BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4086
(305 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B4MM23|SHEP_DROWI Protein alan shepard OS=Drosophila willistoni GN=shep PE=3 SV=2
Length = 581
Score = 291 bits (746), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 153/260 (58%), Positives = 188/260 (72%), Gaps = 24/260 (9%)
Query: 54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYA 113
EQLSKTNLYIRGL Q TTDKDL+NMC+QYG IISTKAILDKTTNKC+GYGFVDFE YA
Sbjct: 232 EQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAYA 291
Query: 114 LAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN 173
AVK LQ KG+ AQMA+QQEQDPTNLYIANLP +FKE DLE++L+KY VVSTRILRD
Sbjct: 292 ENAVKGLQAKGVQAQMAKQQEQDPTNLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQ 351
Query: 174 NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRGAGAGGPNIYR 233
SKGVGFAR+ES++KC+Q+IQ+FNG+T+PG+K+PLLVKFAD G KK+ N+++
Sbjct: 352 QMNSKGVGFARMESREKCEQIIQMFNGNTIPGAKDPLLVKFADGGPKKK-------NLFK 404
Query: 234 GPGAEVRLWGRDSADS-QLAYEHPM----------TPIPATIQYQRFTAGPGGTGHIPAG 282
P R W SA+ +AY+ + TPI + Y RF+A P G P
Sbjct: 405 TPDPNTRAWRDVSAEGIPVAYDPTLQQNGVSVNVGTPI--GVPYSRFSAPP--VGGYPVA 460
Query: 283 YTPWVPTQYVMPAPHMSQVE 302
+ W+P Y+M P ++QV+
Sbjct: 461 GSQWIPG-YMMTQP-ITQVD 478
>sp|B4IX08|SHEP_DROGR Protein alan shepard OS=Drosophila grimshawi GN=shep PE=3 SV=1
Length = 609
Score = 288 bits (736), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 153/258 (59%), Positives = 184/258 (71%), Gaps = 24/258 (9%)
Query: 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALA 115
LSKTNLYIRGL Q TTDKDLINMC+QYG IISTKAILDKTTNKC+GYGFVDFE YA
Sbjct: 254 LSKTNLYIRGLQQGTTDKDLINMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAYAEG 313
Query: 116 AVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNN 175
AVK LQ KG+ AQMA+QQEQDPTNLYIANLP +FKE DLE++LAKY VVSTRILRD
Sbjct: 314 AVKGLQAKGVQAQMAKQQEQDPTNLYIANLPPHFKETDLEAMLAKYGQVVSTRILRDQQM 373
Query: 176 TSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRGAGAGGPNIYRGP 235
SKGVGFAR+ES++KC+Q+IQ+FNG+T+PG+K+PLLVKFAD G KK+ N+++ P
Sbjct: 374 NSKGVGFARMESREKCEQIIQMFNGNTIPGAKDPLLVKFADGGPKKK-------NLFKTP 426
Query: 236 GAEVRLWGRDSADS-QLAYEHPM----------TPIPATIQYQRFTAGPGGTGHIPAGYT 284
R W SA+ +AY+ M TPI + Y RF G G P +
Sbjct: 427 DPSARAWRDVSAEGIPVAYDPSMQQNGVSVNVGTPI--GVPYSRF--GAPQVGGYPVAGS 482
Query: 285 PWVPTQYVMPAPHMSQVE 302
W+P Y+M P ++QV+
Sbjct: 483 QWIPG-YMMTQP-ITQVD 498
>sp|B4LFQ9|SHEP_DROVI Protein alan shepard OS=Drosophila virilis GN=shep PE=3 SV=2
Length = 595
Score = 287 bits (735), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 153/258 (59%), Positives = 184/258 (71%), Gaps = 24/258 (9%)
Query: 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALA 115
LSKTNLYIRGL Q TTDKDLINMC+QYG IISTKAILDKTTNKC+GYGFVDFE YA
Sbjct: 240 LSKTNLYIRGLQQGTTDKDLINMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAYAEG 299
Query: 116 AVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNN 175
AVK LQ KG+ AQMA+QQEQDPTNLYIANLP +FKE DLE++LAKY VVSTRILRD
Sbjct: 300 AVKGLQAKGVQAQMAKQQEQDPTNLYIANLPPHFKETDLEAMLAKYGQVVSTRILRDQQM 359
Query: 176 TSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRGAGAGGPNIYRGP 235
SKGVGFAR+ES++KC+Q+IQ+FNG+T+PG+K+PLLVKFAD G KK+ N+++ P
Sbjct: 360 NSKGVGFARMESREKCEQIIQMFNGNTIPGAKDPLLVKFADGGPKKK-------NLFKTP 412
Query: 236 GAEVRLWGRDSADS-QLAYEHPM----------TPIPATIQYQRFTAGPGGTGHIPAGYT 284
R W SA+ +AY+ M TPI + Y RF G G P +
Sbjct: 413 DPNARAWRDVSAEGIPVAYDPTMQQNGVSVNVGTPI--GVPYSRF--GAPQVGGYPVAGS 468
Query: 285 PWVPTQYVMPAPHMSQVE 302
W+P Y+M P ++QV+
Sbjct: 469 QWIPG-YMMTQP-ITQVD 484
>sp|B3NGA1|SHEP_DROER Protein alan shepard OS=Drosophila erecta GN=shep PE=3 SV=1
Length = 582
Score = 284 bits (727), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 150/258 (58%), Positives = 185/258 (71%), Gaps = 24/258 (9%)
Query: 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALA 115
LSKTNLYIRGL Q TTDKDL+NMC+QYG IISTKAILDKTTNKC+GYGFVDFE +A
Sbjct: 228 LSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAEC 287
Query: 116 AVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNN 175
AVK LQ KG+ AQMA+QQEQDPTNLYIANLP +FKE DLE++L+KY VVSTRILRD
Sbjct: 288 AVKGLQGKGVQAQMAKQQEQDPTNLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQQM 347
Query: 176 TSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRGAGAGGPNIYRGP 235
SKGVGFAR+ES++KC+Q+IQ+FNG+T+PG+K+PLLVKFAD G KK+ N+++ P
Sbjct: 348 NSKGVGFARMESREKCEQIIQMFNGNTIPGAKDPLLVKFADGGPKKK-------NLFKTP 400
Query: 236 GAEVRLWGRDSADS-QLAYEHPM----------TPIPATIQYQRFTAGPGGTGHIPAGYT 284
R W SA+ +AY+ M TPI + Y RF+A G P +
Sbjct: 401 DPNARAWRDVSAEGIPVAYDPTMQQNGVSVNVGTPI--GVPYSRFSA--PQVGGYPVAGS 456
Query: 285 PWVPTQYVMPAPHMSQVE 302
W+P Y+M P ++QV+
Sbjct: 457 QWIPG-YMMTQP-ITQVD 472
>sp|B4PIS2|SHEP_DROYA Protein alan shepard OS=Drosophila yakuba GN=shep PE=3 SV=1
Length = 582
Score = 284 bits (727), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 150/258 (58%), Positives = 185/258 (71%), Gaps = 24/258 (9%)
Query: 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALA 115
LSKTNLYIRGL Q TTDKDL+NMC+QYG IISTKAILDKTTNKC+GYGFVDFE +A
Sbjct: 228 LSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAEC 287
Query: 116 AVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNN 175
AVK LQ KG+ AQMA+QQEQDPTNLYIANLP +FKE DLE++L+KY VVSTRILRD
Sbjct: 288 AVKGLQGKGVQAQMAKQQEQDPTNLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQQM 347
Query: 176 TSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRGAGAGGPNIYRGP 235
SKGVGFAR+ES++KC+Q+IQ+FNG+T+PG+K+PLLVKFAD G KK+ N+++ P
Sbjct: 348 NSKGVGFARMESREKCEQIIQMFNGNTIPGAKDPLLVKFADGGPKKK-------NLFKTP 400
Query: 236 GAEVRLWGRDSADS-QLAYEHPM----------TPIPATIQYQRFTAGPGGTGHIPAGYT 284
R W SA+ +AY+ M TPI + Y RF+A G P +
Sbjct: 401 DPNARAWRDVSAEGIPVAYDPTMQQNGVSVNVGTPI--GVPYSRFSA--PQVGGYPVAGS 456
Query: 285 PWVPTQYVMPAPHMSQVE 302
W+P Y+M P ++QV+
Sbjct: 457 QWIPG-YMMTQP-ITQVD 472
>sp|Q8MSV2|SHEP_DROME Protein alan shepard OS=Drosophila melanogaster GN=shep PE=1 SV=1
Length = 578
Score = 283 bits (724), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 145/244 (59%), Positives = 176/244 (72%), Gaps = 22/244 (9%)
Query: 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALA 115
LSKTNLYIRGL Q TTDKDL+NMC+QYG IISTKAILDKTTNKC+GYGFVDFE +A
Sbjct: 228 LSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAEC 287
Query: 116 AVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNN 175
AVK LQ KG+ AQMA+QQEQDPTNLYIANLP +FKE DLE++L+KY VVSTRILRD
Sbjct: 288 AVKGLQGKGVQAQMAKQQEQDPTNLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQQM 347
Query: 176 TSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRGAGAGGPNIYRGP 235
SKGVGFAR+ES++KC+Q+IQ+FNG+T+PG+K+PLLVKFAD G KK+ N+++ P
Sbjct: 348 NSKGVGFARMESREKCEQIIQMFNGNTIPGAKDPLLVKFADGGPKKK-------NLFKTP 400
Query: 236 GAEVRLWGRDSADS-QLAYEHPM----------TPIPATIQYQRFTAGPGGTGHIPAGYT 284
R W SA+ +AY+ M TPI + Y RF+A G P +
Sbjct: 401 DPNARAWRDVSAEGIPVAYDPTMQQNGVSVNVGTPI--GVPYSRFSA--PQVGGYPVAGS 456
Query: 285 PWVP 288
W+P
Sbjct: 457 QWIP 460
>sp|B4HUE4|SHEP_DROSE Protein alan shepard OS=Drosophila sechellia GN=shep PE=3 SV=1
Length = 579
Score = 283 bits (724), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 145/244 (59%), Positives = 176/244 (72%), Gaps = 22/244 (9%)
Query: 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALA 115
LSKTNLYIRGL Q TTDKDL+NMC+QYG IISTKAILDKTTNKC+GYGFVDFE +A
Sbjct: 228 LSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAEC 287
Query: 116 AVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNN 175
AVK LQ KG+ AQMA+QQEQDPTNLYIANLP +FKE DLE++L+KY VVSTRILRD
Sbjct: 288 AVKGLQGKGVQAQMAKQQEQDPTNLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQQM 347
Query: 176 TSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRGAGAGGPNIYRGP 235
SKGVGFAR+ES++KC+Q+IQ+FNG+T+PG+K+PLLVKFAD G KK+ N+++ P
Sbjct: 348 NSKGVGFARMESREKCEQIIQMFNGNTIPGAKDPLLVKFADGGPKKK-------NLFKTP 400
Query: 236 GAEVRLWGRDSADS-QLAYEHPM----------TPIPATIQYQRFTAGPGGTGHIPAGYT 284
R W SA+ +AY+ M TPI + Y RF+A G P +
Sbjct: 401 DPNARAWRDVSAEGIPVAYDPTMQQNGVSVNVGTPI--GVPYSRFSA--PQVGGYPVAGS 456
Query: 285 PWVP 288
W+P
Sbjct: 457 QWIP 460
>sp|B4QRJ0|SHEP_DROSI Protein alan shepard OS=Drosophila simulans GN=shep PE=3 SV=1
Length = 576
Score = 275 bits (704), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 144/244 (59%), Positives = 174/244 (71%), Gaps = 24/244 (9%)
Query: 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALA 115
LSKTNLYIRGL Q TTDKDL+NMC+QYG IISTKAILDKTTNKC YGFVDFE +A
Sbjct: 228 LSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKC--YGFVDFEQPAFAEC 285
Query: 116 AVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNN 175
AVK LQ KG+ AQMA+QQEQDPTNLYIANLP +FKE DLE++L+KY VVSTRILRD
Sbjct: 286 AVKGLQGKGVQAQMAKQQEQDPTNLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQQM 345
Query: 176 TSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRGAGAGGPNIYRGP 235
SKGVGFAR+ES++KC+Q+IQ+FNG+T+PG+K+PLLVKFAD G KK+ N+++ P
Sbjct: 346 NSKGVGFARMESREKCEQIIQMFNGNTIPGAKDPLLVKFADGGPKKK-------NLFKTP 398
Query: 236 GAEVRLWGRDSADS-QLAYEHPM----------TPIPATIQYQRFTAGPGGTGHIPAGYT 284
R W SA+ +AY+ M TPI + Y RF+A G P +
Sbjct: 399 DPNARAWRDVSAEGIPVAYDPTMQQNGVSVNVGTPI--GVPYSRFSA--PQVGGYPVAGS 454
Query: 285 PWVP 288
W+P
Sbjct: 455 QWIP 458
>sp|B4KX02|SHEP_DROMO Protein alan shepard OS=Drosophila mojavensis GN=shep PE=3 SV=1
Length = 592
Score = 273 bits (698), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 151/269 (56%), Positives = 183/269 (68%), Gaps = 35/269 (13%)
Query: 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALA 115
LSKTNLYIRGL Q TTDKDLINMC+QYG IISTKAILDKTTNKC+GYGFVDFE YA
Sbjct: 226 LSKTNLYIRGLQQGTTDKDLINMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAYAEG 285
Query: 116 AVKALQDKGIHAQMAR-----------QQEQDPTNLYIANLPLNFKECDLESLLAKYVTV 164
AVK LQ KG+ AQMA+ QQEQDPTNLYIANLP +FKE DLE++LAK+ V
Sbjct: 286 AVKGLQAKGVQAQMAKVGIWVLHRPAIQQEQDPTNLYIANLPPHFKETDLEAMLAKFGQV 345
Query: 165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRGA 224
VSTRILRD SKGVGFAR+ES++KC+Q+IQ+FNG+T+ G+K+PLLVKFAD G KK+
Sbjct: 346 VSTRILRDQQMNSKGVGFARMESREKCEQIIQMFNGNTITGAKDPLLVKFADGGPKKK-- 403
Query: 225 GAGGPNIYRGPGAEVRLWGRDSADS-QLAYEHPM----------TPIPATIQYQRFTAGP 273
N+++ P R W SA+ +AY+ M TPI + Y RF G
Sbjct: 404 -----NLFKTPDPNARAWRDVSAEGIPVAYDPTMQQNGVSVNVGTPI--GVPYSRF--GA 454
Query: 274 GGTGHIPAGYTPWVPTQYVMPAPHMSQVE 302
G P + W+P Y+M P ++QV+
Sbjct: 455 PQVGGYPVAGSQWIPG-YMMTQP-ITQVD 481
>sp|B3M3R5|SHEP_DROAN Protein alan shepard OS=Drosophila ananassae GN=shep PE=3 SV=2
Length = 597
Score = 263 bits (672), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 147/269 (54%), Positives = 182/269 (67%), Gaps = 37/269 (13%)
Query: 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALA 115
LSKTNLYIRGL Q TTDKDL+NMC+QYG IISTKAILDKTTNKC YGFVDFE +A
Sbjct: 233 LSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKC--YGFVDFEQPAFAEC 290
Query: 116 AVKALQDKGIHAQMAR-----------QQEQDPTNLYIANLPLNFKECDLESLLAKYVTV 164
AVK LQ KG+ AQMA+ QQEQDPTNLYIANLP ++KE DLE++L+KY V
Sbjct: 291 AVKGLQGKGVQAQMAKVGIWVLHRPAIQQEQDPTNLYIANLPPHYKETDLEAMLSKYGQV 350
Query: 165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRGA 224
VSTRILRD SKGVGFAR+ES++KC+Q+IQ+FNG+T+PG K+PLLVKFAD G KK+
Sbjct: 351 VSTRILRDQQMNSKGVGFARMESREKCEQIIQMFNGNTIPGGKDPLLVKFADGGPKKK-- 408
Query: 225 GAGGPNIYRGPGAEVRLWGRDSADS-QLAYEHPM----------TPIPATIQYQRFTAGP 273
N+++ P R W SA+ +AY+ + TPI + Y RF+A
Sbjct: 409 -----NLFKTPDPNARAWRDVSAEGIPVAYDPTLQQNGVSVNVGTPI--GVPYSRFSA-- 459
Query: 274 GGTGHIPAGYTPWVPTQYVMPAPHMSQVE 302
G P + W+P Y+M P ++QV+
Sbjct: 460 PQVGGYPVAGSQWIPG-YMMTQP-ITQVD 486
>sp|Q3ZBP3|RBMS1_BOVIN RNA-binding motif, single-stranded-interacting protein 1 OS=Bos
taurus GN=RBMS1 PE=2 SV=1
Length = 403
Score = 226 bits (577), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 125/221 (56%), Positives = 152/221 (68%), Gaps = 18/221 (8%)
Query: 52 GPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGG 111
G +QLSKTNLYIRGL +TTD+DL+ +C YG I+STKAILDKTTNKC+GYGFVDF+S
Sbjct: 55 GWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPA 114
Query: 112 YALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILR 171
A AV AL+ G+ AQMA+QQEQDPTNLYI+NLPL+ E +LE++L + V+STRILR
Sbjct: 115 AAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILR 174
Query: 172 DNNNTSKGVGFARLESKDKCDQMIQLFNG---STLPGSK---EPLLVKFADSGLKKRGAG 225
D++ TS+GVGFAR+ES +KC+ +I FNG T PG EPLL KFAD G KKR
Sbjct: 175 DSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKR--- 231
Query: 226 AGGPNIYRGPGAEVRLWGRD-SADSQLAYEHPMTPIPATIQ 265
PN Y G R W R+ A L Y+ P A IQ
Sbjct: 232 -QNPNKYIPNG---RPWHREGEAGMTLTYD----PTTAAIQ 264
>sp|P29558|RBMS1_HUMAN RNA-binding motif, single-stranded-interacting protein 1 OS=Homo
sapiens GN=RBMS1 PE=1 SV=3
Length = 406
Score = 226 bits (575), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 118/200 (59%), Positives = 143/200 (71%), Gaps = 13/200 (6%)
Query: 52 GPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGG 111
G +QLSKTNLYIRGL TTD+DL+ +C YG I+STKAILDKTTNKC+GYGFVDF+S
Sbjct: 55 GWDQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPA 114
Query: 112 YALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILR 171
A AV AL+ G+ AQMA+QQEQDPTNLYI+NLPL+ E +LE++L + V+STRILR
Sbjct: 115 AAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILR 174
Query: 172 DNNNTSKGVGFARLESKDKCDQMIQLFNG---STLPGSK---EPLLVKFADSGLKKRGAG 225
D++ TS+GVGFAR+ES +KC+ +I FNG T PG EPLL KFAD G KKR
Sbjct: 175 DSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKR--- 231
Query: 226 AGGPNIYRGPGAEVRLWGRD 245
PN Y G R W R+
Sbjct: 232 -QNPNKYIPNG---RPWHRE 247
>sp|Q5PQP1|RBMS1_RAT RNA-binding motif, single-stranded-interacting protein 1 OS=Rattus
norvegicus GN=Rbms1 PE=2 SV=1
Length = 403
Score = 224 bits (570), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 116/200 (58%), Positives = 143/200 (71%), Gaps = 13/200 (6%)
Query: 52 GPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGG 111
G +QLSKTNLYIRGL +TTD+DL+ +C YG I+STKAILDK TNKC+GYGFVDF+S
Sbjct: 55 GWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPA 114
Query: 112 YALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILR 171
A AV AL+ G+ AQMA+QQEQDPTNLYI+NLPL+ E +LE++L + V+STR+LR
Sbjct: 115 AAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRVLR 174
Query: 172 DNNNTSKGVGFARLESKDKCDQMIQLFNG---STLPGSK---EPLLVKFADSGLKKRGAG 225
D++ TS+GVGFAR+ES +KC+ +I FNG T PG EPLL KFAD G KKR
Sbjct: 175 DSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKR--- 231
Query: 226 AGGPNIYRGPGAEVRLWGRD 245
PN Y G R W R+
Sbjct: 232 -QNPNKYIPNG---RPWPRE 247
>sp|Q5RBD3|RBMS3_PONAB RNA-binding motif, single-stranded-interacting protein 3 OS=Pongo
abelii GN=RBMS3 PE=2 SV=1
Length = 436
Score = 223 bits (569), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 108/175 (61%), Positives = 131/175 (74%), Gaps = 6/175 (3%)
Query: 54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYA 113
EQLSKTNLYIRGL TTD+DLI +C YG I+STKAILDK TN+C+GYGFVDF+S A
Sbjct: 55 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAA 114
Query: 114 LAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN 173
AV +L+ G+ AQMA+QQEQDPTNLYI+NLP++ E +LE++L + V+STRILRD
Sbjct: 115 QKAVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDA 174
Query: 174 NNTSKGVGFARLESKDKCDQMIQLFNGSTL------PGSKEPLLVKFADSGLKKR 222
N S+GVGFAR+ES +KC+ +IQ FNG L P EPLL KFAD G KKR
Sbjct: 175 NGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKR 229
>sp|Q6XE24|RBMS3_HUMAN RNA-binding motif, single-stranded-interacting protein 3 OS=Homo
sapiens GN=RBMS3 PE=1 SV=1
Length = 437
Score = 223 bits (569), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 108/175 (61%), Positives = 131/175 (74%), Gaps = 6/175 (3%)
Query: 54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYA 113
EQLSKTNLYIRGL TTD+DLI +C YG I+STKAILDK TN+C+GYGFVDF+S A
Sbjct: 56 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAA 115
Query: 114 LAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN 173
AV +L+ G+ AQMA+QQEQDPTNLYI+NLP++ E +LE++L + V+STRILRD
Sbjct: 116 QKAVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDA 175
Query: 174 NNTSKGVGFARLESKDKCDQMIQLFNGSTL------PGSKEPLLVKFADSGLKKR 222
N S+GVGFAR+ES +KC+ +IQ FNG L P EPLL KFAD G KKR
Sbjct: 176 NGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKR 230
>sp|Q91W59|RBMS1_MOUSE RNA-binding motif, single-stranded-interacting protein 1 OS=Mus
musculus GN=Rbms1 PE=2 SV=1
Length = 403
Score = 223 bits (569), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 116/200 (58%), Positives = 142/200 (71%), Gaps = 13/200 (6%)
Query: 52 GPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGG 111
G +QLSKTNLYIRGL +TTD+DL+ +C YG I+STKAILDK TNKC+GYGFVDF+S
Sbjct: 55 GWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPA 114
Query: 112 YALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILR 171
A AV AL+ G+ AQMA+QQEQDPTNLYI+NLPL+ E +LE++L + V+STR+LR
Sbjct: 115 AAQKAVSALKANGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRVLR 174
Query: 172 DNNNTSKGVGFARLESKDKCDQMIQLFNG---STLPGSK---EPLLVKFADSGLKKRGAG 225
D++ S+GVGFAR+ES +KC+ +I FNG T PG EPLL KFAD G KKR
Sbjct: 175 DSSGASRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKR--- 231
Query: 226 AGGPNIYRGPGAEVRLWGRD 245
PN Y G R W RD
Sbjct: 232 -QNPNKYIPNG---RPWPRD 247
>sp|Q3ZC34|RBMS2_BOVIN RNA-binding motif, single-stranded-interacting protein 2 OS=Bos
taurus GN=RBMS2 PE=2 SV=1
Length = 407
Score = 223 bits (568), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 108/178 (60%), Positives = 132/178 (74%), Gaps = 6/178 (3%)
Query: 51 TGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESG 110
T +QLSKTNLYIRGL TTD+DL+ +C YG I+STKAILDKTTNKC+GYGFVDF+S
Sbjct: 48 TAHDQLSKTNLYIRGLQPSTTDQDLVKLCQSYGKIVSTKAILDKTTNKCKGYGFVDFDSP 107
Query: 111 GYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRIL 170
A AV AL+ G+ AQMA+QQEQDPTNLYI+NLPL+ E +LE +L + V+STRIL
Sbjct: 108 SAAQKAVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRIL 167
Query: 171 RDNNNTSKGVGFARLESKDKCDQMIQLFNGSTL------PGSKEPLLVKFADSGLKKR 222
RD + TS+GVGFAR+ES +KC+ +I FNG + P +PLL KFAD G KKR
Sbjct: 168 RDTSGTSRGVGFARMESTEKCEAIITHFNGKYIKTPPGVPAPSDPLLCKFADGGPKKR 225
>sp|Q8BWL5|RBMS3_MOUSE RNA-binding motif, single-stranded-interacting protein 3 OS=Mus
musculus GN=Rbms3 PE=2 SV=2
Length = 431
Score = 223 bits (568), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 108/175 (61%), Positives = 131/175 (74%), Gaps = 6/175 (3%)
Query: 54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYA 113
EQLSKTNLYIRGL TTD+DLI +C YG I+STKAILDK TN+C+GYGFVDF+S A
Sbjct: 51 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAA 110
Query: 114 LAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN 173
AV +L+ G+ AQMA+QQEQDPTNLYI+NLP++ E +LE++L + V+STRILRD
Sbjct: 111 QKAVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDA 170
Query: 174 NNTSKGVGFARLESKDKCDQMIQLFNGSTL------PGSKEPLLVKFADSGLKKR 222
N S+GVGFAR+ES +KC+ +IQ FNG L P EPLL KFAD G KKR
Sbjct: 171 NGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKR 225
>sp|Q15434|RBMS2_HUMAN RNA-binding motif, single-stranded-interacting protein 2 OS=Homo
sapiens GN=RBMS2 PE=1 SV=1
Length = 407
Score = 221 bits (564), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 108/177 (61%), Positives = 132/177 (74%), Gaps = 6/177 (3%)
Query: 52 GPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGG 111
G +QLSKTNLYIRGL TTD+DL+ +C YG I+STKAILDKTTNKC+GYGFVDF+S
Sbjct: 49 GNDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPS 108
Query: 112 YALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILR 171
A AV AL+ G+ AQMA+QQEQDPTNLYI+NLPL+ E +LE +L + V+STRILR
Sbjct: 109 AAQKAVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILR 168
Query: 172 DNNNTSKGVGFARLESKDKCDQMIQLFNGSTL------PGSKEPLLVKFADSGLKKR 222
D + TS+GVGFAR+ES +KC+ +I FNG + P +PLL KFAD G KKR
Sbjct: 169 DTSGTSRGVGFARMESTEKCEAIITHFNGKYIKTPPGVPAPSDPLLCKFADGGPKKR 225
>sp|Q8VC70|RBMS2_MOUSE RNA-binding motif, single-stranded-interacting protein 2 OS=Mus
musculus GN=Rbms2 PE=2 SV=1
Length = 383
Score = 218 bits (555), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 108/175 (61%), Positives = 131/175 (74%), Gaps = 6/175 (3%)
Query: 54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYA 113
+QLSKTNLYIRGL TTD+DL+ +C YG I+STKAILDKTTNKC+GYGFVDF+S A
Sbjct: 53 DQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSSA 112
Query: 114 LAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN 173
AV AL+ G+ AQMA+QQEQDPTNLYI+NLPL+ E +LE +L + V+STRILRD
Sbjct: 113 QKAVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDT 172
Query: 174 NNTSKGVGFARLESKDKCDQMIQLFNG---STLPG---SKEPLLVKFADSGLKKR 222
+ S+GVGFAR+ES +KC+ +I FNG T PG +PLL KFAD G KKR
Sbjct: 173 SGASRGVGFARMESTEKCEAIITHFNGKYIKTPPGVAAPSDPLLCKFADGGPKKR 227
>sp|Q2L4W6|SPO5_SCHPO Sporulation-specific protein 5 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=spo5 PE=1 SV=1
Length = 567
Score = 137 bits (346), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 116/199 (58%), Gaps = 20/199 (10%)
Query: 54 EQLSKT-NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGY 112
E S+T N+YIRGL +T+D++L+ +++G + S+KAI+D TN C+GYGF FE
Sbjct: 290 ESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEKS 349
Query: 113 ALAAVKALQDKGIHAQMARQ---------QEQDPTNLYIANLPLNFKECDLESLLAKYVT 163
AL + A+ G A++ Q+ + TNLYI+NLPL++ E D+ +L K
Sbjct: 350 ALICISAMTLCGYQCSFAKESFSARLQSLQDTESTNLYISNLPLHWNESDISTLF-KPSK 408
Query: 164 VVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRG 223
++S R+LRD+ S+GVGFAR++ + + +I FN L + PL ++FADS +K+
Sbjct: 409 IISNRVLRDSKEQSRGVGFARMQDRKTAEDIINKFNNFVLDPALPPLQIRFADSTDQKK- 467
Query: 224 AGAGGPNIYRGPGAEVRLW 242
++G + RLW
Sbjct: 468 --------FKGQTQKRRLW 478
>sp|Q60899|ELAV2_MOUSE ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1
Length = 360
Score = 101 bits (251), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 86/272 (31%), Positives = 125/272 (45%), Gaps = 17/272 (6%)
Query: 30 NGGTHPITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTK 89
N P T NN N S +G + SKTNL + L Q+ T ++L ++ G I S K
Sbjct: 13 NTANGPTTVNN---NCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCK 69
Query: 90 AILDKTTNKCRGYGFVDFESGGYALAAVKA-----LQDKGIHAQMARQQEQD--PTNLYI 142
+ DK T + GYGFV++ A A+ LQ K I AR NLY+
Sbjct: 70 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYV 129
Query: 143 ANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGS 201
+ LP + +LE L ++Y ++++RIL D S+GVGF R + + + ++ I+ NG
Sbjct: 130 SGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Query: 202 TLPGSKEPLLVKFADSGLKKRGAGA-----GGPN-IYRGPGAEVRLWGRDSADSQLAYEH 255
PG+ EP+ VKFA++ +K PN Y GP A+ R +AY
Sbjct: 190 KPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGV 249
Query: 256 PMTPIPATIQYQRFTAGPGGTGHIPAGYTPWV 287
P TI AG GH G+ +V
Sbjct: 250 KSRFSPMTIDGMTSLAGINIPGHPGTGWCIFV 281
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKAL 120
+++ L D + L M +G + + K I D TNKC+G+GFV + A A+ +L
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 140 LYIANLPLNFKECDLESLLAKYVTVVSTRILRD-NNNTSKGVGFARLESKDKCDQMIQLF 198
+++ NL + E L + + V + +++RD N N KG GF + + D+ I
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 199 NGSTL 203
NG L
Sbjct: 339 NGYRL 343
>sp|Q5R9Z6|ELAV2_PONAB ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1
Length = 359
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 85/272 (31%), Positives = 126/272 (46%), Gaps = 18/272 (6%)
Query: 30 NGGTHPITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTK 89
N P T NN N S +G + SKTNL + L Q+ T ++L ++ G I S K
Sbjct: 13 NTANGPTTINN---NCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCK 69
Query: 90 AILDKTTNKCRGYGFVDFESGGYALAAVKA-----LQDKGIHAQMARQQEQD--PTNLYI 142
+ DK T + GYGFV++ A A+ LQ K I AR NLY+
Sbjct: 70 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYV 129
Query: 143 ANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGS 201
+ LP + +LE L ++Y ++++RIL D S+GVGF R + + + ++ I+ NG
Sbjct: 130 SGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Query: 202 TLPGSKEPLLVKFADSGLKKRGAGA-----GGPNIYRGPGAEVRLWGRDSADSQLAYEHP 256
PG+ EP+ VKFA++ +K PN R PG + R D+ L +
Sbjct: 190 KPPGATEPITVKFANNPSQKTNQAILSQLYQSPN-RRYPGPLAQQAQRFRLDNLLNMAYG 248
Query: 257 MTPI-PATIQYQRFTAGPGGTGHIPAGYTPWV 287
+ P TI AG GH G+ +V
Sbjct: 249 VKRFSPMTIDGMTSLAGINIPGHPGTGWCIFV 280
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKAL 120
+++ L D + L M +G + + K I D TNKC+G+GFV + A A+ +L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 140 LYIANLPLNFKECDLESLLAKYVTVVSTRILRD-NNNTSKGVGFARLESKDKCDQMIQLF 198
+++ NL + E L + + V + +++RD N N KG GF + + D+ I
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 199 NGSTL 203
NG L
Sbjct: 338 NGYRL 342
>sp|Q12926|ELAV2_HUMAN ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2
Length = 359
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 85/272 (31%), Positives = 126/272 (46%), Gaps = 18/272 (6%)
Query: 30 NGGTHPITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTK 89
N P T NN N S +G + SKTNL + L Q+ T ++L ++ G I S K
Sbjct: 13 NTANGPTTINN---NCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCK 69
Query: 90 AILDKTTNKCRGYGFVDFESGGYALAAVKA-----LQDKGIHAQMARQQEQD--PTNLYI 142
+ DK T + GYGFV++ A A+ LQ K I AR NLY+
Sbjct: 70 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYV 129
Query: 143 ANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGS 201
+ LP + +LE L ++Y ++++RIL D S+GVGF R + + + ++ I+ NG
Sbjct: 130 SGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Query: 202 TLPGSKEPLLVKFADSGLKKRGAGA-----GGPNIYRGPGAEVRLWGRDSADSQLAYEHP 256
PG+ EP+ VKFA++ +K PN R PG + R D+ L +
Sbjct: 190 KPPGATEPITVKFANNPSQKTNQAILSQLYQSPN-RRYPGPLAQQAQRFRLDNLLNMAYG 248
Query: 257 MTPI-PATIQYQRFTAGPGGTGHIPAGYTPWV 287
+ P TI AG GH G+ +V
Sbjct: 249 VKRFSPMTIDGMTSLAGINIPGHPGTGWCIFV 280
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKAL 120
+++ L D + L M +G + + K I D TNKC+G+GFV + A A+ +L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 140 LYIANLPLNFKECDLESLLAKYVTVVSTRILRD-NNNTSKGVGFARLESKDKCDQMIQLF 198
+++ NL + E L + + V + +++RD N N KG GF + + D+ I
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 199 NGSTL 203
NG L
Sbjct: 338 NGYRL 342
>sp|Q28GD4|ELAV2_XENTR ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2
Length = 375
Score = 98.2 bits (243), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 108/218 (49%), Gaps = 10/218 (4%)
Query: 10 SNATSPANTHSSSSSNTGSQNGGTHPITTN--NVQHNGSPGTPTGPEQLSKTNLYIRGLT 67
S A P ++ T NG T T N N +N S + + SKTNL + L
Sbjct: 16 SWAAEPWTGQVIAAMETQLSNGPTCNNTANCPNTINNCSSPVESSNTEDSKTNLIVNYLP 75
Query: 68 QDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA-----LQD 122
Q+ T ++L ++ G I S K + DK T + GYGFV++ A A+ LQ
Sbjct: 76 QNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT 135
Query: 123 KGIHAQMARQQEQD--PTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKG 179
K I AR NLY++ LP + +LE L ++Y ++++RIL D S+G
Sbjct: 136 KTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRG 195
Query: 180 VGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADS 217
VGF R + + + ++ I+ NG PG+ EP+ VKFA++
Sbjct: 196 VGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANN 233
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKAL 120
+++ L D + L M +G + + K I D TNKC+G+GFV + A A+ +L
Sbjct: 294 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 353
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 140 LYIANLPLNFKECDLESLLAKYVTVVSTRILRD-NNNTSKGVGFARLESKDKCDQMIQLF 198
+++ NL + E L + + V + +++RD N N KG GF + + D+ I
Sbjct: 294 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 353
Query: 199 NGSTL 203
NG L
Sbjct: 354 NGYRL 358
>sp|Q8CH84|ELAV2_RAT ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1
Length = 359
Score = 98.2 bits (243), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 85/272 (31%), Positives = 125/272 (45%), Gaps = 18/272 (6%)
Query: 30 NGGTHPITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTK 89
N P T NN N S +G + SKTNL L Q+ T ++L ++ G I S K
Sbjct: 13 NTANGPTTVNN---NCSSPVDSGNTEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCK 69
Query: 90 AILDKTTNKCRGYGFVDFESGGYALAAVKA-----LQDKGIHAQMARQQEQD--PTNLYI 142
+ DK T + GYGFV++ A A+ LQ K I AR NLY+
Sbjct: 70 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYV 129
Query: 143 ANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGS 201
+ LP + +LE L ++Y ++++RIL D S+GVGF R + + + ++ I+ NG
Sbjct: 130 SGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Query: 202 TLPGSKEPLLVKFADSGLKKRGAGA-----GGPNIYRGPGAEVRLWGRDSADSQLAYEHP 256
PG+ EP+ VKFA++ +K PN R PG + R D+ L +
Sbjct: 190 KPPGATEPITVKFANNPSQKTNQAILSQLYQSPN-RRYPGPLAQQAQRFRLDNLLNMAYG 248
Query: 257 MTPI-PATIQYQRFTAGPGGTGHIPAGYTPWV 287
+ P TI AG GH G+ +V
Sbjct: 249 VKRFSPMTIDGMTSLAGINIPGHPGTGWCIFV 280
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKAL 120
+++ L D + L M +G + + K I D TNKC+G+GFV + A A+ +L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 140 LYIANLPLNFKECDLESLLAKYVTVVSTRILRD-NNNTSKGVGFARLESKDKCDQMIQLF 198
+++ NL + E L + + V + +++RD N N KG GF + + D+ I
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 199 NGSTL 203
NG L
Sbjct: 338 NGYRL 342
>sp|P70372|ELAV1_MOUSE ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=2
Length = 326
Score = 98.2 bits (243), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 90/170 (52%), Gaps = 8/170 (4%)
Query: 54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYA 113
+ + +TNL + L Q+ T ++L ++ S G + S K I DK GYGFV++ + A
Sbjct: 15 DDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDA 74
Query: 114 LAAVKA-----LQDKGIHAQMARQQEQ--DPTNLYIANLPLNFKECDLESLLAKYVTVVS 166
A+ LQ K I AR + NLYI+ LP + D+E + +++ +++
Sbjct: 75 ERAISTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIIN 134
Query: 167 TRILRDNNN-TSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFA 215
+R+L D S+GV F R + + + ++ I FNG PGS EP+ VKFA
Sbjct: 135 SRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA 184
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFV---DFESGGYALAAV 117
++I L QD + L M +G + + K I D TNKC+G+GFV ++E A+A++
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
>sp|O01671|SXL_MEGSC Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE=2 SV=3
Length = 321
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 92/183 (50%), Gaps = 10/183 (5%)
Query: 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAA 116
S TNL + L QD D++L ++ GPI + + + D T GYGFVDF S AL A
Sbjct: 76 SGTNLIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRA 135
Query: 117 VKAL-----QDKGIHAQMAR---QQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTR 168
+ L ++K I AR +Q +D TNLY+ NL + + LE++ KY +V
Sbjct: 136 INNLNGITVRNKRIKVSFARPGGEQLRD-TNLYVTNLSRSITDEQLETIFGKYGQIVQKN 194
Query: 169 ILRDNNN-TSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRGAGAG 227
ILRD + T +GV F R +++ + I N G +PL V+ A+ K +G
Sbjct: 195 ILRDKHTGTPRGVAFIRFNKREEAQEAISALNNVIPEGGTQPLTVRVAEEHGKSKGHVYM 254
Query: 228 GPN 230
PN
Sbjct: 255 APN 257
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%)
Query: 52 GPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGG 111
G EQL TNLY+ L++ TD+ L + +YG I+ + DK T RG F+ F
Sbjct: 157 GGEQLRDTNLYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKRE 216
Query: 112 YALAAVKALQD 122
A A+ AL +
Sbjct: 217 EAQEAISALNN 227
>sp|Q15717|ELAV1_HUMAN ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2
Length = 326
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 88/168 (52%), Gaps = 8/168 (4%)
Query: 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALA 115
+ +TNL + L Q+ T +L ++ S G + S K I DK GYGFV++ + A
Sbjct: 17 IGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAER 76
Query: 116 AVKA-----LQDKGIHAQMARQQEQ--DPTNLYIANLPLNFKECDLESLLAKYVTVVSTR 168
A+ LQ K I AR + NLYI+ LP + D+E + +++ ++++R
Sbjct: 77 AINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSR 136
Query: 169 ILRDNNN-TSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFA 215
+L D S+GV F R + + + ++ I FNG PGS EP+ VKFA
Sbjct: 137 VLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA 184
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYA 113
E + NLYI GL + T KD+ +M S++G II+++ ++D+TT RG F+ F+ A
Sbjct: 101 EVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEA 160
Query: 114 LAAVKAL 120
A+ +
Sbjct: 161 EEAITSF 167
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFV---DFESGGYALAAV 117
++I L QD + L M +G + + K I D TNKC+G+GFV ++E A+A++
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
>sp|Q91584|ELAV3_XENLA ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1
Length = 348
Score = 95.9 bits (237), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 101/202 (50%), Gaps = 14/202 (6%)
Query: 36 ITTNNVQHNGSPGT------PTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTK 89
I+T Q N PG G SKTNL + L Q+ T ++ ++ G I S K
Sbjct: 5 ISTMETQANNGPGCVGILNGTNGEADDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCK 64
Query: 90 AILDKTTNKCRGYGFVDFESGGYALAAVKA-----LQDKGIHAQMARQQEQD--PTNLYI 142
+ DK T + GYGFV++ A A+ LQ K I AR NLY+
Sbjct: 65 LVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYV 124
Query: 143 ANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGS 201
++LP + ++E L ++Y ++++RIL D S+GVGF R + + + ++ I+ NG
Sbjct: 125 SSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 184
Query: 202 TLPGSKEPLLVKFADSGLKKRG 223
G+ EP+ VKFA++ +K G
Sbjct: 185 KPLGASEPITVKFANNPSQKTG 206
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 35 PITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDK 94
PIT ++V N + + TGP + +++ L+ + + L + +G + + K I D
Sbjct: 243 PITIDSVT-NLAGVSLTGPTT-AGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDF 300
Query: 95 TTNKCRGYGFVDFESGGYALAAVKAL 120
TTNKC+G+GFV + A A+ +L
Sbjct: 301 TTNKCKGFGFVTMTNYDEAAMAIASL 326
>sp|Q28FX0|ELAV3_XENTR ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1
Length = 343
Score = 95.5 bits (236), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 104/206 (50%), Gaps = 15/206 (7%)
Query: 33 THPITTNNVQHNGSPGT------PTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPII 86
T I+T Q + PG+ G SKTNL + L Q+ T ++ ++ G I
Sbjct: 3 TQIISTMETQASNGPGSVGILNGTNGAADDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIE 62
Query: 87 STKAILDKTTNKCRGYGFVDFESGGYALAAVKA-----LQDKGIHAQMARQQEQD--PTN 139
S K + DK T + GYGFV++ A A+ LQ K I AR N
Sbjct: 63 SCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDAN 122
Query: 140 LYIANLPLNFKECDLESLLAKYVTVVSTRILRDN--NNTSKGVGFARLESKDKCDQMIQL 197
LY+++LP + ++E L ++Y ++++RIL D + S+GVGF R + + + ++ I+
Sbjct: 123 LYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGSVSRGVGFIRFDKRIEAEEAIKG 182
Query: 198 FNGSTLPGSKEPLLVKFADSGLKKRG 223
NG G+ EP+ VKFA++ +K G
Sbjct: 183 LNGQKPLGASEPITVKFANNPSQKTG 208
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 35 PITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDK 94
PIT ++V N + + TGP +++ L+ + + L + +G + + K I D
Sbjct: 238 PITIDSVT-NLAGVSLTGPTTAGWC-IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDF 295
Query: 95 TTNKCRGYGFVDFESGGYALAAVKAL 120
TTNKC+G+GFV + A A+ +L
Sbjct: 296 TTNKCKGFGFVTMTNYDEAAMAIASL 321
>sp|Q6GLB5|ELAV1_XENTR ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl1 PE=2 SV=1
Length = 326
Score = 94.7 bits (234), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 88/170 (51%), Gaps = 8/170 (4%)
Query: 54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYA 113
+ + +TNL + L Q+ T +L ++ S G + S K I DK GYGFV++ + A
Sbjct: 15 DDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDA 74
Query: 114 LAAVKA-----LQDKGIHAQMAR--QQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVS 166
A+ LQ K I +AR + NLYI+ LP + D+E + + +++
Sbjct: 75 ERAINTLNGLRLQSKTIKVSVARPSSESIKDANLYISGLPRTMTQKDVEDMFLPFGRIIN 134
Query: 167 TRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFA 215
+R+L D S+GV F R + + + ++ I FNG PGS EP+ VKFA
Sbjct: 135 SRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFA 184
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFV---DFESGGYALAAV 117
++I L QD + L M +G + + K I D TNKC+G+GFV ++E A+A++
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
>sp|Q5U259|ELV1B_XENLA ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-b PE=1 SV=1
Length = 326
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 87/170 (51%), Gaps = 8/170 (4%)
Query: 54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYA 113
+ + +TNL + L Q+ T +L ++ S G + S K I DK GYGFV++ + A
Sbjct: 15 DDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDA 74
Query: 114 LAAVKA-----LQDKGIHAQMARQQEQ--DPTNLYIANLPLNFKECDLESLLAKYVTVVS 166
A+ LQ K I AR + NLYI+ LP + D+E + + +++
Sbjct: 75 ERAINTLNGLRLQSKTIKVSFARPSSETIKDANLYISGLPRTMTQKDVEDMFLPFGHIIN 134
Query: 167 TRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFA 215
+R+L D S+GV F R + + + ++ I FNG PGS EP+ VKFA
Sbjct: 135 SRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFA 184
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFV---DFESGGYALAAV 117
++I L QD + L M +G + + K I D TNKC+G+GFV ++E A+A++
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
>sp|O09032|ELAV4_RAT ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1
Length = 373
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 91/173 (52%), Gaps = 8/173 (4%)
Query: 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAA 116
SKTNL + L Q+ T ++ ++ G I S K + DK T + GYGFV++ A A
Sbjct: 37 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 96
Query: 117 VKA-----LQDKGIHAQMARQQEQD--PTNLYIANLPLNFKECDLESLLAKYVTVVSTRI 169
+ LQ K I AR NLY++ LP + +LE L ++Y ++++RI
Sbjct: 97 INTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 156
Query: 170 LRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKK 221
L D S+GVGF R + + + ++ I+ NG G+ EP+ VKFA++ +K
Sbjct: 157 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQK 209
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKAL 120
+++ L+ D+ + L + +G + + K I D TNKC+G+GFV + A A+ +L
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 140 LYIANLPLNFKECDLESLLAKYVTVVSTRILRD-NNNTSKGVGFARLESKDKCDQMIQLF 198
+++ NL + E L L + V + +++RD N N KG GF + + D+ I
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 199 NGSTL 203
NG L
Sbjct: 352 NGYRL 356
>sp|P26378|ELAV4_HUMAN ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2
Length = 380
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 91/173 (52%), Gaps = 8/173 (4%)
Query: 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAA 116
SKTNL + L Q+ T ++ ++ G I S K + DK T + GYGFV++ A A
Sbjct: 44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 103
Query: 117 VKA-----LQDKGIHAQMARQQEQD--PTNLYIANLPLNFKECDLESLLAKYVTVVSTRI 169
+ LQ K I AR NLY++ LP + +LE L ++Y ++++RI
Sbjct: 104 INTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 163
Query: 170 LRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKK 221
L D S+GVGF R + + + ++ I+ NG G+ EP+ VKFA++ +K
Sbjct: 164 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQK 216
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKAL 120
+++ L+ D+ + L + +G + + K I D TNKC+G+GFV + A A+ +L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 140 LYIANLPLNFKECDLESLLAKYVTVVSTRILRD-NNNTSKGVGFARLESKDKCDQMIQLF 198
+++ NL + E L L + V + +++RD N N KG GF + + D+ I
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 199 NGSTL 203
NG L
Sbjct: 359 NGYRL 363
>sp|O97018|SXL_CHRRU Sex-lethal homolog OS=Chrysomya rufifacies GN=SXL PE=2 SV=2
Length = 307
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 98/209 (46%), Gaps = 12/209 (5%)
Query: 17 NTHSSSSSNTGSQNGGTHPITTNNVQHNGSPGTPTGPEQ-LSKTNLYIRGLTQDTTDKDL 75
N S S GS I+TN+V S G G Q + TNL + L QD TD++L
Sbjct: 45 NDFSGGGSAMGSMCNMAPAISTNSVN---SGGGDCGDNQGCNGTNLIVNYLPQDMTDREL 101
Query: 76 INMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKAL-----QDKGIHAQMA 130
+ GPI + + + D T GY FVDF S A A+K+L ++K + A
Sbjct: 102 YALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSLNGVTVRNKRLKVSYA 161
Query: 131 R--QQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLES 187
R + TNLY+ NLP + +LE + KY +V ILRD +GV F R
Sbjct: 162 RPGGESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNK 221
Query: 188 KDKCDQMIQLFNGSTLPGSKEPLLVKFAD 216
+++ + I N G+ +PL V+ A+
Sbjct: 222 REEAQEAISALNNVIPEGASQPLTVRLAE 250
Score = 34.7 bits (78), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 10/127 (7%)
Query: 100 RGYGFVDFESGGYALAAV----KALQDKGIHA---QMARQQEQDPTNLYIANLPLNFKEC 152
RG G+ DF GG A+ ++ A+ +++ Q + TNL + LP + +
Sbjct: 40 RGGGYNDFSGGGSAMGSMCNMAPAISTNSVNSGGGDCGDNQGCNGTNLIVNYLPQDMTDR 99
Query: 153 DLESLLAKYVTVVSTRILRD-NNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLL 211
+L +L + + RI++D S G F S+ I+ NG T+ + L
Sbjct: 100 ELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSLNGVTVRNKR--LK 157
Query: 212 VKFADSG 218
V +A G
Sbjct: 158 VSYARPG 164
>sp|Q61701|ELAV4_MOUSE ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1
Length = 385
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 91/173 (52%), Gaps = 8/173 (4%)
Query: 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAA 116
SKTNL + L Q+ T ++ ++ G I S K + DK T + GYGFV++ A A
Sbjct: 49 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 108
Query: 117 VKA-----LQDKGIHAQMARQQEQD--PTNLYIANLPLNFKECDLESLLAKYVTVVSTRI 169
+ LQ K I AR NLY++ LP + +LE L ++Y ++++RI
Sbjct: 109 INTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 168
Query: 170 LRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKK 221
L D S+GVGF R + + + ++ I+ NG G+ EP+ VKFA++ +K
Sbjct: 169 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQK 221
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKAL 120
+++ L+ D+ + L + +G + + K I D TNKC+G+GFV + A A+ +L
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 140 LYIANLPLNFKECDLESLLAKYVTVVSTRILRD-NNNTSKGVGFARLESKDKCDQMIQLF 198
+++ NL + E L L + V + +++RD N N KG GF + + D+ I
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 199 NGSTL 203
NG L
Sbjct: 364 NGYRL 368
>sp|Q60900|ELAV3_MOUSE ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1
Length = 367
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 95/192 (49%), Gaps = 15/192 (7%)
Query: 47 PGTPTGP-------EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKC 99
P P GP SKTNL + L Q+ T + ++ G I S K + DK T +
Sbjct: 20 PALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQS 79
Query: 100 RGYGFVDFESGGYALAAVKA-----LQDKGIHAQMARQQEQD--PTNLYIANLPLNFKEC 152
GYGFV++ A A+ LQ K I AR NLY++ LP +
Sbjct: 80 LGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQK 139
Query: 153 DLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLL 211
++E L ++Y ++++RIL D S+GVGF R + + + ++ I+ NG G+ EP+
Sbjct: 140 EMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPIT 199
Query: 212 VKFADSGLKKRG 223
VKFA++ +K G
Sbjct: 200 VKFANNPSQKTG 211
Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKAL 120
+++ L+ + + L + +G + + K I D TTNKC+G+GFV + A A+ +L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
>sp|Q14576|ELAV3_HUMAN ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3
Length = 367
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 95/192 (49%), Gaps = 15/192 (7%)
Query: 47 PGTPTGP-------EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKC 99
P P GP SKTNL + L Q+ T + ++ G I S K + DK T +
Sbjct: 20 PALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQS 79
Query: 100 RGYGFVDFESGGYALAAVKA-----LQDKGIHAQMARQQEQD--PTNLYIANLPLNFKEC 152
GYGFV++ A A+ LQ K I AR NLY++ LP +
Sbjct: 80 LGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQK 139
Query: 153 DLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLL 211
++E L ++Y ++++RIL D S+GVGF R + + + ++ I+ NG G+ EP+
Sbjct: 140 EMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPIT 199
Query: 212 VKFADSGLKKRG 223
VKFA++ +K G
Sbjct: 200 VKFANNPSQKTG 211
Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKAL 120
+++ L+ + + L + +G + + K I D TTNKC+G+GFV + A A+ +L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
>sp|Q91903|ELAV2_XENLA ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2
Length = 389
Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 107/219 (48%), Gaps = 12/219 (5%)
Query: 10 SNATSPANTHSSSSSNTGSQNGGTHPITTN--NVQHNGSPGTPTGPEQLSKTNLYIRGLT 67
S A P ++ T NG T T N N + SP E SKTNL + L
Sbjct: 16 SWAAEPWTGQVIAAMETQLSNGPTCNNTANCPNTINCSSPVESNNTED-SKTNLIVNYLP 74
Query: 68 QDTTDKDLINMCSQYGPIISTKAILDKTTN-KCRGYGFVDFESGGYALAAVKAL-----Q 121
Q+ T ++L ++ G I S K + DK T + GYGFV++ A A+ L Q
Sbjct: 75 QNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQ 134
Query: 122 DKGIHAQMARQQEQD--PTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSK 178
K I AR NLY++ LP + +LE L ++Y ++++RIL D S+
Sbjct: 135 TKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSR 194
Query: 179 GVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADS 217
GVGF R + + + ++ I+ NG PG+ EP+ VKFA++
Sbjct: 195 GVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANN 233
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKAL 120
+++ L D + L M +G + + K I D TNKC+G+GFV + A A+ +L
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 140 LYIANLPLNFKECDLESLLAKYVTVVSTRILRD-NNNTSKGVGFARLESKDKCDQMIQLF 198
+++ NL + E L + + V + +++RD N N KG GF + + D+ I
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 199 NGSTL 203
NG L
Sbjct: 368 NGYRL 372
>sp|Q24668|SXL_DROSU Protein sex-lethal OS=Drosophila subobscura GN=Sxl PE=2 SV=2
Length = 354
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 102/221 (46%), Gaps = 18/221 (8%)
Query: 22 SSSNTGSQNGGTHPITTNNVQHN------GSPGTP----TGPEQLSKTNLYIRGLTQDTT 71
S++N G P+T+NN N GS G+ ++ S TNL + L QD T
Sbjct: 80 SANNLGGNMCNLLPMTSNNSLSNLCGLSLGSGGSDDHMMMHDQRSSNTNLIVNYLPQDMT 139
Query: 72 DKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKAL-----QDKGIH 126
D++L + GPI + + + D T GY FVDF S + A+K L ++K +
Sbjct: 140 DRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLK 199
Query: 127 AQMAR--QQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFA 183
AR + TNLY+ NLP + L+++ KY ++V ILRD +GV F
Sbjct: 200 VSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFV 259
Query: 184 RLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRGA 224
R +++ + I N G +PL V+ A K + A
Sbjct: 260 RYNKREEAQEAISALNNVIPEGGSQPLSVRLAQEHGKAKAA 300
>sp|O17310|SXL_MUSDO Sex-lethal homolog OS=Musca domestica GN=SXL PE=2 SV=1
Length = 324
Score = 88.6 bits (218), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 8/171 (4%)
Query: 54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYA 113
+ ++ TNL + L QD TD++L + GPI + + + D T GY FVDF S A
Sbjct: 97 QAVNGTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDA 156
Query: 114 LAAVK-----ALQDKGIHAQMAR--QQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVS 166
A+K +++K + AR + TNLY+ NLP + +LE + KY +V
Sbjct: 157 QNAIKTVNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQ 216
Query: 167 TRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFAD 216
ILRD +GV F R +++ + I N G+ +PL V+ A+
Sbjct: 217 KNILRDKLTGRPRGVAFVRFNKREEAQEAISALNNVIPEGASQPLTVRLAE 267
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 36 ITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKT 95
IT N + S P G E + TNLY+ L + TD +L + +YG I+ + DK
Sbjct: 166 ITVRNKRLKVSYARPGG-ESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKL 224
Query: 96 TNKCRGYGFVDFESGGYALAAVKALQD 122
T + RG FV F A A+ AL +
Sbjct: 225 TGRPRGVAFVRFNKREEAQEAISALNN 251
>sp|P19339|SXL_DROME Protein sex-lethal OS=Drosophila melanogaster GN=Sxl PE=1 SV=1
Length = 354
Score = 88.6 bits (218), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 97/206 (47%), Gaps = 16/206 (7%)
Query: 35 PITTNNVQHN------GSPGTP--TGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPII 86
P+ +NN +N GS G+ + S TNL + L QD TD++L + GPI
Sbjct: 93 PMASNNSLNNLCGLSLGSGGSDDLMNDPRASNTNLIVNYLPQDMTDRELYALFRAIGPIN 152
Query: 87 STKAILDKTTNKCRGYGFVDFESGGYALAAVKAL-----QDKGIHAQMARQ--QEQDPTN 139
+ + + D T GY FVDF S + A+K L ++K + AR + TN
Sbjct: 153 TCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTN 212
Query: 140 LYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLF 198
LY+ NLP + L+++ KY ++V ILRD +GV F R +++ + I
Sbjct: 213 LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISAL 272
Query: 199 NGSTLPGSKEPLLVKFADSGLKKRGA 224
N G +PL V+ A+ K + A
Sbjct: 273 NNVIPEGGSQPLSVRLAEEHGKAKAA 298
>sp|O61374|SXL_CERCA Sex-lethal homolog OS=Ceratitis capitata GN=SXL PE=2 SV=2
Length = 348
Score = 87.8 bits (216), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 94/198 (47%), Gaps = 8/198 (4%)
Query: 27 GSQNGGTHPITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPII 86
GS N + +TN++ G G + TNL + L QD TD++L + GPI
Sbjct: 78 GSMNNMVNAASTNSLNCGGGGGRDGHGGGSNGTNLIVNYLPQDMTDRELYALFRTIGPIN 137
Query: 87 STKAILDKTTNKCRGYGFVDFESGGYALAAVKAL-----QDKGIHAQMAR--QQEQDPTN 139
+ + + D T GY FVDF + + A+K+L ++K + AR + TN
Sbjct: 138 TCRIMRDYKTGYSFGYAFVDFAAETDSQRAIKSLNGITVRNKRLKVSYARPGGESIKDTN 197
Query: 140 LYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLF 198
LY+ NLP + L+++ KY +V ILRD +GV F R +++ + I
Sbjct: 198 LYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAISAL 257
Query: 199 NGSTLPGSKEPLLVKFAD 216
N G+ +PL V+ A+
Sbjct: 258 NNVIPEGASQPLTVRLAE 275
>sp|Q1JQ73|ELV1A_XENLA ELAV-like protein 1-A OS=Xenopus laevis GN=elavl1-a PE=1 SV=1
Length = 337
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 88/181 (48%), Gaps = 19/181 (10%)
Query: 54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDK-----------TTNKCRGY 102
+ + +TNL + L Q+ T +L ++ S G + S K I DK + GY
Sbjct: 15 DDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGY 74
Query: 103 GFVDFESGGYALAAVKAL-----QDKGIHAQMAR--QQEQDPTNLYIANLPLNFKECDLE 155
GFV++ + A A+ L Q K I AR + NLYI+ LP + D+E
Sbjct: 75 GFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSESIKDANLYISGLPRTMTQKDVE 134
Query: 156 SLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKF 214
+ + ++++R+L D S+GV F R + + + ++ I FNG PGS EP+ VKF
Sbjct: 135 DMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKF 194
Query: 215 A 215
A
Sbjct: 195 A 195
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFV---DFESGGYALAAV 117
+++ L QD + L M +G + + K I D TNKC+G+GFV ++E A+A++
Sbjct: 257 IFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 316
>sp|P16914|ELAV_DROME Protein elav OS=Drosophila melanogaster GN=elav PE=2 SV=1
Length = 483
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 108/221 (48%), Gaps = 41/221 (18%)
Query: 19 HSSSSSNTGSQNGGTHPITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINM 78
+++ ++ +GSQNG NGS T +TNL + L Q T+ ++ ++
Sbjct: 128 NTNGNAGSGSQNG-----------SNGSTET--------RTNLIVNYLPQTMTEDEIRSL 168
Query: 79 CSQYGPIISTKAILDKT-------------TNKCRGYGFVDFESGGYALAAVKAL----- 120
S G I S K I DK+ + GYGFV++ A AV L
Sbjct: 169 FSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRL 228
Query: 121 QDKGIHAQMARQQEQ--DPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRD--NNNT 176
Q+K I AR NLY++ LP + +LE++ A + ++++RIL++ N+
Sbjct: 229 QNKTIKVSFARPSSDAIKGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQ 288
Query: 177 SKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADS 217
+KGVGF R + +++ + I NG+T +P++VKF+++
Sbjct: 289 TKGVGFIRFDKREEATRAIIALNGTTPSSCTDPIVVKFSNT 329
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKAL 120
++I L +T + L + +G + S K + D TTN+C+GYGFV + A A++AL
Sbjct: 404 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 463
Score = 36.2 bits (82), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 140 LYIANLPLNFKECDLESLLAKYVTVVSTRILRD-NNNTSKGVGFARLESKDKCDQMIQLF 198
++I NL +E L L + V S +I++D N KG GF + + D+ I+
Sbjct: 404 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 463
Query: 199 NGSTL 203
NG T+
Sbjct: 464 NGYTM 468
>sp|P23241|ELAV_DROVI Protein elav OS=Drosophila virilis GN=elav PE=3 SV=1
Length = 519
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 99/197 (50%), Gaps = 27/197 (13%)
Query: 43 HNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKT------- 95
NGS G+ ++TNL + L Q T+ ++ ++ S G I S K I DK+
Sbjct: 174 QNGSNGSTE-----TRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPL 228
Query: 96 ------TNKCRGYGFVDFESGGYALAAVKAL-----QDKGIHAQMARQQEQ--DPTNLYI 142
+ GYGFV++ A AV L Q+K I AR NLY+
Sbjct: 229 NPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYV 288
Query: 143 ANLPLNFKECDLESLLAKYVTVVSTRILRD--NNNTSKGVGFARLESKDKCDQMIQLFNG 200
+ LP + +LE++ A + ++++RIL++ N+ +KGVGF R + +++ + I NG
Sbjct: 289 SGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNG 348
Query: 201 STLPGSKEPLLVKFADS 217
+T +P++VKF+++
Sbjct: 349 TTPSSCTDPIVVKFSNT 365
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKAL 120
++I L +T + L + +G + S K + D TTN+C+GYGFV + A A++AL
Sbjct: 440 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 499
Score = 35.8 bits (81), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 140 LYIANLPLNFKECDLESLLAKYVTVVSTRILRD-NNNTSKGVGFARLESKDKCDQMIQLF 198
++I NL +E L L + V S +I++D N KG GF + + D+ I+
Sbjct: 440 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 499
Query: 199 NGSTL 203
NG T+
Sbjct: 500 NGYTM 504
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 91/189 (48%), Gaps = 28/189 (14%)
Query: 59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVK 118
TN+Y++ L + TTD DL N +YG I S ++ K +G+GFV+FE+ A AV+
Sbjct: 215 TNVYVKNLAESTTDDDLKNAFGEYGKITSA-VVMKDGEGKSKGFGFVNFENADDAARAVE 273
Query: 119 AL-----QDKGIHAQMARQQEQDPT--------------------NLYIANLPLNFKECD 153
+L DK + A+++ + T NLY+ NL + +
Sbjct: 274 SLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEK 333
Query: 154 LESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVK 213
L+ + + + TV S++++RD N TSKG GF + ++ + + +G + +PL V
Sbjct: 334 LKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMI--ESKPLYVA 391
Query: 214 FADSGLKKR 222
A +R
Sbjct: 392 IAQRKEDRR 400
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 14/183 (7%)
Query: 30 NGGTHPITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTK 89
NG T +T+ G+ T Q T+LY+ L + TD L + Q G +++ +
Sbjct: 12 NGSTAAVTSAPATSGGATAT-----QFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVR 66
Query: 90 AILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR--QQEQDPT-------NL 140
D T + GYG+V+F + A A++ L ++ + R +DP+ N+
Sbjct: 67 VCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNI 126
Query: 141 YIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNG 200
+I NL + L + + +VS ++ D++ SKG GF + +++ + I+ NG
Sbjct: 127 FIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNG 186
Query: 201 STL 203
L
Sbjct: 187 MLL 189
Score = 37.7 bits (86), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYA 113
++ +NLY++ L +D+ L + S +G + S+K + D +G GFV F + A
Sbjct: 313 DKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRD-PNGTSKGSGFVAFATPEEA 371
Query: 114 LAAV-----KALQDKGIHAQMARQQEQDPTNL 140
A+ K ++ K ++ +A+++E L
Sbjct: 372 TEAMSQLSGKMIESKPLYVAIAQRKEDRRVRL 403
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 78.6 bits (192), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 91/183 (49%), Gaps = 30/183 (16%)
Query: 59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTN-KCRGYGFVDFESGGYALAAV 117
TNLY++ + +TTD+ + +++GPI+S A L+K + K +G+GFV++E A+ AV
Sbjct: 219 TNLYVKNINSETTDEQFQELFAKFGPIVS--ASLEKDADGKLKGFGFVNYEKHEDAVKAV 276
Query: 118 KALQDKGIHAQ---MARQQEQDP----------------------TNLYIANLPLNFKEC 152
+AL D ++ + + R Q+++ NL++ NL + +
Sbjct: 277 EALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDE 336
Query: 153 DLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLV 212
LE A Y T+ S +++R N SKG GF + ++ + I N + G +PL V
Sbjct: 337 KLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAG--KPLYV 394
Query: 213 KFA 215
A
Sbjct: 395 AIA 397
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 16/163 (9%)
Query: 60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
N++I+ L D +K L + S +G I+S+K D+ K +G+GFV FE G A A+ A
Sbjct: 127 NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDEN-GKSKGFGFVHFEEEGAAKEAIDA 185
Query: 120 L-------QDKGIHAQMARQQEQDP--------TNLYIANLPLNFKECDLESLLAKYVTV 164
L Q+ + ++R++ TNLY+ N+ + + L AK+ +
Sbjct: 186 LNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPI 245
Query: 165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSK 207
VS + +D + KG GF E + + ++ N S L G K
Sbjct: 246 VSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEK 288
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 75/175 (42%), Gaps = 9/175 (5%)
Query: 42 QHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRG 101
Q + G+ + + S +LY+ L ++ L ++ S G + S + D T G
Sbjct: 21 QKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLG 80
Query: 102 YGFVDFESGGYALAAVKALQDKGIHAQMAR--QQEQDPT-------NLYIANLPLNFKEC 152
Y +V+F A++ L I ++ R ++DP+ N++I NL +
Sbjct: 81 YAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNK 140
Query: 153 DLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSK 207
L + + ++S++I D N SKG GF E + + I NG L G +
Sbjct: 141 ALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQE 195
Score = 32.0 bits (71), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Query: 134 EQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCD 192
E +LY+ +L + E L + + +V S R+ RD TS G + +
Sbjct: 34 ENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGR 93
Query: 193 QMIQLFNGSTLPGSKEPLLVKFADSGLKKRGAG 225
+ I+ N + + G ++ D L+K+G+G
Sbjct: 94 KAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSG 126
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 78.2 bits (191), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 83/161 (51%), Gaps = 17/161 (10%)
Query: 60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
N++I+ L +K L + S +G I+S K D+ + RG+GFV FE+ A A+
Sbjct: 100 NIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDE--HGSRGFGFVHFETHEAAQQAINT 157
Query: 120 -----LQDKGI---HAQMARQQEQDP-------TNLYIANLPLNFKECDLESLLAKYVTV 164
L D+ + H + R++E + TN+Y+ NLP++ E L+ L +++ +
Sbjct: 158 MNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKM 217
Query: 165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPG 205
+S +++RDN+ S+ GF E ++ + + NG + G
Sbjct: 218 LSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSG 258
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 88/197 (44%), Gaps = 29/197 (14%)
Query: 52 GPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGG 111
G L TN+Y++ L D ++ L ++ SQ+G ++S K + D + + R +GFV+FE
Sbjct: 184 GARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHS-RCFGFVNFEKHE 242
Query: 112 YALAAVKALQDKGIHAQMA-------------------RQQEQDP------TNLYIANLP 146
A AV + K + ++ Q +QD NLY+ NL
Sbjct: 243 EAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLD 302
Query: 147 LNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGS 206
+ + L + Y + S +++ + + SKG GF S ++ + + NG + G+
Sbjct: 303 DSIDDDKLRKEFSPYGVITSAKVMTEGGH-SKGFGFVCFSSPEEATKAVTEMNGRIV-GT 360
Query: 207 KEPLLVKFADSGLKKRG 223
K PL V A +++
Sbjct: 361 K-PLYVALAQRKEERKA 376
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 69/157 (43%), Gaps = 10/157 (6%)
Query: 60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
+LY+ L D T+ L S GPI+S + D T + GY +++F+ A A+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 120 LQDKGIHAQMAR--QQEQDP-------TNLYIANLPLNFKECDLESLLAKYVTVVSTRIL 170
+ + + Q R ++DP N++I NL + L + + ++S ++
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVA 131
Query: 171 RDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSK 207
D + S+G GF E+ + Q I NG L K
Sbjct: 132 CDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRK 167
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.131 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 124,265,195
Number of Sequences: 539616
Number of extensions: 5690952
Number of successful extensions: 17301
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 225
Number of HSP's that attempted gapping in prelim test: 15153
Number of HSP's gapped (non-prelim): 1690
length of query: 305
length of database: 191,569,459
effective HSP length: 117
effective length of query: 188
effective length of database: 128,434,387
effective search space: 24145664756
effective search space used: 24145664756
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)