RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4083
(374 letters)
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha
solenoid, regulatory PART LID, hydrolase, protein
binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Length = 394
Score = 284 bits (727), Expect = 2e-93
Identities = 267/388 (68%), Positives = 300/388 (77%), Gaps = 39/388 (10%)
Query: 26 EEENHDEEVKAKEQNILQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVD 85
EN +E ++ KEQ ILQ GE YKQEGKA ELA+LIK TRPFLS ISKAKAAKLVRSLVD
Sbjct: 7 GAENDEERIRIKEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVD 66
Query: 86 FFLDLETRTGMEVALCKECIEWAKEERRTFLRQSLEARLIALYFDTGEYTEALKLSSSLL 145
FLD++ TG+EV LCK+CIEWAK+E+RTFLRQSLEARLIALYFDT YTEAL L + LL
Sbjct: 67 MFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLL 126
Query: 146 KELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALDLQS 205
+ELKKLDDKNLLVEV LLESKTYHALSNL +RA+LTSARTTAN+IYCPPK+Q ALDLQS
Sbjct: 127 RELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQS 186
Query: 206 GILHAADEQDFKTAFSYFYEAFEGFSTVDHNHAMMSLKYMLLSKIMLNTPEDVNQILS-- 263
GILHAADE+DFKTAFSYFYEAFEGF +VD A+ SLKYMLL KIML +DVNQ++S
Sbjct: 187 GILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGK 246
Query: 264 -------------------------------------ELEDDTIVKAHIGTLYDNMLEQN 286
EL +D IV+AH+GTLYD MLEQN
Sbjct: 247 LAITYSGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQN 306
Query: 287 LCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVLIVFEGAEID 346
LCRIIEPYSRV+V +A+SI+L VEKKLSQMILDKKF GILDQGE VLIVFE +D
Sbjct: 307 LCRIIEPYSRVQVAHVAESIQLPMPQVEKKLSQMILDKKFSGILDQGEGVLIVFEETPVD 366
Query: 347 KTYEKALETITSMGKVIDTLYQKAKKLT 374
KTYE+ LETI SMGKV+DTLYQKAKKL+
Sbjct: 367 KTYERVLETIQSMGKVVDTLYQKAKKLS 394
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Length = 84
Score = 59.8 bits (145), Expect = 9e-12
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 272 KAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILD 331
L ++E NL + Y+ + + +++ EK SQMI + + +G +D
Sbjct: 6 SGGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFID 65
Query: 332 QGEKVLIVFEGAE 344
Q + + + FE E
Sbjct: 66 QIDGI-VHFETRE 77
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.8 bits (105), Expect = 4e-05
Identities = 62/447 (13%), Positives = 119/447 (26%), Gaps = 164/447 (36%)
Query: 31 DEEVKAK-EQNI--LQLGEKYKQEGKAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFF 87
+V+ K + I L L E +++ + L QI S D
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPE-------TVLEMLQKLLYQIDPNWT-----SRSDHS 220
Query: 88 LDLETRTGMEVALCKECIEWAKEERRTFLRQSLEAR-LIAL----------YFD------ 130
+++ R I + E R L+ L+ L F+
Sbjct: 221 SNIKLR-----------IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269
Query: 131 --TGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSN-LSTSRASLTSARTT 187
T LS++ + LD + L + L L L
Sbjct: 270 LTTRFKQVTDFLSAATTTHI-SLDH----HSMTLTPDEVKSLLLKYLDCRPQDL------ 318
Query: 188 ANSIYCPPKMQAALDLQSGILHAADEQDFKTAFSYF----YEAFEGFSTVDHNHAMMSLK 243
P ++ + I+ A +D + + + + ++ SL
Sbjct: 319 ------PREVLTTNPRRLSII-AESIRDGLATWDNWKHVNCDKLT--TIIE-----SSLN 364
Query: 244 ----------YMLLS------KIMLNT---------PEDVNQILSELEDDTIVKAHI--G 276
+ LS I DV ++++L ++V+
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424
Query: 277 TLYDNMLEQNLC-----------RIIEPYSRVE-------------------VGFIAKSI 306
T+ + L I++ Y+ + +G K+I
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484
Query: 307 KLDELAVEKKLSQMILDKKF---------------HGILDQGEKVLIVFEG-----AEID 346
+ E + LD +F IL+ L + + D
Sbjct: 485 EHPERMTL--FRMVFLDFRFLEQKIRHDSTAWNASGSILN----TLQQLKFYKPYICDND 538
Query: 347 KTYEKALETITSMGKVIDTLYQKAKKL 373
YE+ + I +D L + + L
Sbjct: 539 PKYERLVNAI------LDFLPKIEENL 559
Score = 33.7 bits (76), Expect = 0.12
Identities = 22/129 (17%), Positives = 43/129 (33%), Gaps = 40/129 (31%)
Query: 235 HNHAM------MSLKYMLLSKIMLNTPEDVNQILSELEDDTIVKAHIGTLYDNMLEQNLC 288
H+H M +Y ILS ED V +D C
Sbjct: 3 HHHHMDFETGEHQYQY--------------KDILSVFEDA-FVDN-----FD-------C 35
Query: 289 RIIEPYSRVEVGFIAKSIKLDELAVEK-KLSQMILDKKFHGILDQGEKVLIVFEGAEIDK 347
+ ++ + I ++D + + K +S + F +L + E+++ F +
Sbjct: 36 KDVQDMPKS----ILSKEEIDHIIMSKDAVSG--TLRLFWTLLSKQEEMVQKFVEEVLRI 89
Query: 348 TYEKALETI 356
Y+ + I
Sbjct: 90 NYKFLMSPI 98
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 7e-05
Identities = 33/246 (13%), Positives = 71/246 (28%), Gaps = 79/246 (32%)
Query: 118 QSLEARLIALYFDTG--EYTEALKLSSSLLKELKKL---DDKNLLVEVLLLESKTYH--- 169
+ + A+ F+T + K+ + + +K LL S T
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLL-------SATQFTQP 1734
Query: 170 ALSNLSTSRASLTSARTTAN----------SI--YCPPKMQAALDLQSGILHAADEQDFK 217
AL +A+ ++ S+ Y AAL + ++ +
Sbjct: 1735 AL--TLMEKAAFEDLKSKGLIPADATFAGHSLGEY------AALASLADVM------SIE 1780
Query: 218 TAFS-------YFYEAFEGFSTVDHNHAMMSLKYMLLSKIMLNTPEDVNQILSELEDDT- 269
+ A N+ M+++ ++ + E + ++ + T
Sbjct: 1781 SLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASF--SQEALQYVVERVGKRTG 1838
Query: 270 --------------IVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFI-AKSIKLDELAVE 314
V A G L L+ + ++ FI + I + EL
Sbjct: 1839 WLVEIVNYNVENQQYVAA--GDLRA--LDT-VTNVLN--------FIKLQKIDIIELQKS 1885
Query: 315 KKLSQM 320
L ++
Sbjct: 1886 LSLEEV 1891
Score = 42.3 bits (99), Expect = 2e-04
Identities = 58/371 (15%), Positives = 108/371 (29%), Gaps = 127/371 (34%)
Query: 56 ELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDLET--RTGMEVALCKECIEWAKEERR 113
EL +L + + + K +A+ + L+ LD E G+ + +EW +
Sbjct: 172 ELRDLYQTYHVLVGDLIKF-SAETLSELIRTTLDAEKVFTQGLNI------LEWLENPSN 224
Query: 114 T----FLRQ---SLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESK 166
T +L S LI + Y KL EL+
Sbjct: 225 TPDKDYLLSIPISCP--LIGVI-QLAHYVVTAKLLGFTPGELRSY--------------- 266
Query: 167 TYHALSNLSTSRASLTSARTTANSIYCPPKMQAALDLQSGILHAADEQDFKTAFS----- 221
L + L +A A + F +
Sbjct: 267 ----LKGATGHSQGLVTAVAIA--------------------ETDSWESFFVSVRKAITV 302
Query: 222 YFY------EAFEGFS--------TVDHNHAMMSLKYML----LSKIMLNTP-EDVNQIL 262
F+ EA+ S ++++N + S ML L++ + N L
Sbjct: 303 LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS--PMLSISNLTQEQVQDYVNKTNSHL 360
Query: 263 SELE----------DDTIVKAHIGTLY-----------DNMLEQNLCRIIEPYS----RV 297
+ + +V +LY + L+Q+ RI P+S +
Sbjct: 361 PAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS--RI--PFSERKLKF 416
Query: 298 EVGF--IAK---SIKLDELAVEKKLSQMILDKKFHGILDQGEKVLI-VF---EGAEIDKT 348
F +A S L A + + D + + + + I V+ +G+++
Sbjct: 417 SNRFLPVASPFHSHLLVP-ASDL----INKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVL 471
Query: 349 YEKALETITSM 359
E I
Sbjct: 472 SGSISERIVDC 482
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export,
transcription; 2.12A {Homo sapiens}
Length = 203
Score = 34.9 bits (80), Expect = 0.020
Identities = 29/173 (16%), Positives = 55/173 (31%), Gaps = 42/173 (24%)
Query: 206 GILHAADEQDFKTAFSYFYEAFEGFSTVDHNHAMMSLKYMLLSKIMLNTPED-------- 257
G D DFK A Y AFE + M L Y+L K++L
Sbjct: 21 GRKAMFDS-DFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPTVELLKKYH 79
Query: 258 ------------------VNQILSELEDDTIVKAHIGTLYDNMLEQNLCR-------IIE 292
+++ L++ E ++ I + L+ R ++
Sbjct: 80 LMQFAEVTRAVSEGNLLLLHEALAKHE-AFFIRCGIFLIL-EKLKIITYRNLFKKVYLLL 137
Query: 293 PYSRVEVGFIAKSIKL------DELAVEKKLSQMILDKKFHGILDQGEKVLIV 339
++ + ++K D V+ L+ +I G + + L+V
Sbjct: 138 KTHQLSLDAFLVALKFMQVEDVDIDEVQCILANLIYMGHVKGYISHQHQKLVV 190
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein
superhelix, transc activator; 1.45A {Escherichia coli}
SCOP: a.118.8.2
Length = 373
Score = 33.4 bits (76), Expect = 0.097
Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 1/86 (1%)
Query: 106 EWAKEERRTFLRQSLEARLIA-LYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLE 164
AK E + R IA GE+ A + L + + L + L LLL
Sbjct: 240 HTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLL 299
Query: 165 SKTYHALSNLSTSRASLTSARTTANS 190
++ Y S ++ L A AN
Sbjct: 300 NQLYWQAGRKSDAQRVLLDALKLANR 325
Score = 33.0 bits (75), Expect = 0.16
Identities = 27/123 (21%), Positives = 46/123 (37%), Gaps = 7/123 (5%)
Query: 110 EERRTFLRQSLEARLIAL----YFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLES 165
E + ++ A AL + G EA +L+ L+EL + +V +
Sbjct: 2 HEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIV-ATSVLG 60
Query: 166 KTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYE 225
+ H L+ S A + A +L QS IL A + +TA+ +
Sbjct: 61 EVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA--QGFLQTAWETQEK 118
Query: 226 AFE 228
AF+
Sbjct: 119 AFQ 121
Score = 31.1 bits (70), Expect = 0.55
Identities = 25/157 (15%), Positives = 52/157 (33%), Gaps = 7/157 (4%)
Query: 98 VALCKECIEWAKEERRTFLRQSLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLL 157
L K +E + R + L + GE T +L L + ++ D +
Sbjct: 34 ERLAKLALEELPPGW-FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 92
Query: 158 VEVLLLESKTYHALSNLSTSRASLTSARTTA--NSIYCPPKMQAALDLQSGILHAADEQD 215
+ L+ +S+ A L T+ + A + P + + +++ +L A
Sbjct: 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA--R 150
Query: 216 FKTAFSYFYEAFEGFSTVDHNHAMMSLKYMLLSKIML 252
A + E S+ + +L + L
Sbjct: 151 LDEAEASARSGIEVLSSYQPQQQLQ--CLAMLIQCSL 185
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate
cyclohydrolase...; THF, bifunctional, oxidoreductase;
HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2
PDB: 1dia_A* 1dib_A* 1dig_A*
Length = 301
Score = 31.0 bits (71), Expect = 0.60
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 298 EVGFIAKSIKLDELAVEKKLSQMIL----DKKFHGILDQ 332
E+G A IKL E ++ + I D HG L Q
Sbjct: 62 EIGIKATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQ 100
>4ayb_B DNA-directed RNA polymerase; transferase, multi-subunit,
transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_B
2y0s_B 2waq_B 4b1o_B 4b1p_R 2pmz_B 3hkz_B
Length = 1131
Score = 31.0 bits (70), Expect = 0.69
Identities = 8/63 (12%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 254 TPEDVNQILSE-LEDDTIVKAHIGTLYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELA 312
+ ++ +++ + +V+ H+ + Y++ + L II+ + ++L ++
Sbjct: 9 SIDERWKVIEAYFKSKGLVRQHLDS-YNDFVRNKLQEIIDEQGEIPTEIPGLKVRLGKIR 67
Query: 313 VEK 315
+ K
Sbjct: 68 IGK 70
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase,
hydrolase, leishmaniasis; 2.70A {Leishmania major}
Length = 300
Score = 30.2 bits (69), Expect = 1.0
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 298 EVGFIAKSIKLDELAVEKKLSQMI----LDKKFHGILDQ 332
EVG + +++L E ++ L + D HGI+ Q
Sbjct: 64 EVGMASFNVELPEDISQEVLEVNVEKLNNDPNCHGIIVQ 102
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 30.2 bits (68), Expect = 1.1
Identities = 26/173 (15%), Positives = 56/173 (32%), Gaps = 3/173 (1%)
Query: 124 LIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTS 183
L +Y TG+Y A L + + + L L+ AL+ L +
Sbjct: 123 LAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKD 182
Query: 184 ARTTANSIYCPP--KMQAALDLQSGILHAADEQDFKTAFSYFYEAFEGFSTVDHNHAMMS 241
+ + K++A++ G ++ F A + EA + +
Sbjct: 183 EKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN-FDRAKECYKEALMVDAKCYEAFDQLV 241
Query: 242 LKYMLLSKIMLNTPEDVNQILSELEDDTIVKAHIGTLYDNMLEQNLCRIIEPY 294
++L + + +N ED +++ + ++ R E Y
Sbjct: 242 SNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY 294
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A
{Pseudomonas aeruginosa PAO1}
Length = 286
Score = 29.7 bits (68), Expect = 1.2
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 298 EVGFIAKSIKLDELAVEKKLSQMI----LDKKFHGILDQ 332
EVGF++++ L + L +I D GIL Q
Sbjct: 62 EVGFLSQAYDLPAETSQDDLLALIDRLNDDPAIDGILVQ 100
>3l07_A Bifunctional protein fold; structural genomics, IDP01849,
methylenetetrahydrofolate dehydrogenase; 1.88A
{Francisella tularensis}
Length = 285
Score = 29.8 bits (68), Expect = 1.3
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 298 EVGFIAKSIKLDELAVEKKLSQMI----LDKKFHGILDQ 332
+VG ++ I L E E +L ++I D H IL Q
Sbjct: 61 QVGIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQ 99
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase,
cyclcohydrolase, channeling, oxidoreductase,hydrolase;
2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Length = 288
Score = 29.8 bits (68), Expect = 1.4
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 298 EVGFIAKSIKLDELAVEKKLSQMI----LDKKFHGILDQ 332
EVGF+++S L E E +L ++I D GIL Q
Sbjct: 60 EVGFVSRSYDLPETTSEAELLELIDTLNADNTIDGILVQ 98
>3p2o_A Bifunctional protein fold; structural genomics, center for
structural genomics of infec diseases, csgid,
alpha-beta-alpha sandwich; HET: NAD; 2.23A
{Campylobacter jejuni subsp}
Length = 285
Score = 29.8 bits (68), Expect = 1.4
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 298 EVGFIAKSIKLDELAVEKKLSQMI----LDKKFHGILDQ 332
E G + L+E + +L +I D HGIL Q
Sbjct: 60 ECGIKSLVYHLNENITQNELLALINTLNHDDSVHGILVQ 98
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.0 bits (64), Expect = 1.9
Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 12/63 (19%)
Query: 25 YEEENHDEEV--KAKEQNILQLGEKYKQEGKAIELAELIKKTRPFLS--------QISKA 74
+ + E K +E+ +L E + E +K + L Q+ K
Sbjct: 77 ADRLTQEPESIRKWREEQRKRLQEL--DAASKVMEQEWREKAKKDLEEWNQRQSEQVEKN 134
Query: 75 KAA 77
K
Sbjct: 135 KIN 137
Score = 27.4 bits (60), Expect = 6.0
Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 11/52 (21%)
Query: 28 ENHDEEVKAKEQNILQLGEK-----YKQEGKAIELAELIKKTRP----FLSQ 70
+ D K EQ + +K +++ + +E + R F Q
Sbjct: 99 QELDAASKVMEQEWREKAKKDLEEWNQRQSEQVE--KNKINNRIADKAFYQQ 148
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural
genomics, PSI-2, PR structure initiative; 1.83A
{Rhodopseudomonas palustris} SCOP: a.35.1.13
Length = 120
Score = 28.0 bits (62), Expect = 2.1
Identities = 11/70 (15%), Positives = 22/70 (31%), Gaps = 4/70 (5%)
Query: 32 EEVKAKEQNILQLGEKYKQEG-KAIELAELIKKTRPFLSQISKAKAAKLVRSLVDFFLDL 90
EE + K + L + A + +P +S + K V+ + L
Sbjct: 33 EERQTKLRLAYALNAVIDRARLSQAAAAARLGINQPKVSALRNYKLEGF---SVERLMTL 89
Query: 91 ETRTGMEVAL 100
+V +
Sbjct: 90 LNALDQDVEI 99
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A
{Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Length = 522
Score = 28.2 bits (62), Expect = 5.1
Identities = 10/73 (13%), Positives = 26/73 (35%), Gaps = 5/73 (6%)
Query: 26 EEENHDEEVKAKEQNIL--QLGEKYKQEGKAIELAELIKKTRPFLSQ---ISKAKAAKLV 80
+ E KA+ N+L + ++ + + + S+ I ++A++
Sbjct: 175 KIEAAQYGAKAEHWNLLWQREPMEHPFKEDPTQAMMKEGWLKRGSSRGQWIHGPQSARIF 234
Query: 81 RSLVDFFLDLETR 93
R+ L+
Sbjct: 235 RTFEKIVLEELLE 247
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 5.6
Identities = 11/65 (16%), Positives = 17/65 (26%), Gaps = 41/65 (63%)
Query: 146 KELKKLDDKNLLVEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCP---PKMQAALD 202
+ LKKL ASL +Y P AL
Sbjct: 20 QALKKLQ--------------------------ASL--------KLYADDSAP----ALA 41
Query: 203 LQSGI 207
+++ +
Sbjct: 42 IKATM 46
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus
thuringiensis serovar ISRAELE35646}
Length = 293
Score = 27.4 bits (60), Expect = 6.8
Identities = 5/50 (10%), Positives = 17/50 (34%)
Query: 124 LIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKTYHALSN 173
+ Y E+L + ++ +++ L+ ++ + L
Sbjct: 202 HAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEY 251
>1zau_A DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacterium tuberculosis}
Length = 328
Score = 27.1 bits (61), Expect = 9.6
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 228 EGFSTVDHNHAMMSL 242
F VDH M+SL
Sbjct: 78 TDFEPVDHLERMLSL 92
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.351
Gapped
Lambda K H
0.267 0.0620 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,443,649
Number of extensions: 330908
Number of successful extensions: 917
Number of sequences better than 10.0: 1
Number of HSP's gapped: 899
Number of HSP's successfully gapped: 54
Length of query: 374
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 279
Effective length of database: 4,049,298
Effective search space: 1129754142
Effective search space used: 1129754142
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.4 bits)