RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4084
(86 letters)
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 25.8 bits (56), Expect = 0.21
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 3 ECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHM 46
+C FT +H+ R + C +C K F + L HM
Sbjct: 7 QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM 50
Score = 22.3 bits (47), Expect = 5.9
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 24 DRQFACHMCIKVFPSQDKLRMHMLSD---RQFACHMCIKVFPSQDKLRMHM 71
D+ + C C K F + + HM R + C +C K F + L HM
Sbjct: 1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM 50
>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 53
Score = 25.7 bits (56), Expect = 0.30
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 27 FACHMCIKVFPSQDKLRMH 45
C +C KVF ++LR H
Sbjct: 7 LPCGLCGKVFTDANRLRQH 25
Score = 25.7 bits (56), Expect = 0.30
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 52 FACHMCIKVFPSQDKLRMH 70
C +C KVF ++LR H
Sbjct: 7 LPCGLCGKVFTDANRLRQH 25
>d1gtea5 d.58.1.5 (A:845-1017) Dihydropyrimidine dehydrogenase,
C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 173
Score = 25.9 bits (56), Expect = 0.64
Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 8/64 (12%)
Query: 14 IRKHIRTFHSDRQFACHMCIKVFPSQ--------DKLRMHMLSDRQFACHMCIKVFPSQD 65
I + + + C C + + ++D C +C+ V P D
Sbjct: 97 IEQVVAVIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTVTDTCTGCTLCLSVCPIID 156
Query: 66 KLRM 69
+RM
Sbjct: 157 CIRM 160
>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 30
Score = 23.9 bits (51), Expect = 0.89
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 23 SDRQFACHMCIKVFPSQDKLRMHMLS 48
S++ F C +C + F + +LR+HM+S
Sbjct: 1 SEQVFTCSVCQETFRRRMELRLHMVS 26
Score = 23.9 bits (51), Expect = 0.89
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 48 SDRQFACHMCIKVFPSQDKLRMHMLS 73
S++ F C +C + F + +LR+HM+S
Sbjct: 1 SEQVFTCSVCQETFRRRMELRLHMVS 26
>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7
{Human (Homo sapiens) [TaxId: 9606]}
Length = 147
Score = 25.1 bits (54), Expect = 1.2
Identities = 5/51 (9%), Positives = 12/51 (23%), Gaps = 2/51 (3%)
Query: 21 FHSDRQFACHMCIKVFPSQDKLRMHMLSDRQFACHMCIKVFPSQDKLRMHM 71
+ + FAC + S + + + F +
Sbjct: 49 IQNVQDFACQCLNRDVWSNEA--VKNIIREHFIFWQVYHDSEEGQRYIQFY 97
>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis
elegans [TaxId: 6239]}
Length = 274
Score = 25.0 bits (54), Expect = 1.5
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 69 MHMLSGLQTFDLKSKL 84
++ G+QT DL S L
Sbjct: 258 STLVMGMQTHDLMSVL 273
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 37
Score = 22.7 bits (49), Expect = 2.2
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 25 RQFACHMCIKVFPSQDKLRMHMLSDRQ 51
R + C C + F S L HM R+
Sbjct: 4 RSYTCSFCKREFRSAQALGGHMNVHRR 30
Score = 22.0 bits (47), Expect = 4.4
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 50 RQFACHMCIKVFPSQDKLRMHM 71
R + C C + F S L HM
Sbjct: 4 RSYTCSFCKREFRSAQALGGHM 25
>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 121
Score = 24.0 bits (52), Expect = 2.2
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 22 HSDRQFACHMCIKVFPSQDKLRMHMLSDRQF 52
H + C C ++F S ++ H + QF
Sbjct: 11 HGRQHTPCLFCDRLFASAEETFSHCKLEHQF 41
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 22.4 bits (48), Expect = 3.1
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 17 HIRTFHSDRQFACHMCIKVFPSQDKLRMHM 46
R + F C C + F D L +H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHR 31
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 21.9 bits (46), Expect = 5.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 29 CHMCIKVFPSQDKLRMHMLS 48
C +C K F +DKL+ HM
Sbjct: 4 CEVCGKCFSRKDKLKTHMRC 23
Score = 21.9 bits (46), Expect = 5.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 54 CHMCIKVFPSQDKLRMHMLS 73
C +C K F +DKL+ HM
Sbjct: 4 CEVCGKCFSRKDKLKTHMRC 23
>d1pgl21 b.121.4.2 (2:1-182) Comovirus coat proteins (VP37 and VP23)
{BPMV (Bean pod mottle virus) [TaxId: 12260]}
Length = 182
Score = 22.9 bits (49), Expect = 6.8
Identities = 7/31 (22%), Positives = 10/31 (32%), Gaps = 2/31 (6%)
Query: 28 ACHMCIKVFPSQDKLRMHMLSDRQFACHMCI 58
A M P D + L ++ H I
Sbjct: 122 AMTMSFNPNPCSDAWSLEFL--KRTGFHCDI 150
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 21.6 bits (46), Expect = 7.7
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 19 RTFHSDRQFACHMCIKVFPSQDKLRMHM 46
RT ++ +AC C K F + L MH
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMHF 28
>d1hcua_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic
domain {Trichoderma reesei [TaxId: 51453]}
Length = 488
Score = 22.7 bits (48), Expect = 7.8
Identities = 5/32 (15%), Positives = 10/32 (31%)
Query: 5 MGKFTEYQVIRKHIRTFHSDRQFACHMCIKVF 36
MG I +++ + + VF
Sbjct: 62 MGDADIVNTILQYVPQINFTTTAVANQGSSVF 93
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.334 0.138 0.448
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 313,146
Number of extensions: 11925
Number of successful extensions: 144
Number of sequences better than 10.0: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 66
Length of query: 86
Length of database: 2,407,596
Length adjustment: 51
Effective length of query: 35
Effective length of database: 1,707,366
Effective search space: 59757810
Effective search space used: 59757810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 47 (22.1 bits)