RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy4083
         (374 letters)



>gnl|CDD|227488 COG5159, RPN6, 26S proteasome regulatory complex component
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 421

 Score =  343 bits (882), Expect = e-116
 Identities = 165/378 (43%), Positives = 225/378 (59%), Gaps = 42/378 (11%)

Query: 37  KEQNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGM 96
           +E  +L+L + Y  +G    L + I  +R  +   +K K  K++R+L++ F         
Sbjct: 44  QEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIEKFPYSSDSLED 103

Query: 97  EVALCKECIEWAKEERRTFLRQSLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNL 156
           ++ +    IEWA  E+R FLR  LE +LI L + TG+Y++AL L + LL ELKK DDK  
Sbjct: 104 QIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKIN 163

Query: 157 LVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALDLQSGILHAADEQDF 216
           L+ V LLESK YH + N+S S+ASLT+ART ANS YCPP++QA LDL SGILH  D++D+
Sbjct: 164 LITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILH-CDDRDY 222

Query: 217 KTAFSYFYEAFEGFSTVD-HNHAMMSLKYMLLSKIMLNTPEDVNQILS------------ 263
           KTA SYF EA EGF+ +     A +SLKYMLLSKIMLN  E+V  +L             
Sbjct: 223 KTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRM 282

Query: 264 ----------------------------ELEDDTIVKAHIGTLYDNMLEQNLCRIIEPYS 295
                                       EL  D+ +++H+  LYD +LE+NL +IIEP+S
Sbjct: 283 IRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDSFIRSHLQYLYDVLLEKNLVKIIEPFS 342

Query: 296 RVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFEGAEIDKTYEKALET 355
            VE+  IA  I LD   VE KLSQMILDK F+G LDQG+  LIV+     D TY++ALE 
Sbjct: 343 VVEISHIADVIGLDTNQVEGKLSQMILDKIFYGTLDQGDGCLIVYGEPAQDNTYDEALEQ 402

Query: 356 ITSMGKVIDTLYQKAKKL 373
           + ++  V+D+LY+KA  L
Sbjct: 403 VEALDCVVDSLYEKASAL 420


>gnl|CDD|214803 smart00753, PAM, PCI/PINT associated module. 
          Length = 88

 Score = 70.3 bits (173), Expect = 2e-15
 Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 6/93 (6%)

Query: 274 HIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQG 333
            +  L   +   NL ++ EPYS + +  +AK + L    VEK +S+ I D +    +DQ 
Sbjct: 2   LVERLQRKIRLTNLLQLSEPYSSISLSDLAKLLGLSVPEVEKLVSKAIRDGEISAKIDQV 61

Query: 334 EKVLIVFEGAEIDKTYEKALETITSMGKVIDTL 366
             ++   E            E +    + +  L
Sbjct: 62  NGIVEFEEVDPRRS------EPLAQFAETLKKL 88


>gnl|CDD|214509 smart00088, PINT, motif in proteasome subunits, Int-6, Nip-1 and
           TRIP-15.  Also called the PCI (Proteasome, COP9,
           Initiation factor 3) domain. Unknown function.
          Length = 88

 Score = 70.3 bits (173), Expect = 2e-15
 Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 6/93 (6%)

Query: 274 HIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQG 333
            +  L   +   NL ++ EPYS + +  +AK + L    VEK +S+ I D +    +DQ 
Sbjct: 2   LVERLQRKIRLTNLLQLSEPYSSISLSDLAKLLGLSVPEVEKLVSKAIRDGEISAKIDQV 61

Query: 334 EKVLIVFEGAEIDKTYEKALETITSMGKVIDTL 366
             ++   E            E +    + +  L
Sbjct: 62  NGIVEFEEVDPRRS------EPLAQFAETLKKL 88


>gnl|CDD|216479 pfam01399, PCI, PCI domain.  This domain has also been called the
           PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15).
          Length = 100

 Score = 65.7 bits (161), Expect = 1e-13
 Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 3/97 (3%)

Query: 246 LLSKIMLNTPEDVNQILSELED---DTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFI 302
           LL         D  +IL++ ED   D  +   +  L   + E NL R+ +PYS + +  +
Sbjct: 4   LLRAFYSGDLSDFEEILADNEDELLDDGLAELLEDLRRKIRELNLRRLAKPYSSISLSDL 63

Query: 303 AKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIV 339
           AK + L    VEK LS++I D +  G +DQ   +++ 
Sbjct: 64  AKLLGLSVDEVEKILSKLIRDGRIRGKIDQVNGIVVF 100


>gnl|CDD|234936 PRK01293, PRK01293, phosphoribosyl-dephospho-CoA transferase;
           Provisional.
          Length = 207

 Score = 33.0 bits (76), Expect = 0.15
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 17/73 (23%)

Query: 60  LIKKTRPFLSQISKAKAAKLVRSL------VDFFLDLETRTGMEVALCKECIEWAKEERR 113
           LI+  +P     ++ +A +L++ L      VD  L LET  G   AL     EWA++  R
Sbjct: 138 LIRAPQPL----ARDQARELLQLLDQAPCRVD--LQLETPAG-GFAL----REWARDGGR 186

Query: 114 TFLRQSLEARLIA 126
             L+ +   RL+A
Sbjct: 187 VLLKTAHGPRLVA 199


>gnl|CDD|236760 PRK10792, PRK10792, bifunctional 5,10-methylene-tetrahydrofolate
           dehydrogenase/ 5,10-methylene-tetrahydrofolate
           cyclohydrolase; Provisional.
          Length = 285

 Score = 33.0 bits (76), Expect = 0.22
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 4/39 (10%)

Query: 298 EVGFIAKSIKLDELAVEKKLSQMI----LDKKFHGILDQ 332
           EVGF+++S  L E   E +L  +I     D    GIL Q
Sbjct: 60  EVGFVSRSYDLPETTSEAELLALIDELNADPTIDGILVQ 98


>gnl|CDD|236360 PRK08983, fliN, flagellar motor switch protein; Validated.
          Length = 127

 Score = 30.9 bits (70), Expect = 0.44
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 9/55 (16%)

Query: 44 LGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLETRTGMEV 98
          + E+  +E  A EL EL+  + P    I++ +A KL     D  LD+     MEV
Sbjct: 14 MAEQALEEALAAELDELVDDSAP----ITEDEARKL-----DTILDIPVTISMEV 59


>gnl|CDD|198111 smart01043, BTAD, Bacterial transcriptional activator domain.
           Found in the DNRI/REDD/AFSR family of regulators. This
           region of AFSR along with the C terminal region is
           capable of independently directing actinorhodin
           production. This family contains TPR repeats.
          Length = 145

 Score = 30.3 bits (69), Expect = 0.77
 Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 2/42 (4%)

Query: 106 EWAKEERRTFLRQSLEA--RLIALYFDTGEYTEALKLSSSLL 145
           +WA+ ER       LEA   L       G + EAL L   LL
Sbjct: 47  DWAEAERERLRELRLEALEALAEALLALGRHEEALALLERLL 88


>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein,
           HlyD family.  Type I secretion is an ABC transport
           process that exports proteins, without cleavage of any
           signal sequence, from the cytosol to extracellular
           medium across both inner and outer membranes. The
           secretion signal is found in the C-terminus of the
           transported protein. This model represents the adaptor
           protein between the ATP-binding cassette (ABC) protein
           of the inner membrane and the outer membrane protein,
           and is called the membrane fusion protein. This model
           selects a subfamily closely related to HlyD; it is
           defined narrowly and excludes, for example, colicin V
           secretion protein CvaA and multidrug efflux proteins
           [Protein fate, Protein and peptide secretion and
           trafficking].
          Length = 423

 Score = 31.1 bits (71), Expect = 0.83
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 2/77 (2%)

Query: 117 RQSLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLL--VEVLLLESKTYHALSNL 174
            + LEA L  L        + L++ S  L+  +KL +K L+  +E+L LE +   A   L
Sbjct: 153 IKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLELLELERERAEAQGEL 212

Query: 175 STSRASLTSARTTANSI 191
               A L   +   + +
Sbjct: 213 GRLEAELEVLKRQIDEL 229


>gnl|CDD|234298 TIGR03659, IsdE, heme ABC transporter, heme-binding protein isdE.
           This family of ABC substrate-binding proteins is
           observed primarily in close proximity with proteins
           localized to the cell wall and bearing the NEAT (NEAr
           Transporter, pfam05031) heme-binding domain. IsdE has
           been shown to bind heme and is involved in the process
           of scavenging heme for the purpose of obtaining iron.
          Length = 289

 Score = 29.9 bits (68), Expect = 2.0
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 34  VKAKEQNILQLGEKYKQEGKAIEL-AELIKKTRPFLSQISKAKAAK 78
           V   +++I +LGEKY +E +A +L  E+ +K      ++   K  K
Sbjct: 124 VDGMKKSITELGEKYGREEQAEKLVKEINEKEAEVKKKVKGKKKPK 169


>gnl|CDD|239318 cd03020, DsbA_DsbC_DsbG, DsbA family, DsbC and DsbG subfamily;
           V-shaped homodimeric proteins containing a redox active
           CXXC motif imbedded in a TRX fold. They function as
           protein disulfide isomerases and chaperones in the
           bacterial periplasm to correct non-native disulfide
           bonds formed by DsbA and prevent aggregation of
           incorrectly folded proteins. DsbC and DsbG are kept in
           their reduced state by the cytoplasmic membrane protein
           DsbD, which utilizes the TRX/TRX reductase system in the
           cytosol as a source of reducing equivalents. DsbG differ
           from DsbC in that it has a more limited substrate
           specificity, and it may preferentially act later in the
           folding process to catalyze disulfide rearrangements in
           folded or partially folded proteins. Also included in
           the alignment is the predicted protein TrbB, whose gene
           was sequenced from the enterohemorrhagic E. coli type IV
           pilus gene cluster, which is required for efficient
           plasmid transfer.
          Length = 197

 Score = 29.2 bits (66), Expect = 2.3
 Identities = 18/115 (15%), Positives = 33/115 (28%), Gaps = 33/115 (28%)

Query: 107 WAKEERRTFLRQSLEARLIALYFDTGEYTEALKLSSS-------------------LLKE 147
           +  + R+  L ++  A+L A+        +A+                        L KE
Sbjct: 39  YDAKGRKDDLTEARLAQLNAIDLSALPLDDAIVYGKGNGKRVVYVFTDPDCPYCRKLEKE 98

Query: 148 LKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALD 202
           LK   D  + V +  +                 L  +   A +I+C      A  
Sbjct: 99  LKPNAD-GVTVRIFPV-------------PILGLPDSTAKAAAIWCAKDRAKAWT 139


>gnl|CDD|212566 cd11684, DHR2_DOCK, Dock Homology Region 2, a GEF domain, of
           Dedicator of Cytokinesis proteins.  DOCK proteins
           comprise a family of atypical guanine nucleotide
           exchange factors (GEFs) that lack the conventional Dbl
           homology (DH) domain. As GEFs, they activate the small
           GTPases Rac and Cdc42 by exchanging bound GDP for free
           GTP. They are also called the CZH (CED-5, Dock180, and
           MBC-zizimin homology) family, after the first family
           members identified. Dock180 was first isolated as a
           binding partner for the adaptor protein Crk. The
           Caenorhabditis elegans protein, Ced-5, is essential for
           cell migration and phagocytosis, while the Drosophila
           ortholog, Myoblast city (MBC), is necessary for myoblast
           fusion and dorsal closure. DOCKs are divided into four
           classes (A-D) based on sequence similarity and domain
           architecture: class A includes Dock1 (or Dock180), 2 and
           5; class B includes Dock3 and 4; class C includes Dock6,
           7, and 8; and class D includes Dock9, 10 and 11. All
           DOCKs contain two homology domains: the DHR-1 (Dock
           homology region-1), also called CZH1, and DHR-2 (also
           called CZH2 or Docker). This alignment model represents
           the DHR-2 domain of DOCK proteins, which contains the
           catalytic GEF activity for Rac and/or Cdc42.
          Length = 392

 Score = 29.6 bits (67), Expect = 3.1
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 7/73 (9%)

Query: 108 AKEERRTFLRQSLEARLIALY------FDTGEYTE-ALKLSSSLLKELKKLDDKNLLVEV 160
           A  E  +F  Q+   R  ALY      FD G+  E A+ L   L+ + +   D   L EV
Sbjct: 44  ALAESLSFPEQTSFERKEALYKKAIDLFDKGKAWEFAIALYKELIPQYENNFDYAKLSEV 103

Query: 161 LLLESKTYHALSN 173
               +K Y  ++ 
Sbjct: 104 HRKIAKLYEKIAE 116


>gnl|CDD|226407 COG3890, ERG8, Phosphomevalonate kinase [Lipid metabolism].
          Length = 337

 Score = 29.1 bits (65), Expect = 4.1
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 142 SSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAAL 201
           S L +ELK  D+ N  V + L++     + S     R SL        +   P K  AAL
Sbjct: 219 SILPEELKCNDEMNSRV-LNLIKLSLDESNSKSKAIRRSLRRITEEGLADIEPIKQTAAL 277

Query: 202 D 202
           D
Sbjct: 278 D 278


>gnl|CDD|185657 PTZ00479, PTZ00479, RAP Superfamily; Provisional.
          Length = 435

 Score = 29.0 bits (65), Expect = 4.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 128 YFDTGEYTEALKLSSSLLKEL 148
           Y  T EYTE++KL   +L  L
Sbjct: 342 YTSTNEYTESVKLQHRILSNL 362


>gnl|CDD|222317 pfam13684, Dak1_2, Dihydroxyacetone kinase family.  This is the
           kinase domain of the dihydroxyacetone kinase family.
          Length = 309

 Score = 28.7 bits (65), Expect = 5.1
 Identities = 22/88 (25%), Positives = 30/88 (34%), Gaps = 34/88 (38%)

Query: 250 IMLNTPEDVNQILSELE----------DDTIVKAHI---------------GTLY----D 280
           I L+   D  ++ + LE          DD IVK H+               G L     D
Sbjct: 10  IKLDKDFDEEELRAFLEELGDSLVVVGDDDIVKVHVHTNDPGAVLEKALKYGELSKIKID 69

Query: 281 NMLEQ---NLCRIIEPYS--RVEVGFIA 303
           NM EQ    L +  E       + G +A
Sbjct: 70  NMREQHEEILEKEEEDEPKELKDYGVVA 97


>gnl|CDD|240730 cd12284, RRM2_RBM23_RBM39, RNA recognition motif 2 in vertebrate
           RNA-binding protein RBM23, RBM39 and similar proteins.
           This subfamily corresponds to the RRM2 of RBM39 (also
           termed HCC1), a nuclear autoantigen that contains an
           N-terminal arginine/serine rich (RS) motif and three RNA
           recognition motifs (RRMs), also termed RBDs (RNA binding
           domains) or RNPs (ribonucleoprotein domains). An
           octapeptide sequence called the RS-ERK motif is repeated
           six times in the RS region of RBM39. Although the
           cellular function of RBM23 remains unclear, it shows
           high sequence homology to RBM39 and contains two RRMs.
           It may possibly function as a pre-mRNA splicing factor.
           .
          Length = 73

 Score = 26.5 bits (59), Expect = 5.3
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 274 HIGTLYDNMLEQNLCRIIEPYSRVE 298
           ++G L+ N+ E +L  I EP+  +E
Sbjct: 2   YVGNLHFNITEDDLRGIFEPFGEIE 26


>gnl|CDD|237634 PRK14179, PRK14179, bifunctional 5,10-methylene-tetrahydrofolate
           dehydrogenase/ 5,10-methylene-tetrahydrofolate
           cyclohydrolase; Provisional.
          Length = 284

 Score = 28.6 bits (64), Expect = 5.6
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 4/42 (9%)

Query: 295 SRVEVGFIAKSIKLDELAVEKKLSQMI----LDKKFHGILDQ 332
           S +  GF ++ ++L E   +++L  +I     D  +HGIL Q
Sbjct: 56  SALAAGFKSEVVRLPETISQEELLDLIERYNQDPTWHGILVQ 97


>gnl|CDD|188455 TIGR03940, PGA_PgaD, poly-beta-1,6-N-acetyl-D-glucosamine
           biosynthesis protein PgaD.  Members of this protein
           family are PgaD, essential to the production of
           poly-beta-1,6-N-acetyl-D-glucosamine (PGA). This
           cytoplasmic membrane protein appears to be an auxiliary
           subunit to the PGA synthase, PgaC (TIGR03937) [Cell
           envelope, Biosynthesis and degradation of surface
           polysaccharides and lipopolysaccharides].
          Length = 141

 Score = 27.7 bits (62), Expect = 5.6
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 105 IEWAKEERRTFLRQSLEARLIALYFDTGEYTEALKLSSSLLKELKK 150
           + WA   R  F+ +    R  AL  D  EY     LS +LL +L+ 
Sbjct: 80  LLWAWYNRLRFVGEERRTRPPALDED--EYARYFGLSETLLAQLRT 123


>gnl|CDD|233496 TIGR01622, SF-CC1, splicing factor, CC1-like family.  This model
           represents a subfamily of RNA splicing factors including
           the Pad-1 protein (N. crassa), CAPER (M. musculus) and
           CC1.3 (H.sapiens). These proteins are characterized by
           an N-terminal arginine-rich, low complexity domain
           followed by three (or in the case of 4 H. sapiens
           paralogs, two) RNA recognition domains (rrm: pfam00706).
           These splicing factors are closely related to the U2AF
           splicing factor family (TIGR01642). A homologous gene
           from Plasmodium falciparum was identified in the course
           of the analysis of that genome at TIGR and was included
           in the seed.
          Length = 457

 Score = 28.7 bits (64), Expect = 6.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 272 KAHIGTLYDNMLEQNLCRIIEPYSRVE 298
           K ++G L+ N+ EQ L +I EP+  +E
Sbjct: 188 KLYVGNLHFNITEQELRQIFEPFGDIE 214


>gnl|CDD|237498 PRK13768, PRK13768, GTPase; Provisional.
          Length = 253

 Score = 27.9 bits (63), Expect = 7.4
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 247 LSKIMLNTPEDVNQILSELEDDTIVKAHIGTLYDNM--LEQNLCRIIE 292
           L+K  L + E++ +IL  LED   +   +         L   L R +E
Sbjct: 169 LNKADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALE 216


>gnl|CDD|220447 pfam09861, DUF2088, Domain of unknown function (DUF2088).  This
           domain, found in various hypothetical prokaryotic
           proteins, has no known function.
          Length = 203

 Score = 27.5 bits (62), Expect = 8.6
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 7/57 (12%)

Query: 284 EQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVF 340
           ++NL  ++EP            +  +E A+ + L   I  K    ++  GEKV+IV 
Sbjct: 12  DENLLGVLEPKE-------VPPVPDEEEAIREALENPIGSKPLDELVKPGEKVVIVV 61


>gnl|CDD|238560 cd01140, FatB, Siderophore binding protein FatB.  These proteins
           have been shown to function as ABC-type initial
           receptors in the siderophore-mediated iron uptake in
           some eubacterial species.  They belong to the TroA
           superfamily of periplasmic metal binding proteins that
           share a distinct fold and ligand binding mechanism. A
           typical TroA protein is comprised of two globular
           subdomains connected by a single helix and can bind
           their ligands in the cleft between these domains.
          Length = 270

 Score = 28.0 bits (63), Expect = 8.7
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 9/49 (18%)

Query: 29  NHDEEVKAKEQNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAA 77
           N+ E VK   QNI  LG+ + +E +A EL   I         I++AK+A
Sbjct: 104 NYLESVK---QNIETLGKIFGKEEEAKELVAEIDA------SIAEAKSA 143


>gnl|CDD|212505 cd11646, Precorrin_3B_C17_MT, Precorrin-3B C(17)-methyltransferase
           (CobJ/CbiH).  Precorrin-3B C(17)-methyltransferase
           participates in the pathway toward the biosynthesis of
           cobalamin (vitamin B12). There are two distinct
           cobalamin biosynthetic pathways. The aerobic pathway
           requires oxygen, and cobalt is inserted late in the
           pathway; the anaerobic pathway does not require oxygen,
           and cobalt insertion is the first committed step towards
           cobalamin synthesis. This model includes CobJ of the
           aerobic pathway and CbiH of the anaerobic pathway, both
           as stand-alone enzymes and when CobJ forms part of a
           bifunctional enzyme. In the aerobic pathway, once CobG
           has generated precorrin-3b, CobJ catalyzes the
           methylation of precorrin-3b at C-17 to form precorrin-4
           (the extruded methylated C-20 fragment is left attached
           as an acyl group at C-1). In the corresponding anaerobic
           pathway, CbiH carries out this ring contraction, using
           cobalt-precorrin-3b as a substrate to generate a
           tetramethylated delta-lactone.
          Length = 240

 Score = 27.8 bits (63), Expect = 8.7
 Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 6/40 (15%)

Query: 78  KLVRSLVDFFLDLET-RTGM--EVALCKECIEWAKEERRT 114
            L+  L++     E   +GM  EV   +  +E A+E +  
Sbjct: 38  DLIEDLLE---GKEVISSGMGEEVERARLAVELAREGKTV 74


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.316    0.131    0.351 

Gapped
Lambda     K      H
   0.267   0.0733    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,489,661
Number of extensions: 1808676
Number of successful extensions: 2170
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2166
Number of HSP's successfully gapped: 58
Length of query: 374
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 276
Effective length of database: 6,590,910
Effective search space: 1819091160
Effective search space used: 1819091160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.9 bits)