RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4083
         (374 letters)



>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 84

 Score = 64.4 bits (157), Expect = 7e-14
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 278 LYDNMLEQNLCRIIEPYSRVEVGFIAKSIKLDELAVEKKLSQMILDKKFHGILDQGEKVL 337
           L   ++E NL    + Y+ +    +   +++     EK  SQMI + + +G +DQ + + 
Sbjct: 12  LDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGI- 70

Query: 338 IVFEGAE 344
           + FE  E
Sbjct: 71  VHFETRE 77


>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III
           {Escherichia coli [TaxId: 562]}
          Length = 366

 Score = 29.5 bits (64), Expect = 0.67
 Identities = 21/139 (15%), Positives = 36/139 (25%), Gaps = 1/139 (0%)

Query: 108 AKEERRTFLRQSLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLLVEVLLLESKT 167
            K+ R   +     A    +  + G   EA +L+   L E          +    +  + 
Sbjct: 2   IKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLAL-EELPPGWFYSRIVATSVLGEV 60

Query: 168 YHALSNLSTSRASLTSARTTANSIYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYEAF 227
            H    L+ S A +      A           +L  QS IL A                 
Sbjct: 61  LHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQL 120

Query: 228 EGFSTVDHNHAMMSLKYML 246
                ++       L  + 
Sbjct: 121 INEQHLEQLPMHEFLVRIR 139



 Score = 28.0 bits (60), Expect = 1.9
 Identities = 21/148 (14%), Positives = 43/148 (29%), Gaps = 1/148 (0%)

Query: 98  VALCKECIEWAKEERRTFLRQSLEARLIALYFDTGEYTEALKLSSSLLKELKKLDDKNLL 157
             L K  +E            +  + L  +    GE T +L L     +  ++ D  +  
Sbjct: 32  ERLAKLALEELPPGWFYSRIVAT-SVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 90

Query: 158 VEVLLLESKTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALDLQSGILHAADEQDFK 217
           +  L+ +S+   A   L T+  +   A    N  +          ++             
Sbjct: 91  LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLD 150

Query: 218 TAFSYFYEAFEGFSTVDHNHAMMSLKYM 245
            A +      E  S+      +  L  +
Sbjct: 151 EAEASARSGIEVLSSYQPQQQLQCLAML 178


>d1b35a_ b.121.4.1 (A:) Insect picorna-like virus coat proteins
           {Cricket paralysis virus [TaxId: 12136]}
          Length = 260

 Score = 27.3 bits (60), Expect = 3.0
 Identities = 10/65 (15%), Positives = 21/65 (32%), Gaps = 13/65 (20%)

Query: 166 KTYHALSNLSTSRASLTSARTTANSIYCPPKMQAALDLQSGILHAADEQDFKTAFSYFYE 225
           K +    + +T +A  +S      ++  P K               +     T F Y+Y 
Sbjct: 50  KRFGIFGDANTLQADGSSFVVAPFTVTSPTKTLT---------STRN----YTQFDYYYY 96

Query: 226 AFEGF 230
            +  +
Sbjct: 97  LYAFW 101


>d1pjqa3 e.37.1.1 (A:114-215) Siroheme synthase CysG, domains 2 and
           3 {Salmonella typhimurium [TaxId: 90371]}
          Length = 102

 Score = 25.6 bits (56), Expect = 5.0
 Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 10/84 (11%)

Query: 77  AKLVRSLVDFFLDLETRTGMEVALCKECIEWAKE------ERRTFLRQSLEARLIALYFD 130
           A+L+R  ++  L      G       +     K+      ERR F  +      +A    
Sbjct: 23  ARLLREKLESLLPQHL--GQVARYAGQLRARVKKQFATMGERRRFWEKFFVNDRLAQSLA 80

Query: 131 TGEYTEALKLSSSLLKELKKLDDK 154
             +       +  L  E   LD +
Sbjct: 81  NADEKAVNATTERLFSE--PLDHR 102


>d2evea1 b.122.1.8 (A:2-149) Hypothetical protein PSPTO5229
           {Pseudomonas syringae [TaxId: 317]}
          Length = 148

 Score = 25.6 bits (56), Expect = 7.4
 Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 288 CRIIEPYSRVEVGFIAK---SIKLDELAVEKKLSQMILDKK 325
                P+S +++GF+      + L  L  + +L Q+ L +K
Sbjct: 87  TTEKNPWSALDIGFVDIFKNVLGLGYLKQQSQLEQLPLVQK 127


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.131    0.351 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,276,202
Number of extensions: 58569
Number of successful extensions: 210
Number of sequences better than 10.0: 1
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 17
Length of query: 374
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 287
Effective length of database: 1,213,086
Effective search space: 348155682
Effective search space used: 348155682
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.7 bits)