Query psy4086
Match_columns 305
No_of_seqs 304 out of 3160
Neff 9.2
Searched_HMMs 46136
Date Sat Aug 17 00:56:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4086.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4086hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 7.4E-39 1.6E-43 287.0 28.4 171 52-222 101-279 (346)
2 KOG0148|consensus 100.0 3.2E-35 6.9E-40 242.8 20.4 154 58-218 62-238 (321)
3 KOG0144|consensus 100.0 2.5E-35 5.5E-40 257.3 15.7 167 56-222 32-210 (510)
4 TIGR01645 half-pint poly-U bin 100.0 5.1E-33 1.1E-37 261.8 20.8 163 57-221 106-287 (612)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 7.1E-33 1.5E-37 252.4 20.8 164 57-220 2-173 (352)
6 KOG0117|consensus 100.0 1.5E-32 3.3E-37 241.0 21.7 172 42-222 67-335 (506)
7 KOG0145|consensus 100.0 9.1E-33 2E-37 227.1 16.5 168 55-222 38-213 (360)
8 TIGR01628 PABP-1234 polyadenyl 100.0 2E-31 4.4E-36 256.8 27.2 163 56-221 176-367 (562)
9 TIGR01648 hnRNP-R-Q heterogene 100.0 7.3E-31 1.6E-35 246.9 24.8 165 46-220 46-309 (578)
10 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.8E-31 8.3E-36 241.0 21.0 162 57-220 88-351 (352)
11 TIGR01622 SF-CC1 splicing fact 100.0 2.3E-30 5E-35 243.8 23.9 161 55-218 86-266 (457)
12 TIGR01628 PABP-1234 polyadenyl 100.0 4.1E-30 8.9E-35 247.7 19.3 156 60-217 2-166 (562)
13 KOG0131|consensus 100.0 2E-28 4.2E-33 191.7 12.6 163 57-221 8-180 (203)
14 KOG0145|consensus 99.9 3.9E-27 8.5E-32 193.9 14.7 164 53-218 122-358 (360)
15 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 1.6E-26 3.5E-31 218.1 20.0 156 56-217 273-479 (481)
16 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 2.3E-26 4.9E-31 217.0 19.4 152 58-218 2-174 (481)
17 KOG0109|consensus 99.9 1.8E-27 4E-32 198.8 10.3 145 60-221 4-153 (346)
18 TIGR01642 U2AF_lg U2 snRNP aux 99.9 3.7E-26 8E-31 218.1 19.1 155 55-218 172-375 (509)
19 KOG0127|consensus 99.9 2.1E-26 4.6E-31 206.8 16.2 160 59-220 6-198 (678)
20 TIGR01642 U2AF_lg U2 snRNP aux 99.9 7E-26 1.5E-30 216.2 19.5 159 57-217 294-501 (509)
21 KOG0146|consensus 99.9 4.2E-26 9.2E-31 188.5 12.0 163 57-222 18-369 (371)
22 TIGR01622 SF-CC1 splicing fact 99.9 2.9E-24 6.3E-29 202.4 19.1 155 58-217 186-447 (457)
23 KOG0124|consensus 99.9 6.2E-25 1.4E-29 188.8 10.9 159 58-218 113-290 (544)
24 KOG4205|consensus 99.9 3.8E-24 8.2E-29 186.8 15.3 163 57-222 5-180 (311)
25 KOG0127|consensus 99.9 3.9E-24 8.5E-29 192.3 15.4 158 58-218 117-378 (678)
26 KOG0144|consensus 99.9 1.3E-24 2.9E-29 190.4 11.0 160 57-219 123-505 (510)
27 KOG0123|consensus 99.9 1.1E-23 2.4E-28 190.1 16.4 153 60-222 3-157 (369)
28 KOG0148|consensus 99.9 1E-23 2.2E-28 174.8 11.3 142 56-222 4-146 (321)
29 TIGR01645 half-pint poly-U bin 99.9 3.2E-21 6.9E-26 182.2 18.7 75 57-131 203-277 (612)
30 KOG0110|consensus 99.9 1.1E-21 2.4E-26 181.8 12.8 161 57-219 514-694 (725)
31 KOG0147|consensus 99.9 2.5E-22 5.4E-27 181.5 8.2 166 49-217 170-357 (549)
32 KOG0123|consensus 99.9 3.1E-21 6.7E-26 174.3 14.0 155 60-219 78-247 (369)
33 KOG0105|consensus 99.8 6.7E-20 1.5E-24 144.1 15.9 140 57-205 5-177 (241)
34 PLN03134 glycine-rich RNA-bind 99.8 9.7E-20 2.1E-24 144.0 14.0 87 134-222 31-118 (144)
35 KOG0147|consensus 99.8 1.6E-19 3.5E-24 163.4 11.2 151 61-217 281-527 (549)
36 KOG4212|consensus 99.8 7.3E-18 1.6E-22 148.5 19.8 159 57-218 43-294 (608)
37 PLN03134 glycine-rich RNA-bind 99.7 1.1E-17 2.4E-22 132.3 11.2 75 56-130 32-106 (144)
38 KOG4206|consensus 99.7 6.5E-17 1.4E-21 132.0 15.4 150 59-216 10-220 (221)
39 KOG1548|consensus 99.7 2.1E-16 4.5E-21 135.8 18.4 163 50-218 126-352 (382)
40 KOG4211|consensus 99.7 3.5E-16 7.5E-21 140.2 16.4 153 59-217 11-181 (510)
41 KOG0110|consensus 99.7 1.3E-16 2.8E-21 148.4 13.9 155 54-216 381-596 (725)
42 KOG1457|consensus 99.7 1.8E-16 3.8E-21 128.5 12.4 145 58-205 34-275 (284)
43 KOG0149|consensus 99.7 2.5E-17 5.4E-22 134.8 6.7 73 55-127 9-85 (247)
44 KOG0124|consensus 99.7 7.6E-16 1.6E-20 133.1 13.6 156 57-214 209-531 (544)
45 PF00076 RRM_1: RNA recognitio 99.7 2.8E-16 6E-21 108.7 8.2 70 61-131 1-70 (70)
46 KOG0149|consensus 99.7 2.7E-16 5.8E-21 128.8 9.2 78 137-217 12-90 (247)
47 TIGR01659 sex-lethal sex-letha 99.7 4.6E-16 1E-20 140.0 10.8 84 133-218 103-187 (346)
48 KOG0106|consensus 99.7 1.4E-16 3E-21 131.3 6.2 137 60-213 3-166 (216)
49 KOG0121|consensus 99.6 6.3E-16 1.4E-20 114.7 8.2 81 136-218 35-116 (153)
50 KOG4212|consensus 99.6 4E-15 8.7E-20 131.4 14.3 73 137-215 536-608 (608)
51 PF00076 RRM_1: RNA recognitio 99.6 8.1E-16 1.8E-20 106.4 8.0 70 140-211 1-70 (70)
52 KOG0122|consensus 99.6 3.3E-15 7E-20 122.9 11.9 76 55-130 186-261 (270)
53 KOG1190|consensus 99.6 6.4E-15 1.4E-19 129.1 14.3 151 58-217 297-490 (492)
54 KOG0122|consensus 99.6 1.8E-15 4E-20 124.3 9.3 82 135-218 187-269 (270)
55 TIGR01648 hnRNP-R-Q heterogene 99.6 4E-15 8.7E-20 140.8 11.8 104 109-213 18-133 (578)
56 KOG0107|consensus 99.6 5.7E-15 1.2E-19 115.6 10.4 80 136-221 9-88 (195)
57 KOG0125|consensus 99.6 1.9E-15 4.1E-20 129.0 8.0 84 132-218 91-174 (376)
58 PF14259 RRM_6: RNA recognitio 99.6 6E-15 1.3E-19 102.2 8.1 69 61-130 1-69 (70)
59 KOG0125|consensus 99.6 9.7E-15 2.1E-19 124.7 10.6 71 59-131 97-167 (376)
60 KOG0121|consensus 99.6 3.3E-15 7.1E-20 111.0 6.7 76 56-131 34-109 (153)
61 KOG0120|consensus 99.6 8.3E-15 1.8E-19 134.5 10.9 158 58-217 289-491 (500)
62 KOG4207|consensus 99.6 7.9E-15 1.7E-19 117.7 8.4 83 136-220 12-95 (256)
63 PLN03120 nucleic acid binding 99.6 1.6E-14 3.6E-19 122.2 10.3 77 137-218 4-80 (260)
64 KOG0113|consensus 99.6 1.4E-14 3E-19 122.4 9.3 82 56-137 99-180 (335)
65 COG0724 RNA-binding proteins ( 99.6 3.9E-14 8.4E-19 123.7 12.6 138 58-195 115-284 (306)
66 KOG0105|consensus 99.5 4E-14 8.8E-19 111.7 9.7 81 135-219 4-84 (241)
67 PF14259 RRM_6: RNA recognitio 99.5 2.4E-14 5.2E-19 99.2 7.6 70 140-211 1-70 (70)
68 KOG0126|consensus 99.5 5.7E-16 1.2E-20 121.8 -0.8 77 56-132 33-109 (219)
69 KOG0107|consensus 99.5 1.5E-14 3.2E-19 113.3 6.9 70 57-131 9-78 (195)
70 KOG0117|consensus 99.5 7.5E-14 1.6E-18 123.8 11.7 109 108-217 42-163 (506)
71 KOG0129|consensus 99.5 6.9E-13 1.5E-17 120.0 16.8 144 53-197 254-432 (520)
72 KOG0113|consensus 99.5 1E-13 2.2E-18 117.2 10.3 82 135-218 99-181 (335)
73 PLN03120 nucleic acid binding 99.5 5.6E-14 1.2E-18 119.0 8.7 70 58-131 4-73 (260)
74 KOG1365|consensus 99.5 8E-13 1.7E-17 115.2 14.6 157 58-217 161-361 (508)
75 KOG0126|consensus 99.5 5.1E-15 1.1E-19 116.5 -0.3 101 115-217 8-114 (219)
76 KOG4207|consensus 99.5 9.5E-14 2.1E-18 111.5 6.6 78 54-131 9-86 (256)
77 KOG0114|consensus 99.5 3.9E-13 8.5E-18 96.3 8.7 74 55-131 15-88 (124)
78 smart00362 RRM_2 RNA recogniti 99.5 4.5E-13 9.9E-18 92.2 8.8 71 139-212 1-71 (72)
79 KOG4454|consensus 99.5 2E-14 4.4E-19 116.3 1.9 140 58-205 9-152 (267)
80 KOG1190|consensus 99.4 4.1E-13 8.8E-18 117.9 10.0 152 57-217 27-227 (492)
81 KOG0146|consensus 99.4 1.7E-13 3.8E-18 114.1 7.1 99 123-221 3-104 (371)
82 PLN03121 nucleic acid binding 99.4 6.5E-13 1.4E-17 110.8 10.2 78 136-218 4-81 (243)
83 smart00362 RRM_2 RNA recogniti 99.4 6.6E-13 1.4E-17 91.4 8.6 69 60-130 1-69 (72)
84 KOG0111|consensus 99.4 7.4E-14 1.6E-18 113.1 4.3 85 136-222 9-94 (298)
85 PLN03213 repressor of silencin 99.4 4E-13 8.7E-18 120.6 9.3 79 135-218 8-88 (759)
86 PLN03213 repressor of silencin 99.4 4.4E-13 9.5E-18 120.3 9.1 73 55-131 7-81 (759)
87 PLN03121 nucleic acid binding 99.4 5.2E-13 1.1E-17 111.4 8.6 70 58-131 5-74 (243)
88 KOG0108|consensus 99.4 3.8E-13 8.3E-18 122.9 8.3 83 138-222 19-102 (435)
89 KOG0108|consensus 99.4 1.4E-13 3.1E-18 125.7 4.8 73 59-131 19-91 (435)
90 smart00360 RRM RNA recognition 99.4 1.2E-12 2.6E-17 89.8 7.8 68 63-130 1-68 (71)
91 KOG0132|consensus 99.4 3.9E-11 8.4E-16 113.2 20.1 69 56-130 419-487 (894)
92 smart00360 RRM RNA recognition 99.4 1.9E-12 4.1E-17 88.7 8.4 69 142-212 1-70 (71)
93 KOG0130|consensus 99.4 1.8E-12 3.9E-17 97.3 8.3 83 136-220 71-154 (170)
94 KOG0131|consensus 99.4 7.6E-13 1.7E-17 104.4 6.5 81 135-217 7-88 (203)
95 KOG1456|consensus 99.4 2.7E-10 5.9E-15 99.3 22.7 152 59-220 32-201 (494)
96 KOG0114|consensus 99.4 3.1E-12 6.6E-17 91.7 8.7 78 137-218 18-95 (124)
97 cd00590 RRM RRM (RNA recogniti 99.4 5.7E-12 1.2E-16 87.1 9.8 74 139-214 1-74 (74)
98 KOG1456|consensus 99.3 1.2E-10 2.6E-15 101.5 18.5 158 53-216 282-487 (494)
99 KOG0226|consensus 99.3 2.5E-12 5.3E-17 106.6 7.5 156 60-218 98-270 (290)
100 COG0724 RNA-binding proteins ( 99.3 4.5E-12 9.9E-17 110.6 9.7 79 137-217 115-194 (306)
101 KOG0132|consensus 99.3 4E-11 8.6E-16 113.1 16.0 78 137-221 421-498 (894)
102 KOG0111|consensus 99.3 1.2E-12 2.5E-17 106.2 4.3 99 57-155 9-108 (298)
103 KOG0109|consensus 99.3 2.3E-12 5E-17 108.7 5.8 73 138-219 3-75 (346)
104 KOG0120|consensus 99.3 4.3E-12 9.4E-17 116.8 7.9 156 57-221 174-372 (500)
105 cd00590 RRM RRM (RNA recogniti 99.3 1.8E-11 3.9E-16 84.6 8.9 70 60-130 1-70 (74)
106 KOG4211|consensus 99.3 2.3E-10 5E-15 103.2 17.9 145 58-205 103-347 (510)
107 KOG0130|consensus 99.3 6.2E-12 1.3E-16 94.4 6.4 76 55-130 69-144 (170)
108 KOG4210|consensus 99.3 7.4E-12 1.6E-16 109.5 7.9 162 57-221 87-267 (285)
109 KOG0128|consensus 99.3 8.6E-13 1.9E-17 125.5 1.8 149 57-217 666-814 (881)
110 PF13893 RRM_5: RNA recognitio 99.3 1.4E-11 3.1E-16 81.2 7.1 56 154-215 1-56 (56)
111 smart00361 RRM_1 RNA recogniti 99.3 1.5E-11 3.2E-16 85.1 7.0 60 72-131 2-68 (70)
112 smart00361 RRM_1 RNA recogniti 99.3 1.8E-11 3.9E-16 84.6 7.4 60 151-212 2-69 (70)
113 KOG0112|consensus 99.3 5.6E-12 1.2E-16 120.5 5.7 162 52-219 366-532 (975)
114 KOG0415|consensus 99.1 7.7E-11 1.7E-15 102.0 6.4 84 135-220 237-321 (479)
115 KOG4206|consensus 99.1 2.3E-10 5E-15 93.9 7.9 79 138-220 10-92 (221)
116 KOG4208|consensus 99.1 4.9E-10 1.1E-14 90.5 7.6 81 50-130 41-122 (214)
117 KOG4661|consensus 99.0 1.4E-09 2.9E-14 99.7 10.5 77 55-131 402-478 (940)
118 PF13893 RRM_5: RNA recognitio 99.0 7E-10 1.5E-14 73.1 6.5 52 75-131 1-52 (56)
119 KOG0116|consensus 99.0 2E-09 4.3E-14 98.2 11.4 81 138-221 289-370 (419)
120 KOG4208|consensus 99.0 9.3E-10 2E-14 88.9 8.0 82 135-218 47-130 (214)
121 KOG0153|consensus 99.0 1.2E-09 2.5E-14 94.7 8.9 79 132-217 223-302 (377)
122 KOG4660|consensus 99.0 1.3E-09 2.9E-14 99.8 7.1 151 53-217 70-249 (549)
123 KOG4849|consensus 98.9 1.3E-08 2.8E-13 88.3 12.0 89 125-214 68-159 (498)
124 KOG0415|consensus 98.9 1E-09 2.2E-14 95.2 5.3 73 59-131 240-312 (479)
125 KOG4205|consensus 98.9 9.7E-10 2.1E-14 96.7 5.2 82 136-220 5-87 (311)
126 KOG0533|consensus 98.9 4.8E-09 1E-13 88.8 9.1 86 134-221 80-165 (243)
127 KOG4307|consensus 98.9 1.3E-08 2.9E-13 95.3 12.3 74 138-213 868-942 (944)
128 KOG0533|consensus 98.9 5.3E-09 1.1E-13 88.6 7.9 79 54-133 79-157 (243)
129 KOG0153|consensus 98.9 4.7E-09 1E-13 91.0 6.6 77 50-132 220-302 (377)
130 KOG1457|consensus 98.9 2.1E-08 4.5E-13 82.0 9.6 86 137-222 34-122 (284)
131 PF04059 RRM_2: RNA recognitio 98.8 2E-08 4.3E-13 73.1 8.3 70 58-127 1-72 (97)
132 KOG0226|consensus 98.8 6E-09 1.3E-13 86.7 5.3 75 57-131 189-263 (290)
133 KOG2193|consensus 98.8 1.1E-09 2.4E-14 97.0 0.8 148 60-218 3-157 (584)
134 KOG4454|consensus 98.8 3.1E-09 6.8E-14 86.5 2.8 80 136-218 8-87 (267)
135 KOG0106|consensus 98.8 7.9E-09 1.7E-13 85.6 4.9 76 138-222 2-77 (216)
136 KOG4661|consensus 98.7 3.8E-08 8.3E-13 90.4 7.5 80 137-218 405-485 (940)
137 KOG4209|consensus 98.7 5.4E-08 1.2E-12 82.6 7.8 84 132-218 96-180 (231)
138 KOG1365|consensus 98.7 2.4E-07 5.2E-12 81.5 11.8 142 56-197 58-225 (508)
139 KOG4209|consensus 98.6 3.7E-08 8.1E-13 83.6 5.0 77 54-131 97-173 (231)
140 KOG4307|consensus 98.6 1E-07 2.3E-12 89.4 7.7 156 56-214 309-510 (944)
141 KOG0116|consensus 98.6 1.2E-07 2.7E-12 86.6 7.7 63 57-119 287-349 (419)
142 KOG4660|consensus 98.6 7.5E-08 1.6E-12 88.5 5.5 75 131-211 69-143 (549)
143 KOG1548|consensus 98.6 2.7E-07 5.9E-12 80.2 8.3 80 137-218 134-221 (382)
144 KOG0151|consensus 98.5 1.8E-07 3.8E-12 88.2 6.1 80 136-217 173-256 (877)
145 PF04059 RRM_2: RNA recognitio 98.5 1.6E-06 3.5E-11 63.1 9.2 81 138-218 2-87 (97)
146 KOG4676|consensus 98.4 9.7E-08 2.1E-12 84.1 2.7 141 60-204 9-214 (479)
147 KOG0151|consensus 98.4 8.9E-07 1.9E-11 83.5 8.5 78 54-131 170-250 (877)
148 KOG4849|consensus 98.3 2.6E-05 5.6E-10 68.1 13.6 73 57-129 79-153 (498)
149 PF11608 Limkain-b1: Limkain b 98.2 1E-05 2.2E-10 56.3 8.3 69 138-217 3-76 (90)
150 KOG1995|consensus 98.1 7.3E-06 1.6E-10 72.0 7.6 83 135-219 64-155 (351)
151 KOG1995|consensus 98.0 8.9E-06 1.9E-10 71.5 5.3 78 55-132 63-148 (351)
152 PF08777 RRM_3: RNA binding mo 98.0 2.1E-05 4.6E-10 58.5 5.9 59 59-123 2-60 (105)
153 COG5175 MOT2 Transcriptional r 97.9 2.2E-05 4.8E-10 68.3 5.2 77 55-131 111-196 (480)
154 PF08777 RRM_3: RNA binding mo 97.8 5.1E-05 1.1E-09 56.5 6.2 59 138-201 2-60 (105)
155 KOG0115|consensus 97.8 6.8E-05 1.5E-09 63.0 7.1 107 111-217 5-113 (275)
156 KOG2314|consensus 97.8 4.4E-05 9.6E-10 70.7 6.5 78 137-215 58-141 (698)
157 KOG0128|consensus 97.8 2.1E-06 4.5E-11 82.8 -2.3 146 57-203 570-734 (881)
158 PF11608 Limkain-b1: Limkain b 97.8 0.00013 2.9E-09 50.8 7.1 62 59-130 3-69 (90)
159 PF14605 Nup35_RRM_2: Nup53/35 97.8 6.2E-05 1.4E-09 48.6 5.0 52 59-117 2-53 (53)
160 COG5175 MOT2 Transcriptional r 97.6 0.00021 4.6E-09 62.3 6.6 80 137-218 114-203 (480)
161 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00026 5.6E-09 45.7 5.4 52 138-195 2-53 (53)
162 KOG0129|consensus 97.5 0.0003 6.5E-09 64.8 7.2 63 57-119 369-432 (520)
163 KOG1855|consensus 97.5 0.00015 3.2E-09 65.2 5.0 67 135-201 229-309 (484)
164 KOG2314|consensus 97.5 0.00013 2.8E-09 67.7 4.7 68 58-127 58-132 (698)
165 KOG4210|consensus 97.4 9.5E-05 2.1E-09 65.0 2.9 69 61-130 188-256 (285)
166 KOG2202|consensus 97.3 0.00013 2.7E-09 61.5 2.6 64 152-217 83-147 (260)
167 KOG1996|consensus 97.3 0.00067 1.5E-08 58.2 6.7 65 151-217 300-366 (378)
168 PF05172 Nup35_RRM: Nup53/35/4 97.3 0.00076 1.6E-08 49.5 6.2 78 136-216 5-90 (100)
169 KOG3152|consensus 97.3 0.00021 4.7E-09 60.1 3.7 75 57-131 73-159 (278)
170 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.0015 3.3E-08 47.9 5.9 71 56-128 4-81 (100)
171 KOG3152|consensus 97.1 0.00055 1.2E-08 57.7 3.7 72 136-207 73-157 (278)
172 KOG0115|consensus 97.1 0.0017 3.6E-08 54.9 6.5 62 59-121 32-93 (275)
173 KOG1855|consensus 97.0 0.00097 2.1E-08 60.1 5.2 71 51-121 224-307 (484)
174 PF08675 RNA_bind: RNA binding 97.0 0.0053 1.2E-07 42.9 7.2 54 59-121 10-63 (87)
175 PF10309 DUF2414: Protein of u 97.0 0.0054 1.2E-07 40.6 6.8 54 58-120 5-62 (62)
176 PF10309 DUF2414: Protein of u 96.9 0.0069 1.5E-07 40.1 7.0 56 136-198 4-62 (62)
177 KOG2202|consensus 96.8 0.00053 1.1E-08 57.9 1.3 50 81-131 92-141 (260)
178 KOG2416|consensus 96.6 0.0024 5.2E-08 59.9 4.4 81 136-221 443-525 (718)
179 KOG2591|consensus 96.6 0.055 1.2E-06 50.7 12.6 73 121-199 158-233 (684)
180 PF08952 DUF1866: Domain of un 96.5 0.0072 1.6E-07 47.2 5.9 55 153-217 52-106 (146)
181 KOG2193|consensus 96.5 0.0026 5.6E-08 57.3 3.5 77 138-221 2-79 (584)
182 PF07576 BRAP2: BRCA1-associat 96.0 0.087 1.9E-06 39.4 9.0 65 61-127 16-81 (110)
183 PF07576 BRAP2: BRCA1-associat 95.7 0.11 2.4E-06 38.9 8.6 65 140-205 16-81 (110)
184 KOG0112|consensus 95.6 0.018 3.9E-07 56.7 5.1 67 54-126 451-517 (975)
185 KOG2068|consensus 95.6 0.015 3.2E-07 51.3 4.1 76 56-131 75-156 (327)
186 KOG1996|consensus 95.6 0.033 7.1E-07 48.1 6.1 60 72-131 300-360 (378)
187 PF03467 Smg4_UPF3: Smg-4/UPF3 95.6 0.014 3.1E-07 47.7 3.6 72 56-127 5-82 (176)
188 KOG2135|consensus 95.2 0.06 1.3E-06 49.5 6.6 71 139-217 374-445 (526)
189 KOG4574|consensus 95.0 0.02 4.3E-07 56.1 3.2 77 139-220 300-376 (1007)
190 PF10567 Nab6_mRNP_bdg: RNA-re 95.0 1.2 2.7E-05 38.8 13.7 149 51-199 8-212 (309)
191 PF03467 Smg4_UPF3: Smg-4/UPF3 94.8 0.034 7.3E-07 45.5 3.6 82 136-217 6-97 (176)
192 KOG4676|consensus 94.8 0.035 7.6E-07 49.8 3.9 77 138-217 8-89 (479)
193 PF15023 DUF4523: Protein of u 94.7 0.22 4.7E-06 38.6 7.5 75 133-216 82-160 (166)
194 KOG2591|consensus 94.5 0.11 2.5E-06 48.7 6.7 57 57-120 174-232 (684)
195 KOG2416|consensus 94.5 0.028 6E-07 53.0 2.8 64 58-127 444-508 (718)
196 PF08952 DUF1866: Domain of un 94.5 0.13 2.8E-06 40.3 6.0 53 74-135 52-104 (146)
197 KOG2068|consensus 94.3 0.019 4E-07 50.7 1.1 79 138-218 78-163 (327)
198 PF08675 RNA_bind: RNA binding 94.2 0.17 3.7E-06 35.5 5.5 54 139-199 10-63 (87)
199 PF04847 Calcipressin: Calcipr 94.1 0.13 2.9E-06 42.2 5.6 61 150-217 8-70 (184)
200 KOG2318|consensus 94.0 0.22 4.9E-06 47.0 7.6 131 56-217 172-307 (650)
201 KOG2253|consensus 94.0 0.016 3.5E-07 55.3 0.2 62 58-128 40-101 (668)
202 KOG4285|consensus 93.9 0.14 3E-06 44.6 5.5 78 138-223 198-275 (350)
203 KOG0804|consensus 93.4 0.33 7.2E-06 44.6 7.5 67 58-126 74-141 (493)
204 KOG4285|consensus 93.0 0.33 7.3E-06 42.3 6.5 64 57-128 196-259 (350)
205 PF07292 NID: Nmi/IFP 35 domai 92.8 0.086 1.9E-06 37.6 2.3 56 103-158 1-73 (88)
206 PF15023 DUF4523: Protein of u 92.4 0.29 6.3E-06 37.9 4.8 59 57-122 85-147 (166)
207 PF11767 SET_assoc: Histone ly 92.0 0.59 1.3E-05 31.5 5.4 50 148-205 11-60 (66)
208 KOG0804|consensus 91.4 0.72 1.6E-05 42.5 6.9 68 137-205 74-142 (493)
209 PF03880 DbpA: DbpA RNA bindin 91.0 1.4 3.1E-05 30.2 6.8 59 147-215 11-74 (74)
210 KOG2253|consensus 90.8 0.18 3.8E-06 48.5 2.5 72 133-214 36-107 (668)
211 KOG2135|consensus 89.7 0.14 3E-06 47.2 1.0 70 56-131 370-444 (526)
212 KOG4574|consensus 87.6 1.3 2.9E-05 43.9 6.0 60 61-126 301-360 (1007)
213 PF11767 SET_assoc: Histone ly 86.6 2.7 5.8E-05 28.3 5.3 50 69-127 11-60 (66)
214 PF04847 Calcipressin: Calcipr 86.0 1.8 3.8E-05 35.6 5.2 55 71-131 8-64 (184)
215 KOG2295|consensus 82.4 0.45 9.9E-06 44.8 0.3 77 56-132 229-305 (648)
216 KOG4410|consensus 81.5 6 0.00013 34.4 6.6 53 54-111 326-378 (396)
217 PF14111 DUF4283: Domain of un 79.5 4.1 9E-05 31.9 4.9 107 61-172 18-140 (153)
218 KOG4483|consensus 76.2 8.4 0.00018 35.2 6.2 56 57-119 390-446 (528)
219 COG5638 Uncharacterized conser 76.2 10 0.00022 34.7 6.7 40 178-217 258-297 (622)
220 KOG4410|consensus 74.3 9.3 0.0002 33.3 5.7 47 138-189 331-378 (396)
221 KOG2891|consensus 73.6 9.6 0.00021 33.1 5.7 36 136-171 148-195 (445)
222 PF03880 DbpA: DbpA RNA bindin 73.5 15 0.00032 25.1 5.7 54 69-131 12-70 (74)
223 PF02714 DUF221: Domain of unk 66.9 9.7 0.00021 34.1 4.7 57 103-160 1-57 (325)
224 PRK11634 ATP-dependent RNA hel 64.6 64 0.0014 32.1 10.2 61 148-218 498-563 (629)
225 KOG4019|consensus 63.2 7.5 0.00016 31.6 2.8 75 138-218 11-90 (193)
226 KOG2295|consensus 61.9 2.4 5.2E-05 40.2 -0.2 70 137-206 231-301 (648)
227 PF03468 XS: XS domain; Inter 60.6 18 0.00038 27.3 4.3 40 70-112 29-68 (116)
228 PF07292 NID: Nmi/IFP 35 domai 57.6 6 0.00013 28.3 1.2 26 55-80 49-74 (88)
229 PRK14548 50S ribosomal protein 57.4 53 0.0012 23.2 6.0 58 139-198 22-81 (84)
230 PRK14548 50S ribosomal protein 57.4 60 0.0013 23.0 6.2 57 61-120 23-81 (84)
231 TIGR03636 L23_arch archaeal ri 57.2 63 0.0014 22.4 6.3 57 61-120 16-74 (77)
232 KOG2236|consensus 56.9 1.3E+02 0.0029 28.3 10.0 182 75-303 247-461 (483)
233 PF15513 DUF4651: Domain of un 56.2 30 0.00066 22.8 4.2 20 152-171 9-28 (62)
234 TIGR03636 L23_arch archaeal ri 55.9 54 0.0012 22.7 5.8 58 139-198 15-74 (77)
235 PF02714 DUF221: Domain of unk 52.1 21 0.00046 31.9 4.2 34 181-218 1-34 (325)
236 KOG4483|consensus 51.3 63 0.0014 29.8 6.8 55 137-197 391-446 (528)
237 PF10567 Nab6_mRNP_bdg: RNA-re 49.9 32 0.00069 30.3 4.6 80 137-218 15-108 (309)
238 PF04415 DUF515: Protein of un 45.6 33 0.00072 31.8 4.3 15 69-83 353-367 (416)
239 COG5193 LHP1 La protein, small 43.7 10 0.00023 34.6 0.8 63 56-118 172-244 (438)
240 PRK11901 hypothetical protein; 43.6 2.5E+02 0.0054 25.3 10.6 58 59-121 246-305 (327)
241 PF03468 XS: XS domain; Inter 41.8 61 0.0013 24.4 4.6 45 149-195 29-74 (116)
242 KOG4213|consensus 39.3 42 0.00092 27.3 3.5 59 55-119 108-169 (205)
243 PF11411 DNA_ligase_IV: DNA li 39.0 24 0.00052 20.5 1.5 15 69-83 20-34 (36)
244 COG1759 5-formaminoimidazole-4 38.1 89 0.0019 28.1 5.6 25 136-160 250-274 (361)
245 PF11823 DUF3343: Protein of u 36.2 1.4E+02 0.0029 20.2 5.7 59 102-162 3-63 (73)
246 KOG4008|consensus 36.1 53 0.0012 28.0 3.8 36 133-168 36-71 (261)
247 PRK10905 cell division protein 35.7 3.1E+02 0.0067 24.7 8.6 60 57-121 246-307 (328)
248 PRK11901 hypothetical protein; 34.9 1.1E+02 0.0024 27.5 5.8 59 140-200 245-306 (327)
249 KOG4008|consensus 34.7 36 0.00079 28.9 2.6 32 56-87 38-69 (261)
250 TIGR02542 B_forsyth_147 Bacter 34.4 38 0.00083 25.4 2.4 101 66-188 11-129 (145)
251 KOG2891|consensus 33.8 41 0.00088 29.3 2.8 34 59-92 150-195 (445)
252 KOG4213|consensus 33.1 1.2E+02 0.0027 24.7 5.2 55 138-197 112-169 (205)
253 PF09707 Cas_Cas2CT1978: CRISP 32.9 99 0.0021 22.0 4.2 48 59-109 26-73 (86)
254 PF07530 PRE_C2HC: Associated 32.2 66 0.0014 21.6 3.1 59 73-131 2-63 (68)
255 smart00833 CobW_C Cobalamin sy 31.4 88 0.0019 21.8 4.0 24 66-89 8-32 (92)
256 PTZ00191 60S ribosomal protein 30.8 2E+02 0.0044 22.6 6.0 55 139-195 83-139 (145)
257 PF05036 SPOR: Sporulation rel 30.7 1.1E+02 0.0024 20.1 4.2 54 105-158 10-64 (76)
258 KOG1295|consensus 30.3 43 0.00092 30.6 2.5 69 137-205 7-79 (376)
259 COG3254 Uncharacterized conser 29.6 1.7E+02 0.0036 21.6 5.0 42 73-117 27-68 (105)
260 PRK11558 putative ssRNA endonu 29.2 1.1E+02 0.0023 22.3 4.0 49 59-110 28-76 (97)
261 PRK02302 hypothetical protein; 29.1 1.6E+02 0.0035 21.0 4.8 62 78-148 22-83 (89)
262 PRK11230 glycolate oxidase sub 27.8 1.6E+02 0.0036 28.3 6.2 50 151-200 203-256 (499)
263 KOG1295|consensus 27.7 66 0.0014 29.4 3.2 69 58-126 7-78 (376)
264 COG0150 PurM Phosphoribosylami 27.0 21 0.00044 32.2 -0.1 48 151-201 275-322 (345)
265 COG5222 Uncharacterized conser 26.9 62 0.0013 28.5 2.8 14 290-303 401-414 (427)
266 CHL00030 rpl23 ribosomal prote 26.2 1.9E+02 0.0041 20.9 4.8 34 61-94 21-56 (93)
267 PF08002 DUF1697: Protein of u 26.0 3.1E+02 0.0068 21.2 8.3 100 61-169 6-131 (137)
268 KOG1251|consensus 25.2 48 0.001 28.7 1.8 92 76-168 165-278 (323)
269 KOG2318|consensus 24.6 90 0.002 30.3 3.6 42 134-175 171-217 (650)
270 COG0030 KsgA Dimethyladenosine 24.5 1E+02 0.0022 26.9 3.7 33 60-92 97-129 (259)
271 PF12687 DUF3801: Protein of u 24.1 2E+02 0.0044 24.0 5.4 55 69-125 38-95 (204)
272 PF09383 NIL: NIL domain; Int 23.8 2.2E+02 0.0048 19.1 4.8 59 68-128 12-74 (76)
273 KOG4019|consensus 23.7 44 0.00094 27.3 1.2 64 59-128 11-79 (193)
274 PF03439 Spt5-NGN: Early trans 23.6 76 0.0016 22.2 2.3 24 99-122 43-66 (84)
275 PF14893 PNMA: PNMA 23.5 93 0.002 28.2 3.4 75 138-217 19-96 (331)
276 TIGR01873 cas_CT1978 CRISPR-as 23.1 83 0.0018 22.4 2.4 48 59-109 26-74 (87)
277 COG5353 Uncharacterized protei 22.8 3.9E+02 0.0085 21.2 6.3 54 59-112 88-154 (161)
278 COG5180 PBP1 Protein interacti 22.6 1.5E+02 0.0032 28.1 4.5 8 274-281 599-606 (654)
279 PF08156 NOP5NT: NOP5NT (NUC12 22.6 28 0.0006 23.4 -0.1 20 180-199 46-65 (67)
280 PF01071 GARS_A: Phosphoribosy 22.4 2.9E+02 0.0064 22.9 5.9 62 150-214 25-87 (194)
281 COG5638 Uncharacterized conser 22.3 1.3E+02 0.0029 27.8 4.1 42 134-175 143-189 (622)
282 PF05189 RTC_insert: RNA 3'-te 22.2 1.8E+02 0.004 21.0 4.3 49 60-108 12-65 (103)
283 PRK10905 cell division protein 21.9 2.4E+02 0.0052 25.4 5.5 54 144-199 251-307 (328)
284 PRK08559 nusG transcription an 21.7 1.6E+02 0.0036 23.2 4.2 54 85-161 36-89 (153)
285 COG2061 ACT-domain-containing 21.3 4.3E+02 0.0093 21.1 11.6 122 79-201 26-154 (170)
286 PF12091 DUF3567: Protein of u 20.8 1.1E+02 0.0023 21.7 2.5 54 102-163 10-76 (85)
287 PHA03326 nuclear egress membra 20.8 4.3E+02 0.0093 22.9 6.5 111 71-201 54-168 (275)
288 COG5193 LHP1 La protein, small 20.7 46 0.001 30.6 0.9 59 137-195 174-243 (438)
289 cd00187 TOP4c DNA Topoisomeras 20.7 4.6E+02 0.01 24.9 7.5 95 58-159 225-325 (445)
290 PF04026 SpoVG: SpoVG; InterP 20.6 1.8E+02 0.0039 20.5 3.7 26 84-109 2-27 (84)
291 PF00403 HMA: Heavy-metal-asso 20.4 2.4E+02 0.0052 17.8 6.4 54 139-197 1-58 (62)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=7.4e-39 Score=287.00 Aligned_cols=171 Identities=31% Similarity=0.510 Sum_probs=155.6
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 52 GPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 52 ~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
..+....++|||+|||+++||++|+++|+.||+|++|+|++|+.+++++|||||+|.++++|++||+.||+..|..+.++
T Consensus 101 ~~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~ 180 (346)
T TIGR01659 101 NDTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLK 180 (346)
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceee
Confidence 34566788999999999999999999999999999999999999999999999999999999999999999888777665
Q ss_pred cc-------cCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCC
Q psy4086 132 QQ-------EQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTL 203 (305)
Q Consensus 132 ~~-------~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 203 (305)
.. ....++|||+|||.++||++|+++|++||.|+.|+|++++ ++++++||||+|.+.++|++||+.||+..+
T Consensus 181 V~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~ 260 (346)
T TIGR01659 181 VSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIP 260 (346)
T ss_pred eecccccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCcc
Confidence 32 2345789999999999999999999999999999999998 899999999999999999999999999999
Q ss_pred CCCCccEEEEeccCCCcCC
Q psy4086 204 PGSKEPLLVKFADSGLKKR 222 (305)
Q Consensus 204 ~g~~~~l~v~~a~~~~~~~ 222 (305)
.+..++|+|++++.....+
T Consensus 261 ~g~~~~l~V~~a~~~~~~~ 279 (346)
T TIGR01659 261 EGGSQPLTVRLAEEHGKAK 279 (346)
T ss_pred CCCceeEEEEECCcccccc
Confidence 8877889999999765544
No 2
>KOG0148|consensus
Probab=100.00 E-value=3.2e-35 Score=242.82 Aligned_cols=154 Identities=22% Similarity=0.460 Sum_probs=143.0
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc------
Q psy4086 58 KTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR------ 131 (305)
Q Consensus 58 ~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~------ 131 (305)
...|||+.|..+++.++|++.|.+||+|.+++|++|..|+++|||+||.|.+.++|++||..|||+.|..|.++
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 45699999999999999999999999999999999999999999999999999999999999999999888777
Q ss_pred -----------------cccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHH
Q psy4086 132 -----------------QQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQM 194 (305)
Q Consensus 132 -----------------~~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~A 194 (305)
....+.++|||||++..+||++|++.|+.||.|.+|+|+.+ +|||||+|++.|+|.+|
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----qGYaFVrF~tkEaAahA 216 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----QGYAFVRFETKEAAAHA 216 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----cceEEEEecchhhHHHH
Confidence 23345688999999999999999999999999999999966 88999999999999999
Q ss_pred HHHhCCCCCCCCCccEEEEeccCC
Q psy4086 195 IQLFNGSTLPGSKEPLLVKFADSG 218 (305)
Q Consensus 195 i~~l~g~~~~g~~~~l~v~~a~~~ 218 (305)
|..+|+++|.| ..+++.|.+..
T Consensus 217 Iv~mNntei~G--~~VkCsWGKe~ 238 (321)
T KOG0148|consen 217 IVQMNNTEIGG--QLVRCSWGKEG 238 (321)
T ss_pred HHHhcCceeCc--eEEEEeccccC
Confidence 99999999999 77888886653
No 3
>KOG0144|consensus
Probab=100.00 E-value=2.5e-35 Score=257.32 Aligned_cols=167 Identities=26% Similarity=0.497 Sum_probs=153.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCc--------ccc
Q psy4086 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKG--------IHA 127 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~--------i~~ 127 (305)
.+..+||||-||..++|+||+++|++||.|.+|.|++|+.|+.++|||||.|.+.++|.+|+.+|+++. |.+
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 455679999999999999999999999999999999999999999999999999999999999998763 445
Q ss_pred eecccccC---CCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCC-CC
Q psy4086 128 QMARQQEQ---DPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGS-TL 203 (305)
Q Consensus 128 ~~~~~~~~---~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~-~~ 203 (305)
+++..+.. +.++||||-|+..+||.+++++|++||.|++|.|++|.++.+||||||.|++.|.|..||+.|||. .+
T Consensus 112 k~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tm 191 (510)
T KOG0144|consen 112 KYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTM 191 (510)
T ss_pred cccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceee
Confidence 55553333 378999999999999999999999999999999999999999999999999999999999999986 78
Q ss_pred CCCCccEEEEeccCCCcCC
Q psy4086 204 PGSKEPLLVKFADSGLKKR 222 (305)
Q Consensus 204 ~g~~~~l~v~~a~~~~~~~ 222 (305)
+|+..+|.|+||+.++.|.
T Consensus 192 eGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 192 EGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred ccCCCceEEEecccCCCch
Confidence 9999999999999988775
No 4
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=5.1e-33 Score=261.81 Aligned_cols=163 Identities=19% Similarity=0.324 Sum_probs=148.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceeccccc--
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQE-- 134 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~~~-- 134 (305)
..++|||+||++++++++|+++|++||+|.+|+|++|+.+++++|||||+|.+.++|++|++.|||+.|.++.++...
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 457899999999999999999999999999999999999999999999999999999999999999888877665211
Q ss_pred ----------------CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHH
Q psy4086 135 ----------------QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQL 197 (305)
Q Consensus 135 ----------------~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~ 197 (305)
...++|||+||+.++++++|+++|+.||.|++|+|.+++ +++++|||||+|.+.++|.+||+.
T Consensus 186 ~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~a 265 (612)
T TIGR01645 186 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 265 (612)
T ss_pred cccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHH
Confidence 123689999999999999999999999999999999998 788999999999999999999999
Q ss_pred hCCCCCCCCCccEEEEeccCCCcC
Q psy4086 198 FNGSTLPGSKEPLLVKFADSGLKK 221 (305)
Q Consensus 198 l~g~~~~g~~~~l~v~~a~~~~~~ 221 (305)
||+..|+| +.|+|.++..+...
T Consensus 266 mNg~elgG--r~LrV~kAi~pP~~ 287 (612)
T TIGR01645 266 MNLFDLGG--QYLRVGKCVTPPDA 287 (612)
T ss_pred hCCCeeCC--eEEEEEecCCCccc
Confidence 99999999 67999998875443
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=7.1e-33 Score=252.44 Aligned_cols=164 Identities=35% Similarity=0.580 Sum_probs=150.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecccc---
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQ--- 133 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~~--- 133 (305)
.+++|||+|||++++|++|+++|++||+|.+|+|++|+.+|+++|||||+|.+.++|++||+.|||+.|.++.++..
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 35789999999999999999999999999999999999999999999999999999999999999988887766532
Q ss_pred ----cCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCc
Q psy4086 134 ----EQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKE 208 (305)
Q Consensus 134 ----~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 208 (305)
....++|||+|||.++++++|+++|+.||.|..++++.+. ++.++|||||+|.+.++|++||+.|||..+.+..+
T Consensus 82 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~ 161 (352)
T TIGR01661 82 PSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTE 161 (352)
T ss_pred ccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCce
Confidence 2245789999999999999999999999999999999987 78899999999999999999999999999998777
Q ss_pred cEEEEeccCCCc
Q psy4086 209 PLLVKFADSGLK 220 (305)
Q Consensus 209 ~l~v~~a~~~~~ 220 (305)
+|.|++++....
T Consensus 162 ~i~v~~a~~~~~ 173 (352)
T TIGR01661 162 PITVKFANNPSS 173 (352)
T ss_pred eEEEEECCCCCc
Confidence 899999987653
No 6
>KOG0117|consensus
Probab=100.00 E-value=1.5e-32 Score=240.99 Aligned_cols=172 Identities=24% Similarity=0.416 Sum_probs=149.3
Q ss_pred cCCCCCCCCCCCCCCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhc
Q psy4086 42 QHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQ 121 (305)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~ 121 (305)
.-.+++..+........|.||||.||.++.|+||..||++.|+|.+++|++|+.+|.+||||||.|.+.++|++||+.||
T Consensus 67 k~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~ln 146 (506)
T KOG0117|consen 67 KYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELN 146 (506)
T ss_pred ccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhh
Confidence 33456666777777888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccc-eecc---------------------------------------------------------------------
Q psy4086 122 DKGIHA-QMAR--------------------------------------------------------------------- 131 (305)
Q Consensus 122 g~~i~~-~~~~--------------------------------------------------------------------- 131 (305)
+++|.. +.+.
T Consensus 147 n~Eir~GK~igvc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRr 226 (506)
T KOG0117|consen 147 NYEIRPGKLLGVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARR 226 (506)
T ss_pred CccccCCCEeEEEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHh
Confidence 886642 1111
Q ss_pred ---------------------cccCC------CCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEE
Q psy4086 132 ---------------------QQEQD------PTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFAR 184 (305)
Q Consensus 132 ---------------------~~~~~------~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~ 184 (305)
..+.+ -+.|||.||+.++||+.|+++|++||.|+.|+.++| ||||.
T Consensus 227 Kl~~g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-------YaFVH 299 (506)
T KOG0117|consen 227 KLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-------YAFVH 299 (506)
T ss_pred hccCCceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-------eeEEe
Confidence 01111 145999999999999999999999999999998866 99999
Q ss_pred ecCHHHHHHHHHHhCCCCCCCCCccEEEEeccCCCcCC
Q psy4086 185 LESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKR 222 (305)
Q Consensus 185 f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~~~~~~~ 222 (305)
|.+.++|.+|++.+||++|+| ..|.|.+|++...++
T Consensus 300 f~eR~davkAm~~~ngkeldG--~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 300 FAEREDAVKAMKETNGKELDG--SPIEVTLAKPVDKKK 335 (506)
T ss_pred ecchHHHHHHHHHhcCceecC--ceEEEEecCChhhhc
Confidence 999999999999999999999 669999999866554
No 7
>KOG0145|consensus
Probab=100.00 E-value=9.1e-33 Score=227.08 Aligned_cols=168 Identities=31% Similarity=0.525 Sum_probs=155.0
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc---
Q psy4086 55 QLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR--- 131 (305)
Q Consensus 55 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~--- 131 (305)
+..++.|.|.-||.++|+|||+.+|...|+|++|++++|+.+|.+.||+||.|.+++||++|+..|||-+++.+.++
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 45678899999999999999999999999999999999999999999999999999999999999998777665554
Q ss_pred --c--ccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCC
Q psy4086 132 --Q--QEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGS 206 (305)
Q Consensus 132 --~--~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 206 (305)
+ ......+|||.+||..+|..+|+++|++||.|...+|+.|. +|.+||.+||+|.-.++|++||..|||..-.|+
T Consensus 118 ARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~ 197 (360)
T KOG0145|consen 118 ARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGC 197 (360)
T ss_pred ccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCC
Confidence 2 33456789999999999999999999999999999999999 999999999999999999999999999999998
Q ss_pred CccEEEEeccCCCcCC
Q psy4086 207 KEPLLVKFADSGLKKR 222 (305)
Q Consensus 207 ~~~l~v~~a~~~~~~~ 222 (305)
..+|.|+||+.+..+.
T Consensus 198 tepItVKFannPsq~t 213 (360)
T KOG0145|consen 198 TEPITVKFANNPSQKT 213 (360)
T ss_pred CCCeEEEecCCccccc
Confidence 8999999999886664
No 8
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=2e-31 Score=256.83 Aligned_cols=163 Identities=25% Similarity=0.470 Sum_probs=147.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCccc----ceecc
Q psy4086 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIH----AQMAR 131 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~----~~~~~ 131 (305)
...++|||+||++++|+++|+++|+.||+|.+++++++. +++++|||||+|.+.++|.+|++.|||+.|. ++.+.
T Consensus 176 ~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~ 254 (562)
T TIGR01628 176 KKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLY 254 (562)
T ss_pred cCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeE
Confidence 445779999999999999999999999999999999986 6899999999999999999999999999887 44332
Q ss_pred c-------------------------ccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEec
Q psy4086 132 Q-------------------------QEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLE 186 (305)
Q Consensus 132 ~-------------------------~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~ 186 (305)
. ......+|||+||+.++++++|+++|++||.|++|+|+.+.+|.++|||||+|.
T Consensus 255 v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~ 334 (562)
T TIGR01628 255 VGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFS 334 (562)
T ss_pred eecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeC
Confidence 1 022346799999999999999999999999999999999988999999999999
Q ss_pred CHHHHHHHHHHhCCCCCCCCCccEEEEeccCCCcC
Q psy4086 187 SKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKK 221 (305)
Q Consensus 187 ~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~~~~~~ 221 (305)
+.++|.+|+..|||..|.| ++|.|.+|..+..+
T Consensus 335 ~~~~A~~A~~~~~g~~~~g--k~l~V~~a~~k~~~ 367 (562)
T TIGR01628 335 NPEEANRAVTEMHGRMLGG--KPLYVALAQRKEQR 367 (562)
T ss_pred CHHHHHHHHHHhcCCeeCC--ceeEEEeccCcHHH
Confidence 9999999999999999999 77999999986544
No 9
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.98 E-value=7.3e-31 Score=246.91 Aligned_cols=165 Identities=22% Similarity=0.362 Sum_probs=139.8
Q ss_pred CCCCCCCCCCCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcc
Q psy4086 46 SPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGI 125 (305)
Q Consensus 46 ~~~~~~~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i 125 (305)
++..+........|+|||+|||++++|++|+++|++||.|.+|+|++| .+|+++|||||+|.+.++|++||+.||+..|
T Consensus 46 Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i 124 (578)
T TIGR01648 46 PPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEI 124 (578)
T ss_pred CCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCee
Confidence 444444444556789999999999999999999999999999999999 6899999999999999999999999987655
Q ss_pred c-ceecc-------------------------------------------------------------------------
Q psy4086 126 H-AQMAR------------------------------------------------------------------------- 131 (305)
Q Consensus 126 ~-~~~~~------------------------------------------------------------------------- 131 (305)
. .+.+.
T Consensus 125 ~~Gr~l~V~~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~ 204 (578)
T TIGR01648 125 RPGRLLGVCISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMP 204 (578)
T ss_pred cCCccccccccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhc
Confidence 3 11100
Q ss_pred ----------------cc-------cCCCCceEEecCCCCCCHHHHHHHHhhC--CCeEEEEEeeCCCCCcccEEEEEec
Q psy4086 132 ----------------QQ-------EQDPTNLYIANLPLNFKECDLESLLAKY--VTVVSTRILRDNNNTSKGVGFARLE 186 (305)
Q Consensus 132 ----------------~~-------~~~~~~l~V~nlp~~~te~~l~~~F~~~--g~v~~v~i~~~~~g~~~g~afV~f~ 186 (305)
.. ....++|||+||++++++++|+++|++| |.|++|+++ ++||||+|+
T Consensus 205 gki~l~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-------rgfAFVeF~ 277 (578)
T TIGR01648 205 GRIQLWGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-------RDYAFVHFE 277 (578)
T ss_pred cceEecCceEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-------cCeEEEEeC
Confidence 00 0112569999999999999999999999 999999876 459999999
Q ss_pred CHHHHHHHHHHhCCCCCCCCCccEEEEeccCCCc
Q psy4086 187 SKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLK 220 (305)
Q Consensus 187 ~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~~~~~ 220 (305)
+.++|++|++.||+..|.+ +.|+|.|+++...
T Consensus 278 s~e~A~kAi~~lnG~~i~G--r~I~V~~Akp~~~ 309 (578)
T TIGR01648 278 DREDAVKAMDELNGKELEG--SEIEVTLAKPVDK 309 (578)
T ss_pred CHHHHHHHHHHhCCCEECC--EEEEEEEccCCCc
Confidence 9999999999999999999 7799999987544
No 10
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.98 E-value=3.8e-31 Score=241.05 Aligned_cols=162 Identities=28% Similarity=0.434 Sum_probs=144.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccce-------e
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQ-------M 129 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~-------~ 129 (305)
..++|||+|||+++++++|+++|+.||.|..++++.+..++.++|||||+|.+.++|+.|++.|||..+.+. +
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 456799999999999999999999999999999999988899999999999999999999999998866432 1
Q ss_pred cccc----------------------------------------------------------------------------
Q psy4086 130 ARQQ---------------------------------------------------------------------------- 133 (305)
Q Consensus 130 ~~~~---------------------------------------------------------------------------- 133 (305)
....
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 1000
Q ss_pred ------------------cCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHH
Q psy4086 134 ------------------EQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQM 194 (305)
Q Consensus 134 ------------------~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A 194 (305)
.....+|||+|||+++++++|+++|++||.|++|+|++|. ++.++|||||+|.+.++|.+|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~A 327 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMA 327 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHH
Confidence 0011259999999999999999999999999999999998 999999999999999999999
Q ss_pred HHHhCCCCCCCCCccEEEEeccCCCc
Q psy4086 195 IQLFNGSTLPGSKEPLLVKFADSGLK 220 (305)
Q Consensus 195 i~~l~g~~~~g~~~~l~v~~a~~~~~ 220 (305)
|+.|||..|.| +.|+|.|+..+..
T Consensus 328 i~~lnG~~~~g--r~i~V~~~~~~~~ 351 (352)
T TIGR01661 328 ILSLNGYTLGN--RVLQVSFKTNKAY 351 (352)
T ss_pred HHHhCCCEECC--eEEEEEEccCCCC
Confidence 99999999999 7799999987654
No 11
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=2.3e-30 Score=243.81 Aligned_cols=161 Identities=21% Similarity=0.445 Sum_probs=145.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceeccccc
Q psy4086 55 QLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQE 134 (305)
Q Consensus 55 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~~~ 134 (305)
+...++|||+|||.++++++|+++|++||+|.+|+|++|+.+++++|||||+|.+.++|++||. |+|..+.++.+....
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 4456789999999999999999999999999999999999999999999999999999999997 888877766544111
Q ss_pred -------------------CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHH
Q psy4086 135 -------------------QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQM 194 (305)
Q Consensus 135 -------------------~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A 194 (305)
...++|||+|||..+++++|+++|+.||.|..|.|+.+. +|.++|||||+|.+.++|.+|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A 244 (457)
T TIGR01622 165 SQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEA 244 (457)
T ss_pred cchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 124789999999999999999999999999999999998 679999999999999999999
Q ss_pred HHHhCCCCCCCCCccEEEEeccCC
Q psy4086 195 IQLFNGSTLPGSKEPLLVKFADSG 218 (305)
Q Consensus 195 i~~l~g~~~~g~~~~l~v~~a~~~ 218 (305)
++.|||..|.| ++|+|.|+...
T Consensus 245 ~~~l~g~~i~g--~~i~v~~a~~~ 266 (457)
T TIGR01622 245 LEVMNGFELAG--RPIKVGYAQDS 266 (457)
T ss_pred HHhcCCcEECC--EEEEEEEccCC
Confidence 99999999999 77999998753
No 12
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.97 E-value=4.1e-30 Score=247.73 Aligned_cols=156 Identities=25% Similarity=0.445 Sum_probs=141.7
Q ss_pred eEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecccc------
Q psy4086 60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQ------ 133 (305)
Q Consensus 60 ~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~~------ 133 (305)
+|||+|||+++||++|+++|++||.|.+|+|++|..+++++|||||+|.+.++|++|++.||+..|.++.++..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 59999999999999999999999999999999999999999999999999999999999998887776655521
Q ss_pred ---cCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccE
Q psy4086 134 ---EQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPL 210 (305)
Q Consensus 134 ---~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l 210 (305)
.....+|||+||+.++++++|+++|++||.|.+|+|..+.+|+++|||||+|.+.++|.+|++.|||..+.+ +.|
T Consensus 82 ~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~--~~i 159 (562)
T TIGR01628 82 SLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLND--KEV 159 (562)
T ss_pred cccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecC--ceE
Confidence 122457999999999999999999999999999999999988999999999999999999999999999999 568
Q ss_pred EEEeccC
Q psy4086 211 LVKFADS 217 (305)
Q Consensus 211 ~v~~a~~ 217 (305)
.|.....
T Consensus 160 ~v~~~~~ 166 (562)
T TIGR01628 160 YVGRFIK 166 (562)
T ss_pred EEecccc
Confidence 8865443
No 13
>KOG0131|consensus
Probab=99.96 E-value=2e-28 Score=191.72 Aligned_cols=163 Identities=27% Similarity=0.410 Sum_probs=144.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecccc---
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQ--- 133 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~~--- 133 (305)
...|||||||+..++++-|.++|-+.|+|..+++.+|+.+...+|||||+|.++++|+-|++-||..++.++.++..
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 34679999999999999999999999999999999999999999999999999999999999988666666655522
Q ss_pred -----cCCCCceEEecCCCCCCHHHHHHHHhhCCCeEE-EEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCC
Q psy4086 134 -----EQDPTNLYIANLPLNFKECDLESLLAKYVTVVS-TRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGS 206 (305)
Q Consensus 134 -----~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~-v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 206 (305)
.....+|||+||.++++|..|.+.|+.||.+.+ -+|+++. +|.+++|+||.|.+.+.+.+|+..+||..+..
T Consensus 88 ~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~n- 166 (203)
T KOG0131|consen 88 AHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCN- 166 (203)
T ss_pred cccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcC-
Confidence 223478999999999999999999999999766 4888888 78999999999999999999999999999998
Q ss_pred CccEEEEeccCCCcC
Q psy4086 207 KEPLLVKFADSGLKK 221 (305)
Q Consensus 207 ~~~l~v~~a~~~~~~ 221 (305)
++++|.++..+..+
T Consensus 167 -r~itv~ya~k~~~k 180 (203)
T KOG0131|consen 167 -RPITVSYAFKKDTK 180 (203)
T ss_pred -CceEEEEEEecCCC
Confidence 77999998775444
No 14
>KOG0145|consensus
Probab=99.95 E-value=3.9e-27 Score=193.94 Aligned_cols=164 Identities=28% Similarity=0.470 Sum_probs=145.5
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCc-------c
Q psy4086 53 PEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKG-------I 125 (305)
Q Consensus 53 ~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~-------i 125 (305)
.+..+...|||.+||+.+|..||+++|++||.|..-+|+.|..||.+||.+||.|...++|+.||+.|||.. |
T Consensus 122 s~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepI 201 (360)
T KOG0145|consen 122 SDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPI 201 (360)
T ss_pred hhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCe
Confidence 345567789999999999999999999999999999999999999999999999999999999999999873 2
Q ss_pred cceecc-----------------------------------------------------------------cccCCCCce
Q psy4086 126 HAQMAR-----------------------------------------------------------------QQEQDPTNL 140 (305)
Q Consensus 126 ~~~~~~-----------------------------------------------------------------~~~~~~~~l 140 (305)
.++++. .......+|
T Consensus 202 tVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ci 281 (360)
T KOG0145|consen 202 TVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCI 281 (360)
T ss_pred EEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEE
Confidence 333322 111123579
Q ss_pred EEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEeccCC
Q psy4086 141 YIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSG 218 (305)
Q Consensus 141 ~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~~~ 218 (305)
||=||..+.+|..|.++|..||.|..|+|++|- ++++|||+||.+.+.++|..||..|||+.+.+ +.|.|.|...+
T Consensus 282 FvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~--rvLQVsFKtnk 358 (360)
T KOG0145|consen 282 FVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGD--RVLQVSFKTNK 358 (360)
T ss_pred EEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccc--eEEEEEEecCC
Confidence 999999999999999999999999999999998 68999999999999999999999999999999 78999997654
No 15
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.95 E-value=1.6e-26 Score=218.10 Aligned_cols=156 Identities=22% Similarity=0.303 Sum_probs=132.8
Q ss_pred CCCCeEEEcCCCC-CCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecccc-
Q psy4086 56 LSKTNLYIRGLTQ-DTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQ- 133 (305)
Q Consensus 56 ~~~~~l~V~~Lp~-~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~~- 133 (305)
...++|||+||++ .+|+++|+++|+.||.|.+|+|++++ +|||||+|.+.++|++|++.|||..|.++.++..
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 3567899999998 69999999999999999999999874 5899999999999999999999887766554410
Q ss_pred ----------c---------------------------------CCCCceEEecCCCCCCHHHHHHHHhhCCC--eEEEE
Q psy4086 134 ----------E---------------------------------QDPTNLYIANLPLNFKECDLESLLAKYVT--VVSTR 168 (305)
Q Consensus 134 ----------~---------------------------------~~~~~l~V~nlp~~~te~~l~~~F~~~g~--v~~v~ 168 (305)
. ....+|||+|||.++++++|+++|+.||. |+.++
T Consensus 348 s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik 427 (481)
T TIGR01649 348 SKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFK 427 (481)
T ss_pred cccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEE
Confidence 0 11357999999999999999999999998 88888
Q ss_pred EeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCC----ccEEEEeccC
Q psy4086 169 ILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSK----EPLLVKFADS 217 (305)
Q Consensus 169 i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~----~~l~v~~a~~ 217 (305)
+..++++ .+++|||+|++.++|.+||..||++.|.++. ..|+|.|++.
T Consensus 428 ~~~~~~~-~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~ 479 (481)
T TIGR01649 428 FFPKDNE-RSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTS 479 (481)
T ss_pred EecCCCC-cceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccC
Confidence 8765543 5789999999999999999999999998842 1489999865
No 16
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.95 E-value=2.3e-26 Score=217.05 Aligned_cols=152 Identities=18% Similarity=0.222 Sum_probs=127.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHh--ccCccc-----ceec
Q psy4086 58 KTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKAL--QDKGIH-----AQMA 130 (305)
Q Consensus 58 ~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l--~g~~i~-----~~~~ 130 (305)
+++|||+|||++++|++|+++|++||.|.+|+|+++ ||||||+|.+.++|++|++.+ ++..|. +.+.
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 367999999999999999999999999999999864 469999999999999999864 444444 4433
Q ss_pred cccc----C----------CCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH
Q psy4086 131 RQQE----Q----------DPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQ 196 (305)
Q Consensus 131 ~~~~----~----------~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~ 196 (305)
.... . ...+|||+||++.+|+++|+++|+.||.|++|.|++++ .+++|||+|.+.++|.+|++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~---~~~~afVef~~~~~A~~A~~ 152 (481)
T TIGR01649 76 TSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN---NVFQALVEFESVNSAQHAKA 152 (481)
T ss_pred CCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC---CceEEEEEECCHHHHHHHHH
Confidence 2111 0 11268999999999999999999999999999998763 34689999999999999999
Q ss_pred HhCCCCCCCCCccEEEEeccCC
Q psy4086 197 LFNGSTLPGSKEPLLVKFADSG 218 (305)
Q Consensus 197 ~l~g~~~~g~~~~l~v~~a~~~ 218 (305)
.|||..|.+....|+|.|++..
T Consensus 153 ~Lng~~i~~~~~~l~v~~sk~~ 174 (481)
T TIGR01649 153 ALNGADIYNGCCTLKIEYAKPT 174 (481)
T ss_pred HhcCCcccCCceEEEEEEecCC
Confidence 9999999775467999998753
No 17
>KOG0109|consensus
Probab=99.95 E-value=1.8e-27 Score=198.77 Aligned_cols=145 Identities=22% Similarity=0.475 Sum_probs=131.0
Q ss_pred eEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCccc-----ceeccccc
Q psy4086 60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIH-----AQMARQQE 134 (305)
Q Consensus 60 ~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~-----~~~~~~~~ 134 (305)
+|||||||.++++.+|+.+|++||+|.+|.|+++ ||||..+++..|+.||+.|||..|+ ++.++.+.
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 5999999999999999999999999999999986 9999999999999999987766555 44555666
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKF 214 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~ 214 (305)
....+|+||||.+.++.++|+..|++||.|.+|+|.+| |+||.|.-.++|..||+.||+++|.| ++++|..
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-------y~fvh~d~~eda~~air~l~~~~~~g--k~m~vq~ 146 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-------YAFVHFDRAEDAVEAIRGLDNTEFQG--KRMHVQL 146 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc-------eeEEEEeeccchHHHHhccccccccc--ceeeeee
Confidence 67789999999999999999999999999999999955 99999999999999999999999999 7799999
Q ss_pred ccCCCcC
Q psy4086 215 ADSGLKK 221 (305)
Q Consensus 215 a~~~~~~ 221 (305)
...+-+.
T Consensus 147 stsrlrt 153 (346)
T KOG0109|consen 147 STSRLRT 153 (346)
T ss_pred ecccccc
Confidence 8775443
No 18
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.94 E-value=3.7e-26 Score=218.06 Aligned_cols=155 Identities=21% Similarity=0.351 Sum_probs=130.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcc------------CCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhcc
Q psy4086 55 QLSKTNLYIRGLTQDTTDKDLINMCSQY------------GPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQD 122 (305)
Q Consensus 55 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~------------G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g 122 (305)
....++|||||||+++|+++|+++|..| +.|..+.+ ++.+|||||+|.+.++|..||+ |||
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l~g 244 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-LDS 244 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-CCC
Confidence 3456789999999999999999999975 23333333 4467899999999999999995 888
Q ss_pred Ccccceecccc------------------------------------cCCCCceEEecCCCCCCHHHHHHHHhhCCCeEE
Q psy4086 123 KGIHAQMARQQ------------------------------------EQDPTNLYIANLPLNFKECDLESLLAKYVTVVS 166 (305)
Q Consensus 123 ~~i~~~~~~~~------------------------------------~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~ 166 (305)
..+.+..++.. ....++|||+|||..+++++|+++|+.||.|..
T Consensus 245 ~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~ 324 (509)
T TIGR01642 245 IIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKA 324 (509)
T ss_pred eEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE
Confidence 77665544311 112368999999999999999999999999999
Q ss_pred EEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEeccCC
Q psy4086 167 TRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSG 218 (305)
Q Consensus 167 v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~~~ 218 (305)
+.|+.+. +|.++|||||+|.+.++|..||+.|||..|.+ +.|.|.++...
T Consensus 325 ~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~--~~l~v~~a~~~ 375 (509)
T TIGR01642 325 FNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGD--NKLHVQRACVG 375 (509)
T ss_pred EEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC--eEEEEEECccC
Confidence 9999987 88999999999999999999999999999999 66999998754
No 19
>KOG0127|consensus
Probab=99.94 E-value=2.1e-26 Score=206.83 Aligned_cols=160 Identities=24% Similarity=0.439 Sum_probs=143.6
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc-------
Q psy4086 59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR------- 131 (305)
Q Consensus 59 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~------- 131 (305)
.||||++||+.++.++|.++|+.+|+|..|.++.++.++.+|||+||.|.-.+|++.|++.+++..+.++.++
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 6799999999999999999999999999999999999999999999999999999999999776665555444
Q ss_pred ------------------c------c--cCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEe
Q psy4086 132 ------------------Q------Q--EQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARL 185 (305)
Q Consensus 132 ------------------~------~--~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f 185 (305)
. . .....+|.|.|||+.+.+.+|+.+|+.||.|.+|.|++..+|+-+|||||+|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 0 0 0113579999999999999999999999999999999888888889999999
Q ss_pred cCHHHHHHHHHHhCCCCCCCCCccEEEEeccCCCc
Q psy4086 186 ESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLK 220 (305)
Q Consensus 186 ~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~~~~~ 220 (305)
....+|..|++.+|+..|+| |+|.|.||-.+..
T Consensus 166 k~~~dA~~Al~~~N~~~i~g--R~VAVDWAV~Kd~ 198 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDG--RPVAVDWAVDKDT 198 (678)
T ss_pred eeHHHHHHHHHhccCceecC--ceeEEeeeccccc
Confidence 99999999999999999999 8899999887543
No 20
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.94 E-value=7e-26 Score=216.16 Aligned_cols=159 Identities=19% Similarity=0.303 Sum_probs=136.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecccc---
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQ--- 133 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~~--- 133 (305)
..++|||+|||..+|+++|+++|+.||.|..+.|+++..+|.++|||||+|.+.++|..|++.|||..|.++.+...
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 45679999999999999999999999999999999999999999999999999999999999999888776544310
Q ss_pred --------------------------------cCCCCceEEecCCCC--C--------CHHHHHHHHhhCCCeEEEEEee
Q psy4086 134 --------------------------------EQDPTNLYIANLPLN--F--------KECDLESLLAKYVTVVSTRILR 171 (305)
Q Consensus 134 --------------------------------~~~~~~l~V~nlp~~--~--------te~~l~~~F~~~g~v~~v~i~~ 171 (305)
.....+|+|.||... + ..++|+++|++||.|+.|.|++
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~ 453 (509)
T TIGR01642 374 VGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPR 453 (509)
T ss_pred cCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeec
Confidence 112356888888532 1 1367999999999999999987
Q ss_pred CC----CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEeccC
Q psy4086 172 DN----NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADS 217 (305)
Q Consensus 172 ~~----~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~~ 217 (305)
+. ++..+|++||+|.+.++|++||..|||..|.| +.|.|.|...
T Consensus 454 ~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~g--r~v~~~~~~~ 501 (509)
T TIGR01642 454 PNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFND--RVVVAAFYGE 501 (509)
T ss_pred cCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECC--eEEEEEEeCH
Confidence 63 34567999999999999999999999999999 7799999764
No 21
>KOG0146|consensus
Probab=99.94 E-value=4.2e-26 Score=188.53 Aligned_cols=163 Identities=23% Similarity=0.412 Sum_probs=145.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcc--------cce
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGI--------HAQ 128 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i--------~~~ 128 (305)
+.++||||-|.+.-.|||++.+|..||.|++|.+.+.. .|.+||||||+|.+..+|..||..|+|... -++
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 45679999999999999999999999999999999988 699999999999999999999999998532 122
Q ss_pred ecc-----------------------------------------------------------------------------
Q psy4086 129 MAR----------------------------------------------------------------------------- 131 (305)
Q Consensus 129 ~~~----------------------------------------------------------------------------- 131 (305)
++.
T Consensus 97 ~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A 176 (371)
T KOG0146|consen 97 FADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAA 176 (371)
T ss_pred eccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccccc
Confidence 221
Q ss_pred --------------------------------------------------------------------------------
Q psy4086 132 -------------------------------------------------------------------------------- 131 (305)
Q Consensus 132 -------------------------------------------------------------------------------- 131 (305)
T Consensus 177 ~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aa 256 (371)
T KOG0146|consen 177 APVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAA 256 (371)
T ss_pred CCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhh
Confidence
Q ss_pred -----------------------cccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecC
Q psy4086 132 -----------------------QQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLES 187 (305)
Q Consensus 132 -----------------------~~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~ 187 (305)
....+.|+|||=+||.++.+.+|...|-.||.|.+.+++.|+ ++.+|.|+||.|.+
T Consensus 257 ypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDN 336 (371)
T KOG0146|consen 257 YPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDN 336 (371)
T ss_pred cchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCC
Confidence 344567999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCccEEEEeccCCCcCC
Q psy4086 188 KDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKR 222 (305)
Q Consensus 188 ~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~~~~~~~ 222 (305)
..+|+.||.+|||..|.- +.|+|.+.+++...|
T Consensus 337 p~SaQaAIqAMNGFQIGM--KRLKVQLKRPkdanR 369 (371)
T KOG0146|consen 337 PASAQAAIQAMNGFQIGM--KRLKVQLKRPKDANR 369 (371)
T ss_pred chhHHHHHHHhcchhhhh--hhhhhhhcCccccCC
Confidence 999999999999999999 669999988766544
No 22
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.92 E-value=2.9e-24 Score=202.40 Aligned_cols=155 Identities=21% Similarity=0.294 Sum_probs=132.7
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecccc----
Q psy4086 58 KTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQ---- 133 (305)
Q Consensus 58 ~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~~---- 133 (305)
.++|||+|||..+|+++|+++|+.||.|..|.|+++..+|+++|||||+|.+.++|.+|++.|||..|.++.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 5789999999999999999999999999999999999999999999999999999999999999876655433300
Q ss_pred --------------------------------------------------------------------------------
Q psy4086 134 -------------------------------------------------------------------------------- 133 (305)
Q Consensus 134 -------------------------------------------------------------------------------- 133 (305)
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence
Q ss_pred -------------cCCCCceEEecCCCCCC----------HHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHH
Q psy4086 134 -------------EQDPTNLYIANLPLNFK----------ECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDK 190 (305)
Q Consensus 134 -------------~~~~~~l~V~nlp~~~t----------e~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~ 190 (305)
.....+|+|.||....+ .+||++.|++||.|++|.|... ...|++||+|.+.++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~---~~~G~~fV~F~~~e~ 422 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTK---NSAGKIYLKFSSVDA 422 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCC---CCceeEEEEECCHHH
Confidence 01234577888854433 2689999999999999998754 467999999999999
Q ss_pred HHHHHHHhCCCCCCCCCccEEEEeccC
Q psy4086 191 CDQMIQLFNGSTLPGSKEPLLVKFADS 217 (305)
Q Consensus 191 A~~Ai~~l~g~~~~g~~~~l~v~~a~~ 217 (305)
|.+|++.|||..|+| +.|.|.|...
T Consensus 423 A~~A~~~lnGr~f~g--r~i~~~~~~~ 447 (457)
T TIGR01622 423 ALAAFQALNGRYFGG--KMITAAFVVN 447 (457)
T ss_pred HHHHHHHhcCcccCC--eEEEEEEEcH
Confidence 999999999999999 7799999764
No 23
>KOG0124|consensus
Probab=99.92 E-value=6.2e-25 Score=188.77 Aligned_cols=159 Identities=19% Similarity=0.346 Sum_probs=145.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceeccc-----
Q psy4086 58 KTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQ----- 132 (305)
Q Consensus 58 ~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~----- 132 (305)
-|+||||.|.+++.||.|+..|..||+|++|.+-+|+.|+++||||||+|+-+|.|..|++.|||.-+.++.++.
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 467999999999999999999999999999999999999999999999999999999999999998888887762
Q ss_pred -------------ccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHh
Q psy4086 133 -------------QEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLF 198 (305)
Q Consensus 133 -------------~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l 198 (305)
.....++|||..+..+++|+||+..|+.||+|.+|.+-++. .+..|||+||+|.+..+-.+||..|
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasM 272 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASM 272 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhc
Confidence 22234789999999999999999999999999999999999 5678999999999999999999999
Q ss_pred CCCCCCCCCccEEEEeccCC
Q psy4086 199 NGSTLPGSKEPLLVKFADSG 218 (305)
Q Consensus 199 ~g~~~~g~~~~l~v~~a~~~ 218 (305)
|-..+.| .-|+|-.+-..
T Consensus 273 NlFDLGG--QyLRVGk~vTP 290 (544)
T KOG0124|consen 273 NLFDLGG--QYLRVGKCVTP 290 (544)
T ss_pred chhhccc--ceEecccccCC
Confidence 9999999 66888776543
No 24
>KOG4205|consensus
Probab=99.92 E-value=3.8e-24 Score=186.79 Aligned_cols=163 Identities=25% Similarity=0.431 Sum_probs=145.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHH----hccCcccceeccc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA----LQDKGIHAQMARQ 132 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~----l~g~~i~~~~~~~ 132 (305)
+.++||||+|+++++++.|++.|.+||+|.+|.+++|+.+++++||+||+|.+.+...+++.. |+|+.|+.+.+..
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 568899999999999999999999999999999999999999999999999999999988865 7888888877664
Q ss_pred ccC--------CCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCC
Q psy4086 133 QEQ--------DPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTL 203 (305)
Q Consensus 133 ~~~--------~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 203 (305)
+.. ...+|||++|+.++++++|++.|++||.|..+.++.|. +.+.++|+||.|.+++++.+++. ..-+.|
T Consensus 85 r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~ 163 (311)
T KOG4205|consen 85 REDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDF 163 (311)
T ss_pred cccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeee
Confidence 332 23589999999999999999999999999999999998 78999999999999999999986 466888
Q ss_pred CCCCccEEEEeccCCCcCC
Q psy4086 204 PGSKEPLLVKFADSGLKKR 222 (305)
Q Consensus 204 ~g~~~~l~v~~a~~~~~~~ 222 (305)
.+ +.+.|+.|.++....
T Consensus 164 ~g--k~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 164 NG--KKVEVKRAIPKEVMQ 180 (311)
T ss_pred cC--ceeeEeeccchhhcc
Confidence 89 679999998876554
No 25
>KOG0127|consensus
Probab=99.92 E-value=3.9e-24 Score=192.33 Aligned_cols=158 Identities=25% Similarity=0.404 Sum_probs=137.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc------
Q psy4086 58 KTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR------ 131 (305)
Q Consensus 58 ~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~------ 131 (305)
.-+|.|+|||+.+.+.+|+.+|+.||.|.+|.|.+...++.+ |||||.|.+..+|+.|++.+|+..|.++.+.
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklc-GFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLC-GFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCcc-ceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 566999999999999999999999999999999987754444 9999999999999999999998877766543
Q ss_pred --------------------------------------------------------------------------------
Q psy4086 132 -------------------------------------------------------------------------------- 131 (305)
Q Consensus 132 -------------------------------------------------------------------------------- 131 (305)
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence
Q ss_pred -----------cccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHh-
Q psy4086 132 -----------QQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLF- 198 (305)
Q Consensus 132 -----------~~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l- 198 (305)
.......+|||.|||+++||++|.++|++||.|..+.|+.++ ++.++|.|||.|.+..+|.+||+.-
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~As 355 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAAS 355 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcC
Confidence 000012689999999999999999999999999999999999 8999999999999999999999876
Q ss_pred ----CC-CCCCCCCccEEEEeccCC
Q psy4086 199 ----NG-STLPGSKEPLLVKFADSG 218 (305)
Q Consensus 199 ----~g-~~~~g~~~~l~v~~a~~~ 218 (305)
.| ..|+| |.|.|..|-.+
T Consensus 356 pa~e~g~~ll~G--R~Lkv~~Av~R 378 (678)
T KOG0127|consen 356 PASEDGSVLLDG--RLLKVTLAVTR 378 (678)
T ss_pred ccCCCceEEEec--cEEeeeeccch
Confidence 23 56778 77999987654
No 26
>KOG0144|consensus
Probab=99.91 E-value=1.3e-24 Score=190.41 Aligned_cols=160 Identities=26% Similarity=0.429 Sum_probs=143.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccC--------cccce
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDK--------GIHAQ 128 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~--------~i~~~ 128 (305)
+.++||||-|++.+||.|++++|.+||.|++|.|++|. .+.+||||||+|.+.+.|..||+.|||. .+-++
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 35779999999999999999999999999999999998 5999999999999999999999999975 23333
Q ss_pred ecc-----------------------------------------------------------------------------
Q psy4086 129 MAR----------------------------------------------------------------------------- 131 (305)
Q Consensus 129 ~~~----------------------------------------------------------------------------- 131 (305)
++.
T Consensus 202 FADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~ 281 (510)
T KOG0144|consen 202 FADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAALA 281 (510)
T ss_pred ecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHhh
Confidence 333
Q ss_pred --------------------------------------------------------------------------------
Q psy4086 132 -------------------------------------------------------------------------------- 131 (305)
Q Consensus 132 -------------------------------------------------------------------------------- 131 (305)
T Consensus 282 ~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~a 361 (510)
T KOG0144|consen 282 AAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPVA 361 (510)
T ss_pred hhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCccc
Confidence
Q ss_pred ---------------------------------------------------------cccCCCCceEEecCCCCCCHHHH
Q psy4086 132 ---------------------------------------------------------QQEQDPTNLYIANLPLNFKECDL 154 (305)
Q Consensus 132 ---------------------------------------------------------~~~~~~~~l~V~nlp~~~te~~l 154 (305)
.+..+..+|||.+||.+.-+.+|
T Consensus 362 a~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~l 441 (510)
T KOG0144|consen 362 ASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQDL 441 (510)
T ss_pred ccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHHH
Confidence 33445678999999999999999
Q ss_pred HHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEeccCCC
Q psy4086 155 ESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGL 219 (305)
Q Consensus 155 ~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~~~~ 219 (305)
...|..||.|++.++..|+ ++.++.|+||.|++..+|.+||..|||..|.. +.|+|....++.
T Consensus 442 ~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~--KrlkVQlk~~~~ 505 (510)
T KOG0144|consen 442 IATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGS--KRLKVQLKRDRN 505 (510)
T ss_pred HHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhcc--ccceEEeeeccC
Confidence 9999999999999999999 99999999999999999999999999999999 559998876643
No 27
>KOG0123|consensus
Probab=99.91 E-value=1.1e-23 Score=190.05 Aligned_cols=153 Identities=25% Similarity=0.459 Sum_probs=138.1
Q ss_pred eEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceeccc--ccCCC
Q psy4086 60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQ--QEQDP 137 (305)
Q Consensus 60 ~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~--~~~~~ 137 (305)
.|||| +++||..|.++|+.+|+|..++|++|. | +.|||||.|.++++|++|++++|...+.++.++. ...++
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 49999 899999999999999999999999999 6 9999999999999999999999887777776662 33444
Q ss_pred CceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEeccC
Q psy4086 138 TNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADS 217 (305)
Q Consensus 138 ~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~~ 217 (305)
..|||.||+.+++..+|.++|+.||.|++|++..+.+| ++|| ||+|++.++|.+||+.|||..+.+ +.|.|.....
T Consensus 77 ~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~--kki~vg~~~~ 152 (369)
T KOG0123|consen 77 SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNG--KKIYVGLFER 152 (369)
T ss_pred ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCC--CeeEEeeccc
Confidence 55999999999999999999999999999999999988 8999 999999999999999999999999 5698888776
Q ss_pred CCcCC
Q psy4086 218 GLKKR 222 (305)
Q Consensus 218 ~~~~~ 222 (305)
+..+.
T Consensus 153 ~~er~ 157 (369)
T KOG0123|consen 153 KEERE 157 (369)
T ss_pred hhhhc
Confidence 55543
No 28
>KOG0148|consensus
Probab=99.90 E-value=1e-23 Score=174.79 Aligned_cols=142 Identities=21% Similarity=0.384 Sum_probs=116.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecccccC
Q psy4086 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQ 135 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~~~~ 135 (305)
...+|||||||+.++||+-|..||.+.|.|.+|+|+.|... |.. |.. .....++...
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~~--------v~w--------a~~-------p~nQsk~t~~ 60 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDELK--------VNW--------ATA-------PGNQSKPTSN 60 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehhhhc--------ccc--------ccC-------cccCCCCccc
Confidence 34578999999999999999999999999999999987310 000 000 0000111111
Q ss_pred CCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q psy4086 136 DPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKF 214 (305)
Q Consensus 136 ~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~ 214 (305)
.-..+||+.|...++-++|++.|.+||+|.+++|++|. ++++|||+||.|...++|++||..|||.+|.. |.|+..|
T Consensus 61 ~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~--R~IRTNW 138 (321)
T KOG0148|consen 61 QHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGR--RTIRTNW 138 (321)
T ss_pred cceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeecc--ceeeccc
Confidence 12358999999999999999999999999999999999 99999999999999999999999999999999 7799999
Q ss_pred ccCCCcCC
Q psy4086 215 ADSGLKKR 222 (305)
Q Consensus 215 a~~~~~~~ 222 (305)
|..+..+.
T Consensus 139 ATRKp~e~ 146 (321)
T KOG0148|consen 139 ATRKPSEM 146 (321)
T ss_pred cccCcccc
Confidence 99877544
No 29
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.87 E-value=3.2e-21 Score=182.24 Aligned_cols=75 Identities=17% Similarity=0.379 Sum_probs=69.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
..++|||+||++++++++|+++|+.||.|.+|+|.+|+.++++||||||+|.+.++|.+|++.||+..|.++.++
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~Lr 277 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLR 277 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 346799999999999999999999999999999999999999999999999999999999999998877766555
No 30
>KOG0110|consensus
Probab=99.87 E-value=1.1e-21 Score=181.81 Aligned_cols=161 Identities=24% Similarity=0.423 Sum_probs=139.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCC---CccceEEEEecchhhHHHHHHHhccCcccceeccc-
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTN---KCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQ- 132 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g---~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~- 132 (305)
..++|||.||++++|.++|..+|...|.|..+.|.+.+... .+.|||||+|.+.++|++|++.|+|..|++..+..
T Consensus 514 ~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk 593 (725)
T KOG0110|consen 514 TETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELK 593 (725)
T ss_pred cchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEE
Confidence 44459999999999999999999999999999888766321 25599999999999999999999988777665441
Q ss_pred ---------------ccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH
Q psy4086 133 ---------------QEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQ 196 (305)
Q Consensus 133 ---------------~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~ 196 (305)
.....++|+|.|||+..+-.+++++|..||.|.+|+|+... .+..+|||||+|-+..+|.+|+.
T Consensus 594 ~S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~ 673 (725)
T KOG0110|consen 594 ISENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFD 673 (725)
T ss_pred eccCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHH
Confidence 11123579999999999999999999999999999999884 56779999999999999999999
Q ss_pred HhCCCCCCCCCccEEEEeccCCC
Q psy4086 197 LFNGSTLPGSKEPLLVKFADSGL 219 (305)
Q Consensus 197 ~l~g~~~~g~~~~l~v~~a~~~~ 219 (305)
.|..+-+.| |.|.+.||....
T Consensus 674 al~STHlyG--RrLVLEwA~~d~ 694 (725)
T KOG0110|consen 674 ALGSTHLYG--RRLVLEWAKSDN 694 (725)
T ss_pred hhcccceec--hhhheehhccch
Confidence 999999999 669999998754
No 31
>KOG0147|consensus
Probab=99.87 E-value=2.5e-22 Score=181.47 Aligned_cols=166 Identities=20% Similarity=0.361 Sum_probs=145.6
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccce
Q psy4086 49 TPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQ 128 (305)
Q Consensus 49 ~~~~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~ 128 (305)
.....++.+.++||+--|.-.++..+|.++|+.+|+|.+|.|+.|+.+++++|.|||+|.|.+.+..||. |.|+.+.+.
T Consensus 170 ~~l~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~ 248 (549)
T KOG0147|consen 170 RILSPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGV 248 (549)
T ss_pred ccCCchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCc
Confidence 3344556677889999999999999999999999999999999999999999999999999999999996 888876655
Q ss_pred ecccc---------------------cCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEec
Q psy4086 129 MARQQ---------------------EQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLE 186 (305)
Q Consensus 129 ~~~~~---------------------~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~ 186 (305)
.+..+ ..+-..||||||.++++|++|+.+|+.||.|+.|.+..|. +|.++||+||+|.
T Consensus 249 pv~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~ 328 (549)
T KOG0147|consen 249 PVIVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFV 328 (549)
T ss_pred eeEecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEe
Confidence 44310 1112339999999999999999999999999999999998 9999999999999
Q ss_pred CHHHHHHHHHHhCCCCCCCCCccEEEEeccC
Q psy4086 187 SKDKCDQMIQLFNGSTLPGSKEPLLVKFADS 217 (305)
Q Consensus 187 ~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~~ 217 (305)
+.++|.+|++.|||.+|-| +.|+|.....
T Consensus 329 ~~~~ar~a~e~lngfelAG--r~ikV~~v~~ 357 (549)
T KOG0147|consen 329 NKEDARKALEQLNGFELAG--RLIKVSVVTE 357 (549)
T ss_pred cHHHHHHHHHHhccceecC--ceEEEEEeee
Confidence 9999999999999999999 7788877554
No 32
>KOG0123|consensus
Probab=99.86 E-value=3.1e-21 Score=174.28 Aligned_cols=155 Identities=27% Similarity=0.475 Sum_probs=138.0
Q ss_pred eEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc--------
Q psy4086 60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR-------- 131 (305)
Q Consensus 60 ~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~-------- 131 (305)
.|||.||++.+|.++|.++|+.||+|.+|++..+.. | ++|| ||+|.+++.|.+|++.+||..+.++.+-
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~ 154 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKE 154 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchh
Confidence 399999999999999999999999999999999984 5 9999 9999999999999999998766654433
Q ss_pred -------cccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCC
Q psy4086 132 -------QQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLP 204 (305)
Q Consensus 132 -------~~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 204 (305)
........+||.|++.+++++.|.++|..+|.|.++.++.+..+.+++|+||.|.+.++|..|++.|++..++
T Consensus 155 er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~ 234 (369)
T KOG0123|consen 155 EREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFG 234 (369)
T ss_pred hhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCC
Confidence 1112236789999999999999999999999999999999998889999999999999999999999999999
Q ss_pred CCCccEEEEeccCCC
Q psy4086 205 GSKEPLLVKFADSGL 219 (305)
Q Consensus 205 g~~~~l~v~~a~~~~ 219 (305)
+ ..+.|..+..+.
T Consensus 235 ~--~~~~V~~aqkk~ 247 (369)
T KOG0123|consen 235 D--KELYVGRAQKKS 247 (369)
T ss_pred c--cceeecccccch
Confidence 8 558888877743
No 33
>KOG0105|consensus
Probab=99.85 E-value=6.7e-20 Score=144.14 Aligned_cols=140 Identities=18% Similarity=0.260 Sum_probs=117.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc-----
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR----- 131 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~----- 131 (305)
..++|||||||.++.+.||.++|.+||.|.+|.|...+ ...+||||+|++..+|+.||..-||..+++..++
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 45789999999999999999999999999999975433 3567999999999999999998776665554443
Q ss_pred ----------------------------cccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEE
Q psy4086 132 ----------------------------QQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFA 183 (305)
Q Consensus 132 ----------------------------~~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV 183 (305)
+.......+.|.+||.+-+++||+++..+-|.|....+.+| +++.|
T Consensus 82 ggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g~GvV 155 (241)
T KOG0105|consen 82 GGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------GVGVV 155 (241)
T ss_pred CCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------cceee
Confidence 12222356899999999999999999999999999998876 37899
Q ss_pred EecCHHHHHHHHHHhCCCCCCC
Q psy4086 184 RLESKDKCDQMIQLFNGSTLPG 205 (305)
Q Consensus 184 ~f~~~~~A~~Ai~~l~g~~~~g 205 (305)
+|...|+.+-|+..|+...+.-
T Consensus 156 ~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 156 EYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred eeeehhhHHHHHHhhccccccC
Confidence 9999999999999999876643
No 34
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.83 E-value=9.7e-20 Score=143.95 Aligned_cols=87 Identities=22% Similarity=0.393 Sum_probs=79.6
Q ss_pred cCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEE
Q psy4086 134 EQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLV 212 (305)
Q Consensus 134 ~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v 212 (305)
....++|||+||+++++|++|+++|++||.|++|+|+.|+ ++++++||||+|++.++|++||+.||+..|++ +.|+|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~G--r~l~V 108 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNG--RHIRV 108 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC--EEEEE
Confidence 3446789999999999999999999999999999999998 88999999999999999999999999999999 77999
Q ss_pred EeccCCCcCC
Q psy4086 213 KFADSGLKKR 222 (305)
Q Consensus 213 ~~a~~~~~~~ 222 (305)
+++..+....
T Consensus 109 ~~a~~~~~~~ 118 (144)
T PLN03134 109 NPANDRPSAP 118 (144)
T ss_pred EeCCcCCCCC
Confidence 9998755443
No 35
>KOG0147|consensus
Probab=99.81 E-value=1.6e-19 Score=163.39 Aligned_cols=151 Identities=20% Similarity=0.322 Sum_probs=125.8
Q ss_pred EEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc---------
Q psy4086 61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR--------- 131 (305)
Q Consensus 61 l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~--------- 131 (305)
||||||.++++|++|+.+|+.||.|+.|.+.+|..||+++||+||+|.+.++|.+|++.|||..|.++.++
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~ 360 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVD 360 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999888777666
Q ss_pred ------------------------------------------------------------------ccc-----------
Q psy4086 132 ------------------------------------------------------------------QQE----------- 134 (305)
Q Consensus 132 ------------------------------------------------------------------~~~----------- 134 (305)
...
T Consensus 361 ~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~ 440 (549)
T KOG0147|consen 361 TKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFD 440 (549)
T ss_pred cccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccccC
Confidence 000
Q ss_pred CCCCceEEecC--CCCCCH--------HHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCC
Q psy4086 135 QDPTNLYIANL--PLNFKE--------CDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLP 204 (305)
Q Consensus 135 ~~~~~l~V~nl--p~~~te--------~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 204 (305)
..+.++.+.|+ |...|+ +|+.+.+.+||.|..|.|-.. +.|+.||.|.+.+.|..|+.+|||.+|.
T Consensus 441 i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n----s~g~VYvrc~s~~~A~~a~~alhgrWF~ 516 (549)
T KOG0147|consen 441 IPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN----SAGCVYVRCPSAEAAGTAVKALHGRWFA 516 (549)
T ss_pred CccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC----CCceEEEecCcHHHHHHHHHHHhhhhhc
Confidence 11223445555 222222 577888899999998877654 3489999999999999999999999999
Q ss_pred CCCccEEEEeccC
Q psy4086 205 GSKEPLLVKFADS 217 (305)
Q Consensus 205 g~~~~l~v~~a~~ 217 (305)
| +.|.++|-..
T Consensus 517 g--r~Ita~~~~~ 527 (549)
T KOG0147|consen 517 G--RMITAKYLPL 527 (549)
T ss_pred c--ceeEEEEeeh
Confidence 9 7799998543
No 36
>KOG4212|consensus
Probab=99.80 E-value=7.3e-18 Score=148.45 Aligned_cols=159 Identities=16% Similarity=0.257 Sum_probs=136.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHh-ccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc----
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCS-QYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR---- 131 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~-~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~---- 131 (305)
..+.+||.|||+++.+.+|++||. +.|+|+.|.++.|. +|++||||.|+|+++|.+++|++.||.+.+.++.+.
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 345599999999999999999996 78999999999998 699999999999999999999999886666655544
Q ss_pred --------------------------------------------------------------------------------
Q psy4086 132 -------------------------------------------------------------------------------- 131 (305)
Q Consensus 132 -------------------------------------------------------------------------------- 131 (305)
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~ 201 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSA 201 (608)
T ss_pred CchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchh
Confidence
Q ss_pred --------cccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCC
Q psy4086 132 --------QQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTL 203 (305)
Q Consensus 132 --------~~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 203 (305)
.......++||+||.+.+..+.|++.|.-.|.|+.+.+-.|+.|.++|||.++|.++-+|..||..|++.-+
T Consensus 202 ~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~ 281 (608)
T KOG4212|consen 202 SFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGL 281 (608)
T ss_pred hhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCC
Confidence 011112579999999999999999999999999999999999889999999999999999999999997555
Q ss_pred CCCCccEEEEeccCC
Q psy4086 204 PGSKEPLLVKFADSG 218 (305)
Q Consensus 204 ~g~~~~l~v~~a~~~ 218 (305)
.. ++..++...-.
T Consensus 282 ~~--~~~~~Rl~~~~ 294 (608)
T KOG4212|consen 282 FD--RRMTVRLDRIP 294 (608)
T ss_pred cc--ccceeeccccc
Confidence 55 66777775443
No 37
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.75 E-value=1.1e-17 Score=132.26 Aligned_cols=75 Identities=33% Similarity=0.652 Sum_probs=70.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceec
Q psy4086 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMA 130 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~ 130 (305)
...++|||+|||+++||++|+++|++||.|.+|+|+.|+.+++++|||||+|.+.++|++|++.||+..|.++.+
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l 106 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHI 106 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 345779999999999999999999999999999999999999999999999999999999999999998877654
No 38
>KOG4206|consensus
Probab=99.75 E-value=6.5e-17 Score=132.02 Aligned_cols=150 Identities=26% Similarity=0.405 Sum_probs=128.4
Q ss_pred CeEEEcCCCCCCcHHHHHH----HHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc---
Q psy4086 59 TNLYIRGLTQDTTDKDLIN----MCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR--- 131 (305)
Q Consensus 59 ~~l~V~~Lp~~~t~~~L~~----~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~--- 131 (305)
.||||.||+..+..++|+. +|++||+|.+|...+ +.+.||-|||.|.+.+.|..|++.|+|..+.++..+
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 3799999999999999988 999999999998876 567899999999999999999999998766655444
Q ss_pred --------cc----------------------------------------------cCCCCceEEecCCCCCCHHHHHHH
Q psy4086 132 --------QQ----------------------------------------------EQDPTNLYIANLPLNFKECDLESL 157 (305)
Q Consensus 132 --------~~----------------------------------------------~~~~~~l~V~nlp~~~te~~l~~~ 157 (305)
.+ ......||+.|||..++.+.|..+
T Consensus 87 A~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~l 166 (221)
T KOG4206|consen 87 AKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDL 166 (221)
T ss_pred ccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHH
Confidence 00 112245899999999999999999
Q ss_pred HhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEecc
Q psy4086 158 LAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFAD 216 (305)
Q Consensus 158 F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~ 216 (305)
|++|....+++++..+ ++.|||+|.+...|..|...|++..|-. +..++|.+++
T Consensus 167 f~qf~g~keir~i~~~----~~iAfve~~~d~~a~~a~~~lq~~~it~-~~~m~i~~a~ 220 (221)
T KOG4206|consen 167 FEQFPGFKEIRLIPPR----SGIAFVEFLSDRQASAAQQALQGFKITK-KNTMQITFAK 220 (221)
T ss_pred HhhCcccceeEeccCC----CceeEEecchhhhhHHHhhhhccceecc-CceEEecccC
Confidence 9999999999998753 6699999999999999999999998875 3678888875
No 39
>KOG1548|consensus
Probab=99.74 E-value=2.1e-16 Score=135.76 Aligned_cols=163 Identities=21% Similarity=0.288 Sum_probs=132.7
Q ss_pred CCCCCCCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeE--------EEEeeCCCCCCccceEEEEecchhhHHHHHHHhc
Q psy4086 50 PTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIIS--------TKAILDKTTNKCRGYGFVDFESGGYALAAVKALQ 121 (305)
Q Consensus 50 ~~~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~--------~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~ 121 (305)
+...+...++.|||.|||.++|.+++.++|++||.|.. |+|.++.. |..+|=|+|.|-..++++.|+..||
T Consensus 126 ~~~~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilD 204 (382)
T KOG1548|consen 126 WFNPEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILD 204 (382)
T ss_pred ccCcccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhC
Confidence 44455667788999999999999999999999998753 88888885 9999999999999999999999988
Q ss_pred cCcccceecc---------------------------------------------cccCCCCceEEecCCC----CCC--
Q psy4086 122 DKGIHAQMAR---------------------------------------------QQEQDPTNLYIANLPL----NFK-- 150 (305)
Q Consensus 122 g~~i~~~~~~---------------------------------------------~~~~~~~~l~V~nlp~----~~t-- 150 (305)
+..+.+..++ .+....++|.+.|+-- ..+
T Consensus 205 e~~~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~ 284 (382)
T KOG1548|consen 205 EDELRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPD 284 (382)
T ss_pred cccccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHH
Confidence 7666554444 1112246788888732 223
Q ss_pred -----HHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEeccCC
Q psy4086 151 -----ECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSG 218 (305)
Q Consensus 151 -----e~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~~~ 218 (305)
+++|++-+++||.|.+|.|.-. .+.|.+-|.|.+.++|..||+.|+|.+|+| |.|.....+..
T Consensus 285 l~~dlkedl~eec~K~G~v~~vvv~d~---hPdGvvtV~f~n~eeA~~ciq~m~GR~fdg--Rql~A~i~DG~ 352 (382)
T KOG1548|consen 285 LLNDLKEDLTEECEKFGQVRKVVVYDR---HPDGVVTVSFRNNEEADQCIQTMDGRWFDG--RQLTASIWDGK 352 (382)
T ss_pred HHHHHHHHHHHHHHHhCCcceEEEecc---CCCceeEEEeCChHHHHHHHHHhcCeeecc--eEEEEEEeCCc
Confidence 3577888999999999988755 578899999999999999999999999999 66888776653
No 40
>KOG4211|consensus
Probab=99.71 E-value=3.5e-16 Score=140.22 Aligned_cols=153 Identities=19% Similarity=0.266 Sum_probs=117.3
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHH----hccCcccceeccccc
Q psy4086 59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA----LQDKGIHAQMARQQE 134 (305)
Q Consensus 59 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~----l~g~~i~~~~~~~~~ 134 (305)
-.|-+.+|||++|++||.++|+.|+ |+.+.+.+ .+|+..|-|||+|.+++++++|+++ |-.+-|.+-.+...+
T Consensus 11 ~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~e 87 (510)
T KOG4211|consen 11 FEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGAE 87 (510)
T ss_pred eEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCcc
Confidence 4488999999999999999999995 77755544 4799999999999999999999985 334444433332111
Q ss_pred -------------CCCCceEEecCCCCCCHHHHHHHHhhCCCeEE-EEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCC
Q psy4086 135 -------------QDPTNLYIANLPLNFKECDLESLLAKYVTVVS-TRILRDNNNTSKGVGFARLESKDKCDQMIQLFNG 200 (305)
Q Consensus 135 -------------~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~-v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 200 (305)
.....|-+.+||+.+|++||.++|+..-.|.. +.++.+..+++.|-|||+|++.+.|+.|+.. |-
T Consensus 88 ~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hr 166 (510)
T KOG4211|consen 88 ADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HR 166 (510)
T ss_pred ccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HH
Confidence 12345888999999999999999998765555 4566666888999999999999999999975 33
Q ss_pred CCCCCCCccEEEEeccC
Q psy4086 201 STLPGSKEPLLVKFADS 217 (305)
Q Consensus 201 ~~~~g~~~~l~v~~a~~ 217 (305)
..|.- |-|.|-.+..
T Consensus 167 e~iGh--RYIEvF~Ss~ 181 (510)
T KOG4211|consen 167 ENIGH--RYIEVFRSSR 181 (510)
T ss_pred Hhhcc--ceEEeehhHH
Confidence 55555 5566655443
No 41
>KOG0110|consensus
Probab=99.71 E-value=1.3e-16 Score=148.39 Aligned_cols=155 Identities=23% Similarity=0.326 Sum_probs=127.2
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc--
Q psy4086 54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR-- 131 (305)
Q Consensus 54 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~-- 131 (305)
.+...+.|+|+|||..+..++|..+|..||+|..+.+. + .|. -++|+|.+..+|.+|.+.|....+....+.
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~-~G~---~aiv~fl~p~eAr~Afrklaysr~k~~plyle 454 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--P-GGT---GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLE 454 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecC--c-ccc---eeeeeecCccchHHHHHHhchhhhccCccccc
Confidence 44566789999999999999999999999999998544 2 121 489999999999999999875543321111
Q ss_pred -------------------------------------------------------cccCCCCceEEecCCCCCCHHHHHH
Q psy4086 132 -------------------------------------------------------QQEQDPTNLYIANLPLNFKECDLES 156 (305)
Q Consensus 132 -------------------------------------------------------~~~~~~~~l~V~nlp~~~te~~l~~ 156 (305)
......++|||.||++++|.++|..
T Consensus 455 ~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~ 534 (725)
T KOG0110|consen 455 WAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLED 534 (725)
T ss_pred cChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHH
Confidence 0011124499999999999999999
Q ss_pred HHhhCCCeEEEEEeeCCCCC----cccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEecc
Q psy4086 157 LLAKYVTVVSTRILRDNNNT----SKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFAD 216 (305)
Q Consensus 157 ~F~~~g~v~~v~i~~~~~g~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~ 216 (305)
+|...|.|.++.|...++.. +.|||||+|.+.++|++|++.|+|+.|+| +.|.|+++.
T Consensus 535 ~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldG--H~l~lk~S~ 596 (725)
T KOG0110|consen 535 LFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDG--HKLELKISE 596 (725)
T ss_pred HHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecC--ceEEEEecc
Confidence 99999999999988877443 45999999999999999999999999999 779999988
No 42
>KOG1457|consensus
Probab=99.70 E-value=1.8e-16 Score=128.52 Aligned_cols=145 Identities=23% Similarity=0.406 Sum_probs=114.8
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeC-CCCCCccceEEEEecchhhHHHHHHHhccCcccceec------
Q psy4086 58 KTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILD-KTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMA------ 130 (305)
Q Consensus 58 ~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~-~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~------ 130 (305)
-+||||.+||.++...||..+|..|-..+.+.|... +.....+-+|||.|.+..+|.+|+..|||.+++.+..
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 467999999999999999999999977776666543 3223466899999999999999999999987653221
Q ss_pred --c-----------------------------------------------------------------------------
Q psy4086 131 --R----------------------------------------------------------------------------- 131 (305)
Q Consensus 131 --~----------------------------------------------------------------------------- 131 (305)
+
T Consensus 114 lAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~a 193 (284)
T KOG1457|consen 114 LAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPSA 193 (284)
T ss_pred ehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCcc
Confidence 1
Q ss_pred ----cc-------cCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCC
Q psy4086 132 ----QQ-------EQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNG 200 (305)
Q Consensus 132 ----~~-------~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 200 (305)
.+ ...-.+|||.||..+++|++|+.+|+.|.....++|... .| -..||++|++.+.|..|+..|+|
T Consensus 194 ~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~-~g--~~vaf~~~~~~~~at~am~~lqg 270 (284)
T KOG1457|consen 194 NAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR-GG--MPVAFADFEEIEQATDAMNHLQG 270 (284)
T ss_pred cchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC-CC--cceEeecHHHHHHHHHHHHHhhc
Confidence 00 000147999999999999999999999988877776533 33 34799999999999999999998
Q ss_pred CCCCC
Q psy4086 201 STLPG 205 (305)
Q Consensus 201 ~~~~g 205 (305)
..|..
T Consensus 271 ~~~s~ 275 (284)
T KOG1457|consen 271 NLLSS 275 (284)
T ss_pred ceecc
Confidence 87754
No 43
>KOG0149|consensus
Probab=99.70 E-value=2.5e-17 Score=134.77 Aligned_cols=73 Identities=29% Similarity=0.530 Sum_probs=65.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHH----hccCcccc
Q psy4086 55 QLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA----LQDKGIHA 127 (305)
Q Consensus 55 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~----l~g~~i~~ 127 (305)
|..-|+||||+|+|++..|+|+++|++||+|+++.|+.|+.+|++|||+||+|+|.+.|.+|++. +||++-..
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNc 85 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANC 85 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCccccccccc
Confidence 44568899999999999999999999999999999999999999999999999999999999986 45554433
No 44
>KOG0124|consensus
Probab=99.68 E-value=7.6e-16 Score=133.08 Aligned_cols=156 Identities=16% Similarity=0.314 Sum_probs=128.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc-----
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR----- 131 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~----- 131 (305)
.-.+|||..+.++.+|+||+..|+.||+|..|.+-++...+.+|||+|++|.+...-..||..||=.++.++.++
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 445699999999999999999999999999999999998889999999999999999999999886666666555
Q ss_pred --------------------------------------------------------------------------------
Q psy4086 132 -------------------------------------------------------------------------------- 131 (305)
Q Consensus 132 -------------------------------------------------------------------------------- 131 (305)
T Consensus 289 TPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi~~v 368 (544)
T KOG0124|consen 289 TPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVITGV 368 (544)
T ss_pred CCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCccccchhccCCceeccC
Confidence
Q ss_pred ------------------------------------------------------------------------cccCCCCc
Q psy4086 132 ------------------------------------------------------------------------QQEQDPTN 139 (305)
Q Consensus 132 ------------------------------------------------------------------------~~~~~~~~ 139 (305)
-+..+++.
T Consensus 369 tP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~S~V 448 (544)
T KOG0124|consen 369 TPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRKQESTV 448 (544)
T ss_pred CCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhccccCcE
Confidence 11223355
Q ss_pred eEEecC--CCCCCH---HHHHHHHhhCCCeEEEEEeeCCCCCc-----ccEEEEEecCHHHHHHHHHHhCCCCCCCCCcc
Q psy4086 140 LYIANL--PLNFKE---CDLESLLAKYVTVVSTRILRDNNNTS-----KGVGFARLESKDKCDQMIQLFNGSTLPGSKEP 209 (305)
Q Consensus 140 l~V~nl--p~~~te---~~l~~~F~~~g~v~~v~i~~~~~g~~-----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~ 209 (305)
+.++|+ |.+++| .+|.+.+.+||.|.+|.|...+.+.. ----||+|+...++.+|+++|+|..|.|+ .
T Consensus 449 ivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr--~ 526 (544)
T KOG0124|consen 449 IVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGR--K 526 (544)
T ss_pred EEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceecCc--e
Confidence 677887 666654 58999999999999999888763321 12369999999999999999999999994 4
Q ss_pred EEEEe
Q psy4086 210 LLVKF 214 (305)
Q Consensus 210 l~v~~ 214 (305)
+..+.
T Consensus 527 VvAE~ 531 (544)
T KOG0124|consen 527 VVAEV 531 (544)
T ss_pred eehhh
Confidence 65544
No 45
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.67 E-value=2.8e-16 Score=108.73 Aligned_cols=70 Identities=37% Similarity=0.611 Sum_probs=66.0
Q ss_pred EEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 61 l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
|||+|||+++|+++|+++|++||.|..+.+..+ .++..+|||||+|.+.++|++|++.|||..+.++.++
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 5789999999999999999999999999999887653
No 46
>KOG0149|consensus
Probab=99.67 E-value=2.7e-16 Score=128.77 Aligned_cols=78 Identities=17% Similarity=0.316 Sum_probs=71.2
Q ss_pred CCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEec
Q psy4086 137 PTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFA 215 (305)
Q Consensus 137 ~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a 215 (305)
-++||||+|+|.+..++|++.|++||+|+++.|+.|+ +|++|||+||+|.|.++|++|++.-| -.|+| |...+++|
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdG--R~aNcnlA 88 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDG--RKANCNLA 88 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccc--cccccchh
Confidence 4689999999999999999999999999999999999 99999999999999999999998654 78999 55777777
Q ss_pred cC
Q psy4086 216 DS 217 (305)
Q Consensus 216 ~~ 217 (305)
.-
T Consensus 89 ~l 90 (247)
T KOG0149|consen 89 SL 90 (247)
T ss_pred hh
Confidence 65
No 47
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.66 E-value=4.6e-16 Score=139.99 Aligned_cols=84 Identities=27% Similarity=0.430 Sum_probs=77.7
Q ss_pred ccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEE
Q psy4086 133 QEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLL 211 (305)
Q Consensus 133 ~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~ 211 (305)
.....++|||+|||+++||++|+++|+.||.|++|+|+.|. +++++|||||+|.++++|++||+.||+..|.+ ++|+
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~g--r~i~ 180 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRN--KRLK 180 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCC--ceee
Confidence 34456899999999999999999999999999999999997 89999999999999999999999999999999 7799
Q ss_pred EEeccCC
Q psy4086 212 VKFADSG 218 (305)
Q Consensus 212 v~~a~~~ 218 (305)
|.+++..
T Consensus 181 V~~a~p~ 187 (346)
T TIGR01659 181 VSYARPG 187 (346)
T ss_pred eeccccc
Confidence 9998753
No 48
>KOG0106|consensus
Probab=99.65 E-value=1.4e-16 Score=131.31 Aligned_cols=137 Identities=22% Similarity=0.360 Sum_probs=116.9
Q ss_pred eEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc--------
Q psy4086 60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR-------- 131 (305)
Q Consensus 60 ~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~-------- 131 (305)
.||||+||+.+.+.+|.+||..||.|.++.+. .||+||+|.+..+|+.|+..||++.+.+..+.
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 59999999999999999999999999988875 24899999999999999999999988766411
Q ss_pred -------------------cccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHH
Q psy4086 132 -------------------QQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCD 192 (305)
Q Consensus 132 -------------------~~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~ 192 (305)
......+.|.|.++...+.+++|.+.|..+|.++...+ .++++||+|+..++|.
T Consensus 75 ~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-------~~~~~~v~Fs~~~da~ 147 (216)
T KOG0106|consen 75 RGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-------RRNFAFVEFSEQEDAK 147 (216)
T ss_pred cccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh-------hccccceeehhhhhhh
Confidence 00112356889999999999999999999999966554 3568999999999999
Q ss_pred HHHHHhCCCCCCCCCccEEEE
Q psy4086 193 QMIQLFNGSTLPGSKEPLLVK 213 (305)
Q Consensus 193 ~Ai~~l~g~~~~g~~~~l~v~ 213 (305)
+|++.|++..+.+ +.|.+.
T Consensus 148 ra~~~l~~~~~~~--~~l~~~ 166 (216)
T KOG0106|consen 148 RALEKLDGKKLNG--RRISVE 166 (216)
T ss_pred hcchhccchhhcC--ceeeec
Confidence 9999999999999 558773
No 49
>KOG0121|consensus
Probab=99.65 E-value=6.3e-16 Score=114.71 Aligned_cols=81 Identities=19% Similarity=0.333 Sum_probs=75.9
Q ss_pred CCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q psy4086 136 DPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKF 214 (305)
Q Consensus 136 ~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~ 214 (305)
.+++||||||...++|++|.++|+++|.|..|.+-.|+ +-.+.|||||+|.+.++|+.|++-++|+.++. ++|+|.|
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLdd--r~ir~D~ 112 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDD--RPIRIDW 112 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccc--cceeeec
Confidence 57899999999999999999999999999999999998 66789999999999999999999999999999 8899999
Q ss_pred ccCC
Q psy4086 215 ADSG 218 (305)
Q Consensus 215 a~~~ 218 (305)
...-
T Consensus 113 D~GF 116 (153)
T KOG0121|consen 113 DAGF 116 (153)
T ss_pred cccc
Confidence 6654
No 50
>KOG4212|consensus
Probab=99.64 E-value=4e-15 Score=131.36 Aligned_cols=73 Identities=29% Similarity=0.440 Sum_probs=65.7
Q ss_pred CCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEec
Q psy4086 137 PTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFA 215 (305)
Q Consensus 137 ~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a 215 (305)
.|+|||.|||.++||+.|++-|..||.|..+.|+. .|+++| .|+|.++++|++|+..|+|..++| +.|.|.|.
T Consensus 536 a~qIiirNlP~dfTWqmlrDKfre~G~v~yadime--~GkskG--VVrF~s~edAEra~a~Mngs~l~G--r~I~V~y~ 608 (608)
T KOG4212|consen 536 ACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME--NGKSKG--VVRFFSPEDAERACALMNGSRLDG--RNIKVTYF 608 (608)
T ss_pred ccEEEEecCCccccHHHHHHHHHhccceehhhhhc--cCCccc--eEEecCHHHHHHHHHHhccCcccC--ceeeeeeC
Confidence 47899999999999999999999999999999843 456665 899999999999999999999999 55999873
No 51
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.64 E-value=8.1e-16 Score=106.38 Aligned_cols=70 Identities=26% Similarity=0.603 Sum_probs=66.0
Q ss_pred eEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEE
Q psy4086 140 LYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLL 211 (305)
Q Consensus 140 l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~ 211 (305)
|||+|||.++++++|+++|++||.|..+.+..+.++..+++|||+|.+.++|++|++.|+|..+.+ +.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~--~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKING--RKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT--EEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECc--cCcC
Confidence 799999999999999999999999999999998778899999999999999999999999999999 5564
No 52
>KOG0122|consensus
Probab=99.63 E-value=3.3e-15 Score=122.89 Aligned_cols=76 Identities=26% Similarity=0.437 Sum_probs=69.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceec
Q psy4086 55 QLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMA 130 (305)
Q Consensus 55 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~ 130 (305)
..+.++|-|.||+.+++|++|++||..||.|..+.|.+|+.||.+||||||.|.+.++|.+||+.|||..+..-.+
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LIL 261 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLIL 261 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEE
Confidence 3366789999999999999999999999999999999999999999999999999999999999999987654433
No 53
>KOG1190|consensus
Probab=99.63 E-value=6.4e-15 Score=129.13 Aligned_cols=151 Identities=20% Similarity=0.287 Sum_probs=127.7
Q ss_pred CCeEEEcCCCCC-CcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc-----
Q psy4086 58 KTNLYIRGLTQD-TTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR----- 131 (305)
Q Consensus 58 ~~~l~V~~Lp~~-~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~----- 131 (305)
++.|.|.||..+ +|.+.|..+|..||+|.+|+|+.++.+ .|+|+|.|...|+.|++.|+|..+.++.++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd-----~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKD-----NALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCc-----ceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 677999999776 899999999999999999999998753 699999999999999999998888777666
Q ss_pred --------------------------c-----------ccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCC
Q psy4086 132 --------------------------Q-----------QEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNN 174 (305)
Q Consensus 132 --------------------------~-----------~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~ 174 (305)
. -.....+|...|+|.+++||+|+++|..-|...+......
T Consensus 372 H~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~-- 449 (492)
T KOG1190|consen 372 HTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQ-- 449 (492)
T ss_pred CccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecC--
Confidence 0 0012357889999999999999999999887766554443
Q ss_pred CCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEeccC
Q psy4086 175 NTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADS 217 (305)
Q Consensus 175 g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~~ 217 (305)
+.+.+|++.+++.|+|..|+..++.+.+.++ ..|+|+|.+.
T Consensus 450 -kd~kmal~q~~sveeA~~ali~~hnh~lgen-~hlRvSFSks 490 (492)
T KOG1190|consen 450 -KDRKMALPQLESVEEAIQALIDLHNHYLGEN-HHLRVSFSKS 490 (492)
T ss_pred -CCcceeecccCChhHhhhhccccccccCCCC-ceEEEEeecc
Confidence 4566999999999999999999999999775 5799999765
No 54
>KOG0122|consensus
Probab=99.62 E-value=1.8e-15 Score=124.34 Aligned_cols=82 Identities=27% Similarity=0.432 Sum_probs=77.9
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEE
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVK 213 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~ 213 (305)
.+.++|-|.||+.+++|++|+++|.+||.|..|.|.+|+ +|.+||||||.|.+.++|.+||..|||+-++. ..|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~--LILrvE 264 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDN--LILRVE 264 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccce--EEEEEE
Confidence 367889999999999999999999999999999999999 99999999999999999999999999999998 779999
Q ss_pred eccCC
Q psy4086 214 FADSG 218 (305)
Q Consensus 214 ~a~~~ 218 (305)
|+++.
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 98874
No 55
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.61 E-value=4e-15 Score=140.85 Aligned_cols=104 Identities=17% Similarity=0.261 Sum_probs=85.2
Q ss_pred chhhHHHHHHHhccCcccceecc------------cccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCC
Q psy4086 109 SGGYALAAVKALQDKGIHAQMAR------------QQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNT 176 (305)
Q Consensus 109 ~~~~A~~a~~~l~g~~i~~~~~~------------~~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~ 176 (305)
..++|.+||.+++|..+...... ......++|||+|||++++|++|+++|++||.|.+|+|++|.+|+
T Consensus 18 ~~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~ 97 (578)
T TIGR01648 18 PDEAALKALLERTGYTLVQENGQRKYGGPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQ 97 (578)
T ss_pred ccHHHHHHHHHhhCccccccCCcccCCCCCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCC
Confidence 36778888888877766544221 112235889999999999999999999999999999999999899
Q ss_pred cccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEE
Q psy4086 177 SKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVK 213 (305)
Q Consensus 177 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~ 213 (305)
++|||||+|.+.++|++||+.||+..|... +.|.|.
T Consensus 98 sRGfaFV~F~~~e~A~~Ai~~lng~~i~~G-r~l~V~ 133 (578)
T TIGR01648 98 NRGYAFVTFCGKEEAKEAVKLLNNYEIRPG-RLLGVC 133 (578)
T ss_pred ccceEEEEeCCHHHHHHHHHHcCCCeecCC-cccccc
Confidence 999999999999999999999999888532 334444
No 56
>KOG0107|consensus
Probab=99.61 E-value=5.7e-15 Score=115.63 Aligned_cols=80 Identities=20% Similarity=0.408 Sum_probs=72.5
Q ss_pred CCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEec
Q psy4086 136 DPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFA 215 (305)
Q Consensus 136 ~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a 215 (305)
..++||||||+..+++.||+.+|..||.|.+|.|... +.|||||+|++..+|+.|+..|+|+.|.| ..|+|++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn----PPGfAFVEFed~RDA~DAvr~LDG~~~cG--~r~rVE~S 82 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN----PPGFAFVEFEDPRDAEDAVRYLDGKDICG--SRIRVELS 82 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec----CCCceEEeccCcccHHHHHhhcCCccccC--ceEEEEee
Confidence 3688999999999999999999999999999998875 57899999999999999999999999999 55999998
Q ss_pred cCCCcC
Q psy4086 216 DSGLKK 221 (305)
Q Consensus 216 ~~~~~~ 221 (305)
......
T Consensus 83 ~G~~r~ 88 (195)
T KOG0107|consen 83 TGRPRG 88 (195)
T ss_pred cCCccc
Confidence 875543
No 57
>KOG0125|consensus
Probab=99.60 E-value=1.9e-15 Score=129.03 Aligned_cols=84 Identities=25% Similarity=0.523 Sum_probs=76.1
Q ss_pred cccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEE
Q psy4086 132 QQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLL 211 (305)
Q Consensus 132 ~~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~ 211 (305)
+....+++|+|.|||+.+.|.||+.+|++||.|.+|+|+.+..| +|||+||+|++.++|++|.++|||+.|+| |+|.
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~VEG--RkIE 167 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPADADRARAELHGTVVEG--RKIE 167 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhhHHHHHHHhhcceeec--eEEE
Confidence 33445688999999999999999999999999999999998754 79999999999999999999999999999 6699
Q ss_pred EEeccCC
Q psy4086 212 VKFADSG 218 (305)
Q Consensus 212 v~~a~~~ 218 (305)
|+.|..+
T Consensus 168 Vn~ATar 174 (376)
T KOG0125|consen 168 VNNATAR 174 (376)
T ss_pred Eeccchh
Confidence 9998763
No 58
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.59 E-value=6e-15 Score=102.23 Aligned_cols=69 Identities=35% Similarity=0.591 Sum_probs=63.5
Q ss_pred EEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceec
Q psy4086 61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMA 130 (305)
Q Consensus 61 l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~ 130 (305)
|||+|||+++++++|+++|+.||.|..+.+..++. +..+|+|||+|.+.++|.+|++.+++..+.++.+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l 69 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKL 69 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEc
Confidence 79999999999999999999999999999999987 8999999999999999999999999888888765
No 59
>KOG0125|consensus
Probab=99.59 E-value=9.7e-15 Score=124.74 Aligned_cols=71 Identities=21% Similarity=0.387 Sum_probs=66.3
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 59 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
.+|+|.|||+...|-||+.+|++||+|.+|.||.+. .-+|||+||+|++.+||++|-++|||..|.+|.+.
T Consensus 97 kRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIE 167 (376)
T KOG0125|consen 97 KRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIE 167 (376)
T ss_pred ceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEE
Confidence 349999999999999999999999999999999986 45999999999999999999999999988888776
No 60
>KOG0121|consensus
Probab=99.58 E-value=3.3e-15 Score=110.95 Aligned_cols=76 Identities=21% Similarity=0.301 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
..++|||||||++.++|++|.+||+++|+|+.|.+=.|+.+..+-|||||+|.+.++|+.|++.++|..++.+.++
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir 109 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIR 109 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCccccccee
Confidence 4678899999999999999999999999999999999999999999999999999999999999999999888765
No 61
>KOG0120|consensus
Probab=99.58 E-value=8.3e-15 Score=134.51 Aligned_cols=158 Identities=16% Similarity=0.349 Sum_probs=125.5
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceeccccc---
Q psy4086 58 KTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQE--- 134 (305)
Q Consensus 58 ~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~~~--- 134 (305)
...|||++||..+++++++++++.||.+....++.|..+|.++||||.+|.+......|++.|||..+..+.+....
T Consensus 289 ~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~ 368 (500)
T KOG0120|consen 289 PNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIV 368 (500)
T ss_pred cchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhc
Confidence 34599999999999999999999999999999999999999999999999999999999999999877655444100
Q ss_pred ---------C-------------------CCCceEEecC--CCCC-CH-------HHHHHHHhhCCCeEEEEEeeC-CC-
Q psy4086 135 ---------Q-------------------DPTNLYIANL--PLNF-KE-------CDLESLLAKYVTVVSTRILRD-NN- 174 (305)
Q Consensus 135 ---------~-------------------~~~~l~V~nl--p~~~-te-------~~l~~~F~~~g~v~~v~i~~~-~~- 174 (305)
. ....|.+-|+ +.++ .+ ++++.-+.+||.|..|.|.++ .+
T Consensus 369 g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~ 448 (500)
T KOG0120|consen 369 GASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDE 448 (500)
T ss_pred cchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCC
Confidence 0 0011111111 1111 11 456777889999999999998 32
Q ss_pred --CCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEeccC
Q psy4086 175 --NTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADS 217 (305)
Q Consensus 175 --g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~~ 217 (305)
....|..||+|.+.+++++|.++|+|..|.+ +.+...|.+.
T Consensus 449 ~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~n--RtVvtsYyde 491 (500)
T KOG0120|consen 449 NPVPGTGKVFVEFADTEDSQRAMEELTGRKFAN--RTVVASYYDE 491 (500)
T ss_pred CcCCCcccEEEEecChHHHHHHHHHccCceeCC--cEEEEEecCH
Confidence 3456789999999999999999999999999 7799988664
No 62
>KOG4207|consensus
Probab=99.57 E-value=7.9e-15 Score=117.69 Aligned_cols=83 Identities=29% Similarity=0.439 Sum_probs=77.0
Q ss_pred CCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q psy4086 136 DPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKF 214 (305)
Q Consensus 136 ~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~ 214 (305)
...+|-|-||.+-++.++|+.+|++||.|-+|.|.+|+ +..++|||||.|.+..+|+.|+++|+|..|+| +.|+|++
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldg--RelrVq~ 89 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDG--RELRVQM 89 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeecc--ceeeehh
Confidence 34679999999999999999999999999999999999 89999999999999999999999999999999 6699999
Q ss_pred ccCCCc
Q psy4086 215 ADSGLK 220 (305)
Q Consensus 215 a~~~~~ 220 (305)
|.-...
T Consensus 90 arygr~ 95 (256)
T KOG4207|consen 90 ARYGRP 95 (256)
T ss_pred hhcCCC
Confidence 875433
No 63
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.57 E-value=1.6e-14 Score=122.21 Aligned_cols=77 Identities=10% Similarity=0.247 Sum_probs=70.9
Q ss_pred CCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEecc
Q psy4086 137 PTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFAD 216 (305)
Q Consensus 137 ~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~ 216 (305)
.++|||+||++.++|++|+++|+.||.|++|+|+.++ ..++||||+|++.++|+.||. |||..|.+ +.|+|.+++
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~--~~~GfAFVtF~d~eaAe~All-LnG~~l~g--r~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN--ERSQIAYVTFKDPQGAETALL-LSGATIVD--QSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC--CCCCEEEEEeCcHHHHHHHHH-hcCCeeCC--ceEEEEecc
Confidence 4789999999999999999999999999999999886 357899999999999999995 99999999 779999987
Q ss_pred CC
Q psy4086 217 SG 218 (305)
Q Consensus 217 ~~ 218 (305)
.-
T Consensus 79 ~~ 80 (260)
T PLN03120 79 DY 80 (260)
T ss_pred CC
Confidence 54
No 64
>KOG0113|consensus
Probab=99.56 E-value=1.4e-14 Score=122.38 Aligned_cols=82 Identities=26% Similarity=0.385 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecccccC
Q psy4086 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQ 135 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~~~~ 135 (305)
..-+||||+.|+++++|.+|+..|+.||+|+.|.|++|+.||+++|||||+|+++.+...|.+..+|..|+++.+.....
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999887764443
Q ss_pred CC
Q psy4086 136 DP 137 (305)
Q Consensus 136 ~~ 137 (305)
..
T Consensus 179 Rg 180 (335)
T KOG0113|consen 179 RG 180 (335)
T ss_pred cc
Confidence 33
No 65
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.56 E-value=3.9e-14 Score=123.72 Aligned_cols=138 Identities=28% Similarity=0.478 Sum_probs=109.3
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceeccccc---
Q psy4086 58 KTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQE--- 134 (305)
Q Consensus 58 ~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~~~--- 134 (305)
.++|||+|||.++|+++|+++|.+||.|..+.+..++.+++++|||||+|.+.++|..|++.+++..+.++.+....
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 58899999999999999999999999999999999998999999999999999999999999887766655444221
Q ss_pred ----------------------------CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCC-CcccEEEEEe
Q psy4086 135 ----------------------------QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNN-TSKGVGFARL 185 (305)
Q Consensus 135 ----------------------------~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g-~~~g~afV~f 185 (305)
.....+++.+++..++..++...|..+|.+....+.....+ ......++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGN 274 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccch
Confidence 11256889999999999999999999999977777666532 2333334444
Q ss_pred cCHHHHHHHH
Q psy4086 186 ESKDKCDQMI 195 (305)
Q Consensus 186 ~~~~~A~~Ai 195 (305)
.....+..+.
T Consensus 275 ~~~~~~~~~~ 284 (306)
T COG0724 275 EASKDALESN 284 (306)
T ss_pred hHHHhhhhhh
Confidence 4444444333
No 66
>KOG0105|consensus
Probab=99.54 E-value=4e-14 Score=111.73 Aligned_cols=81 Identities=22% Similarity=0.388 Sum_probs=71.9
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKF 214 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~ 214 (305)
...++|||+|||.++.|.+|+++|.+||.|.+|.+.... ....||||+|++..+|+.||..-+|+.+++ ..|+|+|
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~--g~ppfafVeFEd~RDAeDAiygRdGYdydg--~rLRVEf 79 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP--GPPPFAFVEFEDPRDAEDAIYGRDGYDYDG--CRLRVEF 79 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC--CCCCeeEEEecCccchhhhhhcccccccCc--ceEEEEe
Confidence 356889999999999999999999999999999887554 335699999999999999999999999999 5599999
Q ss_pred ccCCC
Q psy4086 215 ADSGL 219 (305)
Q Consensus 215 a~~~~ 219 (305)
+....
T Consensus 80 prggr 84 (241)
T KOG0105|consen 80 PRGGR 84 (241)
T ss_pred ccCCC
Confidence 88754
No 67
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.54 E-value=2.4e-14 Score=99.17 Aligned_cols=70 Identities=27% Similarity=0.612 Sum_probs=63.6
Q ss_pred eEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEE
Q psy4086 140 LYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLL 211 (305)
Q Consensus 140 l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~ 211 (305)
|||+|||+++++++|+++|+.||.|..+++..++++..+++|||+|.+.++|.+|++.+++..+.| +.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g--~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDG--RKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT--EEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECC--EEcC
Confidence 799999999999999999999999999999999878899999999999999999999999999998 5453
No 68
>KOG0126|consensus
Probab=99.54 E-value=5.7e-16 Score=121.82 Aligned_cols=77 Identities=31% Similarity=0.512 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceeccc
Q psy4086 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQ 132 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~ 132 (305)
.++..|||||||++.||.||..+|++||+|++|.+++|+.||+++||||+.|++..+...|+..|||..|.++.++.
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirV 109 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRV 109 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEe
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999987763
No 69
>KOG0107|consensus
Probab=99.54 E-value=1.5e-14 Score=113.29 Aligned_cols=70 Identities=31% Similarity=0.473 Sum_probs=63.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
..|+||||||+..+++.||..+|..||+|..|.|-.+ +.|||||+|++..||+.|+..|||+.|.+..++
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~r 78 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIR 78 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEE
Confidence 3588999999999999999999999999999999764 478999999999999999999999998876554
No 70
>KOG0117|consensus
Probab=99.53 E-value=7.5e-14 Score=123.80 Aligned_cols=109 Identities=17% Similarity=0.244 Sum_probs=89.2
Q ss_pred cchhhHHHHHHHhccCcccceecc------------cccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-C
Q psy4086 108 ESGGYALAAVKALQDKGIHAQMAR------------QQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-N 174 (305)
Q Consensus 108 ~~~~~A~~a~~~l~g~~i~~~~~~------------~~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~ 174 (305)
.+.++|.++|.+-.|..|.+..-. ......+.||||.||.++.|++|.-+|++.|+|-+++|+.|+ +
T Consensus 42 ~~~eaal~al~E~tgy~l~ve~gqrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~s 121 (506)
T KOG0117|consen 42 QSEEAALKALLERTGYTLVVENGQRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFS 121 (506)
T ss_pred ccHHHHHHHHHHhcCceEEEeccccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccC
Confidence 346777777776666666544332 223345889999999999999999999999999999999997 9
Q ss_pred CCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEeccC
Q psy4086 175 NTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADS 217 (305)
Q Consensus 175 g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~~ 217 (305)
|.+||||||+|.+.++|++||+.||+++|... +.|.|.....
T Consensus 122 G~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~G-K~igvc~Sva 163 (506)
T KOG0117|consen 122 GDNRGYAFVTFCTKEEAQEAIKELNNYEIRPG-KLLGVCVSVA 163 (506)
T ss_pred CCCcceEEEEeecHHHHHHHHHHhhCccccCC-CEeEEEEeee
Confidence 99999999999999999999999999999533 6677776544
No 71
>KOG0129|consensus
Probab=99.51 E-value=6.9e-13 Score=120.03 Aligned_cols=144 Identities=17% Similarity=0.243 Sum_probs=113.7
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCC-CCC--Cccc---eEEEEecchhhHHHHHHHhc-----
Q psy4086 53 PEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDK-TTN--KCRG---YGFVDFESGGYALAAVKALQ----- 121 (305)
Q Consensus 53 ~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~-~~g--~~~G---~afV~f~~~~~A~~a~~~l~----- 121 (305)
......++||||+||++++|++|...|..||.+. |...... ..+ .++| |+|+.|+++..+...+.+..
T Consensus 254 ~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~ 332 (520)
T KOG0129|consen 254 RSPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGN 332 (520)
T ss_pred CccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccc
Confidence 3455678899999999999999999999999864 4433211 111 3667 99999999999988877632
Q ss_pred -----------cCcccceecc-----------cccCCCCceEEecCCCCCCHHHHHHHHh-hCCCeEEEEEeeCC-CCCc
Q psy4086 122 -----------DKGIHAQMAR-----------QQEQDPTNLYIANLPLNFKECDLESLLA-KYVTVVSTRILRDN-NNTS 177 (305)
Q Consensus 122 -----------g~~i~~~~~~-----------~~~~~~~~l~V~nlp~~~te~~l~~~F~-~~g~v~~v~i~~~~-~g~~ 177 (305)
.+.++++.+. ......+|||||+||.-++.++|..+|+ .||.|..+-|-.|. -..+
T Consensus 333 ~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYP 412 (520)
T KOG0129|consen 333 YYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYP 412 (520)
T ss_pred eEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCC
Confidence 1223444333 2223458999999999999999999998 79999999999995 6789
Q ss_pred ccEEEEEecCHHHHHHHHHH
Q psy4086 178 KGVGFARLESKDKCDQMIQL 197 (305)
Q Consensus 178 ~g~afV~f~~~~~A~~Ai~~ 197 (305)
+|-|.|+|.+..+-.+||++
T Consensus 413 kGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 413 KGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CCcceeeecccHHHHHHHhh
Confidence 99999999999999999974
No 72
>KOG0113|consensus
Probab=99.51 E-value=1e-13 Score=117.20 Aligned_cols=82 Identities=23% Similarity=0.381 Sum_probs=76.3
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEE
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVK 213 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~ 213 (305)
.+-+||||+-|+++++|..|+..|+.||.|+.|.|++|+ +|+++|||||+|++..+...|.+..+|..|++ +.|.|.
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idg--rri~VD 176 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDG--RRILVD 176 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecC--cEEEEE
Confidence 455899999999999999999999999999999999998 99999999999999999999999999999999 668888
Q ss_pred eccCC
Q psy4086 214 FADSG 218 (305)
Q Consensus 214 ~a~~~ 218 (305)
+....
T Consensus 177 vERgR 181 (335)
T KOG0113|consen 177 VERGR 181 (335)
T ss_pred ecccc
Confidence 86554
No 73
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.51 E-value=5.6e-14 Score=118.99 Aligned_cols=70 Identities=17% Similarity=0.180 Sum_probs=63.9
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 58 KTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 58 ~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
.++|||+||++.+|+++|+++|+.||+|++|.|+.++. .+|||||+|.++++|+.|+. |||..|.++.++
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~ 73 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVT 73 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEE
Confidence 46799999999999999999999999999999998864 57899999999999999995 999888887766
No 74
>KOG1365|consensus
Probab=99.49 E-value=8e-13 Score=115.21 Aligned_cols=157 Identities=15% Similarity=0.201 Sum_probs=119.5
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHh---cc-CCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhc---cCc-ccc--
Q psy4086 58 KTNLYIRGLTQDTTDKDLINMCS---QY-GPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQ---DKG-IHA-- 127 (305)
Q Consensus 58 ~~~l~V~~Lp~~~t~~~L~~~f~---~~-G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~---g~~-i~~-- 127 (305)
.-.|-+++||+++++.|+.++|. .. |..+.|-.++.. +|+..|-|||.|..+++|+.|+.+-. |++ |..
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFR 239 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFR 239 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45588999999999999999995 22 245666666655 68999999999999999999997521 211 100
Q ss_pred -----------e--------------------ecccccCCCCceEEecCCCCCCHHHHHHHHhhCCC-eEE--EEEeeCC
Q psy4086 128 -----------Q--------------------MARQQEQDPTNLYIANLPLNFKECDLESLLAKYVT-VVS--TRILRDN 173 (305)
Q Consensus 128 -----------~--------------------~~~~~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~-v~~--v~i~~~~ 173 (305)
+ ...+......+|-+++||+..+.++|.++|..|.. |.. |.+..+.
T Consensus 240 STaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~ 319 (508)
T KOG1365|consen 240 STAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG 319 (508)
T ss_pred HhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC
Confidence 0 00022233567999999999999999999988865 333 7888888
Q ss_pred CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEeccC
Q psy4086 174 NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADS 217 (305)
Q Consensus 174 ~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~~ 217 (305)
.|++.|-|||+|.+.++|..|....+.+.... |-|.|--+..
T Consensus 320 qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~--RYiEvfp~S~ 361 (508)
T KOG1365|consen 320 QGRPSGEAFIQMRNAERARAAAQKCHKKLMKS--RYIEVFPCSV 361 (508)
T ss_pred CCCcChhhhhhhhhhHHHHHHHHHHHHhhccc--ceEEEeeccH
Confidence 89999999999999999999999888777756 6677765544
No 75
>KOG0126|consensus
Probab=99.47 E-value=5.1e-15 Score=116.48 Aligned_cols=101 Identities=23% Similarity=0.458 Sum_probs=86.3
Q ss_pred HHHHHhccCcccceec-----ccccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCH
Q psy4086 115 AAVKALQDKGIHAQMA-----RQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESK 188 (305)
Q Consensus 115 ~a~~~l~g~~i~~~~~-----~~~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~ 188 (305)
+-|..||.+.++...+ +..-.++.-|||||||+.+||.||..+|++||+|+.|.+++|+ +|+++||||+.|++.
T Consensus 8 k~i~~lne~Elq~g~~~~~SWH~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQ 87 (219)
T KOG0126|consen 8 KNIQKLNERELQLGIADKKSWHQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQ 87 (219)
T ss_pred HHHHHhhHHhhccccccccchhhhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCc
Confidence 3455577666654433 2334456779999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCCccEEEEeccC
Q psy4086 189 DKCDQMIQLFNGSTLPGSKEPLLVKFADS 217 (305)
Q Consensus 189 ~~A~~Ai~~l~g~~~~g~~~~l~v~~a~~ 217 (305)
.+..-|+..|||..|.| |.|+|.....
T Consensus 88 RSTILAVDN~NGiki~g--RtirVDHv~~ 114 (219)
T KOG0126|consen 88 RSTILAVDNLNGIKILG--RTIRVDHVSN 114 (219)
T ss_pred cceEEEEeccCCceecc--eeEEeeeccc
Confidence 99999999999999999 7799987554
No 76
>KOG4207|consensus
Probab=99.47 E-value=9.5e-14 Score=111.53 Aligned_cols=78 Identities=26% Similarity=0.349 Sum_probs=71.9
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 54 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
+...-++|-|-||-+.++.++|+.+|++||.|-+|.|.+|+.|+.++|||||.|.+..+|+.|+++|||..|+++.++
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 333456799999999999999999999999999999999999999999999999999999999999999998887654
No 77
>KOG0114|consensus
Probab=99.46 E-value=3.9e-13 Score=96.26 Aligned_cols=74 Identities=24% Similarity=0.289 Sum_probs=66.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 55 QLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 55 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
...++.|||.|||+++|.+++.++|.+||.|+.|+|=..+. .+|.|||.|++..+|.+|++.|+|..+..+.+.
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~ 88 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLV 88 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEE
Confidence 34567799999999999999999999999999999876554 589999999999999999999999998887764
No 78
>smart00362 RRM_2 RNA recognition motif.
Probab=99.46 E-value=4.5e-13 Score=92.23 Aligned_cols=71 Identities=37% Similarity=0.680 Sum_probs=65.7
Q ss_pred ceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEE
Q psy4086 139 NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLV 212 (305)
Q Consensus 139 ~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v 212 (305)
+|||+|||..+++++|+++|.+||.|..+.+..+. +.++++|||+|.+.++|++|++.+++..+.+ +.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~--~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGG--RPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECC--EEEee
Confidence 58999999999999999999999999999999876 6788999999999999999999999999988 55766
No 79
>KOG4454|consensus
Probab=99.45 E-value=2e-14 Score=116.34 Aligned_cols=140 Identities=16% Similarity=0.228 Sum_probs=125.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecccccCCC
Q psy4086 58 KTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDP 137 (305)
Q Consensus 58 ~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~~~~~~ 137 (305)
.+||||+|+...++|+-|.++|-+-|+|.+|.|..++ .++.| ||||.|+++-.+..|++.+||.++..+.+.
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q------ 80 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQ------ 80 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhh------
Confidence 3679999999999999999999999999999998887 56777 999999999999999999999988877653
Q ss_pred CceEEec----CCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCC
Q psy4086 138 TNLYIAN----LPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPG 205 (305)
Q Consensus 138 ~~l~V~n----lp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 205 (305)
.+++.|+ |...++++.+.+.|+.-+.+..+++.++.+|+.+.+.|+++.-..+.-.++....+....-
T Consensus 81 ~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~ 152 (267)
T KOG4454|consen 81 RTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLELFQ 152 (267)
T ss_pred cccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCcCC
Confidence 5677787 8888999999999999999999999999999999999999998888888888777666655
No 80
>KOG1190|consensus
Probab=99.45 E-value=4.1e-13 Score=117.93 Aligned_cols=152 Identities=16% Similarity=0.235 Sum_probs=116.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHH-------hccCccccee
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA-------LQDKGIHAQM 129 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~-------l~g~~i~~~~ 129 (305)
.++.|.++|||++++|+||.+++..||.|..+.+.+.++ .||++|.|++.|...+.. |.|+.|.+++
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~ 100 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQY 100 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCcceeehh
Confidence 345699999999999999999999999999999987664 799999999998873321 2233332221
Q ss_pred cc---------------------------------c------ccCCC---CceEEecCCCCCCHHHHHHHHhhCCCeEEE
Q psy4086 130 AR---------------------------------Q------QEQDP---TNLYIANLPLNFKECDLESLLAKYVTVVST 167 (305)
Q Consensus 130 ~~---------------------------------~------~~~~~---~~l~V~nlp~~~te~~l~~~F~~~g~v~~v 167 (305)
.. . ....+ -.++|+|+-+.++-+.|..+|++||.|.++
T Consensus 101 sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKI 180 (492)
T KOG1190|consen 101 SNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKI 180 (492)
T ss_pred hhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEE
Confidence 11 0 00001 136789999999999999999999999988
Q ss_pred EEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEeccC
Q psy4086 168 RILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADS 217 (305)
Q Consensus 168 ~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~~ 217 (305)
.-+.+..+ -.|+|+|.+.+.|+.|..+|+|..|......|+|.|.+-
T Consensus 181 iTF~Knn~---FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Skl 227 (492)
T KOG1190|consen 181 ITFTKNNG---FQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKL 227 (492)
T ss_pred EEEecccc---hhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhc
Confidence 66654322 248999999999999999999998866556788888654
No 81
>KOG0146|consensus
Probab=99.45 E-value=1.7e-13 Score=114.06 Aligned_cols=99 Identities=27% Similarity=0.494 Sum_probs=86.8
Q ss_pred Ccccceeccc--ccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCC
Q psy4086 123 KGIHAQMARQ--QEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNG 200 (305)
Q Consensus 123 ~~i~~~~~~~--~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 200 (305)
+.|.++.+.. +..+.++||||-|.+.-.|||++.+|..||.|++|.+.+..+|.+||||||.|.+..+|+.||..|+|
T Consensus 3 rpiqvkpadsesrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHg 82 (371)
T KOG0146|consen 3 RPIQVKPADSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHG 82 (371)
T ss_pred CCccccccccccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcc
Confidence 4455555543 33367899999999999999999999999999999999999999999999999999999999999998
Q ss_pred C-CCCCCCccEEEEeccCCCcC
Q psy4086 201 S-TLPGSKEPLLVKFADSGLKK 221 (305)
Q Consensus 201 ~-~~~g~~~~l~v~~a~~~~~~ 221 (305)
. .+.|....|.|+|++..+.|
T Consensus 83 SqTmpGASSSLVVK~ADTdkER 104 (371)
T KOG0146|consen 83 SQTMPGASSSLVVKFADTDKER 104 (371)
T ss_pred cccCCCCccceEEEeccchHHH
Confidence 6 57887778999999987665
No 82
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.44 E-value=6.5e-13 Score=110.77 Aligned_cols=78 Identities=12% Similarity=0.171 Sum_probs=70.2
Q ss_pred CCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEec
Q psy4086 136 DPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFA 215 (305)
Q Consensus 136 ~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a 215 (305)
...+|||+||++.+||++|+++|+.||.|.+|+|+++. ..++||||+|++.++|+.|+ .|+|..|.+ ++|.|..+
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~--et~gfAfVtF~d~~aaetAl-lLnGa~l~d--~~I~It~~ 78 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG--EYACTAYVTFKDAYALETAV-LLSGATIVD--QRVCITRW 78 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC--CcceEEEEEECCHHHHHHHH-hcCCCeeCC--ceEEEEeC
Confidence 35789999999999999999999999999999999884 55689999999999999999 599999999 67998887
Q ss_pred cCC
Q psy4086 216 DSG 218 (305)
Q Consensus 216 ~~~ 218 (305)
...
T Consensus 79 ~~y 81 (243)
T PLN03121 79 GQY 81 (243)
T ss_pred ccc
Confidence 653
No 83
>smart00362 RRM_2 RNA recognition motif.
Probab=99.44 E-value=6.6e-13 Score=91.39 Aligned_cols=69 Identities=35% Similarity=0.569 Sum_probs=63.3
Q ss_pred eEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceec
Q psy4086 60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMA 130 (305)
Q Consensus 60 ~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~ 130 (305)
+|||+|||.++++++|+++|++||+|.++.+..++ +.++|+|||+|.+.++|++|++.+++..+.++.+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i 69 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPL 69 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEE
Confidence 49999999999999999999999999999999877 7789999999999999999999999888776544
No 84
>KOG0111|consensus
Probab=99.44 E-value=7.4e-14 Score=113.10 Aligned_cols=85 Identities=22% Similarity=0.337 Sum_probs=80.3
Q ss_pred CCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q psy4086 136 DPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKF 214 (305)
Q Consensus 136 ~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~ 214 (305)
..++||||+|..+++|..|...|-.||.|..|.++.|- +++.|||+||+|...|+|.+||..||+.++.| |.|+|.+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~G--rtirVN~ 86 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFG--RTIRVNL 86 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcc--eeEEEee
Confidence 45789999999999999999999999999999999998 88999999999999999999999999999999 8899999
Q ss_pred ccCCCcCC
Q psy4086 215 ADSGLKKR 222 (305)
Q Consensus 215 a~~~~~~~ 222 (305)
|.+.+-+.
T Consensus 87 AkP~kike 94 (298)
T KOG0111|consen 87 AKPEKIKE 94 (298)
T ss_pred cCCccccC
Confidence 99876654
No 85
>PLN03213 repressor of silencing 3; Provisional
Probab=99.44 E-value=4e-13 Score=120.55 Aligned_cols=79 Identities=15% Similarity=0.251 Sum_probs=71.4
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCH--HHHHHHHHHhCCCCCCCCCccEEE
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESK--DKCDQMIQLFNGSTLPGSKEPLLV 212 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~--~~A~~Ai~~l~g~~~~g~~~~l~v 212 (305)
....+||||||.+.+++++|+.+|..||.|.+|.|++. +| ||||||+|.+. +++.+||..|||..+.| +.|+|
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE-TG--RGFAFVEMssdddaEeeKAISaLNGAEWKG--R~LKV 82 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT-KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKG--GRLRL 82 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc-cC--CceEEEEecCCcHHHHHHHHHHhcCCeecC--ceeEE
Confidence 34578999999999999999999999999999999954 45 99999999987 78999999999999999 66999
Q ss_pred EeccCC
Q psy4086 213 KFADSG 218 (305)
Q Consensus 213 ~~a~~~ 218 (305)
..|++.
T Consensus 83 NKAKP~ 88 (759)
T PLN03213 83 EKAKEH 88 (759)
T ss_pred eeccHH
Confidence 998873
No 86
>PLN03213 repressor of silencing 3; Provisional
Probab=99.43 E-value=4.4e-13 Score=120.33 Aligned_cols=73 Identities=16% Similarity=0.281 Sum_probs=65.0
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecch--hhHHHHHHHhccCcccceecc
Q psy4086 55 QLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESG--GYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 55 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~--~~A~~a~~~l~g~~i~~~~~~ 131 (305)
.....+||||||++++++++|+.+|..||.|.+|.|+ +.+| ||||||+|.+. .++.+||..|||..+.++.++
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LK 81 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLR 81 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeE
Confidence 3445779999999999999999999999999999999 4467 99999999987 789999999999888877766
No 87
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.43 E-value=5.2e-13 Score=111.39 Aligned_cols=70 Identities=21% Similarity=0.216 Sum_probs=62.9
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 58 KTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 58 ~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
..+|||+||++.+|+++|+++|+.||+|++|+|++|. +.+++|||+|.++++|+.|+. |+|..|..+.+.
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~ 74 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVC 74 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEE
Confidence 3679999999999999999999999999999999985 456899999999999999995 999988777654
No 88
>KOG0108|consensus
Probab=99.42 E-value=3.8e-13 Score=122.95 Aligned_cols=83 Identities=24% Similarity=0.476 Sum_probs=78.8
Q ss_pred CceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEecc
Q psy4086 138 TNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFAD 216 (305)
Q Consensus 138 ~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~ 216 (305)
+.+||||+|++++|++|.++|+..|.|.+++++.|+ +|+++|||||+|.+.++|++|++.|||.++.| ++|+|.|+.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~g--r~l~v~~~~ 96 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNG--RKLRVNYAS 96 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCC--ceEEeeccc
Confidence 789999999999999999999999999999999999 99999999999999999999999999999999 779999998
Q ss_pred CCCcCC
Q psy4086 217 SGLKKR 222 (305)
Q Consensus 217 ~~~~~~ 222 (305)
..+.+.
T Consensus 97 ~~~~~~ 102 (435)
T KOG0108|consen 97 NRKNAE 102 (435)
T ss_pred ccchhH
Confidence 766543
No 89
>KOG0108|consensus
Probab=99.41 E-value=1.4e-13 Score=125.74 Aligned_cols=73 Identities=22% Similarity=0.534 Sum_probs=70.2
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 59 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
+.|||||||++++|++|.++|+..|.|..++++.|+.||+++||||++|.+.++|+.|++.|||.++.++.++
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~ 91 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLR 91 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEE
Confidence 6699999999999999999999999999999999999999999999999999999999999999988887766
No 90
>smart00360 RRM RNA recognition motif.
Probab=99.40 E-value=1.2e-12 Score=89.76 Aligned_cols=68 Identities=34% Similarity=0.548 Sum_probs=62.8
Q ss_pred EcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceec
Q psy4086 63 IRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMA 130 (305)
Q Consensus 63 V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~ 130 (305)
|+|||.++++++|+++|+.||.|.++.+..++.++.++|+|||+|.+.++|.+|++.+++..+.++.+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~ 68 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPL 68 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEE
Confidence 67999999999999999999999999999998889999999999999999999999999887766543
No 91
>KOG0132|consensus
Probab=99.40 E-value=3.9e-11 Score=113.19 Aligned_cols=69 Identities=23% Similarity=0.412 Sum_probs=60.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceec
Q psy4086 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMA 130 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~ 130 (305)
+.+||||||+|+.+++|.||.++|+.||+|.+|.++. ++|||||++...++|++|+.+|+...+..+.+
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~I 487 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTI 487 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceee
Confidence 3688999999999999999999999999999999875 46799999999999999999988665554443
No 92
>smart00360 RRM RNA recognition motif.
Probab=99.39 E-value=1.9e-12 Score=88.73 Aligned_cols=69 Identities=35% Similarity=0.668 Sum_probs=63.8
Q ss_pred EecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEE
Q psy4086 142 IANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLV 212 (305)
Q Consensus 142 V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v 212 (305)
|+|||..+++++|+++|+.||.|..+.+..++ ++.++++|||+|.+.++|.+|++.|++..+.+ +.|+|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~--~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDG--RPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCC--cEEEe
Confidence 57999999999999999999999999999987 68889999999999999999999999999988 55766
No 93
>KOG0130|consensus
Probab=99.39 E-value=1.8e-12 Score=97.33 Aligned_cols=83 Identities=17% Similarity=0.250 Sum_probs=76.1
Q ss_pred CCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q psy4086 136 DPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKF 214 (305)
Q Consensus 136 ~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~ 214 (305)
..--|||.++....+|++|.+.|..||+|+.+.+-.|+ +|..+|||+|+|++.++|++|+..|||..|-+ ..|.|.|
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~--q~v~VDw 148 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLG--QNVSVDW 148 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhC--CceeEEE
Confidence 34569999999999999999999999999999999998 99999999999999999999999999999999 5599998
Q ss_pred ccCCCc
Q psy4086 215 ADSGLK 220 (305)
Q Consensus 215 a~~~~~ 220 (305)
+-.+..
T Consensus 149 ~Fv~gp 154 (170)
T KOG0130|consen 149 CFVKGP 154 (170)
T ss_pred EEecCC
Confidence 876544
No 94
>KOG0131|consensus
Probab=99.38 E-value=7.6e-13 Score=104.42 Aligned_cols=81 Identities=28% Similarity=0.432 Sum_probs=76.4
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEE
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVK 213 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~ 213 (305)
....+|||+||+..++++.|.++|-+.|.|..++|.+|+ +...+|||||+|.++|+|+-||+.||...+.| ++|+|+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYg--rpIrv~ 84 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYG--RPIRVN 84 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcC--ceeEEE
Confidence 345799999999999999999999999999999999999 77899999999999999999999999999999 889999
Q ss_pred eccC
Q psy4086 214 FADS 217 (305)
Q Consensus 214 ~a~~ 217 (305)
-+..
T Consensus 85 kas~ 88 (203)
T KOG0131|consen 85 KASA 88 (203)
T ss_pred eccc
Confidence 9883
No 95
>KOG1456|consensus
Probab=99.38 E-value=2.7e-10 Score=99.31 Aligned_cols=152 Identities=18% Similarity=0.239 Sum_probs=116.7
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHh-------ccCcccceec-
Q psy4086 59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKAL-------QDKGIHAQMA- 130 (305)
Q Consensus 59 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l-------~g~~i~~~~~- 130 (305)
-.|.|++|-..++|.||.+.++.||.|..+..+..+. -|.|+|+|.+.|+.++.-- +|+.-.....
T Consensus 32 pvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r------~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NySt 105 (494)
T KOG1456|consen 32 PVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKR------QALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYST 105 (494)
T ss_pred ceEEEeccccccchhHHHHHHhcCCceEEEEeccccc------eeeeeeccccchhhheehhccCcccccCchhhcccch
Confidence 4599999999999999999999999998887765442 7999999999999988642 1211111111
Q ss_pred ----c---cccCCCCc---eEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCC
Q psy4086 131 ----R---QQEQDPTN---LYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNG 200 (305)
Q Consensus 131 ----~---~~~~~~~~---l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 200 (305)
+ ......++ +.|-|--+.+|.+.|..++...|.|..|.|++. +| -.|.|+|++.+.|++|.++|||
T Consensus 106 sq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-ng---VQAmVEFdsv~~AqrAk~alNG 181 (494)
T KOG1456|consen 106 SQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-NG---VQAMVEFDSVEVAQRAKAALNG 181 (494)
T ss_pred hhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-cc---eeeEEeechhHHHHHHHhhccc
Confidence 1 11112223 235566778999999999999999999998876 33 2699999999999999999999
Q ss_pred CCCCCCCccEEEEeccCCCc
Q psy4086 201 STLPGSKEPLLVKFADSGLK 220 (305)
Q Consensus 201 ~~~~g~~~~l~v~~a~~~~~ 220 (305)
..|...-..|+|+||++.+.
T Consensus 182 ADIYsGCCTLKIeyAkP~rl 201 (494)
T KOG1456|consen 182 ADIYSGCCTLKIEYAKPTRL 201 (494)
T ss_pred ccccccceeEEEEecCccee
Confidence 98865557899999998543
No 96
>KOG0114|consensus
Probab=99.38 E-value=3.1e-12 Score=91.70 Aligned_cols=78 Identities=23% Similarity=0.366 Sum_probs=71.3
Q ss_pred CCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEecc
Q psy4086 137 PTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFAD 216 (305)
Q Consensus 137 ~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~ 216 (305)
.+-|||.|||+++|.++..++|.+||.|..++|-..+ .-+|-|||.|++..+|.+|++.|+|..+.+ +.|.|-|..
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k--~TrGTAFVVYedi~dAk~A~dhlsg~n~~~--ryl~vlyyq 93 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK--ETRGTAFVVYEDIFDAKKACDHLSGYNVDN--RYLVVLYYQ 93 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCcc--CcCceEEEEehHhhhHHHHHHHhcccccCC--ceEEEEecC
Confidence 4669999999999999999999999999999998776 458899999999999999999999999999 889999876
Q ss_pred CC
Q psy4086 217 SG 218 (305)
Q Consensus 217 ~~ 218 (305)
..
T Consensus 94 ~~ 95 (124)
T KOG0114|consen 94 PE 95 (124)
T ss_pred HH
Confidence 53
No 97
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.37 E-value=5.7e-12 Score=87.13 Aligned_cols=74 Identities=38% Similarity=0.715 Sum_probs=67.9
Q ss_pred ceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q psy4086 139 NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKF 214 (305)
Q Consensus 139 ~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~ 214 (305)
+|+|+|||..+++++|+++|+.+|.|..+.+..+..+..+++|||+|.+.++|..|++.+++..+.+ +.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~--~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGG--RPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECC--eEEEEeC
Confidence 5899999999999999999999999999999988755778999999999999999999999999998 6688764
No 98
>KOG1456|consensus
Probab=99.35 E-value=1.2e-10 Score=101.49 Aligned_cols=158 Identities=18% Similarity=0.228 Sum_probs=123.7
Q ss_pred CCCCCCCeEEEcCCCCC-CcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 53 PEQLSKTNLYIRGLTQD-TTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 53 ~~~~~~~~l~V~~Lp~~-~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
......+.++|-+|... +.-+.|.++|..||.|++|+.++.+ .|.|.|++.|..+.++|+..||+..+.+..+.
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~ 356 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLN 356 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEE
Confidence 33456788999999987 7788999999999999999999877 35899999999999999999987655443332
Q ss_pred --------------------------------------------cccCCCCceEEecCCCCCCHHHHHHHHhhCCC-eEE
Q psy4086 132 --------------------------------------------QQEQDPTNLYIANLPLNFKECDLESLLAKYVT-VVS 166 (305)
Q Consensus 132 --------------------------------------------~~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~-v~~ 166 (305)
.-..+++.|..-|.|..+||+.|.++|...+. .++
T Consensus 357 v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~s 436 (494)
T KOG1456|consen 357 VCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTS 436 (494)
T ss_pred EeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcce
Confidence 11123467888999999999999999976644 467
Q ss_pred EEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCC--CccEEEEecc
Q psy4086 167 TRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGS--KEPLLVKFAD 216 (305)
Q Consensus 167 v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~--~~~l~v~~a~ 216 (305)
++|+..++.++ .-+.++|++.++|.+||..||...|++- +-+..++++-
T Consensus 437 vkvFp~kserS-ssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcf 487 (494)
T KOG1456|consen 437 VKVFPLKSERS-SSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCF 487 (494)
T ss_pred EEeeccccccc-ccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeee
Confidence 78777764333 3589999999999999999999988652 2455555543
No 99
>KOG0226|consensus
Probab=99.34 E-value=2.5e-12 Score=106.60 Aligned_cols=156 Identities=18% Similarity=0.303 Sum_probs=130.4
Q ss_pred eEEEcCCCCCCcHHH-H--HHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc-----
Q psy4086 60 NLYIRGLTQDTTDKD-L--INMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR----- 131 (305)
Q Consensus 60 ~l~V~~Lp~~~t~~~-L--~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~----- 131 (305)
..+++++-..+..+- | ...|+.+-.++..+++++. .+.-++++|+.|...+.-.++..+-+++.+....++
T Consensus 98 ~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gt 176 (290)
T KOG0226|consen 98 RPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGT 176 (290)
T ss_pred cccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceeecccc
Confidence 367777777766555 4 6788888888888888887 477889999999998888888877777777665333
Q ss_pred --------cccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCC
Q psy4086 132 --------QQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGST 202 (305)
Q Consensus 132 --------~~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 202 (305)
....+..+||+|.|..+++++.|-..|.+|-.....++++|+ +|+++||+||.|.+.+++.+|+..|||+.
T Consensus 177 swedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gky 256 (290)
T KOG0226|consen 177 SWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKY 256 (290)
T ss_pred ccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccc
Confidence 444556789999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred CCCCCccEEEEeccCC
Q psy4086 203 LPGSKEPLLVKFADSG 218 (305)
Q Consensus 203 ~~g~~~~l~v~~a~~~ 218 (305)
++. ++|+++-...+
T Consensus 257 Vgs--rpiklRkS~wk 270 (290)
T KOG0226|consen 257 VGS--RPIKLRKSEWK 270 (290)
T ss_pred ccc--chhHhhhhhHH
Confidence 998 67776655443
No 100
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.34 E-value=4.5e-12 Score=110.58 Aligned_cols=79 Identities=34% Similarity=0.627 Sum_probs=75.3
Q ss_pred CCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEec
Q psy4086 137 PTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFA 215 (305)
Q Consensus 137 ~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a 215 (305)
.++|||+|||..+++++|+++|..||.|..+.+..++ ++.++|||||+|.+.++|..|++.+++..|.+ ++|.|.++
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~--~~~~v~~~ 192 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEG--RPLRVQKA 192 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECC--ceeEeecc
Confidence 5899999999999999999999999999999999997 89999999999999999999999999999999 77999997
Q ss_pred cC
Q psy4086 216 DS 217 (305)
Q Consensus 216 ~~ 217 (305)
..
T Consensus 193 ~~ 194 (306)
T COG0724 193 QP 194 (306)
T ss_pred cc
Confidence 53
No 101
>KOG0132|consensus
Probab=99.34 E-value=4e-11 Score=113.12 Aligned_cols=78 Identities=17% Similarity=0.396 Sum_probs=72.2
Q ss_pred CCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEecc
Q psy4086 137 PTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFAD 216 (305)
Q Consensus 137 ~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~ 216 (305)
++|||||.|+.+++|+||..+|+.||.|.+|.++ .+++||||......+|.+|+.+|+...+.. +.|+|.|+.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li-----~~R~cAfI~M~~RqdA~kalqkl~n~kv~~--k~Iki~Wa~ 493 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI-----PPRGCAFIKMVRRQDAEKALQKLSNVKVAD--KTIKIAWAV 493 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeec-----cCCceeEEEEeehhHHHHHHHHHhcccccc--eeeEEeeec
Confidence 3789999999999999999999999999999998 568999999999999999999999999998 779999998
Q ss_pred CCCcC
Q psy4086 217 SGLKK 221 (305)
Q Consensus 217 ~~~~~ 221 (305)
.+..+
T Consensus 494 g~G~k 498 (894)
T KOG0132|consen 494 GKGPK 498 (894)
T ss_pred cCCcc
Confidence 76655
No 102
>KOG0111|consensus
Probab=99.32 E-value=1.2e-12 Score=106.24 Aligned_cols=99 Identities=27% Similarity=0.440 Sum_probs=79.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecccccCC
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQD 136 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~~~~~ 136 (305)
.+++||||+|..++||.-|...|-.||+|.+|.+..|..+.+.||||||+|...|||.+||..||+.++.++.++..-..
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 56789999999999999999999999999999999999999999999999999999999999998877777766644444
Q ss_pred CCceEEecC-CCCCCHHHHH
Q psy4086 137 PTNLYIANL-PLNFKECDLE 155 (305)
Q Consensus 137 ~~~l~V~nl-p~~~te~~l~ 155 (305)
+.+|--+.- |.+.+++.|+
T Consensus 89 P~kikegsqkPvWADDdWlk 108 (298)
T KOG0111|consen 89 PEKIKEGSQKPVWADDDWLK 108 (298)
T ss_pred CccccCCCCCCcccCcHHHH
Confidence 433332222 3344444443
No 103
>KOG0109|consensus
Probab=99.31 E-value=2.3e-12 Score=108.68 Aligned_cols=73 Identities=32% Similarity=0.516 Sum_probs=68.3
Q ss_pred CceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEeccC
Q psy4086 138 TNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADS 217 (305)
Q Consensus 138 ~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~~ 217 (305)
.+|||||||..+++.+|+.+|++||+|++|.|+++ |+||..++...|+.||+.|||..|.| ..|.|+-+++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-------YgFVHiEdktaaedairNLhgYtLhg--~nInVeaSks 73 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-------YGFVHIEDKTAAEDAIRNLHGYTLHG--VNINVEASKS 73 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc-------cceEEeecccccHHHHhhcccceecc--eEEEEEeccc
Confidence 57999999999999999999999999999999944 99999999999999999999999999 6699998887
Q ss_pred CC
Q psy4086 218 GL 219 (305)
Q Consensus 218 ~~ 219 (305)
+.
T Consensus 74 Ks 75 (346)
T KOG0109|consen 74 KS 75 (346)
T ss_pred cC
Confidence 73
No 104
>KOG0120|consensus
Probab=99.31 E-value=4.3e-12 Score=116.77 Aligned_cols=156 Identities=22% Similarity=0.411 Sum_probs=125.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcc-----------C-CeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQY-----------G-PIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKG 124 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~-----------G-~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~ 124 (305)
..+.++|+++++.++++++-.+|..- | .+..+.+-..+ .|||++|.+.++|..|+. +++..
T Consensus 174 q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~------nfa~ie~~s~~~at~~~~-~~~~~ 246 (500)
T KOG0120|consen 174 QARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEK------NFAFIEFRSISEATEAMA-LDGII 246 (500)
T ss_pred hhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccc------cceeEEecCCCchhhhhc-ccchh
Confidence 34569999999999999999988643 3 25666655444 499999999999999987 44432
Q ss_pred ccceecc------------------------------cccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-
Q psy4086 125 IHAQMAR------------------------------QQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN- 173 (305)
Q Consensus 125 i~~~~~~------------------------------~~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~- 173 (305)
+.+...+ ......+++||++||..+++++++++...||.+...+++.+.
T Consensus 247 f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~ 326 (500)
T KOG0120|consen 247 FEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSA 326 (500)
T ss_pred hCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccc
Confidence 2222211 112234779999999999999999999999999999999998
Q ss_pred CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEeccCCCcC
Q psy4086 174 NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKK 221 (305)
Q Consensus 174 ~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~~~~~~ 221 (305)
+|.++||||.+|.+......|+..|||..+.+ +.|.|..|......
T Consensus 327 ~g~skg~af~ey~dpsvtd~A~agLnGm~lgd--~~lvvq~A~~g~~~ 372 (500)
T KOG0120|consen 327 TGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGD--KKLVVQRAIVGASN 372 (500)
T ss_pred cccccceeeeeeeCCcchhhhhcccchhhhcC--ceeEeehhhccchh
Confidence 78999999999999999999999999999999 56999998875443
No 105
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.30 E-value=1.8e-11 Score=84.57 Aligned_cols=70 Identities=33% Similarity=0.567 Sum_probs=63.4
Q ss_pred eEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceec
Q psy4086 60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMA 130 (305)
Q Consensus 60 ~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~ 130 (305)
+|+|+|||..+++++|+++|+.||.|..+.+..++.+ ..+|+|||+|.+.++|..|++.+++..+.++.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~ 70 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPL 70 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 4899999999999999999999999999999988754 778999999999999999999999887666543
No 106
>KOG4211|consensus
Probab=99.30 E-value=2.3e-10 Score=103.25 Aligned_cols=145 Identities=15% Similarity=0.204 Sum_probs=107.6
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhccCCeeE-EEEeeCCCCCCccceEEEEecchhhHHHHHHHhc----cCcccceecc-
Q psy4086 58 KTNLYIRGLTQDTTDKDLINMCSQYGPIIS-TKAILDKTTNKCRGYGFVDFESGGYALAAVKALQ----DKGIHAQMAR- 131 (305)
Q Consensus 58 ~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~-~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~----g~~i~~~~~~- 131 (305)
...|-+++||+.||++||.++|+..-.|.. +.++.+. -+++.|-|||+|++.+.|++|+.... .+-|.+-.+.
T Consensus 103 d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss~ 181 (510)
T KOG4211|consen 103 DGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSSR 181 (510)
T ss_pred CceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhHH
Confidence 345999999999999999999997755544 4455665 47899999999999999999997521 1111110000
Q ss_pred ------------------------------------------------------------------------------cc
Q psy4086 132 ------------------------------------------------------------------------------QQ 133 (305)
Q Consensus 132 ------------------------------------------------------------------------------~~ 133 (305)
..
T Consensus 182 ~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~~ 261 (510)
T KOG4211|consen 182 AEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYPV 261 (510)
T ss_pred HHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccCC
Confidence 00
Q ss_pred c----------------CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHH
Q psy4086 134 E----------------QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQL 197 (305)
Q Consensus 134 ~----------------~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 197 (305)
. .....+...+||+..++.+|..+|+..- ...|.|-...+|+..|-|+|+|.+.++|..|+..
T Consensus 262 ~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~-p~~v~i~ig~dGr~TGEAdveF~t~edav~Amsk 340 (510)
T KOG4211|consen 262 SSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLN-PYRVHIEIGPDGRATGEADVEFATGEDAVGAMGK 340 (510)
T ss_pred CCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCC-ceeEEEEeCCCCccCCcceeecccchhhHhhhcc
Confidence 0 0013466789999999999999998764 4478888888899999999999999999999863
Q ss_pred hCCCCCCC
Q psy4086 198 FNGSTLPG 205 (305)
Q Consensus 198 l~g~~~~g 205 (305)
++..+..
T Consensus 341 -d~anm~h 347 (510)
T KOG4211|consen 341 -DGANMGH 347 (510)
T ss_pred -CCcccCc
Confidence 4455554
No 107
>KOG0130|consensus
Probab=99.29 E-value=6.2e-12 Score=94.43 Aligned_cols=76 Identities=25% Similarity=0.448 Sum_probs=69.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceec
Q psy4086 55 QLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMA 130 (305)
Q Consensus 55 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~ 130 (305)
....-.|||.++..++||++|.+.|..||+|+.+.+..|+.||-.||||+|+|.+.++|++|+..+||..|..+.+
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v 144 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNV 144 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCce
Confidence 3344579999999999999999999999999999999999999999999999999999999999999887766543
No 108
>KOG4210|consensus
Probab=99.29 E-value=7.4e-12 Score=109.53 Aligned_cols=162 Identities=15% Similarity=0.256 Sum_probs=134.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceec------
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMA------ 130 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~------ 130 (305)
..+++|++++...+.+.++..++..+|.+..+.+........++|++.+.|...+.+..|+.....+.+.....
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 46789999999999999999999999988888888877788999999999999999999998532212111111
Q ss_pred -----------ccccCCCCceE-EecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHH
Q psy4086 131 -----------RQQEQDPTNLY-IANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQL 197 (305)
Q Consensus 131 -----------~~~~~~~~~l~-V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~ 197 (305)
+.......++| |++|+..+++++|+.+|..+|.|..+++..++ ++.+++||+|+|.....+..++..
T Consensus 167 ~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~ 246 (285)
T KOG4210|consen 167 RRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND 246 (285)
T ss_pred cccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc
Confidence 11222335566 99999999999999999999999999999988 899999999999999999999987
Q ss_pred hCCCCCCCCCccEEEEeccCCCcC
Q psy4086 198 FNGSTLPGSKEPLLVKFADSGLKK 221 (305)
Q Consensus 198 l~g~~~~g~~~~l~v~~a~~~~~~ 221 (305)
+...+.+ +++.+.+.......
T Consensus 247 -~~~~~~~--~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 247 -QTRSIGG--RPLRLEEDEPRPKS 267 (285)
T ss_pred -ccCcccC--cccccccCCCCccc
Confidence 7788888 78999998876444
No 109
>KOG0128|consensus
Probab=99.28 E-value=8.6e-13 Score=125.50 Aligned_cols=149 Identities=18% Similarity=0.222 Sum_probs=128.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecccccCC
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQD 136 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~~~~~ 136 (305)
..+++||.||+..+.+.+|...|..+|.+..+.+......++.+|+|+|+|.+++++.+||.-.++..+.
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g---------- 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG---------- 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh----------
Confidence 3467999999999999999999999998887777766677999999999999999999999854433332
Q ss_pred CCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEecc
Q psy4086 137 PTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFAD 216 (305)
Q Consensus 137 ~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~ 216 (305)
...++|.|.|+..|.++|+.++..+|.+++++++..+.|+++|.|+|.|.+..++.+++...+...+... .+.|...+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~--~~~v~vsn 813 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKREN--NGEVQVSN 813 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhc--CccccccC
Confidence 4579999999999999999999999999999999999999999999999999999999988777766663 36666655
Q ss_pred C
Q psy4086 217 S 217 (305)
Q Consensus 217 ~ 217 (305)
+
T Consensus 814 p 814 (881)
T KOG0128|consen 814 P 814 (881)
T ss_pred C
Confidence 4
No 110
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.28 E-value=1.4e-11 Score=81.25 Aligned_cols=56 Identities=29% Similarity=0.581 Sum_probs=50.5
Q ss_pred HHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEec
Q psy4086 154 LESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFA 215 (305)
Q Consensus 154 l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a 215 (305)
|+++|++||.|.++.+..+. +++|||+|.+.++|.+|++.|||..+.| ++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g--~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNG--RPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETT--EEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECC--cEEEEEEC
Confidence 68999999999999998663 5899999999999999999999999999 77999985
No 111
>smart00361 RRM_1 RNA recognition motif.
Probab=99.27 E-value=1.5e-11 Score=85.12 Aligned_cols=60 Identities=22% Similarity=0.338 Sum_probs=53.8
Q ss_pred HHHHHHHHh----ccCCeeEEE-EeeCCCC--CCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 72 DKDLINMCS----QYGPIISTK-AILDKTT--NKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 72 ~~~L~~~f~----~~G~i~~~~-i~~~~~~--g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
+++|+++|+ +||.|.++. |+.++.+ ++++|||||+|.+.++|.+|++.|||+.+.++.++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~ 68 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVK 68 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 678999998 999999995 7777766 89999999999999999999999999999887654
No 112
>smart00361 RRM_1 RNA recognition motif.
Probab=99.27 E-value=1.8e-11 Score=84.63 Aligned_cols=60 Identities=22% Similarity=0.325 Sum_probs=53.2
Q ss_pred HHHHHHHHh----hCCCeEEEE-EeeCC-C--CCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEE
Q psy4086 151 ECDLESLLA----KYVTVVSTR-ILRDN-N--NTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLV 212 (305)
Q Consensus 151 e~~l~~~F~----~~g~v~~v~-i~~~~-~--g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v 212 (305)
+++|+++|+ +||.|.++. |..++ + +.++||+||+|.+.++|.+|+..|||..+.| +.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~g--r~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDG--RTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECC--EEEEe
Confidence 578888888 999999995 66665 5 8899999999999999999999999999999 66765
No 113
>KOG0112|consensus
Probab=99.26 E-value=5.6e-12 Score=120.52 Aligned_cols=162 Identities=14% Similarity=0.120 Sum_probs=138.4
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 52 GPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 52 ~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
..+...+++||+|||+..+++.+|+..|..+|.|.+|.|-.-+ -+.-..|+||.|.+.+.+-.|+.++.+..|.....+
T Consensus 366 ~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r 444 (975)
T KOG0112|consen 366 LDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHR 444 (975)
T ss_pred ccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccc
Confidence 3456678899999999999999999999999999999986654 355566999999999999999999888776544333
Q ss_pred -----cccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCC
Q psy4086 132 -----QQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGS 206 (305)
Q Consensus 132 -----~~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 206 (305)
.+....+.+|+++|..++....|...|..||.|..|.+-.. .-||+|.|++...|+.|++.|-|..|.+-
T Consensus 445 ~glG~~kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg-----q~yayi~yes~~~aq~a~~~~rgap~G~P 519 (975)
T KOG0112|consen 445 IGLGQPKSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG-----QPYAYIQYESPPAAQAATHDMRGAPLGGP 519 (975)
T ss_pred ccccccccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC-----CcceeeecccCccchhhHHHHhcCcCCCC
Confidence 24455678999999999999999999999999998776643 45999999999999999999999999998
Q ss_pred CccEEEEeccCCC
Q psy4086 207 KEPLLVKFADSGL 219 (305)
Q Consensus 207 ~~~l~v~~a~~~~ 219 (305)
++.|+|.|+....
T Consensus 520 ~~r~rvdla~~~~ 532 (975)
T KOG0112|consen 520 PRRLRVDLASPPG 532 (975)
T ss_pred CcccccccccCCC
Confidence 8899999998743
No 114
>KOG0415|consensus
Probab=99.14 E-value=7.7e-11 Score=102.03 Aligned_cols=84 Identities=23% Similarity=0.392 Sum_probs=77.9
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEE
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVK 213 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~ 213 (305)
.+.+.|||-.|.+-+++++|.-+|+.||.|.+|.|++|+ +|.+-.||||+|++.+++++|.-.|++..|+. +.|.|.
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDD--rRIHVD 314 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDD--RRIHVD 314 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeecc--ceEEee
Confidence 345789999999999999999999999999999999999 99999999999999999999999999999999 669999
Q ss_pred eccCCCc
Q psy4086 214 FADSGLK 220 (305)
Q Consensus 214 ~a~~~~~ 220 (305)
|.....+
T Consensus 315 FSQSVsk 321 (479)
T KOG0415|consen 315 FSQSVSK 321 (479)
T ss_pred hhhhhhh
Confidence 9876544
No 115
>KOG4206|consensus
Probab=99.11 E-value=2.3e-10 Score=93.88 Aligned_cols=79 Identities=19% Similarity=0.439 Sum_probs=72.3
Q ss_pred CceEEecCCCCCCHHHHHH----HHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEE
Q psy4086 138 TNLYIANLPLNFKECDLES----LLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVK 213 (305)
Q Consensus 138 ~~l~V~nlp~~~te~~l~~----~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~ 213 (305)
.||||.||+..+..++|+. +|++||.|.+|...... +.||.|||.|.+.+.|..|+.+|+|..+.| ++++|.
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~--KmRGQA~VvFk~~~~As~A~r~l~gfpFyg--K~mriq 85 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTP--KMRGQAFVVFKETEAASAALRALQGFPFYG--KPMRIQ 85 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCC--CccCceEEEecChhHHHHHHHHhcCCcccC--chhhee
Confidence 3999999999999999888 99999999998877653 789999999999999999999999999999 889999
Q ss_pred eccCCCc
Q psy4086 214 FADSGLK 220 (305)
Q Consensus 214 ~a~~~~~ 220 (305)
||..+..
T Consensus 86 yA~s~sd 92 (221)
T KOG4206|consen 86 YAKSDSD 92 (221)
T ss_pred cccCccc
Confidence 9997654
No 116
>KOG4208|consensus
Probab=99.06 E-value=4.9e-10 Score=90.52 Aligned_cols=81 Identities=22% Similarity=0.408 Sum_probs=71.1
Q ss_pred CCCCCCCCCCeEEEcCCCCCCcHHHHHHHHhcc-CCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccce
Q psy4086 50 PTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQY-GPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQ 128 (305)
Q Consensus 50 ~~~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~-G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~ 128 (305)
..........-+||..+|.-+.+.+|..+|.+| |.|..+++-+++.||.++|||||+|++++.|.-|-+.||++-+..+
T Consensus 41 ~~~p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~ 120 (214)
T KOG4208|consen 41 REKPEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEH 120 (214)
T ss_pred ccCCccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhh
Confidence 334445556669999999999999999999998 7888899889999999999999999999999999999999988776
Q ss_pred ec
Q psy4086 129 MA 130 (305)
Q Consensus 129 ~~ 130 (305)
.+
T Consensus 121 lL 122 (214)
T KOG4208|consen 121 LL 122 (214)
T ss_pred ee
Confidence 54
No 117
>KOG4661|consensus
Probab=99.04 E-value=1.4e-09 Score=99.69 Aligned_cols=77 Identities=27% Similarity=0.522 Sum_probs=67.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 55 QLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 55 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
....++|||.+|...+...+|++||++||+|+..+|+++..+--.+.|+||++.+.++|.+||+.|+-..++++++.
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmIS 478 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMIS 478 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeee
Confidence 33557899999999999999999999999999999999987777889999999999999999999776666665554
No 118
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.04 E-value=7e-10 Score=73.08 Aligned_cols=52 Identities=27% Similarity=0.485 Sum_probs=45.5
Q ss_pred HHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 75 LINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 75 L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
|+++|++||+|.++.+..+. +++|||+|.+.++|++|++.|||..+.++.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~ 52 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLK 52 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 68999999999999997654 57999999999999999999999998887654
No 119
>KOG0116|consensus
Probab=99.04 E-value=2e-09 Score=98.20 Aligned_cols=81 Identities=17% Similarity=0.320 Sum_probs=67.7
Q ss_pred CceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEecc
Q psy4086 138 TNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFAD 216 (305)
Q Consensus 138 ~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~ 216 (305)
.+|||+|||.++++++|+++|..||.|+...|.... .++...||||+|.+.++++.||++- -..|++ +.|.|+-.+
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~--~kl~Veek~ 365 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGG--RKLNVEEKR 365 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCC--eeEEEEecc
Confidence 459999999999999999999999999999888765 4455589999999999999999863 456666 679998877
Q ss_pred CCCcC
Q psy4086 217 SGLKK 221 (305)
Q Consensus 217 ~~~~~ 221 (305)
.....
T Consensus 366 ~~~~g 370 (419)
T KOG0116|consen 366 PGFRG 370 (419)
T ss_pred ccccc
Confidence 64444
No 120
>KOG4208|consensus
Probab=99.03 E-value=9.3e-10 Score=88.95 Aligned_cols=82 Identities=21% Similarity=0.319 Sum_probs=73.8
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhC-CCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEE
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKY-VTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLV 212 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~-g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v 212 (305)
.....+||..+|..+.+.+|..+|.++ |.|+.+++-+++ +|.++|||||+|++.+.|.-|.+.||++.+.+ +.|.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e--~lL~c 124 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLME--HLLEC 124 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhh--heeee
Confidence 334668999999999999999999888 778888887887 99999999999999999999999999999999 77999
Q ss_pred EeccCC
Q psy4086 213 KFADSG 218 (305)
Q Consensus 213 ~~a~~~ 218 (305)
.+-.+.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 997664
No 121
>KOG0153|consensus
Probab=99.03 E-value=1.2e-09 Score=94.71 Aligned_cols=79 Identities=22% Similarity=0.341 Sum_probs=68.2
Q ss_pred cccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhC-CCCCCCCCccE
Q psy4086 132 QQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFN-GSTLPGSKEPL 210 (305)
Q Consensus 132 ~~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~-g~~~~g~~~~l 210 (305)
+.+..-.+|||++|-..++|.+|+++|.+||+|+++.+... +++|||+|.+.++|+.|.+++- ...|+| ..|
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G--~Rl 295 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVING--FRL 295 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeeecc--eEE
Confidence 45555688999999999999999999999999999999854 6799999999999999887654 446788 679
Q ss_pred EEEeccC
Q psy4086 211 LVKFADS 217 (305)
Q Consensus 211 ~v~~a~~ 217 (305)
.|.|..+
T Consensus 296 ~i~Wg~~ 302 (377)
T KOG0153|consen 296 KIKWGRP 302 (377)
T ss_pred EEEeCCC
Confidence 9999887
No 122
>KOG4660|consensus
Probab=98.96 E-value=1.3e-09 Score=99.84 Aligned_cols=151 Identities=17% Similarity=0.190 Sum_probs=107.0
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceeccc
Q psy4086 53 PEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQ 132 (305)
Q Consensus 53 ~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~ 132 (305)
..+...++|+|-|||..|++++|+.+|+.||+|++|+. +-..+|..||+|.|..+|++|+++|+++.|.++.++.
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~ 144 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKR 144 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcC
Confidence 34567788999999999999999999999999998654 3445789999999999999999999999888776651
Q ss_pred ccC-----------------------------CCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEE
Q psy4086 133 QEQ-----------------------------DPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFA 183 (305)
Q Consensus 133 ~~~-----------------------------~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV 183 (305)
... ....+ ++.|.+..+...++..|.-+|.+.. +.. +.-+-.-|+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~-~g~l~P~~s~~~~~~~~~~~~~~~~-~~~----~~~~hq~~~ 218 (549)
T KOG4660|consen 145 PGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQL-FGMLSPTRSSILLEHISSVDGSSPG-RET----PLLNHQRFV 218 (549)
T ss_pred CCcccccchhcccchhhhhccchhhcCCCCCCcCCcc-eeeeccchhhhhhhcchhccCcccc-ccc----cchhhhhhh
Confidence 110 11223 3447777777666777777776654 211 112225578
Q ss_pred EecCHHHHHHHHHHhCCCCCCCCCccEEEEeccC
Q psy4086 184 RLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADS 217 (305)
Q Consensus 184 ~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~~ 217 (305)
.|.+..++..+.... |..+.+ ....+.+...
T Consensus 219 ~~~~~~s~a~~~~~~-G~~~s~--~~~v~t~S~~ 249 (549)
T KOG4660|consen 219 EFADNRSYAFSEPRG-GFLISN--SSGVITFSGP 249 (549)
T ss_pred hhccccchhhcccCC-ceecCC--CCceEEecCC
Confidence 888888886665533 566666 3466666554
No 123
>KOG4849|consensus
Probab=98.94 E-value=1.3e-08 Score=88.27 Aligned_cols=89 Identities=22% Similarity=0.328 Sum_probs=71.1
Q ss_pred ccceecccccCCCCceEEecCCCCCCHHHHHHHHhhCCC--eEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCC
Q psy4086 125 IHAQMARQQEQDPTNLYIANLPLNFKECDLESLLAKYVT--VVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGS 201 (305)
Q Consensus 125 i~~~~~~~~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~--v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 201 (305)
+..+.+...+...-++|||||-|.+|++||.+....-|. +.+++++.++ +|.+||||+|...+..+..+-++.|-.+
T Consensus 68 ~~~~~~~s~~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k 147 (498)
T KOG4849|consen 68 IGAKPATSSEGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTK 147 (498)
T ss_pred ccCCccccccCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccc
Confidence 333344444555567999999999999999998877664 6777888888 8999999999999999999999999999
Q ss_pred CCCCCCccEEEEe
Q psy4086 202 TLPGSKEPLLVKF 214 (305)
Q Consensus 202 ~~~g~~~~l~v~~ 214 (305)
+|.|.. +..+.|
T Consensus 148 ~iHGQ~-P~V~~~ 159 (498)
T KOG4849|consen 148 TIHGQS-PTVLSY 159 (498)
T ss_pred eecCCC-Ceeecc
Confidence 998853 444444
No 124
>KOG0415|consensus
Probab=98.94 E-value=1e-09 Score=95.16 Aligned_cols=73 Identities=27% Similarity=0.395 Sum_probs=68.3
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 59 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
..|||..|.+-+|+++|.-+|+.||+|..|.|++|..||.+..||||+|.+.+++++|.-.|++.-|+.+.++
T Consensus 240 NVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIH 312 (479)
T KOG0415|consen 240 NVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIH 312 (479)
T ss_pred ceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEE
Confidence 4599999999999999999999999999999999999999999999999999999999999988877776655
No 125
>KOG4205|consensus
Probab=98.94 E-value=9.7e-10 Score=96.65 Aligned_cols=82 Identities=22% Similarity=0.372 Sum_probs=72.7
Q ss_pred CCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q psy4086 136 DPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKF 214 (305)
Q Consensus 136 ~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~ 214 (305)
+.++|||++|.|+++++.|++.|.+||+|.+|.+++|+ ++++++|+||+|.+.+...+++.. .-+.|++ +.|.++.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dg--r~ve~k~ 81 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDG--RSVEPKR 81 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCC--cccccee
Confidence 67899999999999999999999999999999999999 899999999999999998888864 3467888 6688888
Q ss_pred ccCCCc
Q psy4086 215 ADSGLK 220 (305)
Q Consensus 215 a~~~~~ 220 (305)
|.+...
T Consensus 82 av~r~~ 87 (311)
T KOG4205|consen 82 AVSRED 87 (311)
T ss_pred ccCccc
Confidence 777553
No 126
>KOG0533|consensus
Probab=98.94 E-value=4.8e-09 Score=88.80 Aligned_cols=86 Identities=22% Similarity=0.436 Sum_probs=77.2
Q ss_pred cCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEE
Q psy4086 134 EQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVK 213 (305)
Q Consensus 134 ~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~ 213 (305)
+..+.+|+|.||++.++++||+++|+.||.++.+.+..++.|.+.|.|-|.|...++|++|++.+||..++| +++++.
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG--~~mk~~ 157 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDG--RPMKIE 157 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCC--ceeeeE
Confidence 344578999999999999999999999999999999999999999999999999999999999999999999 668887
Q ss_pred eccCCCcC
Q psy4086 214 FADSGLKK 221 (305)
Q Consensus 214 ~a~~~~~~ 221 (305)
........
T Consensus 158 ~i~~~~~~ 165 (243)
T KOG0533|consen 158 IISSPSQS 165 (243)
T ss_pred EecCcccc
Confidence 76654443
No 127
>KOG4307|consensus
Probab=98.92 E-value=1.3e-08 Score=95.29 Aligned_cols=74 Identities=18% Similarity=0.310 Sum_probs=64.8
Q ss_pred CceEEecCCCCCCHHHHHHHHhhCCCe-EEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEE
Q psy4086 138 TNLYIANLPLNFKECDLESLLAKYVTV-VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVK 213 (305)
Q Consensus 138 ~~l~V~nlp~~~te~~l~~~F~~~g~v-~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~ 213 (305)
+.|-|.|+|++++-+||.++|..|-.+ .+|.+.+..+|...|-|.|.|++.++|.+|.+.|+++.|..+. +.+.
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~--V~l~ 942 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRV--VSLR 942 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCccccee--EEEE
Confidence 468899999999999999999999655 4677777779999999999999999999999999999999844 5554
No 128
>KOG0533|consensus
Probab=98.89 E-value=5.3e-09 Score=88.56 Aligned_cols=79 Identities=18% Similarity=0.277 Sum_probs=70.9
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecccc
Q psy4086 54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQ 133 (305)
Q Consensus 54 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~~ 133 (305)
.+...++|+|.|||+.|+++||+++|+.||.+..+-|..++ +|++.|.|-|.|...+||++|++.++|..++++.++..
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 44455789999999999999999999999999999998888 69999999999999999999999999988888776533
No 129
>KOG0153|consensus
Probab=98.86 E-value=4.7e-09 Score=91.02 Aligned_cols=77 Identities=29% Similarity=0.411 Sum_probs=63.7
Q ss_pred CCCCCCCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHh------ccC
Q psy4086 50 PTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKAL------QDK 123 (305)
Q Consensus 50 ~~~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l------~g~ 123 (305)
-..+++..-++|||++|-..++|.+|++.|.+||+|+.+.++..+ ++|||+|.+.+.|+.|.++. +|+
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~ 293 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGF 293 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecce
Confidence 345567777889999999999999999999999999999998654 49999999999999999873 455
Q ss_pred cccceeccc
Q psy4086 124 GIHAQMARQ 132 (305)
Q Consensus 124 ~i~~~~~~~ 132 (305)
.|.+.|.+.
T Consensus 294 Rl~i~Wg~~ 302 (377)
T KOG0153|consen 294 RLKIKWGRP 302 (377)
T ss_pred EEEEEeCCC
Confidence 555555443
No 130
>KOG1457|consensus
Probab=98.85 E-value=2.1e-08 Score=82.03 Aligned_cols=86 Identities=19% Similarity=0.323 Sum_probs=72.4
Q ss_pred CCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC--CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCC-CccEEEE
Q psy4086 137 PTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN--NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGS-KEPLLVK 213 (305)
Q Consensus 137 ~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~--~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~-~~~l~v~ 213 (305)
-+||||.+||.++..-+|..+|..|...+.+.+.... +..++.+|||+|.+..+|++|+.+|||..|+-. ...|+|+
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 5899999999999999999999999888877766654 335678999999999999999999999998653 2579999
Q ss_pred eccCCCcCC
Q psy4086 214 FADSGLKKR 222 (305)
Q Consensus 214 ~a~~~~~~~ 222 (305)
+|+...++.
T Consensus 114 lAKSNtK~k 122 (284)
T KOG1457|consen 114 LAKSNTKRK 122 (284)
T ss_pred ehhcCcccc
Confidence 998755443
No 131
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.84 E-value=2e-08 Score=73.09 Aligned_cols=70 Identities=26% Similarity=0.286 Sum_probs=63.4
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhc--cCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccc
Q psy4086 58 KTNLYIRGLTQDTTDKDLINMCSQ--YGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHA 127 (305)
Q Consensus 58 ~~~l~V~~Lp~~~t~~~L~~~f~~--~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~ 127 (305)
+|||+|.|||...|.++|.+++.. .|..+.+.+..|-.++.+.|||||.|.+.+.|.+..+.++|+.+..
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~ 72 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPN 72 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCcccc
Confidence 478999999999999999998864 3678889999999999999999999999999999999999988754
No 132
>KOG0226|consensus
Probab=98.81 E-value=6e-09 Score=86.73 Aligned_cols=75 Identities=23% Similarity=0.407 Sum_probs=70.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
+..+||.|.|..+++++-|...|.+|-.-...++++|+.||+++||+||.|.+..++..|++++||+-+..+.++
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpik 263 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIK 263 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhH
Confidence 345699999999999999999999999889999999999999999999999999999999999999988887765
No 133
>KOG2193|consensus
Probab=98.80 E-value=1.1e-09 Score=97.00 Aligned_cols=148 Identities=24% Similarity=0.318 Sum_probs=116.0
Q ss_pred eEEEcCCCCCCcHHHHHHHHhccCC-eeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhcc------Ccccceeccc
Q psy4086 60 NLYIRGLTQDTTDKDLINMCSQYGP-IISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQD------KGIHAQMARQ 132 (305)
Q Consensus 60 ~l~V~~Lp~~~t~~~L~~~f~~~G~-i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g------~~i~~~~~~~ 132 (305)
.+||+||.+.++.++|..+|...-. ...-.++ -.||+||.+.+...|.+|++.++| +.+.......
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee-------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 4999999999999999999975411 1111222 246999999999999999998765 4445555556
Q ss_pred ccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEE
Q psy4086 133 QEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLV 212 (305)
Q Consensus 133 ~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v 212 (305)
+....+++-|.|+|..+.++.|..+...||.++.|...... ...-..-|+|...+.+..||..|+|..+.. ..++|
T Consensus 76 kkqrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~--~etavvnvty~~~~~~~~ai~kl~g~Q~en--~~~k~ 151 (584)
T KOG2193|consen 76 KKQRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTD--SETAVVNVTYSAQQQHRQAIHKLNGPQLEN--QHLKV 151 (584)
T ss_pred HHHHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccc--hHHHHHHHHHHHHHHHHHHHHhhcchHhhh--hhhhc
Confidence 66677889999999999999999999999999998764332 122234578999999999999999999999 66999
Q ss_pred EeccCC
Q psy4086 213 KFADSG 218 (305)
Q Consensus 213 ~~a~~~ 218 (305)
.|-...
T Consensus 152 ~YiPde 157 (584)
T KOG2193|consen 152 GYIPDE 157 (584)
T ss_pred ccCchh
Confidence 996553
No 134
>KOG4454|consensus
Probab=98.78 E-value=3.1e-09 Score=86.52 Aligned_cols=80 Identities=16% Similarity=0.134 Sum_probs=72.7
Q ss_pred CCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEec
Q psy4086 136 DPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFA 215 (305)
Q Consensus 136 ~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a 215 (305)
..++|||+|+-..++|+.|.++|-.-|.|.+|.|..+++++.+ ||||.|+++....-|++.+||..+.+ ..|.|++-
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~--~e~q~~~r 84 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEE--DEEQRTLR 84 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhcc--chhhcccc
Confidence 3578999999999999999999999999999999999988888 99999999999999999999999999 55777775
Q ss_pred cCC
Q psy4086 216 DSG 218 (305)
Q Consensus 216 ~~~ 218 (305)
...
T Consensus 85 ~G~ 87 (267)
T KOG4454|consen 85 CGN 87 (267)
T ss_pred cCC
Confidence 543
No 135
>KOG0106|consensus
Probab=98.77 E-value=7.9e-09 Score=85.63 Aligned_cols=76 Identities=26% Similarity=0.518 Sum_probs=67.9
Q ss_pred CceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEeccC
Q psy4086 138 TNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADS 217 (305)
Q Consensus 138 ~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~~ 217 (305)
..+|||+||+.+.+.+|+.+|..||.+..+.+. .+|+||+|.+..+|..||..||+..|.+.. +.|.++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-------~gf~fv~fed~rda~Dav~~l~~~~l~~e~--~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-------NGFGFVEFEDPRDADDAVHDLDGKELCGER--LVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-------cccceeccCchhhhhcccchhcCceeccee--eeeecccc
Confidence 468999999999999999999999999999876 569999999999999999999999999964 99999886
Q ss_pred CCcCC
Q psy4086 218 GLKKR 222 (305)
Q Consensus 218 ~~~~~ 222 (305)
....+
T Consensus 73 ~~~~~ 77 (216)
T KOG0106|consen 73 KRRGR 77 (216)
T ss_pred ccccc
Confidence 54433
No 136
>KOG4661|consensus
Probab=98.70 E-value=3.8e-08 Score=90.37 Aligned_cols=80 Identities=21% Similarity=0.417 Sum_probs=72.5
Q ss_pred CCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEec
Q psy4086 137 PTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFA 215 (305)
Q Consensus 137 ~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a 215 (305)
.++|||.+|...+...+|+.+|++||.|+-.+|+++. +--.+.|+||++.+.++|.+||+.|+-+.|.| +.|.|..+
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHG--rmISVEka 482 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHG--RMISVEKA 482 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcc--eeeeeeec
Confidence 4789999999999999999999999999999999986 44457899999999999999999999999999 77999988
Q ss_pred cCC
Q psy4086 216 DSG 218 (305)
Q Consensus 216 ~~~ 218 (305)
++.
T Consensus 483 KNE 485 (940)
T KOG4661|consen 483 KNE 485 (940)
T ss_pred ccC
Confidence 753
No 137
>KOG4209|consensus
Probab=98.70 E-value=5.4e-08 Score=82.62 Aligned_cols=84 Identities=17% Similarity=0.370 Sum_probs=76.6
Q ss_pred cccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccE
Q psy4086 132 QQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPL 210 (305)
Q Consensus 132 ~~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l 210 (305)
....+...+||+|+.+.+|.+++..+|+.||.|..+.|..|+ .+.+++|+||+|.+.+.++.|+. ||+..|.+ +.+
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~--~~i 172 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPG--PAI 172 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccc--ccc
Confidence 455667889999999999999999999999999999999999 67899999999999999999998 99999999 779
Q ss_pred EEEeccCC
Q psy4086 211 LVKFADSG 218 (305)
Q Consensus 211 ~v~~a~~~ 218 (305)
.|.+....
T Consensus 173 ~vt~~r~~ 180 (231)
T KOG4209|consen 173 EVTLKRTN 180 (231)
T ss_pred eeeeeeee
Confidence 99887764
No 138
>KOG1365|consensus
Probab=98.69 E-value=2.4e-07 Score=81.48 Aligned_cols=142 Identities=13% Similarity=0.164 Sum_probs=100.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHH----hccCcccceecc
Q psy4086 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA----LQDKGIHAQMAR 131 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~----l~g~~i~~~~~~ 131 (305)
.+++.|-.++||+..++.+|..+|+..-...-...+-...-|+..|.+.|.|.|.|.-+.|++. +.++.|.+-.+.
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka~ 137 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKAT 137 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeeccC
Confidence 3455677899999999999999998553322222222233477789999999999999999876 223333332222
Q ss_pred ------------------cccCCCCceEEecCCCCCCHHHHHHHHhhC----CCeEEEEEeeCCCCCcccEEEEEecCHH
Q psy4086 132 ------------------QQEQDPTNLYIANLPLNFKECDLESLLAKY----VTVVSTRILRDNNNTSKGVGFARLESKD 189 (305)
Q Consensus 132 ------------------~~~~~~~~l~V~nlp~~~te~~l~~~F~~~----g~v~~v~i~~~~~g~~~g~afV~f~~~~ 189 (305)
......--|-.++||++.++.++.++|..- |..+.|.+++..+|+..|-|||.|..++
T Consensus 138 ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee 217 (508)
T KOG1365|consen 138 GEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEE 217 (508)
T ss_pred chhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHH
Confidence 001111235668999999999999999532 2355676777668999999999999999
Q ss_pred HHHHHHHH
Q psy4086 190 KCDQMIQL 197 (305)
Q Consensus 190 ~A~~Ai~~ 197 (305)
+|+.|+.+
T Consensus 218 ~aq~aL~k 225 (508)
T KOG1365|consen 218 DAQFALRK 225 (508)
T ss_pred HHHHHHHH
Confidence 99999864
No 139
>KOG4209|consensus
Probab=98.63 E-value=3.7e-08 Score=83.57 Aligned_cols=77 Identities=17% Similarity=0.206 Sum_probs=70.8
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 54 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
.+.+.+.+||+|+.+.+|.+++...|+.||.|..+.|..|+.++.++||+||+|.+.+.++.++. |||..|..+.+.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~ 173 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIE 173 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccce
Confidence 45566779999999999999999999999999999999999999999999999999999999999 999988887654
No 140
>KOG4307|consensus
Probab=98.61 E-value=1e-07 Score=89.44 Aligned_cols=156 Identities=11% Similarity=-0.022 Sum_probs=117.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhc----cCcccceecc
Q psy4086 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQ----DKGIHAQMAR 131 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~----g~~i~~~~~~ 131 (305)
.+++.+-+.+.+++..+.|++++|... .|..+.|..+...+...|-++|+|....++.+|++.-+ .+.|+....-
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPG 387 (944)
T ss_pred chhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCC
Confidence 456667788999999999999999744 35667777777666668999999999999999987511 1212111100
Q ss_pred -----------------------------------------cccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEE-EEE
Q psy4086 132 -----------------------------------------QQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVS-TRI 169 (305)
Q Consensus 132 -----------------------------------------~~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~-v~i 169 (305)
.......+|||..||..+++.++.++|...-.|++ |.|
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 11112367999999999999999999998777877 666
Q ss_pred eeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q psy4086 170 LRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKF 214 (305)
Q Consensus 170 ~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~ 214 (305)
-+..+++.++.|||.|..++++..|+..-+...+.. +.|+|.-
T Consensus 468 t~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~--r~irv~s 510 (944)
T KOG4307|consen 468 TRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGH--RIIRVDS 510 (944)
T ss_pred ccCCcccccchhhheeccccccchhhhcccccccCc--eEEEeec
Confidence 666688899999999999999999987666555655 6688765
No 141
>KOG0116|consensus
Probab=98.60 E-value=1.2e-07 Score=86.61 Aligned_cols=63 Identities=25% Similarity=0.478 Sum_probs=53.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHH
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~ 119 (305)
...+|||+|||+++++++|+++|+.||.|++..|....-.+....||||+|.+.+++..||++
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A 349 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA 349 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc
Confidence 344599999999999999999999999999988776543344458999999999999999984
No 142
>KOG4660|consensus
Probab=98.57 E-value=7.5e-08 Score=88.52 Aligned_cols=75 Identities=15% Similarity=0.322 Sum_probs=65.0
Q ss_pred ccccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccE
Q psy4086 131 RQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPL 210 (305)
Q Consensus 131 ~~~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l 210 (305)
.++.....+|+|-|||..+++++|+.+|+.||+|..|+.-.. .++..||+|.|..+|++|+++|++..|.+ +.|
T Consensus 69 ~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~--~~~ 142 (549)
T KOG4660|consen 69 SEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN----KRGIVFVEFYDVRDAERALKALNRREIAG--KRI 142 (549)
T ss_pred CcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc----cCceEEEEEeehHhHHHHHHHHHHHHhhh--hhh
Confidence 344556788999999999999999999999999999765544 47799999999999999999999999999 446
Q ss_pred E
Q psy4086 211 L 211 (305)
Q Consensus 211 ~ 211 (305)
+
T Consensus 143 k 143 (549)
T KOG4660|consen 143 K 143 (549)
T ss_pred c
Confidence 5
No 143
>KOG1548|consensus
Probab=98.56 E-value=2.7e-07 Score=80.21 Aligned_cols=80 Identities=21% Similarity=0.410 Sum_probs=73.3
Q ss_pred CCceEEecCCCCCCHHHHHHHHhhCCCeE--------EEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCc
Q psy4086 137 PTNLYIANLPLNFKECDLESLLAKYVTVV--------STRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKE 208 (305)
Q Consensus 137 ~~~l~V~nlp~~~te~~l~~~F~~~g~v~--------~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 208 (305)
...|||.|||.++|.+++.++|++||.|. .|++-++..|..+|=|+|.|--.++..-||..|++..|.| +
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg--~ 211 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG--K 211 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC--c
Confidence 45699999999999999999999999886 4889999999999999999999999999999999999999 6
Q ss_pred cEEEEeccCC
Q psy4086 209 PLLVKFADSG 218 (305)
Q Consensus 209 ~l~v~~a~~~ 218 (305)
.|+|..|+-.
T Consensus 212 ~~rVerAkfq 221 (382)
T KOG1548|consen 212 KLRVERAKFQ 221 (382)
T ss_pred EEEEehhhhh
Confidence 6999988753
No 144
>KOG0151|consensus
Probab=98.50 E-value=1.8e-07 Score=88.15 Aligned_cols=80 Identities=16% Similarity=0.336 Sum_probs=71.6
Q ss_pred CCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCC----CCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEE
Q psy4086 136 DPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNN----NTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLL 211 (305)
Q Consensus 136 ~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~----g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~ 211 (305)
..++|||+||+..++++.|...|..||.|..++|++.++ .+.+.|+||.|-+..+|++|+..|+|..+.. ..++
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~--~e~K 250 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVME--YEMK 250 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeee--eeee
Confidence 347899999999999999999999999999999999873 3567899999999999999999999999998 5688
Q ss_pred EEeccC
Q psy4086 212 VKFADS 217 (305)
Q Consensus 212 v~~a~~ 217 (305)
+-|++.
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 888654
No 145
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.47 E-value=1.6e-06 Score=63.12 Aligned_cols=81 Identities=22% Similarity=0.274 Sum_probs=68.6
Q ss_pred CceEEecCCCCCCHHHHHHHHhhC--CCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCC--CCccEEE
Q psy4086 138 TNLYIANLPLNFKECDLESLLAKY--VTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPG--SKEPLLV 212 (305)
Q Consensus 138 ~~l~V~nlp~~~te~~l~~~F~~~--g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~~~l~v 212 (305)
+||-|.|||...|.++|.+++... |....+.++.|- ++.+.|||||.|.+.+.|.+-.+.++|..+.. +.+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 578999999999999999998653 566777888886 67889999999999999999999999998863 3467889
Q ss_pred EeccCC
Q psy4086 213 KFADSG 218 (305)
Q Consensus 213 ~~a~~~ 218 (305)
.||+-.
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 998753
No 146
>KOG4676|consensus
Probab=98.44 E-value=9.7e-08 Score=84.10 Aligned_cols=141 Identities=7% Similarity=0.026 Sum_probs=105.4
Q ss_pred eEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCC---CCccceEEEEecchhhHHHHHHHhccCcccceecc-----
Q psy4086 60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTT---NKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR----- 131 (305)
Q Consensus 60 ~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~---g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~----- 131 (305)
.|-|.||.+.+|.++++.||...|+|.++.|+.+... ......|||.|.|...+..|...-|-..|+.-.+.
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~~ 88 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYGD 88 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecCC
Confidence 5999999999999999999999999999999875432 23456899999999999988775443322211111
Q ss_pred ---------------------------------------------------------cccCCCCceEEecCCCCCCHHHH
Q psy4086 132 ---------------------------------------------------------QQEQDPTNLYIANLPLNFKECDL 154 (305)
Q Consensus 132 ---------------------------------------------------------~~~~~~~~l~V~nlp~~~te~~l 154 (305)
..+.-.++++|++|+..+...++
T Consensus 89 ~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~ 168 (479)
T KOG4676|consen 89 EVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPES 168 (479)
T ss_pred CCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchhh
Confidence 00011267999999999999999
Q ss_pred HHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCC
Q psy4086 155 ESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLP 204 (305)
Q Consensus 155 ~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 204 (305)
.++|+.+|+|....+... ...-+|-|+|........|++ .+|..+.
T Consensus 169 ~e~f~r~Gev~ya~~ask---~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 169 GESFERKGEVSYAHTASK---SRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhhhhhcchhhhhhhhcc---CCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 999999999988776544 334567799988888888876 4555554
No 147
>KOG0151|consensus
Probab=98.42 E-value=8.9e-07 Score=83.55 Aligned_cols=78 Identities=27% Similarity=0.399 Sum_probs=67.2
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCC---CCCccceEEEEecchhhHHHHHHHhccCcccceec
Q psy4086 54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKT---TNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMA 130 (305)
Q Consensus 54 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~---~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~ 130 (305)
.+..+++|||+||++.++++.|...|..||+|..++|+.-+. ..+.+-|+||-|-+..||++|++.|+|+.|....+
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 355678899999999999999999999999999999997652 34567799999999999999999999987765544
Q ss_pred c
Q psy4086 131 R 131 (305)
Q Consensus 131 ~ 131 (305)
+
T Consensus 250 K 250 (877)
T KOG0151|consen 250 K 250 (877)
T ss_pred e
Confidence 4
No 148
>KOG4849|consensus
Probab=98.28 E-value=2.6e-05 Score=68.10 Aligned_cols=73 Identities=26% Similarity=0.361 Sum_probs=64.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccC--CeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCccccee
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYG--PIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQM 129 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G--~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~ 129 (305)
.+-.+|||||-|++|++||.+.+...| .+.+++.+.++.+|.+||||+|...+.....+.++.|-.+.|+++.
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~ 153 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQS 153 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCC
Confidence 344599999999999999999998777 5788899999999999999999999999999999988877777754
No 149
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.24 E-value=1e-05 Score=56.30 Aligned_cols=69 Identities=25% Similarity=0.403 Sum_probs=47.7
Q ss_pred CceEEecCCCCCCHH----HHHHHHhhCCC-eEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEE
Q psy4086 138 TNLYIANLPLNFKEC----DLESLLAKYVT-VVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLV 212 (305)
Q Consensus 138 ~~l~V~nlp~~~te~----~l~~~F~~~g~-v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v 212 (305)
..|||.|||.+.+.. -|++++..||. |.+|. .+.|+|.|.+.+.|.+|.+.|+|..+.|++ |.|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~---------~~tAilrF~~~~~A~RA~KRmegEdVfG~k--I~v 71 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS---------GGTAILRFPNQEFAERAQKRMEGEDVFGNK--ISV 71 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSSS----EE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe---------CCEEEEEeCCHHHHHHHHHhhcccccccce--EEE
Confidence 358999999988765 56778888854 55542 457999999999999999999999999954 999
Q ss_pred EeccC
Q psy4086 213 KFADS 217 (305)
Q Consensus 213 ~~a~~ 217 (305)
+|...
T Consensus 72 ~~~~~ 76 (90)
T PF11608_consen 72 SFSPK 76 (90)
T ss_dssp ESS--
T ss_pred EEcCC
Confidence 99754
No 150
>KOG1995|consensus
Probab=98.15 E-value=7.3e-06 Score=72.00 Aligned_cols=83 Identities=18% Similarity=0.299 Sum_probs=73.3
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeE--------EEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCC
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVV--------STRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPG 205 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~--------~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 205 (305)
....+|||-+|+..+++++|.++|.+++.|. .|.|-+++ ++.+|+-|.|.|++...|+.||+-+++..+.+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 3456899999999999999999999999875 35677777 88999999999999999999999999999999
Q ss_pred CCccEEEEeccCCC
Q psy4086 206 SKEPLLVKFADSGL 219 (305)
Q Consensus 206 ~~~~l~v~~a~~~~ 219 (305)
.+|+|.+|....
T Consensus 144 --n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 --NTIKVSLAERRT 155 (351)
T ss_pred --CCchhhhhhhcc
Confidence 559999988755
No 151
>KOG1995|consensus
Probab=98.00 E-value=8.9e-06 Score=71.46 Aligned_cols=78 Identities=21% Similarity=0.267 Sum_probs=68.9
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhccCCee--------EEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCccc
Q psy4086 55 QLSKTNLYIRGLTQDTTDKDLINMCSQYGPII--------STKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIH 126 (305)
Q Consensus 55 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~--------~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~ 126 (305)
....-+|||-+|+..+++++|.++|.+||.|. .|+|.+|+.|+++||-|.|.|.+...|+.||.-++++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 33445699999999999999999999999885 3788899999999999999999999999999999999888
Q ss_pred ceeccc
Q psy4086 127 AQMARQ 132 (305)
Q Consensus 127 ~~~~~~ 132 (305)
...++.
T Consensus 143 gn~ikv 148 (351)
T KOG1995|consen 143 GNTIKV 148 (351)
T ss_pred CCCchh
Confidence 865553
No 152
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.95 E-value=2.1e-05 Score=58.50 Aligned_cols=59 Identities=25% Similarity=0.362 Sum_probs=39.5
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccC
Q psy4086 59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDK 123 (305)
Q Consensus 59 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~ 123 (305)
+.|.|.++...++.++|+++|+.||.|..|.+.+... .|+|.|.+.+.|++|++.+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhc
Confidence 5688999999999999999999999999999876553 6999999999999999986533
No 153
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.86 E-value=2.2e-05 Score=68.26 Aligned_cols=77 Identities=13% Similarity=0.295 Sum_probs=60.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHH------HHHHhccCCeeEEEEeeCCCC-CCccceE--EEEecchhhHHHHHHHhccCcc
Q psy4086 55 QLSKTNLYIRGLTQDTTDKDL------INMCSQYGPIISTKAILDKTT-NKCRGYG--FVDFESGGYALAAVKALQDKGI 125 (305)
Q Consensus 55 ~~~~~~l~V~~Lp~~~t~~~L------~~~f~~~G~i~~~~i~~~~~~-g~~~G~a--fV~f~~~~~A~~a~~~l~g~~i 125 (305)
...+.-+||-+|++.+..++. .++|.+||+|.+|.|-+.-.+ ....+.+ ||+|.+.|+|.+||.+++|..+
T Consensus 111 VvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~ 190 (480)
T COG5175 111 VVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL 190 (480)
T ss_pred eeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccc
Confidence 334556999999999887773 569999999998887654311 1122333 9999999999999999999999
Q ss_pred cceecc
Q psy4086 126 HAQMAR 131 (305)
Q Consensus 126 ~~~~~~ 131 (305)
+++.++
T Consensus 191 DGr~lk 196 (480)
T COG5175 191 DGRVLK 196 (480)
T ss_pred cCceEe
Confidence 988877
No 154
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.84 E-value=5.1e-05 Score=56.46 Aligned_cols=59 Identities=12% Similarity=0.240 Sum_probs=38.8
Q ss_pred CceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCC
Q psy4086 138 TNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGS 201 (305)
Q Consensus 138 ~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 201 (305)
+.|.|.++...++.++|++.|+.||.|..|.+... ..-|+|+|.+.+.|++|++.+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G-----~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG-----DTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT------SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC-----CCEEEEEECCcchHHHHHHHHHhc
Confidence 45788889999999999999999999999888754 347999999999999999877644
No 155
>KOG0115|consensus
Probab=97.81 E-value=6.8e-05 Score=63.02 Aligned_cols=107 Identities=15% Similarity=0.152 Sum_probs=85.9
Q ss_pred hhHHHHHHHhccCcccceecccccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHH
Q psy4086 111 GYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDK 190 (305)
Q Consensus 111 ~~A~~a~~~l~g~~i~~~~~~~~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~ 190 (305)
.-|+.|..+|++.....+.++........|||.||...+.-+.|++.|+.||.|....++.|..++..+-++|.|...-.
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~ 84 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMHAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPN 84 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeeccceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchh
Confidence 45778888899988888887766666688999999999999999999999999999988888888888899999999999
Q ss_pred HHHHHHHhCCCCCCC--CCccEEEEeccC
Q psy4086 191 CDQMIQLFNGSTLPG--SKEPLLVKFADS 217 (305)
Q Consensus 191 A~~Ai~~l~g~~~~g--~~~~l~v~~a~~ 217 (305)
|.+|+..+.-.-+.+ ..++.-|.-..-
T Consensus 85 a~~a~rr~~~~g~~~~~~~~p~~VeP~eq 113 (275)
T KOG0115|consen 85 ARKAARRCREGGFGGTTGGRPVGVEPMEQ 113 (275)
T ss_pred HHHHHHHhccCccccCCCCCccCCChhhc
Confidence 999998874332222 224555554443
No 156
>KOG2314|consensus
Probab=97.81 E-value=4.4e-05 Score=70.67 Aligned_cols=78 Identities=17% Similarity=0.235 Sum_probs=64.9
Q ss_pred CCceEEecCCCCCC------HHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccE
Q psy4086 137 PTNLYIANLPLNFK------ECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPL 210 (305)
Q Consensus 137 ~~~l~V~nlp~~~t------e~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l 210 (305)
...|+|-|+|.--. ...|..+|+++|+|....++.+..|..+||.|++|.+..+|+.|++.|||+.|+.. +.+
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldkn-Htf 136 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKN-HTF 136 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceeccc-ceE
Confidence 45677888876322 24578899999999999999998777999999999999999999999999999876 567
Q ss_pred EEEec
Q psy4086 211 LVKFA 215 (305)
Q Consensus 211 ~v~~a 215 (305)
.|..-
T Consensus 137 ~v~~f 141 (698)
T KOG2314|consen 137 FVRLF 141 (698)
T ss_pred Eeehh
Confidence 77653
No 157
>KOG0128|consensus
Probab=97.80 E-value=2.1e-06 Score=82.76 Aligned_cols=146 Identities=10% Similarity=0.080 Sum_probs=107.4
Q ss_pred CCCeEEEcCCCCCCcHH-HHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceeccc---
Q psy4086 57 SKTNLYIRGLTQDTTDK-DLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQ--- 132 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~-~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~--- 132 (305)
..+...+.++.+..... ..+..|+.+|.|+.+++......-...-+.++.+....+++.|.. ..+..+.++.+..
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~a 648 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGLA 648 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCCCC
Confidence 34557788888887666 567889999999999987633222222388899999999988876 3333333332220
Q ss_pred --------------ccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHH
Q psy4086 133 --------------QEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQL 197 (305)
Q Consensus 133 --------------~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~ 197 (305)
...+..++||.||+..+.+++|...|..++.+..+++.... .++.+|+|+|.|...+++.+||..
T Consensus 649 d~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f 728 (881)
T KOG0128|consen 649 DAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAF 728 (881)
T ss_pred CchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhh
Confidence 00123579999999999999999999999998888777444 678999999999999999999975
Q ss_pred hCCCCC
Q psy4086 198 FNGSTL 203 (305)
Q Consensus 198 l~g~~~ 203 (305)
.+.+.+
T Consensus 729 ~d~~~~ 734 (881)
T KOG0128|consen 729 RDSCFF 734 (881)
T ss_pred hhhhhh
Confidence 544433
No 158
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.79 E-value=0.00013 Score=50.82 Aligned_cols=62 Identities=16% Similarity=0.359 Sum_probs=41.7
Q ss_pred CeEEEcCCCCCCcHHHH----HHHHhccC-CeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceec
Q psy4086 59 TNLYIRGLTQDTTDKDL----INMCSQYG-PIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMA 130 (305)
Q Consensus 59 ~~l~V~~Lp~~~t~~~L----~~~f~~~G-~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~ 130 (305)
+.|+|.|||.+.+...| +.|+..|| +|.+|. .+.|+|.|.+.+.|++|.+.|+|..+.+..+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI 69 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKI 69 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceE
Confidence 46999999999987765 55667887 444431 2479999999999999999999888776543
No 159
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.77 E-value=6.2e-05 Score=48.57 Aligned_cols=52 Identities=17% Similarity=0.280 Sum_probs=41.7
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHH
Q psy4086 59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAV 117 (305)
Q Consensus 59 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~ 117 (305)
++|-|.+.+.+..+.-|+ .|..||+|.++.+-... -+.+|+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~vl~-~F~~fGeI~~~~~~~~~------~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVLE-HFASFGEIVDIYVPEST------NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHHH-HHHhcCCEEEEEcCCCC------cEEEEEECCHHHHHhhC
Confidence 568899999777655554 78899999998876322 28999999999999985
No 160
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.56 E-value=0.00021 Score=62.32 Aligned_cols=80 Identities=14% Similarity=0.302 Sum_probs=62.6
Q ss_pred CCceEEecCCCCCCHHH----H--HHHHhhCCCeEEEEEeeCC-CC-CcccE--EEEEecCHHHHHHHHHHhCCCCCCCC
Q psy4086 137 PTNLYIANLPLNFKECD----L--ESLLAKYVTVVSTRILRDN-NN-TSKGV--GFARLESKDKCDQMIQLFNGSTLPGS 206 (305)
Q Consensus 137 ~~~l~V~nlp~~~te~~----l--~~~F~~~g~v~~v~i~~~~-~g-~~~g~--afV~f~~~~~A~~Ai~~l~g~~~~g~ 206 (305)
..-+||-+|+..+..++ | .++|.+||.|..+.|-+.. .. .-.+. .+|+|.+.++|.+||.+.+|..++|
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG- 192 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG- 192 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC-
Confidence 45689999988876554 2 6789999999998877654 11 11122 3999999999999999999999999
Q ss_pred CccEEEEeccCC
Q psy4086 207 KEPLLVKFADSG 218 (305)
Q Consensus 207 ~~~l~v~~a~~~ 218 (305)
|.|+..|...+
T Consensus 193 -r~lkatYGTTK 203 (480)
T COG5175 193 -RVLKATYGTTK 203 (480)
T ss_pred -ceEeeecCchH
Confidence 77999986653
No 161
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.54 E-value=0.00026 Score=45.68 Aligned_cols=52 Identities=13% Similarity=0.271 Sum_probs=41.0
Q ss_pred CceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHH
Q psy4086 138 TNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMI 195 (305)
Q Consensus 138 ~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai 195 (305)
+.|-|.+.+.+..+. +..+|..||+|+.+.+. ....+.+|+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~-----~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP-----ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC-----CCCcEEEEEECCHHHHHhhC
Confidence 456777777766544 55589999999998876 23558999999999999985
No 162
>KOG0129|consensus
Probab=97.50 E-value=0.0003 Score=64.79 Aligned_cols=63 Identities=19% Similarity=0.327 Sum_probs=58.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHh-ccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHH
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCS-QYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~-~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~ 119 (305)
.++|||||+||.-++.++|..+|+ .||.|..+-|=+|++-+-++|-|=|.|.+...-.+||..
T Consensus 369 prrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 369 PRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 456799999999999999999999 899999999999977788999999999999999999985
No 163
>KOG1855|consensus
Probab=97.49 E-value=0.00015 Score=65.19 Aligned_cols=67 Identities=18% Similarity=0.280 Sum_probs=56.9
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeC---C-C--CC--------cccEEEEEecCHHHHHHHHHHhCC
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRD---N-N--NT--------SKGVGFARLESKDKCDQMIQLFNG 200 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~---~-~--g~--------~~g~afV~f~~~~~A~~Ai~~l~g 200 (305)
...++|.+-|||.+-.-+.|.++|..+|.|..|+|+.. . + +. .+-+|+|+|+..+.|.+|.+.|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 45688999999999888999999999999999999887 3 2 21 145799999999999999998864
Q ss_pred C
Q psy4086 201 S 201 (305)
Q Consensus 201 ~ 201 (305)
.
T Consensus 309 e 309 (484)
T KOG1855|consen 309 E 309 (484)
T ss_pred h
Confidence 4
No 164
>KOG2314|consensus
Probab=97.49 E-value=0.00013 Score=67.70 Aligned_cols=68 Identities=25% Similarity=0.336 Sum_probs=56.8
Q ss_pred CCeEEEcCCCCCCcHH-------HHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccc
Q psy4086 58 KTNLYIRGLTQDTTDK-------DLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHA 127 (305)
Q Consensus 58 ~~~l~V~~Lp~~~t~~-------~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~ 127 (305)
...|+|-|+|. +-.+ -|..+|+++|+|....+..+..+| .+||.|++|.+..+|+.|++.|||+.++-
T Consensus 58 D~vVvv~g~Pv-V~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldk 132 (698)
T KOG2314|consen 58 DSVVVVDGAPV-VGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDK 132 (698)
T ss_pred ceEEEECCCcc-cChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecc
Confidence 34599999985 3332 246689999999999998888655 99999999999999999999999998764
No 165
>KOG4210|consensus
Probab=97.42 E-value=9.5e-05 Score=65.03 Aligned_cols=69 Identities=23% Similarity=0.394 Sum_probs=60.7
Q ss_pred EEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceec
Q psy4086 61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMA 130 (305)
Q Consensus 61 l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~ 130 (305)
.+|++|+.++++++|+..|..+|.|..+++..++.++.++|||+|.|.+...+..++.. +...+....+
T Consensus 188 ~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~ 256 (285)
T KOG4210|consen 188 FFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPL 256 (285)
T ss_pred eeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccc
Confidence 44999999999999999999999999999999999999999999999999999988885 5555544433
No 166
>KOG2202|consensus
Probab=97.35 E-value=0.00013 Score=61.53 Aligned_cols=64 Identities=14% Similarity=0.262 Sum_probs=52.2
Q ss_pred HHHHHHHh-hCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEeccC
Q psy4086 152 CDLESLLA-KYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADS 217 (305)
Q Consensus 152 ~~l~~~F~-~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~~ 217 (305)
+++...|+ +||+|++++|..+-.-.-+|-++|.|...++|++|++.||+.++.| ++|...+..-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G--~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNG--RPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccC--CcceeeecCc
Confidence 34555555 9999999987766533457789999999999999999999999999 7898888553
No 167
>KOG1996|consensus
Probab=97.32 E-value=0.00067 Score=58.18 Aligned_cols=65 Identities=17% Similarity=0.133 Sum_probs=53.5
Q ss_pred HHHHHHHHhhCCCeEEEEEeeCCCC--CcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEeccC
Q psy4086 151 ECDLESLLAKYVTVVSTRILRDNNN--TSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADS 217 (305)
Q Consensus 151 e~~l~~~F~~~g~v~~v~i~~~~~g--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~~ 217 (305)
++++++.+++||.|..|.|+...+. ...---||+|+..++|.+|+-.|||..|.| +.+...|.+-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGG--r~v~A~Fyn~ 366 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGG--RVVSACFYNL 366 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecc--eeeeheeccH
Confidence 4678999999999999998887621 112236999999999999999999999999 6688888664
No 168
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.32 E-value=0.00076 Score=49.50 Aligned_cols=78 Identities=17% Similarity=0.173 Sum_probs=52.6
Q ss_pred CCCceEEecCCCCCCHHHHHHHHhhCCCeEEEE-EeeC-------CCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCC
Q psy4086 136 DPTNLYIANLPLNFKECDLESLLAKYVTVVSTR-ILRD-------NNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSK 207 (305)
Q Consensus 136 ~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~-i~~~-------~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 207 (305)
..+.|.|-+.|.. ....+.+.|++||.|++.. +.++ ..-....+..|+|.+..+|++||. -||..|.|.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~- 81 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGS- 81 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTC-
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCc-
Confidence 3455778888887 5567788999999998764 1111 101345699999999999999997 599999885
Q ss_pred ccEEEEecc
Q psy4086 208 EPLLVKFAD 216 (305)
Q Consensus 208 ~~l~v~~a~ 216 (305)
..+-|.+.+
T Consensus 82 ~mvGV~~~~ 90 (100)
T PF05172_consen 82 LMVGVKPCD 90 (100)
T ss_dssp EEEEEEE-H
T ss_pred EEEEEEEcH
Confidence 456688764
No 169
>KOG3152|consensus
Probab=97.32 E-value=0.00021 Score=60.07 Aligned_cols=75 Identities=17% Similarity=0.193 Sum_probs=63.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCC--------CCccce----EEEEecchhhHHHHHHHhccCc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTT--------NKCRGY----GFVDFESGGYALAAVKALQDKG 124 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~--------g~~~G~----afV~f~~~~~A~~a~~~l~g~~ 124 (305)
..-.||+++||+.+.-.-|+++|++||.|-.|.+.....+ |.++.+ |.|+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4457999999999999999999999999999998877655 333333 5599999999999999999999
Q ss_pred ccceecc
Q psy4086 125 IHAQMAR 131 (305)
Q Consensus 125 i~~~~~~ 131 (305)
|.++...
T Consensus 153 Iggkk~S 159 (278)
T KOG3152|consen 153 IGGKKKS 159 (278)
T ss_pred cCCCCCC
Confidence 9987654
No 170
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.12 E-value=0.0015 Score=47.92 Aligned_cols=71 Identities=11% Similarity=0.163 Sum_probs=45.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEE-EeeCCC------CCCccceEEEEecchhhHHHHHHHhccCcccce
Q psy4086 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTK-AILDKT------TNKCRGYGFVDFESGGYALAAVKALQDKGIHAQ 128 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~-i~~~~~------~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~ 128 (305)
.+.+.|.|-+.|+. ....|.+.|++||.|.+.. +.++.. .-.....-.|+|.++.+|.+||. -||..+.+.
T Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~ 81 (100)
T PF05172_consen 4 DSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGS 81 (100)
T ss_dssp GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTC
T ss_pred cCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCc
Confidence 34567999999988 5566677899999997765 111000 01123388999999999999999 677766543
No 171
>KOG3152|consensus
Probab=97.08 E-value=0.00055 Score=57.67 Aligned_cols=72 Identities=19% Similarity=0.383 Sum_probs=60.4
Q ss_pred CCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-C--------CCccc----EEEEEecCHHHHHHHHHHhCCCC
Q psy4086 136 DPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-N--------NTSKG----VGFARLESKDKCDQMIQLFNGST 202 (305)
Q Consensus 136 ~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~--------g~~~g----~afV~f~~~~~A~~Ai~~l~g~~ 202 (305)
..-.||+++||+.+...-|+++|+.||.|-.|.+.... . |..+. -+.|+|.+...|.++.+.||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 45679999999999999999999999999998877664 2 22221 26799999999999999999999
Q ss_pred CCCCC
Q psy4086 203 LPGSK 207 (305)
Q Consensus 203 ~~g~~ 207 (305)
|.|.+
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99865
No 172
>KOG0115|consensus
Probab=97.07 E-value=0.0017 Score=54.87 Aligned_cols=62 Identities=26% Similarity=0.365 Sum_probs=56.1
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhc
Q psy4086 59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQ 121 (305)
Q Consensus 59 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~ 121 (305)
..|||.||..-+..|.|..-|+.||+|+...++-|. .++..+-++|+|...-.|.+|++.+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhc
Confidence 569999999999999999999999999988887776 47888899999999999999998863
No 173
>KOG1855|consensus
Probab=97.05 E-value=0.00097 Score=60.10 Aligned_cols=71 Identities=18% Similarity=0.225 Sum_probs=59.3
Q ss_pred CCCCCCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeC---CCCCC----------ccceEEEEecchhhHHHHH
Q psy4086 51 TGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILD---KTTNK----------CRGYGFVDFESGGYALAAV 117 (305)
Q Consensus 51 ~~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~---~~~g~----------~~G~afV~f~~~~~A~~a~ 117 (305)
...++...++|.+-|||.+-.-+.|.++|..+|.|..|+|++- +.+.+ .+-+|+|+|...+.|.+|.
T Consensus 224 ~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~ 303 (484)
T KOG1855|consen 224 FDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAR 303 (484)
T ss_pred ccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHH
Confidence 3344567889999999999888999999999999999999876 33221 3568999999999999999
Q ss_pred HHhc
Q psy4086 118 KALQ 121 (305)
Q Consensus 118 ~~l~ 121 (305)
+.|+
T Consensus 304 e~~~ 307 (484)
T KOG1855|consen 304 ELLN 307 (484)
T ss_pred Hhhc
Confidence 9875
No 174
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.98 E-value=0.0053 Score=42.90 Aligned_cols=54 Identities=19% Similarity=0.309 Sum_probs=41.5
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhc
Q psy4086 59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQ 121 (305)
Q Consensus 59 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~ 121 (305)
...+|+ +|.+....||.++|+.||.|. |..+.|- .|||...+.+.|..++..++
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 435555 999999999999999999975 6666554 69999999999999998875
No 175
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.95 E-value=0.0054 Score=40.63 Aligned_cols=54 Identities=28% Similarity=0.308 Sum_probs=45.7
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcc----CCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHh
Q psy4086 58 KTNLYIRGLTQDTTDKDLINMCSQY----GPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKAL 120 (305)
Q Consensus 58 ~~~l~V~~Lp~~~t~~~L~~~f~~~----G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l 120 (305)
..+|+|.+++ +++.++|+.+|..| + ...|..+-|. .|-|.|.+.+.|.+|+..|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~-~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEG-PFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCC-CceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 3459999997 69999999999999 5 4578888776 5899999999999999764
No 176
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.90 E-value=0.0069 Score=40.12 Aligned_cols=56 Identities=9% Similarity=0.220 Sum_probs=45.8
Q ss_pred CCCceEEecCCCCCCHHHHHHHHhhC---CCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHh
Q psy4086 136 DPTNLYIANLPLNFKECDLESLLAKY---VTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLF 198 (305)
Q Consensus 136 ~~~~l~V~nlp~~~te~~l~~~F~~~---g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 198 (305)
.+.+|+|.++. +++.++|+.+|..| .....|.++.|. -|-|.|.+.+.|.+|+.+|
T Consensus 4 rpeavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 4 RPEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eeceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC------cEEEEECCHHHHHHHHHcC
Confidence 45689999985 58889999999988 236688888774 4789999999999999765
No 177
>KOG2202|consensus
Probab=96.79 E-value=0.00053 Score=57.88 Aligned_cols=50 Identities=22% Similarity=0.258 Sum_probs=43.4
Q ss_pred ccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 81 QYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 81 ~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
+||+|++++|..+.. -.-+|-++|.|..+++|++|++.||+..+.++.+.
T Consensus 92 kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ 141 (260)
T KOG2202|consen 92 KYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIH 141 (260)
T ss_pred Hhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcce
Confidence 899999998776652 35678999999999999999999999999988763
No 178
>KOG2416|consensus
Probab=96.62 E-value=0.0024 Score=59.90 Aligned_cols=81 Identities=19% Similarity=0.192 Sum_probs=64.0
Q ss_pred CCCceEEecCCCCCCHHHHHHHHh-hCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCC-CCccEEEE
Q psy4086 136 DPTNLYIANLPLNFKECDLESLLA-KYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPG-SKEPLLVK 213 (305)
Q Consensus 136 ~~~~l~V~nlp~~~te~~l~~~F~-~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-~~~~l~v~ 213 (305)
..+.|||.||-.-+|.-+|++++. .+|.|++. ++ | +-+..|||.|.+.++|.+.+.+|||..+.. +.+.|.+.
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm-D---kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ad 517 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM-D---KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIAD 517 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHH-HH-H---HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEee
Confidence 356799999999999999999998 56667666 22 2 335579999999999999999999987643 33679999
Q ss_pred eccCCCcC
Q psy4086 214 FADSGLKK 221 (305)
Q Consensus 214 ~a~~~~~~ 221 (305)
|+....-.
T Consensus 518 f~~~deld 525 (718)
T KOG2416|consen 518 FVRADELD 525 (718)
T ss_pred ecchhHHH
Confidence 98765443
No 179
>KOG2591|consensus
Probab=96.55 E-value=0.055 Score=50.71 Aligned_cols=73 Identities=10% Similarity=0.185 Sum_probs=53.6
Q ss_pred ccCcccceecccccCCC-CceEEecCCCCCCHHHHHHHHh--hCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHH
Q psy4086 121 QDKGIHAQMARQQEQDP-TNLYIANLPLNFKECDLESLLA--KYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQL 197 (305)
Q Consensus 121 ~g~~i~~~~~~~~~~~~-~~l~V~nlp~~~te~~l~~~F~--~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 197 (305)
-+..++.+..+.+.... |-+.++.||..+-+|+++.+|. .|-.+++|.+-.+. ++ ||+|++..+|+.|...
T Consensus 158 p~VqvDekgekVrp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-----nW-yITfesd~DAQqAyky 231 (684)
T KOG2591|consen 158 PNVQVDEKGEKVRPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-----NW-YITFESDTDAQQAYKY 231 (684)
T ss_pred CCceeccCccccccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-----ce-EEEeecchhHHHHHHH
Confidence 34444444444443334 4467799999999999999995 57889999887653 23 9999999999999876
Q ss_pred hC
Q psy4086 198 FN 199 (305)
Q Consensus 198 l~ 199 (305)
|.
T Consensus 232 lr 233 (684)
T KOG2591|consen 232 LR 233 (684)
T ss_pred HH
Confidence 54
No 180
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.53 E-value=0.0072 Score=47.16 Aligned_cols=55 Identities=18% Similarity=0.343 Sum_probs=44.8
Q ss_pred HHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEeccC
Q psy4086 153 DLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADS 217 (305)
Q Consensus 153 ~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~~ 217 (305)
+|.+.|..||++.-+++..+ .-.|+|.+-+.|.+|+. |+|.++.| +.|+|+...+
T Consensus 52 ~ll~~~~~~GevvLvRfv~~-------~mwVTF~dg~sALaals-~dg~~v~g--~~l~i~LKtp 106 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD-------TMWVTFRDGQSALAALS-LDGIQVNG--RTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT-------CEEEEESSCHHHHHHHH-GCCSEETT--EEEEEEE---
T ss_pred HHHHHHHhCCceEEEEEeCC-------eEEEEECccHHHHHHHc-cCCcEECC--EEEEEEeCCc
Confidence 67888999999998888754 47999999999999996 89999999 7799988665
No 181
>KOG2193|consensus
Probab=96.47 E-value=0.0026 Score=57.35 Aligned_cols=77 Identities=23% Similarity=0.346 Sum_probs=59.1
Q ss_pred CceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCC-CCCCCCccEEEEecc
Q psy4086 138 TNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGS-TLPGSKEPLLVKFAD 216 (305)
Q Consensus 138 ~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~-~~~g~~~~l~v~~a~ 216 (305)
++||++||...++..+|+.+|...-.-.+-.++ ...||+||.+.+...|.+|++.|+|+ ++.| +++.|...-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl-----~k~gyafvd~pdq~wa~kaie~~sgk~elqG--kr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL-----VKSGYAFVDCPDQQWANKAIETLSGKVELQG--KRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee-----eecceeeccCCchhhhhhhHHhhchhhhhcC--ceeeccchh
Confidence 479999999999999999999654111111122 23579999999999999999999987 5777 668888877
Q ss_pred CCCcC
Q psy4086 217 SGLKK 221 (305)
Q Consensus 217 ~~~~~ 221 (305)
.+..+
T Consensus 75 ~kkqr 79 (584)
T KOG2193|consen 75 PKKQR 79 (584)
T ss_pred hHHHH
Confidence 76554
No 182
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.98 E-value=0.087 Score=39.42 Aligned_cols=65 Identities=15% Similarity=0.082 Sum_probs=48.5
Q ss_pred EEEcCCCCCCcHHHHHHHHhccC-CeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccc
Q psy4086 61 LYIRGLTQDTTDKDLINMCSQYG-PIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHA 127 (305)
Q Consensus 61 l~V~~Lp~~~t~~~L~~~f~~~G-~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~ 127 (305)
+.+...|..++.++|..+.+.+- .|..++|++|.. .++=-+.++|.+.++|+...+.+||+.+..
T Consensus 16 ~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 16 CCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 44444555566677776666554 478899998753 355568899999999999999999998753
No 183
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.73 E-value=0.11 Score=38.89 Aligned_cols=65 Identities=18% Similarity=0.267 Sum_probs=49.3
Q ss_pred eEEecCCCCCCHHHHHHHHhhCCC-eEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCC
Q psy4086 140 LYIANLPLNFKECDLESLLAKYVT-VVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPG 205 (305)
Q Consensus 140 l~V~nlp~~~te~~l~~~F~~~g~-v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 205 (305)
+.+...|+.++.++|..+.+.+-. |..++|++|.. .++-.++++|.+.++|.+-.+.+||+.++-
T Consensus 16 ~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~-pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 16 CCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT-PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC-CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 444555666666777766666543 77889988753 367789999999999999999999998753
No 184
>KOG0112|consensus
Probab=95.62 E-value=0.018 Score=56.74 Aligned_cols=67 Identities=21% Similarity=0.257 Sum_probs=57.3
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCccc
Q psy4086 54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIH 126 (305)
Q Consensus 54 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~ 126 (305)
.....+.+||++|..|+....|...|..||.|..|.+-... -||+|.|.+...++.|++.|-|..|.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq------~yayi~yes~~~aq~a~~~~rgap~G 517 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ------PYAYIQYESPPAAQAATHDMRGAPLG 517 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC------cceeeecccCccchhhHHHHhcCcCC
Confidence 34456789999999999999999999999999987765433 39999999999999999998876654
No 185
>KOG2068|consensus
Probab=95.62 E-value=0.015 Score=51.31 Aligned_cols=76 Identities=17% Similarity=0.235 Sum_probs=58.1
Q ss_pred CCCCeEEEcCCCCCCcHHHH---HHHHhccCCeeEEEEeeCCC--CCC-ccceEEEEecchhhHHHHHHHhccCccccee
Q psy4086 56 LSKTNLYIRGLTQDTTDKDL---INMCSQYGPIISTKAILDKT--TNK-CRGYGFVDFESGGYALAAVKALQDKGIHAQM 129 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~~L---~~~f~~~G~i~~~~i~~~~~--~g~-~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~ 129 (305)
+.+.-+||-+|+..+..+++ .+.|.+||.|..|.+.++.. .+. .-.-++|+|...++|..||...+|...+++.
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 44556899999988766655 34899999999999888762 111 1123899999999999999999988888776
Q ss_pred cc
Q psy4086 130 AR 131 (305)
Q Consensus 130 ~~ 131 (305)
++
T Consensus 155 lk 156 (327)
T KOG2068|consen 155 LK 156 (327)
T ss_pred hH
Confidence 44
No 186
>KOG1996|consensus
Probab=95.62 E-value=0.033 Score=48.11 Aligned_cols=60 Identities=18% Similarity=0.223 Sum_probs=48.0
Q ss_pred HHHHHHHHhccCCeeEEEEeeCCCCCCc-cceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 72 DKDLINMCSQYGPIISTKAILDKTTNKC-RGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 72 ~~~L~~~f~~~G~i~~~~i~~~~~~g~~-~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
++++++.+++||.|..|.|..++.--.. .---||+|...++|.+|+-.|||+-+.++..+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~ 360 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVS 360 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeee
Confidence 3567788899999999999887632211 12379999999999999999999999988764
No 187
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.55 E-value=0.014 Score=47.69 Aligned_cols=72 Identities=13% Similarity=0.111 Sum_probs=45.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhc-cCCe---eEEEEeeCCC-CCC-ccceEEEEecchhhHHHHHHHhccCcccc
Q psy4086 56 LSKTNLYIRGLTQDTTDKDLINMCSQ-YGPI---ISTKAILDKT-TNK-CRGYGFVDFESGGYALAAVKALQDKGIHA 127 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~~L~~~f~~-~G~i---~~~~i~~~~~-~g~-~~G~afV~f~~~~~A~~a~~~l~g~~i~~ 127 (305)
...++|.|++||+++||+++.+.++. ++.. ..+.-..... ... .-.-|||.|.+.+++......++|+.+..
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 34568999999999999999987776 6654 2232112221 111 22358999999999999999999976543
No 188
>KOG2135|consensus
Probab=95.16 E-value=0.06 Score=49.52 Aligned_cols=71 Identities=10% Similarity=0.203 Sum_probs=55.4
Q ss_pred ceEEecCCCCC-CHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEeccC
Q psy4086 139 NLYIANLPLNF-KECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADS 217 (305)
Q Consensus 139 ~l~V~nlp~~~-te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~~ 217 (305)
.|-+.-.+..+ +-++|..+|.+||+|..|.|-.. .--|.|+|.+..+|-+|.. .++..|++ +.|+|.|-++
T Consensus 374 ~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-----~~~a~vTF~t~aeag~a~~-s~~avlnn--r~iKl~whnp 445 (526)
T KOG2135|consen 374 PLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-----SLHAVVTFKTRAEAGEAYA-SHGAVLNN--RFIKLFWHNP 445 (526)
T ss_pred hhhhhccCCCCchHhhhhhhhhhcCccccccccCc-----hhhheeeeeccccccchhc-cccceecC--ceeEEEEecC
Confidence 34444445554 45789999999999999987644 3368999999999977764 68899999 7799999776
No 189
>KOG4574|consensus
Probab=95.00 E-value=0.02 Score=56.10 Aligned_cols=77 Identities=21% Similarity=0.288 Sum_probs=65.8
Q ss_pred ceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEeccCC
Q psy4086 139 NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSG 218 (305)
Q Consensus 139 ~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~~~ 218 (305)
+.++.|.+..++...|..+|+.||.|.+++.+++ -..|.|+|.+.+.|..|+++|+|+++-...-+.+|.||+.-
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~-----~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD-----LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccc-----ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 4566777778888999999999999999998876 44799999999999999999999988655578999999875
Q ss_pred Cc
Q psy4086 219 LK 220 (305)
Q Consensus 219 ~~ 220 (305)
.-
T Consensus 375 ~~ 376 (1007)
T KOG4574|consen 375 PM 376 (1007)
T ss_pred cc
Confidence 43
No 190
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=95.00 E-value=1.2 Score=38.76 Aligned_cols=149 Identities=13% Similarity=0.151 Sum_probs=95.6
Q ss_pred CCCCCCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCC-------CCCccceEEEEecchhhHHHHHHH----
Q psy4086 51 TGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKT-------TNKCRGYGFVDFESGGYALAAVKA---- 119 (305)
Q Consensus 51 ~~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~-------~g~~~G~afV~f~~~~~A~~a~~~---- 119 (305)
.+.|.-..|.|...|+..+++--++...|-+||+|+.|.++.+.. .-.......+.|-+.+.+......
T Consensus 8 kGdD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQr 87 (309)
T PF10567_consen 8 KGDDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQR 87 (309)
T ss_pred CCCccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHH
Confidence 455666778899999999999999999999999999999998761 112335688999998887665432
Q ss_pred -------hccCcccceecc----------------------------cccCCCCceEEecCCCCCCHHHHHHHH---hhC
Q psy4086 120 -------LQDKGIHAQMAR----------------------------QQEQDPTNLYIANLPLNFKECDLESLL---AKY 161 (305)
Q Consensus 120 -------l~g~~i~~~~~~----------------------------~~~~~~~~l~V~nlp~~~te~~l~~~F---~~~ 161 (305)
|+...+...+.. ......+.|.|.--....+++-+.+.+ ..-
T Consensus 88 LsEfK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~~~~~~~dl~~~kL~fL~~~ 167 (309)
T PF10567_consen 88 LSEFKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFKDPVDKDDLIEKKLPFLKNS 167 (309)
T ss_pred HHHHHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEecCccchhHHHHHhhhhhccC
Confidence 233333222221 111223556654332222333333332 111
Q ss_pred C----CeEEEEEeeCC---CCCcccEEEEEecCHHHHHHHHHHhC
Q psy4086 162 V----TVVSTRILRDN---NNTSKGVGFARLESKDKCDQMIQLFN 199 (305)
Q Consensus 162 g----~v~~v~i~~~~---~g~~~g~afV~f~~~~~A~~Ai~~l~ 199 (305)
+ .+++|.|+... ..-++.||.++|-+...|.+.++-|.
T Consensus 168 ~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 168 NNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred CCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 2 26777777654 34567899999999999999887665
No 191
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.77 E-value=0.034 Score=45.46 Aligned_cols=82 Identities=16% Similarity=0.204 Sum_probs=51.4
Q ss_pred CCCceEEecCCCCCCHHHHHHHHhh-CCCe---EEEEEeeCC--CC-CcccEEEEEecCHHHHHHHHHHhCCCCCCCC--
Q psy4086 136 DPTNLYIANLPLNFKECDLESLLAK-YVTV---VSTRILRDN--NN-TSKGVGFARLESKDKCDQMIQLFNGSTLPGS-- 206 (305)
Q Consensus 136 ~~~~l~V~nlp~~~te~~l~~~F~~-~g~v---~~v~i~~~~--~g-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~-- 206 (305)
...+|.|++||+++||+++.+.++. ++.- ..+.-.... .. ....-|+|.|.+.+++..-+..++|+.|.+.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4568999999999999999886665 4443 344322222 11 1223589999999999999999999876432
Q ss_pred -CccEEEEeccC
Q psy4086 207 -KEPLLVKFADS 217 (305)
Q Consensus 207 -~~~l~v~~a~~ 217 (305)
..+..|.+|--
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 24567888765
No 192
>KOG4676|consensus
Probab=94.76 E-value=0.035 Score=49.79 Aligned_cols=77 Identities=9% Similarity=0.220 Sum_probs=58.9
Q ss_pred CceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCC----CCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEE-
Q psy4086 138 TNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNN----NTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLV- 212 (305)
Q Consensus 138 ~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~----g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v- 212 (305)
..|-|.||..++|.++++.+|...|.|.++.|....+ ......|||.|.|...+..|-. |.++.|-+ +.|.|
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvd--raliv~ 84 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVD--RALIVR 84 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeee--eeEEEE
Confidence 4688999999999999999999999999999887442 2334589999999999988876 55565555 33444
Q ss_pred EeccC
Q psy4086 213 KFADS 217 (305)
Q Consensus 213 ~~a~~ 217 (305)
-|.+.
T Consensus 85 p~~~~ 89 (479)
T KOG4676|consen 85 PYGDE 89 (479)
T ss_pred ecCCC
Confidence 44443
No 193
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.67 E-value=0.22 Score=38.64 Aligned_cols=75 Identities=12% Similarity=0.208 Sum_probs=55.8
Q ss_pred ccCCCCceEEecCCCCCC-HHH---HHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCc
Q psy4086 133 QEQDPTNLYIANLPLNFK-ECD---LESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKE 208 (305)
Q Consensus 133 ~~~~~~~l~V~nlp~~~t-e~~---l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 208 (305)
.+..-.+|.|.=|..++. .+| +...++.||.|.+|.+. .+.-|.|.|.|..+|-+|+.+++. ...| .
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c------GrqsavVvF~d~~SAC~Av~Af~s-~~pg--t 152 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC------GRQSAVVVFKDITSACKAVSAFQS-RAPG--T 152 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec------CCceEEEEehhhHHHHHHHHhhcC-CCCC--c
Confidence 445567888887766653 344 44556889999999886 345799999999999999999875 6667 4
Q ss_pred cEEEEecc
Q psy4086 209 PLLVKFAD 216 (305)
Q Consensus 209 ~l~v~~a~ 216 (305)
.+...|..
T Consensus 153 m~qCsWqq 160 (166)
T PF15023_consen 153 MFQCSWQQ 160 (166)
T ss_pred eEEeeccc
Confidence 47777744
No 194
>KOG2591|consensus
Probab=94.54 E-value=0.11 Score=48.71 Aligned_cols=57 Identities=19% Similarity=0.217 Sum_probs=49.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHh--ccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHh
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCS--QYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKAL 120 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~--~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l 120 (305)
++|.|.|+.||.++-.|+++.||+ .|-++.+|..-.+.. =||+|+++.||+.|.+.|
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-------WyITfesd~DAQqAykyl 232 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-------WYITFESDTDAQQAYKYL 232 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-------eEEEeecchhHHHHHHHH
Confidence 678899999999999999999997 477888888776653 499999999999998764
No 195
>KOG2416|consensus
Probab=94.48 E-value=0.028 Score=53.02 Aligned_cols=64 Identities=19% Similarity=0.067 Sum_probs=51.2
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHh-ccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccc
Q psy4086 58 KTNLYIRGLTQDTTDKDLINMCS-QYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHA 127 (305)
Q Consensus 58 ~~~l~V~~Lp~~~t~~~L~~~f~-~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~ 127 (305)
...|+|.||=.-+|.-+|++|+. .+|.|++..|=+- |-.|||.|.+.++|.+.+.+|||..+..
T Consensus 444 SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI------KShCyV~yss~eEA~atr~AlhnV~WP~ 508 (718)
T KOG2416|consen 444 SNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI------KSHCYVSYSSVEEAAATREALHNVQWPP 508 (718)
T ss_pred cceEeeecccccchHHHHHHHHhhccCchHHHHHHHh------hcceeEecccHHHHHHHHHHHhccccCC
Confidence 45599999999999999999998 5566766633222 3379999999999999999999876543
No 196
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.48 E-value=0.13 Score=40.26 Aligned_cols=53 Identities=25% Similarity=0.424 Sum_probs=41.4
Q ss_pred HHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecccccC
Q psy4086 74 DLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQ 135 (305)
Q Consensus 74 ~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~~~~ 135 (305)
+|.+.|..||++.=++.+.+ .-+|+|.+-+.|.+|+. ++|..|.++.++.+.+
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LK 104 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLK 104 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE-
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeC
Confidence 56778889999887777654 47999999999999998 9999998887654333
No 197
>KOG2068|consensus
Probab=94.27 E-value=0.019 Score=50.65 Aligned_cols=79 Identities=15% Similarity=0.300 Sum_probs=59.8
Q ss_pred CceEEecCCCCCCHHHH---HHHHhhCCCeEEEEEeeCCC--CC--cccEEEEEecCHHHHHHHHHHhCCCCCCCCCccE
Q psy4086 138 TNLYIANLPLNFKECDL---ESLLAKYVTVVSTRILRDNN--NT--SKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPL 210 (305)
Q Consensus 138 ~~l~V~nlp~~~te~~l---~~~F~~~g~v~~v~i~~~~~--g~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l 210 (305)
..+||-+|+..+..+.+ .+.|.+||.|.+|.+..+.. .. ...-++|+|+..++|..||...+|..+++ +.|
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg--~~l 155 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDG--RAL 155 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhh--hhh
Confidence 45788888887765544 35688899999998888651 11 11238999999999999999999999998 557
Q ss_pred EEEeccCC
Q psy4086 211 LVKFADSG 218 (305)
Q Consensus 211 ~v~~a~~~ 218 (305)
+..+...+
T Consensus 156 ka~~gttk 163 (327)
T KOG2068|consen 156 KASLGTTK 163 (327)
T ss_pred HHhhCCCc
Confidence 77776654
No 198
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.20 E-value=0.17 Score=35.50 Aligned_cols=54 Identities=15% Similarity=0.421 Sum_probs=40.1
Q ss_pred ceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhC
Q psy4086 139 NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFN 199 (305)
Q Consensus 139 ~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 199 (305)
.+|--..|..+...||.++|+.||.|. |.++.|. -|||...+.+.|..|+..+.
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I~-VsWi~dT------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQIY-VSWINDT------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCEE-EEEECTT------EEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcEE-EEEEcCC------cEEEEeecHHHHHHHHHHhc
Confidence 344444999999999999999999775 5555442 69999999999999998875
No 199
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.05 E-value=0.13 Score=42.19 Aligned_cols=61 Identities=26% Similarity=0.330 Sum_probs=44.6
Q ss_pred CHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhC--CCCCCCCCccEEEEeccC
Q psy4086 150 KECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFN--GSTLPGSKEPLLVKFADS 217 (305)
Q Consensus 150 te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~--g~~~~g~~~~l~v~~a~~ 217 (305)
..+.|+++|..++.+....++. +-+-..|.|.+.++|.+|...|+ +..+.| ..|+|-|+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~-----sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g--~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK-----SFRRIRVVFESPESAQRARQLLHWDGTSFNG--KRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET-----TTTEEEEE-SSTTHHHHHHHTST--TSEETT--EE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcC-----CCCEEEEEeCCHHHHHHHHHHhcccccccCC--CceEEEEccc
Confidence 3478999999999988887774 33458999999999999999999 899999 5599999854
No 200
>KOG2318|consensus
Probab=94.04 E-value=0.22 Score=47.04 Aligned_cols=131 Identities=14% Similarity=0.142 Sum_probs=79.1
Q ss_pred CCCCeEEEcCCCCC-CcHHHHHHHHhcc----CCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceec
Q psy4086 56 LSKTNLYIRGLTQD-TTDKDLINMCSQY----GPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMA 130 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~-~t~~~L~~~f~~~----G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~ 130 (305)
..+++|-|-||.|. +...+|.-+|..| |.|.+|.|.... ||- . +.+-+..+|-.+..-..
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSe-------FGk-----e---RM~eEeV~GP~~el~~~ 236 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSE-------FGK-----E---RMKEEEVHGPPKELFKP 236 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhh-------hhH-----H---HhhhhcccCChhhhccc
Confidence 34566999999998 8899999999876 578888887543 221 1 11223344443322111
Q ss_pred ccccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccE
Q psy4086 131 RQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPL 210 (305)
Q Consensus 131 ~~~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l 210 (305)
........ ......++..++-+..|+ +... ...||.|+|.+.+.|.+..+.++|..+..+.-.|
T Consensus 237 ~e~~~~s~------sD~ee~~~~~~~kLR~Yq-~~rL---------kYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~ 300 (650)
T KOG2318|consen 237 VEEYKESE------SDDEEEEDVDREKLRQYQ-LNRL---------KYYYAVVECDSIETAKAVYEECDGIEFESSANKL 300 (650)
T ss_pred cccCcccc------cchhhhhhHHHHHHHHHH-hhhh---------eeEEEEEEecCchHHHHHHHhcCcceecccccee
Confidence 11111110 111111222344445553 2222 2348999999999999999999999998766667
Q ss_pred EEEeccC
Q psy4086 211 LVKFADS 217 (305)
Q Consensus 211 ~v~~a~~ 217 (305)
.++|-..
T Consensus 301 DLRFIPD 307 (650)
T KOG2318|consen 301 DLRFIPD 307 (650)
T ss_pred eeeecCC
Confidence 7777543
No 201
>KOG2253|consensus
Probab=94.01 E-value=0.016 Score=55.25 Aligned_cols=62 Identities=18% Similarity=0.230 Sum_probs=51.8
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccce
Q psy4086 58 KTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQ 128 (305)
Q Consensus 58 ~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~ 128 (305)
.-+|||+||...+.++-++.++..||-|-.++... |+|+.|.....+..|+..++-..+.+.
T Consensus 40 ~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~ 101 (668)
T KOG2253|consen 40 RDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQ 101 (668)
T ss_pred CceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcc
Confidence 34599999999999999999999999888776553 999999999999999988765444433
No 202
>KOG4285|consensus
Probab=93.88 E-value=0.14 Score=44.60 Aligned_cols=78 Identities=17% Similarity=0.141 Sum_probs=57.9
Q ss_pred CceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEeccC
Q psy4086 138 TNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADS 217 (305)
Q Consensus 138 ~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~~ 217 (305)
.-|.|-+++..-. .-|..+|++||+|++.... ..-.|-.|+|.++.+|++||. .||+.|++. ..|-|+.+.+
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~-----~ngNwMhirYssr~~A~KALs-kng~ii~g~-vmiGVkpCtD 269 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP-----SNGNWMHIRYSSRTHAQKALS-KNGTIIDGD-VMIGVKPCTD 269 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeeeecC-----CCCceEEEEecchhHHHHhhh-hcCeeeccc-eEEeeeecCC
Confidence 3455656666533 4567899999999876544 224589999999999999997 589999886 5677888777
Q ss_pred CCcCCC
Q psy4086 218 GLKKRG 223 (305)
Q Consensus 218 ~~~~~~ 223 (305)
+....+
T Consensus 270 ksvi~~ 275 (350)
T KOG4285|consen 270 KSVING 275 (350)
T ss_pred HHHhcc
Confidence 666553
No 203
>KOG0804|consensus
Probab=93.45 E-value=0.33 Score=44.58 Aligned_cols=67 Identities=19% Similarity=0.262 Sum_probs=56.9
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhccC-CeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCccc
Q psy4086 58 KTNLYIRGLTQDTTDKDLINMCSQYG-PIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIH 126 (305)
Q Consensus 58 ~~~l~V~~Lp~~~t~~~L~~~f~~~G-~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~ 126 (305)
.+.|+|-.+|-.+|-.||..|...+- .|.+++|++|... ++=-.+|+|.+.++|....+++||+.+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 67899999999999999999887664 5899999996532 3335889999999999999999999764
No 204
>KOG4285|consensus
Probab=93.00 E-value=0.33 Score=42.26 Aligned_cols=64 Identities=14% Similarity=0.209 Sum_probs=47.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccce
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQ 128 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~ 128 (305)
..+.|-|-++|+.-+. -|..+|++||.|++...-.+ | -+-.|.|.+.-+|++||. -||+.|.+.
T Consensus 196 ~D~WVTVfGFppg~~s-~vL~~F~~cG~Vvkhv~~~n---g---NwMhirYssr~~A~KALs-kng~ii~g~ 259 (350)
T KOG4285|consen 196 ADTWVTVFGFPPGQVS-IVLNLFSRCGEVVKHVTPSN---G---NWMHIRYSSRTHAQKALS-KNGTIIDGD 259 (350)
T ss_pred ccceEEEeccCccchh-HHHHHHHhhCeeeeeecCCC---C---ceEEEEecchhHHHHhhh-hcCeeeccc
Confidence 3677888888876554 45667999999987665422 2 289999999999999998 566666553
No 205
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=92.81 E-value=0.086 Score=37.62 Aligned_cols=56 Identities=20% Similarity=0.338 Sum_probs=39.8
Q ss_pred EEEEecchhhHHHHHHH------hccCcccceecc-----------cccCCCCceEEecCCCCCCHHHHHHHH
Q psy4086 103 GFVDFESGGYALAAVKA------LQDKGIHAQMAR-----------QQEQDPTNLYIANLPLNFKECDLESLL 158 (305)
Q Consensus 103 afV~f~~~~~A~~a~~~------l~g~~i~~~~~~-----------~~~~~~~~l~V~nlp~~~te~~l~~~F 158 (305)
|+|+|.++.-|++.++. +++..+.++..- ......++|-|.|||..+.+++|++..
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 68999999999998875 333333222111 233456889999999999999998754
No 206
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.44 E-value=0.29 Score=37.95 Aligned_cols=59 Identities=27% Similarity=0.284 Sum_probs=45.0
Q ss_pred CCCeEEEcCCCCCCc-HHHHHH---HHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhcc
Q psy4086 57 SKTNLYIRGLTQDTT-DKDLIN---MCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQD 122 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t-~~~L~~---~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g 122 (305)
.-.||.|.=|..++. .+||+. .++.||+|.+|.+.-. -.|.|.|.|..+|-+|+.++..
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr-------qsavVvF~d~~SAC~Av~Af~s 147 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR-------QSAVVVFKDITSACKAVSAFQS 147 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC-------ceEEEEehhhHHHHHHHHhhcC
Confidence 335688988777753 345544 5678999999987532 2699999999999999999874
No 207
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=92.05 E-value=0.59 Score=31.45 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCC
Q psy4086 148 NFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPG 205 (305)
Q Consensus 148 ~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 205 (305)
.++-++|+..+..|. .. +|..|+ .|| ||.|.+..+|+++....+|..+..
T Consensus 11 ~~~v~d~K~~Lr~y~-~~--~I~~d~----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~ 60 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WD--RIRDDR----TGF-YIVFNDSKEAERCFRAEDGTLFFT 60 (66)
T ss_pred CccHHHHHHHHhcCC-cc--eEEecC----CEE-EEEECChHHHHHHHHhcCCCEEEE
Confidence 467899999999996 33 344554 345 999999999999999999988766
No 208
>KOG0804|consensus
Probab=91.38 E-value=0.72 Score=42.49 Aligned_cols=68 Identities=22% Similarity=0.378 Sum_probs=57.7
Q ss_pred CCceEEecCCCCCCHHHHHHHHhhC-CCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCC
Q psy4086 137 PTNLYIANLPLNFKECDLESLLAKY-VTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPG 205 (305)
Q Consensus 137 ~~~l~V~nlp~~~te~~l~~~F~~~-g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 205 (305)
...|+|-.+|..++--||..+...+ -.|.+++|++|.. ..+-..+|.|.+.++|..-.+.+||+.|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~-pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM-PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC-CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 5678999999999999999998765 4488999999653 345678999999999999999999998854
No 209
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=91.03 E-value=1.4 Score=30.23 Aligned_cols=59 Identities=14% Similarity=0.302 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHhhCCC-----eEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEec
Q psy4086 147 LNFKECDLESLLAKYVT-----VVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFA 215 (305)
Q Consensus 147 ~~~te~~l~~~F~~~g~-----v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a 215 (305)
..++..+|..++...+. |-.++|..+ |+||+-.. +.|..+++.|++..+.| +.|+|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-------~S~vev~~-~~a~~v~~~l~~~~~~g--k~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN-------FSFVEVPE-EVAEKVLEALNGKKIKG--KKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS--------EEEEE-T-T-HHHHHHHHTT--SSS------EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee-------EEEEEECH-HHHHHHHHHhcCCCCCC--eeEEEEEC
Confidence 35788888888877655 446776643 89999765 47889999999999999 66888764
No 210
>KOG2253|consensus
Probab=90.76 E-value=0.18 Score=48.48 Aligned_cols=72 Identities=17% Similarity=0.141 Sum_probs=60.6
Q ss_pred ccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEE
Q psy4086 133 QEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLV 212 (305)
Q Consensus 133 ~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v 212 (305)
...+..++||+|+-..+..+-++.+...||.|.+++... |+|+.|..+..+.+|+..|+-..+++.+ |.+
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~--------fgf~~f~~~~~~~ra~r~~t~~~~~~~k--l~~ 105 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK--------FGFCEFLKHIGDLRASRLLTELNIDDQK--LIE 105 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh--------hcccchhhHHHHHHHHHHhcccCCCcch--hhc
Confidence 334567899999999999999999999999998876542 9999999999999999999988888854 554
Q ss_pred Ee
Q psy4086 213 KF 214 (305)
Q Consensus 213 ~~ 214 (305)
.-
T Consensus 106 ~~ 107 (668)
T KOG2253|consen 106 NV 107 (668)
T ss_pred cc
Confidence 44
No 211
>KOG2135|consensus
Probab=89.75 E-value=0.14 Score=47.22 Aligned_cols=70 Identities=19% Similarity=0.138 Sum_probs=51.8
Q ss_pred CCCCeEEEcCCCCCC-cHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHH----hccCcccceec
Q psy4086 56 LSKTNLYIRGLTQDT-TDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA----LQDKGIHAQMA 130 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~-t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~----l~g~~i~~~~~ 130 (305)
.+.+.|-+.-.|+.. |-++|...|.+||+|+.|.|-.... .|.|+|.+..+|-.|... ||++.|.+.|.
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~------~a~vTF~t~aeag~a~~s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL------HAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWH 443 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchh------hheeeeeccccccchhccccceecCceeEEEEe
Confidence 345556666677774 6688999999999999999866533 689999999999666552 56666665555
Q ss_pred c
Q psy4086 131 R 131 (305)
Q Consensus 131 ~ 131 (305)
.
T Consensus 444 n 444 (526)
T KOG2135|consen 444 N 444 (526)
T ss_pred c
Confidence 4
No 212
>KOG4574|consensus
Probab=87.56 E-value=1.3 Score=43.94 Aligned_cols=60 Identities=28% Similarity=0.419 Sum_probs=53.0
Q ss_pred EEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCccc
Q psy4086 61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIH 126 (305)
Q Consensus 61 l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~ 126 (305)
.++-|.+-..+..-|..+|.+||.|.+++..++-+ .|.|+|...+.|..|+.+|+|+++-
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs 360 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVS 360 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCccc
Confidence 55667777888899999999999999999988875 7999999999999999999998764
No 213
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=86.57 E-value=2.7 Score=28.30 Aligned_cols=50 Identities=18% Similarity=0.226 Sum_probs=39.3
Q ss_pred CCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccc
Q psy4086 69 DTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHA 127 (305)
Q Consensus 69 ~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~ 127 (305)
.++-++|+..+..|+- .+|..|+ | || ||.|.+..+|+++....||+.+..
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~-t----Gf-YIvF~~~~Ea~rC~~~~~~~~~f~ 60 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDR-T----GF-YIVFNDSKEAERCFRAEDGTLFFT 60 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecC-C----EE-EEEECChHHHHHHHHhcCCCEEEE
Confidence 4788999999999963 3344454 3 34 899999999999999999886643
No 214
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=85.98 E-value=1.8 Score=35.65 Aligned_cols=55 Identities=22% Similarity=0.176 Sum_probs=40.9
Q ss_pred cHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhc--cCcccceecc
Q psy4086 71 TDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQ--DKGIHAQMAR 131 (305)
Q Consensus 71 t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~--g~~i~~~~~~ 131 (305)
..+.|+++|..|+.+..+..++.- +-..|.|.+.++|.+|...|+ +..+.+..++
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~ 64 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLR 64 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-E
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceE
Confidence 347899999999998887777543 258999999999999999998 7777766543
No 215
>KOG2295|consensus
Probab=82.39 E-value=0.45 Score=44.83 Aligned_cols=77 Identities=13% Similarity=0.191 Sum_probs=59.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceeccc
Q psy4086 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQ 132 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~ 132 (305)
...|+||+.|++++++-.+|..+++.+-.+..+.+-....-.+...+..|.|.-.-...-|+.+||+..+.......
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~se 305 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFLSE 305 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccccc
Confidence 35678999999999999999999998876666665544433445567889999888888899999988776655543
No 216
>KOG4410|consensus
Probab=81.54 E-value=6 Score=34.42 Aligned_cols=53 Identities=21% Similarity=0.193 Sum_probs=37.6
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchh
Q psy4086 54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGG 111 (305)
Q Consensus 54 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~ 111 (305)
+....+-|+|+||+.++.-.||+..+.+-+- .-..|-. .-+.|-||+.|.+..
T Consensus 326 ~a~~~~di~~~nl~rd~rv~dlk~~lr~~~~-~pm~isw----kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 326 EAGAKTDIKLTNLSRDIRVKDLKSELRKREC-TPMSISW----KGHFGKCFLHFGNRK 378 (396)
T ss_pred cCccccceeeccCccccchHHHHHHHHhcCC-CceeEee----ecCCcceeEecCCcc
Confidence 3334566999999999999999999987653 2233322 225678999998743
No 217
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=79.47 E-value=4.1 Score=31.95 Aligned_cols=107 Identities=14% Similarity=0.014 Sum_probs=66.4
Q ss_pred EEEcCCC--CCCcHHHHHHHHhc-cCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHH----hccCcccceecccc
Q psy4086 61 LYIRGLT--QDTTDKDLINMCSQ-YGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA----LQDKGIHAQMARQQ 133 (305)
Q Consensus 61 l~V~~Lp--~~~t~~~L~~~f~~-~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~----l~g~~i~~~~~~~~ 133 (305)
..||.+- ...+-..|.+.+.+ ++....+.+..- ..++..++|.+++++.++++. +++..+..+...+.
T Consensus 18 ~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~ 92 (153)
T PF14111_consen 18 CLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPD 92 (153)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEecccccccccchhhhhhccc
Confidence 4455552 23556666665543 233223333322 235899999999999998875 45555554444422
Q ss_pred cCC--------CCceEEecCCCC-CCHHHHHHHHhhCCCeEEEEEeeC
Q psy4086 134 EQD--------PTNLYIANLPLN-FKECDLESLLAKYVTVVSTRILRD 172 (305)
Q Consensus 134 ~~~--------~~~l~V~nlp~~-~te~~l~~~F~~~g~v~~v~i~~~ 172 (305)
... ..-|-|-|||.. .+++-|+.+.+.+|.+.++.....
T Consensus 93 ~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 93 FNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred ccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 221 112456799987 577889999999999998876544
No 218
>KOG4483|consensus
Probab=76.22 E-value=8.4 Score=35.19 Aligned_cols=56 Identities=20% Similarity=0.174 Sum_probs=44.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCe-eEEEEeeCCCCCCccceEEEEecchhhHHHHHHH
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPI-ISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i-~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~ 119 (305)
-.+.|-|.++|.....+||...|+.|+.- -+|+++-|. .||-.|.+...|..|+..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 45668899999999999999999999852 234444443 799999999999999883
No 219
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=76.15 E-value=10 Score=34.73 Aligned_cols=40 Identities=13% Similarity=0.155 Sum_probs=32.8
Q ss_pred ccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEeccC
Q psy4086 178 KGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADS 217 (305)
Q Consensus 178 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~~ 217 (305)
..||.|++.+.+.+......++|..+...-..+.++|-..
T Consensus 258 yYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvPD 297 (622)
T COG5638 258 YYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVPD 297 (622)
T ss_pred eEEEEEEeccchhhHHHHhccCccccccccceeeeeecCC
Confidence 4489999999999999999999999887655677777443
No 220
>KOG4410|consensus
Probab=74.25 E-value=9.3 Score=33.30 Aligned_cols=47 Identities=23% Similarity=0.263 Sum_probs=35.6
Q ss_pred CceEEecCCCCCCHHHHHHHHhhCCCe-EEEEEeeCCCCCcccEEEEEecCHH
Q psy4086 138 TNLYIANLPLNFKECDLESLLAKYVTV-VSTRILRDNNNTSKGVGFARLESKD 189 (305)
Q Consensus 138 ~~l~V~nlp~~~te~~l~~~F~~~g~v-~~v~i~~~~~g~~~g~afV~f~~~~ 189 (305)
.-||++||+.++.-.||+..+.+-+.+ .++.+. -..+-||+.|.+..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk-----g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK-----GHFGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeee-----cCCcceeEecCCcc
Confidence 459999999999999999999877653 344333 34667999997643
No 221
>KOG2891|consensus
Probab=73.62 E-value=9.6 Score=33.06 Aligned_cols=36 Identities=17% Similarity=0.258 Sum_probs=29.0
Q ss_pred CCCceEEecCCCC------------CCHHHHHHHHhhCCCeEEEEEee
Q psy4086 136 DPTNLYIANLPLN------------FKECDLESLLAKYVTVVSTRILR 171 (305)
Q Consensus 136 ~~~~l~V~nlp~~------------~te~~l~~~F~~~g~v~~v~i~~ 171 (305)
.+.+||+.+||.. .+++.|+..|+.||.|..|.|+.
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 4578998888863 35678999999999999887754
No 222
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=73.45 E-value=15 Score=25.12 Aligned_cols=54 Identities=20% Similarity=0.281 Sum_probs=31.8
Q ss_pred CCcHHHHHHHHhccCC-----eeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 69 DTTDKDLINMCSQYGP-----IISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 69 ~~t~~~L~~~f~~~G~-----i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
.++..+|..++...+. |-.|+|..+ |+||+-... .|+.+++.|++..+.++.++
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ 70 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVR 70 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEE
Confidence 5888999998876643 456666533 889988765 67889999998888776543
No 223
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=66.86 E-value=9.7 Score=34.14 Aligned_cols=57 Identities=23% Similarity=0.299 Sum_probs=40.5
Q ss_pred EEEEecchhhHHHHHHHhccCcccceecccccCCCCceEEecCCCCCCHHHHHHHHhh
Q psy4086 103 GFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDLESLLAK 160 (305)
Q Consensus 103 afV~f~~~~~A~~a~~~l~g~~i~~~~~~~~~~~~~~l~V~nlp~~~te~~l~~~F~~ 160 (305)
|||+|++..+|..|++.+....- .++......+++-|+-.||..+..+..+|.++..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~-~~~~v~~APeP~DI~W~NL~~~~~~r~~R~~~~~ 57 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP-NSWRVSPAPEPDDIIWENLSISSKQRFLRRIIVN 57 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC-CCceEeeCCCcccccccccCCChHHHHHHHHHHH
Confidence 79999999999999997654433 2223344556677888899777777777766543
No 224
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=64.58 E-value=64 Score=32.09 Aligned_cols=61 Identities=8% Similarity=0.177 Sum_probs=44.3
Q ss_pred CCCHHHHHHHHhhCCCeE-----EEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEeccCC
Q psy4086 148 NFKECDLESLLAKYVTVV-----STRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSG 218 (305)
Q Consensus 148 ~~te~~l~~~F~~~g~v~-----~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~~~ 218 (305)
.++..+|-.++..-+.|. .|+|.. .|.||+... +.|...+..|++..+.| +.|.|+.+...
T Consensus 498 ~~~~~~~~~~i~~~~~~~~~~ig~i~i~~-------~~s~v~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 563 (629)
T PRK11634 498 GVEVRHIVGAIANEGDISSRYIGNIKLFA-------SHSTIELPK-GMPGEVLQHFTRTRILN--KPMNMQLLGDA 563 (629)
T ss_pred CCCHHHHHHHHHhhcCCChhhCCcEEEeC-------CceEEEcCh-hhHHHHHHHhccccccC--CceEEEECCCC
Confidence 567777777776655543 455553 388999764 55888899999999999 66999987543
No 225
>KOG4019|consensus
Probab=63.19 E-value=7.5 Score=31.57 Aligned_cols=75 Identities=13% Similarity=0.152 Sum_probs=51.0
Q ss_pred CceEEecCCCCCCH-----HHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEE
Q psy4086 138 TNLYIANLPLNFKE-----CDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLV 212 (305)
Q Consensus 138 ~~l~V~nlp~~~te-----~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v 212 (305)
.++.+-+++..+-. ...+.+|..|.+.....++ ++.+...|.|.+.+.|..|...++...|.+.. .++.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l-----rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~-~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL-----RSFRRVRINFSNPEAAADARIKLHSTSFNGKN-ELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH-----HhhceeEEeccChhHHHHHHHHhhhcccCCCc-eEEE
Confidence 44556666554321 2345556655554444444 34556789999999999999999999999952 5888
Q ss_pred EeccCC
Q psy4086 213 KFADSG 218 (305)
Q Consensus 213 ~~a~~~ 218 (305)
-|+...
T Consensus 85 yfaQ~~ 90 (193)
T KOG4019|consen 85 YFAQPG 90 (193)
T ss_pred EEccCC
Confidence 787763
No 226
>KOG2295|consensus
Probab=61.87 E-value=2.4 Score=40.21 Aligned_cols=70 Identities=13% Similarity=0.137 Sum_probs=54.4
Q ss_pred CCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCC
Q psy4086 137 PTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGS 206 (305)
Q Consensus 137 ~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 206 (305)
.|+||+.|++++++-.+|..++..+..+..+.+-.+. ......+..|+|+---....|+.+||+..+...
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 4679999999999999999999998777776554443 223345678999888888888888998877653
No 227
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=60.56 E-value=18 Score=27.34 Aligned_cols=40 Identities=18% Similarity=0.486 Sum_probs=25.5
Q ss_pred CcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhh
Q psy4086 70 TTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGY 112 (305)
Q Consensus 70 ~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~ 112 (305)
++.++|++.|..|..++ ++.+.++. -+.|++.|+|...-.
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWS 68 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChH
Confidence 35688999999998864 77777663 578999999987544
No 228
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=57.59 E-value=6 Score=28.27 Aligned_cols=26 Identities=15% Similarity=0.323 Sum_probs=22.0
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHh
Q psy4086 55 QLSKTNLYIRGLTQDTTDKDLINMCS 80 (305)
Q Consensus 55 ~~~~~~l~V~~Lp~~~t~~~L~~~f~ 80 (305)
..++++|-|.|||...++++|++.++
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeEE
Confidence 44678899999999999999998654
No 229
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=57.40 E-value=53 Score=23.20 Aligned_cols=58 Identities=9% Similarity=0.107 Sum_probs=41.1
Q ss_pred ceEEecCCCCCCHHHHHHHHhhC-C-CeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHh
Q psy4086 139 NLYIANLPLNFKECDLESLLAKY-V-TVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLF 198 (305)
Q Consensus 139 ~l~V~nlp~~~te~~l~~~F~~~-g-~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 198 (305)
+-|+-..+...+..+|++.++.. + .|.+|+.+.-..+ .--|+|++..-.+|.+....|
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~--~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKG--EKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC--cEEEEEEeCCCCcHHHHHHhh
Confidence 34555678889999999999874 3 3677776665432 235999999988888775543
No 230
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=57.38 E-value=60 Score=22.96 Aligned_cols=57 Identities=9% Similarity=0.095 Sum_probs=41.8
Q ss_pred EEEcCCCCCCcHHHHHHHHhc-cC-CeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHh
Q psy4086 61 LYIRGLTQDTTDKDLINMCSQ-YG-PIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKAL 120 (305)
Q Consensus 61 l~V~~Lp~~~t~~~L~~~f~~-~G-~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l 120 (305)
-|+-..+.+++..+|++.++. || +|.+|..+.-+. ..-=|||.+...++|......|
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHHhh
Confidence 555567889999999999986 55 577777666542 2224999999999988775544
No 231
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=57.19 E-value=63 Score=22.42 Aligned_cols=57 Identities=9% Similarity=0.097 Sum_probs=41.3
Q ss_pred EEEcCCCCCCcHHHHHHHHhc-cC-CeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHh
Q psy4086 61 LYIRGLTQDTTDKDLINMCSQ-YG-PIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKAL 120 (305)
Q Consensus 61 l~V~~Lp~~~t~~~L~~~f~~-~G-~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l 120 (305)
-|+-.++.+++..+|++.++. |+ +|.+|..+.-+. ..-=|||.+...+.|...-..|
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHHhh
Confidence 566668889999999999886 55 567777665542 2224999999988887765543
No 232
>KOG2236|consensus
Probab=56.90 E-value=1.3e+02 Score=28.28 Aligned_cols=182 Identities=15% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecccccCCCCceEEecCCCCCCHHHH
Q psy4086 75 LINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDL 154 (305)
Q Consensus 75 L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~~~~~~~~l~V~nlp~~~te~~l 154 (305)
|=.+|+-||. +.++ |-.|.|.+.+++..-.-.+. .++|+ .|..+.+...
T Consensus 247 lG~I~EiFGp------V~~P-------~YvvRFnS~~e~~~~gi~ig----------------~~vy~--ap~~tq~I~~ 295 (483)
T KOG2236|consen 247 LGQIFEIFGP------VKNP-------YYVVRFNSEEEISFLGICIG----------------EKVYY--APDFTQEIFT 295 (483)
T ss_pred chhhhhhhcc------cCCc-------eEEEecCchhhhhhhccccC----------------CeeEe--cCcchhhhcc
Q ss_pred HHHHhhCCC----eEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEeccC-------------
Q psy4086 155 ESLLAKYVT----VVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADS------------- 217 (305)
Q Consensus 155 ~~~F~~~g~----v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~~------------- 217 (305)
..++..-|. .-..++... .++|.+.+.-..|.+.-. -+++.-+++++..
T Consensus 296 ~klkq~kGsDASn~~DeE~p~~---------e~dfSDDEkEaeak~~kK-----Qrk~r~~~k~~~nd~~~~~~~~~~ea 361 (483)
T KOG2236|consen 296 EKLKQGKGSDASNRYDEEIPPR---------EQDFSDDEKEAEAKQMKK-----QRKRRSKVKFSDNDPVKVKTEVEGEA 361 (483)
T ss_pred hhhhhcccccccccccccCChh---------hhccchHHHHHHHHHHHH-----HhhcccccccccCCCCcccccccccc
Q ss_pred -------CCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCC-CCCCCeeeeecCCCCCCCCCccCCCCCC-----
Q psy4086 218 -------GLKKRGAGAGGPNIYRGPGAEVRLWGRDSADSQLAYEHP-MTPIPATIQYQRFTAGPGGTGHIPAGYT----- 284 (305)
Q Consensus 218 -------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~p~-~~~~g~~~~~~~~~~~~~g~~~~p~~~~----- 284 (305)
...+..+++....++...+. +.++-.+...++.+.|. ....+...+|+-|..+.-.+-+.+.+++
T Consensus 362 n~~Ssn~p~~~~y~~r~~~~gf~rp~s--~~~q~pP~~~q~~~~p~~~~~s~p~pq~qNyppp~p~f~m~~~hP~~~~p~ 439 (483)
T KOG2236|consen 362 NRTSSNQPAPQMYRGRDQNRGFKRPRS--NHGQKPPQSAQNSFHPSSSDNSGPSPQQQNYPPPSPSFPMFQPHPPESNPP 439 (483)
T ss_pred ccccccCCcccccCCcccccCCCCccc--ccCCCCCcccccccCccccCCCCCCcccCCCCCCCCCCCccCCCCCCCCCc
Q ss_pred ---CCCCCcCccCCCCCCcccc
Q psy4086 285 ---PWVPTQYVMPAPHMSQVEV 303 (305)
Q Consensus 285 ---~~~p~~~~~~~p~~~~~~~ 303 (305)
.|.-+.+.|+|.-+.+.++
T Consensus 440 ~~~g~~~P~~~mpp~~P~~~~p 461 (483)
T KOG2236|consen 440 ANFGQANPFNQMPPAYPHQQSP 461 (483)
T ss_pred ccccccCccccCCCCCccccCC
No 233
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=56.15 E-value=30 Score=22.85 Aligned_cols=20 Identities=0% Similarity=0.137 Sum_probs=15.9
Q ss_pred HHHHHHHhhCCCeEEEEEee
Q psy4086 152 CDLESLLAKYVTVVSTRILR 171 (305)
Q Consensus 152 ~~l~~~F~~~g~v~~v~i~~ 171 (305)
++||++|+..|.|.-+.+-.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 58999999999987665443
No 234
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=55.93 E-value=54 Score=22.74 Aligned_cols=58 Identities=10% Similarity=0.120 Sum_probs=40.9
Q ss_pred ceEEecCCCCCCHHHHHHHHhhC-C-CeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHh
Q psy4086 139 NLYIANLPLNFKECDLESLLAKY-V-TVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLF 198 (305)
Q Consensus 139 ~l~V~nlp~~~te~~l~~~F~~~-g-~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 198 (305)
+-|+-.++...+..+|+..++.. + .|.+|+.+.-+.+ .--|||++..-+.|...-..+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~--~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRG--EKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC--ceEEEEEECCCCcHHHHHHhh
Confidence 45666688899999999998874 3 3667766655432 235999998888877765443
No 235
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=52.13 E-value=21 Score=31.92 Aligned_cols=34 Identities=18% Similarity=0.164 Sum_probs=25.0
Q ss_pred EEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEeccCC
Q psy4086 181 GFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSG 218 (305)
Q Consensus 181 afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~~~ 218 (305)
|||+|++..+|..|++.+....-. .+++..|-.+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~~----~~~v~~APeP 34 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRPN----SWRVSPAPEP 34 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCCC----CceEeeCCCc
Confidence 799999999999999976554432 2566666543
No 236
>KOG4483|consensus
Probab=51.30 E-value=63 Score=29.79 Aligned_cols=55 Identities=24% Similarity=0.346 Sum_probs=43.7
Q ss_pred CCceEEecCCCCCCHHHHHHHHhhCCC-eEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHH
Q psy4086 137 PTNLYIANLPLNFKECDLESLLAKYVT-VVSTRILRDNNNTSKGVGFARLESKDKCDQMIQL 197 (305)
Q Consensus 137 ~~~l~V~nlp~~~te~~l~~~F~~~g~-v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 197 (305)
...|=|-++|..+..+||...|+.|+. =-+|+++.| -.||-.|.+...|..||-.
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec------ceeEEeecchHHHHHHhhc
Confidence 466788899999999999999999865 245555544 2799999999999999864
No 237
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=49.94 E-value=32 Score=30.30 Aligned_cols=80 Identities=15% Similarity=0.277 Sum_probs=57.6
Q ss_pred CCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC--------CCCcccEEEEEecCHHHHHHH----HHHhCC--CC
Q psy4086 137 PTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN--------NNTSKGVGFARLESKDKCDQM----IQLFNG--ST 202 (305)
Q Consensus 137 ~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~--------~g~~~g~afV~f~~~~~A~~A----i~~l~g--~~ 202 (305)
.+.|-..|+..+++--.+...|.+||.|++|.++.+. +........+.|-+.+.+..- ++.|.. +.
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 4667788999889888889999999999999999875 123345678999988876542 333432 34
Q ss_pred CCCCCccEEEEeccCC
Q psy4086 203 LPGSKEPLLVKFADSG 218 (305)
Q Consensus 203 ~~g~~~~l~v~~a~~~ 218 (305)
+.- ..|.|.|..-+
T Consensus 95 L~S--~~L~lsFV~l~ 108 (309)
T PF10567_consen 95 LKS--ESLTLSFVSLN 108 (309)
T ss_pred cCC--cceeEEEEEEe
Confidence 444 45888887643
No 238
>PF04415 DUF515: Protein of unknown function (DUF515) ; InterPro: IPR007509 This is a family of hypothetical archaeal proteins.
Probab=45.57 E-value=33 Score=31.85 Aligned_cols=15 Identities=13% Similarity=0.246 Sum_probs=13.1
Q ss_pred CCcHHHHHHHHhccC
Q psy4086 69 DTTDKDLINMCSQYG 83 (305)
Q Consensus 69 ~~t~~~L~~~f~~~G 83 (305)
.++++++.+.|+.||
T Consensus 353 kl~~~~v~~~l~~YG 367 (416)
T PF04415_consen 353 KLDYSQVKEQLGNYG 367 (416)
T ss_pred CcCHHHHHHHHHHhC
Confidence 457799999999999
No 239
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=43.67 E-value=10 Score=34.64 Aligned_cols=63 Identities=19% Similarity=0.203 Sum_probs=52.3
Q ss_pred CCCCeEEEcCCCCCCcHH--------HHHHHHhc--cCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHH
Q psy4086 56 LSKTNLYIRGLTQDTTDK--------DLINMCSQ--YGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVK 118 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~--------~L~~~f~~--~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~ 118 (305)
...+.+|+.++..+.+.+ ++...|.. .+.+..+...++.....++|.-|++|...+.++++..
T Consensus 172 ~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 172 QMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 345668999988886655 89999988 6788888888888777899999999999999988864
No 240
>PRK11901 hypothetical protein; Reviewed
Probab=43.60 E-value=2.5e+02 Score=25.34 Aligned_cols=58 Identities=17% Similarity=0.187 Sum_probs=38.0
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEE--EecchhhHHHHHHHhc
Q psy4086 59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFV--DFESGGYALAAVKALQ 121 (305)
Q Consensus 59 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV--~f~~~~~A~~a~~~l~ 121 (305)
-+|-|.. .-.++.|.+|.++++ +..+.+.+....|+.- |..| .|.+.++|..|++.|-
T Consensus 246 YTLQL~A---as~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLP 305 (327)
T PRK11901 246 YTLQLSS---ASRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLP 305 (327)
T ss_pred eEEEeec---CCCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCC
Confidence 3455544 356888998888875 4666666655444432 3322 3788999999998864
No 241
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=41.81 E-value=61 Score=24.43 Aligned_cols=45 Identities=11% Similarity=0.175 Sum_probs=26.1
Q ss_pred CCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHH-HHHHHH
Q psy4086 149 FKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKD-KCDQMI 195 (305)
Q Consensus 149 ~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~-~A~~Ai 195 (305)
++-++|++.|..|..+. ++.+.++. -..++++|+|...- --..|+
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~~-gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGKQ-GHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEETT-EEEEEEEEE--SSHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCCC-CCcEEEEEEECCChHHHHHHH
Confidence 35578999999997764 66666654 35789999997643 333444
No 242
>KOG4213|consensus
Probab=39.28 E-value=42 Score=27.31 Aligned_cols=59 Identities=19% Similarity=0.189 Sum_probs=39.4
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcc-CCeeEEEEeeCCCCC--CccceEEEEecchhhHHHHHHH
Q psy4086 55 QLSKTNLYIRGLTQDTTDKDLINMCSQY-GPIISTKAILDKTTN--KCRGYGFVDFESGGYALAAVKA 119 (305)
Q Consensus 55 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~-G~i~~~~i~~~~~~g--~~~G~afV~f~~~~~A~~a~~~ 119 (305)
....+++|.. .|++.|.++..-- |++..+.+.+.. .+ ..+|--||+|...+.|.++++.
T Consensus 108 ~~~~r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 108 GIKERTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred HHHHhhhhcc-----CCHHHHHHHHHHhcccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhh
Confidence 3455667766 5555555543311 677777765443 23 5789999999999999988775
No 243
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=38.96 E-value=24 Score=20.55 Aligned_cols=15 Identities=20% Similarity=0.346 Sum_probs=9.9
Q ss_pred CCcHHHHHHHHhccC
Q psy4086 69 DTTDKDLINMCSQYG 83 (305)
Q Consensus 69 ~~t~~~L~~~f~~~G 83 (305)
++++++|++.|.+..
T Consensus 20 Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 20 DTDEDQLKEVFNRIK 34 (36)
T ss_dssp ---HHHHHHHHHCS-
T ss_pred cCCHHHHHHHHHHhc
Confidence 688999999998764
No 244
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=38.08 E-value=89 Score=28.10 Aligned_cols=25 Identities=24% Similarity=0.533 Sum_probs=20.3
Q ss_pred CCCceEEecCCCCCCHHHHHHHHhh
Q psy4086 136 DPTNLYIANLPLNFKECDLESLLAK 160 (305)
Q Consensus 136 ~~~~l~V~nlp~~~te~~l~~~F~~ 160 (305)
.++-+.|||+|..+.|.-|.+.|+-
T Consensus 250 ~ptyvv~Gn~p~vlRESLL~~vfe~ 274 (361)
T COG1759 250 EPTYVVVGNIPVVLRESLLPKVFEM 274 (361)
T ss_pred CceEEEECCcchhhHHHHHHHHHHH
Confidence 4456778999999999988888863
No 245
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=36.18 E-value=1.4e+02 Score=20.16 Aligned_cols=59 Identities=20% Similarity=0.249 Sum_probs=37.0
Q ss_pred eEEEEecchhhHHHHHHHhccCcccceecc-ccc-CCCCceEEecCCCCCCHHHHHHHHhhCC
Q psy4086 102 YGFVDFESGGYALAAVKALQDKGIHAQMAR-QQE-QDPTNLYIANLPLNFKECDLESLLAKYV 162 (305)
Q Consensus 102 ~afV~f~~~~~A~~a~~~l~g~~i~~~~~~-~~~-~~~~~l~V~nlp~~~te~~l~~~F~~~g 162 (305)
+.+|.|.+..+|.+|-+.|....+..+.+- +.. ...|-+-+. ++. -+.+.+.++++..+
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~~liP~P~~i~~~CG~al~-~~~-~d~~~i~~~l~~~~ 63 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPVRLIPTPREISAGCGLALR-FEP-EDLEKIKEILEENG 63 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcEEEeCCChhccCCCCEEEE-ECh-hhHHHHHHHHHHCC
Confidence 689999999999999999987777666543 111 223333332 111 34456666666654
No 246
>KOG4008|consensus
Probab=36.06 E-value=53 Score=27.97 Aligned_cols=36 Identities=19% Similarity=0.305 Sum_probs=29.6
Q ss_pred ccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEE
Q psy4086 133 QEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTR 168 (305)
Q Consensus 133 ~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~ 168 (305)
......+||+-|+|...|++.|.++.+.+|.+..+.
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 344567899999999999999999999998665443
No 247
>PRK10905 cell division protein DamX; Validated
Probab=35.72 E-value=3.1e+02 Score=24.69 Aligned_cols=60 Identities=15% Similarity=0.070 Sum_probs=37.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEE--EEecchhhHHHHHHHhc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGF--VDFESGGYALAAVKALQ 121 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~af--V~f~~~~~A~~a~~~l~ 121 (305)
.+-+|-|+.+ .+++.|++|..+.| +....+......|+.. |-. =.|.+.++|++|++.|-
T Consensus 246 ~~YTLQL~A~---Ss~~~l~~fakKlg-L~~y~vy~TtRnGkpW-YVV~yG~YaSraeAk~AiakLP 307 (328)
T PRK10905 246 SHYTLQLSSS---SNYDNLNGWAKKEN-LKNYVVYETTRNGQPW-YVLVSGVYASKEEAKRAVSTLP 307 (328)
T ss_pred CceEEEEEec---CCHHHHHHHHHHcC-CCceEEEEeccCCceE-EEEEecCCCCHHHHHHHHHHCC
Confidence 4445666654 46688888888875 4444444443344322 322 24889999999999863
No 248
>PRK11901 hypothetical protein; Reviewed
Probab=34.93 E-value=1.1e+02 Score=27.48 Aligned_cols=59 Identities=10% Similarity=0.102 Sum_probs=37.8
Q ss_pred eEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEE--EecCHHHHHHHHHHhCC
Q psy4086 140 LYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFA--RLESKDKCDQMIQLFNG 200 (305)
Q Consensus 140 l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV--~f~~~~~A~~Ai~~l~g 200 (305)
-|.--|--.-.++.|+.+..+++ +..+.+.... +|+.- |..| .|.+.++|.+|+..|-.
T Consensus 245 ~YTLQL~Aas~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 245 HYTLQLSSASRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CeEEEeecCCCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCH
Confidence 33333444456788888887775 4556665554 44432 3333 57899999999998863
No 249
>KOG4008|consensus
Probab=34.66 E-value=36 Score=28.94 Aligned_cols=32 Identities=22% Similarity=0.305 Sum_probs=27.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhccCCeeE
Q psy4086 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIIS 87 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~ 87 (305)
..+.+||+-|+|..+|++-|..+.+.+|.+..
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~ 69 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQE 69 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhh
Confidence 34556999999999999999999999985543
No 250
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=34.39 E-value=38 Score=25.38 Aligned_cols=101 Identities=18% Similarity=0.242 Sum_probs=54.7
Q ss_pred CCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHH----HHHHhccCcccceecccccCCCCceE
Q psy4086 66 LTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALA----AVKALQDKGIHAQMARQQEQDPTNLY 141 (305)
Q Consensus 66 Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~----a~~~l~g~~i~~~~~~~~~~~~~~l~ 141 (305)
||+-+ +.|-++|+.=|+|.++.-+..--+ .+|.. .++..+|...- -.......++
T Consensus 11 lPPYT--nKLSDYfeSPGKI~svItvtqypd--------------ndal~~~~G~lE~vDg~i~I-----Gs~q~~~sV~ 69 (145)
T TIGR02542 11 LPPYT--NKLSDYFESPGKIQSVITVTQYPD--------------NDALLYVHGTLEQVDGNIRI-----GSGQTPASVR 69 (145)
T ss_pred cCCcc--chhhHHhcCCCceEEEEEEeccCC--------------chhhheeeeehhhccCcEEE-----ccCCCcccEE
Confidence 56554 468899999999998776543211 11111 22334444111 1111222233
Q ss_pred E---------ecCCCCCCHHHHHHHHhh---CCCeEEEEEeeCC--CCCcccEEEEEecCH
Q psy4086 142 I---------ANLPLNFKECDLESLLAK---YVTVVSTRILRDN--NNTSKGVGFARLESK 188 (305)
Q Consensus 142 V---------~nlp~~~te~~l~~~F~~---~g~v~~v~i~~~~--~g~~~g~afV~f~~~ 188 (305)
| .--|+.+|..+|+++|.+ |-.|+.-.+.+|- .| +-..||..|...
T Consensus 70 i~gTPsgnnv~F~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~G-sYRiCFrL~~~~ 129 (145)
T TIGR02542 70 IQGTPSGNNVIFPPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEG-SYRICFRLFNAT 129 (145)
T ss_pred EecCCCCCceecCceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCC-ceEEEEEEeccc
Confidence 2 224778999999999974 4445444444442 22 233688888654
No 251
>KOG2891|consensus
Probab=33.84 E-value=41 Score=29.33 Aligned_cols=34 Identities=12% Similarity=0.260 Sum_probs=27.0
Q ss_pred CeEEEcCCCCCC------------cHHHHHHHHhccCCeeEEEEee
Q psy4086 59 TNLYIRGLTQDT------------TDKDLINMCSQYGPIISTKAIL 92 (305)
Q Consensus 59 ~~l~V~~Lp~~~------------t~~~L~~~f~~~G~i~~~~i~~ 92 (305)
-||++.+||-.+ +++-|+..|+.||.|..|.|..
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 459999888542 5778999999999998887753
No 252
>KOG4213|consensus
Probab=33.06 E-value=1.2e+02 Score=24.73 Aligned_cols=55 Identities=15% Similarity=0.112 Sum_probs=38.5
Q ss_pred CceEEecCCCCCCHHHHHHHHhhC-CCeEEEEEeeCCCC--CcccEEEEEecCHHHHHHHHHH
Q psy4086 138 TNLYIANLPLNFKECDLESLLAKY-VTVVSTRILRDNNN--TSKGVGFARLESKDKCDQMIQL 197 (305)
Q Consensus 138 ~~l~V~nlp~~~te~~l~~~F~~~-g~v~~v~i~~~~~g--~~~g~afV~f~~~~~A~~Ai~~ 197 (305)
+++|.. .|+++|.++..-- |.+..+.+.+...+ ..+|-.||+|.+.+.|.+.++.
T Consensus 112 r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 112 RTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred hhhhcc-----CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 455554 5666666555433 57888777665544 5678899999999999988764
No 253
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=32.88 E-value=99 Score=21.96 Aligned_cols=48 Identities=10% Similarity=0.242 Sum_probs=31.0
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecc
Q psy4086 59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFES 109 (305)
Q Consensus 59 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~ 109 (305)
.-||||+++..+-|.-...+.+..++ -++.++....+ ..||+|-...+
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~-G~a~m~~~~~n--eqG~~~~t~G~ 73 (86)
T PF09707_consen 26 PGVYVGNVSARVRERLWERVTEWIGD-GSAVMVWSDNN--EQGFDFRTLGD 73 (86)
T ss_pred CCcEEcCCCHHHHHHHHHHHHhhCCC-ccEEEEEccCC--CCCEEEEEeCC
Confidence 34999999988877665555554443 33444444322 78999988743
No 254
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=32.17 E-value=66 Score=21.65 Aligned_cols=59 Identities=17% Similarity=0.267 Sum_probs=40.1
Q ss_pred HHHHHHHhccC-CeeEEEEeeCCCCCCccceEEEEecchhhHHHH--HHHhccCcccceecc
Q psy4086 73 KDLINMCSQYG-PIISTKAILDKTTNKCRGYGFVDFESGGYALAA--VKALQDKGIHAQMAR 131 (305)
Q Consensus 73 ~~L~~~f~~~G-~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a--~~~l~g~~i~~~~~~ 131 (305)
++|++-|...| +|.++.-+..+.++...---||+.....+...+ |+.|.+..|.+...+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIYKIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccceeehHhhCCeEEEEecCC
Confidence 56778888888 678888887776677777788888776543333 344666666655443
No 255
>smart00833 CobW_C Cobalamin synthesis protein cobW C-terminal domain. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis PUBMED:12869542. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents the C-terminal domain found in CobW, as well as in P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression PUBMED:7765511.
Probab=31.40 E-value=88 Score=21.75 Aligned_cols=24 Identities=8% Similarity=0.155 Sum_probs=16.6
Q ss_pred CCCCCcHHHHHHHHhcc-CCeeEEE
Q psy4086 66 LTQDTTDKDLINMCSQY-GPIISTK 89 (305)
Q Consensus 66 Lp~~~t~~~L~~~f~~~-G~i~~~~ 89 (305)
.+..++.+.|..+++.. +.|.++|
T Consensus 8 ~~~~~~~~~l~~~l~~l~~~i~R~K 32 (92)
T smart00833 8 ARRPFHPQRLLAALDELPEGVLRAK 32 (92)
T ss_pred cCCCCCHHHHHHHHHhccCCeEEEE
Confidence 45567888898888765 4555555
No 256
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=30.83 E-value=2e+02 Score=22.62 Aligned_cols=55 Identities=15% Similarity=0.188 Sum_probs=37.0
Q ss_pred ceEEecCCCCCCHHHHHHHHhh-CC-CeEEEEEeeCCCCCcccEEEEEecCHHHHHHHH
Q psy4086 139 NLYIANLPLNFKECDLESLLAK-YV-TVVSTRILRDNNNTSKGVGFARLESKDKCDQMI 195 (305)
Q Consensus 139 ~l~V~nlp~~~te~~l~~~F~~-~g-~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai 195 (305)
+-|+--++...+..+|++.++. |+ .|..|..+.-..|.- -|||++....+|....
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~K--KA~V~L~~~~~aidva 139 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLK--KAYIRLSPDVDALDVA 139 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCce--EEEEEECCCCcHHHHH
Confidence 4555567888999999999887 43 366666555444322 5899997776655443
No 257
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=30.70 E-value=1.1e+02 Score=20.13 Aligned_cols=54 Identities=15% Similarity=0.025 Sum_probs=29.6
Q ss_pred EEecchhhHHHHHHHhccCcccce-ecccccCCCCceEEecCCCCCCHHHHHHHH
Q psy4086 105 VDFESGGYALAAVKALQDKGIHAQ-MARQQEQDPTNLYIANLPLNFKECDLESLL 158 (305)
Q Consensus 105 V~f~~~~~A~~a~~~l~g~~i~~~-~~~~~~~~~~~l~V~nlp~~~te~~l~~~F 158 (305)
..|.+.+.|++.+..|....+... ...........|+||..+..-.-+.+...+
T Consensus 10 ~s~~~~~~A~~~~~~l~~~g~~~~~~~~~~~~~~yrV~~G~f~~~~~A~~~~~~l 64 (76)
T PF05036_consen 10 GSFSSEENAERLLAKLKKKGPDAYVVQVSKGGPWYRVRVGPFSSREEAEAALRKL 64 (76)
T ss_dssp EEES-HHHHHHHHHHHHHHT-----EEEEEETTCEEEEECCECTCCHHHHHHHHH
T ss_pred EEcCCHHHHHHHHHHHHhcCCCcceEEEecCCceEEEEECCCCCHHHHHHHHHHH
Confidence 458899999999988765544333 333444455667777655444433333333
No 258
>KOG1295|consensus
Probab=30.30 E-value=43 Score=30.61 Aligned_cols=69 Identities=12% Similarity=0.243 Sum_probs=46.9
Q ss_pred CCceEEecCCCCCCHHHHHHHHhhCCC-eEEEEEeeCCC---CCcccEEEEEecCHHHHHHHHHHhCCCCCCC
Q psy4086 137 PTNLYIANLPLNFKECDLESLLAKYVT-VVSTRILRDNN---NTSKGVGFARLESKDKCDQMIQLFNGSTLPG 205 (305)
Q Consensus 137 ~~~l~V~nlp~~~te~~l~~~F~~~g~-v~~v~i~~~~~---g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 205 (305)
.+++.|.+||..+++++|.+....+-. +....+..... ..-.+.|+|.|...++...-...++|+.+-.
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld 79 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLD 79 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEec
Confidence 456889999999999998888776533 22223332211 1225678999999999777777777776533
No 259
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=29.56 E-value=1.7e+02 Score=21.62 Aligned_cols=42 Identities=19% Similarity=0.337 Sum_probs=28.1
Q ss_pred HHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHH
Q psy4086 73 KDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAV 117 (305)
Q Consensus 73 ~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~ 117 (305)
.+|.++++++| |..-.|..|..+ +.=||++++.|.+..-+++
T Consensus 27 PE~~a~lk~ag-i~nYSIfLde~~--n~lFgy~E~~d~~a~m~~~ 68 (105)
T COG3254 27 PELLALLKEAG-IRNYSIFLDEEE--NLLFGYWEYEDFEADMAKM 68 (105)
T ss_pred HHHHHHHHHcC-CceeEEEecCCc--ccEEEEEEEcChHHHHHHH
Confidence 45778889998 566666666533 3459999999655544444
No 260
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=29.18 E-value=1.1e+02 Score=22.33 Aligned_cols=49 Identities=8% Similarity=0.146 Sum_probs=29.9
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecch
Q psy4086 59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESG 110 (305)
Q Consensus 59 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~ 110 (305)
.-||||+++..+-+.--..+-+.+++ -.+.++... + ...||+|-.+.+.
T Consensus 28 ~GVyVg~~S~rVRd~lW~~v~~~~~~-G~avmv~~~-~-~eqG~~~~t~G~~ 76 (97)
T PRK11558 28 AGVYVGDVSRRIREMIWQQVTQLAEE-GNVVMAWAT-N-TESGFEFQTFGEN 76 (97)
T ss_pred CCcEEcCCCHHHHHHHHHHHHHhCCC-CcEEEEEcC-C-CCCCcEEEecCCC
Confidence 34999999887766544444454543 334444422 2 3449999887664
No 261
>PRK02302 hypothetical protein; Provisional
Probab=29.05 E-value=1.6e+02 Score=21.04 Aligned_cols=62 Identities=15% Similarity=0.217 Sum_probs=37.9
Q ss_pred HHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecccccCCCCceEEecCCCC
Q psy4086 78 MCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLN 148 (305)
Q Consensus 78 ~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~~~~~~~~l~V~nlp~~ 148 (305)
-+.+||.|..+.= + ..| .|-|.|.++++..++.|....+--+........-.+=|++||...
T Consensus 22 ~LrkfG~I~Y~Sk---k-----~kY-vvlYvn~~~~e~~~~kl~~l~fVk~Ve~S~~~~l~~~f~~~l~r~ 83 (89)
T PRK02302 22 KLSKYGDIVYHSK---R-----SRY-LVLYVNKEDVEQKLEELSKLKFVKKVRPSAIDEIDQNFVGNLYRD 83 (89)
T ss_pred HHhhcCcEEEEec---c-----ccE-EEEEECHHHHHHHHHHHhcCCCeeEEcccCchhccchhhhhhhcc
Confidence 3568998865431 1 114 466889999999999987655443333333333455566776653
No 262
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=27.77 E-value=1.6e+02 Score=28.27 Aligned_cols=50 Identities=16% Similarity=0.080 Sum_probs=37.0
Q ss_pred HHHHHHHHh----hCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCC
Q psy4086 151 ECDLESLLA----KYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNG 200 (305)
Q Consensus 151 e~~l~~~F~----~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 200 (305)
.-+|..+|. .+|.|+++.+...+.-..+...++.|.+.++|.+|+..+..
T Consensus 203 g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~ 256 (499)
T PRK11230 203 GFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDIIA 256 (499)
T ss_pred ccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHHh
Confidence 346777765 57889998877766334456778999999999999887643
No 263
>KOG1295|consensus
Probab=27.71 E-value=66 Score=29.42 Aligned_cols=69 Identities=10% Similarity=0.123 Sum_probs=45.9
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhccCC-eeEEEEeeCCCC--CCccceEEEEecchhhHHHHHHHhccCccc
Q psy4086 58 KTNLYIRGLTQDTTDKDLINMCSQYGP-IISTKAILDKTT--NKCRGYGFVDFESGGYALAAVKALQDKGIH 126 (305)
Q Consensus 58 ~~~l~V~~Lp~~~t~~~L~~~f~~~G~-i~~~~i~~~~~~--g~~~G~afV~f~~~~~A~~a~~~l~g~~i~ 126 (305)
.+.|.|.+||+..++.+|.+-+..+-. +........... ..-.+.|+|.|...++.......++|..+.
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 456999999999999999887766543 222222211111 112457899999999988777777776543
No 264
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=27.05 E-value=21 Score=32.23 Aligned_cols=48 Identities=17% Similarity=0.257 Sum_probs=37.6
Q ss_pred HHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCC
Q psy4086 151 ECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGS 201 (305)
Q Consensus 151 e~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 201 (305)
...|.+.+.+.|.|..-.+.+- -+-|.+||-.-..++++++++.|++.
T Consensus 275 ~p~iF~~i~~~G~v~~~EM~rt---FNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 275 PPPIFKWLQKAGNVEREEMYRT---FNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CcHHHHHHHHhcCCCHHHHHHH---hcCccceEEEEcHHHHHHHHHHHHhc
Confidence 4567788888888776554443 45778999999999999999999865
No 265
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=26.87 E-value=62 Score=28.55 Aligned_cols=14 Identities=29% Similarity=0.503 Sum_probs=8.0
Q ss_pred cCccCCCCCCcccc
Q psy4086 290 QYVMPAPHMSQVEV 303 (305)
Q Consensus 290 ~~~~~~p~~~~~~~ 303 (305)
-.|||-|.|+|+.|
T Consensus 401 fpm~plp~mpp~~~ 414 (427)
T COG5222 401 FPMMPLPQMPPMMM 414 (427)
T ss_pred CCCCCCCCCCccee
Confidence 34566666666654
No 266
>CHL00030 rpl23 ribosomal protein L23
Probab=26.18 E-value=1.9e+02 Score=20.88 Aligned_cols=34 Identities=12% Similarity=0.222 Sum_probs=25.4
Q ss_pred EEEcCCCCCCcHHHHHHHHhc-cC-CeeEEEEeeCC
Q psy4086 61 LYIRGLTQDTTDKDLINMCSQ-YG-PIISTKAILDK 94 (305)
Q Consensus 61 l~V~~Lp~~~t~~~L~~~f~~-~G-~i~~~~i~~~~ 94 (305)
-|+-.++.+++..+|++.++. |+ .|..|..+.-+
T Consensus 21 ~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~~ 56 (93)
T CHL00030 21 QYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLP 56 (93)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEcC
Confidence 566667889999999999986 55 46666665544
No 267
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=25.96 E-value=3.1e+02 Score=21.15 Aligned_cols=100 Identities=19% Similarity=0.206 Sum_probs=42.8
Q ss_pred EEEcCCC----CCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHH---HHHH----hccCccccee
Q psy4086 61 LYIRGLT----QDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALA---AVKA----LQDKGIHAQM 129 (305)
Q Consensus 61 l~V~~Lp----~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~---a~~~----l~g~~i~~~~ 129 (305)
++++++. ..+.-.+|+++|+..| ..+|+-. -++| - |.|.+..+... .|+. --|..+.+-.
T Consensus 6 aLLRGINVGG~nki~MaeLr~~l~~~G-f~~V~Ty--i~SG----N--vvf~~~~~~~~l~~~ie~~l~~~fG~~v~v~v 76 (137)
T PF08002_consen 6 ALLRGINVGGKNKIKMAELREALEDLG-FTNVRTY--IQSG----N--VVFESDRDPAELAAKIEKALEERFGFDVPVIV 76 (137)
T ss_dssp EEESS-SBTTBS---HHHHHHHHHHCT--EEEEEE--TTTT----E--EEEEESS-HHHHHHHHHHHHHHH-TT---EEE
T ss_pred EEEcceecCCCCcccHHHHHHHHHHcC-CCCceEE--EeeC----C--EEEecCCChHHHHHHHHHHHHHhcCCCeEEEE
Confidence 5566652 3478899999999998 3555532 2233 2 44443333222 2222 2244333221
Q ss_pred cc-------------c--ccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEE
Q psy4086 130 AR-------------Q--QEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRI 169 (305)
Q Consensus 130 ~~-------------~--~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i 169 (305)
.. . ...+...++|--|....+.+.+.++-..-+..+.+.+
T Consensus 77 rs~~el~~i~~~nPf~~~~~~~~~~~~v~fl~~~~~~~~~~~l~~~~~~~E~~~~ 131 (137)
T PF08002_consen 77 RSAEELRAIIAANPFPWEAEADPKRLYVTFLSGPPDAEALEELAAYDTGPERFRV 131 (137)
T ss_dssp EEHHHHHHHHTT--GGGGS----SEEEEEEE-TT--HHHHHHHHTS---SEEEEE
T ss_pred eeHHHHHHHHHHCCCcccccCCcceEEEEEeCCCCCHHHHHHHhccCCCCcEEEE
Confidence 11 1 1235667777777777777766666654444455444
No 268
>KOG1251|consensus
Probab=25.17 E-value=48 Score=28.71 Aligned_cols=92 Identities=13% Similarity=0.034 Sum_probs=50.0
Q ss_pred HHHHhccCCeeEEEEeeCCCCCCccc----------eEEEEecchhhHHHHHHH-hccCcccceecccccCCCCceEEec
Q psy4086 76 INMCSQYGPIISTKAILDKTTNKCRG----------YGFVDFESGGYALAAVKA-LQDKGIHAQMARQQEQDPTNLYIAN 144 (305)
Q Consensus 76 ~~~f~~~G~i~~~~i~~~~~~g~~~G----------~afV~f~~~~~A~~a~~~-l~g~~i~~~~~~~~~~~~~~l~V~n 144 (305)
.++|++.|+|+.+.+.-.- .|.-.| -+-|.-..++.|+++.+. +.|+.+.....+.-...-++-.+|+
T Consensus 165 ~ElleqVg~iDalfvpvgG-GGllSgvAlaa~~l~P~i~vy~veP~~a~d~~qsf~~g~I~~l~tp~TIADG~r~~~lG~ 243 (323)
T KOG1251|consen 165 LELLEQVGEIDALFVPVGG-GGLLSGVALAAKSLKPSIEVYAVEPEAADDGQQSFLKGKIVHLDTPKTIADGVRTSHLGP 243 (323)
T ss_pred HHHHHhhCccceEEEeecC-cchhhHHHHHHhccCCCcEEEEecCcccchHHHHHhcCCeEecCCchhhhhhhhhccccc
Confidence 6788999999888876543 232222 233555666667776665 4555544332221112223333555
Q ss_pred CCC-----------CCCHHHHHHHHhhCCCeEEEE
Q psy4086 145 LPL-----------NFKECDLESLLAKYVTVVSTR 168 (305)
Q Consensus 145 lp~-----------~~te~~l~~~F~~~g~v~~v~ 168 (305)
+-+ .++|++|++...-+-+..++.
T Consensus 244 ~t~pIir~~vddi~Tv~e~Ei~~~lk~~~ermK~~ 278 (323)
T KOG1251|consen 244 LTWPIIRDLVDDILTVSEDEIKEALKLIWERMKVV 278 (323)
T ss_pred cchHHHHHHhhhheeecHHHHHHHHHHHHHHHhee
Confidence 443 357788887776554444333
No 269
>KOG2318|consensus
Probab=24.61 E-value=90 Score=30.26 Aligned_cols=42 Identities=19% Similarity=0.331 Sum_probs=33.6
Q ss_pred cCCCCceEEecCCCC-CCHHHHHHHHhhC----CCeEEEEEeeCCCC
Q psy4086 134 EQDPTNLYIANLPLN-FKECDLESLLAKY----VTVVSTRILRDNNN 175 (305)
Q Consensus 134 ~~~~~~l~V~nlp~~-~te~~l~~~F~~~----g~v~~v~i~~~~~g 175 (305)
...+++|-|-||.|. +..++|.-+|+.| |.|.+|.|....-|
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFG 217 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFG 217 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhh
Confidence 345678999999995 7889999999876 57999998876544
No 270
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=24.53 E-value=1e+02 Score=26.87 Aligned_cols=33 Identities=9% Similarity=0.027 Sum_probs=25.3
Q ss_pred eEEEcCCCCCCcHHHHHHHHhccCCeeEEEEee
Q psy4086 60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAIL 92 (305)
Q Consensus 60 ~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~ 92 (305)
...|+|||++++..-|..+++..-.+....++.
T Consensus 97 ~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~ 129 (259)
T COG0030 97 YKVVANLPYNISSPILFKLLEEKFIIQDMVLMV 129 (259)
T ss_pred CEEEEcCCCcccHHHHHHHHhccCccceEEEEe
Confidence 478999999999999999998665554444443
No 271
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=24.06 E-value=2e+02 Score=23.99 Aligned_cols=55 Identities=24% Similarity=0.284 Sum_probs=36.2
Q ss_pred CCcHHHHHH---HHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcc
Q psy4086 69 DTTDKDLIN---MCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGI 125 (305)
Q Consensus 69 ~~t~~~L~~---~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i 125 (305)
++++++|++ ...+|| | ...+++|..++..+-.-|+.=.|.+.+..|++.+....+
T Consensus 38 ~i~~~~lk~F~k~AkKyG-V-~yav~kdk~~~~~~~~V~FkA~Da~~i~~af~~~~~~~~ 95 (204)
T PF12687_consen 38 EITDEDLKEFKKEAKKYG-V-DYAVKKDKSTGPGKYDVFFKAKDADVINRAFKEFSAKKL 95 (204)
T ss_pred ecCHhhHHHHHHHHHHcC-C-ceEEeeccCCCCCcEEEEEEcCcHHHHHHHHHHHHHHhh
Confidence 456666655 446788 3 345577776655555666666788888888887765543
No 272
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=23.82 E-value=2.2e+02 Score=19.07 Aligned_cols=59 Identities=10% Similarity=0.197 Sum_probs=38.2
Q ss_pred CCCcHHHHHHHHhccCC---eeEEEEeeCCCCCCccceEEEEecc-hhhHHHHHHHhccCcccce
Q psy4086 68 QDTTDKDLINMCSQYGP---IISTKAILDKTTNKCRGYGFVDFES-GGYALAAVKALQDKGIHAQ 128 (305)
Q Consensus 68 ~~~t~~~L~~~f~~~G~---i~~~~i~~~~~~g~~~G~afV~f~~-~~~A~~a~~~l~g~~i~~~ 128 (305)
..+++..|.++...||- |....|-. -.+..-|.-+|++.- .++.++|++.|..+.+..+
T Consensus 12 ~~~~~piis~l~~~~~v~~nIl~g~i~~--i~~~~~G~l~l~l~g~~~~~~~a~~~L~~~~v~vE 74 (76)
T PF09383_consen 12 NSAQEPIISQLIREFGVDVNILHGNIEE--IQGTPFGILILELPGDDEEIEKAIAYLREQGVEVE 74 (76)
T ss_dssp CSSSSCHHHHHHHHHT-EEEEEEEEEEE--ETTEEEEEEEEEEES-HHHHHHHHHHHHHTTEEEE
T ss_pred CCcCchHHHHHHHHhCCCEEEEEEEeEE--cCCeeEEEEEEEEECCHHHHHHHHHHHHHCCCeEE
Confidence 45777788888888873 22222222 135678888899954 4556888888876665543
No 273
>KOG4019|consensus
Probab=23.67 E-value=44 Score=27.31 Aligned_cols=64 Identities=11% Similarity=0.115 Sum_probs=42.7
Q ss_pred CeEEEcCCCCCCc-HHH----HHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccce
Q psy4086 59 TNLYIRGLTQDTT-DKD----LINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQ 128 (305)
Q Consensus 59 ~~l~V~~Lp~~~t-~~~----L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~ 128 (305)
+++.+.+|+.++- +.+ ..++|..|-+.....+++ +.+.--|.|.+++.|..|.-.+++..+.++
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~ 79 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGK 79 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCC
Confidence 4578888877742 222 344566555544444433 344667889999999999998888877766
No 274
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=23.57 E-value=76 Score=22.23 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=20.4
Q ss_pred ccceEEEEecchhhHHHHHHHhcc
Q psy4086 99 CRGYGFVDFESGGYALAAVKALQD 122 (305)
Q Consensus 99 ~~G~afV~f~~~~~A~~a~~~l~g 122 (305)
.+||-|||=.+++++..|++.+.+
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TT
T ss_pred CceEEEEEeCCHHHHHHHHhcccc
Confidence 689999999999999999887543
No 275
>PF14893 PNMA: PNMA
Probab=23.47 E-value=93 Score=28.20 Aligned_cols=75 Identities=16% Similarity=0.277 Sum_probs=42.2
Q ss_pred CceEEecCCCCCCHHHHHHHHhh-CCCeEEEEEeeCC--CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q psy4086 138 TNLYIANLPLNFKECDLESLLAK-YVTVVSTRILRDN--NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKF 214 (305)
Q Consensus 138 ~~l~V~nlp~~~te~~l~~~F~~-~g~v~~v~i~~~~--~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~ 214 (305)
+.|.|.+||.++++++|++.+.. .-.+-..++.... .......|+|+|...-+-.. -=..|.|..-+-+|-|
T Consensus 19 r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~~n~~~-----iP~~i~g~gg~W~Vv~ 93 (331)
T PF14893_consen 19 RALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAEDVNYSL-----IPREIPGKGGPWRVVF 93 (331)
T ss_pred hhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccccchhh-----CchhcCCCCCceEEEe
Confidence 56889999999999999888754 2122233332221 11224478999875332111 1234555444566666
Q ss_pred ccC
Q psy4086 215 ADS 217 (305)
Q Consensus 215 a~~ 217 (305)
...
T Consensus 94 ~p~ 96 (331)
T PF14893_consen 94 KPP 96 (331)
T ss_pred cCC
Confidence 544
No 276
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=23.09 E-value=83 Score=22.41 Aligned_cols=48 Identities=15% Similarity=0.323 Sum_probs=27.1
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhc-cCCeeEEEEeeCCCCCCccceEEEEecc
Q psy4086 59 TNLYIRGLTQDTTDKDLINMCSQ-YGPIISTKAILDKTTNKCRGYGFVDFES 109 (305)
Q Consensus 59 ~~l~V~~Lp~~~t~~~L~~~f~~-~G~i~~~~i~~~~~~g~~~G~afV~f~~ 109 (305)
.-||||+++..+-|.--..+-+. .++ -.+.++.. +....||.|-.+.+
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~~-G~avm~~~--~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 26 AGVYVGGVSASVRERIWDYLAQHCPPK-GSLVITWS--SNTCPGFEFFTLGE 74 (87)
T ss_pred CCcEEcCCCHHHHHHHHHHHHHhCCCC-ccEEEEEe--CCCCCCcEEEecCC
Confidence 34999999877765433333333 222 22333333 23356899887765
No 277
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.78 E-value=3.9e+02 Score=21.16 Aligned_cols=54 Identities=24% Similarity=0.318 Sum_probs=38.9
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhcc---CCeeEEEEeeCCCC---------CCccc-eEEEEecchhh
Q psy4086 59 TNLYIRGLTQDTTDKDLINMCSQY---GPIISTKAILDKTT---------NKCRG-YGFVDFESGGY 112 (305)
Q Consensus 59 ~~l~V~~Lp~~~t~~~L~~~f~~~---G~i~~~~i~~~~~~---------g~~~G-~afV~f~~~~~ 112 (305)
..|++..+...+++++.++..++= +++.+|.+-+.+++ ...+. |-+|.|.+-..
T Consensus 88 ~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~ 154 (161)
T COG5353 88 GKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKE 154 (161)
T ss_pred CeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchh
Confidence 569999999999999999988754 46677766655432 12344 77888887654
No 278
>COG5180 PBP1 Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=22.64 E-value=1.5e+02 Score=28.11 Aligned_cols=8 Identities=25% Similarity=0.189 Sum_probs=3.1
Q ss_pred CCCccCCC
Q psy4086 274 GGTGHIPA 281 (305)
Q Consensus 274 ~g~~~~p~ 281 (305)
.|.+.+|+
T Consensus 599 ~GA~~~PG 606 (654)
T COG5180 599 MGAFGYPG 606 (654)
T ss_pred CccccCCC
Confidence 33333443
No 279
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=22.60 E-value=28 Score=23.42 Aligned_cols=20 Identities=10% Similarity=0.194 Sum_probs=16.6
Q ss_pred EEEEEecCHHHHHHHHHHhC
Q psy4086 180 VGFARLESKDKCDQMIQLFN 199 (305)
Q Consensus 180 ~afV~f~~~~~A~~Ai~~l~ 199 (305)
.+|..|.+.++|..++.++.
T Consensus 46 ~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 46 KAFSPFKSAEEALENANAIS 65 (67)
T ss_pred hhccCCCCHHHHHHHHHHhh
Confidence 48999999999988887654
No 280
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=22.43 E-value=2.9e+02 Score=22.88 Aligned_cols=62 Identities=8% Similarity=0.066 Sum_probs=36.2
Q ss_pred CHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhC-CCCCCCCCccEEEEe
Q psy4086 150 KECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFN-GSTLPGSKEPLLVKF 214 (305)
Q Consensus 150 te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~-g~~~~g~~~~l~v~~ 214 (305)
+.++.+++...++.-. +-|..| |...|-+.+...+.++|.+|++.+- ...+......+.|+-
T Consensus 25 ~~~~A~~~l~~~~~p~-~ViKad--Gla~GKGV~i~~~~~eA~~~l~~~~~~~~fg~~~~~vvIEE 87 (194)
T PF01071_consen 25 DYEEALEYLEEQGYPY-VVIKAD--GLAAGKGVVIADDREEALEALREIFVDRKFGDAGSKVVIEE 87 (194)
T ss_dssp SHHHHHHHHHHHSSSE-EEEEES--SSCTTTSEEEESSHHHHHHHHHHHHTSSTTCCCGSSEEEEE
T ss_pred CHHHHHHHHHhcCCCc-eEEccC--CCCCCCEEEEeCCHHHHHHHHHHhccccccCCCCCcEEEEe
Confidence 5667777777665433 233333 3444445666799999999998764 344543223454443
No 281
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=22.25 E-value=1.3e+02 Score=27.83 Aligned_cols=42 Identities=12% Similarity=0.225 Sum_probs=31.3
Q ss_pred cCCCCceEEecCCCC-CCHHHHHHHHhhC----CCeEEEEEeeCCCC
Q psy4086 134 EQDPTNLYIANLPLN-FKECDLESLLAKY----VTVVSTRILRDNNN 175 (305)
Q Consensus 134 ~~~~~~l~V~nlp~~-~te~~l~~~F~~~----g~v~~v~i~~~~~g 175 (305)
.....+|-|-||.|+ +...+|..+|+.| |.|..|.|....-|
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefG 189 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFG 189 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhh
Confidence 344577999999995 7788999999866 56788887655433
No 282
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=22.18 E-value=1.8e+02 Score=21.00 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=28.7
Q ss_pred eEEEcCCCCCCcHHHHHH---HHhccCCeeEEEE--eeCCCCCCccceEEEEec
Q psy4086 60 NLYIRGLTQDTTDKDLIN---MCSQYGPIISTKA--ILDKTTNKCRGYGFVDFE 108 (305)
Q Consensus 60 ~l~V~~Lp~~~t~~~L~~---~f~~~G~i~~~~i--~~~~~~g~~~G~afV~f~ 108 (305)
..|+.+||..+.+.++.. .|..+..-.+|.+ ......+.+.|++.+-+.
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~a 65 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLVA 65 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEEE
Confidence 368999999999887654 5555543233332 122345567777766554
No 283
>PRK10905 cell division protein DamX; Validated
Probab=21.89 E-value=2.4e+02 Score=25.36 Aligned_cols=54 Identities=11% Similarity=0.047 Sum_probs=33.6
Q ss_pred cCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEE--EEEecCHHHHHHHHHHhC
Q psy4086 144 NLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVG--FARLESKDKCDQMIQLFN 199 (305)
Q Consensus 144 nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~a--fV~f~~~~~A~~Ai~~l~ 199 (305)
-|--.-+++.|+++-.+.+ +....+.... +|+.. |- +=.|.+.++|.+|+..|-
T Consensus 251 QL~A~Ss~~~l~~fakKlg-L~~y~vy~TtRnGkpW-YVV~yG~YaSraeAk~AiakLP 307 (328)
T PRK10905 251 QLSSSSNYDNLNGWAKKEN-LKNYVVYETTRNGQPW-YVLVSGVYASKEEAKRAVSTLP 307 (328)
T ss_pred EEEecCCHHHHHHHHHHcC-CCceEEEEeccCCceE-EEEEecCCCCHHHHHHHHHHCC
Confidence 3334456788888888875 3433333332 45432 22 225789999999999885
No 284
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=21.65 E-value=1.6e+02 Score=23.18 Aligned_cols=54 Identities=20% Similarity=0.246 Sum_probs=36.6
Q ss_pred eeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecccccCCCCceEEecCCCCCCHHHHHHHHhhC
Q psy4086 85 IISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDLESLLAKY 161 (305)
Q Consensus 85 i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~~~~~~~~l~V~nlp~~~te~~l~~~F~~~ 161 (305)
|.++.+... .+||-||+....+++..+++.+.+.. -|+++ .++++++..++...
T Consensus 36 i~~i~vp~~-----fpGYVfVe~~~~~~~~~~i~~v~~v~---------------g~lg~---~l~~~Ei~~il~~~ 89 (153)
T PRK08559 36 IYAILAPPE-----LKGYVLVEAESKGAVEEAIRGIPHVR---------------GVVPG---EISFEEVEHFLKPK 89 (153)
T ss_pred EEEEEccCC-----CCcEEEEEEEChHHHHHHHhcCCCEe---------------eeCCC---CCCHHHHHHHHhcc
Confidence 555555433 68999999998888888887654321 12332 38888988888654
No 285
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=21.31 E-value=4.3e+02 Score=21.09 Aligned_cols=122 Identities=12% Similarity=0.030 Sum_probs=62.7
Q ss_pred HhccC-CeeEEEEeeCCCCCCccce-EEEEecchhhHHHHHHHh--ccCcccceecccccCCCCceEEecCCCCCCHHHH
Q psy4086 79 CSQYG-PIISTKAILDKTTNKCRGY-GFVDFESGGYALAAVKAL--QDKGIHAQMARQQEQDPTNLYIANLPLNFKECDL 154 (305)
Q Consensus 79 f~~~G-~i~~~~i~~~~~~g~~~G~-afV~f~~~~~A~~a~~~l--~g~~i~~~~~~~~~~~~~~l~V~nlp~~~te~~l 154 (305)
+++|| .|..+.--+++..|..... --++..+++.+.+.++.+ +|..|..---+........+.||++-..=-.+.|
T Consensus 26 ls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d~~~~~~~i~~~~e~~Gi~I~~~dg~~~~~~~~vvLIGhiv~tdiqDTI 105 (170)
T COG2061 26 LSKTGANIITIIHSRDKKYGPRVPVQIVFEGDREDKDAKIIRLLEEEGIIIIRFDGARLREKTDVVLIGHIVHTDIQDTI 105 (170)
T ss_pred hhhcCccEEEEEeecCcccCCceeEEEEEEecccHHHHHHHHHHHhCCcEEEEecCcCcceeEeEEEEEeeecCcHHHHH
Confidence 35666 4666666666654322222 222333355555555554 3332221111222333456788877554333333
Q ss_pred HHHHhhCC--CeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCC
Q psy4086 155 ESLLAKYV--TVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGS 201 (305)
Q Consensus 155 ~~~F~~~g--~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 201 (305)
..+ ...| .|.++.+.... ++.+...--+...+.+.-++|++.|+..
T Consensus 106 d~I-n~ig~A~vvDl~L~Mp~~e~~SsA~iti~a~~~e~l~ea~~~l~ev 154 (170)
T COG2061 106 DRI-NSIGGAEVVDLSLSMPGIEGESSARITIIAVGKEKLDEALRRLKEV 154 (170)
T ss_pred HHh-hccCCEEEEEEEeecCCCCCCcceeEEEEEcChhHHHHHHHHHHHH
Confidence 333 3333 56666665543 6666533344456788889999887643
No 286
>PF12091 DUF3567: Protein of unknown function (DUF3567); InterPro: IPR021951 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.
Probab=20.82 E-value=1.1e+02 Score=21.72 Aligned_cols=54 Identities=17% Similarity=0.207 Sum_probs=32.1
Q ss_pred eEEEEecchhhHHHHHHHhccCcccceecccccCCCCceEEecCC-------------CCCCHHHHHHHHhhCCC
Q psy4086 102 YGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLP-------------LNFKECDLESLLAKYVT 163 (305)
Q Consensus 102 ~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~~~~~~~~l~V~nlp-------------~~~te~~l~~~F~~~g~ 163 (305)
||.|+|.-.++. .++. -.|.+|-.+.+ .+.|||.+.- ..-|++++.+++..|..
T Consensus 10 y~VV~~~~~~~~-~~l~-~gGyEIVDK~~------~rEifi~G~~Ae~Fr~~V~~li~~~Pt~EevDdfL~~y~~ 76 (85)
T PF12091_consen 10 YCVVEFPPDAGH-PALA-RGGYEIVDKNA------RREIFIDGSWAEMFREDVQALIASEPTQEEVDDFLGGYDA 76 (85)
T ss_pred eEEEEecCCCCc-cchh-cCCcEEeecCC------CceEEeCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 999999543333 2222 46777665544 3567775431 24566777777777643
No 287
>PHA03326 nuclear egress membrane protein; Provisional
Probab=20.81 E-value=4.3e+02 Score=22.89 Aligned_cols=111 Identities=11% Similarity=0.089 Sum_probs=63.8
Q ss_pred cHHHHHHHHhccCCeeEEEEeeCCCCCC-ccceEEEEecchhhHHHHHHHhccCcccceecccccCCCCceEEecCCCCC
Q psy4086 71 TDKDLINMCSQYGPIISTKAILDKTTNK-CRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNF 149 (305)
Q Consensus 71 t~~~L~~~f~~~G~i~~~~i~~~~~~g~-~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~~~~~~~~l~V~nlp~~~ 149 (305)
.-|.|..+++.--.-+-|.|+++ ||. -.=.|||.+...-.-...+.++| +.=-|-.--+
T Consensus 54 ~vEYLLS~WE~~T~~~pcFvFKN--TG~aVSL~Cyv~~Pvkl~s~~~VrefN------------------vL~VNEsLiV 113 (275)
T PHA03326 54 SLEYLLSYWESRTKQEPCFVFKN--TGCAVSLSCYVHAPVKLESLRRVREFN------------------VLRVNESLIV 113 (275)
T ss_pred eHHHHHHHHHHhhcCCceEEEec--CCceEEEEEEecCchhhccccceeeeE------------------EEEecceEEE
Confidence 34556666664444455677765 442 22357787765544333333222 1111222234
Q ss_pred CHHHHHHHH-hhCCCeEEEEEeeCCCCCcccEEEEEec--CHHHHHHHHHHhCCC
Q psy4086 150 KECDLESLL-AKYVTVVSTRILRDNNNTSKGVGFARLE--SKDKCDQMIQLFNGS 201 (305)
Q Consensus 150 te~~l~~~F-~~~g~v~~v~i~~~~~g~~~g~afV~f~--~~~~A~~Ai~~l~g~ 201 (305)
+-+||.++= +.+|.+++|.|.+..+|..-..-||.|. ++.+-+.-++++.-+
T Consensus 114 ~l~DIe~IKPs~~GVLTkCVVRrs~~gsayniElVAFGPenE~EY~~LLReiy~K 168 (275)
T PHA03326 114 TLKDIEAIKPSAYGVLTKCVVRRSNSGSAYNIELVAFGPENESEYIALLREIYAK 168 (275)
T ss_pred EhhHhhhcCCcccceeeeEEEEecCCCceEEEEEEEECCCCHHHHHHHHHHHHHh
Confidence 667776665 5789999999988877766667789994 455555556555433
No 288
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=20.74 E-value=46 Score=30.62 Aligned_cols=59 Identities=17% Similarity=0.153 Sum_probs=46.9
Q ss_pred CCceEEecCCCCCCH--------HHHHHHHhh--CCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHH
Q psy4086 137 PTNLYIANLPLNFKE--------CDLESLLAK--YVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMI 195 (305)
Q Consensus 137 ~~~l~V~nlp~~~te--------~~l~~~F~~--~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai 195 (305)
.+.+|+.+.....+. +++...|.. .+.+..+...++. +...+|-.|++|...+.++++.
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 356777777665444 489999988 6778888888887 6678888999999999999987
No 289
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=20.71 E-value=4.6e+02 Score=24.90 Aligned_cols=95 Identities=13% Similarity=0.156 Sum_probs=52.6
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhc---cCCeeEEEEeeCCCCCCccceEEEE-ecchhhHHHHHHHhc-cCcccceeccc
Q psy4086 58 KTNLYIRGLTQDTTDKDLINMCSQ---YGPIISTKAILDKTTNKCRGYGFVD-FESGGYALAAVKALQ-DKGIHAQMARQ 132 (305)
Q Consensus 58 ~~~l~V~~Lp~~~t~~~L~~~f~~---~G~i~~~~i~~~~~~g~~~G~afV~-f~~~~~A~~a~~~l~-g~~i~~~~~~~ 132 (305)
+++|.|..||+.++.+++.+.+.. -+++..+.=++|..+. .|..||. +.....++..+..|- -..+.....
T Consensus 225 ~~~i~ItElP~~~~~~~~~e~i~~l~~~~k~~~I~~~~D~s~~--~~vrivI~lk~~~~~~~~~~~L~k~t~L~~s~~-- 300 (445)
T cd00187 225 RNTIEITELPYQVNKAKLKEKIAELVKDKKIEGISDVRDESDR--EGIRFVIELKRGAMAEVVLNGLYKVTKLQTTFG-- 300 (445)
T ss_pred CceEEEEeCCCcccHHHHHHHHHHHHhcCCCcccceeeeccCC--CceEEEEEECCCccHHHHHHHHHHhcCCceeee--
Confidence 367999999999999888776542 2334444445555332 2566654 555555554444432 222222221
Q ss_pred ccCCCCceEE-ecCCCCCCHHHHHHHHh
Q psy4086 133 QEQDPTNLYI-ANLPLNFKECDLESLLA 159 (305)
Q Consensus 133 ~~~~~~~l~V-~nlp~~~te~~l~~~F~ 159 (305)
..-.+++ .+-|..++-.+|.+.|-
T Consensus 301 ---~Nm~~~~~~g~p~~~~l~~iL~~f~ 325 (445)
T cd00187 301 ---INMVAFDPNGRPKKLNLKEILQEFL 325 (445)
T ss_pred ---eeEEEEecCCeeEEeCHHHHHHHHH
Confidence 1234555 55666666666555553
No 290
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=20.55 E-value=1.8e+02 Score=20.48 Aligned_cols=26 Identities=15% Similarity=0.256 Sum_probs=21.2
Q ss_pred CeeEEEEeeCCCCCCccceEEEEecc
Q psy4086 84 PIISTKAILDKTTNKCRGYGFVDFES 109 (305)
Q Consensus 84 ~i~~~~i~~~~~~g~~~G~afV~f~~ 109 (305)
+|.+++|..-...++-+|||=|+|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 46788888777669999999999976
No 291
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=20.44 E-value=2.4e+02 Score=17.80 Aligned_cols=54 Identities=13% Similarity=0.093 Sum_probs=38.9
Q ss_pred ceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCH----HHHHHHHHH
Q psy4086 139 NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESK----DKCDQMIQL 197 (305)
Q Consensus 139 ~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~----~~A~~Ai~~ 197 (305)
++.|.|+.-.--...+++.+...-.|.++.+-.. .+-+-|.|... ++..++|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~-----~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE-----TKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT-----TTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC-----CCEEEEEEecCCCCHHHHHHHHHH
Confidence 3566677666667889999999888998888754 45688888654 555566654
Done!