RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4084
(86 letters)
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 36.5 bits (83), Expect = 2e-04
Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
Query: 1 MSECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS-DRQFACHMCIK 59
+ + + + QF C +C+ F S L+ H+ + C +C K
Sbjct: 49 TLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKVCPVCKK 108
Query: 60 VFPSQDKLRMHM 71
F S D H+
Sbjct: 109 EFTSTDSALDHV 120
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 32.5 bits (75), Expect = 0.003
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 15 RKHIRTFHS-DRQFACHMCIKVFPSQDKLRMHML-----SDRQFACHMCIKVFPSQDKLR 68
RT HS ++ + C++C F ++MH+L + +F C C V + L
Sbjct: 4 GSSGRT-HSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLG 62
Query: 69 MHM 71
+H+
Sbjct: 63 VHL 65
Score = 27.5 bits (62), Expect = 0.24
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 2 SECMGKFTEYQVIRKHIRTFHSDRQ--FACHMCIKVFPSQDKLRMHM 46
C +FT+ ++ HI H++ F C C V + L +H+
Sbjct: 19 YICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL 65
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 32.0 bits (73), Expect = 0.004
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 6/51 (11%)
Query: 27 FACHMCIKVFPSQDKLRMHM------LSDRQFACHMCIKVFPSQDKLRMHM 71
C +C + L H ++ +F C C K F D + H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHR 58
Score = 25.4 bits (56), Expect = 1.2
Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 3/48 (6%)
Query: 2 SECMGKFTEYQVIRKHIRT---FHSDRQFACHMCIKVFPSQDKLRMHM 46
C + + H R + +F C C K F D + H
Sbjct: 11 EICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHR 58
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 31.4 bits (72), Expect = 0.008
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 15 RKHIRTFHSDRQFACHM--CIKVFPSQDKLRMHMLS---DRQFACHMCIKVFPSQDKLRM 69
+ H+RT ++ + C C F D+L H + F C +C + F D L +
Sbjct: 34 KAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLAL 93
Query: 70 HM 71
HM
Sbjct: 94 HM 95
Score = 29.9 bits (68), Expect = 0.035
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 3 ECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHM 46
C +F + +H R + F C +C + F D L +HM
Sbjct: 52 GCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHM 95
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 30.4 bits (69), Expect = 0.015
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 3 ECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHM 46
C +F+ + +HIR + F C +C++ F D L H+
Sbjct: 26 SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 69
Score = 28.8 bits (65), Expect = 0.058
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Query: 15 RKHIRTFHSDRQFACHM--CIKVFPSQDKLRMHMLS---DRQFACHMCIKVFPSQDKLRM 69
++ R +AC + C + F D+L H+ + F C +C++ F D L
Sbjct: 10 LNYVVP--KMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTT 67
Query: 70 HM 71
H+
Sbjct: 68 HI 69
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 31.0 bits (69), Expect = 0.034
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 17 HIRTFHSDRQFACHMCIKVFPSQDKLRMHM 46
T S + CH+C V S L H+
Sbjct: 171 LPPTASSGHGYQCHVCSAVLFSPLDLDAHV 200
Score = 30.2 bits (67), Expect = 0.056
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 48 SDRQFACHMCIKVFPSQDKLRMHM 71
S + CH+C V S L H+
Sbjct: 177 SGHGYQCHVCSAVLFSPLDLDAHV 200
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 29.1 bits (66), Expect = 0.048
Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 27 FACHMCIKVFPSQDKLRMHMLS-----DRQFACHMCIKVFPSQDKLRMHM 71
+ C +C +V+ H ++ + + C C K F +D + H+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60
Score = 26.4 bits (59), Expect = 0.54
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 2 SECMGKFTEYQVIRKHIRTFHS--DRQFACHMCIKVFPSQDKLRMHM 46
C +T +H T H + + C C K F +D + H+
Sbjct: 14 KVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 28.6 bits (65), Expect = 0.082
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 15 RKHIRTFHSDRQFACHM--CIKVFPSQDKLRMHMLS---DRQFACHMCIKVFPSQDKLRM 69
+ H+RT ++ + C C F D+L H R F C C + F D L +
Sbjct: 24 KAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLAL 83
Query: 70 HM 71
HM
Sbjct: 84 HM 85
Score = 26.3 bits (59), Expect = 0.56
Identities = 14/44 (31%), Positives = 18/44 (40%)
Query: 3 ECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHM 46
C KF + +H R R F C C + F D L +HM
Sbjct: 42 GCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHM 85
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 29.8 bits (66), Expect = 0.084
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 23 SDRQFACHMCIKVFPSQDKLRMHM 46
+ + C++C F + L H+
Sbjct: 113 NPSSYVCNVCNARFSTMSALSEHL 136
Score = 29.8 bits (66), Expect = 0.084
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 48 SDRQFACHMCIKVFPSQDKLRMHM 71
+ + C++C F + L H+
Sbjct: 113 NPSSYVCNVCNARFSTMSALSEHL 136
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic
acid binding, KIAA1227 protein, structural genomics;
NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 28.7 bits (63), Expect = 0.11
Identities = 10/58 (17%), Positives = 16/58 (27%), Gaps = 1/58 (1%)
Query: 15 RKHIRTFHSDRQFACHMCIKVFPSQDKLRMHM-LSDRQFACHMCIKVFPSQDKLRMHM 71
+ + C +C S + H L C C F S + + H
Sbjct: 5 SSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEHE 62
Score = 27.9 bits (61), Expect = 0.20
Identities = 14/69 (20%), Positives = 22/69 (31%), Gaps = 4/69 (5%)
Query: 4 CMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS--DRQFACHMCIKVF 61
C K + H R C C F S + + H ++ C C++ F
Sbjct: 22 CNAKLSSLLEQGSHERLCR--NAAVCPYCSLRFFSPELKQEHESKCEYKKLTCLECMRTF 79
Query: 62 PSQDKLRMH 70
S + H
Sbjct: 80 KSSFSIWRH 88
Score = 24.1 bits (51), Expect = 6.6
Identities = 8/44 (18%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 2 SECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMH 45
C +F ++ ++H + ++ C C++ F S + H
Sbjct: 46 PYCSLRFFSPELKQEH-ESKCEYKKLTCLECMRTFKSSFSIWRH 88
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 28.6 bits (65), Expect = 0.11
Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 3 ECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHM--C 57
C F + +RKH+ T H R C C K F KL+ H L ++ F C C
Sbjct: 12 GCTKMFRDNSAMRKHLHT-HGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGC 70
Query: 58 IKVFPSQDKLRMHM 71
K F LR H+
Sbjct: 71 GKRFSLDFNLRTHV 84
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 28.0 bits (62), Expect = 0.17
Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 12/64 (18%)
Query: 22 HSDRQFACHMCIKVFPSQDKLRMHMLSD----RQFACHMCI--------KVFPSQDKLRM 69
+ C + F + +L H+ + + H+C K F ++ KL
Sbjct: 21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVN 80
Query: 70 HMLS 73
H+
Sbjct: 81 HIRV 84
Score = 24.9 bits (54), Expect = 2.2
Identities = 10/56 (17%), Positives = 16/56 (28%), Gaps = 9/56 (16%)
Query: 2 SECMGKFTEYQVIRKHIRTFHSDRQ---------FACHMCIKVFPSQDKLRMHMLS 48
C F+ + H+ H C K F ++ KL H+
Sbjct: 29 KSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRV 84
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 66
Score = 26.7 bits (58), Expect = 0.43
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 27 FACHMCIKVFPSQDKLRMH 45
C +C KVF ++LR H
Sbjct: 14 LPCGLCGKVFTDANRLRQH 32
Score = 26.7 bits (58), Expect = 0.43
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 52 FACHMCIKVFPSQDKLRMH 70
C +C KVF ++LR H
Sbjct: 14 LPCGLCGKVFTDANRLRQH 32
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 26.1 bits (57), Expect = 0.50
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 23 SDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMC 57
+ +Q AC +C K+F L H LS ++ ++
Sbjct: 9 TRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 24.1 bits (52), Expect = 2.4
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 48 SDRQFACHMCIKVFPSQDKLRMHMLS 73
+ +Q AC +C K+F L H LS
Sbjct: 9 TRKQVACEICGKIFRDVYHLNRHKLS 34
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A
{Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB:
1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A*
1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 26.7 bits (60), Expect = 0.53
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 2 SECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMCI 58
C +F++ + +HIR + F C +C++ F D L H+ + ++ FAC +C
Sbjct: 10 ESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 59 KVFPSQDKLRMHM 71
+ F D+ + H
Sbjct: 70 RKFARSDERKRHT 82
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo
sapiens}
Length = 155
Score = 26.9 bits (60), Expect = 0.61
Identities = 10/67 (14%), Positives = 18/67 (26%), Gaps = 12/67 (17%)
Query: 17 HIRTFHSDRQFACHMCIKVFPSQDKLRMHM------------LSDRQFACHMCIKVFPSQ 64
+ C + F + +L H+ C K F ++
Sbjct: 16 CKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAK 75
Query: 65 DKLRMHM 71
KL H+
Sbjct: 76 YKLVNHI 82
Score = 24.9 bits (55), Expect = 3.4
Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 14/84 (16%)
Query: 2 SECMGKFTEYQVIRKHIRTFH---------SDRQFACHMCIKVFPSQDKLRMHMLS---D 49
C F+ + H+ H C K F ++ KL H+ +
Sbjct: 29 KSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGE 88
Query: 50 RQFACHM--CIKVFPSQDKLRMHM 71
+ F C C K+F + L++H
Sbjct: 89 KPFPCPFPGCGKIFARSENLKIHK 112
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 26.8 bits (60), Expect = 0.65
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 11/54 (20%)
Query: 29 CHMCIKVFPSQDKLRMHMLSDR-----------QFACHMCIKVFPSQDKLRMHM 71
C + F SQ++L H+ S+ C ++ F +Q L +HM
Sbjct: 6 WDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHM 59
Score = 24.9 bits (55), Expect = 3.6
Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 13/82 (15%)
Query: 3 ECMGKFTEYQVIRKHIRTFHSD--------RQFACHMCIKVFPSQDKLRMHMLS---DRQ 51
C +F + + HI + H C ++ F +Q L +HM ++
Sbjct: 8 GCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKP 67
Query: 52 FACHM--CIKVFPSQDKLRMHM 71
C C K + + L+ H+
Sbjct: 68 HKCTFEGCRKSYSRLENLKTHL 89
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 26.3 bits (59), Expect = 0.71
Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 2/72 (2%)
Query: 2 SECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS--DRQFACHMCIK 59
CM F+ + HIRT ++ FAC +C + F D+ + H +
Sbjct: 7 RICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILEDKVEE 66
Query: 60 VFPSQDKLRMHM 71
+ L +
Sbjct: 67 LLSKNYHLENEV 78
Score = 24.4 bits (54), Expect = 4.0
Identities = 5/49 (10%), Positives = 11/49 (22%), Gaps = 1/49 (2%)
Query: 2 SECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLSDR 50
C KF ++H ++ L + +
Sbjct: 35 DICGRKFARSDERKRHRDI-QHILPILEDKVEELLSKNYHLENEVARLK 82
Score = 24.0 bits (53), Expect = 5.2
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 27 FACHMCIKVFPSQDKLRMHMLS---DRQFACHMCIKVFPSQDKLRMHM 71
F C +C++ F D L H+ + ++ FAC +C + F D+ + H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHR 51
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 24.6 bits (54), Expect = 1.5
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 17 HIRTFHSDRQFACHMCIKVFPSQDKLRMHM 46
R + F C C + F D L +H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHR 31
Score = 22.7 bits (49), Expect = 6.2
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 49 DRQFACHMCIKVFPSQDKLRMHM 71
+ F C C + F D L +H
Sbjct: 9 IKPFQCPDCDRSFSRSDHLALHR 31
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 25.7 bits (55), Expect = 1.6
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 14 IRKHIRTFHSDRQ-FACHMCIKVFPSQDKLRMHMLSD 49
++KH+ + C C K F S+ L H +++
Sbjct: 41 LKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAE 77
Score = 24.5 bits (52), Expect = 3.6
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 19 RTFHSDRQFACHMCIKVF-PSQDKLRMHMLSDRQ----FACHMCIKVFPSQDKLRMHMLS 73
R H + C C V + L+ HM ++ C C K F S+ L H ++
Sbjct: 17 RAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMA 76
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 25.1 bits (54), Expect = 1.6
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 3 ECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHM 46
EC + + +++KHIRT R + C C F ++ L HM
Sbjct: 6 ECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain,
ablim2, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 81
Score = 25.1 bits (55), Expect = 1.8
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 6 GKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLSDRQFACHMC 57
+F E +V+ +T+H D F C +C FP D+ + ++ C C
Sbjct: 22 DQFIEGEVVSALGKTYHPD-CFVCAVCRLPFPPGDR---VTFNGKECMCQKC 69
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 25.9 bits (56), Expect = 1.8
Identities = 5/44 (11%), Positives = 14/44 (31%)
Query: 3 ECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHM 46
+ M + H +++ +V + + LR +
Sbjct: 185 DYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPI 228
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 25.1 bits (54), Expect = 2.4
Identities = 7/47 (14%), Positives = 15/47 (31%)
Query: 2 SECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS 48
+ + + + + + C C F S L +HM+
Sbjct: 56 NPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIK 102
Score = 23.6 bits (50), Expect = 9.7
Identities = 9/62 (14%), Positives = 18/62 (29%), Gaps = 2/62 (3%)
Query: 12 QVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLSD--RQFACHMCIKVFPSQDKLRM 69
+ + F +F C C + + +L +HM + H P +
Sbjct: 5 SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPR 64
Query: 70 HM 71
Sbjct: 65 KR 66
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.2 bits (54), Expect = 3.5
Identities = 17/100 (17%), Positives = 27/100 (27%), Gaps = 36/100 (36%)
Query: 23 SDRQFACHMCIKVF------PSQDKLRMHMLSD--RQFACHMCIKVFPS----------Q 64
+ C M K+F + + + ML Q + + S Q
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 65 DKLRMHMLSG-----------------LQTFDLKSK-LCT 86
+LR + S F+L K L T
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT 271
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 24.4 bits (52), Expect = 4.2
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 19 RTFHSDRQFACHMCIKV-FPSQDKLRMHMLSDRQ--FACHMCIKVFPSQDKLRMHMLS 73
+C C V + + L+ HM + +Q F CH C K S ++ H+++
Sbjct: 27 LEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMA 84
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 43
Score = 23.3 bits (49), Expect = 4.8
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 2 SECMGKFTEYQVIRKHIRTFHSDR 25
+EC +F+E +++H HSD+
Sbjct: 14 NECDCRFSEEASLKRHTLQTHSDK 37
>3ax1_A Serrate RNA effector molecule; miRNA processing, protein binding;
2.74A {Arabidopsis thaliana}
Length = 358
Score = 24.6 bits (52), Expect = 4.9
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 1 MSECMGKFTEYQVIRKHIRTFHSD 24
C F + + KH++ H++
Sbjct: 309 AKGCTKLFHAAEFVYKHLKLKHTE 332
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 24.4 bits (54), Expect = 5.0
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 3 ECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHM--C 57
+C +F+ +++H R + F C C + F D L+ H + ++ F+C C
Sbjct: 43 DCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSC 102
Query: 58 IKVFPSQDKLRMHM 71
K F D+L H
Sbjct: 103 QKKFARSDELVRHH 116
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 24.0 bits (53), Expect = 5.2
Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 7/64 (10%)
Query: 15 RKHIRTFHSDRQFACHMCIKVFPSQDKLRMHM-------LSDRQFACHMCIKVFPSQDKL 67
RT ++ +AC C K F + L MH F C C K F ++ +
Sbjct: 4 GSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTM 63
Query: 68 RMHM 71
H
Sbjct: 64 ARHA 67
>1hcu_A Alpha-1,2-mannosidase; glycosylation, glycosyl hydrolase; HET:
NAG; 2.37A {Trichoderma reesei} SCOP: a.102.2.1
Length = 503
Score = 24.5 bits (53), Expect = 6.1
Identities = 5/32 (15%), Positives = 10/32 (31%)
Query: 5 MGKFTEYQVIRKHIRTFHSDRQFACHMCIKVF 36
MG I +++ + + VF
Sbjct: 68 MGDADIVNTILQYVPQINFTTTAVANQGSSVF 99
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 23.6 bits (52), Expect = 6.6
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 3 ECMGK-FTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHML-----SDRQFACHM 56
C GK F + + +H + ++ ++C +C F +D++ H+ + + C
Sbjct: 12 IC-GKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQS 70
Query: 57 CIKVFPSQDKLRMHM 71
C K F D L H+
Sbjct: 71 CGKGFSRPDHLNGHI 85
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 23.6 bits (52), Expect = 8.1
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 2 SECMGK-FTEYQVIRKHIRTFH---SDRQFACHMCIKVFPSQDKLRMHMLS---DRQFAC 54
+C GK + + + +H S++ F C +C + F + +LR+HM+S + + C
Sbjct: 39 PKC-GKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKC 97
Query: 55 HMCIKVFPSQDKLRMHM 71
C + F + L+ HM
Sbjct: 98 SSCSQQFMQKKDLQSHM 114
>1njq_A Superman protein; zinc-finger, peptide-zinc complex,
beta-BETA-ALFA motif, metal binding protein; NMR
{Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 22.4 bits (48), Expect = 8.4
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 25 RQFACHMCIKVFPSQDKLRMHM 46
R + C C + F S L HM
Sbjct: 5 RSYTCSFCKREFRSAQALGGHM 26
Score = 22.4 bits (48), Expect = 8.4
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 50 RQFACHMCIKVFPSQDKLRMHM 71
R + C C + F S L HM
Sbjct: 5 RSYTCSFCKREFRSAQALGGHM 26
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 23.8 bits (50), Expect = 8.5
Identities = 7/27 (25%), Positives = 9/27 (33%)
Query: 47 LSDRQFACHMCIKVFPSQDKLRMHMLS 73
DR C +C F S H +
Sbjct: 89 GEDRSKCCPVCNMTFSSPVVAESHYIG 115
Score = 23.8 bits (50), Expect = 9.1
Identities = 7/26 (26%), Positives = 9/26 (34%)
Query: 23 SDRQFACHMCIKVFPSQDKLRMHMLS 48
DR C +C F S H +
Sbjct: 90 EDRSKCCPVCNMTFSSPVVAESHYIG 115
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.334 0.138 0.448
Gapped
Lambda K H
0.267 0.0443 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,198,931
Number of extensions: 54623
Number of successful extensions: 485
Number of sequences better than 10.0: 1
Number of HSP's gapped: 434
Number of HSP's successfully gapped: 104
Length of query: 86
Length of database: 6,701,793
Length adjustment: 54
Effective length of query: 32
Effective length of database: 5,194,059
Effective search space: 166209888
Effective search space used: 166209888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 51 (24.1 bits)