..+ -||..+++.|+|++|+..+.+++.
T Consensus 43 ~rA~~--~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 43 EAALS--LIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp HHHHH--HHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHH--HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34544 477788888888888887777763
No 345
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=45.54 E-value=27 Score=27.68 Aligned_cols=47 Identities=11% Similarity=0.080 Sum_probs=38.2
Q ss_pred HhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCC
Q psy4083 289 RIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEK 335 (374)
Q Consensus 289 ~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~g 335 (374)
.++.....++...||+.+|++...+-+.|.+|...|-+.-..|..++
T Consensus 47 ~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~ 93 (147)
T 1z91_A 47 LLLWEHETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSEEDE 93 (147)
T ss_dssp HHHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBCSSCT
T ss_pred HHHHHCCCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEeccCCCCC
Confidence 33333457999999999999999999999999999999776665444
No 346
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=45.30 E-value=74 Score=24.00 Aligned_cols=37 Identities=19% Similarity=0.239 Sum_probs=33.0
Q ss_pred cceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeec
Q psy4083 295 SRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILD 331 (374)
Q Consensus 295 s~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID 331 (374)
..+++..||+.+|++...+-+.|..|...|-+..+-+
T Consensus 38 ~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~~ 74 (106)
T 1r1u_A 38 SEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQ 74 (106)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 4578999999999999999999999999998877544
No 347
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=45.10 E-value=4 Score=30.68 Aligned_cols=49 Identities=16% Similarity=0.205 Sum_probs=34.8
Q ss_pred HHHHHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeec
Q psy4083 283 LEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILD 331 (374)
Q Consensus 283 re~~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID 331 (374)
+...+.+++.|=-+=+|++|+=.=-=-...||..|.+|...|+|.++||
T Consensus 7 r~~iL~qiL~~eAreRL~rI~lvKPe~A~~VE~~Li~lAq~Gqi~~ki~ 55 (81)
T 2fh0_A 7 VGAAIANFLEPQALERLSRVALVRRDRAQAVETYLKKLIATNNVTHKIT 55 (81)
T ss_dssp SSHHHHTTBCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTCCSCCBC
T ss_pred HHHHHHHHcCHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 3456777777776666666653211112589999999999999999886
No 348
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=45.05 E-value=16 Score=30.62 Aligned_cols=38 Identities=8% Similarity=0.080 Sum_probs=31.8
Q ss_pred cceeHHHHHhHhCCChHHHHHHHHHHhhcCccce-eecCCCCeEEE
Q psy4083 295 SRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHG-ILDQGEKVLIV 339 (374)
Q Consensus 295 s~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~a-kID~~~giv~~ 339 (374)
.-+++..+|+.||++...|. +||.+|+|-| |++ |...+
T Consensus 30 ~~LTv~EVAe~LgVs~srV~----~LIr~G~L~AVr~G---r~~rV 68 (148)
T 2kfs_A 30 PTYDLPRVAELLGVPVSKVA----QQLREGHLVAVRRA---GGVVI 68 (148)
T ss_dssp CEEEHHHHHHHHTCCHHHHH----HHHHTTSCCCEEET---TEEEE
T ss_pred ceEcHHHHHHHhCCCHHHHH----HHHHCCCceEEEEC---CEEEe
Confidence 56789999999999988877 6899999998 886 55544
No 349
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=44.37 E-value=1e+02 Score=29.54 Aligned_cols=89 Identities=13% Similarity=0.091 Sum_probs=49.8
Q ss_pred HHHHHHHhcc---CHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHh----CCHHHHHHHHHHHHhhccccCCCh
Q psy4083 123 RLIALYFDTG---EYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHAL----SNLSTSRASLTSARTTANSIYCPP 195 (374)
Q Consensus 123 kLa~~~~~~g---~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~----~n~~~a~~~~~~a~~~~~~~~~~~ 195 (374)
.|+.+|...| ++++|++.+.+... ..+..- ..+..--.+|... +|+.++..++.++- + .+|
T Consensus 181 ~Lg~~~~~~g~~~~~~~A~~~~~~aa~----~g~~~a--~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa--~----g~~ 248 (452)
T 3e4b_A 181 ELATVYQKKQQPEQQAELLKQMEAGVS----RGTVTA--QRVDSVARVLGDATLGTPDEKTAQALLEKIA--P----GYP 248 (452)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH----TTCSCH--HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG--G----GST
T ss_pred HHHHHHHHcCCcccHHHHHHHHHHHHH----CCCHHH--HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc--C----CCH
Confidence 5788888888 88888776655432 111111 1111222333322 58888888888764 2 233
Q ss_pred hhhHHHHHHHHHH-h--hcccccHHHHHHHHHHhcc
Q psy4083 196 KMQAALDLQSGIL-H--AADEQDFKTAFSYFYEAFE 228 (374)
Q Consensus 196 ~~~~~i~~~~G~~-~--~~~~rdy~~A~~~F~eaf~ 228 (374)
.-+.. -|.+ + . ..+|+.+|..+|-.+.+
T Consensus 249 ~a~~~----Lg~~~~~~~-~~~d~~~A~~~~~~Aa~ 279 (452)
T 3e4b_A 249 ASWVS----LAQLLYDFP-ELGDVEQMMKYLDNGRA 279 (452)
T ss_dssp HHHHH----HHHHHHHSG-GGCCHHHHHHHHHHHHH
T ss_pred HHHHH----HHHHHHhCC-CCCCHHHHHHHHHHHHH
Confidence 32222 1332 3 4 57788888888877753
No 350
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=43.90 E-value=22 Score=27.23 Aligned_cols=35 Identities=23% Similarity=0.236 Sum_probs=27.4
Q ss_pred HHHHHHHhhccccceeHHHHHhHhCCChHHHHHHHH
Q psy4083 283 LEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLS 318 (374)
Q Consensus 283 re~~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~ 318 (374)
|...|..++.... +++..+|+.+|+|..-|-+.|.
T Consensus 8 R~~~I~~~l~~~~-~ti~dlA~~~gVS~~TVsR~L~ 42 (93)
T 2l0k_A 8 RTIKIGKYIVETK-KTVRVIAKEFGVSKSTVHKDLT 42 (93)
T ss_dssp HHHHHHHHHHHHC-CCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHcC-CCHHHHHHHHCCCHHHHHHHHc
Confidence 4455666666554 8999999999999999888763
No 351
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=43.80 E-value=54 Score=22.01 Aligned_cols=51 Identities=8% Similarity=0.109 Sum_probs=37.5
Q ss_pred HHHHHHHHhhccccceeHHHHHhHh-----CCChHHHHHHHHHHhhcCccceeecCCCCeE
Q psy4083 282 MLEQNLCRIIEPYSRVEVGFIAKSI-----KLDELAVEKKLSQMILDKKFHGILDQGEKVL 337 (374)
Q Consensus 282 ire~~l~~~~~pYs~I~l~~lA~~l-----~ls~~~vE~~L~~lI~dgkl~akID~~~giv 337 (374)
-|...+..++..-..++.+.|++.| ++|..-|-+.|..+ |.+ ++...+|..
T Consensus 5 ~R~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~l---g~v--~~~~~~~~~ 60 (64)
T 2p5k_A 5 QRHIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKEL---HLV--KVPTNNGSY 60 (64)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHH---TCE--EEEETTTEE
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHc---CCE--EEecCCCce
Confidence 3555566666666789999999999 99999999999844 544 555555543
No 352
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=43.76 E-value=4.9 Score=37.02 Aligned_cols=38 Identities=3% Similarity=0.134 Sum_probs=0.0
Q ss_pred cceeHHHHHhHh-CCChHHHHHHHHHHhhcCccceeecC
Q psy4083 295 SRVEVGFIAKSI-KLDELAVEKKLSQMILDKKFHGILDQ 332 (374)
Q Consensus 295 s~I~l~~lA~~l-~ls~~~vE~~L~~lI~dgkl~akID~ 332 (374)
.=|+++.|++.| ++++++|.+.|-.|+.+|.|+-.||-
T Consensus 223 ~Gi~~~~I~~~l~~~~~~~v~~al~~L~~eG~IYsTiDd 261 (270)
T 2pi2_A 223 EGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIYSTVDD 261 (270)
T ss_dssp ---------------------------------------
T ss_pred cCCCHHHHHHHhcCCCHHHHHHHHHHHHhCCEEeccccc
Confidence 567788999999 69999999999999999999999995
No 353
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=42.91 E-value=97 Score=24.24 Aligned_cols=47 Identities=21% Similarity=0.127 Sum_probs=36.8
Q ss_pred HHHHHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeec
Q psy4083 283 LEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILD 331 (374)
Q Consensus 283 re~~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID 331 (374)
|.+.+..+.+ ...++..+|+.+|++..-+-+.|..|...|-+...-+
T Consensus 48 rl~IL~~L~~--~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~~~~ 94 (122)
T 1r1t_A 48 RLRLLSLLAR--SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQ 94 (122)
T ss_dssp HHHHHHHHTT--CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 4344444433 4578999999999999999999999999998876544
No 354
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=42.67 E-value=38 Score=23.46 Aligned_cols=29 Identities=17% Similarity=0.171 Sum_probs=24.6
Q ss_pred ccceeHHHHHhHhCCChHHHHHHHHHHhh
Q psy4083 294 YSRVEVGFIAKSIKLDELAVEKKLSQMIL 322 (374)
Q Consensus 294 Ys~I~l~~lA~~l~ls~~~vE~~L~~lI~ 322 (374)
+.-.+...||+.+|+|+.-|...+.+...
T Consensus 24 ~~g~s~~eIA~~l~is~~tV~~~~~~~~~ 52 (74)
T 1fse_A 24 VQDKTTKEIASELFISEKTVRNHISNAMQ 52 (74)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45668999999999999999998887653
No 355
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=42.42 E-value=31 Score=24.06 Aligned_cols=32 Identities=13% Similarity=0.139 Sum_probs=28.8
Q ss_pred cceeHHHHHhHhCCChHHHHHHHHHHhhcCcc
Q psy4083 295 SRVEVGFIAKSIKLDELAVEKKLSQMILDKKF 326 (374)
Q Consensus 295 s~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl 326 (374)
--++++..|+.+|++.++|-+.|.+|=..|-|
T Consensus 24 GildI~~~a~kygV~kdeV~~~LrrLe~KGLI 55 (59)
T 2xvc_A 24 GFLDIEHFSKVYGVEKQEVVKLLEALKNKGLI 55 (59)
T ss_dssp SEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSE
T ss_pred CEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCe
Confidence 45889999999999999999999999888765
No 356
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=41.69 E-value=34 Score=26.97 Aligned_cols=52 Identities=10% Similarity=0.195 Sum_probs=42.0
Q ss_pred HHHHHhhccccceeHHHHHhHh--CCChHHHHHHHHHHhhcCccceeecCCCCeEEE
Q psy4083 285 QNLCRIIEPYSRVEVGFIAKSI--KLDELAVEKKLSQMILDKKFHGILDQGEKVLIV 339 (374)
Q Consensus 285 ~~l~~~~~pYs~I~l~~lA~~l--~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~ 339 (374)
..|+.++....+++...||+.+ |+|...|-+.|..|...|-|... ..|+...
T Consensus 16 ~~IL~~L~~~g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~---~rg~Y~L 69 (111)
T 3b73_A 16 DRILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPL---ANGVYVI 69 (111)
T ss_dssp HHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEEC---STTCEEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEec---CCceEEE
Confidence 4455556556789999999999 99999999999999999999874 4554444
No 357
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=41.38 E-value=7 Score=34.47 Aligned_cols=42 Identities=14% Similarity=0.290 Sum_probs=34.6
Q ss_pred ceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEEec
Q psy4083 296 RVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFE 341 (374)
Q Consensus 296 ~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~~~ 341 (374)
.++-..||..+|++.+.+-+.+.+|..+|-| ....|.+.+.+
T Consensus 177 ~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I----~~~~~~i~i~d 218 (250)
T 3e6c_C 177 PLSQKSIGEITGVHHVTVSRVLASLKRENIL----DKKKNKIIVYN 218 (250)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSE----EECSSEEEESC
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCe----EeCCCEEEEec
Confidence 5788999999999999999999999999866 33456666643
No 358
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=40.92 E-value=2.8e+02 Score=29.10 Aligned_cols=89 Identities=11% Similarity=0.172 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHHHHHHh-c-----c------chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHH
Q psy4083 133 EYTEALKLSSSLLKELKKL-D-----D------KNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAA 200 (374)
Q Consensus 133 ~~~~Al~~~~~ll~el~~~-d-----d------~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~ 200 (374)
+=-+|..++.+.++++... . + ....-++...|++.+...+++..|...-.+|-..+.+.+..|...+.
T Consensus 300 ~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~ 379 (754)
T 4gns_B 300 KELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLAR 379 (754)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 3456777777777665431 1 1 12234567778999999999999987777776554443344544433
Q ss_pred HHHHHHHHhhcccccHHHHHHHHHHhccCc
Q psy4083 201 LDLQSGILHAADEQDFKTAFSYFYEAFEGF 230 (374)
Q Consensus 201 i~~~~G~~~~~~~rdy~~A~~~F~eaf~~f 230 (374)
.|+ .-+||+.|. ..+.++.-|
T Consensus 380 -------vYi-~l~d~e~AL-LtLNScPm~ 400 (754)
T 4gns_B 380 -------CHI-KKEEYEKAL-FAINSMPRL 400 (754)
T ss_dssp -------HHH-HTTCHHHHH-HHHHHSCC-
T ss_pred -------HHH-HhccHHHHH-HHHhcCCCc
Confidence 455 779999988 557776533
No 359
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=40.82 E-value=53 Score=27.51 Aligned_cols=47 Identities=17% Similarity=0.205 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhhccccCCChhhhHHHHHHHHHHhhccc-----------ccHHHHHHHHHHhcc
Q psy4083 174 LSTSRASLTSARTTANSIYCPPKMQAALDLQSGILHAADE-----------QDFKTAFSYFYEAFE 228 (374)
Q Consensus 174 ~~~a~~~~~~a~~~~~~~~~~~~~~~~i~~~~G~~~~~~~-----------rdy~~A~~~F~eaf~ 228 (374)
+..|...+.+|..+. |..- ...-+-|..+. .. ++|.+|..+|-.|.+
T Consensus 62 ~~eAi~~le~AL~ld------P~~~-~A~~~LG~ay~-~lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 62 IQEAITKFEEALLID------PKKD-EAVWCIGNAYT-SFAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHHHHHHHHHHHHHC------TTCH-HHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC------cCcH-HHHHHHHHHHH-HhcccCcchhhhhccHHHHHHHHHHHHH
Confidence 667888888887763 3222 22334455555 43 488888888887754
No 360
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=40.73 E-value=63 Score=23.96 Aligned_cols=46 Identities=17% Similarity=0.157 Sum_probs=35.8
Q ss_pred HHHHHHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccc
Q psy4083 282 MLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFH 327 (374)
Q Consensus 282 ire~~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~ 327 (374)
+-++.|-.+-+.=+-++-..||+.+|++..+|.+-+-+|=.+|+|.
T Consensus 20 ~eekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEgkI~ 65 (80)
T 2lnb_A 20 LEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVS 65 (80)
T ss_dssp HHHHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCcc
Confidence 3344444444445678899999999999999999999999888753
No 361
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=40.50 E-value=1.4e+02 Score=23.93 Aligned_cols=41 Identities=12% Similarity=0.133 Sum_probs=36.7
Q ss_pred cceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCC
Q psy4083 295 SRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEK 335 (374)
Q Consensus 295 s~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~g 335 (374)
..++...||+.+|++..-+-+.+.+|...|-+.-..|..++
T Consensus 45 ~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~~~~Dr 85 (151)
T 4aik_A 45 PEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHTSANDR 85 (151)
T ss_dssp TTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeecCCCCC
Confidence 34567899999999999999999999999999888887777
No 362
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=40.37 E-value=2.7e+02 Score=27.22 Aligned_cols=165 Identities=10% Similarity=0.021 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccccc--------hhhhHHHHHHHHHHH-H
Q psy4083 39 QNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETR--------TGMEVALCKECIEWA-K 109 (374)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~~~~~--------~~~~~~l~~e~i~~~-~ 109 (374)
.++....+.|++.|++++..+++...... .+..+ .-.-+.+|..+...... .+.-.+++.+..+.- .
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~--Gv~pd--~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~ 102 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRN--GVQLS--QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVV 102 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TCCCC--HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCC--HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCC
Confidence 34566689999999999998888876643 12111 12345666666432110 112233333222110 0
Q ss_pred HhhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcc
Q psy4083 110 EERRTFLRQSLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTAN 189 (374)
Q Consensus 110 ~~~r~~lr~~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~ 189 (374)
-+..+| + -|...|...|++++|++++.++. ... -.--+..|-.-+..|...|++..|..++..-...
T Consensus 103 Pd~~ty---n---~lI~~~~~~g~~~~A~~l~~~M~----~~g-~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-- 169 (501)
T 4g26_A 103 PNEATF---T---NGARLAVAKDDPEMAFDMVKQMK----AFG-IQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES-- 169 (501)
T ss_dssp CCHHHH---H---HHHHHHHHHTCHHHHHHHHHHHH----HTT-CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--
T ss_pred CCHHHH---H---HHHHHHHhcCCHHHHHHHHHHHH----HcC-CCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 011111 1 36778899999999976665543 321 1112334566678888999999999888875443
Q ss_pred ccCCChhhhH-HHHHHHHHHhhcccccHHHHHHHHHHh
Q psy4083 190 SIYCPPKMQA-ALDLQSGILHAADEQDFKTAFSYFYEA 226 (374)
Q Consensus 190 ~~~~~~~~~~-~i~~~~G~~~~~~~rdy~~A~~~F~ea 226 (374)
...++...-+ .|+. +. ..|++.+|...|-+-
T Consensus 170 G~~Pd~~ty~~Li~~-----~~-~~g~~d~A~~ll~~M 201 (501)
T 4g26_A 170 EVVPEEPELAALLKV-----SM-DTKNADKVYKTLQRL 201 (501)
T ss_dssp TCCCCHHHHHHHHHH-----HH-HTTCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH-----Hh-hCCCHHHHHHHHHHH
Confidence 2223333221 2222 23 678888888776553
No 363
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=40.14 E-value=25 Score=28.09 Aligned_cols=33 Identities=18% Similarity=0.194 Sum_probs=30.5
Q ss_pred cceeHHHHHhHhCCChHHHHHHHHHHhhcCc-cc
Q psy4083 295 SRVEVGFIAKSIKLDELAVEKKLSQMILDKK-FH 327 (374)
Q Consensus 295 s~I~l~~lA~~l~ls~~~vE~~L~~lI~dgk-l~ 327 (374)
.-.+++.||+.-|++...++..|++++.+|. ++
T Consensus 31 ~G~sleeIA~~R~L~~~TI~~Hl~~~v~~G~~l~ 64 (122)
T 3iuo_A 31 RKVALDDIAVSHGLDFPELLSEVETIVYSGTRIN 64 (122)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHHHHHHTTCCCC
T ss_pred cCCCHHHHHHHcCCCHHHHHHHHHHHHHcCCccC
Confidence 6789999999999999999999999999995 54
No 364
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=39.73 E-value=1.4e+02 Score=32.84 Aligned_cols=116 Identities=14% Similarity=0.027 Sum_probs=72.2
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHh-----------------ccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKL-----------------DDKNLLVEVLLLESKTYHALSNLSTSRASLTSAR 185 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~-----------------dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~ 185 (374)
-+|..|+..|++++|..++.+.-..+... .....+...|+..++++-..+-+..+-.+...|.
T Consensus 847 l~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi 926 (1139)
T 4fhn_B 847 LKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLAD 926 (1139)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 37888999999999977764321000000 0112234567888889888888888887777776
Q ss_pred hhccccCCChhhhHHHHHHHHHHhhcccccHHHHHHHHHHhccCcCcccchhHHHHHHHHHH
Q psy4083 186 TTANSIYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEGFSTVDHNHAMMSLKYMLL 247 (374)
Q Consensus 186 ~~~~~~~~~~~~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~f~~~~~~~~~~~LkY~vL 247 (374)
..... .++.+...+...-=+.++ .-++|+.|+....-. .+...+.+||+.+|.
T Consensus 927 ~~~~~--~~~~~~~~l~~~iFk~~L-~l~~ye~Ay~aL~~~------pd~~~r~~cLr~LV~ 979 (1139)
T 4fhn_B 927 ASKET--DDEDLSIAITHETLKTAC-AAGKFDAAHVALMVL------STTPLKKSCLLDFVN 979 (1139)
T ss_dssp HHCCS--CCHHHHHHHHHHHHHHHH-HHCCSGGGGHHHHHH------HHSSSCHHHHHHHHH
T ss_pred HhccC--CChhhHHHHHHHHHHHHH-hhCCHHHHHHHHHhC------CCHHHHHHHHHHHHH
Confidence 65422 455555544433334466 778999988776532 112345678888764
No 365
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=39.32 E-value=36 Score=22.72 Aligned_cols=29 Identities=14% Similarity=0.056 Sum_probs=24.7
Q ss_pred ccceeHHHHHhHhCCChHHHHHHHHHHhh
Q psy4083 294 YSRVEVGFIAKSIKLDELAVEKKLSQMIL 322 (374)
Q Consensus 294 Ys~I~l~~lA~~l~ls~~~vE~~L~~lI~ 322 (374)
+.-.+...||+.+|+|+.-|...+.+...
T Consensus 11 ~~g~s~~eIA~~l~is~~tV~~~~~~~~~ 39 (61)
T 2jpc_A 11 DEGYTNHGISEKLHISIKTVETHRMNMMR 39 (61)
T ss_dssp HTSCCSHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 45668899999999999999998887654
No 366
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=39.25 E-value=1.5e+02 Score=23.71 Aligned_cols=35 Identities=14% Similarity=0.074 Sum_probs=31.1
Q ss_pred cceeHHHHHhHhCCChHHHHHHHHHHhhcCcccee
Q psy4083 295 SRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGI 329 (374)
Q Consensus 295 s~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~ak 329 (374)
..++...+|+.||++..-|-+.|..|...|-+.-+
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r~ 87 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMI 87 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEe
Confidence 56789999999999999999999999999876544
No 367
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=39.25 E-value=39 Score=25.31 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=30.4
Q ss_pred HHHHHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhc
Q psy4083 283 LEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILD 323 (374)
Q Consensus 283 re~~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~d 323 (374)
+++.++.+. +.-.+...||+.+|+|+.-|...+.+....
T Consensus 31 ~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~~k 69 (95)
T 3c57_A 31 QERTLLGLL--SEGLTNKQIADRMFLAEKTVKNYVSRLLAK 69 (95)
T ss_dssp HHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 344445554 677889999999999999999998887653
No 368
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=39.05 E-value=45 Score=24.17 Aligned_cols=29 Identities=17% Similarity=0.292 Sum_probs=25.5
Q ss_pred ccceeHHHHHhHhCCChHHHHHHHHHHhh
Q psy4083 294 YSRVEVGFIAKSIKLDELAVEKKLSQMIL 322 (374)
Q Consensus 294 Ys~I~l~~lA~~l~ls~~~vE~~L~~lI~ 322 (374)
+.-.+...||+.+|+++.-|...+.+...
T Consensus 34 ~~g~s~~eIA~~l~is~~tV~~~l~r~~~ 62 (82)
T 1je8_A 34 AQGLPNKMIARRLDITESTVKVHVKHMLK 62 (82)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 57789999999999999999998887654
No 369
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=38.33 E-value=49 Score=23.26 Aligned_cols=37 Identities=14% Similarity=0.183 Sum_probs=29.1
Q ss_pred HHHHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhh
Q psy4083 284 EQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMIL 322 (374)
Q Consensus 284 e~~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~ 322 (374)
++.++.+. +.-.+...||+.+|+|+.-|...+.+...
T Consensus 21 e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~~~r~~~ 57 (79)
T 1x3u_A 21 ERQVLSAV--VAGLPNKSIAYDLDISPRTVEVHRANVMA 57 (79)
T ss_dssp HHHHHHHH--TTTCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 44444443 67889999999999999999998887664
No 370
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.07 E-value=24 Score=34.03 Aligned_cols=97 Identities=13% Similarity=0.109 Sum_probs=60.5
Q ss_pred HHHHHHHHhhccccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHH
Q psy4083 79 LVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQSLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLV 158 (374)
Q Consensus 79 ~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~~~~r~~lr~~l~~kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~l 158 (374)
-|+.+|+.+....+ .+ -.+.+ ..+++.. ++|+|....+ +|..++.+.+..+..+++|...+.....-..+-.++
T Consensus 6 ~i~~~l~~~~~~~~-~~-l~~~~-~~le~~~-~~kLWhqlt~--~L~~~~~~~~~~~~~~~ly~~fi~~f~~kin~L~lv 79 (393)
T 4b4t_O 6 EIDTILSTLRMEAD-PS-LHPLF-EQFEKFY-EEKLWFQLSE--SLTKFFDDAKSTPLRLRLYDNFVSKFYDKINQLSVV 79 (393)
T ss_dssp HHHHHHHHHHCSSC-SS-CCSSH-HHHHHHH-CCSSCCSCCC--TTHHHHCCCSSCCCCHHHHHHHHHHHHHHSCSHHHH
T ss_pred hHHHHHHHHHhcCC-HH-HHHHH-HHHHHHH-HHhHHHHHHH--HHHHHHhChhcchHHHHHHHHHHHHHHHhcCHHHHH
Confidence 36777887765322 11 11222 2355555 5699998766 799888877766677777777776655444454555
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy4083 159 EVLLLESKTYHALSNLSTSRASLTSA 184 (374)
Q Consensus 159 ev~l~ei~l~~~~~n~~~a~~~~~~a 184 (374)
++. +.++...+|...+..++...
T Consensus 80 ~~~---~~~~~~~~d~~~al~~L~~~ 102 (393)
T 4b4t_O 80 KYL---LASLKDSKDFDESLKYLDDL 102 (393)
T ss_dssp HTT---HHHHHHTTCHHHHHHHHHHH
T ss_pred HHH---HHHHhhcCCHHHHHHHHHHH
Confidence 554 33445567888888777654
No 371
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=37.68 E-value=1.2e+02 Score=23.10 Aligned_cols=65 Identities=11% Similarity=0.058 Sum_probs=43.9
Q ss_pred ccceeHHHHHhHhC----CChHHHHHHHHHHhhcCccceeecCCCCeEEEecCCcchHHHHHHHHHHHHH
Q psy4083 294 YSRVEVGFIAKSIK----LDELAVEKKLSQMILDKKFHGILDQGEKVLIVFEGAEIDKTYEKALETITSM 359 (374)
Q Consensus 294 Ys~I~l~~lA~~l~----ls~~~vE~~L~~lI~dgkl~akID~~~giv~~~~~~~~~~~y~~~~~~i~~l 359 (374)
...++...||+.++ ++..-+-+.|-+|...|-+.-.-| ....+.+.-.+.....+..+......+
T Consensus 22 ~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~~-~rr~~~~~lT~~g~~~~~~~~~~~~~~ 90 (123)
T 1okr_A 22 KKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKD-NKIFQYYSLVEESDIKYKTSKNFINKV 90 (123)
T ss_dssp HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEEE-TTEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEec-CCeEEEEEecCHHHHHHHHHHHHHHHH
Confidence 46799999999999 889999999999999999987655 222332333333333344444444443
No 372
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=37.21 E-value=1e+02 Score=27.48 Aligned_cols=44 Identities=18% Similarity=0.220 Sum_probs=36.9
Q ss_pred cccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEE
Q psy4083 293 PYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIV 339 (374)
Q Consensus 293 pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~ 339 (374)
..-..+.+.||+.+|+|+..|+..|.+|...|-+. -..+|.|.+
T Consensus 175 ~~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~---~~~~~~~~~ 218 (232)
T 2qlz_A 175 LNGRATVEELSDRLNLKEREVREKISEMARFVPVK---IINDNTVVL 218 (232)
T ss_dssp HSSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEE---EETTTEEEE
T ss_pred hcCCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeE---EecCCeEEe
Confidence 35788999999999999999999999999999876 234566665
No 373
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=37.13 E-value=31 Score=32.45 Aligned_cols=41 Identities=2% Similarity=0.031 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhhccc----cceeHHHHHhHhCCC-hHHHHHHHH
Q psy4083 278 LYDNMLEQNLCRIIEPY----SRVEVGFIAKSIKLD-ELAVEKKLS 318 (374)
Q Consensus 278 L~~~ire~~l~~~~~pY----s~I~l~~lA~~l~ls-~~~vE~~L~ 318 (374)
+..++|..++..+.+.| ..++++++++.|+.+ ++++.+.+.
T Consensus 202 ~~~~vR~~AL~~i~kay~~k~~~~pl~~L~~~L~Fds~ee~~~F~~ 247 (316)
T 3t5v_A 202 HLTDIRFYALRALSHTLNKKHKPIPFIYLENMLLFNNRQEIIEFCN 247 (316)
T ss_dssp GHHHHHHHHHHHHHHHSCTTCCCEEHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCCcCHHHHHHHhCCCCHHHHHHHHH
Confidence 35779999999999999 489999999999995 677776663
No 374
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=36.65 E-value=77 Score=26.02 Aligned_cols=54 Identities=9% Similarity=-0.009 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeec
Q psy4083 276 GTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILD 331 (374)
Q Consensus 276 ~~L~~~ire~~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID 331 (374)
.-|-+..|.+.+..+. -..++...||+.+|++...|-..|..|...|-+..+-|
T Consensus 53 ~aL~~p~R~~IL~~L~--~~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~~ 106 (151)
T 3f6v_A 53 EVAAEPTRRRLVQLLT--SGEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKD 106 (151)
T ss_dssp HHHTSHHHHHHHHHGG--GCCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHhCCHHHHHHHHHHH--hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEec
Confidence 4444556666655554 35689999999999999999999999999999987654
No 375
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=36.61 E-value=1.4e+02 Score=22.70 Aligned_cols=44 Identities=18% Similarity=0.118 Sum_probs=34.9
Q ss_pred HHHHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCcccee
Q psy4083 284 EQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGI 329 (374)
Q Consensus 284 e~~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~ak 329 (374)
-+.+..+.+ ..+++..+|+.+|++..-+-+.|..|...|-+.-.
T Consensus 35 ~~il~~L~~--~~~s~~ela~~l~is~stvsr~l~~Le~~Glv~~~ 78 (119)
T 2lkp_A 35 LMILTQLRN--GPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVVGD 78 (119)
T ss_dssp HHHHHHHHH--CCCCHHHHHHHHSSCHHHHHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHH--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 333444443 46899999999999999999999999998877543
No 376
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=36.05 E-value=1.2e+02 Score=24.73 Aligned_cols=51 Identities=12% Similarity=0.109 Sum_probs=39.1
Q ss_pred cCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy4083 132 GEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTT 187 (374)
Q Consensus 132 g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~ 187 (374)
.+..+++.++.++++ .++...-|....-.--+++.|||.+|+.+......+
T Consensus 57 ~d~~~GI~LLe~l~~-----~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 57 NDERLGVKILTDIYK-----EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp HHHHHHHHHHHHHHH-----HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHh-----cCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 456678777766664 345567787777888889999999999999987655
No 377
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=35.35 E-value=38 Score=28.30 Aligned_cols=41 Identities=12% Similarity=0.166 Sum_probs=33.4
Q ss_pred ceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEEe
Q psy4083 296 RVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVF 340 (374)
Q Consensus 296 ~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~~ 340 (374)
.++-..||..+|++.+.+-+.+.+|..+|-|. ...|.+.+.
T Consensus 167 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~----~~~~~i~i~ 207 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVGRILKMLEDQNLIS----AHGKTIVVY 207 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----EETTEEEEE
T ss_pred ccCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE----eCCCEEEEE
Confidence 57889999999999999999999999999664 234555543
No 378
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=35.18 E-value=28 Score=21.62 Aligned_cols=28 Identities=11% Similarity=0.114 Sum_probs=23.3
Q ss_pred cceeHHHHHhHhCCChHHHHHHHHHHhh
Q psy4083 295 SRVEVGFIAKSIKLDELAVEKKLSQMIL 322 (374)
Q Consensus 295 s~I~l~~lA~~l~ls~~~vE~~L~~lI~ 322 (374)
.-.+...+|+.||+|..-|.+++.+.-.
T Consensus 20 ~g~s~~~IA~~lgis~~Tv~~~~~~~~~ 47 (51)
T 1tc3_C 20 LNVSLHEMSRKISRSRHCIRVYLKDPVS 47 (51)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHCSTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHhhHHh
Confidence 4568999999999999999998876543
No 379
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=35.07 E-value=63 Score=25.09 Aligned_cols=52 Identities=17% Similarity=0.102 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeec
Q psy4083 278 LYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILD 331 (374)
Q Consensus 278 L~~~ire~~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID 331 (374)
|-+..|.+.+..+.. ...+...||+.+|+|..-+-+.|..|...|-+..+-|
T Consensus 18 L~~~~r~~IL~~L~~--~~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~ 69 (118)
T 2jsc_A 18 LADPTRCRILVALLD--GVCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATYE 69 (118)
T ss_dssp HSSHHHHHHHHHHHT--TCCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEEC
T ss_pred hCCHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEE
Confidence 333444444443332 3468899999999999999999999999999877544
No 380
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=34.98 E-value=43 Score=24.70 Aligned_cols=29 Identities=14% Similarity=0.084 Sum_probs=25.5
Q ss_pred ccceeHHHHHhHhCCChHHHHHHHHHHhh
Q psy4083 294 YSRVEVGFIAKSIKLDELAVEKKLSQMIL 322 (374)
Q Consensus 294 Ys~I~l~~lA~~l~ls~~~vE~~L~~lI~ 322 (374)
+.-.+...||+.+|+|+.-|...+.+...
T Consensus 42 ~~g~s~~eIA~~l~is~~tV~~~l~r~~~ 70 (91)
T 2rnj_A 42 AKGYSNQEIASASHITIKTVKTHVSNILS 70 (91)
T ss_dssp HTTCCTTHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 56788999999999999999999887764
No 381
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=34.56 E-value=2.9e+02 Score=25.87 Aligned_cols=97 Identities=15% Similarity=0.083 Sum_probs=55.1
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHh--cc------chhHHHHH---HHHHHHHHHhCCH--HHHHHHHHHHHhhcc
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKL--DD------KNLLVEVL---LLESKTYHALSNL--STSRASLTSARTTAN 189 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~--dd------~~~~lev~---l~ei~l~~~~~n~--~~a~~~~~~a~~~~~ 189 (374)
+.|.=++..|++++|+..+..+|..+.-. ++ -..+++++ ..-+++-...+.. .-.++.++.|.-.+.
T Consensus 119 k~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELAAYFT~ 198 (325)
T 3mv2_A 119 NEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELAAYFTK 198 (325)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHGGG
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhcc
Confidence 45656778899999999999998776532 22 23445442 2222222222211 122444455444432
Q ss_pred ccCCChhhhHHHHHHHHHHhhcccccHHHHHH
Q psy4083 190 SIYCPPKMQAALDLQSGILHAADEQDFKTAFS 221 (374)
Q Consensus 190 ~~~~~~~~~~~i~~~~G~~~~~~~rdy~~A~~ 221 (374)
--..++-+...++..++.. + ..+||.+|++
T Consensus 199 c~LQp~H~~LaLr~AM~~a-~-K~KNy~tAa~ 228 (325)
T 3mv2_A 199 AKLSPIHRTNALQVAMSQH-F-KHKNFLQASY 228 (325)
T ss_dssp SCCCHHHHHHHHHHHHHHH-H-HTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHH-H-HhhhHHHHHH
Confidence 2223445555778888775 4 5799999974
No 382
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=34.37 E-value=40 Score=28.67 Aligned_cols=42 Identities=17% Similarity=0.259 Sum_probs=33.8
Q ss_pred ceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEEec
Q psy4083 296 RVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFE 341 (374)
Q Consensus 296 ~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~~~ 341 (374)
.++-..||..+|++.+.+-+.+.+|..+|-|. ...|.|.+.+
T Consensus 187 ~lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~----~~~~~i~i~d 228 (230)
T 3iwz_A 187 RVSRQELARLVGCSREMAGRVLKKLQADGLLH----ARGKTVVLYG 228 (230)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----EETTEEEEEC
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEE----ECCCEEEEee
Confidence 36789999999999999999999999999764 2345555543
No 383
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=33.75 E-value=78 Score=23.12 Aligned_cols=46 Identities=9% Similarity=0.055 Sum_probs=32.8
Q ss_pred HHHHHHHhhccccceeHHHHHhHhC-----------CChHHHHHHHHHHhhcCccce
Q psy4083 283 LEQNLCRIIEPYSRVEVGFIAKSIK-----------LDELAVEKKLSQMILDKKFHG 328 (374)
Q Consensus 283 re~~l~~~~~pYs~I~l~~lA~~l~-----------ls~~~vE~~L~~lI~dgkl~a 328 (374)
-..-|.-.+..+.++.+++|...|. ++.++++..|.+++.+|++.+
T Consensus 9 ~w~yI~GMLtN~~slpl~RIh~mLkmf~~~~~~~~~it~~eL~~fL~~~v~e~kL~~ 65 (74)
T 1ldd_A 9 SLPFIEGMLTNLGAMKLHKIHSFLKITVPKDWGYNRITLQQLEGYLNTLADEGRLKY 65 (74)
T ss_dssp HHHHHHHHHHHHCSEEHHHHHHHHHHHSCGGGCCTTCCHHHHHHHHHHHHHTTSEEC
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCCCCcCCHHHHHHHHHHHHhCCeEEE
Confidence 3344455555567777877766552 355899999999999998864
No 384
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=33.71 E-value=53 Score=31.28 Aligned_cols=44 Identities=14% Similarity=0.196 Sum_probs=38.4
Q ss_pred HHHHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccc
Q psy4083 284 EQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFH 327 (374)
Q Consensus 284 e~~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~ 327 (374)
...+++++.....++-..||+.+|+|..-|-+.+.+|+.+|-+.
T Consensus 18 ~~~il~~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~~g~i~ 61 (406)
T 1z6r_A 18 AGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEAHLVQ 61 (406)
T ss_dssp HHHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEE
Confidence 34467777778999999999999999999999999999998774
No 385
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=33.64 E-value=43 Score=27.88 Aligned_cols=41 Identities=17% Similarity=0.223 Sum_probs=33.2
Q ss_pred ceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEEe
Q psy4083 296 RVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVF 340 (374)
Q Consensus 296 ~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~~ 340 (374)
.++-..||..+|++.+.+-+.+.+|..+|-|. ...|.|.+.
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~----~~~~~i~i~ 204 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVLKSLEEQGLVH----VKGKTMVVF 204 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE----EETTEEEEE
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----ecCCEEEEE
Confidence 57889999999999999999999999999763 223555543
No 386
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=33.56 E-value=1.5e+02 Score=25.59 Aligned_cols=54 Identities=9% Similarity=0.078 Sum_probs=42.2
Q ss_pred HHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEEecC
Q psy4083 286 NLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFEG 342 (374)
Q Consensus 286 ~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~~~~ 342 (374)
.|..+.+.-..++...||+.+|++...+-+.|.+|...|-+.-.=| +.|...+.
T Consensus 10 ~I~~l~~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~~~---~~i~LT~~ 63 (214)
T 3hrs_A 10 CLYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDKK---AGYLLTDL 63 (214)
T ss_dssp HHHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT---TEEEECHH
T ss_pred HHHHHHhcCCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCEEEecC---CCeEECHH
Confidence 3344555667899999999999999999999999999998865433 55666433
No 387
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=33.52 E-value=1.6e+02 Score=23.40 Aligned_cols=45 Identities=4% Similarity=0.087 Sum_probs=37.4
Q ss_pred ccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCe
Q psy4083 292 EPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKV 336 (374)
Q Consensus 292 ~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~gi 336 (374)
.+-..++...||+.++++..-+-+.+.+|...|-+.-.-|..++.
T Consensus 47 ~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~~~~DrR 91 (147)
T 4b8x_A 47 SKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRPNPNDGR 91 (147)
T ss_dssp SGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC----
T ss_pred CCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEeecCCcCc
Confidence 345679999999999999999999999999999999888877763
No 388
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=32.71 E-value=41 Score=28.48 Aligned_cols=45 Identities=7% Similarity=0.152 Sum_probs=35.5
Q ss_pred cceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEEecCC
Q psy4083 295 SRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFEGA 343 (374)
Q Consensus 295 s~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~~~~~ 343 (374)
-.++-..||..+|++.+.+-+.+.+|-.+|-|. ...|.+.+.+++
T Consensus 177 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~----~~~~~i~i~d~~ 221 (227)
T 3dkw_A 177 IPVAKQLVAGHLSIQPETFSRIMHRLGDEGIIH----LDGREISILDRE 221 (227)
T ss_dssp CCSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEE----ESSSCEEESCST
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHCCcEE----ecCCEEEEeCHH
Confidence 356789999999999999999999999999774 334556654443
No 389
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=32.54 E-value=46 Score=27.99 Aligned_cols=42 Identities=7% Similarity=0.160 Sum_probs=35.1
Q ss_pred ceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEEec
Q psy4083 296 RVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFE 341 (374)
Q Consensus 296 ~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~~~ 341 (374)
.++-..||..+|++.+.+-+.+.+|-.+|-|. ...|.+.+.+
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~----~~~~~i~i~d 210 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQVEGLVK----LSRGKITILD 210 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----EETTEEEESC
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----eCCCEEEEeC
Confidence 67889999999999999999999999999763 3456666643
No 390
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=32.19 E-value=55 Score=30.50 Aligned_cols=44 Identities=7% Similarity=-0.003 Sum_probs=37.3
Q ss_pred HHHHHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCcc
Q psy4083 283 LEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKF 326 (374)
Q Consensus 283 re~~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl 326 (374)
|...|+.++..-..++.+.||+.||+|..-+.+.|..|-..|-+
T Consensus 6 r~~~Il~~L~~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~~G~~ 49 (321)
T 1bia_A 6 VPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVD 49 (321)
T ss_dssp HHHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCc
Confidence 44556777766678999999999999999999999999887765
No 391
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=32.08 E-value=48 Score=24.50 Aligned_cols=29 Identities=24% Similarity=0.406 Sum_probs=25.2
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHh
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKL 151 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~ 151 (374)
++|+=|.-.|+|+.|+..|+.+++++.+.
T Consensus 17 k~ARe~Al~GnYdta~~yY~g~~~qI~k~ 45 (78)
T 2rpa_A 17 KLAREYALLGNYDSAMVYYQGVLDQMNKY 45 (78)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 57777777899999999999999988875
No 392
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=31.83 E-value=82 Score=27.03 Aligned_cols=43 Identities=9% Similarity=-0.128 Sum_probs=35.4
Q ss_pred ccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCe
Q psy4083 294 YSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKV 336 (374)
Q Consensus 294 Ys~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~gi 336 (374)
...++...||+.+|++..-+-+.|.+|...|-+.-.-|..++.
T Consensus 60 ~~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~~~~DrR 102 (207)
T 2fxa_A 60 LNGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRLNDKR 102 (207)
T ss_dssp HTSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC-----
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCc
Confidence 3579999999999999999999999999999998887766663
No 393
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=31.42 E-value=82 Score=22.42 Aligned_cols=44 Identities=11% Similarity=0.072 Sum_probs=36.7
Q ss_pred HHHHHhhccc--cceeHHHHHhHh-----CCChHHHHHHHHHHhhcCccce
Q psy4083 285 QNLCRIIEPY--SRVEVGFIAKSI-----KLDELAVEKKLSQMILDKKFHG 328 (374)
Q Consensus 285 ~~l~~~~~pY--s~I~l~~lA~~l-----~ls~~~vE~~L~~lI~dgkl~a 328 (374)
..++.++..- ..++...|++.+ ++|..-|-+.|..|...|-+.-
T Consensus 20 ~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~ 70 (83)
T 2fu4_A 20 LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTR 70 (83)
T ss_dssp HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEE
Confidence 4555666544 469999999999 9999999999999999998864
No 394
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=31.41 E-value=65 Score=23.65 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=23.7
Q ss_pred ccceeHHHHHhHhCCChHHHHHHHHHHh
Q psy4083 294 YSRVEVGFIAKSIKLDELAVEKKLSQMI 321 (374)
Q Consensus 294 Ys~I~l~~lA~~l~ls~~~vE~~L~~lI 321 (374)
|.-.+...||+.+|+|+.-|...+.+..
T Consensus 51 ~~g~s~~eIA~~lgis~~tV~~~l~ra~ 78 (92)
T 3hug_A 51 YRGWSTAQIATDLGIAEGTVKSRLHYAV 78 (92)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4566899999999999999998887654
No 395
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=31.14 E-value=36 Score=28.64 Aligned_cols=43 Identities=14% Similarity=0.060 Sum_probs=35.7
Q ss_pred cceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEEec
Q psy4083 295 SRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFE 341 (374)
Q Consensus 295 s~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~~~ 341 (374)
-.++...||..+|++.+.+-+.+.+|-.+|-|. ...|.+.+.+
T Consensus 162 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~----~~~~~i~i~d 204 (216)
T 4ev0_A 162 FQIRHHELAALAGTSRETVSRVLHALAEEGVVR----LGPGTVEVRE 204 (216)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE----EETTEEEESC
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----ecCCEEEEeC
Confidence 567899999999999999999999999999774 3456666643
No 396
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=30.97 E-value=60 Score=31.30 Aligned_cols=45 Identities=13% Similarity=0.161 Sum_probs=37.9
Q ss_pred HHHHHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccc
Q psy4083 283 LEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFH 327 (374)
Q Consensus 283 re~~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~ 327 (374)
-...+++++.....++-..||+.+|+|..-|-+.+.+|+.+|-+.
T Consensus 40 n~~~il~~l~~~~~~sr~ela~~~gls~~tv~~~v~~L~~~gli~ 84 (429)
T 1z05_A 40 NAGRVYKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLIH 84 (429)
T ss_dssp HHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 334456666667889999999999999999999999999998763
No 397
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=30.70 E-value=80 Score=22.04 Aligned_cols=42 Identities=12% Similarity=0.139 Sum_probs=34.6
Q ss_pred HHHhhccc-cceeHHHHHhHhCCChHHHHHHHHHHhhcCccce
Q psy4083 287 LCRIIEPY-SRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHG 328 (374)
Q Consensus 287 l~~~~~pY-s~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~a 328 (374)
++..+.+. .-++-..+|..||+|.+....-|-++..+|.+.-
T Consensus 8 LLall~s~~QGMTaGEVAA~f~w~Le~ar~aLeqLf~~G~LRK 50 (68)
T 3i71_A 8 LLALLTSVRQGMTAGEVAAHFGWPLEKARNALEQLFSAGTLRK 50 (68)
T ss_dssp HHHHHHHCTTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHhccccHHHHHHHhCCcHHHHHHHHHHHHhcchhhh
Confidence 44444444 5688999999999999999999999999998854
No 398
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=30.45 E-value=48 Score=28.76 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=35.2
Q ss_pred ceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEEecCC
Q psy4083 296 RVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFEGA 343 (374)
Q Consensus 296 ~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~~~~~ 343 (374)
.++-..||..+|++.+.+-+.|.+|..+|-|. ...|.|.+.+++
T Consensus 193 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~----~~~~~i~I~d~~ 236 (243)
T 3la7_A 193 KLSHQAIAEAIGSTRVTVTRLLGDLREKKMIS----IHKKKITVHKPV 236 (243)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----EETTEEEECC--
T ss_pred cCCHHHHHHHHCCcHHHHHHHHHHHHHCCCEE----EcCCEEEECCHH
Confidence 57789999999999999999999999999764 335666665544
No 399
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=30.32 E-value=46 Score=28.41 Aligned_cols=34 Identities=12% Similarity=0.008 Sum_probs=30.7
Q ss_pred ceeHHHHHhHhCCChHHHHHHHHHHhhcCcccee
Q psy4083 296 RVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGI 329 (374)
Q Consensus 296 ~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~ak 329 (374)
..++..||+.||++..-+-+.|..|-..|-|...
T Consensus 24 ~~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~~~ 57 (196)
T 3k2z_A 24 PPSVREIARRFRITPRGALLHLIALEKKGYIERK 57 (196)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECC
T ss_pred CCCHHHHHHHcCCCcHHHHHHHHHHHHCCCEEec
Confidence 4789999999999999999999999999988643
No 400
>2jxn_A Uncharacterized protein YMR074C; YMR074CP, PDCD5-like protein, phosphoprotein, unknown functi; HET: MTN; NMR {Saccharomyces cerevisiae}
Probab=29.89 E-value=12 Score=30.61 Aligned_cols=48 Identities=17% Similarity=0.197 Sum_probs=32.3
Q ss_pred HHHHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeec
Q psy4083 284 EQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILD 331 (374)
Q Consensus 284 e~~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID 331 (374)
...+.+++.|=-+=+|++|+=.=-=-...||..|.+|...|+|.++|+
T Consensus 43 ~~iL~qiL~peAreRL~rI~lVkPekA~~VE~~Li~lAq~Gql~~kVs 90 (127)
T 2jxn_A 43 GAAIANFLEPQALERLSRVALVRRDRAQAVETYLKKLIATNNVTHKIT 90 (127)
T ss_dssp THHHHTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSCBC
T ss_pred HHHHHHHcCHHHHHHHhcccccCHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 345667777765555555542111112579999999999999999876
No 401
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=29.59 E-value=74 Score=24.92 Aligned_cols=33 Identities=24% Similarity=0.074 Sum_probs=29.9
Q ss_pred ceeHHHHHhHhCCChHHHHHHHHHHhhcCccce
Q psy4083 296 RVEVGFIAKSIKLDELAVEKKLSQMILDKKFHG 328 (374)
Q Consensus 296 ~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~a 328 (374)
-.+...+|+.||++...+.+.+..+...|.+..
T Consensus 20 p~~~~~la~~~~~~~~~~~~~l~~l~~~G~l~~ 52 (121)
T 2pjp_A 20 PWWVRDLAKETGTDEQAMRLTLRQAAQQGIITA 52 (121)
T ss_dssp CEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEE
Confidence 347889999999999999999999999998865
No 402
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=29.17 E-value=73 Score=23.65 Aligned_cols=38 Identities=18% Similarity=0.192 Sum_probs=29.3
Q ss_pred HHHHHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhh
Q psy4083 283 LEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMIL 322 (374)
Q Consensus 283 re~~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~ 322 (374)
+++.++.++. .-.+...||+.+|+++.-|+..+.++..
T Consensus 33 rE~~Vl~l~~--~G~s~~eIA~~L~iS~~TV~~~~~~i~~ 70 (90)
T 3ulq_B 33 RECLILQEVE--KGFTNQEIADALHLSKRSIEYSLTSIFN 70 (90)
T ss_dssp HHHHHHHHHH--TTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3444444443 6678999999999999999999988754
No 403
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=29.08 E-value=1e+02 Score=27.01 Aligned_cols=41 Identities=12% Similarity=0.166 Sum_probs=33.5
Q ss_pred ceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEEe
Q psy4083 296 RVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVF 340 (374)
Q Consensus 296 ~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~~ 340 (374)
.++-..||..+|++.+.+-+.+.+|..+|-|. ...|.|.+.
T Consensus 217 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~----~~~~~i~I~ 257 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVGRILKMLEDQNLIS----AHGKTIVVY 257 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----ECSSEEEEC
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----EcCCEEEEE
Confidence 57789999999999999999999999998664 344555553
No 404
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=28.82 E-value=45 Score=28.42 Aligned_cols=42 Identities=7% Similarity=0.096 Sum_probs=34.5
Q ss_pred ceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEEec
Q psy4083 296 RVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFE 341 (374)
Q Consensus 296 ~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~~~ 341 (374)
.++...||..+|++.+.+-+.+.+|..+|-|. ...|.+.+.+
T Consensus 175 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~----~~~~~i~i~d 216 (231)
T 3e97_A 175 PLGTQDIMARTSSSRETVSRVLKRLEAHNILE----VSPRSVTLLD 216 (231)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----ECSSCEEESC
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE----ecCCEEEEeC
Confidence 57889999999999999999999999999764 3345666643
No 405
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=28.68 E-value=54 Score=22.58 Aligned_cols=29 Identities=3% Similarity=0.067 Sum_probs=25.7
Q ss_pred ccceeHHHHHhHhCCChHHHHHHHHHHhh
Q psy4083 294 YSRVEVGFIAKSIKLDELAVEKKLSQMIL 322 (374)
Q Consensus 294 Ys~I~l~~lA~~l~ls~~~vE~~L~~lI~ 322 (374)
+...+...||+.+|+|+..|...+.+...
T Consensus 23 ~~g~s~~eIA~~lgis~~tV~~~~~ra~~ 51 (68)
T 2p7v_B 23 NTDYTLEEVGKQFDVTRERIRQIEAKALR 51 (68)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 47889999999999999999999887764
No 406
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=28.51 E-value=42 Score=28.54 Aligned_cols=42 Identities=14% Similarity=0.128 Sum_probs=34.6
Q ss_pred ceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEEec
Q psy4083 296 RVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFE 341 (374)
Q Consensus 296 ~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~~~ 341 (374)
.++-..||..+|++.+.+-+.+.+|..+|-|. ...|.+.+.+
T Consensus 177 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~----~~~~~i~i~d 218 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVNKALADFAHRGWIR----LEGKSVLISD 218 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE----EETTEEEESC
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEE----ecCCEEEEcC
Confidence 47889999999999999999999999999663 3446666644
No 407
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=28.34 E-value=2.9e+02 Score=23.92 Aligned_cols=90 Identities=21% Similarity=0.205 Sum_probs=57.1
Q ss_pred HHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHH-----
Q psy4083 127 LYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAAL----- 201 (374)
Q Consensus 127 ~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i----- 201 (374)
.++=.|+|..|+-.+ ++....+. + ..+.--|...+|+++|...++...+- .+-.+|.+.+++
T Consensus 42 ~LyyngEY~R~Lf~L-------~~lNT~Ts---~-YYk~LCy~klKdYkkA~~~le~il~~--kvd~d~~~d~~~~~ffv 108 (242)
T 3kae_A 42 VLYLNGEYTRALFHL-------HKLNTCTS---K-YYESLCYKKKKDYKKAIKSLESILEG--KVERDPDVDARIQEMFV 108 (242)
T ss_dssp HHHHTTCHHHHHHHH-------HTCCBHHH---H-HHHHHHHHHTTCHHHHHHHHHHHHTT--CSBCCCCCCHHHHTTSC
T ss_pred hhhhcchHhHHHHHH-------HhcchHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHhc--ccccCcccccccceeee
Confidence 344559999996543 22222111 1 23344456889999999888886543 333566665544
Q ss_pred --------HHHHHHHhhcccccHHHHHHHHHHhccCc
Q psy4083 202 --------DLQSGILHAADEQDFKTAFSYFYEAFEGF 230 (374)
Q Consensus 202 --------~~~~G~~~~~~~rdy~~A~~~F~eaf~~f 230 (374)
....|.+.- ..++-++|..+|.-+|..+
T Consensus 109 d~~DkEfFy~l~a~llt-q~g~r~EaI~y~~~Sf~~~ 144 (242)
T 3kae_A 109 DPGDEEFFESLLGDLCT-LSGYREEGIGHYVRSFGKS 144 (242)
T ss_dssp CTTCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHC
T ss_pred ccchHHHHHHHHHHHHH-HhcCHHHhhhHhhhhcCCc
Confidence 456677766 7788888888888887643
No 408
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=28.15 E-value=1.6e+02 Score=24.83 Aligned_cols=113 Identities=15% Similarity=0.091 Sum_probs=67.0
Q ss_pred HHHhCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhc----cccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy4083 48 YKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLD----LETRTGMEVALCKECIEWAKEERRTFLRQSLEAR 123 (374)
Q Consensus 48 ~~~~~~~~~l~~~l~~l~~~~~~~~k~~~~k~i~~ild~~~~----~~~~~~~~~~l~~e~i~~~~~~~r~~lr~~l~~k 123 (374)
...-++||.-..++..+.+. +.. .+...+.+++|.+.. +|- + + . ...|-|.+.++ +
T Consensus 7 ~~~p~~yd~W~~yl~llE~~-g~p---~~d~~l~rlrd~YerAia~~Pp--~-k------~-----~~wrrYI~LWI--r 66 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKN-SVP---LSDALLNKLIGRYSQAIEALPP--D-K------Y-----GQNESFARIQV--R 66 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHH-TCS---CCHHHHHHHHHHHHHHHHHSCG--G-G------G-----TTCHHHHHHHH--H
T ss_pred eeCCCCHHHHHHHHHHHHHc-CCC---chhhHHHHHHHHHHHHHHcCCc--c-c------c-----ccHHHHHHHHH--H
Confidence 44567777777777666655 221 112444455554432 221 1 1 0 12355556665 4
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy4083 124 LIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTT 187 (374)
Q Consensus 124 La~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~ 187 (374)
.| .|.+.+|.++|-..+..++.- ++ .+ --+++.-.+.-..++|..+|+..+.+|...
T Consensus 67 YA-~~~ei~D~d~aR~vy~~a~~~-hK----kF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~ 123 (161)
T 4h7y_A 67 FA-ELKAIQEPDDARDYFQMARAN-CK----KF-AFVHISFAQFELSQGNVKKSKQLLQKAVER 123 (161)
T ss_dssp HH-HHHHHHCGGGCHHHHHHHHHH-CT----TB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HH-HHHHhcCHHHHHHHHHHHHHH-hH----HH-HHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 55 346779999998877777653 22 23 445556666777899999999999998764
No 409
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=28.02 E-value=2.1e+02 Score=27.09 Aligned_cols=73 Identities=12% Similarity=0.006 Sum_probs=50.2
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcc---ccCCChhhhH
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTAN---SIYCPPKMQA 199 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~---~~~~~~~~~~ 199 (374)
.++..++..|++.+|+..+..++. .+.-.+ +++..-|+.++..|+...|...|...+..-. .+-+.|.++.
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~----~~P~~E--~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTF----EHPYRE--PLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH----HSTTCH--HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH----hCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 678889999999999766655542 222222 3677788899999999999999988765321 2334556655
Q ss_pred HH
Q psy4083 200 AL 201 (374)
Q Consensus 200 ~i 201 (374)
.+
T Consensus 250 l~ 251 (388)
T 2ff4_A 250 LN 251 (388)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 410
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=27.97 E-value=46 Score=26.52 Aligned_cols=35 Identities=3% Similarity=-0.033 Sum_probs=31.4
Q ss_pred eeHHHHHhHhCCChHHHHHHHHHHhhcCccceeec
Q psy4083 297 VEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILD 331 (374)
Q Consensus 297 I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID 331 (374)
++.+.||+.+|+++..|.+.|..|+..|-|.=+-|
T Consensus 52 ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~ 86 (128)
T 2vn2_A 52 PTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEH 86 (128)
T ss_dssp CCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC-
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeE
Confidence 79999999999999999999999999998866544
No 411
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=27.79 E-value=67 Score=23.74 Aligned_cols=35 Identities=14% Similarity=0.206 Sum_probs=31.2
Q ss_pred cccceeHHHHHhHh-CCChHHHHHHHHHHhhcCccc
Q psy4083 293 PYSRVEVGFIAKSI-KLDELAVEKKLSQMILDKKFH 327 (374)
Q Consensus 293 pYs~I~l~~lA~~l-~ls~~~vE~~L~~lI~dgkl~ 327 (374)
+=+..-+..+++.| +..+-+|.+.+..||.+|++.
T Consensus 18 ~KskfYf~D~~k~~P~~k~r~vKK~~~~LV~Eg~le 53 (78)
T 1ucr_A 18 SKSKFYFNDFTDLFPDMKQREVKKILTALVNDEVLE 53 (78)
T ss_dssp HSSCEEHHHHHHHCTTSCHHHHHHHHHHHHHTTSEE
T ss_pred ccccchHHHHHHHccccCHHHHHHHHHHHHhcCceE
Confidence 34677899999999 999999999999999999873
No 412
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=27.66 E-value=54 Score=28.16 Aligned_cols=44 Identities=14% Similarity=0.232 Sum_probs=35.1
Q ss_pred cceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEEecC
Q psy4083 295 SRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFEG 342 (374)
Q Consensus 295 s~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~~~~ 342 (374)
-.++-..||+.+|++.+.+-+.+.+|..+|-|. ...|.|.+.++
T Consensus 185 ~~~t~~~lA~~lG~sr~tvsR~l~~l~~~glI~----~~~~~i~I~d~ 228 (232)
T 1zyb_A 185 FKVKMDDLARCLDDTRLNISKTLNELQDNGLIE----LHRKEILIPDA 228 (232)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCE----EETTEEEESCG
T ss_pred ecCCHHHHHHHhCCChhHHHHHHHHHHHCCCEE----ecCCEEEEeCh
Confidence 357899999999999999999999999999774 22455665443
No 413
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=27.37 E-value=3.9e+02 Score=24.99 Aligned_cols=97 Identities=19% Similarity=0.208 Sum_probs=58.2
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHh--cc------chhHHHHH---HHHHHHHHHhCCH-----HHHHHHHHHHHh
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKL--DD------KNLLVEVL---LLESKTYHALSNL-----STSRASLTSART 186 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~--dd------~~~~lev~---l~ei~l~~~~~n~-----~~a~~~~~~a~~ 186 (374)
+.|.=++..|++++|+..+..+|..+.-. ++ -..+++++ ..-+++-...+.. ...++.++.|.-
T Consensus 107 k~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~lELAAY 186 (320)
T 3mkr_B 107 QLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRICEMAAY 186 (320)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHHHH
Confidence 45656778899999999999998766432 22 23455533 2223333333432 344556666654
Q ss_pred hccccCCChhhhHHHHHHHHHHhhcccccHHHHHH
Q psy4083 187 TANSIYCPPKMQAALDLQSGILHAADEQDFKTAFS 221 (374)
Q Consensus 187 ~~~~~~~~~~~~~~i~~~~G~~~~~~~rdy~~A~~ 221 (374)
.+.--..++-+...++..++.. + ..+||.+|++
T Consensus 187 FT~c~Lqp~H~~LaLr~AM~~a-~-K~KNy~tAa~ 219 (320)
T 3mkr_B 187 FTHSNLQPVHMILVLRTALNLF-F-KLKNFRTAAA 219 (320)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHH-H-HTTBHHHHHH
T ss_pred hccCCCcHHHHHHHHHHHHHHH-H-HhhhHHHHHH
Confidence 4322223345555778888775 4 5799999874
No 414
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=27.19 E-value=50 Score=26.75 Aligned_cols=26 Identities=15% Similarity=0.140 Sum_probs=23.6
Q ss_pred ccceeHHHHHhHhCCChHHHHHHHHH
Q psy4083 294 YSRVEVGFIAKSIKLDELAVEKKLSQ 319 (374)
Q Consensus 294 Ys~I~l~~lA~~l~ls~~~vE~~L~~ 319 (374)
|-+.+++.+|+.+|++.++||+.+..
T Consensus 37 YL~~~l~eia~~l~~~~~eve~vL~~ 62 (130)
T 2k9m_A 37 FLSKSVEEISDVLRCSVEELEKVRQK 62 (130)
T ss_dssp SBSSCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCCHHHHHHHHHH
Confidence 88899999999999999999987754
No 415
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=26.94 E-value=1.6e+02 Score=23.56 Aligned_cols=38 Identities=5% Similarity=-0.038 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhhhh
Q psy4083 36 AKEQNILQLGEKYKQEGKAIELAELIKKTRPFLSQISK 73 (374)
Q Consensus 36 ~~e~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~k 73 (374)
.....+|.++--+++.|+|+....++..+...-|.-..
T Consensus 72 ~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 72 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ 109 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHH
Confidence 45678999999999999999999888888877665533
No 416
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=26.43 E-value=35 Score=25.47 Aligned_cols=47 Identities=15% Similarity=0.197 Sum_probs=33.3
Q ss_pred HHHHHHHhhccccceeHHHHHhHhCCC--hHHHHHHHHHHhhcCccceeec
Q psy4083 283 LEQNLCRIIEPYSRVEVGFIAKSIKLD--ELAVEKKLSQMILDKKFHGILD 331 (374)
Q Consensus 283 re~~l~~~~~pYs~I~l~~lA~~l~ls--~~~vE~~L~~lI~dgkl~akID 331 (374)
+...+.+++.|=-+=+|++|+ +-=| ...||..|.+|...|+|.++||
T Consensus 9 r~~iL~qiL~~eAreRL~rI~--lvKPe~A~~VE~~Li~lAq~Gqi~~ki~ 57 (80)
T 1eij_A 9 KKQIMMQILTPEARSRLANLR--LTRPDFVEQIELQLIQLAQMGRVRSKIT 57 (80)
T ss_dssp SHHHHTTTCCHHHHHHHHHHT--TTCHHHHHHHHHHHHHHHHCCSSCCCCC
T ss_pred HHHHHHHHcCHHHHHHHHhhh--hcCHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 445667777776655555553 1112 2579999999999999999987
No 417
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=26.14 E-value=43 Score=27.85 Aligned_cols=42 Identities=14% Similarity=0.094 Sum_probs=34.2
Q ss_pred ceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEEec
Q psy4083 296 RVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFE 341 (374)
Q Consensus 296 ~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~~~ 341 (374)
.++-..||..+|++.+.+-+.+.+|..+|-|. ...|.+.+.+
T Consensus 139 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~----~~~~~i~i~d 180 (195)
T 3b02_A 139 TVSHEEIADATASIRESVSKVLADLRREGLIA----TAYRRVYLLD 180 (195)
T ss_dssp ECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEE----EETTEEEECC
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----ecCCEEEEeC
Confidence 46788999999999999999999999999764 3346666644
No 418
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=26.05 E-value=51 Score=27.50 Aligned_cols=42 Identities=10% Similarity=0.139 Sum_probs=34.6
Q ss_pred ceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEEec
Q psy4083 296 RVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFE 341 (374)
Q Consensus 296 ~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~~~ 341 (374)
.++-..||..+|++.+.+-+.+.+|..+|-|. ...|.|.+.+
T Consensus 146 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~----~~~~~i~i~d 187 (202)
T 2zcw_A 146 KATHDELAAAVGSVRETVTKVIGELAREGYIR----SGYGKIQLLD 187 (202)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----EETTEEEESC
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----eCCCEEEEeC
Confidence 46789999999999999999999999999775 3346666643
No 419
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=25.93 E-value=54 Score=20.97 Aligned_cols=25 Identities=8% Similarity=0.096 Sum_probs=21.0
Q ss_pred ceeHHHHHhHhCCChHHHHHHHHHH
Q psy4083 296 RVEVGFIAKSIKLDELAVEKKLSQM 320 (374)
Q Consensus 296 ~I~l~~lA~~l~ls~~~vE~~L~~l 320 (374)
.+++..+|+.+|++..++-..+.++
T Consensus 2 k~rv~~lAkel~~~~k~l~~~l~~~ 26 (49)
T 1nd9_A 2 DVTIKTLAAERQTSVERLVQQFADA 26 (49)
T ss_dssp EECTTHHHHHHSSSHHHHHHHHHHH
T ss_pred cccHHHHHHHHCcCHHHHHHHHHHc
Confidence 4678899999999999888777664
No 420
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=25.78 E-value=51 Score=28.09 Aligned_cols=43 Identities=9% Similarity=0.103 Sum_probs=35.0
Q ss_pred cceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEEec
Q psy4083 295 SRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFE 341 (374)
Q Consensus 295 s~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~~~ 341 (374)
-.++-..||..+|++.+.+-+.+.+|..+|-|. ...|.|.+.+
T Consensus 179 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~----~~~~~i~i~d 221 (232)
T 2gau_A 179 IYLSREELATLSNMTVSNAIRTLSTFVSERMLA----LDGKRIKIID 221 (232)
T ss_dssp CCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEE----EETTEEEESC
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEe----eCCCEEEEeC
Confidence 467889999999999999999999999998763 3345666643
No 421
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=25.75 E-value=2.3e+02 Score=21.84 Aligned_cols=57 Identities=18% Similarity=0.109 Sum_probs=41.7
Q ss_pred HHHHHHHh----ccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhh
Q psy4083 123 RLIALYFD----TGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHA----LSNLSTSRASLTSARTT 187 (374)
Q Consensus 123 kLa~~~~~----~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~----~~n~~~a~~~~~~a~~~ 187 (374)
.|+.+|.. .+|+++|++.+.+... ..+ .+-+..--.+|.. .+|+.++..++.+|-..
T Consensus 62 ~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~----~g~----~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 62 FLGDFYENGKYVKKDLRKAAQYYSKACG----LND----QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHCSSSCCCHHHHHHHHHHHHH----TTC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCccHHHHHHHHHHHHc----CCC----HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 58888988 8899999888776642 111 2344555667777 78999999999998544
No 422
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=25.66 E-value=1.2e+02 Score=27.06 Aligned_cols=46 Identities=9% Similarity=0.020 Sum_probs=37.9
Q ss_pred cccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEEe
Q psy4083 293 PYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVF 340 (374)
Q Consensus 293 pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~~ 340 (374)
....+++..||+.+|+|..-+-+.|..|...|-+... ...+.+...
T Consensus 163 ~~~~~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r~--~r~~~~~LT 208 (244)
T 2wte_A 163 ETKGTGITELAKMLDKSEKTLINKIAELKKFGILTQK--GKDRKVELN 208 (244)
T ss_dssp HHTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTTEEEEC
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe--CCccEEEEC
Confidence 3467999999999999999999999999999988764 345555553
No 423
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=25.37 E-value=4.5e+02 Score=25.10 Aligned_cols=100 Identities=12% Similarity=0.065 Sum_probs=55.1
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhhhhhh-hHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHH---Hh--hHHH
Q psy4083 42 LQLGEKYKQEGKAIELAELIKKTRPFLSQIS-KAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAK---EE--RRTF 115 (374)
Q Consensus 42 ~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~-k~~~~k~i~~ild~~~~~~~~~~~~~~l~~e~i~~~~---~~--~r~~ 115 (374)
.+++++|++.|+|.++.+++..++..+..+. +...-.+----+.......+ +.-++..+..+. +. ..--
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n-----~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSN-----LPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcc-----HHHHHHHHHHHHhhhccCCCCHH
Confidence 3789999999999999999999988876654 22222222222222211111 112222222221 01 1112
Q ss_pred HHHHHHHHHHHHHH-hccCHHHHHHHHHHHHH
Q psy4083 116 LRQSLEARLIALYF-DTGEYTEALKLSSSLLK 146 (374)
Q Consensus 116 lr~~l~~kLa~~~~-~~g~~~~Al~~~~~ll~ 146 (374)
+...+..--|.++. ..++|..|.+.+-+...
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 34444434566778 89999999776655543
No 424
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.94 E-value=50 Score=24.01 Aligned_cols=32 Identities=16% Similarity=0.117 Sum_probs=26.9
Q ss_pred cceeHHHHHhHhCCChHHHHHHHHHHhhcCccc
Q psy4083 295 SRVEVGFIAKSIKLDELAVEKKLSQMILDKKFH 327 (374)
Q Consensus 295 s~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~ 327 (374)
+.=++..||+.+|++.+.|..|-.++-. |++.
T Consensus 31 s~eei~~LA~~lgL~~~VVrVWFqNrRa-~~~~ 62 (71)
T 2da7_A 31 NSDELLKISIAVGLPQEFVKEWFEQRKV-YQYS 62 (71)
T ss_dssp CHHHHHHHHHHHTCCHHHHHHHHHHHHH-HHHS
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHhhccc-cccC
Confidence 7778999999999999999999988763 4443
No 425
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=24.51 E-value=64 Score=27.25 Aligned_cols=42 Identities=12% Similarity=0.096 Sum_probs=34.0
Q ss_pred ceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCC-CCeEEEec
Q psy4083 296 RVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQG-EKVLIVFE 341 (374)
Q Consensus 296 ~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~-~giv~~~~ 341 (374)
.++-..||+.+|++.+.+-+.+.+|..+|-| ... .|.+.+.+
T Consensus 167 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I----~~~~~~~i~i~d 209 (220)
T 2fmy_A 167 GLNTEEIALMLGTTRQTVSVLLNDFKKMGIL----ERVNQRTLLLKD 209 (220)
T ss_dssp SSCHHHHHHHHTSCHHHHHHHHHHHHHTTSE----EESSSSEEEESC
T ss_pred cCCHHHHHHHhCCcHHHHHHHHHHHHHCCCE----EEcCCCEEEEcC
Confidence 5788999999999999999999999999865 343 45666643
No 426
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=24.06 E-value=1.7e+02 Score=24.16 Aligned_cols=51 Identities=12% Similarity=0.109 Sum_probs=37.3
Q ss_pred cCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy4083 132 GEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTT 187 (374)
Q Consensus 132 g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~ 187 (374)
.+..+++.++.++++ .++...-|....-.--+++++||.+|+.+......+
T Consensus 56 ~di~~GI~LLe~l~~-----~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 56 NDERLGVKILTDIYK-----EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp HHHHHHHHHHHHHHH-----HCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh-----cCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 355677766666664 344456677777777788999999999999988765
No 427
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=23.98 E-value=89 Score=23.43 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=22.0
Q ss_pred cceeHHHHHhHhCCChHHHHHHHHHH
Q psy4083 295 SRVEVGFIAKSIKLDELAVEKKLSQM 320 (374)
Q Consensus 295 s~I~l~~lA~~l~ls~~~vE~~L~~l 320 (374)
..++++.||+.+|+|+..+.+...+.
T Consensus 19 ~~~~~~~lA~~~~~S~~~l~r~fk~~ 44 (107)
T 2k9s_A 19 SNFDIASVAQHVCLSPSRLSHLFRQQ 44 (107)
T ss_dssp SSCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 47999999999999999888776554
No 428
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=23.90 E-value=97 Score=23.61 Aligned_cols=28 Identities=4% Similarity=0.086 Sum_probs=23.7
Q ss_pred cceeHHHHHhHhCCChHHHHHHHHHHhh
Q psy4083 295 SRVEVGFIAKSIKLDELAVEKKLSQMIL 322 (374)
Q Consensus 295 s~I~l~~lA~~l~ls~~~vE~~L~~lI~ 322 (374)
...++..||+.+|+|.+.|...+.+.+.
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~rAlk 65 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEAKALR 65 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5688999999999999999887766543
No 429
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=23.84 E-value=1.3e+02 Score=27.68 Aligned_cols=39 Identities=8% Similarity=0.020 Sum_probs=34.3
Q ss_pred ccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecC
Q psy4083 294 YSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQ 332 (374)
Q Consensus 294 Ys~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~ 332 (374)
-..++...||+.||+|...|-+.|..+-..|.+.=++..
T Consensus 19 ~~~~~~~ela~~l~vS~~tIrRdL~~l~~~G~v~iri~g 57 (315)
T 2w48_A 19 EQDMTQAQIARELGIYRTTISRLLKRGREQGIVTIAINY 57 (315)
T ss_dssp TSCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEecC
Confidence 367999999999999999999999999999988755544
No 430
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=23.60 E-value=3.2e+02 Score=27.43 Aligned_cols=85 Identities=15% Similarity=0.114 Sum_probs=40.3
Q ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcc-----ccCCChhhhH
Q psy4083 125 IALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTAN-----SIYCPPKMQA 199 (374)
Q Consensus 125 a~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~-----~~~~~~~~~~ 199 (374)
..+..+.|++++|+++... .+++ ...-.-.+++...+|+..|...|.++..... ....+++.
T Consensus 659 f~~~l~~~~~~~A~~~~~~-------~~~~----~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~-- 725 (814)
T 3mkq_A 659 FELALKVGQLTLARDLLTD-------ESAE----MKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEG-- 725 (814)
T ss_dssp HHHHHHHTCHHHHHHHHTT-------CCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHH--
T ss_pred eehhhhcCCHHHHHHHHHh-------hCcH----hHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHH--
Confidence 3455667888888654321 1222 2333344555556666666666655422210 00011111
Q ss_pred HHHHHHHHHhhcccccHHHHHHHHHH
Q psy4083 200 ALDLQSGILHAADEQDFKTAFSYFYE 225 (374)
Q Consensus 200 ~i~~~~G~~~~~~~rdy~~A~~~F~e 225 (374)
+ ...+.+.. ..++|..|...|+.
T Consensus 726 -~-~~~~~~a~-~~~~~~~A~~~~~~ 748 (814)
T 3mkq_A 726 -L-VTLAKDAE-TTGKFNLAFNAYWI 748 (814)
T ss_dssp -H-HHHHHHHH-HTTCHHHHHHHHHH
T ss_pred -H-HHHHHHHH-HcCchHHHHHHHHH
Confidence 1 12234445 56777777766665
No 431
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=23.32 E-value=2.3e+02 Score=20.91 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=31.4
Q ss_pred cceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeec
Q psy4083 295 SRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILD 331 (374)
Q Consensus 295 s~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID 331 (374)
...+...+|+.+|+|..-+-..|..|-.. -+..+-+
T Consensus 40 ~~~~~~ela~~l~is~stvs~hL~~L~~~-lv~~~~~ 75 (99)
T 2zkz_A 40 KALNVTQIIQILKLPQSTVSQHLCKMRGK-VLKRNRQ 75 (99)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHBTT-TBEEEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHH-hhhheEe
Confidence 56899999999999999999999999988 7766544
No 432
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=23.28 E-value=76 Score=27.03 Aligned_cols=41 Identities=7% Similarity=0.062 Sum_probs=32.7
Q ss_pred eeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEEecC
Q psy4083 297 VEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFEG 342 (374)
Q Consensus 297 I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~~~~ 342 (374)
++-..||..+|++.+.+-+.+.+|..+| | .. ..|.|.+.++
T Consensus 179 ~t~~~iA~~lg~sr~tvsR~l~~L~~~g-i--~~--~~~~i~I~d~ 219 (237)
T 3fx3_A 179 YDKMLIAGRLGMKPESLSRAFSRLKAAG-V--TV--KRNHAEIEDI 219 (237)
T ss_dssp SCTHHHHHHTTCCHHHHHHHHHHHGGGT-E--EC--CTTEEEESCH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCC-e--Ee--eCCEEEEcCH
Confidence 4467899999999999999999999999 6 33 3466666433
No 433
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=23.18 E-value=76 Score=21.47 Aligned_cols=28 Identities=4% Similarity=-0.098 Sum_probs=23.6
Q ss_pred ccceeHHHHHhHhCCChHHHHHHHHHHh
Q psy4083 294 YSRVEVGFIAKSIKLDELAVEKKLSQMI 321 (374)
Q Consensus 294 Ys~I~l~~lA~~l~ls~~~vE~~L~~lI 321 (374)
+...+...+|+.+|+|+..|...+.+..
T Consensus 29 ~~g~s~~eIA~~lgis~~tv~~~~~ra~ 56 (70)
T 2o8x_A 29 LLGLSYADAAAVCGCPVGTIRSRVARAR 56 (70)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4567899999999999999998877754
No 434
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=23.05 E-value=1.1e+02 Score=22.57 Aligned_cols=25 Identities=4% Similarity=0.139 Sum_probs=21.6
Q ss_pred ceeHHHHHhHhCCChHHHHHHHHHH
Q psy4083 296 RVEVGFIAKSIKLDELAVEKKLSQM 320 (374)
Q Consensus 296 ~I~l~~lA~~l~ls~~~vE~~L~~l 320 (374)
.++++.||+.+|+|+..+.+.+-+.
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 6899999999999999888776554
No 435
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=22.89 E-value=13 Score=30.91 Aligned_cols=47 Identities=11% Similarity=0.116 Sum_probs=39.5
Q ss_pred HHHHHHHHHhhccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccce
Q psy4083 281 NMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHG 328 (374)
Q Consensus 281 ~ire~~l~~~~~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~a 328 (374)
.++...+. .+.|-.+++...||+.||+|...+-+-+.+|..+|-+..
T Consensus 13 ~l~~~Il~-~l~~~~~ls~~eLa~~lgvSr~~vr~al~~L~~~Gli~~ 59 (163)
T 2gqq_A 13 RIDRNILN-ELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQG 59 (163)
T ss_dssp SHHHHHHH-HHHHCSSCCTTGGGTSSSCCTTTSSSTHHHHHHHTSEEE
T ss_pred HHHHHHHH-HHHhCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 34444444 778889999999999999999999999999999998864
No 436
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=22.84 E-value=2.7e+02 Score=22.98 Aligned_cols=36 Identities=6% Similarity=-0.062 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhhh
Q psy4083 36 AKEQNILQLGEKYKQEGKAIELAELIKKTRPFLSQI 71 (374)
Q Consensus 36 ~~e~~~~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~ 71 (374)
...+++|.++--+++.|+|+...+++..+...-|.-
T Consensus 69 ~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 69 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred chHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 346789999999999999999999888888776654
No 437
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=22.26 E-value=1e+02 Score=23.42 Aligned_cols=29 Identities=14% Similarity=0.092 Sum_probs=24.4
Q ss_pred ccceeHHHHHhHhCCChHHHHHHHHHHhh
Q psy4083 294 YSRVEVGFIAKSIKLDELAVEKKLSQMIL 322 (374)
Q Consensus 294 Ys~I~l~~lA~~l~ls~~~vE~~L~~lI~ 322 (374)
+.-.+...||+.+|+++.-|...+.++..
T Consensus 47 ~~G~s~~EIA~~L~iS~~TV~~~l~ri~~ 75 (99)
T 1p4w_A 47 AEGFLVTEIAKKLNRSIKTISSQKKSAMM 75 (99)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 35667899999999999999998887654
No 438
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=22.20 E-value=3.2e+02 Score=27.46 Aligned_cols=77 Identities=12% Similarity=-0.041 Sum_probs=46.4
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccccCCChhhhHHHH
Q psy4083 123 RLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALD 202 (374)
Q Consensus 123 kLa~~~~~~g~~~~Al~~~~~ll~el~~~dd~~~~lev~l~ei~l~~~~~n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~ 202 (374)
+||+.+++.|+++.|.++|..+ .|-.. -..++...+|..++......+... +.+.
T Consensus 686 ~la~~al~~~~~~~A~~~y~~~-------~d~~~-------l~~l~~~~~~~~~~~~~~~~a~~~-----------~~~~ 740 (814)
T 3mkq_A 686 ALGDASLQRFNFKLAIEAFTNA-------HDLES-------LFLLHSSFNNKEGLVTLAKDAETT-----------GKFN 740 (814)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH-------TCHHH-------HHHHHHHTTCHHHHHHHHHHHHHT-----------TCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHc-------cChhh-------hHHHHHHcCCHHHHHHHHHHHHHc-----------CchH
Confidence 6899999999999997777544 22211 123444577777776555554332 1111
Q ss_pred HHHHHHhhcccccHHHHHHHHHHh
Q psy4083 203 LQSGILHAADEQDFKTAFSYFYEA 226 (374)
Q Consensus 203 ~~~G~~~~~~~rdy~~A~~~F~ea 226 (374)
.....++ ..+++++|...|.++
T Consensus 741 -~A~~~~~-~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 741 -LAFNAYW-IAGDIQGAKDLLIKS 762 (814)
T ss_dssp -HHHHHHH-HHTCHHHHHHHHHHT
T ss_pred -HHHHHHH-HcCCHHHHHHHHHHc
Confidence 1223344 567888887776664
No 439
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=22.15 E-value=1.2e+02 Score=22.57 Aligned_cols=26 Identities=4% Similarity=0.082 Sum_probs=21.7
Q ss_pred cceeHHHHHhHhCCChHHHHHHHHHH
Q psy4083 295 SRVEVGFIAKSIKLDELAVEKKLSQM 320 (374)
Q Consensus 295 s~I~l~~lA~~l~ls~~~vE~~L~~l 320 (374)
..++++.||+.+|+|+..+.+..-+.
T Consensus 17 ~~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 17 RPITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 45899999999999998888776554
No 440
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=22.11 E-value=68 Score=27.14 Aligned_cols=32 Identities=19% Similarity=0.150 Sum_probs=29.1
Q ss_pred ceeHHHHHhHhCCChHHHHHHHHHHhhcCccc
Q psy4083 296 RVEVGFIAKSIKLDELAVEKKLSQMILDKKFH 327 (374)
Q Consensus 296 ~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~ 327 (374)
.++-..||..+|++.+.+-+.+.+|..+|-|.
T Consensus 163 ~~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~ 194 (222)
T 1ft9_A 163 DFTVEEIANLIGSSRQTTSTALNSLIKEGYIS 194 (222)
T ss_dssp CCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSE
T ss_pred cCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE
Confidence 37889999999999999999999999999763
No 441
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=22.08 E-value=1e+02 Score=25.42 Aligned_cols=40 Identities=3% Similarity=0.077 Sum_probs=32.5
Q ss_pred ceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCC
Q psy4083 296 RVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEK 335 (374)
Q Consensus 296 ~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~g 335 (374)
.++...||+.+|++..-+-+.|.+|...|-+.-.-|..++
T Consensus 86 ~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~Dr 125 (181)
T 2fbk_A 86 GLRPTELSALAAISGPSTSNRIVRLLEKGLIERREDERDR 125 (181)
T ss_dssp CBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC-----
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEecCCCCCC
Confidence 4999999999999999999999999999999776655444
No 442
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=21.27 E-value=88 Score=21.75 Aligned_cols=27 Identities=0% Similarity=0.000 Sum_probs=23.5
Q ss_pred cceeHHHHHhHhCCChHHHHHHHHHHh
Q psy4083 295 SRVEVGFIAKSIKLDELAVEKKLSQMI 321 (374)
Q Consensus 295 s~I~l~~lA~~l~ls~~~vE~~L~~lI 321 (374)
...+...||+.+|+|+..|...+.+.+
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~ 55 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKAL 55 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 567899999999999999998887665
No 443
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=21.23 E-value=1.1e+02 Score=24.15 Aligned_cols=29 Identities=7% Similarity=0.049 Sum_probs=24.6
Q ss_pred cccceeHHHHHhHhCCChHHHHHHHHHHh
Q psy4083 293 PYSRVEVGFIAKSIKLDELAVEKKLSQMI 321 (374)
Q Consensus 293 pYs~I~l~~lA~~l~ls~~~vE~~L~~lI 321 (374)
.+.-.+...||+.+|+|+..|...+.+..
T Consensus 121 ~~~g~s~~EIA~~lgis~~tV~~~~~ra~ 149 (164)
T 3mzy_A 121 LIRGYSYREIATILSKNLKSIDNTIQRIR 149 (164)
T ss_dssp HTTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45677999999999999999998887754
No 444
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=21.22 E-value=1.6e+02 Score=27.83 Aligned_cols=45 Identities=18% Similarity=0.220 Sum_probs=34.2
Q ss_pred ccccceeHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEE
Q psy4083 292 EPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIV 339 (374)
Q Consensus 292 ~pYs~I~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~ 339 (374)
.|| ++.+.+++.+|+|..-+.+.|.+|...|.|.- +....+.+..
T Consensus 309 ~p~--~t~~~~~~~~gvS~~Ta~r~L~~L~e~GiL~~-~~~gR~~~y~ 353 (373)
T 2qc0_A 309 QPY--CRIQNLVESGLAKRQTASVYLKQLCDIGVLEE-VQSGKEKLFV 353 (373)
T ss_dssp CSE--EEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEE-C--CCSCEEE
T ss_pred CCc--ccHHHHHHHhCCCHHHHHHHHHHHHHCCcEEE-ecCCCceEEe
Confidence 455 67778999999999999999999999998864 2334444443
No 445
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=20.87 E-value=3.1e+02 Score=21.51 Aligned_cols=99 Identities=13% Similarity=0.070 Sum_probs=64.6
Q ss_pred ChHHHhhHHHHHHHHHHHHHHHhhccccceeHHHHHhH-----hCCChHHHHHHHHHHhhcCccceeecCCC-CeEEEec
Q psy4083 268 DTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKS-----IKLDELAVEKKLSQMILDKKFHGILDQGE-KVLIVFE 341 (374)
Q Consensus 268 D~~l~~h~~~L~~~ire~~l~~~~~pYs~I~l~~lA~~-----l~ls~~~vE~~L~~lI~dgkl~akID~~~-giv~~~~ 341 (374)
|+.+......+.+....-.++.++. ....--.|.+. ++++...+-..|.+|-.+|-|...-+..+ +--..+.
T Consensus 7 ~~~~~~~~~~l~~g~l~~~IL~lL~--~p~~GYei~~~l~~~~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~~~rk~Y~ 84 (123)
T 3ri2_A 7 DDIVSSMVLELRRGTLVMLVLSQLR--EPAYGYALVKSLADHGIPIEANTLYPLMRRLESQGLLASEWDNGGSKPRKYYR 84 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT--SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEEEECSSCEEEEEE
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHc--CCCCHHHHHHHHHHhCCCCCcchHHHHHHHHHHCCCEEEEeccCCCCCceEEE
Confidence 3445555667777777777887775 33444344444 58999999999999999999988654322 2112222
Q ss_pred -CCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy4083 342 -GAEIDKTYEKALETITSMGKVIDTLYQ 368 (374)
Q Consensus 342 -~~~~~~~y~~~~~~i~~l~~~vd~l~~ 368 (374)
.+.-...+....+....+...++.+++
T Consensus 85 LT~~Gr~~l~~~~~~~~~~~~~i~~il~ 112 (123)
T 3ri2_A 85 TTDEGLRVLREVEAQWHVLCDGVGKLLE 112 (123)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 222335566666777777888887774
No 446
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=20.47 E-value=7e+02 Score=25.51 Aligned_cols=51 Identities=10% Similarity=-0.101 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHHhhccccCCChhhhHHHHHHHHHHhhcccccHHHHHHHHHHhccCcC
Q psy4083 173 NLSTSRASLTSARTTANSIYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEGFS 231 (374)
Q Consensus 173 n~~~a~~~~~~a~~~~~~~~~~~~~~~~i~~~~G~~~~~~~rdy~~A~~~F~eaf~~f~ 231 (374)
|..+++.++..+.+.-. .++.+ -...+.+.. ..++...|...|=-+.....
T Consensus 485 d~e~Ar~ife~~Lk~~p---~~~~~----w~~y~~fe~-~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 485 DTKTACKVLELGLKYFA---TDGEY----INKYLDFLI-YVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp CCHHHHHHHHHHHHHHT---TCHHH----HHHHHHHHH-HHTCHHHHHHHHHHHTTTSS
T ss_pred CHHHHHHHHHHHHHHCC---CchHH----HHHHHHHHH-hCCCHHHHHHHHHHHHHhcC
Confidence 46666666666544310 12222 122333334 45666666666665555443
No 447
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2
Probab=20.12 E-value=25 Score=31.47 Aligned_cols=63 Identities=13% Similarity=0.060 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHHHHhhccccce-eHHHHHhHhCCChHHHHHHHHHHhhcCccceeecCCCCeEEE
Q psy4083 275 IGTLYDNMLEQNLCRIIEPYSRV-EVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIV 339 (374)
Q Consensus 275 ~~~L~~~ire~~l~~~~~pYs~I-~l~~lA~~l~ls~~~vE~~L~~lI~dgkl~akID~~~giv~~ 339 (374)
...+++.++......-+.|=.++ +...||+.||+|..-|.+-|..|..+|-|..+ +..|+.+.
T Consensus 18 ~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~g~G~~V~ 81 (247)
T 2ra5_A 18 YFQLSQQLEAAIEHGALTPGSLLGNEIELAARLGLSRPTVRQAIQSLVDKGLLVRR--RGVGTQVV 81 (247)
T ss_dssp --------------------------------------------------CEEEEE--C-------
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE--cCceeEEe
Confidence 34566667766666677888899 89999999999999999999999999988643 44566554
Done!