Your job contains 1 sequence.
>psy4083
MAGAMMFERSASQISITGNSYKTGYEEENHDEEVKAKEQNILQLGEKYKQEGKAIELAEL
IKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQSL
EARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRAS
LTSARTTANSIYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEGFSTVDHNHAMM
SLKYMLLSKIMLNTPEDVNQILSELEDDTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVG
FIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFEGAEIDKTYEKALETITSMG
KVIDTLYQKAKKLT
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy4083
(374 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0028689 - symbol:Rpn6 "Regulatory particle non-ATP... 714 5.5e-113 2
UNIPROTKB|Q2KI42 - symbol:PSMD11 "26S proteasome non-ATPa... 633 3.2e-100 2
UNIPROTKB|E2RJ26 - symbol:PSMD11 "Uncharacterized protein... 633 3.2e-100 2
UNIPROTKB|O00231 - symbol:PSMD11 "26S proteasome non-ATPa... 633 3.2e-100 2
MGI|MGI:1916327 - symbol:Psmd11 "proteasome (prosome, mac... 633 3.2e-100 2
RGD|1306450 - symbol:Psmd11 "proteasome (prosome, macropa... 633 3.2e-100 2
UNIPROTKB|F1RKW8 - symbol:PSMD11 "Uncharacterized protein... 631 5.3e-100 2
UNIPROTKB|F6XBL2 - symbol:psmd11 "26S proteasome non-ATPa... 622 3.7e-99 2
ZFIN|ZDB-GENE-030131-2711 - symbol:psmd11a "proteasome (p... 625 2.6e-98 2
ZFIN|ZDB-GENE-030131-984 - symbol:psmd11b "proteasome (pr... 609 5.3e-98 2
POMBASE|SPAC23G3.11 - symbol:rpn6 "19S proteasome regulat... 462 1.1e-74 2
ASPGD|ASPL0000014128 - symbol:AN10519 species:162425 "Eme... 417 1.8e-66 2
CGD|CAL0003109 - symbol:RPN6 species:5476 "Candida albica... 355 1.8e-60 2
SGD|S000002255 - symbol:RPN6 "Essential, non-ATPase regul... 337 8.8e-59 2
TAIR|locus:2030017 - symbol:ATS9 "AT1G29150" species:3702... 326 1.6e-53 2
WB|WBGene00004462 - symbol:rpn-6.1 species:6239 "Caenorha... 514 2.5e-49 1
UNIPROTKB|Q20938 - symbol:rpn-6.1 "Probable 26S proteasom... 514 2.5e-49 1
UNIPROTKB|G4NAA5 - symbol:MGG_03211 "26S proteasome non-A... 436 4.6e-41 1
DICTYBASE|DDB_G0281315 - symbol:psmD11 "26S proteasome no... 378 6.5e-35 1
GENEDB_PFALCIPARUM|PF14_0025 - symbol:PF14_0025 "proteoso... 200 3.4e-25 3
UNIPROTKB|Q8IM66 - symbol:PF14_0025 "Proteosome subunit, ... 200 3.4e-25 3
UNIPROTKB|F1NPA2 - symbol:PSMD11 "Uncharacterized protein... 177 3.3e-13 1
UNIPROTKB|J3KSW3 - symbol:PSMD11 "26S proteasome non-ATPa... 176 4.2e-13 1
TAIR|locus:2059289 - symbol:FUS12 "FUSCA 12" species:3702... 107 3.3e-10 3
ASPGD|ASPL0000076227 - symbol:csnB species:162425 "Emeric... 121 9.0e-08 2
UNIPROTKB|E2REA8 - symbol:COPS2 "Uncharacterized protein"... 145 3.0e-07 1
UNIPROTKB|P61201 - symbol:COPS2 "COP9 signalosome complex... 145 3.0e-07 1
MGI|MGI:1330276 - symbol:Cops2 "COP9 (constitutive photom... 145 3.0e-07 1
RGD|628791 - symbol:Cops2 "COP9 signalosome subunit 2" sp... 145 3.0e-07 1
UNIPROTKB|P61203 - symbol:Cops2 "COP9 signalosome complex... 145 3.0e-07 1
UNIPROTKB|G3X736 - symbol:COPS2 "Uncharacterized protein"... 145 3.1e-07 1
FB|FBgn0013746 - symbol:alien "alien" species:7227 "Droso... 115 6.9e-07 3
ZFIN|ZDB-GENE-040625-15 - symbol:cops2 "COP9 constitutive... 138 1.8e-06 1
UNIPROTKB|G5EHS2 - symbol:MGCH7_ch7g1103 "COP9 signalosom... 96 9.4e-06 2
DICTYBASE|DDB_G0289361 - symbol:csn2 "proteasome componen... 125 5.4e-05 1
WB|WBGene00000814 - symbol:csn-2 species:6239 "Caenorhabd... 96 0.00056 2
UNIPROTKB|O01422 - symbol:csn-2 "COP9 signalosome complex... 96 0.00056 2
>FB|FBgn0028689 [details] [associations]
symbol:Rpn6 "Regulatory particle non-ATPase 6" species:7227
"Drosophila melanogaster" [GO:0008541 "proteasome regulatory
particle, lid subcomplex" evidence=ISS;NAS] [GO:0004175
"endopeptidase activity" evidence=IDA] [GO:0005838 "proteasome
regulatory particle" evidence=ISS;IDA] [GO:0006508 "proteolysis"
evidence=ISS;IDA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000717 InterPro:IPR011990 Pfam:PF01399
SMART:SM00088 EMBL:AE013599 GO:GO:0005875 GO:GO:0006508
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0004175
Gene3D:1.25.40.10 GO:GO:0008541 InterPro:IPR013143 SMART:SM00753
GeneTree:ENSGT00530000063301 KO:K03036 OMA:SGILDQG EMBL:AF145309
EMBL:AF160939 EMBL:BT089015 RefSeq:NP_001246325.1
RefSeq:NP_477474.1 RefSeq:NP_725412.2 UniGene:Dm.3085 PDB:3TXM
PDB:3TXN PDBsum:3TXM PDBsum:3TXN ProteinModelPortal:Q7KLV9
SMR:Q7KLV9 IntAct:Q7KLV9 STRING:Q7KLV9 PRIDE:Q7KLV9
EnsemblMetazoa:FBtr0087475 EnsemblMetazoa:FBtr0306558 GeneID:36638
KEGG:dme:Dmel_CG10149 UCSC:CG10149-RB CTD:36638 FlyBase:FBgn0028689
InParanoid:Q7KLV9 GenomeRNAi:36638 NextBio:799626 Bgee:Q7KLV9
Uniprot:Q7KLV9
Length = 422
Score = 714 (256.4 bits), Expect = 5.5e-113, Sum P(2) = 5.5e-113
Identities = 153/272 (56%), Positives = 176/272 (64%)
Query: 1 MAGAMMFERSASQISITGNSYKTGY-------EE--ENHDEEVKAKEQNILQLGEKYKQE 51
MAGA +FER+ + S+ + +E EN +E ++ KEQ ILQ GE YKQE
Sbjct: 1 MAGATLFERAQALSSVNREEQDSSLLNKLVRDQEGAENDEERIRIKEQGILQQGELYKQE 60
Query: 52 GKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEE 111
GKA ELA+LIK TRPFLS ISKAKAAKLVRSLVD FLD++ TG+EV LCK+CIEWAK+E
Sbjct: 61 GKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE 120
Query: 112 RRTFLRQSLEARLIALYFDTGEYTEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTYHXX 171
+RTFLRQSLEARLIALYFDT YTEA TYH
Sbjct: 121 KRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHAL 180
Query: 172 XXXXXXXXXXXXXXXXXXXIYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEGFS 231
IYCPPK+Q ALDLQSGILHAADE+DFKTAFSYFYEAFEGF
Sbjct: 181 SNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFD 240
Query: 232 TVDHNHAMMSLKYMLLSKIMLNTPEDVNQILS 263
+VD A+ SLKYMLL KIML +DVNQ++S
Sbjct: 241 SVDSVKALTSLKYMLLCKIMLGQSDDVNQLVS 272
Score = 421 (153.3 bits), Expect = 5.5e-113, Sum P(2) = 5.5e-113
Identities = 84/111 (75%), Positives = 95/111 (85%)
Query: 264 ELEDDTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILD 323
EL +D IV+AH+GTLYD MLEQNLCRIIEPYSRV+V +A+SI+L VEKKLSQMILD
Sbjct: 312 ELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHVAESIQLPMPQVEKKLSQMILD 371
Query: 324 KKFHGILDQGEKVLIVFEGAEIDKTYEKALETITSMGKVIDTLYQKAKKLT 374
KKF GILDQGE VLIVFE +DKTYE+ LETI SMGKV+DTLYQKAKKL+
Sbjct: 372 KKFSGILDQGEGVLIVFEETPVDKTYERVLETIQSMGKVVDTLYQKAKKLS 422
>UNIPROTKB|Q2KI42 [details] [associations]
symbol:PSMD11 "26S proteasome non-ATPase regulatory subunit
11" species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
complex" evidence=ISS] [GO:0048863 "stem cell differentiation"
evidence=ISS] [GO:0043248 "proteasome assembly" evidence=ISS]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=ISS] [GO:0005829 "cytosol" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000717 InterPro:IPR011990
Pfam:PF01399 SMART:SM00088 GO:GO:0005829 GO:GO:0005634
GO:GO:0048863 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:1.25.40.10 GO:GO:0043248 GO:GO:0006511 InterPro:IPR013143
SMART:SM00753 eggNOG:COG5159 GeneTree:ENSGT00530000063301
GO:GO:0022624 HOGENOM:HOG000210093 KO:K03036 OMA:SGILDQG
EMBL:BT029888 EMBL:DAAA02048509 EMBL:DAAA02048510 EMBL:BC112777
IPI:IPI00716714 RefSeq:NP_001039613.1 UniGene:Bt.2394
ProteinModelPortal:Q2KI42 SMR:Q2KI42 STRING:Q2KI42 PRIDE:Q2KI42
Ensembl:ENSBTAT00000025152 Ensembl:ENSBTAT00000054679 GeneID:513461
KEGG:bta:513461 CTD:5717 HOVERGEN:HBG053738 InParanoid:Q2KI42
OrthoDB:EOG41RPV3 NextBio:20870863 ArrayExpress:Q2KI42
Uniprot:Q2KI42
Length = 422
Score = 633 (227.9 bits), Expect = 3.2e-100, Sum P(2) = 3.2e-100
Identities = 131/256 (51%), Positives = 162/256 (63%)
Query: 8 ERSASQISITGNSYKTGYEEENHDEEVKAKEQNILQLGEKYKQEGKAIELAELIKKTRPF 67
+R AS I I + K +E N +E V+ KEQ+IL+LG + G+A EL L+K RPF
Sbjct: 19 DREAS-IDILHSIVKRDIQE-NDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKYVRPF 76
Query: 68 LSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQSLEARLIAL 127
L+ ISKAKAA+LVRSL+D FLD+E TG EV LC ECIEWAK E+RTFLRQ+LEARL++L
Sbjct: 77 LNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSEKRTFLRQALEARLVSL 136
Query: 128 YFDTGEYTEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTYHXXXXXXXXXXXXXXXXXX 187
YFDT Y EA TYH
Sbjct: 137 YFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHALSNLPKARAALTSARTT 196
Query: 188 XXXIYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEGFSTVDHNHAMMSLKYMLL 247
IYCPPK+QA LD+QSGI+HAA+E+D+KTA+SYFYEAFEG+ ++D A+ SLKYMLL
Sbjct: 197 ANAIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYDSIDSPKAITSLKYMLL 256
Query: 248 SKIMLNTPEDVNQILS 263
KIMLNTPEDV ++S
Sbjct: 257 CKIMLNTPEDVQALVS 272
Score = 381 (139.2 bits), Expect = 3.2e-100, Sum P(2) = 3.2e-100
Identities = 73/112 (65%), Positives = 90/112 (80%)
Query: 263 SELEDDTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMIL 322
+EL DD I+ H+ LYDN+LEQNL R+IEP+SRV++ I+ IKL + VE+KLSQMIL
Sbjct: 311 AELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMIL 370
Query: 323 DKKFHGILDQGEKVLIVFEGAEIDKTYEKALETITSMGKVIDTLYQKAKKLT 374
DKKFHGILDQGE VLI+F+ +DKTYE ALETI +M KV+D+LY KAKKLT
Sbjct: 371 DKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLYNKAKKLT 422
>UNIPROTKB|E2RJ26 [details] [associations]
symbol:PSMD11 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048863 "stem cell differentiation"
evidence=IEA] [GO:0043248 "proteasome assembly" evidence=IEA]
[GO:0022624 "proteasome accessory complex" evidence=IEA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] InterPro:IPR000717 InterPro:IPR011990 Pfam:PF01399
SMART:SM00088 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:1.25.40.10 InterPro:IPR013143 SMART:SM00753
GeneTree:ENSGT00530000063301 KO:K03036 OMA:SGILDQG CTD:5717
EMBL:AAEX03006642 RefSeq:XP_537730.2 ProteinModelPortal:E2RJ26
Ensembl:ENSCAFT00000029207 GeneID:480610 KEGG:cfa:480610
Uniprot:E2RJ26
Length = 422
Score = 633 (227.9 bits), Expect = 3.2e-100, Sum P(2) = 3.2e-100
Identities = 131/256 (51%), Positives = 162/256 (63%)
Query: 8 ERSASQISITGNSYKTGYEEENHDEEVKAKEQNILQLGEKYKQEGKAIELAELIKKTRPF 67
+R AS I I + K +E N +E V+ KEQ+IL+LG + G+A EL L+K RPF
Sbjct: 19 DREAS-IDILHSIVKRDIQE-NDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKYVRPF 76
Query: 68 LSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQSLEARLIAL 127
L+ ISKAKAA+LVRSL+D FLD+E TG EV LC ECIEWAK E+RTFLRQ+LEARL++L
Sbjct: 77 LNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSEKRTFLRQALEARLVSL 136
Query: 128 YFDTGEYTEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTYHXXXXXXXXXXXXXXXXXX 187
YFDT Y EA TYH
Sbjct: 137 YFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHALSNLPKARAALTSARTT 196
Query: 188 XXXIYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEGFSTVDHNHAMMSLKYMLL 247
IYCPPK+QA LD+QSGI+HAA+E+D+KTA+SYFYEAFEG+ ++D A+ SLKYMLL
Sbjct: 197 ANAIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYDSIDSPKAITSLKYMLL 256
Query: 248 SKIMLNTPEDVNQILS 263
KIMLNTPEDV ++S
Sbjct: 257 CKIMLNTPEDVQALVS 272
Score = 381 (139.2 bits), Expect = 3.2e-100, Sum P(2) = 3.2e-100
Identities = 73/112 (65%), Positives = 90/112 (80%)
Query: 263 SELEDDTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMIL 322
+EL DD I+ H+ LYDN+LEQNL R+IEP+SRV++ I+ IKL + VE+KLSQMIL
Sbjct: 311 AELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMIL 370
Query: 323 DKKFHGILDQGEKVLIVFEGAEIDKTYEKALETITSMGKVIDTLYQKAKKLT 374
DKKFHGILDQGE VLI+F+ +DKTYE ALETI +M KV+D+LY KAKKLT
Sbjct: 371 DKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLYNKAKKLT 422
>UNIPROTKB|O00231 [details] [associations]
symbol:PSMD11 "26S proteasome non-ATPase regulatory subunit
11" species:9606 "Homo sapiens" [GO:0000502 "proteasome complex"
evidence=TAS] [GO:0022624 "proteasome accessory complex"
evidence=IDA] [GO:0048863 "stem cell differentiation" evidence=IMP]
[GO:0043248 "proteasome assembly" evidence=IMP] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IMP]
[GO:0000075 "cell cycle checkpoint" evidence=TAS] [GO:0000082 "G1/S
transition of mitotic cell cycle" evidence=TAS] [GO:0000084 "S
phase of mitotic cell cycle" evidence=TAS] [GO:0000209 "protein
polyubiquitination" evidence=TAS] [GO:0000216 "M/G1 transition of
mitotic cell cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle"
evidence=TAS] [GO:0002474 "antigen processing and presentation of
peptide antigen via MHC class I" evidence=TAS] [GO:0002479 "antigen
processing and presentation of exogenous peptide antigen via MHC
class I, TAP-dependent" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0006521
"regulation of cellular amino acid metabolic process" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0006977 "DNA
damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0031145
"anaphase-promoting complex-dependent proteasomal
ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0034641 "cellular nitrogen compound metabolic process"
evidence=TAS] [GO:0042590 "antigen processing and presentation of
exogenous peptide antigen via MHC class I" evidence=TAS]
[GO:0042981 "regulation of apoptotic process" evidence=TAS]
[GO:0044281 "small molecule metabolic process" evidence=TAS]
[GO:0051436 "negative regulation of ubiquitin-protein ligase
activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
"positive regulation of ubiquitin-protein ligase activity involved
in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
ubiquitin-protein ligase activity involved in mitotic cell cycle"
evidence=TAS] Reactome:REACT_13505 Reactome:REACT_578
Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_6850
Reactome:REACT_111217 InterPro:IPR000717 InterPro:IPR011990
Pfam:PF01399 SMART:SM00088 GO:GO:0005829 Reactome:REACT_111102
Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0006915
GO:GO:0010467 GO:GO:0016071 Reactome:REACT_115566 GO:GO:0005654
GO:GO:0002479 GO:GO:0016032 Reactome:REACT_21300 GO:GO:0006977
GO:GO:0042981 GO:GO:0044281 GO:GO:0000082 GO:GO:0048863
Gene3D:1.10.10.10 InterPro:IPR011991 Gene3D:1.25.40.10
GO:GO:0051436 GO:GO:0043248 GO:GO:0000216 GO:GO:0000209
GO:GO:0000084 GO:GO:0031145 GO:GO:0051437 EMBL:CH471147
GO:GO:0006521 Reactome:REACT_383 InterPro:IPR013143 SMART:SM00753
eggNOG:COG5159 GO:GO:0022624 KO:K03036 OMA:SGILDQG CTD:5717
HOVERGEN:HBG053738 OrthoDB:EOG41RPV3 EMBL:AF001212 EMBL:AB003102
EMBL:AK290602 EMBL:AK223196 EMBL:BC000437 EMBL:BC004430
IPI:IPI00105598 PIR:JC6524 RefSeq:NP_001257411.1 RefSeq:NP_002806.2
UniGene:Hs.443379 ProteinModelPortal:O00231 SMR:O00231
IntAct:O00231 MINT:MINT-1154929 STRING:O00231 PhosphoSite:O00231
OGP:O00231 PaxDb:O00231 PRIDE:O00231 Ensembl:ENST00000261712
Ensembl:ENST00000457654 GeneID:5717 KEGG:hsa:5717 UCSC:uc002hhm.3
GeneCards:GC17P030771 HGNC:HGNC:9556 HPA:HPA042275 MIM:604449
neXtProt:NX_O00231 PharmGKB:PA33902 InParanoid:O00231
PhylomeDB:O00231 GenomeRNAi:5717 NextBio:22212 ArrayExpress:O00231
Bgee:O00231 CleanEx:HS_PSMD11 Genevestigator:O00231
GermOnline:ENSG00000108671 Uniprot:O00231
Length = 422
Score = 633 (227.9 bits), Expect = 3.2e-100, Sum P(2) = 3.2e-100
Identities = 131/256 (51%), Positives = 162/256 (63%)
Query: 8 ERSASQISITGNSYKTGYEEENHDEEVKAKEQNILQLGEKYKQEGKAIELAELIKKTRPF 67
+R AS I I + K +E N +E V+ KEQ+IL+LG + G+A EL L+K RPF
Sbjct: 19 DREAS-IDILHSIVKRDIQE-NDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKYVRPF 76
Query: 68 LSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQSLEARLIAL 127
L+ ISKAKAA+LVRSL+D FLD+E TG EV LC ECIEWAK E+RTFLRQ+LEARL++L
Sbjct: 77 LNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSEKRTFLRQALEARLVSL 136
Query: 128 YFDTGEYTEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTYHXXXXXXXXXXXXXXXXXX 187
YFDT Y EA TYH
Sbjct: 137 YFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHALSNLPKARAALTSARTT 196
Query: 188 XXXIYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEGFSTVDHNHAMMSLKYMLL 247
IYCPPK+QA LD+QSGI+HAA+E+D+KTA+SYFYEAFEG+ ++D A+ SLKYMLL
Sbjct: 197 ANAIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYDSIDSPKAITSLKYMLL 256
Query: 248 SKIMLNTPEDVNQILS 263
KIMLNTPEDV ++S
Sbjct: 257 CKIMLNTPEDVQALVS 272
Score = 381 (139.2 bits), Expect = 3.2e-100, Sum P(2) = 3.2e-100
Identities = 73/112 (65%), Positives = 90/112 (80%)
Query: 263 SELEDDTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMIL 322
+EL DD I+ H+ LYDN+LEQNL R+IEP+SRV++ I+ IKL + VE+KLSQMIL
Sbjct: 311 AELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMIL 370
Query: 323 DKKFHGILDQGEKVLIVFEGAEIDKTYEKALETITSMGKVIDTLYQKAKKLT 374
DKKFHGILDQGE VLI+F+ +DKTYE ALETI +M KV+D+LY KAKKLT
Sbjct: 371 DKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLYNKAKKLT 422
>MGI|MGI:1916327 [details] [associations]
symbol:Psmd11 "proteasome (prosome, macropain) 26S subunit,
non-ATPase, 11" species:10090 "Mus musculus" [GO:0000502
"proteasome complex" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=ISO] [GO:0022624 "proteasome accessory complex"
evidence=ISO;IDA] [GO:0043248 "proteasome assembly" evidence=ISO]
[GO:0048863 "stem cell differentiation" evidence=ISO]
InterPro:IPR000717 InterPro:IPR011990 Pfam:PF01399 SMART:SM00088
MGI:MGI:1916327 GO:GO:0048863 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:1.25.40.10 GO:GO:0043248 GO:GO:0006511 InterPro:IPR013143
SMART:SM00753 eggNOG:COG5159 GeneTree:ENSGT00530000063301
GO:GO:0022624 HOGENOM:HOG000210093 KO:K03036 OMA:SGILDQG CTD:5717
HOVERGEN:HBG053738 OrthoDB:EOG41RPV3 EMBL:AK051738 EMBL:AK089942
IPI:IPI00222515 RefSeq:NP_848731.2 UniGene:Mm.260539
ProteinModelPortal:Q8BG32 SMR:Q8BG32 IntAct:Q8BG32 STRING:Q8BG32
PhosphoSite:Q8BG32 PaxDb:Q8BG32 PRIDE:Q8BG32
Ensembl:ENSMUST00000017572 Ensembl:ENSMUST00000173938 GeneID:69077
KEGG:mmu:69077 InParanoid:Q8BG32 NextBio:328550 Bgee:Q8BG32
Genevestigator:Q8BG32 GermOnline:ENSMUSG00000017428 Uniprot:Q8BG32
Length = 422
Score = 633 (227.9 bits), Expect = 3.2e-100, Sum P(2) = 3.2e-100
Identities = 131/256 (51%), Positives = 162/256 (63%)
Query: 8 ERSASQISITGNSYKTGYEEENHDEEVKAKEQNILQLGEKYKQEGKAIELAELIKKTRPF 67
+R AS I I + K +E N +E V+ KEQ+IL+LG + G+A EL L+K RPF
Sbjct: 19 DREAS-IDILHSIVKRDIQE-NDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKYVRPF 76
Query: 68 LSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQSLEARLIAL 127
L+ ISKAKAA+LVRSL+D FLD+E TG EV LC ECIEWAK E+RTFLRQ+LEARL++L
Sbjct: 77 LNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSEKRTFLRQALEARLVSL 136
Query: 128 YFDTGEYTEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTYHXXXXXXXXXXXXXXXXXX 187
YFDT Y EA TYH
Sbjct: 137 YFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHALSNLPKARAALTSARTT 196
Query: 188 XXXIYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEGFSTVDHNHAMMSLKYMLL 247
IYCPPK+QA LD+QSGI+HAA+E+D+KTA+SYFYEAFEG+ ++D A+ SLKYMLL
Sbjct: 197 ANAIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYDSIDSPKAITSLKYMLL 256
Query: 248 SKIMLNTPEDVNQILS 263
KIMLNTPEDV ++S
Sbjct: 257 CKIMLNTPEDVQALVS 272
Score = 381 (139.2 bits), Expect = 3.2e-100, Sum P(2) = 3.2e-100
Identities = 73/112 (65%), Positives = 90/112 (80%)
Query: 263 SELEDDTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMIL 322
+EL DD I+ H+ LYDN+LEQNL R+IEP+SRV++ I+ IKL + VE+KLSQMIL
Sbjct: 311 AELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMIL 370
Query: 323 DKKFHGILDQGEKVLIVFEGAEIDKTYEKALETITSMGKVIDTLYQKAKKLT 374
DKKFHGILDQGE VLI+F+ +DKTYE ALETI +M KV+D+LY KAKKLT
Sbjct: 371 DKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLYSKAKKLT 422
>RGD|1306450 [details] [associations]
symbol:Psmd11 "proteasome (prosome, macropain) 26S subunit,
non-ATPase, 11" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=ISO;ISS] [GO:0022624 "proteasome accessory complex"
evidence=ISO;ISS] [GO:0043248 "proteasome assembly"
evidence=ISO;ISS] [GO:0048863 "stem cell differentiation"
evidence=ISO;ISS] InterPro:IPR000717 InterPro:IPR011990
Pfam:PF01399 SMART:SM00088 RGD:1306450 GO:GO:0005829 GO:GO:0005634
GO:GO:0048863 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:1.25.40.10 GO:GO:0043248 GO:GO:0006511 InterPro:IPR013143
SMART:SM00753 GO:GO:0022624 OMA:SGILDQG IPI:IPI00765842
ProteinModelPortal:F1LMZ8 PRIDE:F1LMZ8 ArrayExpress:F1LMZ8
Uniprot:F1LMZ8
Length = 422
Score = 633 (227.9 bits), Expect = 3.2e-100, Sum P(2) = 3.2e-100
Identities = 131/256 (51%), Positives = 162/256 (63%)
Query: 8 ERSASQISITGNSYKTGYEEENHDEEVKAKEQNILQLGEKYKQEGKAIELAELIKKTRPF 67
+R AS I I + K +E N +E V+ KEQ+IL+LG + G+A EL L+K RPF
Sbjct: 19 DREAS-IDILHSIVKRDIQE-NDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKYVRPF 76
Query: 68 LSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQSLEARLIAL 127
L+ ISKAKAA+LVRSL+D FLD+E TG EV LC ECIEWAK E+RTFLRQ+LEARL++L
Sbjct: 77 LNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSEKRTFLRQALEARLVSL 136
Query: 128 YFDTGEYTEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTYHXXXXXXXXXXXXXXXXXX 187
YFDT Y EA TYH
Sbjct: 137 YFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHALSNLPKARAALTSARTT 196
Query: 188 XXXIYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEGFSTVDHNHAMMSLKYMLL 247
IYCPPK+QA LD+QSGI+HAA+E+D+KTA+SYFYEAFEG+ ++D A+ SLKYMLL
Sbjct: 197 ANAIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYDSIDSPKAITSLKYMLL 256
Query: 248 SKIMLNTPEDVNQILS 263
KIMLNTPEDV ++S
Sbjct: 257 CKIMLNTPEDVQALVS 272
Score = 381 (139.2 bits), Expect = 3.2e-100, Sum P(2) = 3.2e-100
Identities = 73/112 (65%), Positives = 90/112 (80%)
Query: 263 SELEDDTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMIL 322
+EL DD I+ H+ LYDN+LEQNL R+IEP+SRV++ I+ IKL + VE+KLSQMIL
Sbjct: 311 AELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMIL 370
Query: 323 DKKFHGILDQGEKVLIVFEGAEIDKTYEKALETITSMGKVIDTLYQKAKKLT 374
DKKFHGILDQGE VLI+F+ +DKTYE ALETI +M KV+D+LY KAKKLT
Sbjct: 371 DKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLYNKAKKLT 422
>UNIPROTKB|F1RKW8 [details] [associations]
symbol:PSMD11 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048863 "stem cell differentiation" evidence=IEA]
[GO:0043248 "proteasome assembly" evidence=IEA] [GO:0022624
"proteasome accessory complex" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
InterPro:IPR000717 InterPro:IPR011990 Pfam:PF01399 SMART:SM00088
Gene3D:1.10.10.10 InterPro:IPR011991 Gene3D:1.25.40.10
InterPro:IPR013143 SMART:SM00753 GeneTree:ENSGT00530000063301
OMA:SGILDQG EMBL:CU463935 EMBL:CU695029 Ensembl:ENSSSCT00000019298
Uniprot:F1RKW8
Length = 392
Score = 631 (227.2 bits), Expect = 5.3e-100, Sum P(2) = 5.3e-100
Identities = 125/237 (52%), Positives = 154/237 (64%)
Query: 27 EENHDEEVKAKEQNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDF 86
+EN +E V+ KEQ+IL+LG + G+A EL L+K RPFL+ ISKAKAA+LVRSL+D
Sbjct: 6 QENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDL 65
Query: 87 FLDLETRTGMEVALCKECIEWAKEERRTFLRQSLEARLIALYFDTGEYTEAXXXXXXXXX 146
FLD+E TG EV LC ECIEWAK E+RTFLRQ+LEARL++LYFDT Y EA
Sbjct: 66 FLDMEAATGQEVELCLECIEWAKSEKRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLR 125
Query: 147 XXXXXXXXXXXXXXXXXXXXTYHXXXXXXXXXXXXXXXXXXXXXIYCPPKMQAALDLQSG 206
TYH IYCPPK+QA LD+QSG
Sbjct: 126 ELKKMDDKALLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKLQATLDMQSG 185
Query: 207 ILHAADEQDFKTAFSYFYEAFEGFSTVDHNHAMMSLKYMLLSKIMLNTPEDVNQILS 263
I+HAA+E+D+KTA+SYFYEAFEG+ ++D A+ SLKYMLL KIMLNTPEDV ++S
Sbjct: 186 IIHAAEEKDWKTAYSYFYEAFEGYDSIDSPKAITSLKYMLLCKIMLNTPEDVQALVS 242
Score = 381 (139.2 bits), Expect = 5.3e-100, Sum P(2) = 5.3e-100
Identities = 73/112 (65%), Positives = 90/112 (80%)
Query: 263 SELEDDTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMIL 322
+EL DD I+ H+ LYDN+LEQNL R+IEP+SRV++ I+ IKL + VE+KLSQMIL
Sbjct: 281 AELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMIL 340
Query: 323 DKKFHGILDQGEKVLIVFEGAEIDKTYEKALETITSMGKVIDTLYQKAKKLT 374
DKKFHGILDQGE VLI+F+ +DKTYE ALETI +M KV+D+LY KAKKLT
Sbjct: 341 DKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLYNKAKKLT 392
Score = 47 (21.6 bits), Expect = 1.7e-38, Sum P(2) = 1.7e-38
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 25 YEEENHDEEVKAKEQNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAA 77
++ + + E + Q + +L +K + +E+ L KT LS + KA+AA
Sbjct: 108 FDTKRYQEALHLGSQLLREL-KKMDDKALLVEVQLLESKTYHALSNLPKARAA 159
>UNIPROTKB|F6XBL2 [details] [associations]
symbol:psmd11 "26S proteasome non-ATPase regulatory subunit
11" species:8364 "Xenopus (Silurana) tropicalis" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISS]
[GO:0022624 "proteasome accessory complex" evidence=ISS]
[GO:0043248 "proteasome assembly" evidence=ISS] [GO:0048863 "stem
cell differentiation" evidence=ISS] InterPro:IPR000717
InterPro:IPR011990 Pfam:PF01399 SMART:SM00088 GO:GO:0005829
GO:GO:0005634 GO:GO:0048863 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:1.25.40.10 GO:GO:0043248 GO:GO:0006511 InterPro:IPR013143
SMART:SM00753 GO:GO:0022624 KO:K03036 EMBL:AAMC01047365
RefSeq:XP_002935612.1 GeneID:100492225 KEGG:xtr:100492225
Xenbase:XB-GENE-922608 Bgee:F6XBL2 Uniprot:F6XBL2
Length = 422
Score = 622 (224.0 bits), Expect = 3.7e-99, Sum P(2) = 3.7e-99
Identities = 129/262 (49%), Positives = 163/262 (62%)
Query: 2 AGAMMFERSASQISITGNSYKTGYEEENHDEEVKAKEQNILQLGEKYKQEGKAIELAELI 61
A M+ A+ I I + K +E + +E ++ KEQ+IL+LG + G+A EL L+
Sbjct: 12 AQEMLVSDRAASIDILQSIVKRDIQESD-EEALRVKEQSILELGGLLAKTGQAAELGGLL 70
Query: 62 KKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQSLE 121
K RPFL+ ISKAKAA+LVRSL+D FLD+E TG EV LC ECIEWAK E+RTFLRQ+LE
Sbjct: 71 KYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKAEKRTFLRQALE 130
Query: 122 ARLIALYFDTGEYTEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTYHXXXXXXXXXXXX 181
ARL++LYFDT Y EA TYH
Sbjct: 131 ARLVSLYFDTKRYQEALQLGSQLLRELKKMDDKALLVEVQLLESKTYHALSNLPKARAAL 190
Query: 182 XXXXXXXXXIYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEGFSTVDHNHAMMS 241
IYCPPK+QAALD+QSGI+HAA+E+D+KTA+SYFYEAFEG ++D A+ +
Sbjct: 191 TSARTTANAIYCPPKLQAALDMQSGIIHAAEEKDWKTAYSYFYEAFEGNDSIDSPKAITA 250
Query: 242 LKYMLLSKIMLNTPEDVNQILS 263
LKYMLL KIMLNTPEDV ++S
Sbjct: 251 LKYMLLCKIMLNTPEDVQALVS 272
Score = 382 (139.5 bits), Expect = 3.7e-99, Sum P(2) = 3.7e-99
Identities = 74/127 (58%), Positives = 96/127 (75%)
Query: 248 SKIMLNTPEDVNQILSELEDDTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIK 307
++ + N + + +EL DD I+ H+ LYDN+LEQNL R+IEP+SRV++ I+ IK
Sbjct: 296 NRSLANFEKALTDYKAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIDHISSLIK 355
Query: 308 LDELAVEKKLSQMILDKKFHGILDQGEKVLIVFEGAEIDKTYEKALETITSMGKVIDTLY 367
L + VE+KLSQMILDKKFHGILDQGE VLI+F+ +DKTYE ALETI +M KV+D+LY
Sbjct: 356 LPKPEVERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLY 415
Query: 368 QKAKKLT 374
KAKKLT
Sbjct: 416 NKAKKLT 422
>ZFIN|ZDB-GENE-030131-2711 [details] [associations]
symbol:psmd11a "proteasome (prosome, macropain)
216S subunit, non-ATPase, 11a" species:7955 "Danio rerio"
[GO:0003674 "molecular_function" evidence=ND] [GO:0022624
"proteasome accessory complex" evidence=ISS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISS]
[GO:0048863 "stem cell differentiation" evidence=ISS] [GO:0043248
"proteasome assembly" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0000502 "proteasome complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000717 InterPro:IPR011990 Pfam:PF01399
SMART:SM00088 ZFIN:ZDB-GENE-030131-2711 GO:GO:0005829 GO:GO:0005634
GO:GO:0048863 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:1.25.40.10 GO:GO:0043248 GO:GO:0006511 InterPro:IPR013143
SMART:SM00753 GeneTree:ENSGT00530000063301 GO:GO:0022624 KO:K03036
EMBL:BC124767 EMBL:BX890565 IPI:IPI00613161 RefSeq:NP_001159710.1
UniGene:Dr.76962 PRIDE:F6P3G4 Ensembl:ENSDART00000084448
GeneID:503934 KEGG:dre:503934 CTD:503934 NextBio:20866384
ArrayExpress:F6P3G4 Bgee:F6P3G4 Uniprot:F6P3G4
Length = 421
Score = 625 (225.1 bits), Expect = 2.6e-98, Sum P(2) = 2.6e-98
Identities = 128/256 (50%), Positives = 164/256 (64%)
Query: 8 ERSASQISITGNSYKTGYEEENHDEEVKAKEQNILQLGEKYKQEGKAIELAELIKKTRPF 67
+R+AS I I K ++++ +E V+ KEQ+IL+LG + G+A EL L+K RPF
Sbjct: 18 DRNAS-IDILHAIVKRDVQDDD-EEAVRVKEQSILELGGLLAKTGQAAELGGLLKYVRPF 75
Query: 68 LSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQSLEARLIAL 127
L+ ISKAKAA+LVRSL+D FLD+E TG EV LC ECIEWAK E+RTFLRQ+LEARL++L
Sbjct: 76 LNSISKAKAARLVRSLLDMFLDMEAATGQEVELCLECIEWAKSEKRTFLRQALEARLVSL 135
Query: 128 YFDTGEYTEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTYHXXXXXXXXXXXXXXXXXX 187
YFDT Y EA TYH
Sbjct: 136 YFDTKRYQEALQLGSQLLQELKKMDDKALLVELQLLESKTYHALSNLPKARAALTSARTT 195
Query: 188 XXXIYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEGFSTVDHNHAMMSLKYMLL 247
IYCPPK+QAALD+QSGI+HAA+E+D+KTA+SYFYEAFEG+ ++D A+ +LKYMLL
Sbjct: 196 ANAIYCPPKLQAALDMQSGIIHAAEEKDWKTAYSYFYEAFEGYDSIDSPRAITALKYMLL 255
Query: 248 SKIMLNTPEDVNQILS 263
KIMLN+PEDV ++S
Sbjct: 256 CKIMLNSPEDVQSLIS 271
Score = 371 (135.7 bits), Expect = 2.6e-98, Sum P(2) = 2.6e-98
Identities = 72/112 (64%), Positives = 91/112 (81%)
Query: 263 SELEDDTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMIL 322
+EL DD I+ H+ LYDN+LEQNL R+IEP+SRV++ I++ IKL + VE+KLSQMIL
Sbjct: 310 AELRDDPIISTHLTKLYDNLLEQNLIRVIEPFSRVQIEHISELIKLSKGDVERKLSQMIL 369
Query: 323 DKKFHGILDQGEKVLIVFEGAEIDKTYEKALETITSMGKVIDTLYQKAKKLT 374
D+KFHGILDQGE VLIVF+ +DKTYE +LETI +M KV+D+LY KAKKLT
Sbjct: 370 DQKFHGILDQGEGVLIVFDEPPVDKTYEASLETIQNMSKVVDSLYNKAKKLT 421
>ZFIN|ZDB-GENE-030131-984 [details] [associations]
symbol:psmd11b "proteasome (prosome, macropain)
216S subunit, non-ATPase, 11b" species:7955 "Danio rerio"
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=ISS] [GO:0043248 "proteasome assembly" evidence=ISS]
[GO:0022624 "proteasome accessory complex" evidence=ISS]
[GO:0048863 "stem cell differentiation" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] InterPro:IPR000717 InterPro:IPR011990
Pfam:PF01399 SMART:SM00088 ZFIN:ZDB-GENE-030131-984 GO:GO:0005829
GO:GO:0005634 GO:GO:0048863 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:1.25.40.10 GO:GO:0043248 GO:GO:0006511 InterPro:IPR013143
SMART:SM00753 GeneTree:ENSGT00530000063301 GO:GO:0022624 KO:K03036
EMBL:CR391936 EMBL:BC051618 EMBL:BC063978 IPI:IPI00507762
RefSeq:NP_955886.1 UniGene:Dr.30259 Ensembl:ENSDART00000016283
GeneID:322265 KEGG:dre:322265 CTD:322265 NextBio:20807740
ArrayExpress:F1QGH9 Bgee:F1QGH9 Uniprot:F1QGH9
Length = 422
Score = 609 (219.4 bits), Expect = 5.3e-98, Sum P(2) = 5.3e-98
Identities = 126/256 (49%), Positives = 163/256 (63%)
Query: 8 ERSASQISITGNSYKTGYEEENHDEEVKAKEQNILQLGEKYKQEGKAIELAELIKKTRPF 67
+R+AS I I + + +E++ +E V+ KEQ+IL+LG + G+A EL L+K RPF
Sbjct: 19 DRNAS-IDIFHSIVRRDVQEDD-EEAVRVKEQSILELGSLLAKTGQAAELGGLLKFVRPF 76
Query: 68 LSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQSLEARLIAL 127
L ISKAKAA+LVRSL+D FLD+E TG EV LC ECIEWAK E+RTFLRQ+LEARLI+L
Sbjct: 77 LISISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKAEKRTFLRQALEARLISL 136
Query: 128 YFDTGEYTEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTYHXXXXXXXXXXXXXXXXXX 187
YFDT Y EA TYH
Sbjct: 137 YFDTKRYQEALQLESQLLQELKKMDDKALLVEVQLLESKTYHALSNLPKARAALTSARTT 196
Query: 188 XXXIYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEGFSTVDHNHAMMSLKYMLL 247
IYCPPK+QAALD+QSGI+HAA+E+D+KTA+SYF+EAFEG+ ++D A+ +LKYMLL
Sbjct: 197 ANAIYCPPKLQAALDMQSGIIHAAEEKDWKTAYSYFFEAFEGYDSIDSPRAVTALKYMLL 256
Query: 248 SKIMLNTPEDVNQILS 263
KIML+ PE+V ++S
Sbjct: 257 CKIMLSLPEEVQALIS 272
Score = 384 (140.2 bits), Expect = 5.3e-98, Sum P(2) = 5.3e-98
Identities = 75/117 (64%), Positives = 91/117 (77%)
Query: 258 VNQILSELEDDTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKL 317
+ + EL DD I+ H+ LYDN+LEQNL R+IEP+SRV++ IA IKL + VE+KL
Sbjct: 306 LTEYTKELRDDPIINTHLAKLYDNLLEQNLIRVIEPFSRVQITHIAGLIKLSKNDVERKL 365
Query: 318 SQMILDKKFHGILDQGEKVLIVFEGAEIDKTYEKALETITSMGKVIDTLYQKAKKLT 374
SQMILDKKFHGILDQGE VLI+FE +DKTYE ALETI +M KV+D+LY KAKKLT
Sbjct: 366 SQMILDKKFHGILDQGEDVLIIFEEPPVDKTYEAALETIQNMSKVVDSLYNKAKKLT 422
>POMBASE|SPAC23G3.11 [details] [associations]
symbol:rpn6 "19S proteasome regulatory subunit Rpn6
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISO]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IC]
[GO:0008540 "proteasome regulatory particle, base subcomplex"
evidence=ISO] InterPro:IPR000717 InterPro:IPR011990 Pfam:PF01399
SMART:SM00088 PomBase:SPAC23G3.11 GO:GO:0005829 GO:GO:0005634
GO:GO:0007346 EMBL:CU329670 GenomeReviews:CU329670_GR
Gene3D:1.10.10.10 InterPro:IPR011991 Gene3D:1.25.40.10
GO:GO:0006511 InterPro:IPR013143 SMART:SM00753 eggNOG:COG5159
GO:GO:0008540 HOGENOM:HOG000210093 KO:K03036 OMA:SGILDQG PIR:T50185
RefSeq:NP_593111.1 ProteinModelPortal:Q9P7S2 IntAct:Q9P7S2
STRING:Q9P7S2 PRIDE:Q9P7S2 EnsemblFungi:SPAC23G3.11.1
GeneID:2541807 KEGG:spo:SPAC23G3.11 OrthoDB:EOG4K3Q51
NextBio:20802895 Uniprot:Q9P7S2
Length = 421
Score = 462 (167.7 bits), Expect = 1.1e-74, Sum P(2) = 1.1e-74
Identities = 93/235 (39%), Positives = 140/235 (59%)
Query: 31 DEEV-KAKEQNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLD 89
DE+V +EQ + L + Y +E + +LA+L++++RP ++ SKAK+AK+VR+L+D F
Sbjct: 37 DEKVANEQEQALTNLSDLYVRENRHNDLAQLVQQSRPLMANFSKAKSAKIVRTLIDKFSG 96
Query: 90 LETRTGMEVALCKECIEWAKEERRTFLRQSLEARLIALYFDTGEYTEAXXXXXXXXXXXX 149
+ +++ + +CI+WA +E+RTFLRQ+LE +LI+LY+D YT+A
Sbjct: 97 EKKSLPLQIEVANDCIKWAIKEKRTFLRQALETKLISLYYDNSSYTDAINLINTLLSELK 156
Query: 150 XXXXXXXXXXXXXXXXXTYHXXXXXXXXXXXXXXXXXXXXXIYCPPKMQAALDLQSGILH 209
YH +YCPP +Q LDLQSGILH
Sbjct: 157 RMDDKMLLTEVHLLESKVYHAIRNIPKARASLTAAKTSANAVYCPPMLQGNLDLQSGILH 216
Query: 210 AADEQDFKTAFSYFYEAFEGFSTVDHNH-AMMSLKYMLLSKIMLNTPEDVNQILS 263
A D+ DFKTA+SYFYEA+EGF+++D + A+ SLKYMLLS+IMLN+ +V +L+
Sbjct: 217 A-DDMDFKTAYSYFYEAYEGFTSLDDDKKALSSLKYMLLSQIMLNSVSEVKSLLT 270
Score = 310 (114.2 bits), Expect = 1.1e-74, Sum P(2) = 1.1e-74
Identities = 64/111 (57%), Positives = 82/111 (73%)
Query: 264 ELEDDTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILD 323
EL D I+++H+ +LYDN+LEQNL R++EP+SRVEV IA+ I L + VE KLSQMILD
Sbjct: 310 ELASDPIIRSHLSSLYDNLLEQNLLRVVEPFSRVEVSHIAELIGLSTVQVEGKLSQMILD 369
Query: 324 KKFHGILDQGEKVLIVFEGAEIDKTYEKALETITSMGKVIDTLYQ-KAKKL 373
K F+GILDQG LIV++ + DKTYE ALE I +MG V+D L + KA L
Sbjct: 370 KIFYGILDQGSGCLIVYDEPQQDKTYEAALEVIKNMGTVVDLLIENKASAL 420
>ASPGD|ASPL0000014128 [details] [associations]
symbol:AN10519 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR000717
InterPro:IPR011990 Pfam:PF01399 SMART:SM00088 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:BN001302 Gene3D:1.25.40.10 GO:GO:0000502
InterPro:IPR013143 SMART:SM00753 HOGENOM:HOG000210093 OMA:SGILDQG
EnsemblFungi:CADANIAT00004435 Uniprot:C8V4A5
Length = 424
Score = 417 (151.9 bits), Expect = 1.8e-66, Sum P(2) = 1.8e-66
Identities = 88/226 (38%), Positives = 122/226 (53%)
Query: 38 EQNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGME 97
E ++ LGE Y+ E K E+AELIK +R S +KAK AKLVR L+D F ++ ++
Sbjct: 48 ENALVGLGELYRDEKKPQEIAELIKTSRDSFSSFAKAKTAKLVRQLLDLFSEIPNTLDIQ 107
Query: 98 VALCKECIEWAKEERRTFLRQSLEARLIALYFDTGEYTEAXXXXXXXXXXXXXXXXXXXX 157
+A+ + CIEWA ERR+FLRQ+LE RL+A++ Y +A
Sbjct: 108 IAVIRSCIEWAVAERRSFLRQNLETRLVAIFMQKQSYYDALNLINSLLRELKRLDDKLML 167
Query: 158 XXXXXXXXXTYHXXXXXXXXXXXXXXXXXXXXXIYCPPKMQAALDLQSGILHAADEQDFK 217
YH +Y PP +QA LD+QSG+LHA D+ DF
Sbjct: 168 VEVQLLESRVYHALGNQAKARAALTAARTSAASVYTPPNLQAGLDMQSGMLHAEDK-DFN 226
Query: 218 TAFSYFYEAFEGFSTVDHNH-AMMSLKYMLLSKIMLNTPEDVNQIL 262
T++SYF EA EG+S++D A +L+YMLL KIMLN +DV +L
Sbjct: 227 TSYSYFIEALEGYSSLDEGEKATAALQYMLLCKIMLNLVDDVTTLL 272
Score = 277 (102.6 bits), Expect = 1.8e-66, Sum P(2) = 1.8e-66
Identities = 57/111 (51%), Positives = 77/111 (69%)
Query: 264 ELEDDTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILD 323
EL D ++ H+ LYD MLEQNL ++IEP+SRVE+ IAK + LD VE+KLSQMILD
Sbjct: 313 ELGSDAFIRNHLRRLYDAMLEQNLIKVIEPFSRVELDHIAKMVGLDTQQVERKLSQMILD 372
Query: 324 KKFHGILDQGEKVLIVFEGAEIDKTYEKALETITSMGKVIDTLY-QKAKKL 373
K G+LDQG LIV++ E D+ Y+ ALETI + V+++LY +A +L
Sbjct: 373 KVIIGVLDQGAGCLIVYDETERDQAYDAALETIARLSNVVESLYTNQASQL 423
>CGD|CAL0003109 [details] [associations]
symbol:RPN6 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0008541 "proteasome regulatory
particle, lid subcomplex" evidence=IEA] [GO:0034515 "proteasome
storage granule" evidence=IEA] [GO:0005198 "structural molecule
activity" evidence=IEA] [GO:0043248 "proteasome assembly"
evidence=IEA] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=IEA] InterPro:IPR000717 InterPro:IPR011990
Pfam:PF01399 SMART:SM00088 CGD:CAL0003109 Gene3D:1.10.10.10
InterPro:IPR011991 Gene3D:1.25.40.10 InterPro:IPR013143
SMART:SM00753 EMBL:AACQ01000138 KO:K03036 RefSeq:XP_709940.1
ProteinModelPortal:Q59TR9 STRING:Q59TR9 GeneID:3645352
KEGG:cal:CaO19.1299 Uniprot:Q59TR9
Length = 435
Score = 355 (130.0 bits), Expect = 1.8e-60, Sum P(2) = 1.8e-60
Identities = 81/236 (34%), Positives = 127/236 (53%)
Query: 32 EEVKAKEQNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDL- 90
++++ +E IL+LG+ Y+ + +L++LI +R L +K+K AK+V++L++ F L
Sbjct: 51 KQLQQQESAILELGKIYETLNEPTKLSDLIADSRSILGNFAKSKTAKIVKTLIEDFDKLS 110
Query: 91 ---ETRTGMEVALCKECIEWAKEERRTFLRQSLEARLIALYFDTGEYTEAXXXXXXXXXX 147
E +++ + K ++WA E + +FLRQSL+ +L L + + EA
Sbjct: 111 AKDEKSLDIQIDVTKSSMQWAIESKLSFLRQSLQLKLSDLLYQKKHHHEAIKIINELLRE 170
Query: 148 XXXXXXXXXXXXXXXXXXXTYHXXXXXXXXXXXXXXXXXXXXXIYCPPKMQAALDLQSGI 207
YH IYCP +QA LD QSGI
Sbjct: 171 YKKLDDKSSLVEVQLLESKIYHALRNIPKAKAALTSARTSANSIYCPTILQAELDCQSGI 230
Query: 208 LHAADEQDFKTAFSYFYEAFEGFSTVDHNHAMMSLKYMLLSKIMLNTPEDVNQILS 263
L++ D+ D+KTAFSYFYE+FEGF++ D +++ LKYMLL+KIMLN +DVN IL+
Sbjct: 231 LNSEDK-DYKTAFSYFYESFEGFNSQDDPRSIIVLKYMLLTKIMLNLIDDVNNILN 285
Score = 282 (104.3 bits), Expect = 1.8e-60, Sum P(2) = 1.8e-60
Identities = 60/136 (44%), Positives = 84/136 (61%)
Query: 238 AMMSLKYMLLSKIMLNTPEDVNQILSELEDDTIVKAHIGTLYDNMLEQNLCRIIEPYSRV 297
AM S+ ++ + + +EL+ D I+K H LYDN+LEQNL +IIE YS V
Sbjct: 299 AMKSIAMAYSNRSLKEFENSLLTYANELKSDAIIKNHFNALYDNLLEQNLLKIIESYSCV 358
Query: 298 EVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFEGAEIDKTYEKALETIT 357
E+ I+K I L+ VE KLSQMILDK F+G+LDQG LI+++ D YE +LE +
Sbjct: 359 ELSHISKVIGLNLQQVEGKLSQMILDKVFYGVLDQGNGWLIIYDEPRKDAAYEASLELVK 418
Query: 358 SMGKVIDTLYQKAKKL 373
++ V+D LY+KA L
Sbjct: 419 NLSNVVDLLYEKASSL 434
Score = 57 (25.1 bits), Expect = 8.8e-29, Sum P(2) = 8.8e-29
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 25 YEEENHDEEVKAKEQNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAA 77
Y++++H E +K + +L+ +K + +E+ L K L I KAKAA
Sbjct: 152 YQKKHHHEAIKIINE-LLREYKKLDDKSSLVEVQLLESKIYHALRNIPKAKAA 203
>SGD|S000002255 [details] [associations]
symbol:RPN6 "Essential, non-ATPase regulatory subunit of the
26S proteasome lid" species:4932 "Saccharomyces cerevisiae"
[GO:0005198 "structural molecule activity" evidence=IMP]
[GO:0000502 "proteasome complex" evidence=IEA] [GO:0043248
"proteasome assembly" evidence=IMP] [GO:0008541 "proteasome
regulatory particle, lid subcomplex" evidence=IDA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IMP]
[GO:0034515 "proteasome storage granule" evidence=IDA]
InterPro:IPR000717 InterPro:IPR011990 Pfam:PF01399 SMART:SM00088
SGD:S000002255 GO:GO:0005198 EMBL:BK006938 Gene3D:1.10.10.10
InterPro:IPR011991 Gene3D:1.25.40.10 GO:GO:0043248 GO:GO:0008541
GO:GO:0006511 EMBL:X95644 InterPro:IPR013143 SMART:SM00753
eggNOG:COG5159 GeneTree:ENSGT00530000063301 GO:GO:0034515 PDB:4B4T
PDBsum:4B4T HOGENOM:HOG000210093 KO:K03036 OrthoDB:EOG4K3Q51
EMBL:Z74145 PIR:S67639 RefSeq:NP_010186.1 ProteinModelPortal:Q12377
SMR:Q12377 DIP:DIP-1581N IntAct:Q12377 MINT:MINT-396028
STRING:Q12377 PaxDb:Q12377 PeptideAtlas:Q12377 EnsemblFungi:YDL097C
GeneID:851461 KEGG:sce:YDL097C OMA:DAMKCVA NextBio:968741
Genevestigator:Q12377 GermOnline:YDL097C Uniprot:Q12377
Length = 434
Score = 337 (123.7 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
Identities = 77/237 (32%), Positives = 118/237 (49%)
Query: 31 DEEVKAKEQNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDL 90
D+ +E +IL+LG+ Y G +L E I + ++ Q +K+K K++++L++ F +
Sbjct: 48 DKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQV 107
Query: 91 ETRTGMEVALCKECIEWAKEERRTFLRQSLEARLIALYFDTGEYTEAXXXXXXXXXXXXX 150
++ +C++ IE+AK E+R FL+ SL +L L++ +Y ++
Sbjct: 108 PDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKK 167
Query: 151 XXXXXXXXXXXXXXXXTYHXXXXXXXXXXXXXXXXXXXXXIYCPPKMQAALDLQSGILHA 210
YH IYCP + A LDL SGILH
Sbjct: 168 LDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHC 227
Query: 211 ADEQDFKTAFSYFYEAFEGFSTVD-HNH---AMMSLKYMLLSKIMLNTPEDVNQILS 263
D+ D+KTAFSYF+E+FE + + HN A LKYMLLSKIMLN +DV IL+
Sbjct: 228 EDK-DYKTAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILN 283
Score = 284 (105.0 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
Identities = 60/136 (44%), Positives = 84/136 (61%)
Query: 238 AMMSLKYMLLSKIMLNTPEDVNQILSELEDDTIVKAHIGTLYDNMLEQNLCRIIEPYSRV 297
AM ++ ++ +L+ + Q EL D + ++H LYD +LE NLC+IIEP+ V
Sbjct: 298 AMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECV 357
Query: 298 EVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFEGAEIDKTYEKALETIT 357
E+ I+K I LD VE KLSQMILDK F+G+LDQG L V+E D TY+ ALE +
Sbjct: 358 EISHISKIIGLDTQQVEGKLSQMILDKIFYGVLDQGNGWLYVYETPNQDATYDSALELVG 417
Query: 358 SMGKVIDTLYQKAKKL 373
+ KV+D L++KA L
Sbjct: 418 QLNKVVDQLFEKASVL 433
>TAIR|locus:2030017 [details] [associations]
symbol:ATS9 "AT1G29150" species:3702 "Arabidopsis
thaliana" [GO:0008541 "proteasome regulatory particle, lid
subcomplex" evidence=ISS] [GO:0009507 "chloroplast" evidence=ISM]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=RCA;TAS] [GO:0005634 "nucleus" evidence=TAS] [GO:0030163
"protein catabolic process" evidence=TAS] [GO:0046686 "response to
cadmium ion" evidence=IEP] [GO:0000502 "proteasome complex"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0009506
"plasmodesma" evidence=IDA] [GO:0006457 "protein folding"
evidence=RCA] [GO:0009408 "response to heat" evidence=RCA]
[GO:0009644 "response to high light intensity" evidence=RCA]
[GO:0034976 "response to endoplasmic reticulum stress"
evidence=RCA] [GO:0042023 "DNA endoreduplication" evidence=RCA]
[GO:0042542 "response to hydrogen peroxide" evidence=RCA]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=RCA] [GO:0043248 "proteasome assembly"
evidence=RCA] [GO:0051510 "regulation of unidimensional cell
growth" evidence=RCA] [GO:0051604 "protein maturation"
evidence=RCA] [GO:0051788 "response to misfolded protein"
evidence=RCA] [GO:0080129 "proteasome core complex assembly"
evidence=RCA] InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0009506
GO:GO:0005634 GO:GO:0046686 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0030163 GO:GO:0000502 EMBL:AC021043 InterPro:IPR013143
SMART:SM00753 eggNOG:COG5159 HOGENOM:HOG000210093 KO:K03036
OMA:SGILDQG EMBL:AF083890 EMBL:AY230834 EMBL:AY230835 EMBL:AY230836
EMBL:AY230837 EMBL:AF370203 EMBL:AY056311 IPI:IPI00521338
PIR:A86414 PIR:T52033 RefSeq:NP_174210.1 UniGene:At.21249
ProteinModelPortal:Q9LP45 SMR:Q9LP45 IntAct:Q9LP45 STRING:Q9LP45
PRIDE:Q9LP45 EnsemblPlants:AT1G29150.1 GeneID:839789
KEGG:ath:AT1G29150 TAIR:At1g29150 InParanoid:Q9LP45
PhylomeDB:Q9LP45 ProtClustDB:CLSN2679678 Genevestigator:Q9LP45
Uniprot:Q9LP45
Length = 419
Score = 326 (119.8 bits), Expect = 1.6e-53, Sum P(2) = 1.6e-53
Identities = 74/157 (47%), Positives = 94/157 (59%)
Query: 217 KTAFSYFYEAFEGFSTVDHNHAMMSLKYMLLSKIMLNTPEDVNQILSELEDDTIVKAHIG 276
K Y + V H+ SLK + N D ++LEDD IV H+
Sbjct: 270 KAGLQYVGPDLDAMKAVADAHSKRSLK------LFENALRDYK---AQLEDDPIVHRHLS 320
Query: 277 TLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKV 336
+LYD +LEQNLCR+IEP+SRVE+ IA+ I L VEKKLSQMILDKKF G LDQG
Sbjct: 321 SLYDTLLEQNLCRLIEPFSRVEIAHIAELIGLPLDHVEKKLSQMILDKKFAGTLDQGAGC 380
Query: 337 LIVFEGAEIDKTYEKALETITSMGKVIDTLYQKAKKL 373
LI+FE + D Y LETI +MGKV+D+LY ++ K+
Sbjct: 381 LIIFEDPKADAIYSATLETIANMGKVVDSLYVRSAKI 417
Score = 245 (91.3 bits), Expect = 1.6e-53, Sum P(2) = 1.6e-53
Identities = 52/134 (38%), Positives = 82/134 (61%)
Query: 4 AMMFERSASQISITGNSYKTGYEEENHDEEVKAKEQNILQLGEKYKQEGKAIELAELIKK 63
++ E ++S+ +IT Y+ + + E ++ KEQ I L ++ +E + +L +L+ K
Sbjct: 12 SLALEANSSE-AIT-ILYQVLEDPSSSPEAIRIKEQAITNLCDRLTEEKRGEDLRKLLTK 69
Query: 64 TRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQSLEAR 123
RPF S I KAK AK+VR ++D + T +++ LCKE +EW + E+RTFLRQ +EAR
Sbjct: 70 LRPFFSLIPKAKTAKIVRGIIDAVAKIPGTTDLQITLCKEMVEWTRAEKRTFLRQRVEAR 129
Query: 124 LIALYFDTGEYTEA 137
L AL + EY EA
Sbjct: 130 LAALLMENKEYVEA 143
Score = 209 (78.6 bits), Expect = 2.1e-40, Sum P(2) = 2.1e-40
Identities = 41/73 (56%), Positives = 54/73 (73%)
Query: 191 IYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEGFSTVDHNHAMMSLKYMLLSKI 250
IY PP Q +DLQSGILHA +E+D+KT +SYF+EAFE F+ + A+ SLKYMLL KI
Sbjct: 197 IYVPPAQQGTIDLQSGILHA-EEKDYKTGYSYFFEAFESFNALGDPRAVFSLKYMLLCKI 255
Query: 251 MLNTPEDVNQILS 263
M++ +DV I+S
Sbjct: 256 MVSQADDVAGIIS 268
>WB|WBGene00004462 [details] [associations]
symbol:rpn-6.1 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0006915
"apoptotic process" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0006915
GO:GO:0006950 GO:GO:0002119 GO:GO:0000003 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0043248 GO:GO:0006511 EMBL:FO081266
InterPro:IPR013143 SMART:SM00753 eggNOG:COG5159
GeneTree:ENSGT00530000063301 GO:GO:0022624 PIR:H88493
RefSeq:NP_001022621.1 RefSeq:NP_001022622.1
ProteinModelPortal:Q20938 SMR:Q20938 STRING:Q20938 PaxDb:Q20938
PRIDE:Q20938 EnsemblMetazoa:F57B9.10a GeneID:175972
KEGG:cel:CELE_F57B9.10 UCSC:F57B9.10a CTD:175972 WormBase:F57B9.10a
WormBase:F57B9.10b HOGENOM:HOG000210093 InParanoid:Q20938 KO:K03036
OMA:SGILDQG NextBio:890556 Uniprot:Q20938
Length = 438
Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
Identities = 133/349 (38%), Positives = 189/349 (54%)
Query: 31 DEEVKAKEQNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDL 90
D+++K KE +I++LG Q + EL +I++TRPFL + KAKAAKLVR LVD L +
Sbjct: 54 DDDIKKKEDSIMELGNILAQNKQTEELRNMIEQTRPFLVSLGKAKAAKLVRDLVDLCLKI 113
Query: 91 ETRTG-MEVALCKECIEWAKEERRTFLRQSLEARLIALYFDTGEYTEAXXXXXXXXXXXX 149
+ + G ++V L KECI+WA E+ RTFLRQ+L ARL+ LY D YT+A
Sbjct: 114 DDQDGDIKVGLVKECIQWATEQNRTFLRQTLTARLVRLYNDLQRYTQALPLAADLIRELK 173
Query: 150 XXXXXXXXXXXXXXXXXTYHXXXXXXXXXXXXXXXXXXXXXIYCPPKMQAALDLQSGILH 209
Y+ IY P+MQAALDLQSGILH
Sbjct: 174 KVDDKDVLVEVELEESKAYYNLSNIGRARASLTGARTTANAIYVNPRMQAALDLQSGILH 233
Query: 210 AADEQDFKTAFSYFYEAFEGFSTVDHN-HAMMSLKYMLLSKIMLNTPEDVNQILSELEDD 268
AADE+DFKTAFSYFYEAFEG+ +VD A+ +LKYMLL K+ML+ P++VN +LS
Sbjct: 234 AADEKDFKTAFSYFYEAFEGYDSVDEKVSALTALKYMLLCKVMLDLPDEVNSLLSA---- 289
Query: 269 TIVKAHIGTLYDNMLEQNLC---RIIEPYSRVEVGFIAKSIKLDELAVEK---KLSQMIL 322
+ + G+ D M R ++ + +V G + +++D + V K LS+ +L
Sbjct: 290 KLALKYNGSDLDAMKAIAAAAQKRSLKDF-QVAFGSFPQELQMDPV-VRKHFHSLSERML 347
Query: 323 DKKFHGILDQGEKVLI--VFEGAEIDKT-YEKALETITSMGKVIDTLYQ 368
+K I++ V I V + ID++ EK L + K+ +L Q
Sbjct: 348 EKDLCRIIEPYSFVQIEHVAQQIGIDRSKVEKKLSQMILDQKLSGSLDQ 396
Score = 298 (110.0 bits), Expect = 2.0e-26, P = 2.0e-26
Identities = 60/110 (54%), Positives = 81/110 (73%)
Query: 264 ELEDDTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILD 323
EL+ D +V+ H +L + MLE++LCRIIEPYS V++ +A+ I +D VEKKLSQMILD
Sbjct: 328 ELQMDPVVRKHFHSLSERMLEKDLCRIIEPYSFVQIEHVAQQIGIDRSKVEKKLSQMILD 387
Query: 324 KKFHGILDQGEKVLIVFEGAEIDKTYEKALETITSMGKVIDTLYQKAKKL 373
+K G LDQGE +LIVFE A D+ Y+ AL+TI +MG+V+D LY A K+
Sbjct: 388 QKLSGSLDQGEGMLIVFEIAVPDEAYQTALDTIHAMGEVVDALYSNASKI 437
>UNIPROTKB|Q20938 [details] [associations]
symbol:rpn-6.1 "Probable 26S proteasome regulatory subunit
rpn-6.1" species:6239 "Caenorhabditis elegans" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IDA]
[GO:0043248 "proteasome assembly" evidence=IDA] [GO:0006950
"response to stress" evidence=IDA] [GO:0022624 "proteasome
accessory complex" evidence=TAS] [GO:0008340 "determination of
adult lifespan" evidence=IDA] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 GO:GO:0005634 GO:GO:0008340 GO:GO:0009792
GO:GO:0006915 GO:GO:0006950 GO:GO:0002119 GO:GO:0000003
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0043248 GO:GO:0006511
EMBL:FO081266 InterPro:IPR013143 SMART:SM00753 eggNOG:COG5159
GeneTree:ENSGT00530000063301 GO:GO:0022624 PIR:H88493
RefSeq:NP_001022621.1 RefSeq:NP_001022622.1
ProteinModelPortal:Q20938 SMR:Q20938 STRING:Q20938 PaxDb:Q20938
PRIDE:Q20938 EnsemblMetazoa:F57B9.10a GeneID:175972
KEGG:cel:CELE_F57B9.10 UCSC:F57B9.10a CTD:175972 WormBase:F57B9.10a
WormBase:F57B9.10b HOGENOM:HOG000210093 InParanoid:Q20938 KO:K03036
OMA:SGILDQG NextBio:890556 Uniprot:Q20938
Length = 438
Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
Identities = 133/349 (38%), Positives = 189/349 (54%)
Query: 31 DEEVKAKEQNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDL 90
D+++K KE +I++LG Q + EL +I++TRPFL + KAKAAKLVR LVD L +
Sbjct: 54 DDDIKKKEDSIMELGNILAQNKQTEELRNMIEQTRPFLVSLGKAKAAKLVRDLVDLCLKI 113
Query: 91 ETRTG-MEVALCKECIEWAKEERRTFLRQSLEARLIALYFDTGEYTEAXXXXXXXXXXXX 149
+ + G ++V L KECI+WA E+ RTFLRQ+L ARL+ LY D YT+A
Sbjct: 114 DDQDGDIKVGLVKECIQWATEQNRTFLRQTLTARLVRLYNDLQRYTQALPLAADLIRELK 173
Query: 150 XXXXXXXXXXXXXXXXXTYHXXXXXXXXXXXXXXXXXXXXXIYCPPKMQAALDLQSGILH 209
Y+ IY P+MQAALDLQSGILH
Sbjct: 174 KVDDKDVLVEVELEESKAYYNLSNIGRARASLTGARTTANAIYVNPRMQAALDLQSGILH 233
Query: 210 AADEQDFKTAFSYFYEAFEGFSTVDHN-HAMMSLKYMLLSKIMLNTPEDVNQILSELEDD 268
AADE+DFKTAFSYFYEAFEG+ +VD A+ +LKYMLL K+ML+ P++VN +LS
Sbjct: 234 AADEKDFKTAFSYFYEAFEGYDSVDEKVSALTALKYMLLCKVMLDLPDEVNSLLSA---- 289
Query: 269 TIVKAHIGTLYDNMLEQNLC---RIIEPYSRVEVGFIAKSIKLDELAVEK---KLSQMIL 322
+ + G+ D M R ++ + +V G + +++D + V K LS+ +L
Sbjct: 290 KLALKYNGSDLDAMKAIAAAAQKRSLKDF-QVAFGSFPQELQMDPV-VRKHFHSLSERML 347
Query: 323 DKKFHGILDQGEKVLI--VFEGAEIDKT-YEKALETITSMGKVIDTLYQ 368
+K I++ V I V + ID++ EK L + K+ +L Q
Sbjct: 348 EKDLCRIIEPYSFVQIEHVAQQIGIDRSKVEKKLSQMILDQKLSGSLDQ 396
Score = 298 (110.0 bits), Expect = 2.0e-26, P = 2.0e-26
Identities = 60/110 (54%), Positives = 81/110 (73%)
Query: 264 ELEDDTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILD 323
EL+ D +V+ H +L + MLE++LCRIIEPYS V++ +A+ I +D VEKKLSQMILD
Sbjct: 328 ELQMDPVVRKHFHSLSERMLEKDLCRIIEPYSFVQIEHVAQQIGIDRSKVEKKLSQMILD 387
Query: 324 KKFHGILDQGEKVLIVFEGAEIDKTYEKALETITSMGKVIDTLYQKAKKL 373
+K G LDQGE +LIVFE A D+ Y+ AL+TI +MG+V+D LY A K+
Sbjct: 388 QKLSGSLDQGEGMLIVFEIAVPDEAYQTALDTIHAMGEVVDALYSNASKI 437
>UNIPROTKB|G4NAA5 [details] [associations]
symbol:MGG_03211 "26S proteasome non-ATPase regulatory
subunit 11" species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000717 InterPro:IPR011990 Pfam:PF01399
SMART:SM00088 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:1.25.40.10 GO:GO:0000502 EMBL:CM001234 InterPro:IPR013143
SMART:SM00753 KO:K03036 RefSeq:XP_003716769.1
EnsemblFungi:MGG_03211T0 GeneID:2676755 KEGG:mgr:MGG_03211
Uniprot:G4NAA5
Length = 423
Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
Identities = 95/234 (40%), Positives = 127/234 (54%)
Query: 31 DEEVKAKEQNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDL 90
D VK E +L LGE Y+ + + +L ELIK++R LS +KAK AKLVR L+DFF +
Sbjct: 40 DAAVKEYELALLSLGELYRDQKNSNDLVELIKRSRTVLSSFAKAKTAKLVRQLLDFFDGI 99
Query: 91 ETRTGMEVALCKECIEWAKEERRTFLRQSLEARLIALYFDTGEYTEAXXXXXXXXXXXXX 150
T ++V++ K CIEWA ERRTFLRQ+LE RL+ L+ Y EA
Sbjct: 100 PNTTDLQVSVTKSCIEWATSERRTFLRQNLETRLVTLHMAKQSYYEALTLINGLLKELKR 159
Query: 151 XXXXXXXXXXXXXXXXTYHXXXXXXXXXXXXXXXXXXXXXIYCPPKMQAALDLQSGILHA 210
YH +Y PP +QA LD+QSG+LHA
Sbjct: 160 LDDKLMLVEVQLLESRVYHALGNISKARAALTSARTSAASVYTPPMLQANLDMQSGMLHA 219
Query: 211 ADEQDFKTAFSYFYEAFEGFSTVDHN-HAMMSLKYMLLSKIMLNTPEDVNQILS 263
D+ DF TAFSYF EA +G+ + D +A +L+YMLL KIMLN +DVN +++
Sbjct: 220 EDK-DFNTAFSYFIEALDGYHSQDATKNATAALQYMLLCKIMLNLVDDVNTLMA 272
Score = 278 (102.9 bits), Expect = 3.5e-24, P = 3.5e-24
Identities = 63/151 (41%), Positives = 86/151 (56%)
Query: 217 KTAFSYFYEAFEGFSTVDHNHAMMSLKYMLLSKIMLNTPEDVNQILSELEDDTIVKAHIG 276
K A Y ++ E + HA SL+ + + EL D V++H+
Sbjct: 274 KQAAKYAGQSLEAMKAIARAHANRSLE---------EYEQSLAAYRHELGGDAFVRSHLR 324
Query: 277 TLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKV 336
LYD MLEQNL ++IEP+SRVE+ IAK + LD VE+KLSQMILDK G+LDQG
Sbjct: 325 RLYDAMLEQNLIKVIEPFSRVEIDHIAKMVGLDTQQVERKLSQMILDKVIIGVLDQGAGC 384
Query: 337 LIVFEGAEIDKTYEKALETITSMGKVIDTLY 367
LI+F+ + D+ Y+ AL TI + V+D LY
Sbjct: 385 LIIFDETQRDEAYDHALATIEKLSSVVDVLY 415
>DICTYBASE|DDB_G0281315 [details] [associations]
symbol:psmD11 "26S proteasome non-ATPase regulatory
subunit 11" species:44689 "Dictyostelium discoideum" [GO:0006972
"hyperosmotic response" evidence=IEP] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISS]
[GO:0005838 "proteasome regulatory particle" evidence=ISS]
[GO:0004175 "endopeptidase activity" evidence=ISS] [GO:0000502
"proteasome complex" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000717 InterPro:IPR011990 Pfam:PF01399
SMART:SM00088 dictyBase:DDB_G0281315 GenomeReviews:CM000152_GR
EMBL:AAFI02000040 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006972 GO:GO:0004175 Gene3D:1.25.40.10 GO:GO:0006511
InterPro:IPR013143 SMART:SM00753 eggNOG:COG5159 GO:GO:0005838
KO:K03036 OMA:SGILDQG RefSeq:XP_640861.1 STRING:Q54UB5 PRIDE:Q54UB5
EnsemblProtists:DDB0232994 GeneID:8622917 KEGG:ddi:DDB_G0281315
ProtClustDB:CLSZ2729047 Uniprot:Q54UB5
Length = 413
Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
Identities = 92/296 (31%), Positives = 141/296 (47%)
Query: 37 KEQNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGM 96
KE+ IL+L + + + GK +L L++ RPF +ISK K K+VR+ +D F +
Sbjct: 37 KEEAILRLAKLFVKIGKGDQLPTLLRSVRPFFDKISKPKTDKIVRNFIDIFSTVPDNLTT 96
Query: 97 EVALCKECIEWAKEERRTFLRQSLEARLIALYFDTGEYTEAXXXXXXXXXXXXXXXXXXX 156
+ KE I+W K+ R +LRQ LE +L L F+ +Y A
Sbjct: 97 LIEFVKENIQWCKDTNRIYLRQRLETKLFTLMFEAKDYANALSGLTTLLTEIKRLDDKPL 156
Query: 157 XXXXXXXXXXTYHXXXXXXXXXXXXXXXXXXXXXIYCPPKMQAALDLQSGILHAADEQDF 216
H IYCPPK+QA +D+QSGILH+ +E+D+
Sbjct: 157 LVEIQLVESRIQHALKNIPKARAALTSARTNANTIYCPPKLQAEIDMQSGILHS-EEKDY 215
Query: 217 KTAFSYFYEAFEGFSTVDHNHAMMSLKYMLLSKIMLNTPEDVNQILSELEDDTIVKAHIG 276
KTAFSYF+E++E + +++ AM +LKYMLL KIM N +DV+ +V IG
Sbjct: 216 KTAFSYFFESYETYDSLEDPFAMKALKYMLLCKIMTNQTDDVH---------ALVNGKIG 266
Query: 277 TLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQ 332
Y N N R IE +++ +S+ + + ++ Q+ D H L +
Sbjct: 267 LKYHN----N--RSIEAITQISKSHAKRSLHMFQEVTKEFSDQLSDDPIIHSHLTE 316
Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
Identities = 67/128 (52%), Positives = 91/128 (71%)
Query: 248 SKIMLNTPEDVNQILSE-LEDDTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSI 306
+K L+ ++V + S+ L DD I+ +H+ LY N+LEQNLCRIIEP+SRVE+ IAK I
Sbjct: 286 AKRSLHMFQEVTKEFSDQLSDDPIIHSHLTELYSNLLEQNLCRIIEPFSRVEISHIAKLI 345
Query: 307 KLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFEGAEIDKTYEKALETITSMGKVIDTL 366
L VE+KLS MILDKK++GILDQG LIVFE + DK + +LETI ++ +V+D L
Sbjct: 346 DLPVDVVERKLSLMILDKKYNGILDQGTGTLIVFEEQKEDKLFNCSLETIGALSRVVDLL 405
Query: 367 YQKAKKLT 374
Y+K KL+
Sbjct: 406 YEKTNKLS 413
>GENEDB_PFALCIPARUM|PF14_0025 [details] [associations]
symbol:PF14_0025 "proteosome subunit, putative"
species:5833 "Plasmodium falciparum" [GO:0005838 "proteasome
regulatory particle" evidence=ISS] [GO:0004175 "endopeptidase
activity" evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS]
InterPro:IPR000717 Pfam:PF01399 SMART:SM00088 GO:GO:0006508
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0004175 EMBL:AE014187
GO:GO:0005838 KO:K03036 RefSeq:XP_001348198.1
ProteinModelPortal:Q8IM66 IntAct:Q8IM66 MINT:MINT-1600102
PRIDE:Q8IM66 EnsemblProtists:PF14_0025:mRNA GeneID:811608
KEGG:pfa:PF14_0025 EuPathDB:PlasmoDB:PF3D7_1402300
HOGENOM:HOG000281396 ProtClustDB:CLSZ2444932 Uniprot:Q8IM66
Length = 666
Score = 200 (75.5 bits), Expect = 3.4e-25, Sum P(3) = 3.4e-25
Identities = 38/104 (36%), Positives = 68/104 (65%)
Query: 268 DTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFH 327
D ++ ++ LY+ +LE+N+ +IIE YS +++ +I + + LD + KLS+MILDKK +
Sbjct: 560 DKVIYNYLKELYELLLEKNILKIIEAYSCIDLHYIGQKLNLDINKIISKLSEMILDKKLN 619
Query: 328 GILDQGEKVLIVFEGAEIDKTYEKALETITSMGKVIDTLYQKAK 371
G LDQ +LI+++ K Y+ L+ I ++ + +D LY+KA+
Sbjct: 620 GTLDQNVGILILYDDMPETKMYQNVLDIINNLTESVDILYEKAQ 663
Score = 108 (43.1 bits), Expect = 3.4e-25, Sum P(3) = 3.4e-25
Identities = 32/123 (26%), Positives = 57/123 (46%)
Query: 16 ITGNSYKTGYEEENHDEEVKAKEQNILQLGEKYKQEGKAIE-LAELIKKTRPFLSQISKA 74
I S + +E+ +E+V ++ L Y K I+ L E + + + +A
Sbjct: 57 INDKSNEELFEKRVTNEKVMQINDKLIYLLCDYYINKKEIDKLIEFTTSNENYFNILPQA 116
Query: 75 KAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQSLEARLIALYFDTGEY 134
K AKL+R++V+ + K+ + WA E++R FLR +E ++I LY +Y
Sbjct: 117 KTAKLIRNIVEKISKKIRNISTLYIIFKKYMNWAYEKKRNFLRCRIEVKIIILYIIKQKY 176
Query: 135 TEA 137
A
Sbjct: 177 KTA 179
Score = 81 (33.6 bits), Expect = 3.4e-25, Sum P(3) = 3.4e-25
Identities = 24/79 (30%), Positives = 43/79 (54%)
Query: 197 MQAALDLQSGILHAADEQDFKTAFSYFYEAFEGFSTV---DHNHAM--MSLKYMLLSKIM 251
+ + +DL SGIL E+D+K+A+ Y YE +E T HN+ M +S K+ I+
Sbjct: 239 INSEIDLLSGILFIY-EKDYKSAYIYLYECYETLYTYIYNSHNNTMDFLSKKHNDFYSIL 297
Query: 252 LNTPEDVNQILSELEDDTI 270
++ + + I S+ + +I
Sbjct: 298 IHNIINTSTISSQNKTKSI 316
Score = 67 (28.6 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 28/132 (21%), Positives = 65/132 (49%)
Query: 233 VDHNHAMMSLKYMLLSKIML-NTPEDVNQILSELEDDTIVK-AHIGTLYD-NMLEQNLCR 289
+++ ++ LKYMLL K++ N +++N IL E V I L D + +N R
Sbjct: 484 IENVKIIIPLKYMLLCKVLEENNRKEINNILCENNKLNYVSHKEIQILLDISKSYEN--R 541
Query: 290 IIEPYSRVEVGFIAKSIKLDELAVE--KKLSQMILDKKFHGILDQGEKVLIVFEGAEIDK 347
++ + ++ + I +D++ K+L +++L+K I++ + + + G +++
Sbjct: 542 SLDIFEKIIKNSLFL-INIDKVIYNYLKELYELLLEKNILKIIEAYSCIDLHYIGQKLNL 600
Query: 348 TYEKALETITSM 359
K + ++ M
Sbjct: 601 DINKIISKLSEM 612
>UNIPROTKB|Q8IM66 [details] [associations]
symbol:PF14_0025 "Proteosome subunit, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004175
"endopeptidase activity" evidence=ISS] [GO:0005838 "proteasome
regulatory particle" evidence=ISS] [GO:0006508 "proteolysis"
evidence=ISS] InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
GO:GO:0006508 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0004175
EMBL:AE014187 GO:GO:0005838 KO:K03036 RefSeq:XP_001348198.1
ProteinModelPortal:Q8IM66 IntAct:Q8IM66 MINT:MINT-1600102
PRIDE:Q8IM66 EnsemblProtists:PF14_0025:mRNA GeneID:811608
KEGG:pfa:PF14_0025 EuPathDB:PlasmoDB:PF3D7_1402300
HOGENOM:HOG000281396 ProtClustDB:CLSZ2444932 Uniprot:Q8IM66
Length = 666
Score = 200 (75.5 bits), Expect = 3.4e-25, Sum P(3) = 3.4e-25
Identities = 38/104 (36%), Positives = 68/104 (65%)
Query: 268 DTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFH 327
D ++ ++ LY+ +LE+N+ +IIE YS +++ +I + + LD + KLS+MILDKK +
Sbjct: 560 DKVIYNYLKELYELLLEKNILKIIEAYSCIDLHYIGQKLNLDINKIISKLSEMILDKKLN 619
Query: 328 GILDQGEKVLIVFEGAEIDKTYEKALETITSMGKVIDTLYQKAK 371
G LDQ +LI+++ K Y+ L+ I ++ + +D LY+KA+
Sbjct: 620 GTLDQNVGILILYDDMPETKMYQNVLDIINNLTESVDILYEKAQ 663
Score = 108 (43.1 bits), Expect = 3.4e-25, Sum P(3) = 3.4e-25
Identities = 32/123 (26%), Positives = 57/123 (46%)
Query: 16 ITGNSYKTGYEEENHDEEVKAKEQNILQLGEKYKQEGKAIE-LAELIKKTRPFLSQISKA 74
I S + +E+ +E+V ++ L Y K I+ L E + + + +A
Sbjct: 57 INDKSNEELFEKRVTNEKVMQINDKLIYLLCDYYINKKEIDKLIEFTTSNENYFNILPQA 116
Query: 75 KAAKLVRSLVDFFLDLETRTGMEVALCKECIEWAKEERRTFLRQSLEARLIALYFDTGEY 134
K AKL+R++V+ + K+ + WA E++R FLR +E ++I LY +Y
Sbjct: 117 KTAKLIRNIVEKISKKIRNISTLYIIFKKYMNWAYEKKRNFLRCRIEVKIIILYIIKQKY 176
Query: 135 TEA 137
A
Sbjct: 177 KTA 179
Score = 81 (33.6 bits), Expect = 3.4e-25, Sum P(3) = 3.4e-25
Identities = 24/79 (30%), Positives = 43/79 (54%)
Query: 197 MQAALDLQSGILHAADEQDFKTAFSYFYEAFEGFSTV---DHNHAM--MSLKYMLLSKIM 251
+ + +DL SGIL E+D+K+A+ Y YE +E T HN+ M +S K+ I+
Sbjct: 239 INSEIDLLSGILFIY-EKDYKSAYIYLYECYETLYTYIYNSHNNTMDFLSKKHNDFYSIL 297
Query: 252 LNTPEDVNQILSELEDDTI 270
++ + + I S+ + +I
Sbjct: 298 IHNIINTSTISSQNKTKSI 316
Score = 67 (28.6 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 28/132 (21%), Positives = 65/132 (49%)
Query: 233 VDHNHAMMSLKYMLLSKIML-NTPEDVNQILSELEDDTIVK-AHIGTLYD-NMLEQNLCR 289
+++ ++ LKYMLL K++ N +++N IL E V I L D + +N R
Sbjct: 484 IENVKIIIPLKYMLLCKVLEENNRKEINNILCENNKLNYVSHKEIQILLDISKSYEN--R 541
Query: 290 IIEPYSRVEVGFIAKSIKLDELAVE--KKLSQMILDKKFHGILDQGEKVLIVFEGAEIDK 347
++ + ++ + I +D++ K+L +++L+K I++ + + + G +++
Sbjct: 542 SLDIFEKIIKNSLFL-INIDKVIYNYLKELYELLLEKNILKIIEAYSCIDLHYIGQKLNL 600
Query: 348 TYEKALETITSM 359
K + ++ M
Sbjct: 601 DINKIISKLSEM 612
>UNIPROTKB|F1NPA2 [details] [associations]
symbol:PSMD11 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0022624 "proteasome accessory complex"
evidence=IEA] [GO:0043248 "proteasome assembly" evidence=IEA]
[GO:0048863 "stem cell differentiation" evidence=IEA]
GeneTree:ENSGT00530000063301 EMBL:AADN02053959 EMBL:AADN02053960
IPI:IPI00598610 Ensembl:ENSGALT00000040727 OMA:LYLFLDM
Uniprot:F1NPA2
Length = 84
Score = 177 (67.4 bits), Expect = 3.3e-13, P = 3.3e-13
Identities = 38/69 (55%), Positives = 49/69 (71%)
Query: 27 EENHDEEVKAKEQNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDF 86
+EN +E V+ KEQ+IL+LG + G+A EL L+K RPFL I KAKAA+LVRSL+
Sbjct: 16 QENDEEAVQVKEQSILELGSLLAKTGQAEELGGLLKYVRPFLISIIKAKAARLVRSLLYL 75
Query: 87 FLDLETRTG 95
FLD+E TG
Sbjct: 76 FLDMEAATG 84
>UNIPROTKB|J3KSW3 [details] [associations]
symbol:PSMD11 "26S proteasome non-ATPase regulatory subunit
11" species:9606 "Homo sapiens" [GO:0022624 "proteasome accessory
complex" evidence=IEA] HGNC:HGNC:9556 EMBL:AC005899 EMBL:AC079336
Ensembl:ENST00000578213 Uniprot:J3KSW3
Length = 45
Score = 176 (67.0 bits), Expect = 4.2e-13, P = 4.2e-13
Identities = 32/45 (71%), Positives = 37/45 (82%)
Query: 90 LETRTGMEVALCKECIEWAKEERRTFLRQSLEARLIALYFDTGEY 134
+E TG EV LC ECIEWAK E+RTFLRQ+LEARL++LYFDT Y
Sbjct: 1 MEAATGQEVELCLECIEWAKSEKRTFLRQALEARLVSLYFDTKRY 45
>TAIR|locus:2059289 [details] [associations]
symbol:FUS12 "FUSCA 12" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM;TAS] [GO:0030163
"protein catabolic process" evidence=TAS] [GO:0008180 "signalosome"
evidence=TAS;IPI] [GO:0009640 "photomorphogenesis"
evidence=RCA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010388 "cullin deneddylation" evidence=RCA;IMP] [GO:0005829
"cytosol" evidence=IDA] InterPro:IPR000717 InterPro:IPR011990
Pfam:PF01399 SMART:SM00088 GO:GO:0007275 GO:GO:0005829
EMBL:CP002685 GenomeReviews:CT485783_GR Gene3D:1.10.10.10
InterPro:IPR011991 Gene3D:1.25.40.10 GO:GO:0030163 GO:GO:0009585
EMBL:AC005623 GO:GO:0008180 GO:GO:0010388 InterPro:IPR013143
SMART:SM00753 EMBL:AF395058 EMBL:AY050437 EMBL:AY133536
EMBL:AY087622 IPI:IPI00525604 PIR:D84667 RefSeq:NP_565632.1
UniGene:At.13162 ProteinModelPortal:Q8W207 SMR:Q8W207 IntAct:Q8W207
STRING:Q8W207 PaxDb:Q8W207 PRIDE:Q8W207 EnsemblPlants:AT2G26990.1
GeneID:817241 KEGG:ath:AT2G26990 TAIR:At2g26990 eggNOG:COG5159
HOGENOM:HOG000194333 InParanoid:Q8W207 KO:K12176 OMA:SNSEPDV
PhylomeDB:Q8W207 ProtClustDB:CLSN2688459 Genevestigator:Q8W207
GermOnline:AT2G26990 Uniprot:Q8W207
Length = 439
Score = 107 (42.7 bits), Expect = 3.3e-10, Sum P(3) = 3.3e-10
Identities = 25/100 (25%), Positives = 53/100 (53%)
Query: 267 DDTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKF 326
DD ++ ++ L + Q L ++I+PY+++ + FI+K + + E V + L +ILD +
Sbjct: 335 DDPFIRNYMEDLLKKVRTQVLLKLIKPYTKIGIPFISKELNVPETDVTELLVSLILDSRI 394
Query: 327 HGILDQGEKVLIVFE---GAEIDKTYEKALETITSMGKVI 363
G +D+ + L+ + G ++ K +K + S+ I
Sbjct: 395 DGHIDEMNRYLLRGDSGNGRKLHKAVDKWNSQLKSLSSNI 434
Score = 75 (31.5 bits), Expect = 3.3e-10, Sum P(3) = 3.3e-10
Identities = 16/65 (24%), Positives = 37/65 (56%)
Query: 195 PKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEGFSTVDHNHAMMSLKYMLLSKIMLNT 254
P++ + G +H A+ Q ++ A + F+EAF+ + + + LKY++L+ +++ +
Sbjct: 227 PRIMGIIRECGGKMHMAERQ-WEEAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMES 285
Query: 255 PEDVN 259
+VN
Sbjct: 286 --EVN 288
Score = 72 (30.4 bits), Expect = 3.3e-10, Sum P(3) = 3.3e-10
Identities = 31/125 (24%), Positives = 62/125 (49%)
Query: 15 SITGNSYKTGYEEENHDEEVKAKEQNILQLGEKYKQEGKAIELAELIKKTRPFL-SQISK 73
+++G + E E D KA +Q + + Y + GK E+ E + ++ S +++
Sbjct: 44 ALSGFAEVVQMEPEKADWGFKALKQTV----KIYYRLGKYKEMMEAYTEMLTYIKSAVTR 99
Query: 74 AKAAKLVRSLVDFFLDLETR-TGMEVALCK---ECIEWAKEERRTFLRQSLEARLIALYF 129
+ K + +++DF ++ TG+ + + +E AK ER F + +L +L ++F
Sbjct: 100 NYSEKCINNIMDFVSGSASQNTGLLQEFYQTTLKALEEAKNERLWF-KTNL--KLCNIWF 156
Query: 130 DTGEY 134
D GEY
Sbjct: 157 DIGEY 161
>ASPGD|ASPL0000076227 [details] [associations]
symbol:csnB species:162425 "Emericella nidulans"
[GO:0008180 "signalosome" evidence=IDA] [GO:0070791 "cleistothecium
development" evidence=IMP] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005829 "cytosol" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] InterPro:IPR000717
InterPro:IPR011990 Pfam:PF01399 SMART:SM00088 GO:GO:0005737
Gene3D:1.10.10.10 InterPro:IPR011991 Gene3D:1.25.40.10
EMBL:BN001303 GO:GO:0008180 InterPro:IPR013143 SMART:SM00753
eggNOG:COG5159 HOGENOM:HOG000194333 KO:K12176 OMA:SNSEPDV
EMBL:AACD01000081 RefSeq:XP_662387.1 STRING:Q5B3U7
EnsemblFungi:CADANIAT00005639 GeneID:2872575 KEGG:ani:AN4783.2
OrthoDB:EOG4PZNGN Uniprot:Q5B3U7
Length = 506
Score = 121 (47.7 bits), Expect = 9.0e-08, Sum P(2) = 9.0e-08
Identities = 31/116 (26%), Positives = 61/116 (52%)
Query: 260 QILSELED---DTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKK 316
++LS+ D D + +I + NM + + ++I PY+R + FI+K IK+ +
Sbjct: 333 EVLSKNPDVLADPFIAENIDEVSRNMRTKAILKLIAPYTRFTLSFISKHIKISVTEAQDI 392
Query: 317 LSQMILDKKFHGILDQGEKVLIVFEGAEIDKTYEKALETITSMGKVIDTLYQKAKK 372
LS +ILDKK + +DQ ++V +++++ L ++ + + TL+Q K
Sbjct: 393 LSFLILDKKLNAKIDQESGTVVVESASDVER-----LRSVEEWNESLRTLWQVTLK 443
Score = 73 (30.8 bits), Expect = 9.0e-08, Sum P(2) = 9.0e-08
Identities = 17/70 (24%), Positives = 38/70 (54%)
Query: 195 PKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEGFSTVDHNHAMMSLKYMLLSKIMLNT 254
PK+ + G +H ++E +++ A S F+E+F + + LKY++L+ +++ +
Sbjct: 236 PKIMGIIRECGGKMHMSEE-NWEEAQSDFFESFRNYDEAGSMQRIQVLKYLVLTTMLMKS 294
Query: 255 PEDVNQILSE 264
D+N S+
Sbjct: 295 --DINPFHSQ 302
>UNIPROTKB|E2REA8 [details] [associations]
symbol:COPS2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0010388 "cullin
deneddylation" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IEA] [GO:0008180 "signalosome" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003714 "transcription corepressor
activity" evidence=IEA] InterPro:IPR000717 InterPro:IPR011990
Pfam:PF01399 SMART:SM00088 GO:GO:0005737 GO:GO:0003714
GO:GO:0045892 GO:GO:0008283 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:1.25.40.10 GO:GO:0008180 GO:GO:0010388 InterPro:IPR013143
SMART:SM00753 KO:K12176 OMA:SNSEPDV GeneTree:ENSGT00530000063301
CTD:9318 InterPro:IPR019280 Pfam:PF10075 EMBL:AAEX03016114
RefSeq:XP_535470.1 ProteinModelPortal:E2REA8 PRIDE:E2REA8
Ensembl:ENSCAFT00000023590 GeneID:478295 KEGG:cfa:478295
Uniprot:E2REA8
Length = 443
Score = 145 (56.1 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 29/75 (38%), Positives = 45/75 (60%)
Query: 263 SELEDDTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMIL 322
S + DD ++ HI L N+ Q L ++I+PY+R+ + FI+K + +D VE L Q IL
Sbjct: 335 SNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCIL 394
Query: 323 DKKFHGILDQGEKVL 337
D HG +DQ ++L
Sbjct: 395 DNTIHGRIDQVNQLL 409
>UNIPROTKB|P61201 [details] [associations]
symbol:COPS2 "COP9 signalosome complex subunit 2"
species:9606 "Homo sapiens" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0003714 "transcription corepressor activity" evidence=IEA]
[GO:0008283 "cell proliferation" evidence=IEA] [GO:0030182 "neuron
differentiation" evidence=IEA] [GO:0004871 "signal transducer
activity" evidence=NAS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0007165 "signal
transduction" evidence=NAS] [GO:0008180 "signalosome" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0010388 "cullin deneddylation" evidence=IDA]
InterPro:IPR000717 InterPro:IPR011990 Pfam:PF01399 SMART:SM00088
GO:GO:0005737 GO:GO:0003714 GO:GO:0045892 GO:GO:0030182
GO:GO:0008283 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006366
GO:GO:0004871 Gene3D:1.25.40.10 GO:GO:0008180 CleanEx:HS_CSN2
GO:GO:0010388 InterPro:IPR013143 SMART:SM00753 eggNOG:COG5159
KO:K12176 OMA:SNSEPDV CTD:9318 HOVERGEN:HBG003924 OrthoDB:EOG43N7CN
EMBL:AF084260 EMBL:AF100762 EMBL:AF212227 EMBL:CR542063
EMBL:BC012629 EMBL:L40388 EMBL:AF120268 IPI:IPI00018813
IPI:IPI00743825 RefSeq:NP_001137359.1 RefSeq:NP_004227.1
UniGene:Hs.369614 ProteinModelPortal:P61201 SMR:P61201
DIP:DIP-42076N IntAct:P61201 MINT:MINT-1204035 STRING:P61201
PhosphoSite:P61201 DMDM:47117681 PaxDb:P61201 PRIDE:P61201
DNASU:9318 Ensembl:ENST00000299259 Ensembl:ENST00000388901
GeneID:9318 KEGG:hsa:9318 UCSC:uc001zxf.3 UCSC:uc001zxh.3
GeneCards:GC15M049417 HGNC:HGNC:30747 HPA:HPA016867 HPA:HPA018271
MIM:604508 neXtProt:NX_P61201 PharmGKB:PA134952445 GenomeRNAi:9318
NextBio:34905 ArrayExpress:P61201 Bgee:P61201 CleanEx:HS_COPS2
Genevestigator:P61201 GermOnline:ENSG00000166200 InterPro:IPR019280
Pfam:PF10075 Uniprot:P61201
Length = 443
Score = 145 (56.1 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 29/75 (38%), Positives = 45/75 (60%)
Query: 263 SELEDDTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMIL 322
S + DD ++ HI L N+ Q L ++I+PY+R+ + FI+K + +D VE L Q IL
Sbjct: 335 SNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCIL 394
Query: 323 DKKFHGILDQGEKVL 337
D HG +DQ ++L
Sbjct: 395 DNTIHGRIDQVNQLL 409
>MGI|MGI:1330276 [details] [associations]
symbol:Cops2 "COP9 (constitutive photomorphogenic) homolog,
subunit 2 (Arabidopsis thaliana)" species:10090 "Mus musculus"
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0003714 "transcription
corepressor activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0008180 "signalosome"
evidence=ISO;IDA] [GO:0008283 "cell proliferation" evidence=IMP]
[GO:0010388 "cullin deneddylation" evidence=ISO] [GO:0030182
"neuron differentiation" evidence=ISO] [GO:0035914 "skeletal muscle
cell differentiation" evidence=IMP] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
InterPro:IPR000717 InterPro:IPR011990 Pfam:PF01399 SMART:SM00088
MGI:MGI:1330276 GO:GO:0005737 GO:GO:0003714 GO:GO:0045892
GO:GO:0030182 GO:GO:0008283 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:1.25.40.10 GO:GO:0008180 GO:GO:0035914 CleanEx:MM_CSN2
GO:GO:0010388 InterPro:IPR013143 SMART:SM00753 eggNOG:COG5159
KO:K12176 OMA:SNSEPDV GeneTree:ENSGT00530000063301 CTD:9318
HOVERGEN:HBG003924 InterPro:IPR019280 Pfam:PF10075 EMBL:AF087688
EMBL:AF114247 EMBL:AF114236 EMBL:AF114237 EMBL:AF114238
EMBL:AF114239 EMBL:AF114240 EMBL:AF114241 EMBL:AF114242
EMBL:AF114244 EMBL:AF114245 EMBL:AF114246 EMBL:AK010383
EMBL:AK084421 EMBL:AK132207 EMBL:BC023096 EMBL:AF071312
IPI:IPI00120513 IPI:IPI00480307 RefSeq:NP_034069.2 UniGene:Mm.3596
ProteinModelPortal:P61202 SMR:P61202 STRING:P61202
PhosphoSite:P61202 PaxDb:P61202 PRIDE:P61202
Ensembl:ENSMUST00000028635 Ensembl:ENSMUST00000110463 GeneID:12848
KEGG:mmu:12848 ChiTaRS:COPS2 NextBio:282396 Bgee:P61202
Genevestigator:P61202 GermOnline:ENSMUSG00000027206 Uniprot:P61202
Length = 443
Score = 145 (56.1 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 29/75 (38%), Positives = 45/75 (60%)
Query: 263 SELEDDTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMIL 322
S + DD ++ HI L N+ Q L ++I+PY+R+ + FI+K + +D VE L Q IL
Sbjct: 335 SNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCIL 394
Query: 323 DKKFHGILDQGEKVL 337
D HG +DQ ++L
Sbjct: 395 DNTIHGRIDQVNQLL 409
>RGD|628791 [details] [associations]
symbol:Cops2 "COP9 signalosome subunit 2" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IDA] [GO:0003714
"transcription corepressor activity" evidence=IEA;ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008180 "signalosome" evidence=IEA;ISO]
[GO:0008283 "cell proliferation" evidence=IEA;ISO] [GO:0010388
"cullin deneddylation" evidence=IEA;ISO] [GO:0030182 "neuron
differentiation" evidence=IDA] [GO:0035914 "skeletal muscle cell
differentiation" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA;ISO] InterPro:IPR000717
InterPro:IPR011990 Pfam:PF01399 SMART:SM00088 RGD:628791
GO:GO:0005634 GO:GO:0005737 GO:GO:0003714 GO:GO:0030182
GO:GO:0008283 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0000122
Gene3D:1.25.40.10 GO:GO:0008180 GO:GO:0010388 InterPro:IPR013143
SMART:SM00753 eggNOG:COG5159 HOGENOM:HOG000194333 KO:K12176
CTD:9318 HOVERGEN:HBG003924 OrthoDB:EOG43N7CN InterPro:IPR019280
Pfam:PF10075 EMBL:AB081072 EMBL:BC061864 IPI:IPI00193753
IPI:IPI00454366 RefSeq:NP_695209.1 UniGene:Rn.11556
ProteinModelPortal:P61203 SMR:P61203 STRING:P61203 PRIDE:P61203
GeneID:261736 KEGG:rno:261736 UCSC:RGD:628791 InParanoid:P61203
NextBio:624390 Genevestigator:P61203 GermOnline:ENSRNOG00000008744
Uniprot:P61203
Length = 443
Score = 145 (56.1 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 29/75 (38%), Positives = 45/75 (60%)
Query: 263 SELEDDTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMIL 322
S + DD ++ HI L N+ Q L ++I+PY+R+ + FI+K + +D VE L Q IL
Sbjct: 335 SNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCIL 394
Query: 323 DKKFHGILDQGEKVL 337
D HG +DQ ++L
Sbjct: 395 DNTIHGRIDQVNQLL 409
>UNIPROTKB|P61203 [details] [associations]
symbol:Cops2 "COP9 signalosome complex subunit 2"
species:10116 "Rattus norvegicus" [GO:0003714 "transcription
corepressor activity" evidence=IEA] [GO:0008180 "signalosome"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=IEA]
[GO:0010388 "cullin deneddylation" evidence=IEA] InterPro:IPR000717
InterPro:IPR011990 Pfam:PF01399 SMART:SM00088 RGD:628791
GO:GO:0005634 GO:GO:0005737 GO:GO:0003714 GO:GO:0030182
GO:GO:0008283 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0000122
Gene3D:1.25.40.10 GO:GO:0008180 GO:GO:0010388 InterPro:IPR013143
SMART:SM00753 eggNOG:COG5159 HOGENOM:HOG000194333 KO:K12176
CTD:9318 HOVERGEN:HBG003924 OrthoDB:EOG43N7CN InterPro:IPR019280
Pfam:PF10075 EMBL:AB081072 EMBL:BC061864 IPI:IPI00193753
IPI:IPI00454366 RefSeq:NP_695209.1 UniGene:Rn.11556
ProteinModelPortal:P61203 SMR:P61203 STRING:P61203 PRIDE:P61203
GeneID:261736 KEGG:rno:261736 UCSC:RGD:628791 InParanoid:P61203
NextBio:624390 Genevestigator:P61203 GermOnline:ENSRNOG00000008744
Uniprot:P61203
Length = 443
Score = 145 (56.1 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 29/75 (38%), Positives = 45/75 (60%)
Query: 263 SELEDDTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMIL 322
S + DD ++ HI L N+ Q L ++I+PY+R+ + FI+K + +D VE L Q IL
Sbjct: 335 SNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCIL 394
Query: 323 DKKFHGILDQGEKVL 337
D HG +DQ ++L
Sbjct: 395 DNTIHGRIDQVNQLL 409
>UNIPROTKB|G3X736 [details] [associations]
symbol:COPS2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0010388 "cullin deneddylation"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=IEA]
[GO:0008180 "signalosome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003714 "transcription corepressor activity"
evidence=IEA] InterPro:IPR000717 InterPro:IPR011990 Pfam:PF01399
SMART:SM00088 GO:GO:0005737 GO:GO:0003714 GO:GO:0045892
GO:GO:0008283 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:1.25.40.10 GO:GO:0008180 GO:GO:0010388 InterPro:IPR013143
SMART:SM00753 OMA:SNSEPDV GeneTree:ENSGT00530000063301
EMBL:DAAA02029106 UniGene:Bt.37059 ProteinModelPortal:G3X736
SMR:G3X736 PRIDE:G3X736 Ensembl:ENSBTAT00000017862 NextBio:20925241
Uniprot:G3X736
Length = 450
Score = 145 (56.1 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 29/75 (38%), Positives = 45/75 (60%)
Query: 263 SELEDDTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMIL 322
S + DD ++ HI L N+ Q L ++I+PY+R+ + FI+K + +D VE L Q IL
Sbjct: 342 SNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCIL 401
Query: 323 DKKFHGILDQGEKVL 337
D HG +DQ ++L
Sbjct: 402 DNTIHGRIDQVNQLL 416
>FB|FBgn0013746 [details] [associations]
symbol:alien "alien" species:7227 "Drosophila melanogaster"
[GO:0008231 "repressor ecdysone receptor complex" evidence=IPI]
[GO:0003714 "transcription corepressor activity" evidence=IDA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0035257 "nuclear hormone receptor binding"
evidence=IPI] [GO:0016922 "ligand-dependent nuclear receptor
binding" evidence=IPI] [GO:0042803 "protein homodimerization
activity" evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008180 "signalosome" evidence=NAS;IPI] [GO:0007165 "signal
transduction" evidence=ISS] [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006911 "phagocytosis, engulfment"
evidence=IMP] [GO:0050821 "protein stabilization" evidence=IMP]
[GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000717
InterPro:IPR011990 Pfam:PF01399 SMART:SM00088 GO:GO:0005737
GO:GO:0003714 GO:GO:0045892 GO:GO:0007095 GO:GO:0050821
GO:GO:0006911 EMBL:AE014134 GO:GO:0022008 GO:GO:0048477
Gene3D:1.10.10.10 InterPro:IPR011991 Gene3D:1.25.40.10
GO:GO:0008180 InterPro:IPR013143 SMART:SM00753 eggNOG:COG5159
KO:K12176 OMA:SNSEPDV GeneTree:ENSGT00530000063301 EMBL:AF129079
EMBL:AY069836 EMBL:AY118505 EMBL:U57758 RefSeq:NP_523517.1
RefSeq:NP_723438.1 UniGene:Dm.20642 ProteinModelPortal:Q94899
SMR:Q94899 DIP:DIP-19507N IntAct:Q94899 MINT:MINT-775221
STRING:Q94899 PaxDb:Q94899 PRIDE:Q94899 EnsemblMetazoa:FBtr0079780
EnsemblMetazoa:FBtr0079781 EnsemblMetazoa:FBtr0331452 GeneID:34225
KEGG:dme:Dmel_CG9556 CTD:34225 FlyBase:FBgn0013746
InParanoid:Q94899 OrthoDB:EOG4QNKBG PhylomeDB:Q94899
GenomeRNAi:34225 NextBio:787477 Bgee:Q94899 GermOnline:CG9556
GO:GO:0008231 Uniprot:Q94899
Length = 444
Score = 115 (45.5 bits), Expect = 6.9e-07, Sum P(3) = 6.9e-07
Identities = 26/80 (32%), Positives = 41/80 (51%)
Query: 258 VNQILSELEDDTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKL 317
+ Q S + D ++ HI L N+ Q L ++I PY + + FIA ++ ++ VE L
Sbjct: 331 LRQHRSNIMADQFIREHIEDLLRNIRTQVLIKLIRPYKNIAIPFIANALNIEPAEVESLL 390
Query: 318 SQMILDKKFHGILDQGEKVL 337
ILD G +DQ +VL
Sbjct: 391 VSCILDDTIKGRIDQVNQVL 410
Score = 61 (26.5 bits), Expect = 6.9e-07, Sum P(3) = 6.9e-07
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 206 GILHAADEQDFKTAFSYFYEAFEGFSTVDHNHAMMSLKYMLLSKIMLNT 254
G +H E +F+ A + F+EAF+ + LKY++L+ +++ +
Sbjct: 243 GKMHLR-EGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKS 290
Score = 44 (20.5 bits), Expect = 6.9e-07, Sum P(3) = 6.9e-07
Identities = 14/70 (20%), Positives = 32/70 (45%)
Query: 69 SQISKAKAAKLVRSLVDFFLDLETRTGME--VALCKECIEWAKEERRTFLRQSLEARLIA 126
S +++ + K + S++D+ + ++ + + AK +R F +L
Sbjct: 102 SAVTRNHSEKSINSILDYISTSKNMALLQNFYETTLDALRDAKNDRLWF---KTNTKLGK 158
Query: 127 LYFDTGEYTE 136
LYFD ++T+
Sbjct: 159 LYFDRSDFTK 168
>ZFIN|ZDB-GENE-040625-15 [details] [associations]
symbol:cops2 "COP9 constitutive photomorphogenic
homolog subunit 2 (Arabidopsis)" species:7955 "Danio rerio"
[GO:0008150 "biological_process" evidence=ND] [GO:0008180
"signalosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000717
InterPro:IPR011990 Pfam:PF01399 SMART:SM00088
ZFIN:ZDB-GENE-040625-15 GO:GO:0005737 Gene3D:1.10.10.10
InterPro:IPR011991 Gene3D:1.25.40.10 GO:GO:0008180
InterPro:IPR013143 SMART:SM00753 eggNOG:COG5159
HOGENOM:HOG000194333 KO:K12176 OMA:SNSEPDV
GeneTree:ENSGT00530000063301 EMBL:BC071320 IPI:IPI00488001
RefSeq:NP_001002055.1 UniGene:Dr.78251 ProteinModelPortal:Q6IQT4
STRING:Q6IQT4 PRIDE:Q6IQT4 Ensembl:ENSDART00000006124 GeneID:415145
KEGG:dre:415145 CTD:9318 HOVERGEN:HBG003924 InParanoid:Q6IQT4
OrthoDB:EOG43N7CN NextBio:20818820 ArrayExpress:Q6IQT4 Bgee:Q6IQT4
Uniprot:Q6IQT4
Length = 443
Score = 138 (53.6 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 263 SELEDDTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMIL 322
S + DD ++ HI L N+ Q L ++I+PY+R+ + FI+K + +D VE L Q IL
Sbjct: 335 SNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCIL 394
Query: 323 DKKFHGILDQGEKVL 337
D +G +DQ ++L
Sbjct: 395 DNTINGRIDQVNQLL 409
>UNIPROTKB|G5EHS2 [details] [associations]
symbol:MGCH7_ch7g1103 "COP9 signalosome complex subunit 2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000717 InterPro:IPR011990 Pfam:PF01399
SMART:SM00088 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:1.25.40.10 EMBL:CM000230 EMBL:CM001237 InterPro:IPR013143
SMART:SM00753 KO:K12176 RefSeq:XP_003720496.1
ProteinModelPortal:G5EHS2 EnsemblFungi:MGG_10325T0 GeneID:2681900
KEGG:mgr:MGG_10325 Uniprot:G5EHS2
Length = 522
Score = 96 (38.9 bits), Expect = 9.4e-06, Sum P(2) = 9.4e-06
Identities = 23/85 (27%), Positives = 44/85 (51%)
Query: 263 SELEDDTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMIL 322
++L D + +I + M + + R+I PY RV V +IA +++ E L +I+
Sbjct: 340 TDLLADPFIAENIDEVTRTMRTKAVQRLIAPYERVRVDWIAAQLRITEAEARDILGFLII 399
Query: 323 DKKFHGILDQGEKVLIVFEGAEIDK 347
D K G +DQ ++ + A++D+
Sbjct: 400 DGKVAGKIDQSRGLVEIESRADMDR 424
Score = 81 (33.6 bits), Expect = 9.4e-06, Sum P(2) = 9.4e-06
Identities = 20/70 (28%), Positives = 38/70 (54%)
Query: 195 PKMQAALDLQSGILHAADEQDFKTAFSYFYEAFEGFSTVDHNHAMMSLKYMLLSKIMLNT 254
PK+ + G +H A+E ++K A S F+E+F + + LKY+LL+ +++ +
Sbjct: 237 PKIMGIIRECGGKMHMAEE-NWKDAQSDFFESFRNYDEAGSLQRIQVLKYLLLTTMLMRS 295
Query: 255 PEDVNQILSE 264
D+N S+
Sbjct: 296 --DINPFDSQ 303
>DICTYBASE|DDB_G0289361 [details] [associations]
symbol:csn2 "proteasome component region PCI (PINT)
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0008180 "signalosome" evidence=IEA;ISS;IPI] [GO:0005515
"protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000717 InterPro:IPR011990 Pfam:PF01399 SMART:SM00088
dictyBase:DDB_G0289361 GO:GO:0005737 Gene3D:1.10.10.10
InterPro:IPR011991 GenomeReviews:CM000154_GR EMBL:AAFI02000139
Gene3D:1.25.40.10 GO:GO:0008180 InterPro:IPR013143 SMART:SM00753
eggNOG:COG5159 KO:K12176 OMA:SNSEPDV EMBL:DQ309430
RefSeq:XP_636285.1 ProteinModelPortal:Q54HL6 STRING:Q54HL6
EnsemblProtists:DDB0233100 GeneID:8627103 KEGG:ddi:DDB_G0289361
ProtClustDB:CLSZ2429788 Uniprot:Q54HL6
Length = 449
Score = 125 (49.1 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 30/95 (31%), Positives = 49/95 (51%)
Query: 267 DDTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKF 326
DD ++ +I L N+ Q L ++++PY+R+ + FI+K + + VE L +ILD K
Sbjct: 343 DDPFIRMYIEDLLRNIRTQVLLKLLKPYTRIRISFISKELNIPSSDVESLLVSLILDNKI 402
Query: 327 HGILDQGEKVLIVFEGAEIDKTYEKALETITSMGK 361
G +DQ + L E+D A TS+ K
Sbjct: 403 RGSIDQVNQQL------ELDTAKSSAYWKYTSIHK 431
>WB|WBGene00000814 [details] [associations]
symbol:csn-2 species:6239 "Caenorhabditis elegans"
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0018991
"oviposition" evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP]
InterPro:IPR000717 InterPro:IPR011990 Pfam:PF01399 SMART:SM00088
GO:GO:0009792 GO:GO:0005737 GO:GO:0018991 GO:GO:0040010
GO:GO:0030154 GO:GO:0048477 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0000910 Gene3D:1.25.40.10 GO:GO:0008180 InterPro:IPR013143
SMART:SM00753 eggNOG:COG5159 HOGENOM:HOG000194333 KO:K12176
OMA:SNSEPDV EMBL:FO080100 PIR:T25440 RefSeq:NP_491740.1
ProteinModelPortal:O01422 SMR:O01422 DIP:DIP-24665N IntAct:O01422
MINT:MINT-1040695 STRING:O01422 PaxDb:O01422 PRIDE:O01422
EnsemblMetazoa:B0025.2.1 EnsemblMetazoa:B0025.2.2
EnsemblMetazoa:B0025.2.3 GeneID:172278 KEGG:cel:CELE_B0025.2
UCSC:B0025.2.1 CTD:172278 WormBase:B0025.2
GeneTree:ENSGT00530000063301 InParanoid:O01422 NextBio:874805
Uniprot:O01422
Length = 495
Score = 96 (38.9 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 28/111 (25%), Positives = 55/111 (49%)
Query: 253 NTPEDVNQILSELED----DTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKL 308
N + QI++ +D D ++ H L +N+ Q L R+I PY+ V + ++++ +K+
Sbjct: 321 NDIQAFEQIMAAHQDSIMADPFIREHTEELMNNIRTQVLLRLIRPYTNVRISYLSQKLKV 380
Query: 309 DELAVEKKLSQMILDKKFHGILDQGEKVLIVFEGAEIDKTYEKALETITSM 359
+ K++ +++D ILD G + I E I+ K +TS+
Sbjct: 381 SQ----KEVIHLLVD----AILDDGLEAKINEESGMIEMPKNKKKMMVTSL 423
Score = 63 (27.2 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 16/59 (27%), Positives = 31/59 (52%)
Query: 206 GILHAADEQDFKTAFSYFYEAFEGFSTVDHNHAMMSLKYMLLSKIMLNTPEDVNQILSE 264
G +H D + F A + F+EAF+ + LKY++L+ +++ + D+N S+
Sbjct: 242 GKMHLRDGR-FLDAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLIKS--DINPFDSQ 297
>UNIPROTKB|O01422 [details] [associations]
symbol:csn-2 "COP9 signalosome complex subunit 2"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000717 InterPro:IPR011990 Pfam:PF01399
SMART:SM00088 GO:GO:0009792 GO:GO:0005737 GO:GO:0018991
GO:GO:0040010 GO:GO:0030154 GO:GO:0048477 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0000910 Gene3D:1.25.40.10 GO:GO:0008180
InterPro:IPR013143 SMART:SM00753 eggNOG:COG5159
HOGENOM:HOG000194333 KO:K12176 OMA:SNSEPDV EMBL:FO080100 PIR:T25440
RefSeq:NP_491740.1 ProteinModelPortal:O01422 SMR:O01422
DIP:DIP-24665N IntAct:O01422 MINT:MINT-1040695 STRING:O01422
PaxDb:O01422 PRIDE:O01422 EnsemblMetazoa:B0025.2.1
EnsemblMetazoa:B0025.2.2 EnsemblMetazoa:B0025.2.3 GeneID:172278
KEGG:cel:CELE_B0025.2 UCSC:B0025.2.1 CTD:172278 WormBase:B0025.2
GeneTree:ENSGT00530000063301 InParanoid:O01422 NextBio:874805
Uniprot:O01422
Length = 495
Score = 96 (38.9 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 28/111 (25%), Positives = 55/111 (49%)
Query: 253 NTPEDVNQILSELED----DTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKL 308
N + QI++ +D D ++ H L +N+ Q L R+I PY+ V + ++++ +K+
Sbjct: 321 NDIQAFEQIMAAHQDSIMADPFIREHTEELMNNIRTQVLLRLIRPYTNVRISYLSQKLKV 380
Query: 309 DELAVEKKLSQMILDKKFHGILDQGEKVLIVFEGAEIDKTYEKALETITSM 359
+ K++ +++D ILD G + I E I+ K +TS+
Sbjct: 381 SQ----KEVIHLLVD----AILDDGLEAKINEESGMIEMPKNKKKMMVTSL 423
Score = 63 (27.2 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 16/59 (27%), Positives = 31/59 (52%)
Query: 206 GILHAADEQDFKTAFSYFYEAFEGFSTVDHNHAMMSLKYMLLSKIMLNTPEDVNQILSE 264
G +H D + F A + F+EAF+ + LKY++L+ +++ + D+N S+
Sbjct: 242 GKMHLRDGR-FLDAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLIKS--DINPFDSQ 297
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.133 0.365 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 374 324 0.00086 116 3 11 22 0.40 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 37
No. of states in DFA: 603 (64 KB)
Total size of DFA: 200 KB (2113 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 26.67u 0.11s 26.78t Elapsed: 00:00:01
Total cpu time: 26.68u 0.11s 26.79t Elapsed: 00:00:01
Start: Thu Aug 15 17:09:43 2013 End: Thu Aug 15 17:09:44 2013