Query psy4086
Match_columns 305
No_of_seqs 304 out of 3160
Neff 9.2
Searched_HMMs 29240
Date Sat Aug 17 00:56:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4086.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4086hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 7.4E-38 2.5E-42 264.4 17.3 161 58-221 15-184 (213)
2 1fxl_A Paraneoplastic encephal 100.0 3.5E-36 1.2E-40 243.6 21.8 158 58-215 2-167 (167)
3 1b7f_A Protein (SXL-lethal pro 100.0 4.9E-36 1.7E-40 243.2 20.5 159 57-215 2-168 (168)
4 1l3k_A Heterogeneous nuclear r 100.0 4E-36 1.4E-40 249.9 19.2 165 55-223 10-188 (196)
5 3nmr_A Cugbp ELAV-like family 100.0 9.2E-36 3.2E-40 243.1 19.9 160 57-216 2-175 (175)
6 2qfj_A FBP-interacting repress 100.0 1.8E-35 6.2E-40 249.7 21.4 163 57-221 27-208 (216)
7 2cjk_A Nuclear polyadenylated 100.0 2.4E-36 8.1E-41 245.0 14.3 159 57-218 2-166 (167)
8 3md3_A Nuclear and cytoplasmic 100.0 1.6E-35 5.5E-40 239.5 18.5 156 59-217 1-166 (166)
9 3tyt_A Heterogeneous nuclear r 100.0 6.6E-33 2.3E-37 232.4 17.2 153 57-215 3-204 (205)
10 3smz_A Protein raver-1, ribonu 100.0 1E-32 3.4E-37 242.8 19.2 162 58-221 95-267 (284)
11 2g4b_A Splicing factor U2AF 65 100.0 1.6E-32 5.3E-37 223.5 17.1 151 57-216 3-172 (172)
12 1fje_B Nucleolin RBD12, protei 100.0 1.5E-33 5.1E-38 230.4 9.8 156 55-218 10-174 (175)
13 2yh0_A Splicing factor U2AF 65 100.0 3.7E-32 1.3E-36 226.3 16.7 154 58-220 4-196 (198)
14 3sde_A Paraspeckle component 1 100.0 1.7E-31 5.7E-36 232.3 19.4 162 55-222 19-183 (261)
15 2adc_A Polypyrimidine tract-bi 100.0 2.4E-31 8.2E-36 226.9 20.0 152 56-218 32-228 (229)
16 3pgw_A U1-A; protein-RNA compl 100.0 1.8E-31 6.1E-36 234.6 19.5 153 55-216 6-281 (282)
17 2ghp_A U4/U6 snRNA-associated 100.0 8.7E-32 3E-36 237.7 16.8 163 54-221 37-200 (292)
18 3smz_A Protein raver-1, ribonu 100.0 5.6E-31 1.9E-35 231.6 19.4 155 57-220 21-177 (284)
19 1qm9_A Polypyrimidine tract-bi 100.0 2.6E-31 9E-36 221.5 16.2 151 57-218 2-197 (198)
20 2ghp_A U4/U6 snRNA-associated 100.0 3.6E-31 1.2E-35 233.8 16.4 158 57-218 116-291 (292)
21 2kn4_A Immunoglobulin G-bindin 99.9 5.4E-25 1.8E-29 176.8 14.5 132 87-222 2-154 (158)
22 4f25_A Polyadenylate-binding p 99.9 9.4E-23 3.2E-27 154.9 9.1 94 58-153 5-113 (115)
23 2i2y_A Fusion protein consists 99.9 4.3E-22 1.5E-26 158.4 12.1 116 97-219 10-149 (150)
24 4fxv_A ELAV-like protein 1; RN 99.9 1.8E-21 6.1E-26 143.7 10.5 80 136-217 18-98 (99)
25 2lea_A Serine/arginine-rich sp 99.9 1.3E-21 4.5E-26 152.7 8.7 119 102-222 6-131 (135)
26 3pgw_S U1-70K; protein-RNA com 99.8 2.1E-21 7E-26 179.8 9.8 145 75-221 9-185 (437)
27 2dnz_A Probable RNA-binding pr 99.8 4.5E-20 1.6E-24 135.0 13.1 86 135-222 3-89 (95)
28 2fy1_A RNA-binding motif prote 99.8 4.6E-20 1.6E-24 140.2 13.4 87 134-222 4-90 (116)
29 4fxv_A ELAV-like protein 1; RN 99.8 1.4E-20 4.9E-25 138.8 10.2 76 57-132 18-93 (99)
30 3s8s_A Histone-lysine N-methyl 99.8 1.2E-20 4.2E-25 141.8 9.3 85 135-221 4-89 (110)
31 1x5u_A Splicing factor 3B subu 99.8 6E-20 2E-24 136.9 12.1 88 134-223 12-100 (105)
32 1x5s_A Cold-inducible RNA-bind 99.8 5.9E-20 2E-24 136.2 11.6 87 134-222 9-96 (102)
33 2dgs_A DAZ-associated protein 99.8 9.8E-20 3.3E-24 134.3 12.7 86 134-222 7-93 (99)
34 1u6f_A Tcubp1, RNA-binding pro 99.8 6.7E-20 2.3E-24 143.7 11.7 88 133-222 38-126 (139)
35 1whw_A Hypothetical protein ri 99.8 9.9E-20 3.4E-24 134.2 11.9 86 135-222 6-92 (99)
36 1h2v_Z 20 kDa nuclear CAP bind 99.8 6.3E-20 2.1E-24 146.8 11.2 87 135-223 37-124 (156)
37 3q2s_C Cleavage and polyadenyl 99.8 4.6E-21 1.6E-25 162.8 4.8 81 136-218 67-150 (229)
38 2lxi_A RNA-binding protein 10; 99.8 1.1E-20 3.8E-25 137.2 5.9 83 137-221 1-86 (91)
39 2d9p_A Polyadenylate-binding p 99.8 1.2E-19 4.3E-24 134.7 11.8 87 134-223 12-98 (103)
40 2dgp_A Bruno-like 4, RNA bindi 99.8 1.1E-19 3.6E-24 135.8 11.4 87 134-222 10-100 (106)
41 1x5t_A Splicing factor 3B subu 99.8 6.2E-20 2.1E-24 134.5 9.9 86 135-222 3-90 (96)
42 2cpz_A CUG triplet repeat RNA- 99.8 1.1E-19 3.8E-24 137.8 11.2 86 135-222 23-109 (115)
43 3s8s_A Histone-lysine N-methyl 99.8 8.1E-20 2.8E-24 137.3 10.3 75 57-131 5-79 (110)
44 2lkz_A RNA-binding protein 5; 99.8 2.4E-20 8.1E-25 136.3 7.0 81 135-217 7-94 (95)
45 2dhg_A TRNA selenocysteine ass 99.8 1.7E-19 5.9E-24 134.2 11.9 87 134-222 6-94 (104)
46 2cqb_A Peptidyl-prolyl CIS-tra 99.8 6.7E-20 2.3E-24 135.9 9.6 87 135-223 10-97 (102)
47 3ex7_B RNA-binding protein 8A; 99.8 8.8E-20 3E-24 140.6 10.6 88 134-223 19-107 (126)
48 2dnm_A SRP46 splicing factor; 99.8 1.1E-19 3.8E-24 135.0 10.7 87 134-222 10-97 (103)
49 2cph_A RNA binding motif prote 99.8 2.6E-19 9E-24 133.9 12.6 88 133-222 11-101 (107)
50 2dnh_A Bruno-like 5, RNA bindi 99.8 3.3E-19 1.1E-23 132.9 12.9 88 135-222 13-101 (105)
51 2khc_A Testis-specific RNP-typ 99.8 3.7E-19 1.3E-23 135.5 13.2 78 54-131 36-113 (118)
52 2do4_A Squamous cell carcinoma 99.8 2.3E-19 7.7E-24 132.6 11.5 85 134-220 14-98 (100)
53 1rk8_A CG8781-PA, CG8781-PA pr 99.8 8.9E-20 3E-24 147.3 10.0 116 105-222 11-156 (165)
54 2cqd_A RNA-binding region cont 99.8 3E-19 1E-23 135.6 12.2 87 133-222 13-100 (116)
55 2dgo_A Cytotoxic granule-assoc 99.8 5.4E-19 1.9E-23 133.9 13.4 87 134-222 12-99 (115)
56 2cq0_A Eukaryotic translation 99.8 1.4E-19 4.7E-24 134.5 9.7 87 134-222 12-99 (103)
57 3md1_A Nuclear and cytoplasmic 99.8 2.1E-19 7.3E-24 128.0 10.4 80 138-219 2-82 (83)
58 2do0_A HnRNP M, heterogeneous 99.8 7.1E-19 2.4E-23 133.1 13.6 86 134-221 12-97 (114)
59 3p5t_L Cleavage and polyadenyl 99.8 6.7E-20 2.3E-24 132.8 7.5 82 138-221 2-86 (90)
60 4f25_A Polyadenylate-binding p 99.8 1.5E-19 5E-24 137.2 9.7 82 137-221 5-86 (115)
61 2cqi_A Nucleolysin TIAR; RNA r 99.8 4.5E-19 1.5E-23 131.7 11.8 86 134-222 12-97 (103)
62 3bs9_A Nucleolysin TIA-1 isofo 99.8 2.3E-19 8E-24 128.9 9.8 81 136-218 5-86 (87)
63 2cpf_A RNA binding motif prote 99.8 3.1E-19 1.1E-23 131.3 10.6 86 135-222 3-92 (98)
64 1wi8_A EIF-4B, eukaryotic tran 99.8 2.4E-19 8.3E-24 133.4 10.0 84 135-222 13-98 (104)
65 1x4h_A RNA-binding protein 28; 99.8 5E-19 1.7E-23 133.2 11.9 88 133-222 11-105 (111)
66 2cq3_A RNA-binding protein 9; 99.8 5.6E-19 1.9E-23 131.2 12.0 87 133-222 11-97 (103)
67 1x4a_A Splicing factor, argini 99.8 4.2E-19 1.4E-23 133.3 11.3 85 134-222 19-103 (109)
68 2cpe_A RNA-binding protein EWS 99.8 2.7E-19 9.1E-24 135.2 10.0 88 133-222 11-107 (113)
69 2x1f_A MRNA 3'-END-processing 99.8 3.8E-19 1.3E-23 130.4 10.4 82 137-220 2-84 (96)
70 2cpz_A CUG triplet repeat RNA- 99.8 9.2E-19 3.1E-23 132.7 12.7 77 56-132 23-99 (115)
71 1p27_B RNA-binding protein 8A; 99.8 4.7E-19 1.6E-23 132.3 10.9 83 135-219 21-104 (106)
72 2hgn_A Heterogeneous nuclear r 99.8 5.3E-20 1.8E-24 143.7 5.7 117 101-221 2-126 (139)
73 2div_A TRNA selenocysteine ass 99.8 3.7E-19 1.3E-23 131.1 9.9 83 135-219 7-95 (99)
74 1s79_A Lupus LA protein; RRM, 99.8 3.7E-19 1.3E-23 132.0 9.8 82 133-217 7-88 (103)
75 2dng_A Eukaryotic translation 99.8 5E-19 1.7E-23 131.5 10.4 84 135-222 13-97 (103)
76 3mdf_A Peptidyl-prolyl CIS-tra 99.8 3.3E-19 1.1E-23 127.5 9.1 80 135-216 5-85 (85)
77 2kxn_B Transformer-2 protein h 99.8 5.8E-19 2E-23 136.5 10.6 86 133-220 42-128 (129)
78 1oo0_B CG8781-PA, drosophila Y 99.8 4.5E-19 1.5E-23 133.3 9.6 87 133-221 22-109 (110)
79 2dgv_A HnRNP M, heterogeneous 99.8 1E-18 3.5E-23 126.9 11.1 84 135-221 6-89 (92)
80 2la6_A RNA-binding protein FUS 99.8 9.3E-19 3.2E-23 129.0 11.0 81 134-216 10-99 (99)
81 3n9u_C Cleavage and polyadenyl 99.8 3.6E-19 1.2E-23 142.1 9.4 76 57-132 54-131 (156)
82 3p5t_L Cleavage and polyadenyl 99.8 1.8E-19 6.2E-24 130.5 7.0 74 59-132 2-77 (90)
83 2dgo_A Cytotoxic granule-assoc 99.8 9.2E-19 3.1E-23 132.7 11.2 78 54-131 11-88 (115)
84 2cqc_A Arginine/serine-rich sp 99.8 9.1E-19 3.1E-23 128.0 10.8 76 56-131 13-88 (95)
85 2ywk_A Putative RNA-binding pr 99.8 4.8E-19 1.6E-23 129.5 9.1 81 135-217 14-94 (95)
86 1x5u_A Splicing factor 3B subu 99.8 8.3E-19 2.8E-23 130.7 10.5 77 55-131 12-88 (105)
87 2e5h_A Zinc finger CCHC-type a 99.8 6.3E-19 2.1E-23 128.6 9.5 81 134-216 13-94 (94)
88 2dgx_A KIAA0430 protein; RRM d 99.8 7.6E-19 2.6E-23 128.8 9.9 83 135-221 7-93 (96)
89 2e5h_A Zinc finger CCHC-type a 99.8 9.9E-19 3.4E-23 127.5 10.4 75 57-131 15-89 (94)
90 1x4e_A RNA binding motif, sing 99.8 4.6E-19 1.6E-23 126.8 8.5 77 57-133 4-80 (85)
91 2cqc_A Arginine/serine-rich sp 99.8 6.9E-19 2.4E-23 128.6 9.6 81 135-217 13-94 (95)
92 2do4_A Squamous cell carcinoma 99.8 1.7E-18 5.7E-23 127.9 11.7 76 55-131 14-89 (100)
93 2jrs_A RNA-binding protein 39; 99.8 9.7E-19 3.3E-23 131.1 10.5 85 132-218 21-106 (108)
94 1wez_A HnRNP H', FTP-3, hetero 99.8 6.1E-19 2.1E-23 130.7 9.3 83 134-220 12-94 (102)
95 2dnq_A RNA-binding protein 4B; 99.8 2.5E-18 8.6E-23 124.4 12.1 79 135-222 6-84 (90)
96 1sjq_A Polypyrimidine tract-bi 99.8 5E-19 1.7E-23 130.8 8.4 82 134-222 13-96 (105)
97 2cq0_A Eukaryotic translation 99.8 9.1E-19 3.1E-23 130.0 9.8 78 54-131 11-88 (103)
98 3lqv_A PRE-mRNA branch site pr 99.8 4.4E-19 1.5E-23 134.5 8.1 103 57-163 7-109 (115)
99 2lkz_A RNA-binding protein 5; 99.8 2.6E-19 8.8E-24 130.7 6.5 72 59-130 10-87 (95)
100 2dh8_A DAZ-associated protein 99.8 4.9E-19 1.7E-23 131.9 8.2 86 134-222 13-99 (105)
101 4a8x_A RNA-binding protein wit 99.8 6.9E-19 2.4E-23 126.7 8.5 82 136-219 3-86 (88)
102 2la6_A RNA-binding protein FUS 99.8 2E-18 6.8E-23 127.2 11.2 75 57-131 12-94 (99)
103 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.1E-18 3.7E-23 124.8 9.5 76 56-131 5-80 (85)
104 1x4b_A Heterogeneous nuclear r 99.8 8.3E-19 2.9E-23 133.1 9.4 83 137-222 27-110 (116)
105 1x5o_A RNA binding motif, sing 99.8 1.8E-18 6.3E-23 130.8 11.2 88 131-218 19-112 (114)
106 2dnm_A SRP46 splicing factor; 99.8 1.3E-18 4.4E-23 129.2 10.1 77 55-131 10-86 (103)
107 3ulh_A THO complex subunit 4; 99.8 1.4E-18 4.9E-23 129.9 10.3 81 134-216 26-106 (107)
108 2dgs_A DAZ-associated protein 99.8 1.9E-18 6.5E-23 127.3 10.8 75 56-131 8-82 (99)
109 2cph_A RNA binding motif prote 99.8 1.7E-18 5.9E-23 129.4 10.6 77 55-131 12-90 (107)
110 2cq4_A RNA binding motif prote 99.8 1E-18 3.6E-23 132.2 9.5 77 54-131 21-97 (114)
111 3n9u_C Cleavage and polyadenyl 99.8 1.1E-18 3.8E-23 139.3 10.0 81 136-218 54-137 (156)
112 2m2b_A RNA-binding protein 10; 99.8 5.2E-19 1.8E-23 137.3 7.8 84 135-221 21-111 (131)
113 2dnh_A Bruno-like 5, RNA bindi 99.8 3.2E-18 1.1E-22 127.5 11.9 70 57-127 14-83 (105)
114 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.5E-18 5.3E-23 124.6 9.8 75 57-131 5-79 (87)
115 3ns6_A Eukaryotic translation 99.8 4.6E-19 1.6E-23 131.0 7.1 75 57-131 5-86 (100)
116 2wbr_A GW182, gawky, LD47780P; 99.8 1E-18 3.4E-23 123.6 8.5 73 137-216 7-79 (89)
117 2kxn_B Transformer-2 protein h 99.8 1.8E-18 6.1E-23 133.8 10.7 78 55-132 43-120 (129)
118 3r27_A HnRNP L, heterogeneous 99.8 2E-18 6.7E-23 126.3 10.1 78 135-219 19-98 (100)
119 2fc9_A NCL protein; structure 99.8 1.2E-18 4E-23 129.0 9.1 84 134-222 12-95 (101)
120 1p1t_A Cleavage stimulation fa 99.8 1.1E-18 3.7E-23 129.8 8.9 84 136-221 7-91 (104)
121 3ns6_A Eukaryotic translation 99.8 4.9E-19 1.7E-23 130.8 6.9 81 137-218 6-93 (100)
122 3s7r_A Heterogeneous nuclear r 99.8 1.3E-18 4.5E-23 125.0 8.9 75 55-130 8-82 (87)
123 3ucg_A Polyadenylate-binding p 99.8 1.9E-18 6.6E-23 124.6 9.8 80 136-218 5-85 (89)
124 1x5s_A Cold-inducible RNA-bind 99.8 1.9E-18 6.6E-23 128.0 10.0 75 57-131 11-85 (102)
125 2dgu_A Heterogeneous nuclear r 99.8 4.5E-18 1.5E-22 126.3 12.0 79 135-222 9-87 (103)
126 2lxi_A RNA-binding protein 10; 99.8 2.3E-19 8E-24 130.2 4.9 73 59-131 2-76 (91)
127 2cpi_A CCR4-NOT transcription 99.8 1.1E-18 3.8E-23 131.4 8.8 85 134-220 12-103 (111)
128 2hvz_A Splicing factor, argini 99.8 9.9E-19 3.4E-23 129.4 8.4 83 59-146 1-100 (101)
129 2dgp_A Bruno-like 4, RNA bindi 99.8 1.8E-18 6.3E-23 129.0 9.9 77 55-131 10-89 (106)
130 2cqg_A TDP-43, TAR DNA-binding 99.8 2.9E-18 9.9E-23 127.3 10.9 78 55-132 12-92 (103)
131 2wbr_A GW182, gawky, LD47780P; 99.8 1.7E-18 5.8E-23 122.4 9.0 82 58-159 7-88 (89)
132 2ywk_A Putative RNA-binding pr 99.8 2.1E-18 7.3E-23 126.0 10.0 76 55-131 13-88 (95)
133 1whw_A Hypothetical protein ri 99.8 1.5E-18 5.3E-23 127.8 9.2 76 56-131 6-81 (99)
134 1p27_B RNA-binding protein 8A; 99.8 2.3E-18 8E-23 128.4 10.3 76 56-131 21-96 (106)
135 3md1_A Nuclear and cytoplasmic 99.8 2.2E-18 7.4E-23 122.7 9.7 73 59-131 2-74 (83)
136 1u6f_A Tcubp1, RNA-binding pro 99.8 6.6E-18 2.3E-22 132.3 13.3 81 51-131 35-115 (139)
137 2cqg_A TDP-43, TAR DNA-binding 99.8 4.4E-18 1.5E-22 126.3 11.6 86 133-222 11-97 (103)
138 1wex_A Hypothetical protein (r 99.8 5.7E-18 1.9E-22 125.7 12.1 81 135-222 13-95 (104)
139 2dnz_A Probable RNA-binding pr 99.8 2.6E-18 8.9E-23 125.6 10.1 75 57-131 4-78 (95)
140 2khc_A Testis-specific RNP-typ 99.8 8E-19 2.7E-23 133.6 7.7 80 135-216 38-118 (118)
141 2jrs_A RNA-binding protein 39; 99.8 4.1E-18 1.4E-22 127.6 11.4 77 56-132 24-100 (108)
142 2mss_A Protein (musashi1); RNA 99.8 1.2E-18 4E-23 121.7 7.8 74 139-215 1-75 (75)
143 1s79_A Lupus LA protein; RRM, 99.8 1.8E-18 6.3E-23 128.3 9.4 77 53-131 6-82 (103)
144 1x4h_A RNA-binding protein 28; 99.8 4E-18 1.4E-22 128.2 11.2 76 56-131 13-94 (111)
145 2dh8_A DAZ-associated protein 99.8 3.9E-18 1.3E-22 127.0 11.0 76 55-131 13-88 (105)
146 2fc8_A NCL protein; structure 99.8 2.5E-18 8.6E-23 127.4 9.9 84 134-222 12-96 (102)
147 1x4c_A Splicing factor, argini 99.8 4.3E-18 1.5E-22 127.5 11.1 83 135-223 13-98 (108)
148 2d9p_A Polyadenylate-binding p 99.8 3.5E-18 1.2E-22 126.8 10.5 75 55-131 12-86 (103)
149 2div_A TRNA selenocysteine ass 99.8 2.2E-18 7.4E-23 127.0 9.2 73 57-129 8-81 (99)
150 2m2b_A RNA-binding protein 10; 99.8 2.6E-18 8.9E-23 133.3 10.1 76 56-132 21-102 (131)
151 2cqd_A RNA-binding region cont 99.8 2.9E-18 9.9E-23 130.1 10.1 77 54-131 13-89 (116)
152 1x4d_A Matrin 3; structural ge 99.8 1.4E-18 4.8E-23 128.2 8.1 79 135-220 13-94 (102)
153 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.8E-18 6.2E-23 128.1 8.7 75 57-131 11-85 (102)
154 2x1f_A MRNA 3'-END-processing 99.8 2.6E-18 9.1E-23 125.8 9.5 75 58-132 2-76 (96)
155 2ad9_A Polypyrimidine tract-bi 99.8 6.2E-18 2.1E-22 128.0 11.6 82 134-222 28-111 (119)
156 2dgw_A Probable RNA-binding pr 99.8 3.4E-18 1.2E-22 124.0 9.7 81 134-218 7-87 (91)
157 2hvz_A Splicing factor, argini 99.8 4.4E-18 1.5E-22 125.8 10.4 78 138-221 1-78 (101)
158 2cqp_A RNA-binding protein 12; 99.8 1.6E-18 5.5E-23 127.4 7.8 75 57-131 14-88 (98)
159 1wg5_A Heterogeneous nuclear r 99.8 4.9E-18 1.7E-22 126.3 10.4 83 135-220 13-96 (104)
160 1x5o_A RNA binding motif, sing 99.8 1.4E-17 4.9E-22 125.8 13.2 77 54-131 21-97 (114)
161 2rs2_A Musashi-1, RNA-binding 99.8 3.2E-18 1.1E-22 128.4 9.5 86 133-221 21-107 (109)
162 2cq4_A RNA binding motif prote 99.8 6.3E-19 2.1E-23 133.4 5.6 82 137-221 25-107 (114)
163 2cqp_A RNA-binding protein 12; 99.8 9.6E-19 3.3E-23 128.7 6.4 82 135-218 13-95 (98)
164 3s7r_A Heterogeneous nuclear r 99.8 3.6E-18 1.2E-22 122.7 9.3 80 133-215 7-87 (87)
165 2cpe_A RNA-binding protein EWS 99.8 4.5E-18 1.5E-22 128.5 10.0 78 54-131 11-96 (113)
166 2cq1_A PTB-like protein L; RRM 99.8 6.6E-18 2.2E-22 124.6 10.6 81 135-222 13-95 (101)
167 2dgt_A RNA-binding protein 30; 99.8 6.6E-18 2.3E-22 122.7 10.5 80 134-222 7-86 (92)
168 2dis_A Unnamed protein product 99.8 9.7E-18 3.3E-22 125.7 11.8 85 135-221 6-95 (109)
169 2lcw_A RNA-binding protein FUS 99.6 7.2E-20 2.5E-24 139.1 0.0 86 135-222 5-99 (116)
170 2kt5_A RNA and export factor-b 99.7 5.2E-18 1.8E-22 130.3 10.4 85 135-221 33-117 (124)
171 2hgl_A HNRPF protein, heteroge 99.7 1.5E-18 5.1E-23 135.0 7.2 85 132-219 39-126 (136)
172 1uaw_A Mouse-musashi-1; RNP-ty 99.7 2E-18 6.9E-23 121.0 7.2 75 138-215 1-76 (77)
173 1why_A Hypothetical protein ri 99.7 9.9E-18 3.4E-22 123.0 11.3 79 134-219 14-94 (97)
174 2dng_A Eukaryotic translation 99.7 7E-18 2.4E-22 125.2 10.5 73 57-131 14-86 (103)
175 2err_A Ataxin-2-binding protei 99.7 2.5E-18 8.7E-23 129.0 8.1 84 132-218 24-107 (109)
176 2jwn_A Embryonic polyadenylate 99.7 5E-18 1.7E-22 130.4 9.9 80 137-219 36-116 (124)
177 1wi8_A EIF-4B, eukaryotic tran 99.7 6.4E-18 2.2E-22 125.6 10.2 73 57-131 14-87 (104)
178 1x4e_A RNA binding motif, sing 99.7 8.4E-19 2.9E-23 125.5 5.1 80 135-216 3-83 (85)
179 2ek1_A RNA-binding protein 12; 99.7 1.1E-18 3.6E-23 127.6 5.8 80 136-217 14-94 (95)
180 2cpj_A Non-POU domain-containi 99.7 8.5E-18 2.9E-22 123.8 10.7 81 135-222 13-93 (99)
181 2dnp_A RNA-binding protein 14; 99.7 8.4E-18 2.9E-22 121.6 10.5 80 134-222 6-85 (90)
182 1oo0_B CG8781-PA, drosophila Y 99.7 5.2E-18 1.8E-22 127.4 9.7 76 56-131 24-99 (110)
183 2dhg_A TRNA selenocysteine ass 99.7 9.1E-18 3.1E-22 124.8 10.9 75 56-131 7-83 (104)
184 2ki2_A SS-DNA binding protein 99.7 9E-19 3.1E-23 126.7 5.2 80 138-220 2-82 (90)
185 2fy1_A RNA-binding motif prote 99.7 4.8E-18 1.6E-22 128.9 9.5 75 56-131 5-79 (116)
186 2ek1_A RNA-binding protein 12; 99.7 1.4E-18 4.7E-23 127.0 6.2 75 58-132 15-89 (95)
187 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.7E-18 5.8E-23 127.9 6.7 81 135-219 17-99 (100)
188 2cpx_A Hypothetical protein FL 99.7 1.6E-18 5.6E-23 131.2 6.7 83 135-222 23-109 (115)
189 2cpf_A RNA binding motif prote 99.7 4.8E-18 1.6E-22 124.9 8.9 75 57-131 4-81 (98)
190 2jvr_A Nucleolar protein 3; RN 99.7 2.7E-18 9.4E-23 128.8 7.7 80 135-219 26-106 (111)
191 1x5t_A Splicing factor 3B subu 99.7 3E-18 1E-22 125.4 7.7 75 57-131 4-79 (96)
192 1x4f_A Matrin 3; structural ge 99.7 5E-18 1.7E-22 127.1 9.0 83 133-222 21-106 (112)
193 2cq3_A RNA-binding protein 9; 99.7 1.5E-17 5.1E-22 123.4 11.6 76 55-132 12-87 (103)
194 2e5j_A Methenyltetrahydrofolat 99.7 9.1E-18 3.1E-22 123.2 10.2 80 134-219 16-95 (97)
195 1x4g_A Nucleolysin TIAR; struc 99.7 1.2E-17 4.2E-22 125.2 10.9 82 134-222 22-103 (109)
196 2rs2_A Musashi-1, RNA-binding 99.7 2.8E-18 9.5E-23 128.8 7.3 77 53-130 20-96 (109)
197 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.1E-17 3.8E-22 131.0 11.1 76 56-131 61-136 (140)
198 2cqi_A Nucleolysin TIAR; RNA r 99.7 1.3E-17 4.5E-22 123.7 10.9 75 55-131 12-86 (103)
199 3ulh_A THO complex subunit 4; 99.7 9.5E-18 3.3E-22 125.3 10.2 75 56-131 27-101 (107)
200 3q2s_C Cleavage and polyadenyl 99.7 3E-18 1E-22 145.4 8.3 74 57-130 67-142 (229)
201 2do0_A HnRNP M, heterogeneous 99.7 1.7E-17 5.7E-22 125.4 11.5 74 57-131 14-87 (114)
202 2a3j_A U1 small nuclear ribonu 99.7 1.3E-17 4.4E-22 128.2 11.0 83 135-221 27-113 (127)
203 3ucg_A Polyadenylate-binding p 99.7 7.7E-18 2.6E-22 121.4 9.1 75 57-132 5-79 (89)
204 2nlw_A Eukaryotic translation 99.7 4.5E-18 1.5E-22 126.8 8.0 82 135-219 13-101 (105)
205 2cpy_A RNA-binding protein 12; 99.7 7.8E-19 2.7E-23 132.9 3.9 84 134-220 12-96 (114)
206 1x4b_A Heterogeneous nuclear r 99.7 5.6E-18 1.9E-22 128.5 8.7 76 55-131 24-99 (116)
207 1fj7_A Nucleolin RBD1, protein 99.7 1E-18 3.6E-23 129.2 4.4 84 135-222 15-99 (101)
208 2err_A Ataxin-2-binding protei 99.7 8.2E-18 2.8E-22 126.2 9.3 81 53-135 24-104 (109)
209 4a8x_A RNA-binding protein wit 99.7 5.7E-18 2E-22 121.8 8.0 75 57-131 3-78 (88)
210 2krb_A Eukaryotic translation 99.7 4.1E-18 1.4E-22 120.8 7.0 70 59-130 2-78 (81)
211 3ex7_B RNA-binding protein 8A; 99.7 9E-18 3.1E-22 129.3 9.6 76 56-131 20-95 (126)
212 1x4a_A Splicing factor, argini 99.7 4.5E-17 1.5E-21 122.1 13.0 74 55-131 19-92 (109)
213 1wg5_A Heterogeneous nuclear r 99.7 8.4E-18 2.9E-22 125.0 8.9 74 56-131 13-87 (104)
214 2cpd_A Apobec-1 stimulating pr 99.7 2.3E-17 7.8E-22 121.5 11.1 78 135-221 13-92 (99)
215 1p1t_A Cleavage stimulation fa 99.7 2.9E-18 9.8E-23 127.5 6.3 75 57-131 7-81 (104)
216 1wf1_A RNA-binding protein RAL 99.7 1.3E-17 4.6E-22 125.2 10.0 77 137-222 27-104 (110)
217 1sjq_A Polypyrimidine tract-bi 99.7 1.6E-17 5.3E-22 122.7 10.0 69 57-131 15-85 (105)
218 2kvi_A Nuclear polyadenylated 99.7 1.2E-17 4E-22 122.4 9.2 79 134-221 7-86 (96)
219 2krb_A Eukaryotic translation 99.7 4.2E-18 1.4E-22 120.7 6.5 72 138-212 2-80 (81)
220 2dgv_A HnRNP M, heterogeneous 99.7 2.6E-17 9E-22 119.4 10.9 73 57-131 7-79 (92)
221 2db1_A Heterogeneous nuclear r 99.7 4.2E-18 1.5E-22 129.6 7.0 83 134-219 14-99 (118)
222 2mss_A Protein (musashi1); RNA 99.7 4.3E-18 1.5E-22 118.8 6.4 71 60-131 1-71 (75)
223 1uaw_A Mouse-musashi-1; RNP-ty 99.7 3.9E-18 1.4E-22 119.5 6.2 71 59-130 1-71 (77)
224 1wel_A RNA-binding protein 12; 99.7 6.8E-18 2.3E-22 129.7 7.7 74 57-131 24-97 (124)
225 2kt5_A RNA and export factor-b 99.7 6.9E-17 2.3E-21 124.0 13.3 77 55-132 32-108 (124)
226 1wez_A HnRNP H', FTP-3, hetero 99.7 1.1E-17 3.7E-22 124.0 8.4 72 57-131 14-85 (102)
227 2cqh_A IGF-II mRNA-binding pro 99.7 1.4E-17 4.7E-22 121.2 8.8 79 135-221 6-86 (93)
228 1h2v_Z 20 kDa nuclear CAP bind 99.7 2.2E-17 7.4E-22 132.0 10.7 75 56-130 37-111 (156)
229 2db1_A Heterogeneous nuclear r 99.7 8.5E-18 2.9E-22 127.9 7.8 73 57-131 16-91 (118)
230 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.1E-17 3.9E-22 131.0 8.8 80 134-215 60-140 (140)
231 2cpy_A RNA-binding protein 12; 99.7 7.7E-18 2.6E-22 127.4 7.5 73 57-131 14-87 (114)
232 2j76_E EIF-4B, EIF4B, eukaryot 99.7 6.8E-18 2.3E-22 124.6 7.0 76 55-132 16-92 (100)
233 2cpi_A CCR4-NOT transcription 99.7 1E-17 3.4E-22 126.1 8.0 79 55-133 12-96 (111)
234 2dnn_A RNA-binding protein 12; 99.7 1E-17 3.4E-22 125.4 8.0 72 57-131 15-86 (109)
235 3beg_B Splicing factor, argini 99.7 2.9E-17 9.9E-22 124.4 10.5 80 135-222 14-98 (115)
236 2dnn_A RNA-binding protein 12; 99.7 1.2E-17 4.2E-22 124.9 8.0 78 137-218 16-93 (109)
237 2ytc_A PRE-mRNA-splicing facto 99.7 2.4E-17 8.3E-22 117.8 9.1 76 134-216 9-85 (85)
238 1iqt_A AUF1, heterogeneous nuc 99.7 6.6E-18 2.3E-22 117.8 5.9 74 139-215 1-75 (75)
239 2dgw_A Probable RNA-binding pr 99.7 3E-17 1E-21 118.9 9.6 73 56-131 8-80 (91)
240 2dgx_A KIAA0430 protein; RRM d 99.7 2.9E-17 1E-21 120.3 9.5 73 57-132 8-84 (96)
241 1whx_A Hypothetical protein ri 99.7 1.7E-17 5.8E-22 124.9 8.5 76 136-218 9-84 (111)
242 2hgl_A HNRPF protein, heteroge 99.7 9.8E-18 3.3E-22 130.4 7.3 75 55-131 41-118 (136)
243 2jvo_A Nucleolar protein 3; nu 99.7 2.3E-17 7.7E-22 123.5 9.1 81 132-221 26-106 (108)
244 1sjr_A Polypyrimidine tract-bi 99.7 6.8E-17 2.3E-21 128.4 12.3 79 138-219 47-125 (164)
245 2la4_A Nuclear and cytoplasmic 99.7 1.5E-17 5.3E-22 122.9 7.9 76 135-217 25-100 (101)
246 2lmi_A GRSF-1, G-rich sequence 99.7 7.6E-18 2.6E-22 125.9 6.1 83 134-219 8-93 (107)
247 2ki2_A SS-DNA binding protein 99.7 4.5E-18 1.5E-22 123.0 4.6 73 59-132 2-74 (90)
248 1fjc_A Nucleolin RBD2, protein 99.7 6.9E-18 2.4E-22 123.5 5.5 82 135-222 14-95 (96)
249 2xnq_A Nuclear polyadenylated 99.7 6.4E-17 2.2E-21 118.7 10.3 77 133-218 18-95 (97)
250 1nu4_A U1A RNA binding domain; 99.7 1.5E-17 5.1E-22 122.0 6.8 83 134-220 5-91 (97)
251 3lqv_A PRE-mRNA branch site pr 99.7 8.8E-17 3E-21 121.7 11.2 82 135-220 6-87 (115)
252 2nlw_A Eukaryotic translation 99.7 3.1E-17 1.1E-21 122.2 8.6 73 57-131 14-93 (105)
253 2cq2_A Hypothetical protein LO 99.7 3.7E-17 1.3E-21 122.5 8.7 85 133-222 21-110 (114)
254 2lea_A Serine/arginine-rich sp 99.7 1.4E-17 4.8E-22 129.7 6.7 78 54-131 43-120 (135)
255 1wel_A RNA-binding protein 12; 99.7 7.4E-18 2.5E-22 129.5 4.9 83 134-219 22-105 (124)
256 2cpj_A Non-POU domain-containi 99.7 7.8E-17 2.7E-21 118.6 10.2 72 56-133 13-84 (99)
257 2lmi_A GRSF-1, G-rich sequence 99.7 1.6E-17 5.6E-22 124.1 6.5 74 56-131 9-85 (107)
258 2kn4_A Immunoglobulin G-bindin 99.7 4.9E-17 1.7E-21 130.1 9.8 77 55-131 67-143 (158)
259 1x5p_A Negative elongation fac 99.7 1.2E-16 4E-21 117.2 11.0 80 134-222 12-91 (97)
260 1iqt_A AUF1, heterogeneous nuc 99.7 1.5E-17 5.2E-22 115.9 5.9 70 60-130 1-70 (75)
261 1x4c_A Splicing factor, argini 99.7 1.1E-16 3.7E-21 119.8 10.8 64 57-127 14-77 (108)
262 2f3j_A RNA and export factor b 99.7 5.5E-17 1.9E-21 132.2 9.9 83 135-219 86-168 (177)
263 2jwn_A Embryonic polyadenylate 99.7 3E-17 1E-21 126.0 7.8 76 56-132 34-109 (124)
264 2xs2_A Deleted in azoospermia- 99.7 1.3E-17 4.3E-22 123.6 5.4 74 56-130 7-83 (102)
265 2dis_A Unnamed protein product 99.7 3.8E-17 1.3E-21 122.5 8.0 75 57-131 7-85 (109)
266 2e44_A Insulin-like growth fac 99.7 1.3E-16 4.5E-21 116.6 10.7 79 135-218 13-92 (96)
267 1x4d_A Matrin 3; structural ge 99.7 6.2E-17 2.1E-21 119.4 8.7 69 57-131 14-85 (102)
268 2cq1_A PTB-like protein L; RRM 99.7 1.4E-16 4.7E-21 117.5 10.6 69 57-131 14-84 (101)
269 1wex_A Hypothetical protein (r 99.7 1.4E-16 4.7E-21 118.2 10.6 68 58-131 15-84 (104)
270 3zzy_A Polypyrimidine tract-bi 99.7 8.5E-17 2.9E-21 123.3 9.5 78 138-219 29-107 (130)
271 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1E-16 3.5E-21 129.3 10.5 76 56-131 70-145 (165)
272 2fc8_A NCL protein; structure 99.7 1.3E-16 4.4E-21 118.1 10.2 73 56-131 13-85 (102)
273 2dha_A FLJ20171 protein; RRM d 99.7 2.3E-17 7.8E-22 126.1 6.2 82 135-219 21-106 (123)
274 2e5i_A Heterogeneous nuclear r 99.7 1.7E-16 6E-21 121.0 11.0 76 139-219 27-103 (124)
275 2fc9_A NCL protein; structure 99.7 6.9E-17 2.4E-21 119.3 8.5 71 57-131 14-84 (101)
276 3r27_A HnRNP L, heterogeneous 99.7 1.7E-16 5.8E-21 116.0 10.2 69 57-131 20-90 (100)
277 2a3j_A U1 small nuclear ribonu 99.7 9.5E-17 3.2E-21 123.4 9.3 73 57-132 28-104 (127)
278 1why_A Hypothetical protein ri 99.7 2.8E-16 9.6E-21 115.2 11.4 69 57-131 16-86 (97)
279 1x4f_A Matrin 3; structural ge 99.7 1.2E-16 4.1E-21 119.6 9.2 70 56-131 23-95 (112)
280 4f02_A Polyadenylate-binding p 99.7 1.4E-16 4.8E-21 133.8 10.6 82 136-219 14-96 (213)
281 2hgm_A HNRPF protein, heteroge 99.7 7.8E-17 2.7E-21 123.4 8.2 73 56-131 40-114 (126)
282 2hgm_A HNRPF protein, heteroge 99.7 4.9E-17 1.7E-21 124.5 6.9 80 135-218 40-121 (126)
283 2e5j_A Methenyltetrahydrofolat 99.7 2.6E-16 8.8E-21 115.4 10.5 71 56-131 17-87 (97)
284 2dnl_A Cytoplasmic polyadenyla 99.7 4.9E-17 1.7E-21 123.0 6.8 71 57-128 7-83 (114)
285 2j8a_A Histone-lysine N-methyl 99.7 5.6E-17 1.9E-21 122.3 6.8 77 59-135 3-93 (136)
286 2e5g_A U6 snRNA-specific termi 99.7 1.7E-16 5.9E-21 115.6 9.3 79 135-221 6-85 (94)
287 1fj7_A Nucleolin RBD1, protein 99.7 2.2E-17 7.5E-22 122.1 4.5 73 57-131 16-88 (101)
288 2diu_A KIAA0430 protein; struc 99.7 2.5E-16 8.7E-21 112.3 9.7 73 137-220 8-86 (96)
289 2jvo_A Nucleolar protein 3; nu 99.7 1.5E-16 5.2E-21 119.0 9.1 71 53-131 26-96 (108)
290 2xs2_A Deleted in azoospermia- 99.7 2.9E-17 9.9E-22 121.6 5.0 81 136-220 8-88 (102)
291 2ad9_A Polypyrimidine tract-bi 99.7 2.2E-16 7.4E-21 119.5 9.8 69 57-131 30-100 (119)
292 1wf1_A RNA-binding protein RAL 99.7 5.3E-16 1.8E-20 116.4 11.9 67 57-131 26-93 (110)
293 2jvr_A Nucleolar protein 3; RN 99.7 7.3E-17 2.5E-21 121.0 7.0 72 57-132 27-99 (111)
294 2ytc_A PRE-mRNA-splicing facto 99.7 2.7E-16 9.1E-21 112.3 9.7 70 56-131 10-80 (85)
295 2dha_A FLJ20171 protein; RRM d 99.7 5.8E-17 2E-21 123.8 6.5 72 57-130 22-97 (123)
296 2la4_A Nuclear and cytoplasmic 99.7 3.1E-16 1.1E-20 115.8 10.3 71 57-133 26-96 (101)
297 2j8a_A Histone-lysine N-methyl 99.7 8.9E-17 3E-21 121.2 7.2 80 137-218 2-96 (136)
298 2dnq_A RNA-binding protein 4B; 99.7 4E-16 1.4E-20 112.7 10.4 67 57-131 7-73 (90)
299 1wg1_A KIAA1579 protein, homol 99.7 1.1E-16 3.8E-21 115.2 7.3 75 136-218 4-78 (88)
300 2f3j_A RNA and export factor b 99.7 1.5E-15 5E-20 123.7 14.8 76 55-131 85-160 (177)
301 3d2w_A TAR DNA-binding protein 99.7 1.5E-16 5.1E-21 114.8 7.9 79 134-220 8-86 (89)
302 2hgn_A Heterogeneous nuclear r 99.7 3.5E-17 1.2E-21 127.7 4.8 72 57-131 45-116 (139)
303 3egn_A RNA-binding protein 40; 99.7 7.1E-17 2.4E-21 127.1 6.4 86 134-221 42-133 (143)
304 1fxl_A Paraneoplastic encephal 99.7 4.3E-16 1.5E-20 125.1 10.9 82 137-220 2-84 (167)
305 2cpx_A Hypothetical protein FL 99.7 7.4E-17 2.5E-21 122.1 5.9 75 57-131 24-98 (115)
306 2lcw_A RNA-binding protein FUS 99.5 8.2E-18 2.8E-22 127.6 0.0 76 56-131 5-88 (116)
307 1x4g_A Nucleolysin TIAR; struc 99.7 4.1E-16 1.4E-20 116.8 9.2 71 55-131 22-92 (109)
308 2xnq_A Nuclear polyadenylated 99.7 5.9E-16 2E-20 113.5 9.7 69 55-131 19-88 (97)
309 1b7f_A Protein (SXL-lethal pro 99.6 3.9E-16 1.3E-20 125.6 9.5 82 136-219 2-84 (168)
310 3md3_A Nuclear and cytoplasmic 99.6 5.7E-16 2E-20 124.2 10.1 81 138-220 1-81 (166)
311 1whx_A Hypothetical protein ri 99.6 2.2E-16 7.5E-21 118.7 7.0 69 57-131 9-77 (111)
312 2cq2_A Hypothetical protein LO 99.6 4.6E-16 1.6E-20 116.5 8.5 62 58-125 25-88 (114)
313 2dgu_A Heterogeneous nuclear r 99.6 6.8E-16 2.3E-20 114.4 9.4 67 57-131 10-76 (103)
314 1nu4_A U1A RNA binding domain; 99.6 2.1E-16 7.3E-21 115.7 6.4 73 56-131 6-82 (97)
315 3beg_B Splicing factor, argini 99.6 2.7E-16 9.1E-21 119.1 6.8 66 57-129 15-80 (115)
316 1wf0_A TDP-43, TAR DNA-binding 99.6 1.8E-16 6E-21 114.1 5.4 78 135-222 3-82 (88)
317 2dgt_A RNA-binding protein 30; 99.6 9E-16 3.1E-20 111.3 9.2 69 55-131 7-75 (92)
318 2cpd_A Apobec-1 stimulating pr 99.6 2.1E-15 7.3E-20 110.9 11.2 68 56-131 13-82 (99)
319 2e44_A Insulin-like growth fac 99.6 7.6E-16 2.6E-20 112.5 8.7 71 57-131 14-85 (96)
320 2dnl_A Cytoplasmic polyadenyla 99.6 1.1E-15 3.9E-20 115.4 9.8 75 135-214 6-84 (114)
321 2bz2_A Negative elongation fac 99.6 1.3E-15 4.4E-20 116.3 9.9 78 135-221 37-114 (121)
322 3pgw_A U1-A; protein-RNA compl 99.6 5E-15 1.7E-19 129.5 15.0 82 134-219 6-91 (282)
323 2dnp_A RNA-binding protein 14; 99.6 1.2E-15 4.1E-20 110.1 8.9 68 56-131 7-74 (90)
324 2i2y_A Fusion protein consists 99.6 1.5E-15 5E-20 120.5 10.2 72 55-131 70-141 (150)
325 3tyt_A Heterogeneous nuclear r 99.6 1E-15 3.5E-20 127.7 9.6 78 136-219 3-81 (205)
326 2kvi_A Nuclear polyadenylated 99.6 1.1E-15 3.7E-20 111.8 8.5 68 56-131 8-76 (96)
327 2qfj_A FBP-interacting repress 99.6 1.7E-15 5.7E-20 127.0 10.7 81 137-219 28-109 (216)
328 2e5g_A U6 snRNA-specific termi 99.6 2.6E-15 8.8E-20 109.3 10.3 71 57-133 7-77 (94)
329 1fjc_A Nucleolin RBD2, protein 99.6 3.8E-16 1.3E-20 114.2 5.8 72 55-131 13-84 (96)
330 1wg1_A KIAA1579 protein, homol 99.6 6.9E-16 2.4E-20 111.0 7.1 74 57-137 4-77 (88)
331 1x5p_A Negative elongation fac 99.6 2.1E-15 7.2E-20 110.5 9.8 67 57-131 14-80 (97)
332 2pe8_A Splicing factor 45; RRM 99.6 2.9E-15 9.9E-20 111.2 10.2 81 135-217 6-93 (105)
333 2hzc_A Splicing factor U2AF 65 99.6 1.1E-15 3.9E-20 109.5 7.6 72 135-214 4-86 (87)
334 2g4b_A Splicing factor U2AF 65 99.6 2.9E-15 9.9E-20 121.0 10.7 74 58-131 94-167 (172)
335 1sjr_A Polypyrimidine tract-bi 99.6 1.8E-15 6.2E-20 120.2 9.0 70 58-131 46-117 (164)
336 1l3k_A Heterogeneous nuclear r 99.6 1.9E-15 6.4E-20 124.8 9.5 83 135-220 11-94 (196)
337 2e5i_A Heterogeneous nuclear r 99.6 9.3E-15 3.2E-19 111.4 12.6 76 59-140 26-104 (124)
338 3pgw_S U1-70K; protein-RNA com 99.6 1.8E-15 6.3E-20 139.9 10.2 77 56-132 100-176 (437)
339 2cqh_A IGF-II mRNA-binding pro 99.6 1E-15 3.6E-20 111.2 6.7 68 57-131 7-76 (93)
340 3d2w_A TAR DNA-binding protein 99.6 7.8E-16 2.7E-20 110.9 5.9 55 56-115 9-63 (89)
341 3zzy_A Polypyrimidine tract-bi 99.6 2.9E-15 1E-19 114.7 9.0 71 59-134 29-102 (130)
342 3u1l_A PRE-mRNA-splicing facto 99.6 2.5E-15 8.6E-20 127.2 9.5 79 134-219 131-230 (240)
343 3nmr_A Cugbp ELAV-like family 99.6 4.4E-15 1.5E-19 120.1 10.3 85 136-220 2-90 (175)
344 2yh0_A Splicing factor U2AF 65 99.6 7.7E-15 2.6E-19 121.2 11.9 77 56-132 112-188 (198)
345 2hzc_A Splicing factor U2AF 65 99.6 2.4E-15 8.1E-20 107.7 7.4 68 57-131 5-83 (87)
346 2voo_A Lupus LA protein; RNA-b 99.6 4E-15 1.4E-19 122.9 9.6 80 137-219 109-188 (193)
347 3egn_A RNA-binding protein 40; 99.6 6.2E-16 2.1E-20 121.6 4.0 76 56-131 43-123 (143)
348 1wf0_A TDP-43, TAR DNA-binding 99.6 1.8E-15 6.3E-20 108.7 4.5 57 57-118 4-60 (88)
349 2pe8_A Splicing factor 45; RRM 99.5 2.4E-14 8.3E-19 106.2 9.9 75 57-131 7-87 (105)
350 2diu_A KIAA0430 protein; struc 99.5 2.3E-14 8E-19 102.1 9.2 69 57-135 8-81 (96)
351 2adc_A Polypyrimidine tract-bi 99.5 2E-14 6.8E-19 122.0 10.4 80 133-218 30-110 (229)
352 2cjk_A Nuclear polyadenylated 99.5 5.7E-15 1.9E-19 118.7 6.5 74 57-131 86-159 (167)
353 2bz2_A Negative elongation fac 99.5 2E-14 6.9E-19 109.6 8.5 68 56-131 37-104 (121)
354 2dit_A HIV TAT specific factor 99.5 4.2E-14 1.4E-18 106.4 10.1 83 133-220 11-104 (112)
355 1jmt_A Splicing factor U2AF 35 99.5 4.4E-15 1.5E-19 110.1 4.3 72 142-215 20-103 (104)
356 3v4m_A Splicing factor U2AF 65 99.5 3.7E-14 1.3E-18 105.2 8.6 81 135-217 3-96 (105)
357 1qm9_A Polypyrimidine tract-bi 99.5 2.3E-14 7.9E-19 118.6 8.1 78 136-219 2-80 (198)
358 2voo_A Lupus LA protein; RNA-b 99.5 3.8E-14 1.3E-18 117.0 8.7 73 57-131 108-180 (193)
359 1fje_B Nucleolin RBD12, protei 99.5 7.9E-15 2.7E-19 118.9 3.0 85 133-220 9-93 (175)
360 3u1l_A PRE-mRNA-splicing facto 99.5 8.1E-14 2.8E-18 117.9 8.6 65 55-125 131-204 (240)
361 2d9o_A DNAJ (HSP40) homolog, s 99.5 2.4E-13 8.4E-18 99.6 10.0 68 147-222 27-94 (100)
362 3sde_A Paraspeckle component 1 99.5 1.2E-13 4.1E-18 119.5 8.5 75 136-217 21-95 (261)
363 3tht_A Alkylated DNA repair pr 99.5 1.4E-13 4.8E-18 122.5 8.9 80 133-217 14-98 (345)
364 3ue2_A Poly(U)-binding-splicin 99.5 1.4E-13 4.9E-18 104.1 7.6 80 136-217 19-108 (118)
365 2dit_A HIV TAT specific factor 99.4 8.2E-13 2.8E-17 99.2 10.1 74 57-134 14-98 (112)
366 3v4m_A Splicing factor U2AF 65 99.4 4.8E-13 1.6E-17 99.2 7.8 74 58-131 5-90 (105)
367 1jmt_A Splicing factor U2AF 35 99.4 9.4E-14 3.2E-18 102.9 3.7 68 63-131 20-99 (104)
368 3ue2_A Poly(U)-binding-splicin 99.4 1.1E-12 3.9E-17 99.1 7.9 74 58-131 20-102 (118)
369 3tht_A Alkylated DNA repair pr 99.4 5.9E-13 2E-17 118.5 7.3 62 58-125 18-81 (345)
370 3s6e_A RNA-binding protein 39; 99.3 2E-12 6.9E-17 97.0 6.4 77 136-217 6-92 (114)
371 2d9o_A DNAJ (HSP40) homolog, s 99.3 3.5E-11 1.2E-15 88.0 10.9 59 68-131 27-88 (100)
372 3s6e_A RNA-binding protein 39; 99.2 1.2E-10 4.2E-15 87.2 8.7 70 58-131 7-86 (114)
373 2dnr_A Synaptojanin-1; RRM dom 99.1 2.2E-10 7.6E-15 80.9 7.6 74 135-218 5-86 (91)
374 1owx_A Lupus LA protein, SS-B, 99.1 1.7E-10 5.8E-15 86.8 7.4 60 56-121 16-77 (121)
375 1owx_A Lupus LA protein, SS-B, 99.1 4.9E-10 1.7E-14 84.3 9.1 76 135-217 16-95 (121)
376 3dxb_A Thioredoxin N-terminall 99.0 1.4E-09 4.8E-14 91.4 8.3 67 149-217 141-212 (222)
377 1ufw_A Synaptojanin 2; RNP dom 98.9 9.3E-10 3.2E-14 78.1 5.0 74 134-217 12-94 (95)
378 3dxb_A Thioredoxin N-terminall 98.8 9.9E-09 3.4E-13 86.2 7.6 62 70-131 141-206 (222)
379 2dnr_A Synaptojanin-1; RRM dom 98.8 1E-08 3.5E-13 72.4 5.8 69 59-136 8-84 (91)
380 1ufw_A Synaptojanin 2; RNP dom 98.7 1.5E-08 5.1E-13 71.8 4.7 67 59-134 16-91 (95)
381 2l9w_A U4/U6 snRNA-associated- 98.5 5.3E-07 1.8E-11 65.2 8.0 74 134-214 18-96 (117)
382 2l9w_A U4/U6 snRNA-associated- 98.2 4.8E-06 1.7E-10 60.2 8.2 69 57-131 20-93 (117)
383 2dhx_A Poly (ADP-ribose) polym 98.1 1.7E-05 5.8E-10 56.9 8.8 83 58-150 8-99 (104)
384 1wey_A Calcipressin 1; structu 97.8 4.1E-05 1.4E-09 55.1 6.4 76 136-218 4-84 (104)
385 1uw4_A UPF3X; nonsense mediate 97.8 9.6E-05 3.3E-09 52.3 8.2 69 59-127 2-72 (91)
386 1whv_A Poly(A)-specific ribonu 97.8 0.00015 5.1E-09 51.3 8.8 54 59-121 17-70 (100)
387 1uw4_A UPF3X; nonsense mediate 97.7 0.00024 8.3E-09 50.2 8.6 80 138-217 2-87 (91)
388 2dhx_A Poly (ADP-ribose) polym 97.5 0.00099 3.4E-08 47.7 9.8 75 137-221 8-87 (104)
389 1whv_A Poly(A)-specific ribonu 97.3 0.001 3.5E-08 47.1 7.0 54 138-199 17-70 (100)
390 1wwh_A Nucleoporin 35, nucleop 97.2 0.00087 3E-08 49.6 7.0 66 54-127 20-85 (119)
391 1wey_A Calcipressin 1; structu 97.2 0.00077 2.6E-08 48.5 6.1 67 59-131 6-77 (104)
392 1wwh_A Nucleoporin 35, nucleop 97.1 0.0021 7.1E-08 47.5 7.7 72 137-216 24-95 (119)
393 3ctr_A Poly(A)-specific ribonu 97.1 0.0012 4E-08 46.9 6.1 54 60-121 7-60 (101)
394 2l08_A Regulator of nonsense t 96.9 0.0011 3.9E-08 47.0 4.6 80 137-216 9-94 (97)
395 3ctr_A Poly(A)-specific ribonu 96.9 0.0014 5E-08 46.5 5.1 53 139-199 8-60 (101)
396 2l08_A Regulator of nonsense t 96.9 0.00082 2.8E-08 47.8 3.8 70 59-128 10-81 (97)
397 3pq1_A Poly(A) RNA polymerase; 96.6 0.0012 4E-08 60.8 3.5 56 57-118 52-107 (464)
398 3pq1_A Poly(A) RNA polymerase; 94.9 0.014 4.8E-07 53.6 3.3 57 135-196 51-107 (464)
399 3p3d_A Nucleoporin 53; structu 94.9 0.023 7.8E-07 42.6 3.7 69 58-128 7-89 (132)
400 3p3d_A Nucleoporin 53; structu 94.5 0.032 1.1E-06 41.8 3.8 77 137-217 7-98 (132)
401 3d45_A Poly(A)-specific ribonu 91.7 0.55 1.9E-05 43.8 8.4 55 58-121 440-494 (507)
402 3d45_A Poly(A)-specific ribonu 86.9 1.5 5.1E-05 40.9 7.3 53 139-199 442-494 (507)
403 3lpe_A Putative transcription 61.7 29 0.001 23.8 6.5 52 85-159 40-91 (92)
404 2g0c_A ATP-dependent RNA helic 53.7 42 0.0014 21.7 6.6 59 148-216 12-75 (76)
405 4eyt_A Telomerase associated p 42.2 80 0.0027 21.5 8.5 58 137-201 12-69 (129)
406 4e8u_A Putative uncharacterize 33.3 87 0.003 24.3 5.6 49 61-112 15-74 (172)
407 3zzp_A TS9, ribosomal protein 30.7 1.1E+02 0.0038 20.1 5.2 56 102-161 7-68 (77)
408 3fut_A Dimethyladenosine trans 29.0 1.7E+02 0.006 24.2 7.4 32 138-170 111-142 (271)
409 1nz8_A Transcription antitermi 28.9 80 0.0027 22.6 4.6 49 99-162 61-116 (119)
410 4eyt_A Telomerase associated p 28.4 1.4E+02 0.0048 20.3 8.3 56 57-120 11-66 (129)
411 4bby_A Alkyldihydroxyacetoneph 26.4 55 0.0019 31.3 4.2 56 145-200 351-410 (658)
412 3fry_A Probable copper-exporti 25.7 1.2E+02 0.0042 18.7 6.8 55 138-198 7-61 (73)
413 3fut_A Dimethyladenosine trans 25.5 59 0.002 27.2 3.8 33 59-92 111-143 (271)
414 1fme_A FSD-EY peptide; beta-BE 25.2 38 0.0013 16.9 1.5 13 70-82 13-25 (28)
415 2f06_A Conserved hypothetical 25.2 2E+02 0.0067 20.9 11.8 113 72-203 20-135 (144)
416 3mfb_A Uncharacterized protein 24.7 1E+02 0.0034 23.6 4.5 36 70-105 3-41 (157)
417 3ts2_A Protein LIN-28 homolog 24.5 13 0.00043 28.3 -0.5 28 152-186 2-29 (148)
418 2x4i_A CAG38848, uncharacteriz 24.3 2E+02 0.0068 20.6 6.9 66 104-170 41-112 (114)
419 2lfv_A Protein DAMX; cell divi 29.0 17 0.00059 25.8 0.0 51 69-121 33-85 (106)
420 4a17_R RPL23A, 60S ribosomal p 22.8 1.9E+02 0.0064 21.9 5.6 55 140-196 89-145 (150)
421 3uzu_A Ribosomal RNA small sub 22.5 33 0.0011 28.9 1.6 33 60-92 116-148 (279)
422 1wvf_A 4-cresol dehydrogenase 21.8 44 0.0015 30.9 2.5 43 153-195 217-261 (520)
423 4e8u_A Putative uncharacterize 21.7 2.1E+02 0.007 22.2 5.8 56 139-196 14-81 (172)
424 2i9x_A Putative septation prot 21.2 1.2E+02 0.0041 20.6 3.9 26 84-109 5-30 (87)
425 1uta_A FTSN, MSGA, cell divisi 21.1 1.2E+02 0.0041 19.8 4.0 51 106-158 16-66 (81)
426 2e5p_A Protein PHF1, PHD finge 21.1 65 0.0022 20.7 2.3 11 177-187 36-46 (68)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=7.4e-38 Score=264.44 Aligned_cols=161 Identities=25% Similarity=0.396 Sum_probs=147.5
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceeccccc---
Q psy4086 58 KTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQE--- 134 (305)
Q Consensus 58 ~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~~~--- 134 (305)
.++|||+|||+++||++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++|++.+|+..+.++.++...
T Consensus 15 ~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~ 94 (213)
T 4f02_A 15 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQR 94 (213)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999988887766322
Q ss_pred ------CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCc
Q psy4086 135 ------QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKE 208 (305)
Q Consensus 135 ------~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 208 (305)
....+|||+|||+++++++|+++|++||.|++|+|++++. .++|||||+|.+.++|++||+.|||..|.| +
T Consensus 95 ~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~-~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g--~ 171 (213)
T 4f02_A 95 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLND--R 171 (213)
T ss_dssp CTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESSHHHHHHHHHHHTTCEETT--E
T ss_pred cccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC-CCceEEEEEeCCHHHHHHHHHHhCCCEECC--E
Confidence 2346899999999999999999999999999999999864 479999999999999999999999999999 7
Q ss_pred cEEEEeccCCCcC
Q psy4086 209 PLLVKFADSGLKK 221 (305)
Q Consensus 209 ~l~v~~a~~~~~~ 221 (305)
+|+|+++.++..+
T Consensus 172 ~i~V~~a~~~~~~ 184 (213)
T 4f02_A 172 KVFVGRFKSRKER 184 (213)
T ss_dssp ECEEEECCCHHHH
T ss_pred EEEEEEcCCCccc
Confidence 8999999876543
No 2
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=3.5e-36 Score=243.58 Aligned_cols=158 Identities=32% Similarity=0.559 Sum_probs=146.7
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceeccc-----
Q psy4086 58 KTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQ----- 132 (305)
Q Consensus 58 ~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~----- 132 (305)
+++|||+|||+++++++|+++|+.||+|.++++++++.+|+++|||||+|.+.++|++|++.|||..+.++.++.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 578999999999999999999999999999999999989999999999999999999999999998887776652
Q ss_pred --ccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCcc
Q psy4086 133 --QEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEP 209 (305)
Q Consensus 133 --~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~ 209 (305)
.....++|||+|||..+++++|+++|++||.|.++++..++ +|.++|||||+|.+.++|.+|++.|||..+.|+..+
T Consensus 82 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~ 161 (167)
T 1fxl_A 82 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEP 161 (167)
T ss_dssp CCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSC
T ss_pred CcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccc
Confidence 22345789999999999999999999999999999999998 889999999999999999999999999999997677
Q ss_pred EEEEec
Q psy4086 210 LLVKFA 215 (305)
Q Consensus 210 l~v~~a 215 (305)
|+|+||
T Consensus 162 i~v~~A 167 (167)
T 1fxl_A 162 ITVKFA 167 (167)
T ss_dssp CEEEEC
T ss_pred eEEEeC
Confidence 999986
No 3
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=4.9e-36 Score=243.23 Aligned_cols=159 Identities=32% Similarity=0.543 Sum_probs=147.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceeccc----
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQ---- 132 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~---- 132 (305)
..++|||+|||+++++++|+++|+.||+|.++++++++.+|+++|||||+|.+.++|++|++.|||..+.++.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 3578999999999999999999999999999999999989999999999999999999999999988887766552
Q ss_pred ---ccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCc
Q psy4086 133 ---QEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKE 208 (305)
Q Consensus 133 ---~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 208 (305)
.....++|||+|||..+++++|+++|++||.|..+++..++ ++.++|||||+|.+.++|.+|++.|||..+.|+.+
T Consensus 82 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~ 161 (168)
T 1b7f_A 82 PGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQ 161 (168)
T ss_dssp CCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSS
T ss_pred CCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCe
Confidence 22345789999999999999999999999999999999998 88999999999999999999999999999988778
Q ss_pred cEEEEec
Q psy4086 209 PLLVKFA 215 (305)
Q Consensus 209 ~l~v~~a 215 (305)
+|+|+||
T Consensus 162 ~l~V~~A 168 (168)
T 1b7f_A 162 PLSVRLA 168 (168)
T ss_dssp CCEEEEC
T ss_pred EEEEEeC
Confidence 8999986
No 4
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=4e-36 Score=249.91 Aligned_cols=165 Identities=21% Similarity=0.377 Sum_probs=141.0
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc---
Q psy4086 55 QLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR--- 131 (305)
Q Consensus 55 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~--- 131 (305)
....++|||+|||+++|+++|+++|+.||.|.+|+|++++.+|+++|||||+|.+.++|++|++. ++..+.++.+.
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 34568899999999999999999999999999999999999999999999999999999999986 55555544433
Q ss_pred --ccc--------CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCC
Q psy4086 132 --QQE--------QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNG 200 (305)
Q Consensus 132 --~~~--------~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g 200 (305)
... ...++|||+|||.++++++|+++|+.||.|..|+|+.++ ++.++|||||+|.+.++|.+|++. ++
T Consensus 89 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~ 167 (196)
T 1l3k_A 89 AVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KY 167 (196)
T ss_dssp CCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SC
T ss_pred ccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CC
Confidence 211 234789999999999999999999999999999999998 889999999999999999999986 79
Q ss_pred CCCCCCCccEEEEeccCCCcCCC
Q psy4086 201 STLPGSKEPLLVKFADSGLKKRG 223 (305)
Q Consensus 201 ~~~~g~~~~l~v~~a~~~~~~~~ 223 (305)
..|+| +.|.|+++.++.....
T Consensus 168 ~~~~G--~~i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 168 HTVNG--HNCEVRKALSKQEMAS 188 (196)
T ss_dssp CEETT--EECEEEECC-------
T ss_pred cEECC--EEEEEEecCChhHhcc
Confidence 99999 7799999998766553
No 5
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=9.2e-36 Score=243.09 Aligned_cols=160 Identities=23% Similarity=0.429 Sum_probs=142.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCC--CccceEEEEecchhhHHHHHHHhccCcccce---e--
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTN--KCRGYGFVDFESGGYALAAVKALQDKGIHAQ---M-- 129 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g--~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~---~-- 129 (305)
+.++|||+|||+++|+++|+++|++||+|.+|+|++++.++ +++|||||+|.+.++|++|++.|||..+... .
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 35789999999999999999999999999999999999876 8999999999999999999999998766422 1
Q ss_pred ---ccc---ccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCC
Q psy4086 130 ---ARQ---QEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTL 203 (305)
Q Consensus 130 ---~~~---~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 203 (305)
... .....++|||+|||.++++++|+++|++||.|.+++++.+++|.++|||||+|.+.++|.+|++.|||..+
T Consensus 82 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 161 (175)
T 3nmr_A 82 MKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQT 161 (175)
T ss_dssp EEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCC
T ss_pred EccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcc
Confidence 111 12245789999999999999999999999999999999999899999999999999999999999999877
Q ss_pred CC-CCccEEEEecc
Q psy4086 204 PG-SKEPLLVKFAD 216 (305)
Q Consensus 204 ~g-~~~~l~v~~a~ 216 (305)
.+ ..++|+|+||+
T Consensus 162 ~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 162 MEGCSSPMVVKFAD 175 (175)
T ss_dssp CTTCSSCCEEEECC
T ss_pred cCCCCCCeEEEecC
Confidence 53 34789999985
No 6
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=1.8e-35 Score=249.69 Aligned_cols=163 Identities=20% Similarity=0.326 Sum_probs=146.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceeccc----
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQ---- 132 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~---- 132 (305)
..++|||+|||+++|+++|+++|+.||+|.+|+|++++.+++++|||||+|.+.++|++|++.||+..|.++.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 4578999999999999999999999999999999999989999999999999999999999999988887776552
Q ss_pred --------------ccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHH
Q psy4086 133 --------------QEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQL 197 (305)
Q Consensus 133 --------------~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~ 197 (305)
.....++|||+|||.++++++|+++|++||.|+.|+|+.++ +|.++|||||+|.+.++|.+|++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 186 (216)
T 2qfj_A 107 NIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 186 (216)
T ss_dssp CCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHH
Confidence 12345789999999999999999999999999999999997 889999999999999999999999
Q ss_pred hCCCCCCCCCccEEEEeccCCCcC
Q psy4086 198 FNGSTLPGSKEPLLVKFADSGLKK 221 (305)
Q Consensus 198 l~g~~~~g~~~~l~v~~a~~~~~~ 221 (305)
|||..|.| +.|+|.|+..+...
T Consensus 187 l~g~~~~g--~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 187 MNLFDLGG--QYLRVGKAVTPPMP 208 (216)
T ss_dssp HTTCBCSS--SBCEEEECSSCSST
T ss_pred ccCCEeCC--cEEEEEEecCCCCC
Confidence 99999999 77999999886443
No 7
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=2.4e-36 Score=244.99 Aligned_cols=159 Identities=23% Similarity=0.456 Sum_probs=145.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHH---hccCcccceecccc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA---LQDKGIHAQMARQQ 133 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~---l~g~~i~~~~~~~~ 133 (305)
+.++|||+|||+++|+++|+++|+.||.|.+|+|++++.+|+++|||||+|.+.++|++|++. |+|+.|.+.+....
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~~ 81 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPR 81 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCCH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEcccccccch
Confidence 457899999999999999999999999999999999999999999999999999999999997 67777776665432
Q ss_pred --cCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccE
Q psy4086 134 --EQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPL 210 (305)
Q Consensus 134 --~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l 210 (305)
....++|||+|||.++++++|+++|+.||.|.+++++.++ +|.++|||||+|.+.++|.+|++ +++..+.| +.|
T Consensus 82 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g--~~i 158 (167)
T 2cjk_A 82 DEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKD--RKI 158 (167)
T ss_dssp HHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSS--SCE
T ss_pred hhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCC--eEE
Confidence 2345789999999999999999999999999999999997 89999999999999999999998 89999999 779
Q ss_pred EEEeccCC
Q psy4086 211 LVKFADSG 218 (305)
Q Consensus 211 ~v~~a~~~ 218 (305)
+|+|+.++
T Consensus 159 ~V~~a~pk 166 (167)
T 2cjk_A 159 EIKRAEPR 166 (167)
T ss_dssp EEEECCCC
T ss_pred EEeecCCC
Confidence 99999874
No 8
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-35 Score=239.47 Aligned_cols=156 Identities=26% Similarity=0.483 Sum_probs=142.9
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceeccc------
Q psy4086 59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQ------ 132 (305)
Q Consensus 59 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~------ 132 (305)
++|||+|||+++|+++|+++|++||+|.++++++++ +++++|||||+|.+.++|++|++.|||..+.++.++.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 579999999999999999999999999999999998 4789999999999999999999999999887776652
Q ss_pred ---ccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCc
Q psy4086 133 ---QEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKE 208 (305)
Q Consensus 133 ---~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 208 (305)
.....++|||+|||.++++++|+++|++||.|.++.++.++ ++.++|||||+|.+.++|.+|++.|||..+.| +
T Consensus 80 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~ 157 (166)
T 3md3_A 80 QQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG--R 157 (166)
T ss_dssp CCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETT--E
T ss_pred CCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCC--c
Confidence 22345789999999999999999999999999999999996 88999999999999999999999999999999 7
Q ss_pred cEEEEeccC
Q psy4086 209 PLLVKFADS 217 (305)
Q Consensus 209 ~l~v~~a~~ 217 (305)
.|+|.||+.
T Consensus 158 ~i~v~~a~~ 166 (166)
T 3md3_A 158 PLRINWAAK 166 (166)
T ss_dssp ECEEEESCC
T ss_pred EEEEEecCC
Confidence 899999863
No 9
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=6.6e-33 Score=232.37 Aligned_cols=153 Identities=16% Similarity=0.227 Sum_probs=132.7
Q ss_pred CCCeEEEcCCC-CCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceeccccc-
Q psy4086 57 SKTNLYIRGLT-QDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQE- 134 (305)
Q Consensus 57 ~~~~l~V~~Lp-~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~~~- 134 (305)
..++|||+||| +++|+++|+++|++||.|.+|+|+++ .+|||||+|.+.++|++|++.|||..+.++.++...
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 35789999999 89999999999999999999999875 378999999999999999999998877665543110
Q ss_pred -------------------------------------------CCCCceEEecCCCCCCHHHHHHHHhhCCCe--EEEEE
Q psy4086 135 -------------------------------------------QDPTNLYIANLPLNFKECDLESLLAKYVTV--VSTRI 169 (305)
Q Consensus 135 -------------------------------------------~~~~~l~V~nlp~~~te~~l~~~F~~~g~v--~~v~i 169 (305)
...++|||+|||+++|+++|+++|++||.| .++++
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~ 157 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV 157 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE
Confidence 112469999999999999999999999999 89999
Q ss_pred eeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCC--CccEEEEec
Q psy4086 170 LRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGS--KEPLLVKFA 215 (305)
Q Consensus 170 ~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~--~~~l~v~~a 215 (305)
+.++ +.++|||||+|.+.++|.+||..|||..|.+. +.++.|+|+
T Consensus 158 ~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 158 FSGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 8876 45679999999999999999999999999774 368888886
No 10
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=1e-32 Score=242.80 Aligned_cols=162 Identities=19% Similarity=0.270 Sum_probs=149.0
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceeccc-----
Q psy4086 58 KTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQ----- 132 (305)
Q Consensus 58 ~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~----- 132 (305)
.++|||+|||+++|+++|+++|+.||.|..++++.++.+|+++|||||+|.+.++|.+|++.|||..+.++.+..
T Consensus 95 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~ 174 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDA 174 (284)
T ss_dssp SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCG
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 467999999999999999999999999999999999999999999999999999999999999988887766551
Q ss_pred -----ccCCCCceEEecCCCCC-CHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCC
Q psy4086 133 -----QEQDPTNLYIANLPLNF-KECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGS 206 (305)
Q Consensus 133 -----~~~~~~~l~V~nlp~~~-te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 206 (305)
.....++|||+|||.++ ++++|+++|+.||.|.+++|+.+.+|.++|||||+|.+.++|.+|++.|||..|.|
T Consensus 175 ~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g- 253 (284)
T 3smz_A 175 GQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGG- 253 (284)
T ss_dssp GGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETT-
T ss_pred CCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC-
Confidence 22345789999999995 99999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEeccCCCcC
Q psy4086 207 KEPLLVKFADSGLKK 221 (305)
Q Consensus 207 ~~~l~v~~a~~~~~~ 221 (305)
++|+|.|+.++..+
T Consensus 254 -~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 254 -SHLRVSFCAPGPPG 267 (284)
T ss_dssp -EECEEEECCSSSCH
T ss_pred -eEEEEEEecCCCcc
Confidence 78999999886654
No 11
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=1.6e-32 Score=223.49 Aligned_cols=151 Identities=22% Similarity=0.393 Sum_probs=135.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcc----C-------CeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQY----G-------PIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGI 125 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~----G-------~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i 125 (305)
..++|||+|||+++|+++|+++|++| | .|.++.+. +++|||||+|.+.++|++|+ .|||..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 45789999999999999999999999 6 67777664 45789999999999999999 7999888
Q ss_pred cceeccccc-------CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHH
Q psy4086 126 HAQMARQQE-------QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQL 197 (305)
Q Consensus 126 ~~~~~~~~~-------~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~ 197 (305)
.++.++... ...++|||+|||.++++++|+++|++||.|..+++..++ +|.++|||||+|.+.++|.+|++.
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 155 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 155 (172)
T ss_dssp TTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHH
T ss_pred cCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 877765322 235789999999999999999999999999999999997 899999999999999999999999
Q ss_pred hCCCCCCCCCccEEEEecc
Q psy4086 198 FNGSTLPGSKEPLLVKFAD 216 (305)
Q Consensus 198 l~g~~~~g~~~~l~v~~a~ 216 (305)
|||..+.| +.|.|+||.
T Consensus 156 l~g~~~~g--~~l~V~~As 172 (172)
T 2g4b_A 156 LNGMQLGD--KKLLVQRAS 172 (172)
T ss_dssp HTTCEETT--EECEEEECC
T ss_pred cCCCEECC--eEEEEEeCC
Confidence 99999999 779999973
No 12
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=1.5e-33 Score=230.39 Aligned_cols=156 Identities=19% Similarity=0.330 Sum_probs=135.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceeccccc
Q psy4086 55 QLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQE 134 (305)
Q Consensus 55 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~~~ 134 (305)
....++|||+|||+++|+++|+++|+.||.+.. .++.+..+++++|||||+|.+.++|++|++ |||..|.++.++...
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 87 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEec
Confidence 445688999999999999999999999998766 445555678999999999999999999995 998888777665322
Q ss_pred ---------CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCC
Q psy4086 135 ---------QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPG 205 (305)
Q Consensus 135 ---------~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 205 (305)
...++|||+|||.++++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|++.|||..|.|
T Consensus 88 ~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 163 (175)
T 1fje_B 88 PKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG 163 (175)
T ss_dssp CCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETT
T ss_pred CCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 234789999999999999999999999987765 4577899999999999999999999999999999
Q ss_pred CCccEEEEeccCC
Q psy4086 206 SKEPLLVKFADSG 218 (305)
Q Consensus 206 ~~~~l~v~~a~~~ 218 (305)
+.|+|+|+.++
T Consensus 164 --~~i~v~~a~~k 174 (175)
T 1fje_B 164 --RSVSLYYTGEK 174 (175)
T ss_dssp --EEEEEEECSSC
T ss_pred --eEEEEEecCCC
Confidence 77999999864
No 13
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=3.7e-32 Score=226.27 Aligned_cols=154 Identities=23% Similarity=0.414 Sum_probs=135.9
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcc----C-------CeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCccc
Q psy4086 58 KTNLYIRGLTQDTTDKDLINMCSQY----G-------PIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIH 126 (305)
Q Consensus 58 ~~~l~V~~Lp~~~t~~~L~~~f~~~----G-------~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~ 126 (305)
.++|||+|||+++|+++|+++|++| | .|.++.+ ++++|||||+|.+.++|++|+ .|||..|.
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 5789999999999999999999999 4 5555554 456899999999999999999 79888777
Q ss_pred ceeccccc---------------------------CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcc
Q psy4086 127 AQMARQQE---------------------------QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSK 178 (305)
Q Consensus 127 ~~~~~~~~---------------------------~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~ 178 (305)
++.++... ...++|||+|||.++++++|+++|++||.|.++++..++ ++.++
T Consensus 77 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~ 156 (198)
T 2yh0_A 77 GQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSK 156 (198)
T ss_dssp TEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEE
T ss_pred CceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcc
Confidence 76554111 345789999999999999999999999999999999997 88999
Q ss_pred cEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEeccCCCc
Q psy4086 179 GVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLK 220 (305)
Q Consensus 179 g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~~~~~ 220 (305)
|||||+|.+.++|.+|++.|||..|.| +.|+|.++.++.+
T Consensus 157 g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 157 GYAFCEYVDINVTDQAIAGLNGMQLGD--KKLLVQRASVGAK 196 (198)
T ss_dssp EEEEEEESSSSHHHHHHHHHTTCEETT--EECEEEESCCCCC
T ss_pred eEEEEEECCHHHHHHHHHHcCCCEECC--EEEEEEECCCCCC
Confidence 999999999999999999999999999 7799999987543
No 14
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.98 E-value=1.7e-31 Score=232.34 Aligned_cols=162 Identities=19% Similarity=0.279 Sum_probs=142.4
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceeccccc
Q psy4086 55 QLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQE 134 (305)
Q Consensus 55 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~~~ 134 (305)
....++|||+|||+++|+++|+++|+.||.|.+|.|.+ ++|||||+|.+.++|.+|++.|||..|.++.++...
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 34567899999999999999999999999999999864 468999999999999999999999999888777443
Q ss_pred -CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCC-CCCC-CCCccEE
Q psy4086 135 -QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNG-STLP-GSKEPLL 211 (305)
Q Consensus 135 -~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g-~~~~-g~~~~l~ 211 (305)
...++|||+|||..+|+++|+++|+.||.|.+|.|+.+.+|.++|||||+|.+.++|.+|++.||+ ..+. +..++|.
T Consensus 93 a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~ 172 (261)
T 3sde_A 93 ATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVI 172 (261)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCE
T ss_pred cccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEE
Confidence 346789999999999999999999999999999999999999999999999999999999999954 4433 2228899
Q ss_pred EEeccCCCcCC
Q psy4086 212 VKFADSGLKKR 222 (305)
Q Consensus 212 v~~a~~~~~~~ 222 (305)
|.++.......
T Consensus 173 v~~~~~~~~~~ 183 (261)
T 3sde_A 173 VEPMEQFDDED 183 (261)
T ss_dssp EEECCCEESSS
T ss_pred EeeccccCccC
Confidence 99998765443
No 15
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.98 E-value=2.4e-31 Score=226.95 Aligned_cols=152 Identities=20% Similarity=0.320 Sum_probs=133.8
Q ss_pred CCCCeEEEcCCCC-CCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceeccc--
Q psy4086 56 LSKTNLYIRGLTQ-DTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQ-- 132 (305)
Q Consensus 56 ~~~~~l~V~~Lp~-~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~-- 132 (305)
...++|||+|||+ ++++++|+++|++||.|.+|+|++++ +|||||+|.+.++|++|++.|||..|.++.++.
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 3457899999999 99999999999999999999999875 789999999999999999999887776554441
Q ss_pred ---c-------------------------------------cCCCCceEEecCCCCCCHHHHHHHHhhCC-CeEEEEEee
Q psy4086 133 ---Q-------------------------------------EQDPTNLYIANLPLNFKECDLESLLAKYV-TVVSTRILR 171 (305)
Q Consensus 133 ---~-------------------------------------~~~~~~l~V~nlp~~~te~~l~~~F~~~g-~v~~v~i~~ 171 (305)
. ....++|||+|||..+++++|+++|++|| .|.+|+++.
T Consensus 107 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~ 186 (229)
T 2adc_A 107 SKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ 186 (229)
T ss_dssp CSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS
T ss_pred ecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE
Confidence 1 01247799999999999999999999999 999999975
Q ss_pred CCCCCcccEEEEEecCHHHHHHHHHHhCCCCCC-CCCccEEEEeccCC
Q psy4086 172 DNNNTSKGVGFARLESKDKCDQMIQLFNGSTLP-GSKEPLLVKFADSG 218 (305)
Q Consensus 172 ~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~-g~~~~l~v~~a~~~ 218 (305)
+ .+|||||+|.+.++|.+|++.|||..+. | +.|+|.|++++
T Consensus 187 ~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g--~~l~v~~a~~~ 228 (229)
T 2adc_A 187 K----DRKMALIQMGSVEEAVQALIDLHNHDLGEN--HHLRVSFSKST 228 (229)
T ss_dssp S----STTCEEEEESSHHHHHHHHHHHTTCBSSSS--CBCEEEECSSC
T ss_pred C----CCcEEEEEECCHHHHHHHHHHHCCCccCCC--CeEEEEEecCC
Confidence 3 4789999999999999999999999998 7 77999998763
No 16
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.98 E-value=1.8e-31 Score=234.56 Aligned_cols=153 Identities=20% Similarity=0.340 Sum_probs=134.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHH----HHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceec
Q psy4086 55 QLSKTNLYIRGLTQDTTDKDLI----NMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMA 130 (305)
Q Consensus 55 ~~~~~~l~V~~Lp~~~t~~~L~----~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~ 130 (305)
....++|||+|||+++|+++|+ ++|++||.|.+|+|++ +++++|||||+|.+.++|++|++.|||..|.++.+
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 3456789999999999999976 8999999999999886 67899999999999999999999999877766544
Q ss_pred c-----ccc-----------------------------------------------------------------------
Q psy4086 131 R-----QQE----------------------------------------------------------------------- 134 (305)
Q Consensus 131 ~-----~~~----------------------------------------------------------------------- 134 (305)
+ ...
T Consensus 83 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 162 (282)
T 3pgw_A 83 RIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPP 162 (282)
T ss_pred EEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCC
Confidence 3 111
Q ss_pred ------------------------------------------CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeC
Q psy4086 135 ------------------------------------------QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRD 172 (305)
Q Consensus 135 ------------------------------------------~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~ 172 (305)
...++|||+|||.++++++|+++|++||.|++|+|+.+
T Consensus 163 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~ 242 (282)
T 3pgw_A 163 YMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPG 242 (282)
T ss_pred CCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecC
Confidence 12366999999999999999999999999999999976
Q ss_pred CCCCcccEEEEEecCHHHHHHHHHHhCCCCCC-CCCccEEEEecc
Q psy4086 173 NNNTSKGVGFARLESKDKCDQMIQLFNGSTLP-GSKEPLLVKFAD 216 (305)
Q Consensus 173 ~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~-g~~~~l~v~~a~ 216 (305)
+ +|||||+|.+.++|.+|++.|||..|. | +.|+|.|++
T Consensus 243 ~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g--~~l~v~~ak 281 (282)
T 3pgw_A 243 R----HDIAFVEFDNEVQAGAARDALQGFKITQN--NAMKISFAK 281 (282)
T ss_pred C----CcEEEEEeCCHHHHHHHHHHcCCcEeCCC--CEEEEEEec
Confidence 3 589999999999999999999999999 8 779999986
No 17
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.98 E-value=8.7e-32 Score=237.71 Aligned_cols=163 Identities=18% Similarity=0.273 Sum_probs=141.2
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecccc
Q psy4086 54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQ 133 (305)
Q Consensus 54 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~~ 133 (305)
.+...++|||+|||+++|+++|+++|+.||+|.+|+|++++.+ ++|||||+|.+.++|++|++ +||..+.++.+...
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~ 113 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVS 113 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEE
Confidence 4456788999999999999999999999999999999998743 58999999999999999995 99999999999888
Q ss_pred cCCCCceEEecCCCCCCHHHHHHHHhhCC-CeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEE
Q psy4086 134 EQDPTNLYIANLPLNFKECDLESLLAKYV-TVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLV 212 (305)
Q Consensus 134 ~~~~~~l~V~nlp~~~te~~l~~~F~~~g-~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v 212 (305)
....++|||+|||.++++++|+++|+.|| .|..|+++.++.+.++|||||+|.+.++|.+|++.|||..|.| +.|.|
T Consensus 114 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v 191 (292)
T 2ghp_A 114 HLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEG--YTLVT 191 (292)
T ss_dssp ECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETT--EECEE
T ss_pred ECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCC--cEEEE
Confidence 88899999999999999999999999999 9999999998888899999999999999999999999999999 78999
Q ss_pred EeccCCCcC
Q psy4086 213 KFADSGLKK 221 (305)
Q Consensus 213 ~~a~~~~~~ 221 (305)
.++.+....
T Consensus 192 ~~a~~~~~~ 200 (292)
T 2ghp_A 192 KVSNPLEKS 200 (292)
T ss_dssp EECCCC---
T ss_pred EECCCCccc
Confidence 999875443
No 18
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=5.6e-31 Score=231.61 Aligned_cols=155 Identities=25% Similarity=0.392 Sum_probs=142.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceeccccc-C
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQE-Q 135 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~~~-~ 135 (305)
.+++|||+|||+++|+++|+++|+.|| |.+|.+ ++++|||||+|.+.++|++|++.|||..+.++.+.... .
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 93 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP 93 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC
Confidence 457899999999999999999999999 999987 45788999999999999999999999999888877443 3
Q ss_pred CCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q psy4086 136 DPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKF 214 (305)
Q Consensus 136 ~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~ 214 (305)
..++|||+|||.++++++|+++|+.||.|..++++.++ +|.++|||||+|.+.++|.+|++.|+|..+.| +.|.|.+
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g--~~i~v~~ 171 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGP--RTLYVHW 171 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT--EECEEEE
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCC--cEEEEEE
Confidence 45789999999999999999999999999999999987 89999999999999999999999999999999 7899999
Q ss_pred ccCCCc
Q psy4086 215 ADSGLK 220 (305)
Q Consensus 215 a~~~~~ 220 (305)
+.....
T Consensus 172 a~~~~~ 177 (284)
T 3smz_A 172 TDAGQL 177 (284)
T ss_dssp CCGGGC
T ss_pred CCCCCC
Confidence 987543
No 19
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=2.6e-31 Score=221.46 Aligned_cols=151 Identities=20% Similarity=0.318 Sum_probs=133.1
Q ss_pred CCCeEEEcCCCC-CCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecccc--
Q psy4086 57 SKTNLYIRGLTQ-DTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQ-- 133 (305)
Q Consensus 57 ~~~~l~V~~Lp~-~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~~-- 133 (305)
++++|||+|||+ ++++++|+++|++||.|.+|++++++ +|||||+|.+.++|++|++.|||..+.++.++..
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 357899999999 99999999999999999999998875 7899999999999999999998877665544411
Q ss_pred ----------------------------------------cCCCCceEEecCCCCCCHHHHHHHHhhCC-CeEEEEEeeC
Q psy4086 134 ----------------------------------------EQDPTNLYIANLPLNFKECDLESLLAKYV-TVVSTRILRD 172 (305)
Q Consensus 134 ----------------------------------------~~~~~~l~V~nlp~~~te~~l~~~F~~~g-~v~~v~i~~~ 172 (305)
....++|||+|||..+++++|+++|++|| .|.+++++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~ 156 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 156 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC
Confidence 01256799999999999999999999999 9999999764
Q ss_pred CCCCcccEEEEEecCHHHHHHHHHHhCCCCCC-CCCccEEEEeccCC
Q psy4086 173 NNNTSKGVGFARLESKDKCDQMIQLFNGSTLP-GSKEPLLVKFADSG 218 (305)
Q Consensus 173 ~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~-g~~~~l~v~~a~~~ 218 (305)
.+|||||+|.+.++|.+|++.|||..+. | ++|+|.|++++
T Consensus 157 ----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g--~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 ----DRKMALIQMGSVEEAVQALIDLHNHDLGEN--HHLRVSFSKST 197 (198)
T ss_dssp ----TSSCEEEECSSHHHHHHHHHHHTSSCCSSC--CSCCEEEECCC
T ss_pred ----CCcEEEEEeCCHHHHHHHHHHhcCCccCCC--CeEEEEeeccc
Confidence 3789999999999999999999999998 7 77999998763
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=3.6e-31 Score=233.79 Aligned_cols=158 Identities=17% Similarity=0.252 Sum_probs=137.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccC-CeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecccc--
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYG-PIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQ-- 133 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G-~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~~-- 133 (305)
..++|||+|||+++++++|+++|+.|| .|..|.++.++. +.++|||||+|.+.++|.+|++.|||..|.++.+...
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 467899999999999999999999999 999999999885 8899999999999999999999999888877665521
Q ss_pred ------------cCCCCceEEecCCCC-CCHHHHHHHHhhCCCeEEEEEeeCCC--CCcccEEEEEecCHHHHHHHHHHh
Q psy4086 134 ------------EQDPTNLYIANLPLN-FKECDLESLLAKYVTVVSTRILRDNN--NTSKGVGFARLESKDKCDQMIQLF 198 (305)
Q Consensus 134 ------------~~~~~~l~V~nlp~~-~te~~l~~~F~~~g~v~~v~i~~~~~--g~~~g~afV~f~~~~~A~~Ai~~l 198 (305)
....++|||+|||.. +++++|+++|+.||.|..|+|+.+.. |.++|||||+|.+.++|.+|+ .|
T Consensus 195 ~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l 273 (292)
T 2ghp_A 195 NPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QM 273 (292)
T ss_dssp CCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GG
T ss_pred CCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-Hh
Confidence 123478999999999 99999999999999999999999886 899999999999999999999 99
Q ss_pred CCCCCCCCCccEEEEeccCC
Q psy4086 199 NGSTLPGSKEPLLVKFADSG 218 (305)
Q Consensus 199 ~g~~~~g~~~~l~v~~a~~~ 218 (305)
||..|.| +.|.|.|+.++
T Consensus 274 ~g~~~~g--~~i~V~~a~~k 291 (292)
T 2ghp_A 274 NRSLLGN--REISVSLADKK 291 (292)
T ss_dssp TTEEETT--EEEEEEECCCC
T ss_pred cCCEECC--cEEEEEEecCC
Confidence 9999999 78999999875
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.93 E-value=5.4e-25 Score=176.77 Aligned_cols=132 Identities=22% Similarity=0.295 Sum_probs=110.4
Q ss_pred EEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcc-cceec-------------------ccccCCCCceEEecCC
Q psy4086 87 STKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGI-HAQMA-------------------RQQEQDPTNLYIANLP 146 (305)
Q Consensus 87 ~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i-~~~~~-------------------~~~~~~~~~l~V~nlp 146 (305)
.++|+.+.. +++|||||+|.+.++|++|++.+++... ...+. .......++|||+|||
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 467777764 6899999999999999999998774321 11110 0122335789999999
Q ss_pred CCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEeccCCCcCC
Q psy4086 147 LNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKR 222 (305)
Q Consensus 147 ~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~~~~~~~ 222 (305)
+++++++|+++|+.||.|.+|+|+.++ +|.++|||||+|.+.++|++||+.|||..|.| ++|+|.+++....+.
T Consensus 80 ~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~a~~~~~~~ 154 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG--RELRVQMARYGRPPD 154 (158)
T ss_dssp TTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSS--SEEEEEEECCSSCCC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC--eEEEEEECCCCCCCC
Confidence 999999999999999999999999997 89999999999999999999999999999999 779999998765443
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.88 E-value=9.4e-23 Score=154.88 Aligned_cols=94 Identities=28% Similarity=0.467 Sum_probs=66.6
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecccc----
Q psy4086 58 KTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQ---- 133 (305)
Q Consensus 58 ~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~~---- 133 (305)
.++|||+|||+++|+++|+++|++||.|.+|+|++++ +.++|||||+|.+.++|++|++.|||..|.++.++..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4679999999999999999999999999999999986 4589999999999999999999999988877765521
Q ss_pred -----------cCCCCceEEecCCCCCCHHH
Q psy4086 134 -----------EQDPTNLYIANLPLNFKECD 153 (305)
Q Consensus 134 -----------~~~~~~l~V~nlp~~~te~~ 153 (305)
.....+|||+|||+++|++.
T Consensus 83 ~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 83 RKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCC----------------------------
T ss_pred ccccccccccccCCCCceEeCCCCCCccccc
Confidence 11235799999999999864
No 23
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.87 E-value=4.3e-22 Score=158.42 Aligned_cols=116 Identities=19% Similarity=0.270 Sum_probs=101.7
Q ss_pred CCccceEEEEecchhhHHHHHHHh-ccCcccceecc-----------------------cccCCCCceEEecCCCCCCHH
Q psy4086 97 NKCRGYGFVDFESGGYALAAVKAL-QDKGIHAQMAR-----------------------QQEQDPTNLYIANLPLNFKEC 152 (305)
Q Consensus 97 g~~~G~afV~f~~~~~A~~a~~~l-~g~~i~~~~~~-----------------------~~~~~~~~l~V~nlp~~~te~ 152 (305)
...+|+++|+|.+.++|++|++.+ ||..+.+ .+. ......++|||+|||++++++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 467899999999999999999999 8877766 332 111234789999999999999
Q ss_pred HHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEeccCCC
Q psy4086 153 DLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGL 219 (305)
Q Consensus 153 ~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~~~~ 219 (305)
+|+++|++||.|.+|+|+.+ ++|||||+|.+.++|.+|++.|||..|.| ++|+|+|+.++.
T Consensus 89 ~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~a~~~~ 149 (150)
T 2i2y_A 89 ELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCG--CRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSS--SCCEEEECCCCC
T ss_pred HHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECC--eEEEEEEcCCCC
Confidence 99999999999999999876 58999999999999999999999999999 779999998753
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.86 E-value=1.8e-21 Score=143.67 Aligned_cols=80 Identities=29% Similarity=0.476 Sum_probs=76.1
Q ss_pred CCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q psy4086 136 DPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKF 214 (305)
Q Consensus 136 ~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~ 214 (305)
..++|||+|||.++|+++|+++|++||.|.+|+|++++ +|.++|||||+|.+.++|++|++.|||..|.| ++|+|+|
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g--r~l~V~~ 95 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS--KTIKVSY 95 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETT--EECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECC--EEEEEEE
Confidence 45789999999999999999999999999999999998 79999999999999999999999999999999 7899999
Q ss_pred ccC
Q psy4086 215 ADS 217 (305)
Q Consensus 215 a~~ 217 (305)
|++
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 864
No 25
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.85 E-value=1.3e-21 Score=152.70 Aligned_cols=119 Identities=19% Similarity=0.223 Sum_probs=80.5
Q ss_pred eEEEEecchhhHHHHHHHhccCcccceecc------cccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-C
Q psy4086 102 YGFVDFESGGYALAAVKALQDKGIHAQMAR------QQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-N 174 (305)
Q Consensus 102 ~afV~f~~~~~A~~a~~~l~g~~i~~~~~~------~~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~ 174 (305)
++|++|.+...+..|++.++|....++... ......++|||+|||+++++++|+++|++||.|..|+|+.++ +
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~ 85 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGSMSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYT 85 (135)
T ss_dssp -----------------------------CCSCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSS
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCCCCcCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCC
Confidence 688999999999999999887654443222 333446789999999999999999999999999999999987 8
Q ss_pred CCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEeccCCCcCC
Q psy4086 175 NTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKR 222 (305)
Q Consensus 175 g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~~~~~~~ 222 (305)
+.++|||||+|.+.++|++||+.|||..|.| +.|+|++++......
T Consensus 86 g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g--~~l~V~~a~~~~~~~ 131 (135)
T 2lea_A 86 KESRGFAFVRFHDKRDAEDAMDAMDGAVLDG--RELRVQMARYGRPPD 131 (135)
T ss_dssp SSCCSCCEEECSCHHHHHHHHTTTTTCCSSS--SCCEEEECCCCCCCT
T ss_pred CccceEEEEEECCHHHHHHHHHHcCCCEECC--EEEEEEECCCCCCCc
Confidence 8999999999999999999999999999999 779999998765443
No 26
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.85 E-value=2.1e-21 Score=179.78 Aligned_cols=145 Identities=17% Similarity=0.253 Sum_probs=106.5
Q ss_pred HHHHHhccCCeeEEEEee----CC-CCCCccceE--EEEecchhhHHHHHHHhccCccc------------------cee
Q psy4086 75 LINMCSQYGPIISTKAIL----DK-TTNKCRGYG--FVDFESGGYALAAVKALQDKGIH------------------AQM 129 (305)
Q Consensus 75 L~~~f~~~G~i~~~~i~~----~~-~~g~~~G~a--fV~f~~~~~A~~a~~~l~g~~i~------------------~~~ 129 (305)
|.+||..+++|..|..+. ++ .+....|++ |++|.+..++..++..++..... ...
T Consensus 9 L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~~ 88 (437)
T 3pgw_S 9 LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELKM 88 (437)
T ss_pred HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 788999999998874332 22 112222333 78887765554433222111100 000
Q ss_pred ------cccccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCC
Q psy4086 130 ------ARQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGST 202 (305)
Q Consensus 130 ------~~~~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 202 (305)
........++|||+|||+.+|+++|+++|++||.|+.|.|+.++ ++.++|||||+|.+.++|++||+.|||..
T Consensus 89 ~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~ 168 (437)
T 3pgw_S 89 WDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKK 168 (437)
T ss_pred cCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCE
Confidence 00122334789999999999999999999999999999999997 88999999999999999999999999999
Q ss_pred CCCCCccEEEEeccCCCcC
Q psy4086 203 LPGSKEPLLVKFADSGLKK 221 (305)
Q Consensus 203 ~~g~~~~l~v~~a~~~~~~ 221 (305)
|.| +.|.|.|+.....+
T Consensus 169 i~g--r~i~V~~a~~~~~~ 185 (437)
T 3pgw_S 169 IDG--RRVLVDVERGRTVK 185 (437)
T ss_pred ECC--EEEEEEEeCCCCCC
Confidence 999 77999999875543
No 27
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=4.5e-20 Score=134.99 Aligned_cols=86 Identities=22% Similarity=0.439 Sum_probs=79.6
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEE
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVK 213 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~ 213 (305)
...++|||+|||.++++++|+++|++||.|.+|+|+.++ ++.++|||||+|.+.++|++|++.|||..|.| +.|+|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~V~ 80 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAG--RPMRVG 80 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSS--SCCEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCC--cEEEEE
Confidence 356899999999999999999999999999999999998 78999999999999999999999999999999 779999
Q ss_pred eccCCCcCC
Q psy4086 214 FADSGLKKR 222 (305)
Q Consensus 214 ~a~~~~~~~ 222 (305)
++..+....
T Consensus 81 ~a~~~~~~~ 89 (95)
T 2dnz_A 81 HVTERLDGG 89 (95)
T ss_dssp ESSCCCCCC
T ss_pred EcccccCCC
Confidence 998865543
No 28
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.84 E-value=4.6e-20 Score=140.15 Aligned_cols=87 Identities=21% Similarity=0.348 Sum_probs=80.7
Q ss_pred cCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEE
Q psy4086 134 EQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVK 213 (305)
Q Consensus 134 ~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~ 213 (305)
....++|||+|||.++++++|+++|++||.|++|.|+.++++.++|||||+|.+.++|++|++.|||..|.| +.|+|+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g--~~l~V~ 81 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHG--KAIKVE 81 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSS--SBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC--EEEEEE
Confidence 345689999999999999999999999999999999999888999999999999999999999999999999 779999
Q ss_pred eccCCCcCC
Q psy4086 214 FADSGLKKR 222 (305)
Q Consensus 214 ~a~~~~~~~ 222 (305)
+++......
T Consensus 82 ~a~~~~~~~ 90 (116)
T 2fy1_A 82 QAKKPSFQS 90 (116)
T ss_dssp ECCCSSCSS
T ss_pred ECCCCCCCC
Confidence 999866554
No 29
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.83 E-value=1.4e-20 Score=138.79 Aligned_cols=76 Identities=29% Similarity=0.434 Sum_probs=71.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceeccc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQ 132 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~ 132 (305)
+.++|||+|||+++|+++|+++|++||+|.+|+|++|+.+|+++|||||+|.+.++|++|++.|||..|.++.++.
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V 93 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKV 93 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 4578999999999999999999999999999999999999999999999999999999999999999988876653
No 30
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.83 E-value=1.2e-20 Score=141.83 Aligned_cols=85 Identities=16% Similarity=0.198 Sum_probs=79.2
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEE
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVK 213 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~ 213 (305)
...++|||+||++++++++|+++|++||.|++|+|+.|+ +++++|||||+|.+.++|++||+.|||..|.| +.|+|.
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~g--r~i~V~ 81 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMG--NIIHAQ 81 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT--EECEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECC--eEEEEE
Confidence 456899999999999999999999999999999999998 79999999999999999999999999999999 779999
Q ss_pred eccCCCcC
Q psy4086 214 FADSGLKK 221 (305)
Q Consensus 214 ~a~~~~~~ 221 (305)
++.....+
T Consensus 82 ~a~~~~~~ 89 (110)
T 3s8s_A 82 LDIKGQQR 89 (110)
T ss_dssp ECSTTHHH
T ss_pred ECCCCcHH
Confidence 99765443
No 31
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=6e-20 Score=136.93 Aligned_cols=88 Identities=24% Similarity=0.344 Sum_probs=81.4
Q ss_pred cCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEE
Q psy4086 134 EQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLV 212 (305)
Q Consensus 134 ~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v 212 (305)
....++|||+|||+++++++|+++|++||.|..|+|+.++ ++.++|||||+|.+.++|++|++.||+..|.| +.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v 89 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYG--KPIRV 89 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSS--CBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECC--eEEEE
Confidence 3456899999999999999999999999999999999998 88999999999999999999999999999999 77999
Q ss_pred EeccCCCcCCC
Q psy4086 213 KFADSGLKKRG 223 (305)
Q Consensus 213 ~~a~~~~~~~~ 223 (305)
.++..+..+..
T Consensus 90 ~~a~~~~~~~~ 100 (105)
T 1x5u_A 90 NKASAHNKNLS 100 (105)
T ss_dssp EETTTTSCCCC
T ss_pred EECCCCCcCCC
Confidence 99998766553
No 32
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5.9e-20 Score=136.23 Aligned_cols=87 Identities=24% Similarity=0.487 Sum_probs=80.4
Q ss_pred cCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEE
Q psy4086 134 EQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLV 212 (305)
Q Consensus 134 ~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v 212 (305)
..+.++|||+|||.++++++|+++|++||.|..|+|+.++ ++.+++||||+|.+.++|++|++.||+..|.+ +.|+|
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v 86 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG--RQIRV 86 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTS--CCCEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC--eEEEE
Confidence 3456899999999999999999999999999999999987 78899999999999999999999999999999 77999
Q ss_pred EeccCCCcCC
Q psy4086 213 KFADSGLKKR 222 (305)
Q Consensus 213 ~~a~~~~~~~ 222 (305)
.++..+...+
T Consensus 87 ~~a~~~~~~~ 96 (102)
T 1x5s_A 87 DQAGKSSDNR 96 (102)
T ss_dssp EEEECCCCCC
T ss_pred EECCCCCCCC
Confidence 9999876655
No 33
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=9.8e-20 Score=134.30 Aligned_cols=86 Identities=21% Similarity=0.404 Sum_probs=79.4
Q ss_pred cCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEE
Q psy4086 134 EQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLV 212 (305)
Q Consensus 134 ~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v 212 (305)
....++|||+|||.++++++|+++|++||.|.+|+|+.++ ++.++|||||+|.+.++|++|++ ||+..|.| +.|+|
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g--~~l~V 83 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMG--KKVEV 83 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSS--CBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECC--eEEEE
Confidence 3456899999999999999999999999999999999997 78999999999999999999998 99999999 77999
Q ss_pred EeccCCCcCC
Q psy4086 213 KFADSGLKKR 222 (305)
Q Consensus 213 ~~a~~~~~~~ 222 (305)
+++..+..+.
T Consensus 84 ~~a~~~~~~~ 93 (99)
T 2dgs_A 84 KRAEPRDSKS 93 (99)
T ss_dssp EECCCCCCCC
T ss_pred EECCCCcccC
Confidence 9999866654
No 34
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.82 E-value=6.7e-20 Score=143.74 Aligned_cols=88 Identities=27% Similarity=0.453 Sum_probs=81.1
Q ss_pred ccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEE
Q psy4086 133 QEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLL 211 (305)
Q Consensus 133 ~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~ 211 (305)
.....++|||+|||.++++++|+++|+.||.|++|+|+.++ ++.++|||||+|.+.++|++||+.|||..|.| +.|+
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~ 115 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILN--KRLK 115 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSS--CEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC--eEEE
Confidence 34456899999999999999999999999999999999998 78899999999999999999999999999999 7799
Q ss_pred EEeccCCCcCC
Q psy4086 212 VKFADSGLKKR 222 (305)
Q Consensus 212 v~~a~~~~~~~ 222 (305)
|++++.+..+.
T Consensus 116 v~~a~~~~~~~ 126 (139)
T 1u6f_A 116 VALAASGHQRP 126 (139)
T ss_dssp EEESSCCCCCC
T ss_pred EEECCCCCCCC
Confidence 99999876654
No 35
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=9.9e-20 Score=134.24 Aligned_cols=86 Identities=20% Similarity=0.264 Sum_probs=80.4
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEE
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVK 213 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~ 213 (305)
.+.++|||+|||+++++++|+++|++||.|.+|+|+.++ ++.++|||||+|.+.++|++|++.|||..|.+ +.|+|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~V~ 83 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQG--RMLHVL 83 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSS--CEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECC--cEEEEE
Confidence 456889999999999999999999999999999999998 88999999999999999999999999999999 779999
Q ss_pred eccCCCcCC
Q psy4086 214 FADSGLKKR 222 (305)
Q Consensus 214 ~a~~~~~~~ 222 (305)
++..+..+.
T Consensus 84 ~a~~~~~~~ 92 (99)
T 1whw_A 84 PSTIKKEAS 92 (99)
T ss_dssp ECCCCSTTC
T ss_pred EcCCCcccc
Confidence 999876654
No 36
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.82 E-value=6.3e-20 Score=146.83 Aligned_cols=87 Identities=18% Similarity=0.271 Sum_probs=80.6
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEE
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVK 213 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~ 213 (305)
...++|||+|||.++++++|+++|++||.|+.|+|+.++ ++.+++||||+|.+.++|++||+.||+..|.+ +.|+|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~V~ 114 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDD--RIIRTD 114 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETT--EECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC--eEEEEE
Confidence 456899999999999999999999999999999999998 78899999999999999999999999999999 779999
Q ss_pred eccCCCcCCC
Q psy4086 214 FADSGLKKRG 223 (305)
Q Consensus 214 ~a~~~~~~~~ 223 (305)
|+......+.
T Consensus 115 ~a~~~~~~~~ 124 (156)
T 1h2v_Z 115 WDAGFKEGRQ 124 (156)
T ss_dssp EESCCCTTCC
T ss_pred ECCCCCCcCC
Confidence 9998666554
No 37
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.82 E-value=4.6e-21 Score=162.83 Aligned_cols=81 Identities=20% Similarity=0.329 Sum_probs=75.7
Q ss_pred CCCceEEecCCCCCCHHHHHHHHhhCC--CeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEE
Q psy4086 136 DPTNLYIANLPLNFKECDLESLLAKYV--TVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLV 212 (305)
Q Consensus 136 ~~~~l~V~nlp~~~te~~l~~~F~~~g--~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v 212 (305)
..++|||+||++++|+++|+++|++|| .|++|+|++++ +++++|||||+|.+.++|++||+.||+..|.+ +.|+|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~G--r~l~V 144 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHG--QNPVV 144 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTT--BCCEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECC--EEeEE
Confidence 567899999999999999999999999 99999999998 89999999999999999999999999999999 77999
Q ss_pred EeccCC
Q psy4086 213 KFADSG 218 (305)
Q Consensus 213 ~~a~~~ 218 (305)
+++...
T Consensus 145 ~~a~~~ 150 (229)
T 3q2s_C 145 TPVNKQ 150 (229)
T ss_dssp EECCHH
T ss_pred EECCCC
Confidence 998754
No 38
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-20 Score=137.22 Aligned_cols=83 Identities=16% Similarity=0.286 Sum_probs=75.3
Q ss_pred CCceEEecCCCCCCHHHHHHHHhhCC-CeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhC-CCCCCCCCccEEEE
Q psy4086 137 PTNLYIANLPLNFKECDLESLLAKYV-TVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFN-GSTLPGSKEPLLVK 213 (305)
Q Consensus 137 ~~~l~V~nlp~~~te~~l~~~F~~~g-~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~-g~~~~g~~~~l~v~ 213 (305)
+++|||+|||.++||++|+++|++|| .|.+|+|++++ ++.++|||||+|.+.++|++|++.++ +..+.| ++|+|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g--r~i~V~ 78 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILG--QKVSMH 78 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETT--EEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECC--EEEEEE
Confidence 36899999999999999999999999 79999999998 79999999999999999999999874 567999 789999
Q ss_pred eccCCCcC
Q psy4086 214 FADSGLKK 221 (305)
Q Consensus 214 ~a~~~~~~ 221 (305)
|+.++...
T Consensus 79 ~a~~~~~~ 86 (91)
T 2lxi_A 79 YSDPKPKI 86 (91)
T ss_dssp CCCSCCCC
T ss_pred EcCCCCCC
Confidence 99875443
No 39
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.2e-19 Score=134.73 Aligned_cols=87 Identities=23% Similarity=0.440 Sum_probs=80.5
Q ss_pred cCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEE
Q psy4086 134 EQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVK 213 (305)
Q Consensus 134 ~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~ 213 (305)
....++|||+|||+++++++|+++|++||.|..|+|+.+ ++.+++||||+|.+.++|++|++.||+..|.+ +.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~V~ 88 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT--KPLYVA 88 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSS--SBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCC--cEEEEE
Confidence 446789999999999999999999999999999999999 88999999999999999999999999999999 779999
Q ss_pred eccCCCcCCC
Q psy4086 214 FADSGLKKRG 223 (305)
Q Consensus 214 ~a~~~~~~~~ 223 (305)
++..+..+..
T Consensus 89 ~a~~~~~~~~ 98 (103)
T 2d9p_A 89 LAQRKEERQS 98 (103)
T ss_dssp ECSSCCCCCC
T ss_pred EecccccCCC
Confidence 9998766553
No 40
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.82 E-value=1.1e-19 Score=135.81 Aligned_cols=87 Identities=23% Similarity=0.404 Sum_probs=79.4
Q ss_pred cCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCC---CCCCcc
Q psy4086 134 EQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTL---PGSKEP 209 (305)
Q Consensus 134 ~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~~~ 209 (305)
....++|||+|||.++++++|+++|++||.|.+|+|+.++ ++.++|||||+|.+.++|++|++.||+..+ .+ ++
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g--~~ 87 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN--RP 87 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS--SC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC--ce
Confidence 4456889999999999999999999999999999999998 789999999999999999999999999886 66 77
Q ss_pred EEEEeccCCCcCC
Q psy4086 210 LLVKFADSGLKKR 222 (305)
Q Consensus 210 l~v~~a~~~~~~~ 222 (305)
|+|++++.+..+.
T Consensus 88 l~v~~a~~~~~~~ 100 (106)
T 2dgp_A 88 IQVKPADSESRGG 100 (106)
T ss_dssp CEEEECCCCSCCC
T ss_pred EEEEECCcccccC
Confidence 9999999866554
No 41
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.2e-20 Score=134.54 Aligned_cols=86 Identities=28% Similarity=0.417 Sum_probs=79.7
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEE-EEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEE
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVST-RILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLV 212 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v-~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v 212 (305)
...++|||+|||.++++++|+++|++||.|.++ +|+.++ ++.++|||||+|.+.++|++|++.||+..|.| ++|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v 80 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN--RPITV 80 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETT--EECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC--EEEEE
Confidence 356899999999999999999999999999999 999996 88999999999999999999999999999999 77999
Q ss_pred EeccCCCcCC
Q psy4086 213 KFADSGLKKR 222 (305)
Q Consensus 213 ~~a~~~~~~~ 222 (305)
+++..+..+.
T Consensus 81 ~~a~~~~~~~ 90 (96)
T 1x5t_A 81 SYAFKKDSKG 90 (96)
T ss_dssp EESCCCCCCC
T ss_pred EEecccCCCC
Confidence 9998866554
No 42
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.81 E-value=1.1e-19 Score=137.77 Aligned_cols=86 Identities=28% Similarity=0.423 Sum_probs=80.2
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEE
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVK 213 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~ 213 (305)
...++|||+|||+++++++|+++|++||.|++|+|+.++ ++.+++||||+|.+.++|++||+.||+..|.+ +.|+|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~V~ 100 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGM--KRLKVQ 100 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT--EECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECC--EEEEEE
Confidence 456899999999999999999999999999999999998 89999999999999999999999999999999 779999
Q ss_pred eccCCCcCC
Q psy4086 214 FADSGLKKR 222 (305)
Q Consensus 214 ~a~~~~~~~ 222 (305)
|++.+..+.
T Consensus 101 ~a~~~~~~~ 109 (115)
T 2cpz_A 101 LKRSKNDSK 109 (115)
T ss_dssp CCCCSCCCC
T ss_pred EcCCCCcCC
Confidence 999876554
No 43
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.81 E-value=8.1e-20 Score=137.32 Aligned_cols=75 Identities=23% Similarity=0.312 Sum_probs=71.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
..++|||+|||+++++++|+++|++||+|.+|+|++|+.|++++|||||+|.+.++|++|++.|||+.|.++.++
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~ 79 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIH 79 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 357799999999999999999999999999999999999999999999999999999999999999999888765
No 44
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.81 E-value=2.4e-20 Score=136.29 Aligned_cols=81 Identities=21% Similarity=0.414 Sum_probs=74.5
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCC--eEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCC----CCCCC
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVT--VVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGST----LPGSK 207 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~--v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~----~~g~~ 207 (305)
..-.+|||+|||+++|+++|+++|++||. |.+|++++|+ +|++||||||+|.+.++|++|++.|||.. |+|
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G-- 84 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG-- 84 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT--
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC--
Confidence 44578999999999999999999999995 6799999998 89999999999999999999999999974 788
Q ss_pred ccEEEEeccC
Q psy4086 208 EPLLVKFADS 217 (305)
Q Consensus 208 ~~l~v~~a~~ 217 (305)
++|.|+||++
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 8899999875
No 45
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.7e-19 Score=134.16 Aligned_cols=87 Identities=17% Similarity=0.326 Sum_probs=80.1
Q ss_pred cCCCCceEEecCCCCCCHHHHHHHHhh-CCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCC-CCCCCccEE
Q psy4086 134 EQDPTNLYIANLPLNFKECDLESLLAK-YVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGST-LPGSKEPLL 211 (305)
Q Consensus 134 ~~~~~~l~V~nlp~~~te~~l~~~F~~-~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~-~~g~~~~l~ 211 (305)
....++|||+|||+++++++|+++|++ ||.|.+|+|+.++++.++|||||+|.+.++|++|++.||+.. |.| +.|+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g--~~l~ 83 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGS--KPVR 83 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSS--SCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCC--EeEE
Confidence 345689999999999999999999999 999999999999988999999999999999999999999999 999 7799
Q ss_pred EEeccCCCcCC
Q psy4086 212 VKFADSGLKKR 222 (305)
Q Consensus 212 v~~a~~~~~~~ 222 (305)
|.++..+..+.
T Consensus 84 v~~a~~~~~~~ 94 (104)
T 2dhg_A 84 LSVAIPKASRV 94 (104)
T ss_dssp CCBCCCCCSCC
T ss_pred EEEccCCCcCC
Confidence 99998765554
No 46
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=6.7e-20 Score=135.92 Aligned_cols=87 Identities=20% Similarity=0.282 Sum_probs=80.7
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEE
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVK 213 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~ 213 (305)
...++|||+|||+++++++|+++|++||.|++|+|+.++ ++.++|||||+|.+.++|++|++.||+..|.+ +.|+|.
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~V~ 87 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG--RTIRVN 87 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETT--EEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC--cEEEEE
Confidence 456899999999999999999999999999999999997 78999999999999999999999999999999 779999
Q ss_pred eccCCCcCCC
Q psy4086 214 FADSGLKKRG 223 (305)
Q Consensus 214 ~a~~~~~~~~ 223 (305)
++..+..+..
T Consensus 88 ~a~~~~~~~~ 97 (102)
T 2cqb_A 88 LAKPMRIKES 97 (102)
T ss_dssp ECCCCCCCCC
T ss_pred eCCCCCCCCC
Confidence 9998766653
No 47
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.81 E-value=8.8e-20 Score=140.63 Aligned_cols=88 Identities=18% Similarity=0.278 Sum_probs=80.7
Q ss_pred cCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEE
Q psy4086 134 EQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLV 212 (305)
Q Consensus 134 ~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v 212 (305)
....++|||+|||+++++++|+++|++||.|.+|.|+.++ ++.++|||||+|.+.++|++||+.|||..|.| +.|.|
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v 96 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG--QPISV 96 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSS--SBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC--eEEEE
Confidence 3446789999999999999999999999999999999998 88999999999999999999999999999999 77999
Q ss_pred EeccCCCcCCC
Q psy4086 213 KFADSGLKKRG 223 (305)
Q Consensus 213 ~~a~~~~~~~~ 223 (305)
+|+..+..++.
T Consensus 97 ~~a~~~~~~~~ 107 (126)
T 3ex7_B 97 DWCFVRGPPKG 107 (126)
T ss_dssp EESEESSSCCC
T ss_pred EEecCCCCCCC
Confidence 99987666553
No 48
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=135.02 Aligned_cols=87 Identities=22% Similarity=0.337 Sum_probs=80.0
Q ss_pred cCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEE
Q psy4086 134 EQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLV 212 (305)
Q Consensus 134 ~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v 212 (305)
....++|||+|||.++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|++.|||..|.| +.|+|
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~V 87 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDG--RELRV 87 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTT--BCCEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECC--cEEEE
Confidence 3456899999999999999999999999999999999998 68999999999999999999999999999999 77999
Q ss_pred EeccCCCcCC
Q psy4086 213 KFADSGLKKR 222 (305)
Q Consensus 213 ~~a~~~~~~~ 222 (305)
.+++......
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2dnm_A 88 QVARYGRRDL 97 (103)
T ss_dssp EECSSCCSCC
T ss_pred EECCcCCCCC
Confidence 9998765443
No 49
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.6e-19 Score=133.86 Aligned_cols=88 Identities=17% Similarity=0.454 Sum_probs=80.6
Q ss_pred ccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeC-C-CCCcccEEEEEecCHHHHHHHHHHh-CCCCCCCCCcc
Q psy4086 133 QEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRD-N-NNTSKGVGFARLESKDKCDQMIQLF-NGSTLPGSKEP 209 (305)
Q Consensus 133 ~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~-~-~g~~~g~afV~f~~~~~A~~Ai~~l-~g~~~~g~~~~ 209 (305)
.....++|||+|||.++++++|+++|++||.|..|+|+.+ + ++.++|||||+|.+.++|++||+.| |+..|.| +.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g--~~ 88 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYG--RR 88 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSS--CB
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECC--CE
Confidence 3456689999999999999999999999999999999998 4 8899999999999999999999999 9999999 77
Q ss_pred EEEEeccCCCcCC
Q psy4086 210 LLVKFADSGLKKR 222 (305)
Q Consensus 210 l~v~~a~~~~~~~ 222 (305)
|+|+|+..+....
T Consensus 89 l~v~~a~~~~~~~ 101 (107)
T 2cph_A 89 LVLEWADSEVTVQ 101 (107)
T ss_dssp CEEEECCCCCCCC
T ss_pred EEEEeCCCCCCCC
Confidence 9999999866554
No 50
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.81 E-value=3.3e-19 Score=132.89 Aligned_cols=88 Identities=24% Similarity=0.388 Sum_probs=80.1
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCC-CCccEEEE
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPG-SKEPLLVK 213 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-~~~~l~v~ 213 (305)
...++|||+|||.++++++|+++|++||.|.+|+|+.++++.++|||||+|.+.++|++||+.|||..+.+ ..++|+|+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 45689999999999999999999999999999999999988999999999999999999999999999876 22459999
Q ss_pred eccCCCcCC
Q psy4086 214 FADSGLKKR 222 (305)
Q Consensus 214 ~a~~~~~~~ 222 (305)
+++.+..++
T Consensus 93 ~a~~~~~~~ 101 (105)
T 2dnh_A 93 FADTDKESG 101 (105)
T ss_dssp ESCSSCCCS
T ss_pred ECccCcccC
Confidence 999876654
No 51
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.81 E-value=3.7e-19 Score=135.50 Aligned_cols=78 Identities=32% Similarity=0.491 Sum_probs=72.3
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 54 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
+....++|||+|||+++++++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|++|++.|||..|.++.++
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 344568899999999999999999999999999999999998999999999999999999999999999988887664
No 52
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2.3e-19 Score=132.59 Aligned_cols=85 Identities=21% Similarity=0.405 Sum_probs=79.2
Q ss_pred cCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEE
Q psy4086 134 EQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVK 213 (305)
Q Consensus 134 ~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~ 213 (305)
....++|||+|||.++++++|+++|++||.|.+|+|+.++++.++|||||+|.+.++|++|++.||+..|.| +.|+|.
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~ 91 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKE--NIIKVA 91 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSS--CEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECC--EEEEEE
Confidence 345689999999999999999999999999999999999988999999999999999999999999999999 779999
Q ss_pred eccCCCc
Q psy4086 214 FADSGLK 220 (305)
Q Consensus 214 ~a~~~~~ 220 (305)
+++++..
T Consensus 92 ~a~~~~~ 98 (100)
T 2do4_A 92 ISNSGPS 98 (100)
T ss_dssp ECCCCSC
T ss_pred ECCCCCC
Confidence 9987543
No 53
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.81 E-value=8.9e-20 Score=147.32 Aligned_cols=116 Identities=17% Similarity=0.260 Sum_probs=77.9
Q ss_pred EEecchhhHHHHHHHhccCcccce-------e----------------------cccccCCCCceEEecCCCCCCHHHHH
Q psy4086 105 VDFESGGYALAAVKALQDKGIHAQ-------M----------------------ARQQEQDPTNLYIANLPLNFKECDLE 155 (305)
Q Consensus 105 V~f~~~~~A~~a~~~l~g~~i~~~-------~----------------------~~~~~~~~~~l~V~nlp~~~te~~l~ 155 (305)
.+|.+.++|+.|+..|+++....+ . ........++|||+|||+.+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 667777777777777765433210 0 00122234679999999999999999
Q ss_pred HHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEeccCCCcCC
Q psy4086 156 SLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKR 222 (305)
Q Consensus 156 ~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~~~~~~~ 222 (305)
++|++||.|..|.|+.++ +|.++|||||+|.+.++|++||+.|||..|.| +.|.|.|+..+..++
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG--QTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETT--EECEEEESEECC---
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECC--EEEEEEEecCCCCCC
Confidence 999999999999999997 88999999999999999999999999999999 789999998765544
No 54
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3e-19 Score=135.58 Aligned_cols=87 Identities=18% Similarity=0.373 Sum_probs=78.8
Q ss_pred ccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEE
Q psy4086 133 QEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLL 211 (305)
Q Consensus 133 ~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~ 211 (305)
.....++|||+|||+++++++|+++|++||.|.+|+|+.++ ++.+++||||+|.+.++|++||+.|++ .|.+ +.|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g--~~l~ 89 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDG--RKAN 89 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETT--EECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCC--EEEE
Confidence 34556899999999999999999999999999999999997 789999999999999999999999998 8999 7799
Q ss_pred EEeccCCCcCC
Q psy4086 212 VKFADSGLKKR 222 (305)
Q Consensus 212 v~~a~~~~~~~ 222 (305)
|+++......+
T Consensus 90 V~~a~~~~~~~ 100 (116)
T 2cqd_A 90 VNLAYLGAKPR 100 (116)
T ss_dssp EEESTTTCCCC
T ss_pred EEEcccCCCcc
Confidence 99998754443
No 55
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.80 E-value=5.4e-19 Score=133.95 Aligned_cols=87 Identities=20% Similarity=0.360 Sum_probs=80.5
Q ss_pred cCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEE
Q psy4086 134 EQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLV 212 (305)
Q Consensus 134 ~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v 212 (305)
....++|||+|||+++++++|+++|+.||.|..|+|+.++ ++.++|||||+|.+.++|++||+.|||..|.| +.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~V 89 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG--RQIRT 89 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETT--EECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC--EEEEE
Confidence 3456889999999999999999999999999999999997 88999999999999999999999999999999 77999
Q ss_pred EeccCCCcCC
Q psy4086 213 KFADSGLKKR 222 (305)
Q Consensus 213 ~~a~~~~~~~ 222 (305)
.|+..+....
T Consensus 90 ~~a~~~~~~~ 99 (115)
T 2dgo_A 90 NWATRKPPAP 99 (115)
T ss_dssp EESSCCCCCS
T ss_pred EEccCCCCCC
Confidence 9999866554
No 56
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.4e-19 Score=134.52 Aligned_cols=87 Identities=20% Similarity=0.329 Sum_probs=80.4
Q ss_pred cCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEE
Q psy4086 134 EQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLV 212 (305)
Q Consensus 134 ~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v 212 (305)
....++|||+|||.++++++|+++|++||.|..|+|+.++ ++.++|||||+|.+.++|++||+.||+..|.+ +.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v 89 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDH--LILNV 89 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETT--EECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCC--cEEEE
Confidence 4456889999999999999999999999999999999997 88999999999999999999999999999999 77999
Q ss_pred EeccCCCcCC
Q psy4086 213 KFADSGLKKR 222 (305)
Q Consensus 213 ~~a~~~~~~~ 222 (305)
.++..+..+.
T Consensus 90 ~~a~~~~~~~ 99 (103)
T 2cq0_A 90 EWAKPSTNSG 99 (103)
T ss_dssp EESSCCCCSC
T ss_pred EECCCCCCCC
Confidence 9998865543
No 57
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.80 E-value=2.1e-19 Score=127.96 Aligned_cols=80 Identities=24% Similarity=0.487 Sum_probs=75.9
Q ss_pred CceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEecc
Q psy4086 138 TNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFAD 216 (305)
Q Consensus 138 ~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~ 216 (305)
.+|||+|||.++++++|+++|++||.|.++.++.++ ++.++|||||+|.+.++|++|++.|||..+.| +.|+|+++.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g--~~l~v~~a~ 79 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG--RPLRINWAA 79 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETT--EECEEEECC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCC--cEEEEEecC
Confidence 589999999999999999999999999999999996 88999999999999999999999999999999 779999998
Q ss_pred CCC
Q psy4086 217 SGL 219 (305)
Q Consensus 217 ~~~ 219 (305)
++.
T Consensus 80 ~~~ 82 (83)
T 3md1_A 80 KLE 82 (83)
T ss_dssp CCC
T ss_pred cCC
Confidence 753
No 58
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=7.1e-19 Score=133.06 Aligned_cols=86 Identities=28% Similarity=0.422 Sum_probs=79.4
Q ss_pred cCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEE
Q psy4086 134 EQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVK 213 (305)
Q Consensus 134 ~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~ 213 (305)
....++|||+|||+++++++|+++|++||.|++|+|+.++++.+++||||+|.+.++|++|++.||+..|.+ +.|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~ 89 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFD--RPMHVK 89 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETT--EECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC--CEEEEE
Confidence 345689999999999999999999999999999999999988999999999999999999999999999999 779999
Q ss_pred eccCCCcC
Q psy4086 214 FADSGLKK 221 (305)
Q Consensus 214 ~a~~~~~~ 221 (305)
+++....+
T Consensus 90 ~a~~~~~~ 97 (114)
T 2do0_A 90 MDERALPK 97 (114)
T ss_dssp ECSCCCCC
T ss_pred EcccCCCC
Confidence 99865444
No 59
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.80 E-value=6.7e-20 Score=132.80 Aligned_cols=82 Identities=20% Similarity=0.311 Sum_probs=71.1
Q ss_pred CceEEecCCCCCCHHHHHHHHhhCC--CeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q psy4086 138 TNLYIANLPLNFKECDLESLLAKYV--TVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKF 214 (305)
Q Consensus 138 ~~l~V~nlp~~~te~~l~~~F~~~g--~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~ 214 (305)
.+|||+|||+++++++|+++|++|| .|.+++|+.++ +|+++|||||+|.+.++|++|++.|||..|.| +.|+|++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~g--r~i~V~~ 79 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHG--QNPVVTP 79 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSS--CCCEECC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCC--EEEEEEE
Confidence 4799999999999999999999999 99999999998 89999999999999999999999999999999 6799999
Q ss_pred ccCCCcC
Q psy4086 215 ADSGLKK 221 (305)
Q Consensus 215 a~~~~~~ 221 (305)
+.+....
T Consensus 80 ~~~~~~~ 86 (90)
T 3p5t_L 80 SNKLEHH 86 (90)
T ss_dssp C------
T ss_pred CCCCccc
Confidence 9875443
No 60
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.80 E-value=1.5e-19 Score=137.15 Aligned_cols=82 Identities=24% Similarity=0.431 Sum_probs=75.0
Q ss_pred CCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEecc
Q psy4086 137 PTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFAD 216 (305)
Q Consensus 137 ~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~ 216 (305)
..+|||+|||+++++++|+++|++||.|.+|+|+.++. .++|||||+|.+.++|++||+.|||..|.| +.|+|.++.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~-~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g--~~i~V~~a~ 81 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLND--RKVFVGRFK 81 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESCHHHHHHHHHHHTTCEETT--EECEEEESS
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC-CCCceEEEEECCHHHHHHHHHHcCCCEECC--EEEEEEECC
Confidence 46899999999999999999999999999999999864 479999999999999999999999999999 779999998
Q ss_pred CCCcC
Q psy4086 217 SGLKK 221 (305)
Q Consensus 217 ~~~~~ 221 (305)
.+..+
T Consensus 82 ~~~~~ 86 (115)
T 4f25_A 82 SRKER 86 (115)
T ss_dssp CCCC-
T ss_pred Ccccc
Confidence 75443
No 61
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.5e-19 Score=131.72 Aligned_cols=86 Identities=16% Similarity=0.346 Sum_probs=78.3
Q ss_pred cCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEE
Q psy4086 134 EQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVK 213 (305)
Q Consensus 134 ~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~ 213 (305)
....++|||+|||+++++++|+++|++||.|.+|+|+.++.+ +++||||+|.+.++|++|++.||+..|.| +.|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~V~ 88 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILG--KEVKVN 88 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETT--EEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCC--CeEEEE
Confidence 445689999999999999999999999999999999998643 68999999999999999999999999999 789999
Q ss_pred eccCCCcCC
Q psy4086 214 FADSGLKKR 222 (305)
Q Consensus 214 ~a~~~~~~~ 222 (305)
|+..+..++
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2cqi_A 89 WATTPSSQK 97 (103)
T ss_dssp ECCCTTCCC
T ss_pred ECCCCcccc
Confidence 999866554
No 62
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.80 E-value=2.3e-19 Score=128.93 Aligned_cols=81 Identities=20% Similarity=0.385 Sum_probs=75.1
Q ss_pred CCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q psy4086 136 DPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKF 214 (305)
Q Consensus 136 ~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~ 214 (305)
..++|||+|||.++++++|+++|++||.|.+++++.++ ++.++|||||+|.+.++|++|++.|||..+.| +.|+|++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~ 82 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG--RQIRTNW 82 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT--EECEEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC--eEEEEEe
Confidence 46789999999999999999999999999999999997 88999999999999999999999999999999 7799999
Q ss_pred ccCC
Q psy4086 215 ADSG 218 (305)
Q Consensus 215 a~~~ 218 (305)
++.+
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 8764
No 63
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=3.1e-19 Score=131.33 Aligned_cols=86 Identities=23% Similarity=0.423 Sum_probs=78.4
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCC--C--CcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccE
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNN--N--TSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPL 210 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~--g--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l 210 (305)
.+.++|||+|||+++++++|+++|++||.|..|+|+.++. | .+++||||+|.+.++|++|++.|||..|.+ +.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l 80 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDG--HKL 80 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETT--EEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCC--eEE
Confidence 3568999999999999999999999999999999998763 3 789999999999999999999999999999 779
Q ss_pred EEEeccCCCcCC
Q psy4086 211 LVKFADSGLKKR 222 (305)
Q Consensus 211 ~v~~a~~~~~~~ 222 (305)
+|++++.....+
T Consensus 81 ~V~~a~~~~~~~ 92 (98)
T 2cpf_A 81 EVRISERATKPA 92 (98)
T ss_dssp EEECSSCSSCCC
T ss_pred EEEEccCCCCCC
Confidence 999998866554
No 64
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.4e-19 Score=133.42 Aligned_cols=84 Identities=24% Similarity=0.419 Sum_probs=77.8
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-C-CCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEE
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-N-NTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLV 212 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~-g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v 212 (305)
...++|||+|||+++++++|+++|+.|| |.+|+|+.++ + +.++|||||+|.+.++|++|| .||+..|.+ +.|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g--~~l~V 88 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN--KRIRV 88 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETT--EECEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCC--cEEEE
Confidence 4568999999999999999999999999 9999999998 4 899999999999999999999 999999999 77999
Q ss_pred EeccCCCcCC
Q psy4086 213 KFADSGLKKR 222 (305)
Q Consensus 213 ~~a~~~~~~~ 222 (305)
+++..+..+.
T Consensus 89 ~~a~~~~~~~ 98 (104)
T 1wi8_A 89 DVADQAQDKD 98 (104)
T ss_dssp EECCCCCCCC
T ss_pred EEccCCCCCC
Confidence 9999876654
No 65
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=5e-19 Score=133.23 Aligned_cols=88 Identities=20% Similarity=0.342 Sum_probs=80.4
Q ss_pred ccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhC------CCCCCC
Q psy4086 133 QEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFN------GSTLPG 205 (305)
Q Consensus 133 ~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~------g~~~~g 205 (305)
.....++|||+|||+++++++|+++|+.||.|.+|+|+.++ ++.++|||||+|.+.++|++|++.|| +..|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34456899999999999999999999999999999999998 78999999999999999999999999 999999
Q ss_pred CCccEEEEeccCCCcCC
Q psy4086 206 SKEPLLVKFADSGLKKR 222 (305)
Q Consensus 206 ~~~~l~v~~a~~~~~~~ 222 (305)
+.|+|.++..+....
T Consensus 91 --~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 91 --RQLKVDLAVTRDEAA 105 (111)
T ss_dssp --CEEEEECCCCCCCCC
T ss_pred --EEEEEEECCCCccCC
Confidence 779999998865543
No 66
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.6e-19 Score=131.16 Aligned_cols=87 Identities=22% Similarity=0.505 Sum_probs=79.1
Q ss_pred ccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEE
Q psy4086 133 QEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLV 212 (305)
Q Consensus 133 ~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v 212 (305)
.....++|||+|||+++++++|+++|++||.|.+|+|+.++.+ +++||||+|.+.++|++|++.||+..|.+ +.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v 87 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEG--RKIEV 87 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETT--EECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECC--EEEEE
Confidence 3445689999999999999999999999999999999998754 89999999999999999999999999999 77999
Q ss_pred EeccCCCcCC
Q psy4086 213 KFADSGLKKR 222 (305)
Q Consensus 213 ~~a~~~~~~~ 222 (305)
.++..+..+.
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2cq3_A 88 NNATARVMTN 97 (103)
T ss_dssp EECCSSCCCC
T ss_pred EEcccCCCCC
Confidence 9999866554
No 67
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.2e-19 Score=133.28 Aligned_cols=85 Identities=20% Similarity=0.354 Sum_probs=76.3
Q ss_pred cCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEE
Q psy4086 134 EQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVK 213 (305)
Q Consensus 134 ~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~ 213 (305)
....++|||+|||.++++++|+++|++||.|+.|+|..+ +.+++||||+|.+.++|++||+.||+..|.+ +.|+|+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~V~ 94 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDG--YRLRVE 94 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHTTCEETT--EECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECC--eEEEEE
Confidence 445689999999999999999999999999999999765 3579999999999999999999999999999 779999
Q ss_pred eccCCCcCC
Q psy4086 214 FADSGLKKR 222 (305)
Q Consensus 214 ~a~~~~~~~ 222 (305)
+++......
T Consensus 95 ~a~~~~~~~ 103 (109)
T 1x4a_A 95 FPRSGRGTG 103 (109)
T ss_dssp CCCCCCCCC
T ss_pred EcccCCCCC
Confidence 998865443
No 68
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.7e-19 Score=135.22 Aligned_cols=88 Identities=19% Similarity=0.296 Sum_probs=80.2
Q ss_pred ccCCCCceEEecCCCCCCHHHHHHHHhhCCCeE--------EEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCC
Q psy4086 133 QEQDPTNLYIANLPLNFKECDLESLLAKYVTVV--------STRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTL 203 (305)
Q Consensus 133 ~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~--------~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 203 (305)
.....++|||+|||+++++++|+++|++||.|. .|+|+.++ ++.++|||||+|.+.++|++||+.|||..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 344678999999999999999999999999999 69999996 899999999999999999999999999999
Q ss_pred CCCCccEEEEeccCCCcCC
Q psy4086 204 PGSKEPLLVKFADSGLKKR 222 (305)
Q Consensus 204 ~g~~~~l~v~~a~~~~~~~ 222 (305)
.| +.|+|+++..+..+.
T Consensus 91 ~g--~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 91 QG--SKLKVSLARKKPPMN 107 (113)
T ss_dssp TT--EECEEECSSCCCCST
T ss_pred CC--CEEEEEECCCCCCCC
Confidence 99 779999998865543
No 69
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.79 E-value=3.8e-19 Score=130.35 Aligned_cols=82 Identities=17% Similarity=0.304 Sum_probs=77.4
Q ss_pred CCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEec
Q psy4086 137 PTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFA 215 (305)
Q Consensus 137 ~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a 215 (305)
.++|||+|||.++++++|+++|++||.|.+|+|+.++ +|.++|||||+|.+.++|++|++.|||..|.| +.|+|+++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~V~~a 79 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGS--RFLKCGYS 79 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETT--EECEEEEC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECC--eEEEEEEc
Confidence 5789999999999999999999999999999999997 78999999999999999999999999999999 77999999
Q ss_pred cCCCc
Q psy4086 216 DSGLK 220 (305)
Q Consensus 216 ~~~~~ 220 (305)
..+..
T Consensus 80 ~~~~~ 84 (96)
T 2x1f_A 80 SNSDI 84 (96)
T ss_dssp SCSSG
T ss_pred CCCCC
Confidence 87543
No 70
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.79 E-value=9.2e-19 Score=132.69 Aligned_cols=77 Identities=30% Similarity=0.495 Sum_probs=71.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceeccc
Q psy4086 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQ 132 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~ 132 (305)
...++|||+|||+++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++|++.||+..|.++.++.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999888776653
No 71
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.7e-19 Score=132.28 Aligned_cols=83 Identities=18% Similarity=0.262 Sum_probs=77.5
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEE
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVK 213 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~ 213 (305)
...++|||+|||.++++++|+++|+.||.|.+|.|+.++ ++.++|||||+|.+.++|++|++.|||..|.| +.|+|+
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~V~ 98 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG--QPISVD 98 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSS--SBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECC--cEEEEE
Confidence 345789999999999999999999999999999999998 78999999999999999999999999999999 779999
Q ss_pred eccCCC
Q psy4086 214 FADSGL 219 (305)
Q Consensus 214 ~a~~~~ 219 (305)
++..+.
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 998754
No 72
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.79 E-value=5.3e-20 Score=143.72 Aligned_cols=117 Identities=8% Similarity=0.046 Sum_probs=75.0
Q ss_pred ceEEEEecchhhHHHHHHHhccC----cccc----eecccccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeC
Q psy4086 101 GYGFVDFESGGYALAAVKALQDK----GIHA----QMARQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRD 172 (305)
Q Consensus 101 G~afV~f~~~~~A~~a~~~l~g~----~i~~----~~~~~~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~ 172 (305)
|+||.+|..++.+..++..+... .... ..........++|||+|||+++||++|+++|++|| |++|+|+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~gg~~~g~~~g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d 80 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIG 80 (139)
T ss_dssp -------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCS
T ss_pred CcccccccCccccchhcccchhccCCCCCCCCCCCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEC
Confidence 57888888887777776653211 1110 01112334567899999999999999999999999 779999999
Q ss_pred CCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEeccCCCcC
Q psy4086 173 NNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKK 221 (305)
Q Consensus 173 ~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~~~~~~ 221 (305)
++++++|||||+|.+.++|++|| .+|+..|.+ +.|+|..+......
T Consensus 81 ~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~g--R~i~V~~a~~~~~~ 126 (139)
T 2hgn_A 81 PDGRVTGEADVEFATHEEAVAAM-SKDRANMQH--RYIELFLNSTTGAS 126 (139)
T ss_dssp SSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSS--CCCCCEECCCSCC-
T ss_pred CCCCCceEEEEEeCCHHHHHHHH-hhCCCEECC--EEEEEEECCCCCCC
Confidence 98999999999999999999999 789999999 67999998875543
No 73
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=3.7e-19 Score=131.14 Aligned_cols=83 Identities=19% Similarity=0.348 Sum_probs=77.4
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeE-EEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCcc---
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVV-STRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEP--- 209 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~-~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~--- 209 (305)
...++|||+|||+++++++|+++|++||.|. +|+|+.++ ++.++|||||+|.+.++|++|++.|||..|.+ +.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~~~~ 84 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPG--ATPAK 84 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESS--CSSCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCC--CCcce
Confidence 4568999999999999999999999999999 99999998 88999999999999999999999999999999 66
Q ss_pred -EEEEeccCCC
Q psy4086 210 -LLVKFADSGL 219 (305)
Q Consensus 210 -l~v~~a~~~~ 219 (305)
|+|.|+....
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 9999988753
No 74
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.7e-19 Score=132.02 Aligned_cols=82 Identities=20% Similarity=0.337 Sum_probs=76.2
Q ss_pred ccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEE
Q psy4086 133 QEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLV 212 (305)
Q Consensus 133 ~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v 212 (305)
.....++|||+|||+++|+++|+++|+.||.|.+|+|+.++.+.++|||||+|.+.++|.+||. +++..|.| +.|.|
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~g--r~l~V 83 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKE--TDLLI 83 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTT--TTCEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECC--EEEEE
Confidence 4455689999999999999999999999999999999999888999999999999999999998 89999999 77999
Q ss_pred EeccC
Q psy4086 213 KFADS 217 (305)
Q Consensus 213 ~~a~~ 217 (305)
.++..
T Consensus 84 ~~~~~ 88 (103)
T 1s79_A 84 LFKDD 88 (103)
T ss_dssp EEHHH
T ss_pred EEchH
Confidence 99765
No 75
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.79 E-value=5e-19 Score=131.47 Aligned_cols=84 Identities=23% Similarity=0.502 Sum_probs=77.3
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEE
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVK 213 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~ 213 (305)
...++|||+|||+++++++|+++|++|| |.+|+|+.++ ++.++|||||+|.+.++|++|+ .||+..|.| +.|+|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g--~~l~V~ 88 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGD--RSLRVD 88 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETT--EECEEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECC--eEEEEE
Confidence 4568899999999999999999999996 9999999998 7899999999999999999999 899999999 779999
Q ss_pred eccCCCcCC
Q psy4086 214 FADSGLKKR 222 (305)
Q Consensus 214 ~a~~~~~~~ 222 (305)
++..+..++
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2dng_A 89 IAEGRKQDK 97 (103)
T ss_dssp ECCCCCCCC
T ss_pred EecCCCCCC
Confidence 998865544
No 76
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.79 E-value=3.3e-19 Score=127.53 Aligned_cols=80 Identities=20% Similarity=0.321 Sum_probs=75.5
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEE
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVK 213 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~ 213 (305)
...++|||+|||.++++++|+++|++||.|.+++++.++ ++.++|||||+|.+.++|++|++.|||..+.| +.|+|+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~ 82 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG--RTIRVN 82 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT--EECEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECC--cEEEEE
Confidence 456899999999999999999999999999999999986 88899999999999999999999999999999 779999
Q ss_pred ecc
Q psy4086 214 FAD 216 (305)
Q Consensus 214 ~a~ 216 (305)
|++
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 974
No 77
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.79 E-value=5.8e-19 Score=136.53 Aligned_cols=86 Identities=24% Similarity=0.349 Sum_probs=79.2
Q ss_pred ccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEE
Q psy4086 133 QEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLL 211 (305)
Q Consensus 133 ~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~ 211 (305)
.....++|||+|||+++++++|+++|++||.|..|+|+.++ ++.++|||||+|.+.++|++||+.|||..|.| +.|+
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g--~~l~ 119 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG--RRIR 119 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSS--SCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC--EEEE
Confidence 34456899999999999999999999999999999999997 78999999999999999999999999999999 7799
Q ss_pred EEeccCCCc
Q psy4086 212 VKFADSGLK 220 (305)
Q Consensus 212 v~~a~~~~~ 220 (305)
|+|+..+..
T Consensus 120 V~~a~~~~p 128 (129)
T 2kxn_B 120 VDFSITKRP 128 (129)
T ss_dssp ESCCSSSSC
T ss_pred EEEecCCCC
Confidence 999987543
No 78
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.78 E-value=4.5e-19 Score=133.32 Aligned_cols=87 Identities=15% Similarity=0.243 Sum_probs=79.8
Q ss_pred ccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEE
Q psy4086 133 QEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLL 211 (305)
Q Consensus 133 ~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~ 211 (305)
.....++|||+|||.++++++|+++|+.||.|.+|+|+.++ ++.++|||||+|.+.++|++|++.|||..|.| +.|+
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~ 99 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG--QTIQ 99 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETT--EECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC--cEEE
Confidence 34456789999999999999999999999999999999997 88999999999999999999999999999999 7799
Q ss_pred EEeccCCCcC
Q psy4086 212 VKFADSGLKK 221 (305)
Q Consensus 212 v~~a~~~~~~ 221 (305)
|.|+..+..+
T Consensus 100 V~~a~~~~~~ 109 (110)
T 1oo0_B 100 VDWCFVKGPK 109 (110)
T ss_dssp EEESEESSCC
T ss_pred EEEcccCCCC
Confidence 9999876543
No 79
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.78 E-value=1e-18 Score=126.93 Aligned_cols=84 Identities=23% Similarity=0.408 Sum_probs=77.3
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKF 214 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~ 214 (305)
...++|||+|||.++++++|+++|++||.|..++|..+ ++.+++||||+|.+.++|++|++.||+..|.| +.|+|++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g--~~l~v~~ 82 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSG--REIDVRI 82 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTT--BCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECC--cEEEEEE
Confidence 45689999999999999999999999999999999985 67899999999999999999999999999999 7799999
Q ss_pred ccCCCcC
Q psy4086 215 ADSGLKK 221 (305)
Q Consensus 215 a~~~~~~ 221 (305)
++.....
T Consensus 83 a~~~~~~ 89 (92)
T 2dgv_A 83 DRNASGP 89 (92)
T ss_dssp CSCCSSC
T ss_pred cCCCCCC
Confidence 9876543
No 80
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.78 E-value=9.3e-19 Score=129.04 Aligned_cols=81 Identities=17% Similarity=0.356 Sum_probs=75.8
Q ss_pred cCCCCceEEecCCCCCCHHHHHHHHhhCCCeEE--------EEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCC
Q psy4086 134 EQDPTNLYIANLPLNFKECDLESLLAKYVTVVS--------TRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLP 204 (305)
Q Consensus 134 ~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~--------v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 204 (305)
....++|||+|||.++++++|+++|++||.|.+ ++|+.++ ++.++|||||+|.+.++|++|++.|||..|.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 345688999999999999999999999999999 9999997 7899999999999999999999999999999
Q ss_pred CCCccEEEEecc
Q psy4086 205 GSKEPLLVKFAD 216 (305)
Q Consensus 205 g~~~~l~v~~a~ 216 (305)
| +.|+|++|+
T Consensus 90 g--~~l~V~~A~ 99 (99)
T 2la6_A 90 G--NPIKVSFAT 99 (99)
T ss_dssp S--SBCEEEECC
T ss_pred C--cEEEEEecC
Confidence 9 779999974
No 81
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.78 E-value=3.6e-19 Score=142.14 Aligned_cols=76 Identities=18% Similarity=0.295 Sum_probs=70.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccC--CeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceeccc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYG--PIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQ 132 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G--~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~ 132 (305)
..++|||+|||+++|+++|+++|+.|| .|.+|+|+.|+.+|+++|||||+|.+.++|++||+.|||..|.++.++.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V 131 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDV 131 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEE
Confidence 457899999999999999999999999 9999999999999999999999999999999999999999998887653
No 82
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.78 E-value=1.8e-19 Score=130.50 Aligned_cols=74 Identities=26% Similarity=0.372 Sum_probs=67.8
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhccC--CeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceeccc
Q psy4086 59 TNLYIRGLTQDTTDKDLINMCSQYG--PIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQ 132 (305)
Q Consensus 59 ~~l~V~~Lp~~~t~~~L~~~f~~~G--~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~ 132 (305)
.+|||+|||+++|+++|+++|++|| .|.+++|+.++.+|+++|||||+|.+.++|++|++.|||..+.++.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V 77 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVV 77 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEE
Confidence 5699999999999999999999999 9999999999999999999999999999999999999999988877653
No 83
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.78 E-value=9.2e-19 Score=132.68 Aligned_cols=78 Identities=22% Similarity=0.413 Sum_probs=71.5
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 54 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
+....++|||+|||+++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++|++.|||..|.++.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 344568899999999999999999999999999999999998999999999999999999999999998887776655
No 84
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=9.1e-19 Score=127.96 Aligned_cols=76 Identities=29% Similarity=0.439 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
...++|||+|||+++++++|+++|++||.|.+|.+++++.+++++|||||+|.+.++|++|++.|||..|.++.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3457799999999999999999999999999999999999999999999999999999999999999988877665
No 85
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.78 E-value=4.8e-19 Score=129.49 Aligned_cols=81 Identities=23% Similarity=0.359 Sum_probs=76.5
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKF 214 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~ 214 (305)
...++|||+|||+++++++|+++|++||.|.+|+|+.++++.++|||||+|.+.++|++|++.||+..|.+ +.|+|++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~V~~ 91 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYG--RPINVSG 91 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETT--EECEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECC--CEEEEEE
Confidence 44578999999999999999999999999999999999888999999999999999999999999999999 7799999
Q ss_pred ccC
Q psy4086 215 ADS 217 (305)
Q Consensus 215 a~~ 217 (305)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 864
No 86
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=8.3e-19 Score=130.68 Aligned_cols=77 Identities=27% Similarity=0.437 Sum_probs=71.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 55 QLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 55 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
....++|||+|||+++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++|++.||+..|.++.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34557899999999999999999999999999999999998999999999999999999999999998888776665
No 87
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=6.3e-19 Score=128.60 Aligned_cols=81 Identities=28% Similarity=0.482 Sum_probs=76.0
Q ss_pred cCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEE
Q psy4086 134 EQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLV 212 (305)
Q Consensus 134 ~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v 212 (305)
....++|||+|||.++++++|+++|++||.|.+|+|+.++ ++.+++||||+|.+.++|++|++.||+..|.+ +.|+|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v 90 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFG--RVIKA 90 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETT--EEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCC--cEEEE
Confidence 3456899999999999999999999999999999999998 68899999999999999999999999999999 77999
Q ss_pred Eecc
Q psy4086 213 KFAD 216 (305)
Q Consensus 213 ~~a~ 216 (305)
+||+
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9974
No 88
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.6e-19 Score=128.78 Aligned_cols=83 Identities=11% Similarity=0.174 Sum_probs=75.8
Q ss_pred CCCCceEEecCCCCCCHHHHH----HHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccE
Q psy4086 135 QDPTNLYIANLPLNFKECDLE----SLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPL 210 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~----~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l 210 (305)
.+.++|||+|||+++++++|+ ++|++||.|.+|+|+.++.+ ++||||+|.+.++|++||+.|||..|.| +.|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~g--r~l 82 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGS--KKI 82 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETT--EEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECC--eEE
Confidence 345789999999999999999 99999999999999998854 8899999999999999999999999999 779
Q ss_pred EEEeccCCCcC
Q psy4086 211 LVKFADSGLKK 221 (305)
Q Consensus 211 ~v~~a~~~~~~ 221 (305)
+|++++....+
T Consensus 83 ~V~~a~~~~~~ 93 (96)
T 2dgx_A 83 LVSLATGASGP 93 (96)
T ss_dssp EEEECCCSSCC
T ss_pred EEEEcCCCCCC
Confidence 99999875443
No 89
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=9.9e-19 Score=127.54 Aligned_cols=75 Identities=27% Similarity=0.502 Sum_probs=70.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
..++|||+|||+++++++|+++|++||+|.+|+|+.++.+++++|||||+|.+.++|++|++.|||..|.++.++
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 89 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIK 89 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 457799999999999999999999999999999999999999999999999999999999999999888877654
No 90
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.6e-19 Score=126.85 Aligned_cols=77 Identities=61% Similarity=1.002 Sum_probs=72.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecccc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQ 133 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~~ 133 (305)
..++|||+|||+++++++|+++|++||+|.+++|+.++.+++++|||||+|.+.++|++|++.|||..|.++.++..
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 80 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQS 80 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeec
Confidence 34789999999999999999999999999999999999899999999999999999999999999999999887643
No 91
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.9e-19 Score=128.60 Aligned_cols=81 Identities=26% Similarity=0.352 Sum_probs=76.2
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEE
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVK 213 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~ 213 (305)
...++|||+|||.++++++|+++|++||.|.+|+|+.++ ++.++|||||+|.+.++|++|++.|||..|.+ +.|+|+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~ 90 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG--RRIRVS 90 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETT--EEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC--EEEEEE
Confidence 345789999999999999999999999999999999998 68999999999999999999999999999999 779999
Q ss_pred eccC
Q psy4086 214 FADS 217 (305)
Q Consensus 214 ~a~~ 217 (305)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9875
No 92
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.7e-18 Score=127.89 Aligned_cols=76 Identities=24% Similarity=0.482 Sum_probs=69.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 55 QLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 55 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
....++|||+|||+++|+++|+++|++||.|.+|+|+.++ +++++|||||+|.+.++|++|++.|||..|.++.++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 89 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIK 89 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3455779999999999999999999999999999999999 899999999999999999999999998888776654
No 93
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.78 E-value=9.7e-19 Score=131.06 Aligned_cols=85 Identities=24% Similarity=0.464 Sum_probs=78.6
Q ss_pred cccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccE
Q psy4086 132 QQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPL 210 (305)
Q Consensus 132 ~~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l 210 (305)
......++|||+|||..+++++|+++|++||.|.+|+|+.++ ++.++|||||+|.+.++|++|++.|||..|.| +.|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g--~~l 98 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG--RPM 98 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSS--SCC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC--EEE
Confidence 344556889999999999999999999999999999999997 78999999999999999999999999999999 779
Q ss_pred EEEeccCC
Q psy4086 211 LVKFADSG 218 (305)
Q Consensus 211 ~v~~a~~~ 218 (305)
+|+++..+
T Consensus 99 ~V~~a~~k 106 (108)
T 2jrs_A 99 KVGHVTER 106 (108)
T ss_dssp EEECSCSS
T ss_pred EEEEcccC
Confidence 99999875
No 94
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.1e-19 Score=130.73 Aligned_cols=83 Identities=7% Similarity=0.092 Sum_probs=74.7
Q ss_pred cCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEE
Q psy4086 134 EQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVK 213 (305)
Q Consensus 134 ~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~ 213 (305)
....++|||+|||+++|+++|+++|+.||. ++|+|+.+++++++|||||+|.+.++|++||+ +|+..|.+ +.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~g--r~i~V~ 87 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQH--RYVELF 87 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSS--SCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECC--cEEEEE
Confidence 345678999999999999999999999994 59999999999999999999999999999995 79999999 679999
Q ss_pred eccCCCc
Q psy4086 214 FADSGLK 220 (305)
Q Consensus 214 ~a~~~~~ 220 (305)
.+.....
T Consensus 88 ~~~~~~~ 94 (102)
T 1wez_A 88 LNSTAGT 94 (102)
T ss_dssp EECCCCC
T ss_pred ECCCCCC
Confidence 9876543
No 95
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=2.5e-18 Score=124.39 Aligned_cols=79 Identities=27% Similarity=0.423 Sum_probs=72.8
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKF 214 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~ 214 (305)
...++|||+|||.++++++|+++|++||.|.+|++. ++||||+|.+.++|++|++.||+..|.+ +.|+|++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~ 76 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHG--VNINVEA 76 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSS--CBCEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCC--cEEEEEE
Confidence 456899999999999999999999999999999987 6799999999999999999999999999 7799999
Q ss_pred ccCCCcCC
Q psy4086 215 ADSGLKKR 222 (305)
Q Consensus 215 a~~~~~~~ 222 (305)
+..+....
T Consensus 77 a~~~~~~~ 84 (90)
T 2dnq_A 77 SKNKSKAS 84 (90)
T ss_dssp SSCCCCCC
T ss_pred CCCCCCCC
Confidence 99866554
No 96
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5e-19 Score=130.76 Aligned_cols=82 Identities=20% Similarity=0.410 Sum_probs=73.4
Q ss_pred cCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCC--CCCCCCCccEE
Q psy4086 134 EQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNG--STLPGSKEPLL 211 (305)
Q Consensus 134 ~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g--~~~~g~~~~l~ 211 (305)
....++|||+|||++++|++|+++|++||.|++|+|+++ ||||||+|++.++|++|++.|++ ..|.| ++|+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G--r~l~ 85 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRG--QPIY 85 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETT--EECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECC--EEEE
Confidence 345689999999999999999999999999999999965 79999999999999999998864 67899 8899
Q ss_pred EEeccCCCcCC
Q psy4086 212 VKFADSGLKKR 222 (305)
Q Consensus 212 v~~a~~~~~~~ 222 (305)
|.|++.+..+.
T Consensus 86 V~~A~~~~~~~ 96 (105)
T 1sjq_A 86 IQFSNHKELKT 96 (105)
T ss_dssp BCCCSSSSCCC
T ss_pred EEEcCCCCCCc
Confidence 99998765554
No 97
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=9.1e-19 Score=130.03 Aligned_cols=78 Identities=22% Similarity=0.386 Sum_probs=72.1
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 54 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
+....++|||+|||+++++++|+++|++||+|.+|.|++++.+++++|||||+|.+.++|++|++.|||..|.++.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 344568899999999999999999999999999999999998999999999999999999999999999888877665
No 98
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.78 E-value=4.4e-19 Score=134.47 Aligned_cols=103 Identities=23% Similarity=0.271 Sum_probs=86.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecccccCC
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQD 136 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~~~~~ 136 (305)
..++|||+|||+++++++|+++|+.||.|.+|.|+++ +.++|||||+|.+.++|++|++.|||..+.++.++.....
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 3467999999999999999999999999999999975 4569999999999999999999999988887766643332
Q ss_pred CCceEEecCCCCCCHHHHHHHHhhCCC
Q psy4086 137 PTNLYIANLPLNFKECDLESLLAKYVT 163 (305)
Q Consensus 137 ~~~l~V~nlp~~~te~~l~~~F~~~g~ 163 (305)
...- ..+++...++++|+++|++||.
T Consensus 84 ~~~~-~~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 84 ANRA-FQKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHH-TTTSCHHHHHHHHHHHHHHHCC
T ss_pred CChh-hhhhhHhHhHHHHHHHHHHhCC
Confidence 2111 1577888899999999999984
No 99
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.78 E-value=2.6e-19 Score=130.75 Aligned_cols=72 Identities=24% Similarity=0.375 Sum_probs=65.2
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhccCC--eeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCc----ccceec
Q psy4086 59 TNLYIRGLTQDTTDKDLINMCSQYGP--IISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKG----IHAQMA 130 (305)
Q Consensus 59 ~~l~V~~Lp~~~t~~~L~~~f~~~G~--i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~----i~~~~~ 130 (305)
.||||+|||+++|+++|+++|++||. |.+|+|++|+.+|++||||||+|.+.++|++|++.|||.. |.++.+
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 46999999999999999999999995 6799999999999999999999999999999999999863 555544
No 100
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=4.9e-19 Score=131.94 Aligned_cols=86 Identities=21% Similarity=0.342 Sum_probs=79.2
Q ss_pred cCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEE
Q psy4086 134 EQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLV 212 (305)
Q Consensus 134 ~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v 212 (305)
....++|||+|||+++++++|+++|++||.|.+|+|+.++ ++.++|||||+|.+.++|++||+. ++..|.| +.|+|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g--~~l~V 89 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDG--RNIDP 89 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETT--EEEBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECC--EEEEE
Confidence 4556899999999999999999999999999999999997 889999999999999999999998 9999999 77999
Q ss_pred EeccCCCcCC
Q psy4086 213 KFADSGLKKR 222 (305)
Q Consensus 213 ~~a~~~~~~~ 222 (305)
+++..+....
T Consensus 90 ~~a~~~~~~~ 99 (105)
T 2dh8_A 90 KPCTPRGMQP 99 (105)
T ss_dssp CCSCCSSCCT
T ss_pred EEccCCCCCC
Confidence 9998765544
No 101
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.77 E-value=6.9e-19 Score=126.68 Aligned_cols=82 Identities=16% Similarity=0.336 Sum_probs=75.5
Q ss_pred CCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCC-cccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEE
Q psy4086 136 DPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNT-SKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVK 213 (305)
Q Consensus 136 ~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~-~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~ 213 (305)
..++|||+|||.++++++|+++|++||.|.++.|+.++ ++. ++|||||+|.+.++|++|++.|||..+.| +.|+|+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~ 80 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDG--QEITAT 80 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETT--EECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECC--eEEEEE
Confidence 46899999999999999999999999999999999987 333 89999999999999999999999999999 779999
Q ss_pred eccCCC
Q psy4086 214 FADSGL 219 (305)
Q Consensus 214 ~a~~~~ 219 (305)
++....
T Consensus 81 ~a~~~~ 86 (88)
T 4a8x_A 81 AVLAPW 86 (88)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 997654
No 102
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.77 E-value=2e-18 Score=127.25 Aligned_cols=75 Identities=21% Similarity=0.335 Sum_probs=70.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeE--------EEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccce
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIIS--------TKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQ 128 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~--------~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~ 128 (305)
..++|||+|||+++++++|+++|++||.|.+ ++|++++.+|+++|||||+|.+.++|++|++.|||..+.++
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~ 91 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 91 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 4578999999999999999999999999999 99999999999999999999999999999999999988876
Q ss_pred ecc
Q psy4086 129 MAR 131 (305)
Q Consensus 129 ~~~ 131 (305)
.++
T Consensus 92 ~l~ 94 (99)
T 2la6_A 92 PIK 94 (99)
T ss_dssp BCE
T ss_pred EEE
Confidence 554
No 103
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.77 E-value=1.1e-18 Score=124.84 Aligned_cols=76 Identities=32% Similarity=0.509 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
...++|||+|||+++++++|+++|++||.|.++.+++++.+++++|||||+|.+.++|++|++.|||..+.++.++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 80 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 80 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 3457899999999999999999999999999999999988999999999999999999999999999988877654
No 104
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=8.3e-19 Score=133.14 Aligned_cols=83 Identities=19% Similarity=0.307 Sum_probs=77.2
Q ss_pred CCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEec
Q psy4086 137 PTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFA 215 (305)
Q Consensus 137 ~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a 215 (305)
.++|||+|||+++++++|+++|+.||.|..|+|+.++ ++.++|||||+|.+.++|++||+. ++..|.| +.|+|.++
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g--~~l~V~~a 103 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDG--RVVEPKRA 103 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETT--EEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECC--EEEEEEEC
Confidence 4789999999999999999999999999999999997 789999999999999999999997 9999999 77999999
Q ss_pred cCCCcCC
Q psy4086 216 DSGLKKR 222 (305)
Q Consensus 216 ~~~~~~~ 222 (305)
..+....
T Consensus 104 ~~~~~~~ 110 (116)
T 1x4b_A 104 VAREESG 110 (116)
T ss_dssp SSCCCCC
T ss_pred CCCccCC
Confidence 8865544
No 105
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.8e-18 Score=130.79 Aligned_cols=88 Identities=56% Similarity=0.929 Sum_probs=78.9
Q ss_pred ccccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCC-----
Q psy4086 131 RQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPG----- 205 (305)
Q Consensus 131 ~~~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----- 205 (305)
.......++|||+|||.++++++|+++|+.||.|.+|+|+.++++.++|||||+|.+.++|++|++.|||..|.+
T Consensus 19 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 19 KQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp SCCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 344556789999999999999999999999999999999999988999999999999999999999999999953
Q ss_pred -CCccEEEEeccCC
Q psy4086 206 -SKEPLLVKFADSG 218 (305)
Q Consensus 206 -~~~~l~v~~a~~~ 218 (305)
..++|.|+|+++.
T Consensus 99 ~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 99 APTEPLLCKFSGPS 112 (114)
T ss_dssp CCSSCBEEEECCCS
T ss_pred CCCCceeEEccCCC
Confidence 1277999999853
No 106
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=129.18 Aligned_cols=77 Identities=22% Similarity=0.264 Sum_probs=71.0
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 55 QLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 55 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
....++|||+|||+++++++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++|++.|||..|.++.++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 34557899999999999999999999999999999999999999999999999999999999999998888776654
No 107
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.77 E-value=1.4e-18 Score=129.87 Aligned_cols=81 Identities=21% Similarity=0.408 Sum_probs=76.5
Q ss_pred cCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEE
Q psy4086 134 EQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVK 213 (305)
Q Consensus 134 ~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~ 213 (305)
....++|||+|||+.+++++|+++|++||.|.+|+|+.++++.++|||||+|.+.++|++|++.|||..|.| +.|+|+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~V~ 103 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDG--RPMNIQ 103 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT--EECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCC--cEEEEE
Confidence 345688999999999999999999999999999999999989999999999999999999999999999999 779999
Q ss_pred ecc
Q psy4086 214 FAD 216 (305)
Q Consensus 214 ~a~ 216 (305)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 108
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.9e-18 Score=127.32 Aligned_cols=75 Identities=19% Similarity=0.424 Sum_probs=69.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
...++|||+|||.++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++|++ ||+..|.++.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~ 82 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVE 82 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEE
Confidence 355789999999999999999999999999999999999999999999999999999999999 888877766554
No 109
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-18 Score=129.39 Aligned_cols=77 Identities=19% Similarity=0.376 Sum_probs=70.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeC-CCCCCccceEEEEecchhhHHHHHHHh-ccCcccceecc
Q psy4086 55 QLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILD-KTTNKCRGYGFVDFESGGYALAAVKAL-QDKGIHAQMAR 131 (305)
Q Consensus 55 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~-~~~g~~~G~afV~f~~~~~A~~a~~~l-~g~~i~~~~~~ 131 (305)
....++|||+|||+++++++|+++|++||.|..|+|+++ +.+++++|||||+|.+.++|++|++.| |+..|.++.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 345578999999999999999999999999999999999 788999999999999999999999999 88887776554
No 110
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1e-18 Score=132.19 Aligned_cols=77 Identities=17% Similarity=0.278 Sum_probs=70.7
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 54 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
++...++|||+|||+++++++|+++|++||.|.+|+|+.++.+++++|||||+|.+.++|++|+ .|||..|.++.++
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 97 (114)
T 2cq4_A 21 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPII 97 (114)
T ss_dssp THHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEE
Confidence 3445688999999999999999999999999999999999999999999999999999999999 8999888776654
No 111
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=139.31 Aligned_cols=81 Identities=20% Similarity=0.312 Sum_probs=75.9
Q ss_pred CCCceEEecCCCCCCHHHHHHHHhhCC--CeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEE
Q psy4086 136 DPTNLYIANLPLNFKECDLESLLAKYV--TVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLV 212 (305)
Q Consensus 136 ~~~~l~V~nlp~~~te~~l~~~F~~~g--~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v 212 (305)
..++|||+|||+++++++|+++|+.|| .|.+|+|+.|+ +|+++|||||+|.+.++|++||+.|||..|.| +.|+|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~G--r~l~V 131 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNG--EKVDV 131 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETT--EECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC--eEeEE
Confidence 457999999999999999999999999 99999999998 89999999999999999999999999999999 78999
Q ss_pred EeccCC
Q psy4086 213 KFADSG 218 (305)
Q Consensus 213 ~~a~~~ 218 (305)
+++...
T Consensus 132 ~~a~~~ 137 (156)
T 3n9u_C 132 RPATRQ 137 (156)
T ss_dssp EECCHH
T ss_pred EEcCCC
Confidence 999764
No 112
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.77 E-value=5.2e-19 Score=137.29 Aligned_cols=84 Identities=21% Similarity=0.415 Sum_probs=77.4
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEE--EEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCC----CCCCCC
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVS--TRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGS----TLPGSK 207 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~--v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~----~~~g~~ 207 (305)
...++|||+|||+++|+++|+++|++||.|.. |+|++|+ +|+++|||||+|.+. +|.+|++.|||. .|.|
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g-- 97 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG-- 97 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC--
Confidence 45678999999999999999999999999977 9999999 899999999999999 999999999999 9999
Q ss_pred ccEEEEeccCCCcC
Q psy4086 208 EPLLVKFADSGLKK 221 (305)
Q Consensus 208 ~~l~v~~a~~~~~~ 221 (305)
+.|+|++++....+
T Consensus 98 r~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 98 KTINVEFAKGSKRD 111 (131)
T ss_dssp CCCCCEECCCSCCC
T ss_pred EEEEEEECCCCCCC
Confidence 77999999875443
No 113
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.77 E-value=3.2e-18 Score=127.50 Aligned_cols=70 Identities=21% Similarity=0.392 Sum_probs=66.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHA 127 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~ 127 (305)
..++|||+|||+++++++|+++|++||.|.+|+|++++ +++++|||||+|.+.++|++|++.|||..+.+
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 83 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMP 83 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence 45789999999999999999999999999999999998 79999999999999999999999999887766
No 114
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=124.60 Aligned_cols=75 Identities=23% Similarity=0.409 Sum_probs=70.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
..++|||+|||.++++++|+++|++||.|.++++++++.+++++|||||+|.+.++|++|++.|||..+.++.++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 79 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 79 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 457899999999999999999999999999999999998999999999999999999999999999888877654
No 115
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.77 E-value=4.6e-19 Score=130.99 Aligned_cols=75 Identities=21% Similarity=0.313 Sum_probs=70.1
Q ss_pred CCCeEEEcCCCC------CCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccc-ee
Q psy4086 57 SKTNLYIRGLTQ------DTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHA-QM 129 (305)
Q Consensus 57 ~~~~l~V~~Lp~------~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~-~~ 129 (305)
..++|||+|||+ ++++++|+++|++||.|.+|+|++++.||+++|||||+|.+.++|++|++.|||..|.+ +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 457899999999 99999999999999999999999999999999999999999999999999999998887 65
Q ss_pred cc
Q psy4086 130 AR 131 (305)
Q Consensus 130 ~~ 131 (305)
++
T Consensus 85 l~ 86 (100)
T 3ns6_A 85 LF 86 (100)
T ss_dssp CE
T ss_pred EE
Confidence 44
No 116
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.77 E-value=1e-18 Score=123.55 Aligned_cols=73 Identities=14% Similarity=0.252 Sum_probs=69.1
Q ss_pred CCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEecc
Q psy4086 137 PTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFAD 216 (305)
Q Consensus 137 ~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~ 216 (305)
...|||+||++.+||++|+++|.+||+|.++++.. +||||||+|.+.++|++|++.||+..+.| ++|+|++|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~g--r~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLAN--TTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETT--EEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECC--cEEEEEECC
Confidence 56799999999999999999999999999999974 69999999999999999999999999999 789999985
No 117
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.77 E-value=1.8e-18 Score=133.76 Aligned_cols=78 Identities=28% Similarity=0.421 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceeccc
Q psy4086 55 QLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQ 132 (305)
Q Consensus 55 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~ 132 (305)
....++|||+|||+++++++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|++|++.|||..|.++.++.
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 334577999999999999999999999999999999999999999999999999999999999999998888776553
No 118
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.77 E-value=2e-18 Score=126.34 Aligned_cols=78 Identities=15% Similarity=0.207 Sum_probs=71.0
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCC--CCCCCccEEE
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGST--LPGSKEPLLV 212 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~--~~g~~~~l~v 212 (305)
.+.++|||+|||+++|+++|+++|++||.|++|++++ .||||||+|++.++|.+|++.|++.. |.| ++|+|
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~AFVef~~~~~A~~Av~~ln~~~~~i~G--r~i~V 91 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-----KKRQALVEFEDVLGACNAVNYAADNQIYIAG--HPAFV 91 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCEEETT--EEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-----CCCEEEEEECCHHHHHHHHHHhcCCCceeCC--cEEEE
Confidence 4567899999999999999999999999999999984 47899999999999999999999886 678 88999
Q ss_pred EeccCCC
Q psy4086 213 KFADSGL 219 (305)
Q Consensus 213 ~~a~~~~ 219 (305)
.|++.++
T Consensus 92 ~~S~~k~ 98 (100)
T 3r27_A 92 NYSTSQK 98 (100)
T ss_dssp EECSCSC
T ss_pred Eeccccc
Confidence 9998753
No 119
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=128.96 Aligned_cols=84 Identities=17% Similarity=0.311 Sum_probs=75.0
Q ss_pred cCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEE
Q psy4086 134 EQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVK 213 (305)
Q Consensus 134 ~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~ 213 (305)
....++|||+|||+++++++|+++|++||.| +++.+.++.++|||||+|.+.++|++||+.||+..|.+ +.|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~ 86 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEG--RAIRLE 86 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETT--EEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCC--eEEEEE
Confidence 3456899999999999999999999999976 56777788999999999999999999999999999999 779999
Q ss_pred eccCCCcCC
Q psy4086 214 FADSGLKKR 222 (305)
Q Consensus 214 ~a~~~~~~~ 222 (305)
+++.+...+
T Consensus 87 ~a~~~~~~~ 95 (101)
T 2fc9_A 87 LQGPRGSPN 95 (101)
T ss_dssp ECSSCCCCC
T ss_pred EcCCCCCCC
Confidence 998865443
No 120
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.1e-18 Score=129.78 Aligned_cols=84 Identities=25% Similarity=0.436 Sum_probs=78.5
Q ss_pred CCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q psy4086 136 DPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKF 214 (305)
Q Consensus 136 ~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~ 214 (305)
..++|||+|||.++++++|+++|+.||.|..++|+.++ ++.++|||||+|.+.++|++|++.|||..|.| +.|+|++
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~ 84 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSG--RALRVDN 84 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSS--SCBEEEE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC--cEEEEEe
Confidence 34789999999999999999999999999999999997 88999999999999999999999999999999 7799999
Q ss_pred ccCCCcC
Q psy4086 215 ADSGLKK 221 (305)
Q Consensus 215 a~~~~~~ 221 (305)
+.....+
T Consensus 85 a~~~~~~ 91 (104)
T 1p1t_A 85 AASEKNK 91 (104)
T ss_dssp TTCTTHH
T ss_pred CCCccch
Confidence 9986654
No 121
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.77 E-value=4.9e-19 Score=130.83 Aligned_cols=81 Identities=21% Similarity=0.271 Sum_probs=75.4
Q ss_pred CCceEEecCCC------CCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCcc
Q psy4086 137 PTNLYIANLPL------NFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEP 209 (305)
Q Consensus 137 ~~~l~V~nlp~------~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~ 209 (305)
.++|||+|||+ ++++++|+++|++||.|.+|+|+.++ +|+++|||||+|.+.++|++||+.|||..|.|. +.
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~-r~ 84 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK-HR 84 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS-CB
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC-eE
Confidence 57899999999 99999999999999999999999998 699999999999999999999999999999982 45
Q ss_pred EEEEeccCC
Q psy4086 210 LLVKFADSG 218 (305)
Q Consensus 210 l~v~~a~~~ 218 (305)
|+|.++.+.
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999998764
No 122
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.77 E-value=1.3e-18 Score=125.05 Aligned_cols=75 Identities=20% Similarity=0.511 Sum_probs=66.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceec
Q psy4086 55 QLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMA 130 (305)
Q Consensus 55 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~ 130 (305)
+...++|||+|||+++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++|++. ++..|.++.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i 82 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVI 82 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999975 5555555544
No 123
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.77 E-value=1.9e-18 Score=124.62 Aligned_cols=80 Identities=19% Similarity=0.319 Sum_probs=75.4
Q ss_pred CCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q psy4086 136 DPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKF 214 (305)
Q Consensus 136 ~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~ 214 (305)
+.++|||+|||.++++++|+++|++||.|.+++++.++ ++.++|||||+|.+.++|++|+ .|||..|.| +.|+|.+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g--~~l~V~~ 81 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRG--RQIKVIP 81 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETT--EECEEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECC--cEEEEEE
Confidence 35789999999999999999999999999999999997 8899999999999999999999 999999999 7799999
Q ss_pred ccCC
Q psy4086 215 ADSG 218 (305)
Q Consensus 215 a~~~ 218 (305)
++..
T Consensus 82 a~~~ 85 (89)
T 3ucg_A 82 KRTN 85 (89)
T ss_dssp TTTT
T ss_pred ccCC
Confidence 8763
No 124
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.9e-18 Score=127.99 Aligned_cols=75 Identities=32% Similarity=0.572 Sum_probs=69.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
..++|||+|||+++++++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|++|++.||+..|.++.++
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIR 85 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 457899999999999999999999999999999999999999999999999999999999999998887766554
No 125
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.77 E-value=4.5e-18 Score=126.28 Aligned_cols=79 Identities=24% Similarity=0.376 Sum_probs=72.4
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKF 214 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~ 214 (305)
...++|||+|||+++++++|+++|++||.|..|+|+ ++||||+|.+.++|++|++.||+..|.+ +.|+|.+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~ 79 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEMNGKDLEG--ENIEIVF 79 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESSHHHHHHHHHHHTTEEETT--EEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEeCCHHHHHHHHHHHCCCccCC--CEEEEEE
Confidence 346889999999999999999999999999999987 4599999999999999999999999999 7899999
Q ss_pred ccCCCcCC
Q psy4086 215 ADSGLKKR 222 (305)
Q Consensus 215 a~~~~~~~ 222 (305)
+..+..+.
T Consensus 80 a~~~~~~~ 87 (103)
T 2dgu_A 80 AKPPDQKR 87 (103)
T ss_dssp CCCCCCCC
T ss_pred cCCCcccc
Confidence 99876654
No 126
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.77 E-value=2.3e-19 Score=130.17 Aligned_cols=73 Identities=22% Similarity=0.296 Sum_probs=65.2
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhccC-CeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHh-ccCcccceecc
Q psy4086 59 TNLYIRGLTQDTTDKDLINMCSQYG-PIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKAL-QDKGIHAQMAR 131 (305)
Q Consensus 59 ~~l~V~~Lp~~~t~~~L~~~f~~~G-~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l-~g~~i~~~~~~ 131 (305)
.+|||+|||+++||++|+++|++|| +|.+|+|++|+.+|+++|||||+|.+.++|++|++.+ ++..+.++.++
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~ 76 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVS 76 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEE
Confidence 5699999999999999999999999 8999999999999999999999999999999999876 34455555444
No 127
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.1e-18 Score=131.42 Aligned_cols=85 Identities=9% Similarity=0.157 Sum_probs=76.9
Q ss_pred cCCCCceEEecCCCCCCHHHHH---HHHhhCCCeEEEEEeeCC-CC---CcccEEEEEecCHHHHHHHHHHhCCCCCCCC
Q psy4086 134 EQDPTNLYIANLPLNFKECDLE---SLLAKYVTVVSTRILRDN-NN---TSKGVGFARLESKDKCDQMIQLFNGSTLPGS 206 (305)
Q Consensus 134 ~~~~~~l~V~nlp~~~te~~l~---~~F~~~g~v~~v~i~~~~-~g---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 206 (305)
....++|||+|||+++++++|+ ++|++||.|.+|.|+.++ ++ .++|||||+|.+.++|++||+.|||..|.|
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g- 90 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG- 90 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT-
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC-
Confidence 3456899999999999999999 999999999999999887 33 566999999999999999999999999999
Q ss_pred CccEEEEeccCCCc
Q psy4086 207 KEPLLVKFADSGLK 220 (305)
Q Consensus 207 ~~~l~v~~a~~~~~ 220 (305)
+.|+|.++..+..
T Consensus 91 -r~l~V~~a~~k~~ 103 (111)
T 2cpi_A 91 -RTLKASLGTTKYC 103 (111)
T ss_dssp -EEEEEESCCCCSC
T ss_pred -EEEEEEecccccc
Confidence 7899999988653
No 128
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.77 E-value=9.9e-19 Score=129.36 Aligned_cols=83 Identities=25% Similarity=0.334 Sum_probs=70.3
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc-----cc
Q psy4086 59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR-----QQ 133 (305)
Q Consensus 59 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~-----~~ 133 (305)
++|||+|||+++|+++|+++|++||+|.+|.++.+ ++|||||+|.+.++|++|++.|||..+.++.++ ..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 57999999999999999999999999999999987 688999999999999999999887766655444 11
Q ss_pred c------------CCCCceEEecCC
Q psy4086 134 E------------QDPTNLYIANLP 146 (305)
Q Consensus 134 ~------------~~~~~l~V~nlp 146 (305)
. ....+||||||+
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCC
Confidence 1 114679999986
No 129
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.77 E-value=1.8e-18 Score=129.02 Aligned_cols=77 Identities=21% Similarity=0.360 Sum_probs=69.4
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcc---cceecc
Q psy4086 55 QLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGI---HAQMAR 131 (305)
Q Consensus 55 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i---~~~~~~ 131 (305)
+...++|||+|||+++++++|+++|++||+|.+|+|+.++.+++++|||||+|.+.++|++|++.|||..+ .++.++
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 34557899999999999999999999999999999999999999999999999999999999999998776 444443
No 130
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.9e-18 Score=127.28 Aligned_cols=78 Identities=21% Similarity=0.396 Sum_probs=68.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHH---hccCcccceecc
Q psy4086 55 QLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA---LQDKGIHAQMAR 131 (305)
Q Consensus 55 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~---l~g~~i~~~~~~ 131 (305)
....++|||+|||+++++++|+++|++||.|.+|+|+.++.+++++|||||+|.+.++|++|++. |+|+.|.++++.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~v~~a~ 91 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPN 91 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEEECCC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHcCCeeCCeEEEEEecC
Confidence 34457799999999999999999999999999999999999999999999999999999999996 556666665554
Q ss_pred c
Q psy4086 132 Q 132 (305)
Q Consensus 132 ~ 132 (305)
.
T Consensus 92 ~ 92 (103)
T 2cqg_A 92 S 92 (103)
T ss_dssp T
T ss_pred C
Confidence 3
No 131
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.77 E-value=1.7e-18 Score=122.38 Aligned_cols=82 Identities=21% Similarity=0.314 Sum_probs=70.8
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecccccCCC
Q psy4086 58 KTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDP 137 (305)
Q Consensus 58 ~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~~~~~~ 137 (305)
...|||+||++.+||++|+++|.+||+|.+++++. +||||||+|.++++|++|++.||+..+.++.++...
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~--- 77 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAES--- 77 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC---
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEE---
Confidence 46699999999999999999999999999999865 689999999999999999999999998887654221
Q ss_pred CceEEecCCCCCCHHHHHHHHh
Q psy4086 138 TNLYIANLPLNFKECDLESLLA 159 (305)
Q Consensus 138 ~~l~V~nlp~~~te~~l~~~F~ 159 (305)
.+|+++..+|+
T Consensus 78 -----------A~e~~~~~~~~ 88 (89)
T 2wbr_A 78 -----------PSENEVQSIMQ 88 (89)
T ss_dssp -----------CCHHHHHHHHC
T ss_pred -----------CCHHHHHHHhh
Confidence 26777777764
No 132
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.76 E-value=2.1e-18 Score=126.00 Aligned_cols=76 Identities=17% Similarity=0.288 Sum_probs=70.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 55 QLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 55 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
+...++|||+|||+++++++|+++|++||+|.+|+|++++. ++++|||||+|.+.++|++|++.|||..|.++.++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPIN 88 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEE
Confidence 34557899999999999999999999999999999999985 99999999999999999999999999988887665
No 133
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.5e-18 Score=127.80 Aligned_cols=76 Identities=25% Similarity=0.441 Sum_probs=70.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
...++|||+|||+++|+++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|++|++.|||..|.++.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLH 81 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 3457899999999999999999999999999999999998999999999999999999999999998887776654
No 134
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.3e-18 Score=128.44 Aligned_cols=76 Identities=25% Similarity=0.442 Sum_probs=70.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
...++|||+|||+++++++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++|++.|||..|.++.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 96 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 96 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEE
Confidence 3457899999999999999999999999999999999999999999999999999999999999999888776554
No 135
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.76 E-value=2.2e-18 Score=122.67 Aligned_cols=73 Identities=29% Similarity=0.491 Sum_probs=69.3
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 59 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
++|||+|||+++++++|+++|++||.|.++.+++++.+++++|||||+|.+.++|++|++.|||..+.++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 74 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLR 74 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 5799999999999999999999999999999999998999999999999999999999999999988877665
No 136
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.76 E-value=6.6e-18 Score=132.32 Aligned_cols=81 Identities=32% Similarity=0.521 Sum_probs=73.3
Q ss_pred CCCCCCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceec
Q psy4086 51 TGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMA 130 (305)
Q Consensus 51 ~~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~ 130 (305)
...+....++|||+|||+++++++|+++|+.||+|++|+|++++.+++++|||||+|.+.++|++|++.|||..|.++.+
T Consensus 35 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 114 (139)
T 1u6f_A 35 MNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRL 114 (139)
T ss_dssp SSCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEE
T ss_pred cCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 34455567889999999999999999999999999999999999999999999999999999999999999888777655
Q ss_pred c
Q psy4086 131 R 131 (305)
Q Consensus 131 ~ 131 (305)
+
T Consensus 115 ~ 115 (139)
T 1u6f_A 115 K 115 (139)
T ss_dssp E
T ss_pred E
Confidence 4
No 137
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.4e-18 Score=126.31 Aligned_cols=86 Identities=21% Similarity=0.340 Sum_probs=77.2
Q ss_pred ccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEE
Q psy4086 133 QEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLL 211 (305)
Q Consensus 133 ~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~ 211 (305)
.....++|||+|||+++++++|+++|++||.|..|+|+.++ ++.++|||||+|.+.++|++||+ ++..|.| +.|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g--~~l~ 86 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDG--RWCD 86 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETT--EEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCC--eEEE
Confidence 34456889999999999999999999999999999999997 79999999999999999999998 4678999 7799
Q ss_pred EEeccCCCcCC
Q psy4086 212 VKFADSGLKKR 222 (305)
Q Consensus 212 v~~a~~~~~~~ 222 (305)
|+++..+....
T Consensus 87 v~~a~~~~~~~ 97 (103)
T 2cqg_A 87 CKLPNSKQSQD 97 (103)
T ss_dssp EECCCTTCCCC
T ss_pred EEecCCCCcCC
Confidence 99998865543
No 138
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=5.7e-18 Score=125.72 Aligned_cols=81 Identities=16% Similarity=0.213 Sum_probs=72.0
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCC--CCCCCCccEEE
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGS--TLPGSKEPLLV 212 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~--~~~g~~~~l~v 212 (305)
...++|||+|||+++++++|+++|++||.|.+|.|+.+ ||||||+|.+.++|.+|++.|++. .|.| ++|+|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~G--r~l~V 85 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVYIAG--QQAFF 85 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCBSSS--SBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECC--EEEEE
Confidence 34578999999999999999999999999999998853 789999999999999999998765 4888 77999
Q ss_pred EeccCCCcCC
Q psy4086 213 KFADSGLKKR 222 (305)
Q Consensus 213 ~~a~~~~~~~ 222 (305)
.|++.+..++
T Consensus 86 ~~a~~~~~~~ 95 (104)
T 1wex_A 86 NYSTSKRITR 95 (104)
T ss_dssp EECSSSSCCC
T ss_pred EEccCccccC
Confidence 9998866554
No 139
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=2.6e-18 Score=125.55 Aligned_cols=75 Identities=24% Similarity=0.433 Sum_probs=69.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
..++|||+|||+++++++|+++|++||+|.+|++++++.+++++|||||+|.+.++|++|++.|||..|.++.++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 78 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMR 78 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 347799999999999999999999999999999999999999999999999999999999999998887776654
No 140
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.76 E-value=8e-19 Score=133.64 Aligned_cols=80 Identities=28% Similarity=0.487 Sum_probs=74.8
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEE
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVK 213 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~ 213 (305)
...++|||+|||+++++++|+++|++||.|.+|+|+.++ ++.++|||||+|.+.++|++|++.|||..|.| +.|+|+
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~V~ 115 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGT--KRLKVQ 115 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETT--EECCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECC--EEEEEE
Confidence 345889999999999999999999999999999999997 78999999999999999999999999999999 779999
Q ss_pred ecc
Q psy4086 214 FAD 216 (305)
Q Consensus 214 ~a~ 216 (305)
|++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 974
No 141
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.76 E-value=4.1e-18 Score=127.64 Aligned_cols=77 Identities=23% Similarity=0.434 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceeccc
Q psy4086 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQ 132 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~ 132 (305)
...++|||+|||+++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++|++.|||..|.++.++.
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34578999999999999999999999999999999999989999999999999999999999999998888776653
No 142
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.76 E-value=1.2e-18 Score=121.69 Aligned_cols=74 Identities=19% Similarity=0.363 Sum_probs=70.3
Q ss_pred ceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEec
Q psy4086 139 NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFA 215 (305)
Q Consensus 139 ~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a 215 (305)
+|||+|||+++++++|+++|++||.|.+++++.++ ++.++|||||+|.+.++|++|++ ||+..|.| +.|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g--~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINN--KMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSS--CCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECC--EEEEEEeC
Confidence 58999999999999999999999999999999998 88999999999999999999997 99999999 67999885
No 143
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.8e-18 Score=128.26 Aligned_cols=77 Identities=18% Similarity=0.229 Sum_probs=69.3
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 53 PEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 53 ~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
.++...++|||+|||+++|+++|+++|++||+|.+|.|++++. |+++|||||+|.+.++|++|++ +|+..+.++.+.
T Consensus 6 ~~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~ 82 (103)
T 1s79_A 6 KNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLL 82 (103)
T ss_dssp SSCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCE
T ss_pred cccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEE
Confidence 4455668899999999999999999999999999999999987 9999999999999999999999 888777766543
No 144
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=4e-18 Score=128.24 Aligned_cols=76 Identities=18% Similarity=0.353 Sum_probs=70.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhc------cCccccee
Q psy4086 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQ------DKGIHAQM 129 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~------g~~i~~~~ 129 (305)
...++|||+|||+++|+++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++|++.|| +..|.++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 345779999999999999999999999999999999999999999999999999999999999999 88877766
Q ss_pred cc
Q psy4086 130 AR 131 (305)
Q Consensus 130 ~~ 131 (305)
++
T Consensus 93 l~ 94 (111)
T 1x4h_A 93 LK 94 (111)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 145
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.9e-18 Score=127.03 Aligned_cols=76 Identities=28% Similarity=0.462 Sum_probs=69.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 55 QLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 55 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
+...++|||+|||+++++++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|++|++. |+..|.++.++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~ 88 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNID 88 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999998 88777776655
No 146
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.5e-18 Score=127.37 Aligned_cols=84 Identities=20% Similarity=0.358 Sum_probs=75.0
Q ss_pred cCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEE
Q psy4086 134 EQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLV 212 (305)
Q Consensus 134 ~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v 212 (305)
....++|||+|||.++++++|+++|+.|+ .|+++.++ ++.++|||||+|.+.++|++||+.||+..|.+ +.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~V 86 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDG--NKVTL 86 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT--EECEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECC--eEEEE
Confidence 44568999999999999999999999773 77888887 88999999999999999999999999999999 77999
Q ss_pred EeccCCCcCC
Q psy4086 213 KFADSGLKKR 222 (305)
Q Consensus 213 ~~a~~~~~~~ 222 (305)
++++.+..+.
T Consensus 87 ~~a~~~~~~~ 96 (102)
T 2fc8_A 87 DWAKPKGEGG 96 (102)
T ss_dssp EECCCCCSSS
T ss_pred EEecCCCCCC
Confidence 9998865543
No 147
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=4.3e-18 Score=127.51 Aligned_cols=83 Identities=16% Similarity=0.244 Sum_probs=73.8
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCC---ccEE
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSK---EPLL 211 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~---~~l~ 211 (305)
...++|||+|||+++++++|+++|++||.|+.|+|+.+ +||||+|.+.++|++||+.||+..|.+.. +.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 45689999999999999999999999999999999865 79999999999999999999999998822 5599
Q ss_pred EEeccCCCcCCC
Q psy4086 212 VKFADSGLKKRG 223 (305)
Q Consensus 212 v~~a~~~~~~~~ 223 (305)
|+++..+...+.
T Consensus 87 V~~a~~~~~~~~ 98 (108)
T 1x4c_A 87 VKVDGPRSPSYG 98 (108)
T ss_dssp EEESSCCSCCCC
T ss_pred EEeCCCCCCCCC
Confidence 999998665543
No 148
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.5e-18 Score=126.82 Aligned_cols=75 Identities=27% Similarity=0.472 Sum_probs=68.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 55 QLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 55 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
....++|||+|||+++|+++|+++|++||.|.+|+|+.+ ++.++|||||+|.+.++|++|++.|||..|.++.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 86 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 345678999999999999999999999999999999998 799999999999999999999999998887766554
No 149
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.2e-18 Score=127.01 Aligned_cols=73 Identities=19% Similarity=0.278 Sum_probs=68.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCee-EEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCccccee
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPII-STKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQM 129 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~-~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~ 129 (305)
..++|||+|||+++++++|+++|++||+|. +|+|++++.+++++|||||+|.+.++|++|++.|||..+.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGAT 81 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCS
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCC
Confidence 347899999999999999999999999999 9999999999999999999999999999999999998887765
No 150
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.76 E-value=2.6e-18 Score=133.30 Aligned_cols=76 Identities=21% Similarity=0.335 Sum_probs=69.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhccCCeeE--EEEeeCCCCCCccceEEEEecchhhHHHHHHHhccC----ccccee
Q psy4086 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIIS--TKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDK----GIHAQM 129 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~--~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~----~i~~~~ 129 (305)
...++|||+|||+++|+++|+++|++||.|.. |+|++|+.+|+++|||||+|.+. +|.+|++.|||. .|.++.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 34577999999999999999999999999976 99999999999999999999999 999999999999 888776
Q ss_pred ccc
Q psy4086 130 ARQ 132 (305)
Q Consensus 130 ~~~ 132 (305)
++.
T Consensus 100 l~V 102 (131)
T 2m2b_A 100 INV 102 (131)
T ss_dssp CCC
T ss_pred EEE
Confidence 653
No 151
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.9e-18 Score=130.13 Aligned_cols=77 Identities=31% Similarity=0.437 Sum_probs=69.2
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 54 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
++...++|||+|||+++|+++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++|++.+++ .|.++.++
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 344568899999999999999999999999999999999999999999999999999999999999886 56655544
No 152
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.4e-18 Score=128.19 Aligned_cols=79 Identities=11% Similarity=0.241 Sum_probs=70.9
Q ss_pred CCCCceEEecCCC-CCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCC--CCCCCccEE
Q psy4086 135 QDPTNLYIANLPL-NFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGST--LPGSKEPLL 211 (305)
Q Consensus 135 ~~~~~l~V~nlp~-~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~--~~g~~~~l~ 211 (305)
.+.++|||+|||+ ++++++|+++|++||.|.+|.|+++ ++||||+|++.++|++||+.||+.. |.| ++|+
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G--r~l~ 85 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFG--KPVR 85 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETT--EECE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECC--cEEE
Confidence 3567899999999 9999999999999999999999865 6899999999999999999998754 888 8899
Q ss_pred EEeccCCCc
Q psy4086 212 VKFADSGLK 220 (305)
Q Consensus 212 v~~a~~~~~ 220 (305)
|.|+.....
T Consensus 86 V~~a~~~~~ 94 (102)
T 1x4d_A 86 VHLSQKYKR 94 (102)
T ss_dssp EEEECCCTT
T ss_pred EEECCCCCC
Confidence 999986443
No 153
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.8e-18 Score=128.14 Aligned_cols=75 Identities=32% Similarity=0.522 Sum_probs=70.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
..++|||+|||+++++++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|++|++.|||..|.++.++
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 85 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 457799999999999999999999999999999999998999999999999999999999999998888777665
No 154
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.76 E-value=2.6e-18 Score=125.83 Aligned_cols=75 Identities=24% Similarity=0.583 Sum_probs=70.6
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceeccc
Q psy4086 58 KTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQ 132 (305)
Q Consensus 58 ~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~ 132 (305)
.++|||+|||.++++++|+++|++||.|.+|+|+.++.+|+++|||||+|.+.++|++|++.|||..|.++.++.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 76 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKC 76 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 467999999999999999999999999999999999989999999999999999999999999999888877653
No 155
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.2e-18 Score=127.98 Aligned_cols=82 Identities=20% Similarity=0.410 Sum_probs=73.6
Q ss_pred cCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCC--CCCCCCCccEE
Q psy4086 134 EQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNG--STLPGSKEPLL 211 (305)
Q Consensus 134 ~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g--~~~~g~~~~l~ 211 (305)
....++|||+|||++++|++|+++|++||.|++|+|+.+ ||||||+|++.++|++|++.|++ ..|.| ++|+
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G--r~l~ 100 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRG--QPIY 100 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTT--BCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECC--eEEE
Confidence 345688999999999999999999999999999999965 79999999999999999999874 68999 7899
Q ss_pred EEeccCCCcCC
Q psy4086 212 VKFADSGLKKR 222 (305)
Q Consensus 212 v~~a~~~~~~~ 222 (305)
|.|++.+..+.
T Consensus 101 V~~a~~k~~~~ 111 (119)
T 2ad9_A 101 IQFSNHKELKT 111 (119)
T ss_dssp EEECSSSSCCC
T ss_pred EEEccCCCCCc
Confidence 99998876654
No 156
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.4e-18 Score=123.97 Aligned_cols=81 Identities=21% Similarity=0.322 Sum_probs=76.1
Q ss_pred cCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEE
Q psy4086 134 EQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVK 213 (305)
Q Consensus 134 ~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~ 213 (305)
....++|||+|||+++++++|+++|+.| .|.+|+|+.+.+|+++|||||+|.+.++|++|++ ||+..|.| +.|+|.
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~g--r~i~v~ 82 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGG--RYIEVF 82 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETT--EEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCC--cEEEEE
Confidence 3456899999999999999999999999 9999999999889999999999999999999999 99999999 779999
Q ss_pred eccCC
Q psy4086 214 FADSG 218 (305)
Q Consensus 214 ~a~~~ 218 (305)
++..+
T Consensus 83 ~a~~~ 87 (91)
T 2dgw_A 83 REKSG 87 (91)
T ss_dssp EESSC
T ss_pred ECCcC
Confidence 98875
No 157
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=4.4e-18 Score=125.85 Aligned_cols=78 Identities=18% Similarity=0.369 Sum_probs=72.7
Q ss_pred CceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEeccC
Q psy4086 138 TNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADS 217 (305)
Q Consensus 138 ~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~~ 217 (305)
++|||+|||.++++++|+++|++||.|.+|+++.+ ++|||||+|.+.++|++|++.|||..+.| +.|+|+++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICG--SRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSS--CCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECC--cEEEEEEccC
Confidence 47999999999999999999999999999999976 68999999999999999999999999999 6699999998
Q ss_pred CCcC
Q psy4086 218 GLKK 221 (305)
Q Consensus 218 ~~~~ 221 (305)
...+
T Consensus 75 ~~~~ 78 (101)
T 2hvz_A 75 MPRR 78 (101)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 6644
No 158
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.6e-18 Score=127.44 Aligned_cols=75 Identities=20% Similarity=0.250 Sum_probs=70.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
..++|||+|||+++++++|+++|++||.|.+++++.++.+++++|||||+|.+.++|++|++.|||..|.++.++
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 88 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVK 88 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 347799999999999999999999999999999999998999999999999999999999999999988887765
No 159
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.9e-18 Score=126.32 Aligned_cols=83 Identities=10% Similarity=0.158 Sum_probs=75.7
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEE-EEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEE
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVS-TRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVK 213 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~-v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~ 213 (305)
...++|||+|||+++++++|+++|+.||.|.+ |+|+.+.+|+++|||||+|.+.++|++||+. |+..|.+ +.|+|.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~g--r~i~v~ 89 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGH--RYIEIF 89 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSS--SCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCC--cEEEEE
Confidence 45688999999999999999999999999987 8898888899999999999999999999997 9999999 679999
Q ss_pred eccCCCc
Q psy4086 214 FADSGLK 220 (305)
Q Consensus 214 ~a~~~~~ 220 (305)
++.....
T Consensus 90 ~~~~~~~ 96 (104)
T 1wg5_A 90 KSSRAEV 96 (104)
T ss_dssp EECTTTS
T ss_pred ECCHHHH
Confidence 9876543
No 160
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.4e-17 Score=125.84 Aligned_cols=77 Identities=30% Similarity=0.452 Sum_probs=71.0
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 54 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
++...++|||+|||+++|+++|+++|+.||.|.+|+|++++ +++++|||||+|.+.++|++|++.|||+.|.++.+.
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~ 97 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGV 97 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccc
Confidence 34456889999999999999999999999999999999999 899999999999999999999999999999776554
No 161
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.75 E-value=3.2e-18 Score=128.42 Aligned_cols=86 Identities=16% Similarity=0.267 Sum_probs=75.1
Q ss_pred ccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEE
Q psy4086 133 QEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLL 211 (305)
Q Consensus 133 ~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~ 211 (305)
.....++|||+|||.++++++|+++|+.||.|.+|+|+.++ +|.++|||||+|.+.++|++||+.+ +..|.| +.|+
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g--~~l~ 97 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDS--KTID 97 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETT--EEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCC--EEEE
Confidence 34456899999999999999999999999999999999998 7899999999999999999999976 488999 7799
Q ss_pred EEeccCCCcC
Q psy4086 212 VKFADSGLKK 221 (305)
Q Consensus 212 v~~a~~~~~~ 221 (305)
|+++..+..+
T Consensus 98 V~~a~~~~~~ 107 (109)
T 2rs2_A 98 PKVAFPRRAQ 107 (109)
T ss_dssp EEECCCCCCC
T ss_pred EEEccCCCCC
Confidence 9999875543
No 162
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.3e-19 Score=133.41 Aligned_cols=82 Identities=21% Similarity=0.384 Sum_probs=76.6
Q ss_pred CCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEec
Q psy4086 137 PTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFA 215 (305)
Q Consensus 137 ~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a 215 (305)
.++|||+|||+++++++|+++|+.||.|..|+|+.++ ++.++|||||+|.+.++|++|| .||+..|.| +.|+|+++
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g--~~l~V~~a 101 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLG--VPIIVQAS 101 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETT--EEEEEEEH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCC--eEEEEEec
Confidence 4789999999999999999999999999999999998 6899999999999999999999 999999999 77999999
Q ss_pred cCCCcC
Q psy4086 216 DSGLKK 221 (305)
Q Consensus 216 ~~~~~~ 221 (305)
..+..+
T Consensus 102 ~~~~~~ 107 (114)
T 2cq4_A 102 QAEKNR 107 (114)
T ss_dssp HHHHHH
T ss_pred CCCccC
Confidence 875544
No 163
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=9.6e-19 Score=128.66 Aligned_cols=82 Identities=15% Similarity=0.283 Sum_probs=75.6
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEE
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVK 213 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~ 213 (305)
...++|||+|||+++++++|+++|++||.|..+.++.++ ++.++|||||+|.+.++|++|++.|||..|.| +.|+|+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g--~~l~V~ 90 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS--RKVKLV 90 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETT--EECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCC--eEEEEE
Confidence 345789999999999999999999999999988888876 88999999999999999999999999999999 779999
Q ss_pred eccCC
Q psy4086 214 FADSG 218 (305)
Q Consensus 214 ~a~~~ 218 (305)
++..+
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98764
No 164
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.75 E-value=3.6e-18 Score=122.73 Aligned_cols=80 Identities=23% Similarity=0.391 Sum_probs=73.4
Q ss_pred ccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEE
Q psy4086 133 QEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLL 211 (305)
Q Consensus 133 ~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~ 211 (305)
.....++|||+|||+++++++|+++|++||.|.+|+|+.++ ++.++|||||+|.+.++|++|++ +++..|.| +.|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g--~~i~ 83 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDG--RVID 83 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETT--EEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECC--EEEE
Confidence 34567899999999999999999999999999999999997 79999999999999999999996 57888999 7799
Q ss_pred EEec
Q psy4086 212 VKFA 215 (305)
Q Consensus 212 v~~a 215 (305)
|++|
T Consensus 84 v~~A 87 (87)
T 3s7r_A 84 PKKA 87 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9886
No 165
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.5e-18 Score=128.45 Aligned_cols=78 Identities=28% Similarity=0.389 Sum_probs=71.7
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhccCCee--------EEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcc
Q psy4086 54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPII--------STKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGI 125 (305)
Q Consensus 54 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~--------~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i 125 (305)
+....++|||+|||+++|+++|+++|++||.|. .|+|+.++.+++++|||||+|.+.++|++|++.|||..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 344568899999999999999999999999999 699999988999999999999999999999999999988
Q ss_pred cceecc
Q psy4086 126 HAQMAR 131 (305)
Q Consensus 126 ~~~~~~ 131 (305)
.++.++
T Consensus 91 ~g~~l~ 96 (113)
T 2cpe_A 91 QGSKLK 96 (113)
T ss_dssp TTEECE
T ss_pred CCCEEE
Confidence 877665
No 166
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.6e-18 Score=124.63 Aligned_cols=81 Identities=19% Similarity=0.334 Sum_probs=72.5
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhC--CCCCCCCCccEEE
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFN--GSTLPGSKEPLLV 212 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~--g~~~~g~~~~l~v 212 (305)
...++|||+|||+++++++|+++|++||.|.+|.|+.+ ||||||+|.+.++|++|++.|+ +..|.| ++|+|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G--r~l~V 85 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRN--QPIYI 85 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETT--EECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECC--cEEEE
Confidence 45678999999999999999999999999999998854 8999999999999999999875 567899 88999
Q ss_pred EeccCCCcCC
Q psy4086 213 KFADSGLKKR 222 (305)
Q Consensus 213 ~~a~~~~~~~ 222 (305)
.|++.+..+.
T Consensus 86 ~~a~~~~~~~ 95 (101)
T 2cq1_A 86 QYSNHKELKT 95 (101)
T ss_dssp EECSCSSCCC
T ss_pred EEcCcccCcC
Confidence 9999866654
No 167
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=6.6e-18 Score=122.68 Aligned_cols=80 Identities=18% Similarity=0.367 Sum_probs=72.6
Q ss_pred cCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEE
Q psy4086 134 EQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVK 213 (305)
Q Consensus 134 ~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~ 213 (305)
....++|||+|||.++++++|+++|++||.|.+|++++ +||||+|.+.++|++|++.||+..|.+ +.|+|+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~V~ 77 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK-------DYAFVHMERAEDAVEAIRGLDNTEFQG--KRMHVQ 77 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS-------SEEEEEESCHHHHHHHHHHHTTEEETT--EEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC-------CEEEEEECCHHHHHHHHHHhCCCeeCC--cEEEEE
Confidence 44568899999999999999999999999999999983 499999999999999999999999999 779999
Q ss_pred eccCCCcCC
Q psy4086 214 FADSGLKKR 222 (305)
Q Consensus 214 ~a~~~~~~~ 222 (305)
++..+....
T Consensus 78 ~a~~~~~~~ 86 (92)
T 2dgt_A 78 LSTSRLRTA 86 (92)
T ss_dssp ESSCCCSCC
T ss_pred EccCCCCCC
Confidence 998865544
No 168
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=9.7e-18 Score=125.70 Aligned_cols=85 Identities=18% Similarity=0.260 Sum_probs=76.7
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCC-eEEEEEe-eCC-CCCcccEEEEEecCHHHHHHHHHHhC--CCCCCCCCcc
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVT-VVSTRIL-RDN-NNTSKGVGFARLESKDKCDQMIQLFN--GSTLPGSKEP 209 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~-v~~v~i~-~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~--g~~~~g~~~~ 209 (305)
...++|||+|||+++++++|+++|++||. |.+|.++ .++ ++.++|||||+|.+.++|++|++.|| +..+.| +.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g--~~ 83 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQ 83 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT--BC
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecC--Ce
Confidence 45688999999999999999999999998 9999998 666 67999999999999999999999996 589999 77
Q ss_pred EEEEeccCCCcC
Q psy4086 210 LLVKFADSGLKK 221 (305)
Q Consensus 210 l~v~~a~~~~~~ 221 (305)
|+|.|++++...
T Consensus 84 l~V~~a~~~~~~ 95 (109)
T 2dis_A 84 IAVDWAEPEIDV 95 (109)
T ss_dssp CEEEESCSSCST
T ss_pred EEEEEcCCCCCc
Confidence 999999876543
No 169
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=7.2e-20 Score=139.09 Aligned_cols=86 Identities=16% Similarity=0.315 Sum_probs=79.0
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEE--------EEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCC
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVS--------TRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPG 205 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~--------v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 205 (305)
.+.++|||+|||.++++++|+++|++||.|.. |+|+.++ ++.++|||||+|.+.++|++|++.|||..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45688999999999999999999999999998 8999986 78999999999999999999999999999999
Q ss_pred CCccEEEEeccCCCcCC
Q psy4086 206 SKEPLLVKFADSGLKKR 222 (305)
Q Consensus 206 ~~~~l~v~~a~~~~~~~ 222 (305)
+.|+|+++..+..+.
T Consensus 85 --~~l~V~~a~~~~~~~ 99 (116)
T 2lcw_A 85 --NPIKVSFATRRADFN 99 (116)
Confidence 779999998865543
No 170
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.75 E-value=5.2e-18 Score=130.29 Aligned_cols=85 Identities=19% Similarity=0.386 Sum_probs=78.7
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKF 214 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~ 214 (305)
...++|||+|||.++++++|+++|++||.|.+|+|+.+++|.++|||||+|.+.++|++|++.|||..|.| +.|+|++
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~V~~ 110 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDG--RPMDIQL 110 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSS--CEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECC--cEEEEEE
Confidence 34578999999999999999999999999999999999888999999999999999999999999999999 7799999
Q ss_pred ccCCCcC
Q psy4086 215 ADSGLKK 221 (305)
Q Consensus 215 a~~~~~~ 221 (305)
|......
T Consensus 111 a~~~~~~ 117 (124)
T 2kt5_A 111 VASQIDL 117 (124)
T ss_dssp ECCTTCC
T ss_pred eCCCCCC
Confidence 9875443
No 171
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.75 E-value=1.5e-18 Score=135.04 Aligned_cols=85 Identities=12% Similarity=0.174 Sum_probs=77.7
Q ss_pred cccCCCCceEEecCCCCCCHHHHHHHHhhCCC---eEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCc
Q psy4086 132 QQEQDPTNLYIANLPLNFKECDLESLLAKYVT---VVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKE 208 (305)
Q Consensus 132 ~~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~---v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 208 (305)
......++|||+|||+++|+++|+++|+.||. |.+|+|+.+++|+++|||||+|.+.++|++||+ ||+..|.+ +
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~g--r 115 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGH--R 115 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSS--S
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECC--E
Confidence 44456788999999999999999999999999 899999999889999999999999999999999 99999999 7
Q ss_pred cEEEEeccCCC
Q psy4086 209 PLLVKFADSGL 219 (305)
Q Consensus 209 ~l~v~~a~~~~ 219 (305)
.|+|.++....
T Consensus 116 ~i~V~~a~~~e 126 (136)
T 2hgl_A 116 YIEVFKSHRTE 126 (136)
T ss_dssp EEEEEECCHHH
T ss_pred EEEEEECChHH
Confidence 79999986543
No 172
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=2e-18 Score=121.01 Aligned_cols=75 Identities=19% Similarity=0.351 Sum_probs=71.2
Q ss_pred CceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEec
Q psy4086 138 TNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFA 215 (305)
Q Consensus 138 ~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a 215 (305)
++|||+|||.++++++|+++|++||.|.++.++.++ ++.++|||||+|.+.++|++|++.++ ..+.| +.|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g--~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDS--KTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSS--CCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCC--EEEEEEec
Confidence 579999999999999999999999999999999997 78999999999999999999999999 99999 67999986
No 173
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=9.9e-18 Score=122.99 Aligned_cols=79 Identities=20% Similarity=0.294 Sum_probs=72.2
Q ss_pred cCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCC--CCCccEE
Q psy4086 134 EQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLP--GSKEPLL 211 (305)
Q Consensus 134 ~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~--g~~~~l~ 211 (305)
....++|||+|||.++++++|+++|++||.|++|.+..+ ++||||+|.+.++|++|++.||+..|. + +.|+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g--~~l~ 86 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPD--RRLR 86 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSS--CBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCC--cEEE
Confidence 345689999999999999999999999999999999854 789999999999999999999999999 7 7799
Q ss_pred EEeccCCC
Q psy4086 212 VKFADSGL 219 (305)
Q Consensus 212 v~~a~~~~ 219 (305)
|+|++++.
T Consensus 87 V~~a~~~~ 94 (97)
T 1why_A 87 VDFAKSGP 94 (97)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99998753
No 174
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.75 E-value=7e-18 Score=125.21 Aligned_cols=73 Identities=21% Similarity=0.330 Sum_probs=68.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
..++|||+|||+++++++|+++|++|| |.+|+|++++.+++++|||||+|.+.++|++|+ .|||..|.++.++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 86 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLR 86 (103)
T ss_dssp SCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEE
Confidence 457899999999999999999999997 999999999999999999999999999999999 8999888777665
No 175
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.5e-18 Score=129.01 Aligned_cols=84 Identities=23% Similarity=0.526 Sum_probs=76.7
Q ss_pred cccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEE
Q psy4086 132 QQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLL 211 (305)
Q Consensus 132 ~~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~ 211 (305)
......++|||+|||.++++++|+++|++||.|.+|+|+.++. .++|||||+|.+.++|++|++.|||..|.| +.|+
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~ 100 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEG--RKIE 100 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETT--EECE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECC--EEEE
Confidence 3445678999999999999999999999999999999999864 489999999999999999999999999999 7799
Q ss_pred EEeccCC
Q psy4086 212 VKFADSG 218 (305)
Q Consensus 212 v~~a~~~ 218 (305)
|+++..+
T Consensus 101 V~~a~~~ 107 (109)
T 2err_A 101 VNNATAR 107 (109)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9998764
No 176
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.75 E-value=5e-18 Score=130.37 Aligned_cols=80 Identities=16% Similarity=0.336 Sum_probs=75.3
Q ss_pred CCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEec
Q psy4086 137 PTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFA 215 (305)
Q Consensus 137 ~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a 215 (305)
.++|||+|||.++++++|+++|++||.|.+|+|+.++ ++.++|||||+|.+.++|++|+ .|||..|.| +.|+|.++
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g--~~l~V~~a 112 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRG--RTIKVLPK 112 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETT--EECEEEES
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECC--eEEEEEEC
Confidence 4789999999999999999999999999999999997 8899999999999999999999 799999999 77999998
Q ss_pred cCCC
Q psy4086 216 DSGL 219 (305)
Q Consensus 216 ~~~~ 219 (305)
+...
T Consensus 113 ~~~~ 116 (124)
T 2jwn_A 113 RTNM 116 (124)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8643
No 177
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.4e-18 Score=125.65 Aligned_cols=73 Identities=16% Similarity=0.381 Sum_probs=67.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCC-CCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTT-NKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~-g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
..++|||+|||+++++++|+++|+.|| |.+|.|++++.+ ++++|||||+|.+.++|++|+ .||+..|.++.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 87 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIR 87 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEE
Confidence 447899999999999999999999999 999999999987 999999999999999999999 8998888777655
No 178
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=8.4e-19 Score=125.48 Aligned_cols=80 Identities=24% Similarity=0.353 Sum_probs=73.8
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEE
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVK 213 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~ 213 (305)
...++|||+|||+++++++|+++|++||.|.+++|+.++ ++.++|||||+|.+.++|++|++.|||..|.| +.|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~~~~~ 80 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQA--QMAKQS 80 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCE--ESCCSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEee--EEEeec
Confidence 356899999999999999999999999999999999997 78999999999999999999999999999999 668776
Q ss_pred ecc
Q psy4086 214 FAD 216 (305)
Q Consensus 214 ~a~ 216 (305)
++.
T Consensus 81 ~~~ 83 (85)
T 1x4e_A 81 GPS 83 (85)
T ss_dssp CCC
T ss_pred CCC
Confidence 644
No 179
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.75 E-value=1.1e-18 Score=127.63 Aligned_cols=80 Identities=16% Similarity=0.284 Sum_probs=73.7
Q ss_pred CCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q psy4086 136 DPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKF 214 (305)
Q Consensus 136 ~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~ 214 (305)
..++|||+|||+++++++|+++|++||.|..+.++.++ ++.++|||||+|.+.++|++|++.||+..|.+ +.|+|++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g--r~l~v~~ 91 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS--RKVKLSG 91 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT--EECEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECC--cEEEEEe
Confidence 35789999999999999999999999999988888877 78999999999999999999999999999999 7799999
Q ss_pred ccC
Q psy4086 215 ADS 217 (305)
Q Consensus 215 a~~ 217 (305)
+..
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 764
No 180
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=8.5e-18 Score=123.83 Aligned_cols=81 Identities=28% Similarity=0.457 Sum_probs=73.6
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKF 214 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~ 214 (305)
...++|||+|||.++++++|+++|++||.|.+|++..+ ++||||+|.+.++|++|++.|||..|.| +.|+|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~~g--~~l~v~~ 85 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRG--KQLRVRF 85 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCBTT--BCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEeCC--ceEEEEE
Confidence 45678999999999999999999999999999999844 7899999999999999999999999999 7799999
Q ss_pred ccCCCcCC
Q psy4086 215 ADSGLKKR 222 (305)
Q Consensus 215 a~~~~~~~ 222 (305)
+..+....
T Consensus 86 a~~~~~~~ 93 (99)
T 2cpj_A 86 ACHSASLT 93 (99)
T ss_dssp SSCCSCCC
T ss_pred cCCCCCCC
Confidence 98865443
No 181
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=8.4e-18 Score=121.62 Aligned_cols=80 Identities=19% Similarity=0.396 Sum_probs=72.8
Q ss_pred cCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEE
Q psy4086 134 EQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVK 213 (305)
Q Consensus 134 ~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~ 213 (305)
....++|||+|||+++++++|+++|++||.|.+|++++ +||||+|.+.++|++|++.|||..|.| +.|+|+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~ 76 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK-------DYAFVHMEKEADAKAAIAQLNGKEVKG--KRINVE 76 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS-------SCEEEEESCHHHHHHHHHHHTTCEETT--EECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC-------CEEEEEECCHHHHHHHHHHhCCCEECC--cEEEEE
Confidence 45578999999999999999999999999999999983 499999999999999999999999999 779999
Q ss_pred eccCCCcCC
Q psy4086 214 FADSGLKKR 222 (305)
Q Consensus 214 ~a~~~~~~~ 222 (305)
++.....+.
T Consensus 77 ~a~~~~~~~ 85 (90)
T 2dnp_A 77 LSTKGQKKS 85 (90)
T ss_dssp ESCCCCCCC
T ss_pred ECCCCCCCC
Confidence 998875544
No 182
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.75 E-value=5.2e-18 Score=127.44 Aligned_cols=76 Identities=25% Similarity=0.435 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
...++|||+|||+++|+++|+++|++||.|.+|.|+.++.+|.++|||||+|.+.++|++|++.|||..|.++.++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 99 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 99 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 4557899999999999999999999999999999999999999999999999999999999999999888777654
No 183
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=9.1e-18 Score=124.77 Aligned_cols=75 Identities=27% Similarity=0.376 Sum_probs=69.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhc-cCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCc-ccceecc
Q psy4086 56 LSKTNLYIRGLTQDTTDKDLINMCSQ-YGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKG-IHAQMAR 131 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~~L~~~f~~-~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~-i~~~~~~ 131 (305)
...++|||+|||+++|+++|+++|++ ||.|.+|+|++++ +++++|||||+|.+.++|++|++.|||.. |.++.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 34577999999999999999999999 9999999999999 89999999999999999999999999988 8777655
No 184
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.75 E-value=9e-19 Score=126.73 Aligned_cols=80 Identities=19% Similarity=0.420 Sum_probs=72.1
Q ss_pred CceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEecc
Q psy4086 138 TNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFAD 216 (305)
Q Consensus 138 ~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~ 216 (305)
++|||+|||.++++++|+++|++||.|.+++++.++ ++.++|||||+|.+.+ |.+|++.|||..+.| +.|+|++|.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g--~~l~V~~a~ 78 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMG--RTIRVTEAN 78 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSS--SSCSEEEC-
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECC--eEEEEEEcC
Confidence 579999999999999999999999999999999998 7899999999999999 999999999999999 779999998
Q ss_pred CCCc
Q psy4086 217 SGLK 220 (305)
Q Consensus 217 ~~~~ 220 (305)
....
T Consensus 79 ~~~~ 82 (90)
T 2ki2_A 79 PKKS 82 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 7543
No 185
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.75 E-value=4.8e-18 Score=128.94 Aligned_cols=75 Identities=32% Similarity=0.529 Sum_probs=69.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
...++|||+|||+++|+++|+++|++||.|.+|.|+.++ +++++|||||+|.+.++|++|++.|||..|.++.++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 79 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIK 79 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 455789999999999999999999999999999999998 899999999999999999999999998887766554
No 186
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.75 E-value=1.4e-18 Score=127.02 Aligned_cols=75 Identities=20% Similarity=0.244 Sum_probs=70.3
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceeccc
Q psy4086 58 KTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQ 132 (305)
Q Consensus 58 ~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~ 132 (305)
.++|||+|||+++|+++|+++|++||.|.++.++.++.+++++|||||+|.+.++|++|++.||+..|.++.++.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v 89 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEE
Confidence 377999999999999999999999999999999999999999999999999999999999999999998877653
No 187
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.74 E-value=1.7e-18 Score=127.90 Aligned_cols=81 Identities=22% Similarity=0.398 Sum_probs=73.6
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC--CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEE
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN--NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLV 212 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~--~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v 212 (305)
...++|||+|||+++++++|+++|+.|| |.+|+|+.++ +|+++|||||+|.+.++|.+|+ .|||..|.| +.|+|
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g--~~l~V 92 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN--RRIRV 92 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTT--BCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECC--eEEEE
Confidence 4568999999999999999999999999 9999999986 7899999999999999999999 899999999 77999
Q ss_pred EeccCCC
Q psy4086 213 KFADSGL 219 (305)
Q Consensus 213 ~~a~~~~ 219 (305)
++++.+.
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9988753
No 188
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.6e-18 Score=131.24 Aligned_cols=83 Identities=27% Similarity=0.454 Sum_probs=73.7
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCe----EEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccE
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTV----VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPL 210 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v----~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l 210 (305)
...++|||+|||.++++++|+++|+.||.| ..+++. ++.++|||||+|.+.++|++|++.|||..|.| +.|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g--~~l 97 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM---TGRMRGQAFITFPNKEIAWQALHLVNGYKLYG--KIL 97 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE---CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSS--CBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC---CCccceEEEEEECCHHHHHHHHHHhCCCEeCC--cEE
Confidence 345899999999999999999999999999 455544 66889999999999999999999999999999 779
Q ss_pred EEEeccCCCcCC
Q psy4086 211 LVKFADSGLKKR 222 (305)
Q Consensus 211 ~v~~a~~~~~~~ 222 (305)
+|.|+..+..+.
T Consensus 98 ~v~~a~~~~~~~ 109 (115)
T 2cpx_A 98 VIEFGKNKKQRS 109 (115)
T ss_dssp EEEECCCCSCCC
T ss_pred EEEEccCCCCCC
Confidence 999999876654
No 189
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=4.8e-18 Score=124.87 Aligned_cols=75 Identities=27% Similarity=0.399 Sum_probs=69.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCC---CCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKT---TNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~---~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
..++|||+|||+++++++|+++|++||+|.+|.|++++. +++++|||||+|.+.++|++|++.|||..|.++.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 347799999999999999999999999999999999886 668999999999999999999999999888877665
No 190
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.74 E-value=2.7e-18 Score=128.79 Aligned_cols=80 Identities=16% Similarity=0.180 Sum_probs=71.8
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCC-CeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEE
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYV-TVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVK 213 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g-~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~ 213 (305)
...++|||+|||+++++++|+++|++|| .|..+.|..+ .++|||||+|.+.++|++||+.|||..|.| +.|+|+
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l~G--r~i~V~ 100 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEFRG--SVITVE 100 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEETT--EEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEECC--eEEEEE
Confidence 3457899999999999999999999999 8999998654 578999999999999999999999999999 779999
Q ss_pred eccCCC
Q psy4086 214 FADSGL 219 (305)
Q Consensus 214 ~a~~~~ 219 (305)
++....
T Consensus 101 ~a~~~p 106 (111)
T 2jvr_A 101 RDDNPP 106 (111)
T ss_dssp ESCC--
T ss_pred ECCCCC
Confidence 987643
No 191
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3e-18 Score=125.43 Aligned_cols=75 Identities=25% Similarity=0.438 Sum_probs=69.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEE-EEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIIST-KAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~-~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
..++|||+|||+++++++|+++|++||.|.++ +|++++.++.++|||||+|.+.++|++|++.|||..|.++.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 79 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPIT 79 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34789999999999999999999999999999 9999988999999999999999999999999999888777655
No 192
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=5e-18 Score=127.09 Aligned_cols=83 Identities=14% Similarity=0.226 Sum_probs=72.6
Q ss_pred ccCCCCceEEecCCCC-CCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCC--CCCCCCCcc
Q psy4086 133 QEQDPTNLYIANLPLN-FKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNG--STLPGSKEP 209 (305)
Q Consensus 133 ~~~~~~~l~V~nlp~~-~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g--~~~~g~~~~ 209 (305)
.....++|||+|||++ +++++|+++|++||.|.+|.|+ ++||||||+|.+.++|++|++.|++ ..|.| ++
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~-----~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~G--r~ 93 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM-----RMKSQAFIEMETREDAMAMVDHCLKKALWFQG--RC 93 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSS--SC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe-----cCCCEEEEEECCHHHHHHHHHHhccCCceECC--EE
Confidence 3456789999999998 9999999999999999999998 3589999999999999999998864 56888 77
Q ss_pred EEEEeccCCCcCC
Q psy4086 210 LLVKFADSGLKKR 222 (305)
Q Consensus 210 l~v~~a~~~~~~~ 222 (305)
|+|.|+..+....
T Consensus 94 l~V~~a~~~~~~~ 106 (112)
T 1x4f_A 94 VKVDLSEKYKKLV 106 (112)
T ss_dssp CEEEEECSCSSSS
T ss_pred EEEEECccccccc
Confidence 9999998765543
No 193
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.5e-17 Score=123.38 Aligned_cols=76 Identities=24% Similarity=0.406 Sum_probs=68.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceeccc
Q psy4086 55 QLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQ 132 (305)
Q Consensus 55 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~ 132 (305)
....++|||+|||+++|+++|+++|++||.|.+|+|++++. .++|||||+|.+.++|++|++.|||..|.++.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34557899999999999999999999999999999999874 38999999999999999999999998888776653
No 194
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=9.1e-18 Score=123.20 Aligned_cols=80 Identities=20% Similarity=0.296 Sum_probs=72.3
Q ss_pred cCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEE
Q psy4086 134 EQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVK 213 (305)
Q Consensus 134 ~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~ 213 (305)
....++|||+|||+++++++|+++|++||.|. +.++.+ .++|||||+|.+.++|++|++.|||..|.| +.|+|+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~V~ 89 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQGLRLGT--DTLRVA 89 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCCSSS--SCCEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCEECC--cEEEEE
Confidence 34468999999999999999999999999997 677765 678999999999999999999999999999 679999
Q ss_pred eccCCC
Q psy4086 214 FADSGL 219 (305)
Q Consensus 214 ~a~~~~ 219 (305)
++..+.
T Consensus 90 ~a~~~~ 95 (97)
T 2e5j_A 90 LARQQR 95 (97)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 998754
No 195
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=125.19 Aligned_cols=82 Identities=13% Similarity=0.333 Sum_probs=74.8
Q ss_pred cCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEE
Q psy4086 134 EQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVK 213 (305)
Q Consensus 134 ~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~ 213 (305)
....++|||+|||.++++++|+++|++||.|.+|+|+.+ ++||||+|.+.++|++|++.|||..|.| +.|+|.
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~ 94 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEG--HVVKCY 94 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETT--EECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECC--cEEEEE
Confidence 345689999999999999999999999999999999965 7899999999999999999999999999 779999
Q ss_pred eccCCCcCC
Q psy4086 214 FADSGLKKR 222 (305)
Q Consensus 214 ~a~~~~~~~ 222 (305)
|++.....+
T Consensus 95 ~a~~~~~~~ 103 (109)
T 1x4g_A 95 WGKESPDMT 103 (109)
T ss_dssp CCCCCCSSC
T ss_pred ecCCCCCCC
Confidence 998865543
No 196
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.74 E-value=2.8e-18 Score=128.78 Aligned_cols=77 Identities=22% Similarity=0.358 Sum_probs=63.9
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceec
Q psy4086 53 PEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMA 130 (305)
Q Consensus 53 ~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~ 130 (305)
.+....++|||+|||+++|+++|+++|++||.|.+|+|++++.+|+++|||||+|.+.++|++|++.++ ..|.++.+
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~~l~g~~l 96 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTI 96 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-EEETTEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-CcCCCEEE
Confidence 334456789999999999999999999999999999999999999999999999999999999998643 44444443
No 197
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=131.02 Aligned_cols=76 Identities=32% Similarity=0.509 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
...++|||+|||+++++++|+++|++||+|++++|++++.+++++|||||+|.+.++|++|++.|||..|.++.++
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3567899999999999999999999999999999999998999999999999999999999999999888877654
No 198
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-17 Score=123.71 Aligned_cols=75 Identities=29% Similarity=0.419 Sum_probs=67.4
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 55 QLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 55 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
....++|||+|||+++++++|+++|++||.|.+|+|++++.+ ++|||||+|.+.++|++|++.||+..|.++.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVK 86 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEE
Confidence 345678999999999999999999999999999999998643 689999999999999999999998888777655
No 199
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.74 E-value=9.5e-18 Score=125.33 Aligned_cols=75 Identities=19% Similarity=0.305 Sum_probs=70.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
...++|||+|||+++|+++|+++|++||.|.+|+|+.++ +++++|||||+|.+.++|++|++.|||..|.++.++
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 356789999999999999999999999999999999999 899999999999999999999999999998887664
No 200
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.74 E-value=3e-18 Score=145.44 Aligned_cols=74 Identities=26% Similarity=0.400 Sum_probs=68.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccC--CeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceec
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYG--PIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMA 130 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G--~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~ 130 (305)
..++|||+||++++|+++|+++|++|| .|++|+|++|+.++++||||||+|.+.++|++||+.||++.|.++.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l 142 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNP 142 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEe
Confidence 567899999999999999999999999 99999999999999999999999999999999999999998887654
No 201
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.7e-17 Score=125.45 Aligned_cols=74 Identities=22% Similarity=0.302 Sum_probs=68.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
..++|||+|||+++++++|+++|++||.|.+|+|+.++ +++++|||||+|.+.++|++|++.|||..|.++.++
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMH 87 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEE
Confidence 45779999999999999999999999999999999998 599999999999999999999999999888877665
No 202
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.74 E-value=1.3e-17 Score=128.24 Aligned_cols=83 Identities=13% Similarity=0.358 Sum_probs=73.7
Q ss_pred CCCCceEEecCCCCCCHHHHH----HHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccE
Q psy4086 135 QDPTNLYIANLPLNFKECDLE----SLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPL 210 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~----~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l 210 (305)
...++|||+|||+.+++++|+ ++|++||.|.+|.+.. ++.++|||||+|.+.++|.+|++.|||..|.| ++|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~--~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~g--r~l 102 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL--SDDNSGKAYIVFATQESAQAFVEAFQGYPFQG--NPL 102 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC--CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTT--SCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc--CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCC--CEE
Confidence 446789999999999999876 6999999999988754 56889999999999999999999999999999 779
Q ss_pred EEEeccCCCcC
Q psy4086 211 LVKFADSGLKK 221 (305)
Q Consensus 211 ~v~~a~~~~~~ 221 (305)
+|.|+..+...
T Consensus 103 ~V~~a~~~~~~ 113 (127)
T 2a3j_A 103 VITFSETPQSQ 113 (127)
T ss_dssp EEEECCCCCHH
T ss_pred EEEEccCcchh
Confidence 99999876543
No 203
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.74 E-value=7.7e-18 Score=121.44 Aligned_cols=75 Identities=13% Similarity=0.315 Sum_probs=70.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceeccc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQ 132 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~ 132 (305)
+.++|||+|||+++++++|+++|++||.|.+++++.++.+++++|||||+|.+.++|++|+ .|||..+.++.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V 79 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKV 79 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEE
Confidence 4578999999999999999999999999999999999989999999999999999999999 89999888877653
No 204
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.74 E-value=4.5e-18 Score=126.77 Aligned_cols=82 Identities=12% Similarity=0.133 Sum_probs=74.5
Q ss_pred CCCCceEEecCCCCC------CHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCc
Q psy4086 135 QDPTNLYIANLPLNF------KECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKE 208 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~------te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 208 (305)
...++|||+|||+.+ ++++|+++|++||.|.+|.|+ ..+|.++|||||+|.+.++|.+||+.|||..|.| +
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g--~ 89 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK--Q 89 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST--T
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC--C
Confidence 346789999999999 789999999999999999988 3478999999999999999999999999999999 6
Q ss_pred -cEEEEeccCCC
Q psy4086 209 -PLLVKFADSGL 219 (305)
Q Consensus 209 -~l~v~~a~~~~ 219 (305)
+|+|.++....
T Consensus 90 ~~l~V~~a~~~~ 101 (105)
T 2nlw_A 90 HTFRVNLFTDFD 101 (105)
T ss_dssp CEEEEECSCCCC
T ss_pred ceEEEEEcchHh
Confidence 79999998643
No 205
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7.8e-19 Score=132.90 Aligned_cols=84 Identities=18% Similarity=0.266 Sum_probs=77.4
Q ss_pred cCCCCceEEecCCCCCCHHHHHHHHhhCCCe-EEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEE
Q psy4086 134 EQDPTNLYIANLPLNFKECDLESLLAKYVTV-VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLV 212 (305)
Q Consensus 134 ~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v-~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v 212 (305)
....++|||+|||+++++++|+++|+.||.| ..|+|+.+++++++|||||+|.+.++|++||+. |+..|.+ +.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~g--r~i~v 88 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNG--REAFV 88 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETT--EEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCC--eEEEE
Confidence 3456889999999999999999999999999 899999999999999999999999999999987 9999999 77999
Q ss_pred EeccCCCc
Q psy4086 213 KFADSGLK 220 (305)
Q Consensus 213 ~~a~~~~~ 220 (305)
.++..+..
T Consensus 89 ~~a~~~~~ 96 (114)
T 2cpy_A 89 HVVTLEDM 96 (114)
T ss_dssp EEECHHHH
T ss_pred EECCHHHH
Confidence 99987653
No 206
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.6e-18 Score=128.52 Aligned_cols=76 Identities=29% Similarity=0.484 Sum_probs=68.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 55 QLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 55 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
....++|||+|||+++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++|++. ++..|.++.++
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~ 99 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVE 99 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEE
Confidence 34558899999999999999999999999999999999999999999999999999999999997 77777666554
No 207
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.74 E-value=1e-18 Score=129.21 Aligned_cols=84 Identities=19% Similarity=0.323 Sum_probs=74.8
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEE
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVK 213 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~ 213 (305)
...++|||+|||+++++++|+++|+.||.|.. .++.+. ++.++|||||+|.+.++|++||+ |||..|.| +.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g--~~l~V~ 90 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFG--NEIKLE 90 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTT--BCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECC--cEEEEE
Confidence 35678999999999999999999999999888 566665 78899999999999999999998 99999999 779999
Q ss_pred eccCCCcCC
Q psy4086 214 FADSGLKKR 222 (305)
Q Consensus 214 ~a~~~~~~~ 222 (305)
++..+..++
T Consensus 91 ~a~~~~~~~ 99 (101)
T 1fj7_A 91 KPKGRDGTR 99 (101)
T ss_dssp CCSCCCCSS
T ss_pred EcCCCCCCC
Confidence 998765543
No 208
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8.2e-18 Score=126.21 Aligned_cols=81 Identities=22% Similarity=0.386 Sum_probs=71.2
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceeccc
Q psy4086 53 PEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQ 132 (305)
Q Consensus 53 ~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~ 132 (305)
.+....++|||+|||.++++++|+++|++||+|.+|+|++++ +.++|||||+|.+.++|++|++.|||..|.++.++.
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 334456889999999999999999999999999999999986 358999999999999999999999999988877664
Q ss_pred ccC
Q psy4086 133 QEQ 135 (305)
Q Consensus 133 ~~~ 135 (305)
...
T Consensus 102 ~~a 104 (109)
T 2err_A 102 NNA 104 (109)
T ss_dssp EEC
T ss_pred EEC
Confidence 433
No 209
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.73 E-value=5.7e-18 Score=121.81 Aligned_cols=75 Identities=25% Similarity=0.418 Sum_probs=69.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCC-ccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNK-CRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~-~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
..++|||+|||+++|+++|+++|++||.|.++.|+.++.++. ++|||||+|.+.++|++|++.|||..+.++.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 78 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEIT 78 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEE
Confidence 357899999999999999999999999999999999987766 999999999999999999999999998887765
No 210
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.73 E-value=4.1e-18 Score=120.80 Aligned_cols=70 Identities=20% Similarity=0.288 Sum_probs=64.8
Q ss_pred CeEEEcCCCCCC------cHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccce-ec
Q psy4086 59 TNLYIRGLTQDT------TDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQ-MA 130 (305)
Q Consensus 59 ~~l~V~~Lp~~~------t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~-~~ 130 (305)
++|||+|||+.+ ++++|+++|++||+|.+|.|+ +.+|+++|||||+|.+.++|++|++.|||..+.++ .+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 679999999999 789999999999999999987 45799999999999999999999999999999887 54
No 211
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.73 E-value=9e-18 Score=129.27 Aligned_cols=76 Identities=25% Similarity=0.442 Sum_probs=70.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
...++|||+|||+++|+++|+++|++||.|.+|.|+.++.++.++|||||+|.+.++|++|++.|||..|.++.++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 3467899999999999999999999999999999999998999999999999999999999999999887766554
No 212
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.5e-17 Score=122.12 Aligned_cols=74 Identities=22% Similarity=0.265 Sum_probs=66.0
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 55 QLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 55 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
....++|||+|||+++|+++|+++|++||.|.+|+|..+ ++++|||||+|.+.++|++|++.||+..|.++.++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 92 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLR 92 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 335578999999999999999999999999999999654 56899999999999999999999999888777665
No 213
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=8.4e-18 Score=125.05 Aligned_cols=74 Identities=19% Similarity=0.271 Sum_probs=66.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhccCCeeE-EEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIIS-TKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~-~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
...++|||+|||+++|+++|+++|+.||.|.+ |.|+.+ .+|+++|||||+|.+.++|++|++. |+..|.++.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~ 87 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIE 87 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEE
Confidence 34578999999999999999999999999987 888888 6899999999999999999999997 88887776654
No 214
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.3e-17 Score=121.50 Aligned_cols=78 Identities=22% Similarity=0.341 Sum_probs=70.9
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhC--CCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEE
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKY--VTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLV 212 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~--g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v 212 (305)
...++|||+|||+++++++|+++|++| |.|..|++. ++||||+|.+.++|++|++.|||..|.+ +.|+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v 83 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDG--SPIEV 83 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETT--EEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCC--cEEEE
Confidence 346789999999999999999999999 999998875 6699999999999999999999999999 77999
Q ss_pred EeccCCCcC
Q psy4086 213 KFADSGLKK 221 (305)
Q Consensus 213 ~~a~~~~~~ 221 (305)
.+++.+...
T Consensus 84 ~~a~~~~~~ 92 (99)
T 2cpd_A 84 TLAKPVDKD 92 (99)
T ss_dssp ECCCCCCCC
T ss_pred EECCCCCCC
Confidence 999876543
No 215
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.9e-18 Score=127.47 Aligned_cols=75 Identities=25% Similarity=0.574 Sum_probs=69.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
..++|||+|||+++++++|+++|++||.|.+|+|++++.+|+++|||||+|.+.++|++|++.|||..+.++.++
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALR 81 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 457899999999999999999999999999999999998999999999999999999999999999888776554
No 216
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.73 E-value=1.3e-17 Score=125.21 Aligned_cols=77 Identities=25% Similarity=0.426 Sum_probs=70.6
Q ss_pred CCceEEecCCCC-CCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEec
Q psy4086 137 PTNLYIANLPLN-FKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFA 215 (305)
Q Consensus 137 ~~~l~V~nlp~~-~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a 215 (305)
.++|||+|||++ +++++|+++|++||.|.+|.| +++||||+|.+.++|++|++.||+..|.| +.|+|.++
T Consensus 27 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~V~~a 97 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAG--QTLDINMA 97 (110)
T ss_dssp SSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETT--EECCEEES
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECC--eEEEEEEC
Confidence 479999999999 999999999999999999998 47899999999999999999999999999 77999999
Q ss_pred cCCCcCC
Q psy4086 216 DSGLKKR 222 (305)
Q Consensus 216 ~~~~~~~ 222 (305)
......+
T Consensus 98 ~~~~~~~ 104 (110)
T 1wf1_A 98 GEPKPDR 104 (110)
T ss_dssp CCCCSCC
T ss_pred CCCCCCC
Confidence 8654443
No 217
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.6e-17 Score=122.75 Aligned_cols=69 Identities=16% Similarity=0.247 Sum_probs=61.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhcc--Ccccceecc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQD--KGIHAQMAR 131 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g--~~i~~~~~~ 131 (305)
..++|||+|||+++|+++|+++|++||+|.+|+|+++ ||||||+|.+.++|++|++.|++ ..|.++.++
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4578999999999999999999999999999999875 68999999999999999998763 566666555
No 218
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.2e-17 Score=122.39 Aligned_cols=79 Identities=22% Similarity=0.382 Sum_probs=70.4
Q ss_pred cCCCCceEEecCCC-CCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEE
Q psy4086 134 EQDPTNLYIANLPL-NFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLV 212 (305)
Q Consensus 134 ~~~~~~l~V~nlp~-~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v 212 (305)
..+.++|||+|||+ ++++++|+++|++||.|.+|+|. +|||||+|.+.++|++|++.|||..+.| +.|+|
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~V 77 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFG--KKLIL 77 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBT--TTBCE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCC--cEEEE
Confidence 34568999999998 99999999999999999999985 7899999999999999999999999999 67999
Q ss_pred EeccCCCcC
Q psy4086 213 KFADSGLKK 221 (305)
Q Consensus 213 ~~a~~~~~~ 221 (305)
.++......
T Consensus 78 ~~a~~~~~~ 86 (96)
T 2kvi_A 78 EVSSSNARP 86 (96)
T ss_dssp EEEECCCC-
T ss_pred EEcCcCCCC
Confidence 999875443
No 219
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.73 E-value=4.2e-18 Score=120.73 Aligned_cols=72 Identities=14% Similarity=0.214 Sum_probs=66.3
Q ss_pred CceEEecCCCCC------CHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCc-cE
Q psy4086 138 TNLYIANLPLNF------KECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKE-PL 210 (305)
Q Consensus 138 ~~l~V~nlp~~~------te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~-~l 210 (305)
++|||+|||..+ ++++|+++|++||.|.+|.|. ..+|.++|||||+|.+.++|++|++.|||..|.| + +|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g--~~~l 78 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK--QHTF 78 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSS--SSCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCC--ceeE
Confidence 689999999999 779999999999999999988 3478999999999999999999999999999999 5 57
Q ss_pred EE
Q psy4086 211 LV 212 (305)
Q Consensus 211 ~v 212 (305)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 65
No 220
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.73 E-value=2.6e-17 Score=119.41 Aligned_cols=73 Identities=22% Similarity=0.339 Sum_probs=67.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
..++|||+|||+++++++|+++|++||+|.+|+|+++ +++++|||||+|.+.++|++|++.|||..|.++.++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 79 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREID 79 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 4578999999999999999999999999999999984 789999999999999999999999999888877655
No 221
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.73 E-value=4.2e-18 Score=129.63 Aligned_cols=83 Identities=14% Similarity=0.199 Sum_probs=76.8
Q ss_pred cCCCCceEEecCCCCCCHHHHHHHHhhCCC---eEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccE
Q psy4086 134 EQDPTNLYIANLPLNFKECDLESLLAKYVT---VVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPL 210 (305)
Q Consensus 134 ~~~~~~l~V~nlp~~~te~~l~~~F~~~g~---v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l 210 (305)
....++|||+|||+++|+++|+++|+.||. |..|+|+.+++|+++|||||+|.+.++|++||+ ||+..|.+ +.|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g--r~i 90 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGH--RYI 90 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETT--EEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECC--eEE
Confidence 345688999999999999999999999999 899999999889999999999999999999999 99999999 779
Q ss_pred EEEeccCCC
Q psy4086 211 LVKFADSGL 219 (305)
Q Consensus 211 ~v~~a~~~~ 219 (305)
+|.++....
T Consensus 91 ~V~~a~~~~ 99 (118)
T 2db1_A 91 EVFKSHRTE 99 (118)
T ss_dssp EEEEECHHH
T ss_pred EEEECCHHH
Confidence 999987644
No 222
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.73 E-value=4.3e-18 Score=118.77 Aligned_cols=71 Identities=31% Similarity=0.561 Sum_probs=66.5
Q ss_pred eEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 60 ~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
+|||+|||+++++++|+++|++||.|.++.++.++.+++++|||||+|.+.++|++|++ +|+..+.++.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~ 71 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVE 71 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCE
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEE
Confidence 49999999999999999999999999999999999899999999999999999999998 898888776654
No 223
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=3.9e-18 Score=119.51 Aligned_cols=71 Identities=23% Similarity=0.411 Sum_probs=64.9
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceec
Q psy4086 59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMA 130 (305)
Q Consensus 59 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~ 130 (305)
++|||+|||+++++++|+++|++||+|.++.+++++.+++++|||||+|.+.++|++|++.++ ..+.++.+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l 71 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTI 71 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEE
Confidence 469999999999999999999999999999999999899999999999999999999999776 66555543
No 224
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6.8e-18 Score=129.65 Aligned_cols=74 Identities=19% Similarity=0.306 Sum_probs=67.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
..++|||+|||+++|+++|+++|+.||.|.++.++.+..+|+++|||||+|.+.++|++||+ |||..|.++.++
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 97 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQ 97 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEE
Confidence 45789999999999999999999999999987777777799999999999999999999999 999988877553
No 225
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.72 E-value=6.9e-17 Score=123.99 Aligned_cols=77 Identities=18% Similarity=0.284 Sum_probs=70.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceeccc
Q psy4086 55 QLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQ 132 (305)
Q Consensus 55 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~ 132 (305)
....++|||+|||+++++++|+++|++||.|.+|+|+.++ +|+++|||||+|.+.++|++|++.|||..|.++.++.
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 3456789999999999999999999999999999999999 8999999999999999999999999998887776653
No 226
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.1e-17 Score=123.98 Aligned_cols=72 Identities=19% Similarity=0.326 Sum_probs=65.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
..++|||+|||+++|+++|+++|+.||. .+|+|++++ +++++|||||+|.+.++|++||+ +|+..|..+.++
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVE 85 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEE
Confidence 4477999999999999999999999995 599999998 89999999999999999999995 788888777654
No 227
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.4e-17 Score=121.24 Aligned_cols=79 Identities=22% Similarity=0.318 Sum_probs=70.0
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCC-eEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCC-CCCCCCCccEEE
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVT-VVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNG-STLPGSKEPLLV 212 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~-v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g-~~~~g~~~~l~v 212 (305)
...++|||+|||.++++++|+++|++||. |..+.+. +++||||+|.+.++|++|++.||| ..|.| +.|+|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g--~~l~v 77 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHG--KIMEV 77 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETT--EECEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECC--EEEEE
Confidence 45689999999999999999999999999 6665553 478999999999999999999999 99999 77999
Q ss_pred EeccCCCcC
Q psy4086 213 KFADSGLKK 221 (305)
Q Consensus 213 ~~a~~~~~~ 221 (305)
+++..+..+
T Consensus 78 ~~a~~~~~~ 86 (93)
T 2cqh_A 78 DYSVSKKLR 86 (93)
T ss_dssp EECCCCCCC
T ss_pred EEccCcccc
Confidence 999876544
No 228
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.72 E-value=2.2e-17 Score=131.98 Aligned_cols=75 Identities=23% Similarity=0.341 Sum_probs=70.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceec
Q psy4086 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMA 130 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~ 130 (305)
...++|||+|||+++|+++|+++|++||+|.+|+|+.++.++.++|||||+|.+.++|++||+.||+..|.++.+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 111 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRII 111 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 456789999999999999999999999999999999999999999999999999999999999999988877654
No 229
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.72 E-value=8.5e-18 Score=127.95 Aligned_cols=73 Identities=19% Similarity=0.239 Sum_probs=67.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCC---eeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGP---IISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~---i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
..++|||+|||+++|+++|+++|+.||. |..|+|++++. |+++|||||+|.+.++|++|++ +|+..|.++.++
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 4578999999999999999999999999 89999999986 9999999999999999999999 999988887654
No 230
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.72 E-value=1.1e-17 Score=130.96 Aligned_cols=80 Identities=20% Similarity=0.319 Sum_probs=74.5
Q ss_pred cCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEE
Q psy4086 134 EQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLV 212 (305)
Q Consensus 134 ~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v 212 (305)
....++|||+|||.++++++|+++|++||.|.+++|+.++ ++.++|||||+|.+.++|++|++.|||..|.| +.|+|
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v 137 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG--RTIRV 137 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETT--EEEEE
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECC--EEEEE
Confidence 3456899999999999999999999999999999999997 78999999999999999999999999999999 77999
Q ss_pred Eec
Q psy4086 213 KFA 215 (305)
Q Consensus 213 ~~a 215 (305)
++|
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 986
No 231
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=7.7e-18 Score=127.40 Aligned_cols=73 Identities=15% Similarity=0.175 Sum_probs=67.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCe-eEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPI-ISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i-~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
..++|||+|||+++|+++|+++|+.||.| ..|+|++++ +|+++|||||+|.+.++|++||+. |+..|.++.++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~ 87 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAF 87 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEE
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEE
Confidence 45779999999999999999999999999 899999999 899999999999999999999996 88887776553
No 232
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.72 E-value=6.8e-18 Score=124.62 Aligned_cols=76 Identities=16% Similarity=0.350 Sum_probs=67.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCC-CCCCccceEEEEecchhhHHHHHHHhccCcccceeccc
Q psy4086 55 QLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDK-TTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQ 132 (305)
Q Consensus 55 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~-~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~ 132 (305)
....++|||+|||+++++++|+++|++|| |.+|+|++++ .+|+++|||||+|.+.++|++|+ .|||..|.++.++.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 34558899999999999999999999999 9999999998 68999999999999999999999 89999888776653
No 233
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1e-17 Score=126.15 Aligned_cols=79 Identities=14% Similarity=0.265 Sum_probs=70.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHH---HHHhccCCeeEEEEeeCCCCC---CccceEEEEecchhhHHHHHHHhccCcccce
Q psy4086 55 QLSKTNLYIRGLTQDTTDKDLI---NMCSQYGPIISTKAILDKTTN---KCRGYGFVDFESGGYALAAVKALQDKGIHAQ 128 (305)
Q Consensus 55 ~~~~~~l~V~~Lp~~~t~~~L~---~~f~~~G~i~~~~i~~~~~~g---~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~ 128 (305)
....++|||+|||+++++++|+ ++|++||+|.+|.|++++.++ +++|||||+|.+.++|++|++.|||..|.++
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3456779999999999999999 999999999999999988654 5669999999999999999999999998887
Q ss_pred ecccc
Q psy4086 129 MARQQ 133 (305)
Q Consensus 129 ~~~~~ 133 (305)
.++..
T Consensus 92 ~l~V~ 96 (111)
T 2cpi_A 92 TLKAS 96 (111)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 76643
No 234
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1e-17 Score=125.41 Aligned_cols=72 Identities=13% Similarity=0.208 Sum_probs=66.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
+.++|||+|||+++|+++|+++|+.| .|.+|+|++|+. |+++|||||+|.+.++|++|+ .+|+..|.++.+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~ 86 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVE 86 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEE
Confidence 34689999999999999999999999 899999999985 999999999999999999999 5999888887654
No 235
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.72 E-value=2.9e-17 Score=124.42 Aligned_cols=80 Identities=15% Similarity=0.234 Sum_probs=67.0
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCcc-----
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEP----- 209 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~----- 209 (305)
...++|||+|||+++++++|+++|++||.|++|.|+.+ |||||+|.+.++|++||+.|||..|.| +.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g--r~~~~~~ 85 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRS--HEGETAY 85 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCC--TTSCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECC--cEeeeEE
Confidence 34588999999999999999999999999999999865 899999999999999999999999999 55
Q ss_pred EEEEeccCCCcCC
Q psy4086 210 LLVKFADSGLKKR 222 (305)
Q Consensus 210 l~v~~a~~~~~~~ 222 (305)
|+|..+......+
T Consensus 86 i~v~~~~~~~~~~ 98 (115)
T 3beg_B 86 IRVKVDGPRSPSY 98 (115)
T ss_dssp CEEEECC----CC
T ss_pred EEeccCCCCCCCC
Confidence 7777776654443
No 236
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.2e-17 Score=124.95 Aligned_cols=78 Identities=15% Similarity=0.197 Sum_probs=72.9
Q ss_pred CCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEecc
Q psy4086 137 PTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFAD 216 (305)
Q Consensus 137 ~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~ 216 (305)
..+|||+|||+++++++|+++|+.| .|.+|+|+.+++|+++|||||+|.+.++|++|| .||+..|.+ +.|.|..+.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~g--r~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQ--RYVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETT--EEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECC--eEEEEEECC
Confidence 3689999999999999999999999 899999999998999999999999999999999 699999999 779998887
Q ss_pred CC
Q psy4086 217 SG 218 (305)
Q Consensus 217 ~~ 218 (305)
..
T Consensus 92 ~~ 93 (109)
T 2dnn_A 92 ER 93 (109)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 237
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.4e-17 Score=117.78 Aligned_cols=76 Identities=17% Similarity=0.323 Sum_probs=70.1
Q ss_pred cCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHh-CCCCCCCCCccEEE
Q psy4086 134 EQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLF-NGSTLPGSKEPLLV 212 (305)
Q Consensus 134 ~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l-~g~~~~g~~~~l~v 212 (305)
....++|||+|||.++++++|+++|++||.|.+|+++. ++|||||+|.+.++|++|++.| ++..+.| ++|+|
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~-----~kg~afV~f~~~~~A~~a~~~l~~~~~~~g--~~l~v 81 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ-----RQQCAFIQFATRQAAEVAAEKSFNKLIVNG--RRLNV 81 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHTTTTTCEETT--EECCE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC-----CCCEEEEEECCHHHHHHHHHHhcCCeeECC--CEEEE
Confidence 34568999999999999999999999999999999995 4789999999999999999998 9999999 77999
Q ss_pred Eecc
Q psy4086 213 KFAD 216 (305)
Q Consensus 213 ~~a~ 216 (305)
+|++
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 9974
No 238
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.72 E-value=6.6e-18 Score=117.77 Aligned_cols=74 Identities=15% Similarity=0.274 Sum_probs=69.3
Q ss_pred ceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEec
Q psy4086 139 NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFA 215 (305)
Q Consensus 139 ~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a 215 (305)
+|||+|||.++++++|+++|++||.|.++.++.++ ++.++|||||+|.+.++|++|++. ++..+.| +.|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g--~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGL--SKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTT--BCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECC--EEEEEEEC
Confidence 68999999999999999999999999999999987 789999999999999999999985 8899999 66998875
No 239
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3e-17 Score=118.92 Aligned_cols=73 Identities=16% Similarity=0.290 Sum_probs=67.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
...++|||+|||+++++++|+++|+.| .|.+|+|+++ .+|+++|||||+|.+.++|++|++ |||..|.++.++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~ 80 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIE 80 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEE
Confidence 345789999999999999999999999 9999999999 689999999999999999999999 999988887665
No 240
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.9e-17 Score=120.27 Aligned_cols=73 Identities=15% Similarity=0.141 Sum_probs=67.0
Q ss_pred CCCeEEEcCCCCCCcHHHHH----HHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceeccc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLI----NMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQ 132 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~----~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~ 132 (305)
+.++|||+|||+++++++|+ ++|++||+|.+|+|++++.+ +|||||+|.+.++|++|++.|||..|.++.++.
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 44789999999999999999 99999999999999999865 899999999999999999999999888877653
No 241
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.7e-17 Score=124.89 Aligned_cols=76 Identities=12% Similarity=0.184 Sum_probs=70.4
Q ss_pred CCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEec
Q psy4086 136 DPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFA 215 (305)
Q Consensus 136 ~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a 215 (305)
..++|||+|||+++++++|+++|++||.|..|.|.. +++||||+|.+.++|++||+.|||..|.+ ++|.|.|+
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~V~~a 81 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHH--VPLYLEWA 81 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSS--SBCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECC--eEEEEEEC
Confidence 457899999999999999999999999999999873 57899999999999999999999999999 77999998
Q ss_pred cCC
Q psy4086 216 DSG 218 (305)
Q Consensus 216 ~~~ 218 (305)
...
T Consensus 82 ~~~ 84 (111)
T 1whx_A 82 PIG 84 (111)
T ss_dssp ETT
T ss_pred CCC
Confidence 764
No 242
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.71 E-value=9.8e-18 Score=130.41 Aligned_cols=75 Identities=17% Similarity=0.177 Sum_probs=68.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhccCC---eeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 55 QLSKTNLYIRGLTQDTTDKDLINMCSQYGP---IISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 55 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~---i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
....++|||+|||+++|+++|+++|+.||. |.+|+|++|+. |+++|||||+|.+.++|++|++ ||+..|.++.++
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 345678999999999999999999999999 89999999997 9999999999999999999999 999888877553
No 243
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.71 E-value=2.3e-17 Score=123.55 Aligned_cols=81 Identities=22% Similarity=0.502 Sum_probs=72.0
Q ss_pred cccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEE
Q psy4086 132 QQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLL 211 (305)
Q Consensus 132 ~~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~ 211 (305)
......++|||+|||.++++++|+++|++||.|.+|++. +|||||+|.+.++|++|++.|||..|.| +.|+
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~ 96 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFAN--QPLE 96 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETT--EECE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECC--eEEE
Confidence 344566899999999999999999999999999999988 7899999999999999999999999999 7799
Q ss_pred EEeccCCCcC
Q psy4086 212 VKFADSGLKK 221 (305)
Q Consensus 212 v~~a~~~~~~ 221 (305)
|.|++....+
T Consensus 97 V~~a~~~~~r 106 (108)
T 2jvo_A 97 VVYSKLPAKR 106 (108)
T ss_dssp EESCSCCC--
T ss_pred EEEecCCCCC
Confidence 9999876543
No 244
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.71 E-value=6.8e-17 Score=128.42 Aligned_cols=79 Identities=11% Similarity=0.122 Sum_probs=71.2
Q ss_pred CceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEeccC
Q psy4086 138 TNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADS 217 (305)
Q Consensus 138 ~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~~ 217 (305)
.+|||+||++.+|+++|+++|++||.|++|.|..+ ..++||||+|.+.++|++|++.|||..|.+..+.|+|.|++.
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k---~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~ 123 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 123 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES---SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecC
Confidence 56899999999999999999999999999999765 357899999999999999999999999966336799999987
Q ss_pred CC
Q psy4086 218 GL 219 (305)
Q Consensus 218 ~~ 219 (305)
+.
T Consensus 124 ~~ 125 (164)
T 1sjr_A 124 TS 125 (164)
T ss_dssp SS
T ss_pred Cc
Confidence 53
No 245
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.5e-17 Score=122.86 Aligned_cols=76 Identities=20% Similarity=0.340 Sum_probs=70.8
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKF 214 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~ 214 (305)
...++|||+|||.++++++|+++|++||.|.++++. +++|||||+|.+.++|++|++.|||..|.| +.|+|+|
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~V~~ 97 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-----PEKGCCFIKYDTHEQAAVCIVALANFPFQG--RNLRTGW 97 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCEETT--EECCCCB
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-----cCCCEEEEEECCHHHHHHHHHHhCCCeECC--eEEEEEe
Confidence 346789999999999999999999999999999998 468999999999999999999999999999 7799999
Q ss_pred ccC
Q psy4086 215 ADS 217 (305)
Q Consensus 215 a~~ 217 (305)
+++
T Consensus 98 a~~ 100 (101)
T 2la4_A 98 GKE 100 (101)
T ss_dssp CCC
T ss_pred ccC
Confidence 875
No 246
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.71 E-value=7.6e-18 Score=125.95 Aligned_cols=83 Identities=11% Similarity=0.104 Sum_probs=76.3
Q ss_pred cCCCCceEEecCCCCCCHHHHHHHHhhCCC---eEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccE
Q psy4086 134 EQDPTNLYIANLPLNFKECDLESLLAKYVT---VVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPL 210 (305)
Q Consensus 134 ~~~~~~l~V~nlp~~~te~~l~~~F~~~g~---v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l 210 (305)
....++|||+|||+++|+++|+++|+.||. |.+|+|+.++.|+++|||||+|.+.++|++||+ +|+..|.+ +.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~g--r~i 84 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQ--RYV 84 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSS--SCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCC--eEE
Confidence 345688999999999999999999999998 899999999889999999999999999999999 99999999 679
Q ss_pred EEEeccCCC
Q psy4086 211 LVKFADSGL 219 (305)
Q Consensus 211 ~v~~a~~~~ 219 (305)
+|.++....
T Consensus 85 ~V~~a~~~~ 93 (107)
T 2lmi_A 85 EVYEINNED 93 (107)
T ss_dssp CCEECCHHH
T ss_pred EEEECCHHH
Confidence 999987643
No 247
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.71 E-value=4.5e-18 Score=123.03 Aligned_cols=73 Identities=26% Similarity=0.531 Sum_probs=68.3
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceeccc
Q psy4086 59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQ 132 (305)
Q Consensus 59 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~ 132 (305)
++|||+|||+++++++|+++|++||+|.+|++++++.+++++|||||+|.+.+ |++|++.|||..+.++.++.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V 74 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRV 74 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEE
Confidence 57999999999999999999999999999999999999999999999999999 99999999998888776653
No 248
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.71 E-value=6.9e-18 Score=123.55 Aligned_cols=82 Identities=16% Similarity=0.344 Sum_probs=72.6
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKF 214 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~ 214 (305)
...++|||+|||.++++++|+++|+.||.|..+ ..++.++|||||+|.+.++|++|++.|||..|.| +.|+|.+
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~ 87 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG--RSVSLYY 87 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETT--EEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC--eEEEEEE
Confidence 346789999999999999999999999987765 3367889999999999999999999999999999 7799999
Q ss_pred ccCCCcCC
Q psy4086 215 ADSGLKKR 222 (305)
Q Consensus 215 a~~~~~~~ 222 (305)
+..+...+
T Consensus 88 a~~~~~~~ 95 (96)
T 1fjc_A 88 TGEKGGTR 95 (96)
T ss_dssp CSSSCCCC
T ss_pred cCCCCCCC
Confidence 98765543
No 249
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.71 E-value=6.4e-17 Score=118.67 Aligned_cols=77 Identities=22% Similarity=0.397 Sum_probs=70.2
Q ss_pred ccCCCCceEEecCCC-CCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEE
Q psy4086 133 QEQDPTNLYIANLPL-NFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLL 211 (305)
Q Consensus 133 ~~~~~~~l~V~nlp~-~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~ 211 (305)
.....++|||+|||+ ++++++|+++|++||.|.++++. +|||||+|.+.++|++|++.|||..+.| +.|+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~ 88 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEMNFG--KKLI 88 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSEETT--EECE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCEECC--EEEE
Confidence 334568999999998 99999999999999999999984 7899999999999999999999999999 7799
Q ss_pred EEeccCC
Q psy4086 212 VKFADSG 218 (305)
Q Consensus 212 v~~a~~~ 218 (305)
|++++.+
T Consensus 89 V~~a~~~ 95 (97)
T 2xnq_A 89 LEVSSSN 95 (97)
T ss_dssp EEECCCC
T ss_pred EEecCCC
Confidence 9998764
No 250
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.70 E-value=1.5e-17 Score=121.95 Aligned_cols=83 Identities=14% Similarity=0.366 Sum_probs=74.5
Q ss_pred cCCCCceEEecCCCCCCHHHHH----HHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCcc
Q psy4086 134 EQDPTNLYIANLPLNFKECDLE----SLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEP 209 (305)
Q Consensus 134 ~~~~~~l~V~nlp~~~te~~l~----~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~ 209 (305)
....++|||+|||.++++++|+ ++|++||.|.+|.+.. ++.++|||||+|.+.++|++|++.|||..+.| +.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~ 80 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYD--KP 80 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETT--EE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECC--cE
Confidence 3456899999999999999999 9999999999999874 45678999999999999999999999999999 78
Q ss_pred EEEEeccCCCc
Q psy4086 210 LLVKFADSGLK 220 (305)
Q Consensus 210 l~v~~a~~~~~ 220 (305)
|+|.|+.....
T Consensus 81 l~v~~a~~~~~ 91 (97)
T 1nu4_A 81 MRIQYAKTDSD 91 (97)
T ss_dssp CEEEECSSCCT
T ss_pred EEEEEccCCCc
Confidence 99999987543
No 251
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.70 E-value=8.8e-17 Score=121.67 Aligned_cols=82 Identities=17% Similarity=0.318 Sum_probs=74.7
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKF 214 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~ 214 (305)
...++|||+|||.++++++|+++|+.||.|.+|.|+.+. .++|||||+|.+.++|.+|++.|||..+.| +.|+|.|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~ 81 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP--ETRGTAYVVYEDIFDAKNAVDHLSGFNVSN--RYLVVLY 81 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST--TTTTCEEEEESSHHHHHHHHHHHTTCBSSS--CBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC--CCCcEEEEEECCHHHHHHHHHHcCCCEECC--eEEEEEE
Confidence 456899999999999999999999999999999998764 568999999999999999999999999999 7799999
Q ss_pred ccCCCc
Q psy4086 215 ADSGLK 220 (305)
Q Consensus 215 a~~~~~ 220 (305)
+.....
T Consensus 82 a~~~~~ 87 (115)
T 3lqv_A 82 YNANRA 87 (115)
T ss_dssp CCHHHH
T ss_pred ecCChh
Confidence 986443
No 252
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.70 E-value=3.1e-17 Score=122.16 Aligned_cols=73 Identities=21% Similarity=0.291 Sum_probs=66.5
Q ss_pred CCCeEEEcCCCCCC------cHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccce-e
Q psy4086 57 SKTNLYIRGLTQDT------TDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQ-M 129 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~------t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~-~ 129 (305)
..++|||+|||+.+ |+++|+++|++||.|.+|.|+ +.+|+++|||||+|.+.++|++|++.|||..|.++ .
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 35789999999999 789999999999999999988 45799999999999999999999999999988876 5
Q ss_pred cc
Q psy4086 130 AR 131 (305)
Q Consensus 130 ~~ 131 (305)
++
T Consensus 92 l~ 93 (105)
T 2nlw_A 92 FR 93 (105)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 253
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.7e-17 Score=122.50 Aligned_cols=85 Identities=19% Similarity=0.210 Sum_probs=72.0
Q ss_pred ccCCCCceEE--ecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCC---CCCC
Q psy4086 133 QEQDPTNLYI--ANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTL---PGSK 207 (305)
Q Consensus 133 ~~~~~~~l~V--~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~ 207 (305)
.....++||| +||++++++++|+++|++||.|.+|.|+. .||||||+|.+.++|++|++.|||..| .+..
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 3345678999 77999999999999999999999998874 378999999999999999999999977 2223
Q ss_pred ccEEEEeccCCCcCC
Q psy4086 208 EPLLVKFADSGLKKR 222 (305)
Q Consensus 208 ~~l~v~~a~~~~~~~ 222 (305)
++|.|.|+.......
T Consensus 96 ~~l~v~~a~~~p~~~ 110 (114)
T 2cq2_A 96 ITLYLNFVEKVQWSG 110 (114)
T ss_dssp EECEEEEESCCCCSS
T ss_pred cEEEEEecccCcccC
Confidence 889999998755443
No 254
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.70 E-value=1.4e-17 Score=129.75 Aligned_cols=78 Identities=24% Similarity=0.329 Sum_probs=71.0
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 54 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
+....++|||+|||+++|+++|+++|++||+|..|+|+.++.+++++|||||+|.+.++|++|++.|||..|.++.++
T Consensus 43 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 120 (135)
T 2lea_A 43 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 120 (135)
T ss_dssp SGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 344567899999999999999999999999999999999998999999999999999999999999998887766554
No 255
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.4e-18 Score=129.46 Aligned_cols=83 Identities=12% Similarity=0.160 Sum_probs=73.6
Q ss_pred cCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeC-CCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEE
Q psy4086 134 EQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRD-NNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLV 212 (305)
Q Consensus 134 ~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~-~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v 212 (305)
....++|||+|||+++++++|+++|+.||.|..+.++.+ .+|.++|||||+|.+.++|++||+ ||+..|.| +.|.|
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g--r~i~V 98 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGN--RFIQV 98 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTT--SCBEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECC--cEEEE
Confidence 345689999999999999999999999999988555554 489999999999999999999999 99999999 77999
Q ss_pred EeccCCC
Q psy4086 213 KFADSGL 219 (305)
Q Consensus 213 ~~a~~~~ 219 (305)
.++..+.
T Consensus 99 ~~a~~~~ 105 (124)
T 1wel_A 99 HPITKKG 105 (124)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9987643
No 256
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=7.8e-17 Score=118.61 Aligned_cols=72 Identities=21% Similarity=0.407 Sum_probs=64.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecccc
Q psy4086 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQ 133 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~~ 133 (305)
...++|||+|||+++|+++|+++|++||+|.+|++.++ +|||||+|.+.++|++|++.|||..|.++.++..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 34578999999999999999999999999999999854 6899999999999999999999998888776643
No 257
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.70 E-value=1.6e-17 Score=124.14 Aligned_cols=74 Identities=18% Similarity=0.172 Sum_probs=67.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhccCC---eeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGP---IISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~---i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
...++|||+|||+++|+++|+++|+.||. |.+|+|++++. |+++|||||+|.+.++|++|++ +|+..|.++.++
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 45678999999999999999999999988 89999999987 9999999999999999999999 998888776553
No 258
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.70 E-value=4.9e-17 Score=130.13 Aligned_cols=77 Identities=25% Similarity=0.321 Sum_probs=70.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 55 QLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 55 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
....++|||+|||+++|+++|+++|+.||.|.+|+|++++.+|+++|||||+|.+.++|++|++.|||..|.++.++
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 143 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 143 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 34567899999999999999999999999999999999998999999999999999999999999998887776554
No 259
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.2e-16 Score=117.23 Aligned_cols=80 Identities=15% Similarity=0.257 Sum_probs=71.6
Q ss_pred cCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEE
Q psy4086 134 EQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVK 213 (305)
Q Consensus 134 ~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~ 213 (305)
....++|||+|| ++++++|+++|++||.|.+|.|. .++|||||+|.+.++|++||+.|||..|.+ +.|+|.
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g--~~l~v~ 82 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVES--VQLKVN 82 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETT--EEEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECC--eEEEEE
Confidence 345689999996 89999999999999999999985 568999999999999999999999999999 789999
Q ss_pred eccCCCcCC
Q psy4086 214 FADSGLKKR 222 (305)
Q Consensus 214 ~a~~~~~~~ 222 (305)
|+..+..+.
T Consensus 83 ~a~~~~~~~ 91 (97)
T 1x5p_A 83 IARKQPMLD 91 (97)
T ss_dssp CCSSCCCCC
T ss_pred ECCCCCCCC
Confidence 998765543
No 260
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.70 E-value=1.5e-17 Score=115.93 Aligned_cols=70 Identities=20% Similarity=0.417 Sum_probs=64.7
Q ss_pred eEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceec
Q psy4086 60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMA 130 (305)
Q Consensus 60 ~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~ 130 (305)
+|||+|||+++++++|+++|++||+|.++.+++++.+++++|||||+|.+.++|++|++. ++..+.++.+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l 70 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKC 70 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEE
Confidence 599999999999999999999999999999999999999999999999999999999994 7777766654
No 261
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.1e-16 Score=119.82 Aligned_cols=64 Identities=22% Similarity=0.318 Sum_probs=60.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHA 127 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~ 127 (305)
..++|||+|||+++|+++|+++|++||+|.+|+|+.+ |||||+|.+.++|++||+.|||+.|.+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g 77 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRS 77 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccC
Confidence 4578999999999999999999999999999999876 799999999999999999999988877
No 262
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.70 E-value=5.5e-17 Score=132.23 Aligned_cols=83 Identities=19% Similarity=0.401 Sum_probs=77.6
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKF 214 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~ 214 (305)
...++|||+|||+.+++++|+++|++||.|++|.|+.++++.++|||||+|.+.++|++||+.|||..|.| +.|+|.|
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~G--r~l~V~~ 163 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDG--RPMDIQL 163 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSS--SBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECC--EEEEEEE
Confidence 34579999999999999999999999999999999999888999999999999999999999999999999 7799999
Q ss_pred ccCCC
Q psy4086 215 ADSGL 219 (305)
Q Consensus 215 a~~~~ 219 (305)
+....
T Consensus 164 a~~~~ 168 (177)
T 2f3j_A 164 VASQI 168 (177)
T ss_dssp ESSGG
T ss_pred ecCCC
Confidence 88643
No 263
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.70 E-value=3e-17 Score=126.00 Aligned_cols=76 Identities=22% Similarity=0.395 Sum_probs=70.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceeccc
Q psy4086 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQ 132 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~ 132 (305)
...++|||+|||+++|+++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++|+ .|||..|.++.++.
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 109 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKV 109 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEE
Confidence 34678999999999999999999999999999999999989999999999999999999999 79999888877653
No 264
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.69 E-value=1.3e-17 Score=123.57 Aligned_cols=74 Identities=22% Similarity=0.451 Sum_probs=66.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHH---HhccCcccceec
Q psy4086 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVK---ALQDKGIHAQMA 130 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~---~l~g~~i~~~~~ 130 (305)
...++|||+|||+++++++|+++|++||.|.+|+|++++ +++++|||||+|.+.++|++|++ .|+|+.|.+...
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVESQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTTCCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHhCCCeECCEEEEEEEC
Confidence 355789999999999999999999999999999999999 89999999999999999999999 566666654443
No 265
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.8e-17 Score=122.47 Aligned_cols=75 Identities=17% Similarity=0.307 Sum_probs=67.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCC-eeEEEEe-eCCCCCCccceEEEEecchhhHHHHHHHhc--cCcccceecc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGP-IISTKAI-LDKTTNKCRGYGFVDFESGGYALAAVKALQ--DKGIHAQMAR 131 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~-i~~~~i~-~~~~~g~~~G~afV~f~~~~~A~~a~~~l~--g~~i~~~~~~ 131 (305)
..++|||+|||+++|+++|+++|++||. |.+|.++ .++.+++++|||||+|.+.++|++|++.|| +..+.++.++
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 4578999999999999999999999998 9999999 888889999999999999999999999996 4777666554
No 266
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.3e-16 Score=116.63 Aligned_cols=79 Identities=29% Similarity=0.326 Sum_probs=71.0
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEE-EEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEE
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVST-RILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVK 213 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v-~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~ 213 (305)
...++|||+|||+++++++|+++|++||.|.+| .|+.++ ..+.|||+|.+.++|++|++.|||..|.| +.|+|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~---~~~~afV~f~~~~~a~~Ai~~l~g~~~~g--~~l~V~ 87 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDS---ETAVVNVTYSSKDQARQALDKLNGFQLEN--FTLKVA 87 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSS---SSEEEEEEESSHHHHHHHHHHHTTCBCSS--CBCEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEECCHHHHHHHHHHhCCCEECC--cEEEEE
Confidence 446889999999999999999999999999999 488774 23349999999999999999999999999 779999
Q ss_pred eccCC
Q psy4086 214 FADSG 218 (305)
Q Consensus 214 ~a~~~ 218 (305)
++.++
T Consensus 88 ~a~~~ 92 (96)
T 2e44_A 88 YIPDE 92 (96)
T ss_dssp ECCCC
T ss_pred EcCcc
Confidence 99876
No 267
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=6.2e-17 Score=119.36 Aligned_cols=69 Identities=14% Similarity=0.224 Sum_probs=60.3
Q ss_pred CCCeEEEcCCCC-CCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCc--ccceecc
Q psy4086 57 SKTNLYIRGLTQ-DTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKG--IHAQMAR 131 (305)
Q Consensus 57 ~~~~l~V~~Lp~-~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~--i~~~~~~ 131 (305)
..++|||+|||+ ++|+++|+++|++||.|.+|.|+++ +|||||+|.+.++|++|++.||+.. |.++.+.
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 357799999999 9999999999999999999999865 4799999999999999999988653 5665544
No 268
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.4e-16 Score=117.51 Aligned_cols=69 Identities=16% Similarity=0.274 Sum_probs=59.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhc--cCcccceecc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQ--DKGIHAQMAR 131 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~--g~~i~~~~~~ 131 (305)
..++|||+|||+++++++|+++|++||.|.+|.|+++ ||||||+|.+.++|++|++.|+ +..|.++.+.
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 3467999999999999999999999999999998864 7899999999999999999764 3445555444
No 269
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.4e-16 Score=118.22 Aligned_cols=68 Identities=24% Similarity=0.291 Sum_probs=58.5
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCc--ccceecc
Q psy4086 58 KTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKG--IHAQMAR 131 (305)
Q Consensus 58 ~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~--i~~~~~~ 131 (305)
.++|||+|||+++++++|+++|++||.|.+|.|+++ ||||||+|.+.++|++|++.|++.. |.++.++
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 15 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 467999999999999999999999999999998863 6899999999999999999876543 4444433
No 270
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.69 E-value=8.5e-17 Score=123.25 Aligned_cols=78 Identities=12% Similarity=0.143 Sum_probs=70.5
Q ss_pred CceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccE-EEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEecc
Q psy4086 138 TNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGV-GFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFAD 216 (305)
Q Consensus 138 ~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~-afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~ 216 (305)
-.|||+||++.+|+++|+++|++||.|.+|+|..+ .++| |||+|.+.++|++|++.|||..|.+..+.|+|.|++
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak 104 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 104 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECS
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecC
Confidence 45889999999999999999999999999998864 3677 999999999999999999999998855779999998
Q ss_pred CCC
Q psy4086 217 SGL 219 (305)
Q Consensus 217 ~~~ 219 (305)
...
T Consensus 105 ~~~ 107 (130)
T 3zzy_A 105 LTS 107 (130)
T ss_dssp CSS
T ss_pred CCc
Confidence 754
No 271
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.69 E-value=1e-16 Score=129.27 Aligned_cols=76 Identities=25% Similarity=0.435 Sum_probs=70.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
...++|||+|||+++++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++||+.|||..|.++.+.
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 145 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 145 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 4467899999999999999999999999999999999999999999999999999999999999999888776654
No 272
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.3e-16 Score=118.07 Aligned_cols=73 Identities=30% Similarity=0.539 Sum_probs=65.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
...++|||+|||+++|+++|+++|+.| ..|+++.++.+++++|||||+|.+.++|++|++.|||..|.++.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 85 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 345779999999999999999999977 4788999988999999999999999999999999999888777655
No 273
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=2.3e-17 Score=126.09 Aligned_cols=82 Identities=6% Similarity=0.124 Sum_probs=73.9
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCe----EEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccE
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTV----VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPL 210 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v----~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l 210 (305)
....+|||+|||+++|+++|+++|+.||.| ..|.|+.+++|+++|||||+|.+.++|++||+. |+..|.+ +.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~g--R~i 97 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGK--RYI 97 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSS--CEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCC--eEE
Confidence 456899999999999999999999999875 689999998999999999999999999999986 9999999 679
Q ss_pred EEEeccCCC
Q psy4086 211 LVKFADSGL 219 (305)
Q Consensus 211 ~v~~a~~~~ 219 (305)
.|..+....
T Consensus 98 ~V~~a~~~e 106 (123)
T 2dha_A 98 ELFRSTAAE 106 (123)
T ss_dssp CCEEECHHH
T ss_pred EEEECCHHH
Confidence 998876543
No 274
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.69 E-value=1.7e-16 Score=120.97 Aligned_cols=76 Identities=17% Similarity=0.132 Sum_probs=68.4
Q ss_pred ceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccE-EEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEeccC
Q psy4086 139 NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGV-GFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADS 217 (305)
Q Consensus 139 ~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~-afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~~ 217 (305)
.|||+||++.+++++|+++|++||.|++|.|+.. .|| |||+|.+.++|++|++.|||..|.+..+.|+|.||+.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~ 101 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARP 101 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecC
Confidence 3689999999999999999999999999999753 376 9999999999999999999999988546799999987
Q ss_pred CC
Q psy4086 218 GL 219 (305)
Q Consensus 218 ~~ 219 (305)
+.
T Consensus 102 ~~ 103 (124)
T 2e5i_A 102 TR 103 (124)
T ss_dssp SC
T ss_pred Cc
Confidence 54
No 275
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=6.9e-17 Score=119.34 Aligned_cols=71 Identities=23% Similarity=0.351 Sum_probs=63.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
..++|||+|||+++|+++|+++|++||.| +++.+ .+++++|||||+|.+.++|++|++.||+..|.++.++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 84 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR 84 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEE
Confidence 45789999999999999999999999976 56666 5799999999999999999999999998888777655
No 276
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.68 E-value=1.7e-16 Score=116.02 Aligned_cols=69 Identities=26% Similarity=0.322 Sum_probs=60.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCc--ccceecc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKG--IHAQMAR 131 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~--i~~~~~~ 131 (305)
.+++|||+|||+++|+++|+++|++||.|.++++++ .||||||+|.+.++|.+|++.|++.. |.++.+.
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 346799999999999999999999999999999985 46899999999999999999998775 4455443
No 277
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=9.5e-17 Score=123.39 Aligned_cols=73 Identities=18% Similarity=0.237 Sum_probs=64.5
Q ss_pred CCCeEEEcCCCCCCcHHHHH----HHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceeccc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLI----NMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQ 132 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~----~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~ 132 (305)
..++|||+|||+++++++|+ ++|++||+|.+|.+.+ +++++|||||+|.+.++|++|++.|||..|.++.++.
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 35779999999999999876 6999999999988753 6789999999999999999999999999888876653
No 278
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=2.8e-16 Score=115.17 Aligned_cols=69 Identities=20% Similarity=0.341 Sum_probs=61.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCccc--ceecc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIH--AQMAR 131 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~--~~~~~ 131 (305)
..++|||+|||+++|+++|+++|++||.|.+|.++++ +|||||+|.+.++|++|++.|||..|. ++.++
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 3467999999999999999999999999999998754 679999999999999999999998887 65554
No 279
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.2e-16 Score=119.56 Aligned_cols=70 Identities=16% Similarity=0.259 Sum_probs=59.4
Q ss_pred CCCCeEEEcCCCCC-CcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccC--cccceecc
Q psy4086 56 LSKTNLYIRGLTQD-TTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDK--GIHAQMAR 131 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~-~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~--~i~~~~~~ 131 (305)
...++|||+|||++ +++++|+++|++||+|.+|.|++ +||||||+|.+.++|++|++.||+. .|.++.++
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 34678999999998 99999999999999999999974 4789999999999999999987643 35554443
No 280
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.68 E-value=1.4e-16 Score=133.84 Aligned_cols=82 Identities=17% Similarity=0.333 Sum_probs=76.5
Q ss_pred CCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q psy4086 136 DPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKF 214 (305)
Q Consensus 136 ~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~ 214 (305)
+.++|||+|||+++||++|+++|++||.|++|+|++|+ +++++|||||+|.+.++|++||+.||+..+.+ +.|++.+
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g--~~i~~~~ 91 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG--KPVRIMW 91 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT--EECEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCC--ccccccc
Confidence 45789999999999999999999999999999999998 89999999999999999999999999999999 7799999
Q ss_pred ccCCC
Q psy4086 215 ADSGL 219 (305)
Q Consensus 215 a~~~~ 219 (305)
+....
T Consensus 92 ~~~~~ 96 (213)
T 4f02_A 92 SQRDP 96 (213)
T ss_dssp CCCCT
T ss_pred ccccc
Confidence 87644
No 281
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.68 E-value=7.8e-17 Score=123.44 Aligned_cols=73 Identities=22% Similarity=0.308 Sum_probs=64.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhccCCee--EEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPII--STKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~--~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
...++|||+|||+++|+++|+++|+.| .|. +|+|++|+. |+++|||||+|.+.++|++|++. ++..|.++.++
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~ 114 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIE 114 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEE
Confidence 455779999999999999999999999 677 899999986 99999999999999999999984 66777766543
No 282
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.68 E-value=4.9e-17 Score=124.54 Aligned_cols=80 Identities=10% Similarity=0.193 Sum_probs=72.2
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeE--EEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEE
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVV--STRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLV 212 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~--~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v 212 (305)
...++|||+|||+++|+++|+++|+.| .|+ +|+|+.|++|+++|||||+|.+.++|++||+. ++..|.+ +.|+|
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~g--R~I~V 115 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGH--RYIEV 115 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTT--BCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECC--EEEEE
Confidence 456789999999999999999999999 677 99999998899999999999999999999985 7799999 77999
Q ss_pred EeccCC
Q psy4086 213 KFADSG 218 (305)
Q Consensus 213 ~~a~~~ 218 (305)
..+..+
T Consensus 116 ~~a~~~ 121 (126)
T 2hgm_A 116 FKSSQE 121 (126)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 887653
No 283
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.6e-16 Score=115.39 Aligned_cols=71 Identities=20% Similarity=0.280 Sum_probs=62.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
...++|||+|||+++++++|+++|++||.|. ++++.+ +++|||||+|.+.++|++|++.|||..|.++.++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLR 87 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 3457899999999999999999999999997 777754 5789999999999999999999999888776654
No 284
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=4.9e-17 Score=122.95 Aligned_cols=71 Identities=17% Similarity=0.346 Sum_probs=63.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCC---CCccceEEEEecchhhHHHHHHHh---ccCcccce
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTT---NKCRGYGFVDFESGGYALAAVKAL---QDKGIHAQ 128 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~---g~~~G~afV~f~~~~~A~~a~~~l---~g~~i~~~ 128 (305)
..++|||+|||+++|+++|+++|++||+|. +.++.++.+ |+++|||||+|.+.++|++|++.| ||+.+.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEEec
Confidence 347799999999999999999999999999 888888877 799999999999999999999998 66655443
No 285
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.68 E-value=5.6e-17 Score=122.25 Aligned_cols=77 Identities=17% Similarity=0.098 Sum_probs=67.8
Q ss_pred CeEEEcCC----CCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecc----hhh----HHHHHH--HhccCc
Q psy4086 59 TNLYIRGL----TQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFES----GGY----ALAAVK--ALQDKG 124 (305)
Q Consensus 59 ~~l~V~~L----p~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~----~~~----A~~a~~--~l~g~~ 124 (305)
+.|||+|| |+.+++++|+++|+.||+|.+|.++.|+.||+++|||||+|.+ +++ |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 9999999999999999999999999999999999999999996 444 788888 689999
Q ss_pred ccceecccccC
Q psy4086 125 IHAQMARQQEQ 135 (305)
Q Consensus 125 i~~~~~~~~~~ 135 (305)
|.++.++..-.
T Consensus 83 I~Gr~irV~ln 93 (136)
T 2j8a_A 83 IMGFKFEVILN 93 (136)
T ss_dssp ETTEEEEEEEC
T ss_pred ecCcEEEEEEC
Confidence 99987764433
No 286
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.7e-16 Score=115.62 Aligned_cols=79 Identities=11% Similarity=0.233 Sum_probs=68.6
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEE
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVK 213 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~ 213 (305)
...++|||+|||+++++++|+++|++||.|.+| +.++ ++. ||||+|.+.++|++||+ |||..|.| +.|+|+
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g--~~l~V~ 77 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGG--HRLRVR 77 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETT--EECCCB
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECC--EEEEEE
Confidence 345789999999999999999999999999987 4444 443 99999999999999999 99999999 779999
Q ss_pred eccCCCcC
Q psy4086 214 FADSGLKK 221 (305)
Q Consensus 214 ~a~~~~~~ 221 (305)
++..+...
T Consensus 78 ~a~~~~~~ 85 (94)
T 2e5g_A 78 PREQKEFQ 85 (94)
T ss_dssp CSCCSCCC
T ss_pred ECCcCCCC
Confidence 88765443
No 287
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.67 E-value=2.2e-17 Score=122.05 Aligned_cols=73 Identities=25% Similarity=0.314 Sum_probs=66.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
..++|||+|||+++|+++|+++|++||.|.. .++.++.+++++|||||+|.+.++|++|++ |||..|.++.++
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~ 88 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIK 88 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEE
Confidence 4578999999999999999999999999988 777777789999999999999999999999 999988877655
No 288
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.5e-16 Score=112.27 Aligned_cols=73 Identities=21% Similarity=0.301 Sum_probs=65.1
Q ss_pred CCc-eEEecCCCCCCHHH----HHHHHhhC-CCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccE
Q psy4086 137 PTN-LYIANLPLNFKECD----LESLLAKY-VTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPL 210 (305)
Q Consensus 137 ~~~-l~V~nlp~~~te~~----l~~~F~~~-g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l 210 (305)
..+ |||+|||+.+++++ |+++|++| |+|.+| ++ |+|||+|.+.++|++|++.|||..+.| |+|
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tg---G~AfV~F~~~esA~~A~~~l~G~~l~g--r~i 76 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TG---CSAILRFINQDSAERAQKRMENEDVFG--NRI 76 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CT---TCEEEEESSHHHHHHHHHHHTTCCSSS--SCC
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ec---CEEEEEECCHHHHHHHHHHhcCCccCC--ceE
Confidence 445 99999999999987 55899999 599998 22 899999999999999999999999999 789
Q ss_pred EEEeccCCCc
Q psy4086 211 LVKFADSGLK 220 (305)
Q Consensus 211 ~v~~a~~~~~ 220 (305)
+|.||..+..
T Consensus 77 ~v~~A~~~sd 86 (96)
T 2diu_A 77 IVSFTPKNRE 86 (96)
T ss_dssp EEESSCCSCC
T ss_pred EEEecCCCcc
Confidence 9999998654
No 289
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.67 E-value=1.5e-16 Score=119.00 Aligned_cols=71 Identities=27% Similarity=0.532 Sum_probs=63.6
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 53 PEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 53 ~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
..+...++|||+|||+++|+++|+++|++||.|.+|.++ +|||||+|.+.++|++|++.|||..|.++.++
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 96 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLE 96 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 334556889999999999999999999999999999997 68999999999999999999999988887665
No 290
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.67 E-value=2.9e-17 Score=121.62 Aligned_cols=81 Identities=20% Similarity=0.415 Sum_probs=74.5
Q ss_pred CCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEec
Q psy4086 136 DPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFA 215 (305)
Q Consensus 136 ~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a 215 (305)
..++|||+|||+++++++|+++|+.||.|.+|+|+.++++.++|||||+|.+.++|++|++ ++..+.| +.|.|.++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g--~~l~v~~a 83 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHG--KKLKLGPA 83 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETT--EECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECC--EEEEEEEC
Confidence 4578999999999999999999999999999999999988999999999999999999998 8999999 77999998
Q ss_pred cCCCc
Q psy4086 216 DSGLK 220 (305)
Q Consensus 216 ~~~~~ 220 (305)
..+..
T Consensus 84 ~~~~~ 88 (102)
T 2xs2_A 84 IRKQN 88 (102)
T ss_dssp EECC-
T ss_pred CcCcc
Confidence 76543
No 291
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.2e-16 Score=119.47 Aligned_cols=69 Identities=16% Similarity=0.247 Sum_probs=59.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhcc--Ccccceecc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQD--KGIHAQMAR 131 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g--~~i~~~~~~ 131 (305)
..++|||+|||+++|+++|+++|++||.|.+|+|+++ ||||||+|.+.++|++|++.|++ ..|.++.++
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 4577999999999999999999999999999999875 68999999999999999998763 345554443
No 292
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.67 E-value=5.3e-16 Score=116.39 Aligned_cols=67 Identities=22% Similarity=0.393 Sum_probs=61.5
Q ss_pred CCCeEEEcCCCCC-CcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 57 SKTNLYIRGLTQD-TTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 57 ~~~~l~V~~Lp~~-~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
..++|||+|||++ +++++|+++|++||.|.+|.| ++|||||+|.+.++|++|++.|||..|.++.++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 93 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLD 93 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 4578999999999 999999999999999999998 578999999999999999999999888877665
No 293
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.67 E-value=7.3e-17 Score=120.98 Aligned_cols=72 Identities=13% Similarity=0.219 Sum_probs=64.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccC-CeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceeccc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYG-PIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQ 132 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G-~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~ 132 (305)
..++|||+|||+++++++|+++|++|| +|..+.|.. ++++|||||+|.+.++|++|++.|||..|.++.++.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V 99 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 457899999999999999999999999 899999864 347899999999999999999999999998887653
No 294
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.7e-16 Score=112.28 Aligned_cols=70 Identities=23% Similarity=0.317 Sum_probs=62.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHh-ccCcccceecc
Q psy4086 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKAL-QDKGIHAQMAR 131 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l-~g~~i~~~~~~ 131 (305)
...++|||+|||+++++++|+++|++||.|.+|++++ ++|||||+|.+.++|++|++.| |+..+.++.++
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~ 80 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLN 80 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEE
Confidence 4457799999999999999999999999999999986 3689999999999999999998 88888776654
No 295
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=5.8e-17 Score=123.82 Aligned_cols=72 Identities=19% Similarity=0.273 Sum_probs=64.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCe----eEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceec
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPI----ISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMA 130 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i----~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~ 130 (305)
..++|||+|||+++|+++|+++|++||+| ..|.|++++ +|+++|||||+|.+.++|++|++. |++.|..+.+
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 45789999999999999999999999975 689999995 899999999999999999999995 8877776654
No 296
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=3.1e-16 Score=115.79 Aligned_cols=71 Identities=23% Similarity=0.358 Sum_probs=64.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecccc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQ 133 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~~ 133 (305)
..++|||+|||.++++++|+++|++||.|.++++. +++|||||+|.+.++|++|++.|||..|.++.++..
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 96 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTG 96 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 35789999999999999999999999999999997 357899999999999999999999999888776543
No 297
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.67 E-value=8.9e-17 Score=121.17 Aligned_cols=80 Identities=11% Similarity=0.150 Sum_probs=71.4
Q ss_pred CCceEEecC----CCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecC----HHH----HHHHHH--HhCCC
Q psy4086 137 PTNLYIANL----PLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLES----KDK----CDQMIQ--LFNGS 201 (305)
Q Consensus 137 ~~~l~V~nl----p~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~----~~~----A~~Ai~--~l~g~ 201 (305)
+.+|||+|| ++.+++++|+++|+.||+|.+|+++.|+ +|.++|||||+|.+ .++ |.+|+. .|||.
T Consensus 2 p~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CCEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 368999999 9999999999999999999999999999 99999999999996 333 889988 78999
Q ss_pred CCCCCCccEEEEeccCC
Q psy4086 202 TLPGSKEPLLVKFADSG 218 (305)
Q Consensus 202 ~~~g~~~~l~v~~a~~~ 218 (305)
.|+| +.|+|.+.+..
T Consensus 82 ~I~G--r~irV~ln~~g 96 (136)
T 2j8a_A 82 FIMG--FKFEVILNKHS 96 (136)
T ss_dssp EETT--EEEEEEECCTT
T ss_pred eecC--cEEEEEECccc
Confidence 9999 77999996653
No 298
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=4e-16 Score=112.68 Aligned_cols=67 Identities=25% Similarity=0.516 Sum_probs=61.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
..++|||+|||+++++++|+++|++||+|.+|+++ +|||||+|.+.++|++|++.||+..|.++.++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 73 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNIN 73 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCE
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEE
Confidence 45789999999999999999999999999999987 57999999999999999999998887776655
No 299
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.67 E-value=1.1e-16 Score=115.18 Aligned_cols=75 Identities=20% Similarity=0.395 Sum_probs=69.7
Q ss_pred CCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEec
Q psy4086 136 DPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFA 215 (305)
Q Consensus 136 ~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a 215 (305)
..++|||+|||+++++++|+++|++| .|.++++. +++|||||+|.+.++|++|++.|||..+.| +.|+|+++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g--~~l~V~~a 75 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRG--KDLIVQLQ 75 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETT--EEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECC--cEEEEEEc
Confidence 46789999999999999999999999 99999985 578999999999999999999999999999 77999998
Q ss_pred cCC
Q psy4086 216 DSG 218 (305)
Q Consensus 216 ~~~ 218 (305)
...
T Consensus 76 ~~~ 78 (88)
T 1wg1_A 76 PTD 78 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 300
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.67 E-value=1.5e-15 Score=123.74 Aligned_cols=76 Identities=18% Similarity=0.296 Sum_probs=70.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 55 QLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 55 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
....++|||+|||+++++++|+++|++||+|++|.|+.++ ++.++|||||+|.+.++|++|++.|||..|.++.++
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~ 160 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMD 160 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEE
Confidence 3456789999999999999999999999999999999999 899999999999999999999999999888776655
No 301
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.67 E-value=1.5e-16 Score=114.76 Aligned_cols=79 Identities=11% Similarity=0.222 Sum_probs=63.7
Q ss_pred cCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEE
Q psy4086 134 EQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVK 213 (305)
Q Consensus 134 ~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~ 213 (305)
.....+|||+|||+++|+++|+++|++||.|.+|+|+.+ ++|||||+|.+.++|++ |++..+.+..+.|.|+
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHIS 79 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEE
Confidence 345789999999999999999999999999999999875 78999999999999883 5677665433889999
Q ss_pred eccCCCc
Q psy4086 214 FADSGLK 220 (305)
Q Consensus 214 ~a~~~~~ 220 (305)
++.++..
T Consensus 80 ~a~~k~~ 86 (89)
T 3d2w_A 80 NAEPKHN 86 (89)
T ss_dssp ECC----
T ss_pred EcCCCCc
Confidence 9987543
No 302
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.66 E-value=3.5e-17 Score=127.70 Aligned_cols=72 Identities=18% Similarity=0.285 Sum_probs=65.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
..++|||+|||+++|+++|+++|++|| |++|+|++|+. ++++|||||+|.+.++|++|| .+|+..|..+.++
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~ 116 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIE 116 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEE
Confidence 446799999999999999999999999 77999999986 999999999999999999999 6898888877665
No 303
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.66 E-value=7.1e-17 Score=127.07 Aligned_cols=86 Identities=28% Similarity=0.439 Sum_probs=73.6
Q ss_pred cCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEE------EEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCC
Q psy4086 134 EQDPTNLYIANLPLNFKECDLESLLAKYVTVVST------RILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSK 207 (305)
Q Consensus 134 ~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v------~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 207 (305)
....++|||+|||+++|+++|+++|+.||.|..+ .+....++.++|||||+|.+.++|.+||+.|||..|.|
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g-- 119 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG-- 119 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETT--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC--
Confidence 3456889999999999999999999999998774 12222367899999999999999999999999999999
Q ss_pred ccEEEEeccCCCcC
Q psy4086 208 EPLLVKFADSGLKK 221 (305)
Q Consensus 208 ~~l~v~~a~~~~~~ 221 (305)
++|+|.|+.....+
T Consensus 120 ~~l~V~~a~~~~~~ 133 (143)
T 3egn_A 120 KPMVVQFARSARPK 133 (143)
T ss_dssp EECEEEECCCSCC-
T ss_pred cEEEEEECCCCCCc
Confidence 78999999875544
No 304
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.66 E-value=4.3e-16 Score=125.06 Aligned_cols=82 Identities=26% Similarity=0.427 Sum_probs=77.1
Q ss_pred CCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEec
Q psy4086 137 PTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFA 215 (305)
Q Consensus 137 ~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a 215 (305)
.++|||+|||.++++++|+++|+.||.|.+++++.++ +|.++|||||+|.+.++|.+|++.|||..+.+ ++|+|.++
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g--~~l~v~~~ 79 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT--KTIKVSYA 79 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT--EECEEEEC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCC--ceEEEEec
Confidence 5789999999999999999999999999999999998 89999999999999999999999999999999 77999998
Q ss_pred cCCCc
Q psy4086 216 DSGLK 220 (305)
Q Consensus 216 ~~~~~ 220 (305)
.+...
T Consensus 80 ~~~~~ 84 (167)
T 1fxl_A 80 RPSSA 84 (167)
T ss_dssp CCCCG
T ss_pred CCCcc
Confidence 86543
No 305
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=7.4e-17 Score=122.07 Aligned_cols=75 Identities=17% Similarity=0.354 Sum_probs=62.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
..++|||+|||+++|+++|+++|++||.|..+.+..+..+++++|||||+|.+.++|++|++.|||..|.++.++
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 98 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILV 98 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 457899999999999999999999999984333322222788999999999999999999999998887766554
No 306
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=8.2e-18 Score=127.63 Aligned_cols=76 Identities=21% Similarity=0.322 Sum_probs=69.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhccCCeeE--------EEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccc
Q psy4086 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIIS--------TKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHA 127 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~--------~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~ 127 (305)
...++|||+|||+++++++|+++|++||.|.. |+|+.++.+++++|||||+|.+.++|++|++.|||..|.+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 35577999999999999999999999999998 9999998899999999999999999999999999888777
Q ss_pred eecc
Q psy4086 128 QMAR 131 (305)
Q Consensus 128 ~~~~ 131 (305)
+.++
T Consensus 85 ~~l~ 88 (116)
T 2lcw_A 85 NPIK 88 (116)
Confidence 6554
No 307
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.1e-16 Score=116.82 Aligned_cols=71 Identities=21% Similarity=0.438 Sum_probs=64.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 55 QLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 55 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
....++|||+|||.++++++|+++|++||.|.+|+|+++ +|||||+|.+.++|++|++.|||..|.++.++
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 92 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 92 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 345678999999999999999999999999999999876 68999999999999999999999888877665
No 308
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.65 E-value=5.9e-16 Score=113.47 Aligned_cols=69 Identities=20% Similarity=0.372 Sum_probs=62.4
Q ss_pred CCCCCeEEEcCCCC-CCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 55 QLSKTNLYIRGLTQ-DTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 55 ~~~~~~l~V~~Lp~-~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
....++|||+|||+ ++++++|+++|++||.|.++++. +|||||+|.+.++|++|++.|||..+.++.++
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34567899999998 99999999999999999999983 78999999999999999999999988877655
No 309
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.65 E-value=3.9e-16 Score=125.62 Aligned_cols=82 Identities=28% Similarity=0.433 Sum_probs=76.9
Q ss_pred CCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q psy4086 136 DPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKF 214 (305)
Q Consensus 136 ~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~ 214 (305)
..++|||+|||.++++++|+++|+.||.|.+++++.++ ++.++|||||+|.+.++|.+|++.|+|..+.+ +.|.|.+
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g--~~l~v~~ 79 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRN--KRLKVSY 79 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT--EECEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCC--cEEEEEe
Confidence 45789999999999999999999999999999999987 88899999999999999999999999999999 7799999
Q ss_pred ccCCC
Q psy4086 215 ADSGL 219 (305)
Q Consensus 215 a~~~~ 219 (305)
+....
T Consensus 80 ~~~~~ 84 (168)
T 1b7f_A 80 ARPGG 84 (168)
T ss_dssp CCCCS
T ss_pred cCCCc
Confidence 88654
No 310
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.65 E-value=5.7e-16 Score=124.19 Aligned_cols=81 Identities=19% Similarity=0.285 Sum_probs=75.2
Q ss_pred CceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEeccC
Q psy4086 138 TNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADS 217 (305)
Q Consensus 138 ~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~~ 217 (305)
++|||+|||.++++++|+++|++||.|.+++++.++++.++|||||+|.+.++|.+|++.|||..+.+ +.|.|.++..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g--~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIEN--NIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETT--EECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCC--CeeEEEEcCC
Confidence 58999999999999999999999999999999999988899999999999999999999999999999 7799999876
Q ss_pred CCc
Q psy4086 218 GLK 220 (305)
Q Consensus 218 ~~~ 220 (305)
...
T Consensus 79 ~~~ 81 (166)
T 3md3_A 79 SQQ 81 (166)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 311
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=2.2e-16 Score=118.74 Aligned_cols=69 Identities=19% Similarity=0.104 Sum_probs=62.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
..++|||+|||+++++++|+++|++||.|.+|.|++ ++|||||+|.+.++|++|++.|||..|.++.+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 77 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLY 77 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Confidence 467899999999999999999999999999999874 568999999999999999999999988877655
No 312
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.6e-16 Score=116.51 Aligned_cols=62 Identities=16% Similarity=0.258 Sum_probs=57.1
Q ss_pred CCeEEE--cCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcc
Q psy4086 58 KTNLYI--RGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGI 125 (305)
Q Consensus 58 ~~~l~V--~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i 125 (305)
.++||| |||++++++++|+++|++||+|.+|.|+. .||||||+|.+.++|++|++.|||+.|
T Consensus 25 t~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~ 88 (114)
T 2cq2_A 25 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEV 88 (114)
T ss_dssp CSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 467999 77999999999999999999999998763 378999999999999999999999987
No 313
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.64 E-value=6.8e-16 Score=114.41 Aligned_cols=67 Identities=22% Similarity=0.443 Sum_probs=60.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
..++|||+|||+++|+++|+++|++||.|.+|+|+ +|||||+|.+.++|++|++.||+..|.++.++
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 76 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIE 76 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEE
Confidence 34779999999999999999999999999999987 45999999999999999999998887776654
No 314
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.64 E-value=2.1e-16 Score=115.73 Aligned_cols=73 Identities=23% Similarity=0.347 Sum_probs=65.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHH----HHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 56 LSKTNLYIRGLTQDTTDKDLI----NMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~~L~----~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
...++|||+|||+++++++|+ ++|++||.|.+|.+++ ++.++|||||+|.+.++|++|++.|||..+.++.++
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 345789999999999999999 9999999999999874 578899999999999999999999999988777655
No 315
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.64 E-value=2.7e-16 Score=119.06 Aligned_cols=66 Identities=21% Similarity=0.305 Sum_probs=60.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCccccee
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQM 129 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~ 129 (305)
..++|||+|||+++++++|+++|++||+|.+|.|+.+ |||||+|.+.++|++||+.|||+.|.++.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 3477999999999999999999999999999999876 79999999999999999999999888765
No 316
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.8e-16 Score=114.09 Aligned_cols=78 Identities=13% Similarity=0.287 Sum_probs=66.0
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCC--CCCCccEEE
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTL--PGSKEPLLV 212 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~~~l~v 212 (305)
...++|||+|||+++++++|+++|++||.|.+|+|+.+ ++|||||+|.+.++|++| ++..+ .+ +.|+|
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~----~~~~~~~~g--~~l~v 72 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSL----CGEDLIIKG--ISVHI 72 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHT----TTCEEEETT--EEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHH----hcCCceeCC--EEEEE
Confidence 35689999999999999999999999999999999865 689999999999999754 44444 55 78999
Q ss_pred EeccCCCcCC
Q psy4086 213 KFADSGLKKR 222 (305)
Q Consensus 213 ~~a~~~~~~~ 222 (305)
.++.++....
T Consensus 73 ~~a~~~~~~~ 82 (88)
T 1wf0_A 73 SNAEPKHNSN 82 (88)
T ss_dssp ECCCCCCCCC
T ss_pred EecCCCCCCC
Confidence 9988765543
No 317
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=9e-16 Score=111.29 Aligned_cols=69 Identities=22% Similarity=0.443 Sum_probs=62.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 55 QLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 55 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
....++|||+|||+++++++|+++|++||.|.+|.+++ +||||+|.+.++|++|++.|||..|.++.++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 75 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMH 75 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 34567899999999999999999999999999999973 3999999999999999999999888777665
No 318
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.1e-15 Score=110.85 Aligned_cols=68 Identities=29% Similarity=0.407 Sum_probs=61.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcc--CCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 56 LSKTNLYIRGLTQDTTDKDLINMCSQY--GPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~--G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
...++|||+|||+++|+++|+++|++| |.|.+|++. +|||||+|.+.++|++|++.|||..|.++.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 345789999999999999999999999 999988864 56999999999999999999999888777655
No 319
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=7.6e-16 Score=112.54 Aligned_cols=71 Identities=21% Similarity=0.164 Sum_probs=63.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEE-EEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIIST-KAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~-~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
..++|||+|||+++++++|+++|++||.|.+| .|+.++.++ .|||+|.+.++|++|++.|||..|.++.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 85 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLK 85 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCE
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 34779999999999999999999999999999 588887654 399999999999999999999988877654
No 320
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.1e-15 Score=115.38 Aligned_cols=75 Identities=13% Similarity=0.262 Sum_probs=63.6
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-C---CCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccE
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-N---NTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPL 210 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~---g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l 210 (305)
...++|||+|||+++++++|+++|++||.|. +.++.++ + |+++|||||+|.+.++|++||+.|++ ++| +.|
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G--~~~ 80 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDG--KLY 80 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETT--EEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCC--cEE
Confidence 4568999999999999999999999999999 8888776 4 78999999999999999999999832 444 334
Q ss_pred EEEe
Q psy4086 211 LVKF 214 (305)
Q Consensus 211 ~v~~ 214 (305)
.+..
T Consensus 81 ~~~~ 84 (114)
T 2dnl_A 81 LCVS 84 (114)
T ss_dssp EEEC
T ss_pred Eecc
Confidence 4443
No 321
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.63 E-value=1.3e-15 Score=116.26 Aligned_cols=78 Identities=15% Similarity=0.267 Sum_probs=70.1
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKF 214 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~ 214 (305)
...++|||+|| ++++++|+++|++||.|.+|.|. .++|||||+|.+.++|++||+.|||..|.| +.|+|.|
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g--~~l~V~~ 107 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVES--VQLKVNI 107 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSS--CBCEEEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECC--eEEEEEE
Confidence 45688999996 69999999999999999999986 568999999999999999999999999999 7799999
Q ss_pred ccCCCcC
Q psy4086 215 ADSGLKK 221 (305)
Q Consensus 215 a~~~~~~ 221 (305)
+......
T Consensus 108 a~~~~~~ 114 (121)
T 2bz2_A 108 ARKQPML 114 (121)
T ss_dssp CCSSCC-
T ss_pred eCCCCCC
Confidence 9876443
No 322
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.63 E-value=5e-15 Score=129.49 Aligned_cols=82 Identities=15% Similarity=0.364 Sum_probs=74.8
Q ss_pred cCCCCceEEecCCCCCCHHHHH----HHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCcc
Q psy4086 134 EQDPTNLYIANLPLNFKECDLE----SLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEP 209 (305)
Q Consensus 134 ~~~~~~l~V~nlp~~~te~~l~----~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~ 209 (305)
....++|||+|||+++++++|+ ++|+.||.|.+|+|++ +++++|||||+|.+.++|++||+.|||..|.| +.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~ 81 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYD--KP 81 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCC--cE
Confidence 4567899999999999999977 8999999999999886 56889999999999999999999999999999 77
Q ss_pred EEEEeccCCC
Q psy4086 210 LLVKFADSGL 219 (305)
Q Consensus 210 l~v~~a~~~~ 219 (305)
|+|.|+....
T Consensus 82 l~v~~a~~~~ 91 (282)
T 3pgw_A 82 MRIQYAKTDS 91 (282)
T ss_pred EEEEEeccCc
Confidence 9999997654
No 323
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.2e-15 Score=110.15 Aligned_cols=68 Identities=19% Similarity=0.354 Sum_probs=61.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
...++|||+|||+++|+++|+++|++||.|.+|++++ +||||+|.+.++|++|++.|||..|.++.++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 74 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRIN 74 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 3457799999999999999999999999999999973 3999999999999999999999888877665
No 324
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.62 E-value=1.5e-15 Score=120.46 Aligned_cols=72 Identities=24% Similarity=0.369 Sum_probs=65.4
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 55 QLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 55 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
....++|||+|||+++|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|++|++.|||..|.++.++
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 141 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVR 141 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 345688999999999999999999999999999999876 588999999999999999999999888777655
No 325
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.62 E-value=1e-15 Score=127.70 Aligned_cols=78 Identities=14% Similarity=0.215 Sum_probs=72.1
Q ss_pred CCCceEEecCC-CCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q psy4086 136 DPTNLYIANLP-LNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKF 214 (305)
Q Consensus 136 ~~~~l~V~nlp-~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~ 214 (305)
+.++|||+||+ +.+++++|+++|++||.|.+|+|+.+ .+|||||+|.+.++|++||+.|||..+.| ++|+|.+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g--~~l~v~~ 76 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFG--QKMNVCV 76 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETT--EECEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECC--ceEEEEE
Confidence 46899999999 89999999999999999999999876 37899999999999999999999999999 7899999
Q ss_pred ccCCC
Q psy4086 215 ADSGL 219 (305)
Q Consensus 215 a~~~~ 219 (305)
++...
T Consensus 77 s~~~~ 81 (205)
T 3tyt_A 77 SKQPA 81 (205)
T ss_dssp CSCSC
T ss_pred ccCCc
Confidence 87543
No 326
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.1e-15 Score=111.82 Aligned_cols=68 Identities=21% Similarity=0.388 Sum_probs=60.4
Q ss_pred CCCCeEEEcCCCC-CCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 56 LSKTNLYIRGLTQ-DTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 56 ~~~~~l~V~~Lp~-~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
...++|||+|||+ ++++++|+++|++||.|.+|.|. +|||||+|.+.++|++|++.|||..+.++.++
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 76 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLI 76 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 3457899999998 99999999999999999999984 68999999999999999999998877765544
No 327
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.62 E-value=1.7e-15 Score=127.02 Aligned_cols=81 Identities=16% Similarity=0.241 Sum_probs=73.4
Q ss_pred CCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEec
Q psy4086 137 PTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFA 215 (305)
Q Consensus 137 ~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a 215 (305)
.++|||+|||.++++++|+++|+.||.|.+|+|+.++ ++.++|||||+|.+.++|.+|++.||+..|.+ +.|+|.++
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g--~~l~v~~~ 105 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGG--RNIKVGRP 105 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC---CCCEEECC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCC--eeEEEecC
Confidence 4789999999999999999999999999999999998 88999999999999999999999999999999 67999987
Q ss_pred cCCC
Q psy4086 216 DSGL 219 (305)
Q Consensus 216 ~~~~ 219 (305)
....
T Consensus 106 ~~~~ 109 (216)
T 2qfj_A 106 SNIG 109 (216)
T ss_dssp SCCG
T ss_pred CCcc
Confidence 7654
No 328
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=2.6e-15 Score=109.34 Aligned_cols=71 Identities=15% Similarity=0.367 Sum_probs=62.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecccc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQ 133 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~~ 133 (305)
..++|||+|||+++|+++|+++|++||.|.+| +.++.+++ ||||+|.+.++|++|++ |||..|.++.++..
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~ 77 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVR 77 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCB
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEE
Confidence 34679999999999999999999999999987 66666665 99999999999999999 99999888877644
No 329
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.62 E-value=3.8e-16 Score=114.19 Aligned_cols=72 Identities=17% Similarity=0.238 Sum_probs=63.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 55 QLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 55 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
....++|||+|||+++++++|+++|++||.|..+ ..+++++|||||+|.+.++|++|++.|||..|.++.++
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 84 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVS 84 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 3456789999999999999999999999988765 33688999999999999999999999999888777655
No 330
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.62 E-value=6.9e-16 Score=110.97 Aligned_cols=74 Identities=15% Similarity=0.236 Sum_probs=65.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecccccCC
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQD 136 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~~~~~ 136 (305)
..++|||+|||+++++++|+++|++| .|.++++. +++|||||+|.+.++|++|++.|||..+.++.++.....
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 34779999999999999999999999 99999984 578999999999999999999999999988887754443
Q ss_pred C
Q psy4086 137 P 137 (305)
Q Consensus 137 ~ 137 (305)
.
T Consensus 77 ~ 77 (88)
T 1wg1_A 77 T 77 (88)
T ss_dssp C
T ss_pred C
Confidence 3
No 331
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.1e-15 Score=110.46 Aligned_cols=67 Identities=27% Similarity=0.302 Sum_probs=60.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
..++|||+|| ++|+++|+++|++||+|.+|.|. +++|||||+|.+.++|++|++.|||..|.++.++
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 80 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLK 80 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 4578999996 89999999999999999999984 4688999999999999999999999888777655
No 332
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.61 E-value=2.9e-15 Score=111.23 Aligned_cols=81 Identities=15% Similarity=0.084 Sum_probs=72.0
Q ss_pred CCCCceEEecCCC-----CCCHHHHHHHHhhCCCeEEEEEeeCC--CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCC
Q psy4086 135 QDPTNLYIANLPL-----NFKECDLESLLAKYVTVVSTRILRDN--NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSK 207 (305)
Q Consensus 135 ~~~~~l~V~nlp~-----~~te~~l~~~F~~~g~v~~v~i~~~~--~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 207 (305)
..+++|+|.||.. +-++++|+++|++||.|++|.|+.++ ++.++|||||+|.+.++|.+|++.|||..+.|
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G-- 83 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG-- 83 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT--
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC--
Confidence 4568899999963 23789999999999999999999986 36889999999999999999999999999999
Q ss_pred ccEEEEeccC
Q psy4086 208 EPLLVKFADS 217 (305)
Q Consensus 208 ~~l~v~~a~~ 217 (305)
+.|+|.|+..
T Consensus 84 r~i~v~~a~~ 93 (105)
T 2pe8_A 84 RVVKACFYNL 93 (105)
T ss_dssp EECEEEECCH
T ss_pred cEEEEEEcCH
Confidence 8899999875
No 333
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.61 E-value=1.1e-15 Score=109.46 Aligned_cols=72 Identities=24% Similarity=0.457 Sum_probs=65.9
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhC----C-------CeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCC
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKY----V-------TVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTL 203 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~----g-------~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 203 (305)
...++|||+|||+++++++|+++|++| | .|.++++..+ +|||||+|.+.++|++|+ .|||..+
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 346789999999999999999999999 8 8999998854 899999999999999999 9999999
Q ss_pred CCCCccEEEEe
Q psy4086 204 PGSKEPLLVKF 214 (305)
Q Consensus 204 ~g~~~~l~v~~ 214 (305)
.| +.|+|+.
T Consensus 78 ~g--~~l~V~r 86 (87)
T 2hzc_A 78 QG--QSLKIRR 86 (87)
T ss_dssp TT--EECEEEC
T ss_pred CC--eEEEEeC
Confidence 99 7798874
No 334
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.61 E-value=2.9e-15 Score=120.98 Aligned_cols=74 Identities=19% Similarity=0.377 Sum_probs=70.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 58 KTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 58 ~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
.++|||+|||+++|+++|+++|++||.|..+.+++++.+|+++|||||+|.+.++|++|++.|||..+.++.++
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 167 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLL 167 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECE
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEE
Confidence 57799999999999999999999999999999999998999999999999999999999999999998887654
No 335
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.61 E-value=1.8e-15 Score=120.22 Aligned_cols=70 Identities=14% Similarity=0.139 Sum_probs=62.0
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccc--eecc
Q psy4086 58 KTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHA--QMAR 131 (305)
Q Consensus 58 ~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~--~~~~ 131 (305)
-.+|||+||++.+|+++|+++|++||+|++|+|+.+. ++|||||+|.+.++|++|++.|||+.|.+ +.++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~ 117 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 117 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEE
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEE
Confidence 4569999999999999999999999999999987543 57899999999999999999999998854 4444
No 336
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.61 E-value=1.9e-15 Score=124.76 Aligned_cols=83 Identities=20% Similarity=0.332 Sum_probs=74.6
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEE
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVK 213 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~ 213 (305)
...++|||+|||+++|+++|+++|+.||.|.+|+|+.++ ++.++|||||+|.+.++|++|++. ++..+.| +.|.|.
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g--~~l~v~ 87 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDG--RVVEPK 87 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETT--EECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECC--EEeeee
Confidence 345789999999999999999999999999999999998 789999999999999999999976 8899999 779999
Q ss_pred eccCCCc
Q psy4086 214 FADSGLK 220 (305)
Q Consensus 214 ~a~~~~~ 220 (305)
++.....
T Consensus 88 ~~~~~~~ 94 (196)
T 1l3k_A 88 RAVSRED 94 (196)
T ss_dssp ECCC---
T ss_pred cccCccc
Confidence 9876543
No 337
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=9.3e-15 Score=111.37 Aligned_cols=76 Identities=26% Similarity=0.237 Sum_probs=62.8
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccce-EEEEecchhhHHHHHHHhccCcccc--eecccccC
Q psy4086 59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGY-GFVDFESGGYALAAVKALQDKGIHA--QMARQQEQ 135 (305)
Q Consensus 59 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~-afV~f~~~~~A~~a~~~l~g~~i~~--~~~~~~~~ 135 (305)
..|||+||++.+|+++|+++|++||.|.+|+|+.. .|| |||+|.+.++|++|++.|||..|.+ +.++....
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 45789999999999999999999999999999752 276 9999999999999999999999976 34444333
Q ss_pred CCCce
Q psy4086 136 DPTNL 140 (305)
Q Consensus 136 ~~~~l 140 (305)
....|
T Consensus 100 k~~~l 104 (124)
T 2e5i_A 100 RPTRL 104 (124)
T ss_dssp SCSCC
T ss_pred cCCcc
Confidence 33333
No 338
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.60 E-value=1.8e-15 Score=139.92 Aligned_cols=77 Identities=26% Similarity=0.389 Sum_probs=71.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceeccc
Q psy4086 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQ 132 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~ 132 (305)
...++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.|||..|.++.+..
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V 176 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLV 176 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999888777663
No 339
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1e-15 Score=111.16 Aligned_cols=68 Identities=24% Similarity=0.456 Sum_probs=59.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCC-eeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhcc-Ccccceecc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGP-IISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQD-KGIHAQMAR 131 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~-i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g-~~i~~~~~~ 131 (305)
..++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|++|++.||| ..|.++.++
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 3467999999999999999999999999 6666552 478999999999999999999999 888777665
No 340
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.60 E-value=7.8e-16 Score=110.95 Aligned_cols=55 Identities=22% Similarity=0.396 Sum_probs=49.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHH
Q psy4086 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALA 115 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~ 115 (305)
...++|||+|||+++|+++|+++|++||.|.+|+|+++ +||||||+|.+.++|++
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~ 63 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS 63 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH
Confidence 35578999999999999999999999999999999874 78999999999999984
No 341
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.60 E-value=2.9e-15 Score=114.69 Aligned_cols=71 Identities=14% Similarity=0.164 Sum_probs=62.2
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccce-EEEEecchhhHHHHHHHhccCcccc--eeccccc
Q psy4086 59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGY-GFVDFESGGYALAAVKALQDKGIHA--QMARQQE 134 (305)
Q Consensus 59 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~-afV~f~~~~~A~~a~~~l~g~~i~~--~~~~~~~ 134 (305)
.+|||+||++.+|+++|+++|++||+|.+|+|+.+ .+|| |||+|.+.++|++|++.|||+.|.+ +.++...
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 56899999999999999999999999999998864 3677 9999999999999999999999876 5554333
No 342
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.60 E-value=2.5e-15 Score=127.16 Aligned_cols=79 Identities=20% Similarity=0.370 Sum_probs=70.0
Q ss_pred cCCCCceEEecCCCCC---------CHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCC-
Q psy4086 134 EQDPTNLYIANLPLNF---------KECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTL- 203 (305)
Q Consensus 134 ~~~~~~l~V~nlp~~~---------te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~- 203 (305)
....++|||+||+..+ +|++|+++|++||.|++|+|+. ++|||||+|.+.++|+.|+++|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-----~kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-----SKNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-----CCCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 3456899999999998 7999999999999999999994 589999999999999999999999999
Q ss_pred -----------CCCCccEEEEeccCCC
Q psy4086 204 -----------PGSKEPLLVKFADSGL 219 (305)
Q Consensus 204 -----------~g~~~~l~v~~a~~~~ 219 (305)
.| +.|.|+||....
T Consensus 206 ~~~~~e~~~~~~g--r~L~V~wA~~~p 230 (240)
T 3u1l_A 206 LPSDKEWDDRREG--TGLLVKWANEDP 230 (240)
T ss_dssp CTTSTTGGGGGGS--CCCEEEECC---
T ss_pred ccccccccccCCC--CEEEEEEccCCC
Confidence 66 779999998753
No 343
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.59 E-value=4.4e-15 Score=120.12 Aligned_cols=85 Identities=26% Similarity=0.454 Sum_probs=75.1
Q ss_pred CCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CC--CcccEEEEEecCHHHHHHHHHHhCCCCCC-CCCccEE
Q psy4086 136 DPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NN--TSKGVGFARLESKDKCDQMIQLFNGSTLP-GSKEPLL 211 (305)
Q Consensus 136 ~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~-g~~~~l~ 211 (305)
+.++|||+|||+++++++|+++|++||.|.+|+|++++ ++ .++|||||+|.+.++|++|++.||+..+. +..+.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46789999999999999999999999999999999998 43 79999999999999999999999998764 4347899
Q ss_pred EEeccCCCc
Q psy4086 212 VKFADSGLK 220 (305)
Q Consensus 212 v~~a~~~~~ 220 (305)
+.++.....
T Consensus 82 ~~~~~~~~~ 90 (175)
T 3nmr_A 82 MKPADSEKN 90 (175)
T ss_dssp EEECGGGCC
T ss_pred Ecccccccc
Confidence 998876543
No 344
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.59 E-value=7.7e-15 Score=121.24 Aligned_cols=77 Identities=19% Similarity=0.348 Sum_probs=71.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceeccc
Q psy4086 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQ 132 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~ 132 (305)
...++|||+|||+++++++|+++|++||.|.++++++++.++.++|||||+|.+.++|++|++.|||..|.++.++.
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 188 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLV 188 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 45678999999999999999999999999999999999989999999999999999999999999999888776653
No 345
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.59 E-value=2.4e-15 Score=107.75 Aligned_cols=68 Identities=19% Similarity=0.408 Sum_probs=62.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcc----C-------CeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQY----G-------PIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGI 125 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~----G-------~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i 125 (305)
..++|||+|||+++++++|+++|++| | .|.++.+.++ +|||||+|.+.++|++|+ .|||..+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 45789999999999999999999999 8 8999998754 689999999999999999 9999999
Q ss_pred cceecc
Q psy4086 126 HAQMAR 131 (305)
Q Consensus 126 ~~~~~~ 131 (305)
.++.++
T Consensus 78 ~g~~l~ 83 (87)
T 2hzc_A 78 QGQSLK 83 (87)
T ss_dssp TTEECE
T ss_pred CCeEEE
Confidence 887764
No 346
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.59 E-value=4e-15 Score=122.91 Aligned_cols=80 Identities=19% Similarity=0.293 Sum_probs=73.0
Q ss_pred CCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEecc
Q psy4086 137 PTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFAD 216 (305)
Q Consensus 137 ~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~ 216 (305)
.++|||+|||+++++++|+++|++||.|..|+|+++.++.++|||||+|.+.++|++|++.++ ..+.| +.|.|.++.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~G--r~l~V~~~~ 185 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKE--TDLLILFKD 185 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETT--EECEEEETT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECC--EEEEEEEhH
Confidence 378999999999999999999999999999999999888999999999999999999998665 68999 779999987
Q ss_pred CCC
Q psy4086 217 SGL 219 (305)
Q Consensus 217 ~~~ 219 (305)
.-.
T Consensus 186 ~y~ 188 (193)
T 2voo_A 186 DYF 188 (193)
T ss_dssp TC-
T ss_pred HHH
Confidence 643
No 347
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.58 E-value=6.2e-16 Score=121.62 Aligned_cols=76 Identities=17% Similarity=0.255 Sum_probs=64.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEE--E---eeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceec
Q psy4086 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTK--A---ILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMA 130 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~--i---~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~ 130 (305)
...++|||+|||+++|+++|+++|+.||.|..+. + +....+++++|||||+|.+.++|.+|++.|||..|.++.+
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 3457899999999999999999999999987641 1 1112368899999999999999999999999998887765
Q ss_pred c
Q psy4086 131 R 131 (305)
Q Consensus 131 ~ 131 (305)
+
T Consensus 123 ~ 123 (143)
T 3egn_A 123 V 123 (143)
T ss_dssp E
T ss_pred E
Confidence 5
No 348
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.8e-15 Score=108.71 Aligned_cols=57 Identities=23% Similarity=0.395 Sum_probs=51.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHH
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVK 118 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~ 118 (305)
..++|||+|||+++|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|++|+.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~ 60 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG 60 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc
Confidence 3478999999999999999999999999999999864 68999999999999976543
No 349
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.55 E-value=2.4e-14 Score=106.20 Aligned_cols=75 Identities=15% Similarity=0.224 Sum_probs=65.6
Q ss_pred CCCeEEEcCCCC-----CCcHHHHHHHHhccCCeeEEEEeeCCCC-CCccceEEEEecchhhHHHHHHHhccCcccceec
Q psy4086 57 SKTNLYIRGLTQ-----DTTDKDLINMCSQYGPIISTKAILDKTT-NKCRGYGFVDFESGGYALAAVKALQDKGIHAQMA 130 (305)
Q Consensus 57 ~~~~l~V~~Lp~-----~~t~~~L~~~f~~~G~i~~~~i~~~~~~-g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~ 130 (305)
.+++|+|.||.. +-++++|+++|++||.|.+|.|++++.+ ++++|||||+|.+.++|.+|++.|||+.+.++.+
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 346799999962 2378999999999999999999998754 6899999999999999999999999999988876
Q ss_pred c
Q psy4086 131 R 131 (305)
Q Consensus 131 ~ 131 (305)
+
T Consensus 87 ~ 87 (105)
T 2pe8_A 87 K 87 (105)
T ss_dssp E
T ss_pred E
Confidence 5
No 350
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=2.3e-14 Score=102.14 Aligned_cols=69 Identities=19% Similarity=0.251 Sum_probs=59.0
Q ss_pred CCCeEEEcCCCCCCcHHH----HHHHHhcc-CCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 57 SKTNLYIRGLTQDTTDKD----LINMCSQY-GPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~----L~~~f~~~-G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
..|.|||+|||+++++++ |+++|++| |+|.+| ++ |+|||+|.+.++|++|++.|||..+.++.++
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 345599999999999988 55899999 499888 33 8999999999999999999999999988877
Q ss_pred cccC
Q psy4086 132 QQEQ 135 (305)
Q Consensus 132 ~~~~ 135 (305)
....
T Consensus 78 v~~A 81 (96)
T 2diu_A 78 VSFT 81 (96)
T ss_dssp EESS
T ss_pred EEec
Confidence 4433
No 351
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.54 E-value=2e-14 Score=121.96 Aligned_cols=80 Identities=19% Similarity=0.314 Sum_probs=73.6
Q ss_pred ccCCCCceEEecCCC-CCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEE
Q psy4086 133 QEQDPTNLYIANLPL-NFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLL 211 (305)
Q Consensus 133 ~~~~~~~l~V~nlp~-~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~ 211 (305)
.....++|||+|||. ++++++|+++|++||.|.+|+|+.++ +|||||+|.+.++|++|++.|||..|.| +.|.
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g--~~l~ 103 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHG--KPIR 103 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSS--SBCE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECC--eEEE
Confidence 344568999999999 99999999999999999999999874 7899999999999999999999999999 7799
Q ss_pred EEeccCC
Q psy4086 212 VKFADSG 218 (305)
Q Consensus 212 v~~a~~~ 218 (305)
|.++...
T Consensus 104 v~~a~~~ 110 (229)
T 2adc_A 104 ITLSKHQ 110 (229)
T ss_dssp EECCSCC
T ss_pred EEEecCc
Confidence 9999865
No 352
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.54 E-value=5.7e-15 Score=118.68 Aligned_cols=74 Identities=24% Similarity=0.472 Sum_probs=67.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
..++|||+|||+++++++|+++|++||.|.+++++.++.+|.++|||||+|.+.++|++|++ +++..+.++.++
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~ 159 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIE 159 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEE
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEE
Confidence 34679999999999999999999999999999999999899999999999999999999998 787777666554
No 353
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.53 E-value=2e-14 Score=109.60 Aligned_cols=68 Identities=26% Similarity=0.287 Sum_probs=60.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
...++|||+|| ++|+++|+++|++||+|.+|.|. +++|||||+|.+.++|++|++.|||..|.++.++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~ 104 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLK 104 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 45678999996 69999999999999999999985 4688999999999999999999999888776654
No 354
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=4.2e-14 Score=106.36 Aligned_cols=83 Identities=17% Similarity=0.211 Sum_probs=70.1
Q ss_pred ccCCCCceEEecCCCCCC-----------HHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCC
Q psy4086 133 QEQDPTNLYIANLPLNFK-----------ECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGS 201 (305)
Q Consensus 133 ~~~~~~~l~V~nlp~~~t-----------e~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 201 (305)
.....++|+|.||..... +++|+++|++||.|.+|.| .++ .++|||||+|.+.++|++|++.|||.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 334568899999944332 5899999999999999966 444 47999999999999999999999999
Q ss_pred CCCCCCccEEEEeccCCCc
Q psy4086 202 TLPGSKEPLLVKFADSGLK 220 (305)
Q Consensus 202 ~~~g~~~~l~v~~a~~~~~ 220 (305)
.|.| ++|+|.++..+..
T Consensus 88 ~~~g--r~l~v~~a~~~~~ 104 (112)
T 2dit_A 88 WFGG--RQITAQAWDGTTD 104 (112)
T ss_dssp EETT--EECEEEECCSCCC
T ss_pred EECC--cEEEEEEeCCCCC
Confidence 9999 8899999987544
No 355
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.53 E-value=4.4e-15 Score=110.11 Aligned_cols=72 Identities=11% Similarity=0.270 Sum_probs=63.4
Q ss_pred EecCCCCCCHHHHHHHH------------hhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCcc
Q psy4086 142 IANLPLNFKECDLESLL------------AKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEP 209 (305)
Q Consensus 142 V~nlp~~~te~~l~~~F------------~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~ 209 (305)
+.+|++.+++++|++.| ++||.|++|.|++++++.++|||||+|.+.++|.+|++.|||..+.| ++
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~G--r~ 97 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNG--QP 97 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETT--EE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECC--EE
Confidence 45677777777666655 99999999999998888899999999999999999999999999999 78
Q ss_pred EEEEec
Q psy4086 210 LLVKFA 215 (305)
Q Consensus 210 l~v~~a 215 (305)
|+|.|+
T Consensus 98 i~v~~s 103 (104)
T 1jmt_A 98 IHAELS 103 (104)
T ss_dssp CCEEEC
T ss_pred EEEEEc
Confidence 999986
No 356
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.52 E-value=3.7e-14 Score=105.24 Aligned_cols=81 Identities=22% Similarity=0.309 Sum_probs=70.0
Q ss_pred CCCCceEEecC--CCCCC--------HHHHHHHHhhCCCeEEEEEeeCCC---CCcccEEEEEecCHHHHHHHHHHhCCC
Q psy4086 135 QDPTNLYIANL--PLNFK--------ECDLESLLAKYVTVVSTRILRDNN---NTSKGVGFARLESKDKCDQMIQLFNGS 201 (305)
Q Consensus 135 ~~~~~l~V~nl--p~~~t--------e~~l~~~F~~~g~v~~v~i~~~~~---g~~~g~afV~f~~~~~A~~Ai~~l~g~ 201 (305)
.+++.|.+.|+ +..+. +++|++.|++||.|++|.|++++. +.++|+|||+|.+.++|.+|++.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35677889998 44443 368999999999999999998873 367999999999999999999999999
Q ss_pred CCCCCCccEEEEeccC
Q psy4086 202 TLPGSKEPLLVKFADS 217 (305)
Q Consensus 202 ~~~g~~~~l~v~~a~~ 217 (305)
.+.| |.|+|.|++.
T Consensus 83 ~f~G--R~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFAN--RVVVTKYCDP 96 (105)
T ss_dssp EETT--EECEEEEECH
T ss_pred EeCC--CEEEEEEeCH
Confidence 9999 8899999865
No 357
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.51 E-value=2.3e-14 Score=118.58 Aligned_cols=78 Identities=19% Similarity=0.314 Sum_probs=72.1
Q ss_pred CCCceEEecCCC-CCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q psy4086 136 DPTNLYIANLPL-NFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKF 214 (305)
Q Consensus 136 ~~~~l~V~nlp~-~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~ 214 (305)
..++|||+|||. ++++++|+++|++||.|.+|+++.++ +|||||+|.+.++|++|++.|||..+.| +.|+|.+
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g--~~l~v~~ 75 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHG--KPIRITL 75 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSS--CCCEEEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecC--eEEEEEE
Confidence 357899999999 99999999999999999999999874 7899999999999999999999999999 7799999
Q ss_pred ccCCC
Q psy4086 215 ADSGL 219 (305)
Q Consensus 215 a~~~~ 219 (305)
+....
T Consensus 76 a~~~~ 80 (198)
T 1qm9_A 76 SKHQN 80 (198)
T ss_dssp CCCCS
T ss_pred ecCCC
Confidence 88653
No 358
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.51 E-value=3.8e-14 Score=116.97 Aligned_cols=73 Identities=19% Similarity=0.222 Sum_probs=64.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
..++|||+|||+++|+++|+++|++||.|..|+|+++. +++++|||||+|.+.++|++|++.++ ..+.++.+.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~ 180 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLL 180 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECE
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEE
Confidence 45789999999999999999999999999999999987 59999999999999999999998643 355555443
No 359
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.48 E-value=7.9e-15 Score=118.88 Aligned_cols=85 Identities=16% Similarity=0.298 Sum_probs=72.2
Q ss_pred ccCCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEE
Q psy4086 133 QEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLV 212 (305)
Q Consensus 133 ~~~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v 212 (305)
.....++|||+|||.++++++|+++|+.||.+..+.+....++.++|||||+|.+.++|.+|+ .|||..|.| +.|+|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g--~~l~v 85 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFG--NEIKL 85 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETT--EEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCC--eEEEE
Confidence 345578999999999999999999999999876633333336789999999999999999999 599999999 77999
Q ss_pred EeccCCCc
Q psy4086 213 KFADSGLK 220 (305)
Q Consensus 213 ~~a~~~~~ 220 (305)
.++.....
T Consensus 86 ~~~~~~~~ 93 (175)
T 1fje_B 86 EKPKGRDS 93 (175)
T ss_dssp ECCCCSSC
T ss_pred ecCCCccc
Confidence 99887543
No 360
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.48 E-value=8.1e-14 Score=117.93 Aligned_cols=65 Identities=20% Similarity=0.340 Sum_probs=60.0
Q ss_pred CCCCCeEEEcCCCCCC---------cHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcc
Q psy4086 55 QLSKTNLYIRGLTQDT---------TDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGI 125 (305)
Q Consensus 55 ~~~~~~l~V~~Lp~~~---------t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i 125 (305)
....++|||+||+.++ +|++|+++|++||+|++|+|+. ++|||||+|.+.++|+.|++.|+|+.|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4456889999999998 7999999999999999999985 478999999999999999999999988
No 361
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=2.4e-13 Score=99.64 Aligned_cols=68 Identities=18% Similarity=0.241 Sum_probs=58.8
Q ss_pred CCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEeccCCCcCC
Q psy4086 147 LNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKR 222 (305)
Q Consensus 147 ~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~~~~~~~ 222 (305)
..+++++|+++|++||.|.+|.|+. .++|||||+|.+.++|++|++.+++ +.+ ++|+|+|+..+..+.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~----~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g--~~l~V~~a~~~~~~~ 94 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS----KKPGTAVVEFATVKAAELAVQNEVG--LVD--NPLKISWLEGQPQDA 94 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES----SSSSEEEEEESCHHHHHHHHHTCCB--CSS--SBCEEECSSCCCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc----CCCCEEEEEECCHHHHHHHHHhcCC--CCC--CeEEEEEccCCCCCC
Confidence 4689999999999999999999983 6799999999999999999998554 567 779999998765544
No 362
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.46 E-value=1.2e-13 Score=119.47 Aligned_cols=75 Identities=31% Similarity=0.555 Sum_probs=69.8
Q ss_pred CCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEec
Q psy4086 136 DPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFA 215 (305)
Q Consensus 136 ~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a 215 (305)
..++|||+|||+++|+++|+++|+.||.|.+|.|.+ ++|||||+|.+.++|.+|+..|||..|.| +.|.|.++
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-----~kg~afV~f~~~~~A~~A~~~l~g~~i~g--~~l~v~~a 93 (261)
T 3sde_A 21 QRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR-----DRGFGFIRLESRTLAEIAKAELDGTILKS--RPLRIRFA 93 (261)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETT--EECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCcEEEEEECCHHHHHHHHHHcCCcEECC--ceeEeeec
Confidence 347899999999999999999999999999999974 48999999999999999999999999999 78999998
Q ss_pred cC
Q psy4086 216 DS 217 (305)
Q Consensus 216 ~~ 217 (305)
..
T Consensus 94 ~~ 95 (261)
T 3sde_A 94 TH 95 (261)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 363
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.45 E-value=1.4e-13 Score=122.52 Aligned_cols=80 Identities=23% Similarity=0.286 Sum_probs=68.7
Q ss_pred ccCCCCceEEec--CCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCC---CCC
Q psy4086 133 QEQDPTNLYIAN--LPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLP---GSK 207 (305)
Q Consensus 133 ~~~~~~~l~V~n--lp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~~ 207 (305)
.....++|||+| |++.+||++|+++|++||+|.+|.+.. +||||||+|++.++|++||+.|||+.+. |++
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 355678999999 578999999999999999999987763 5799999999999999999999999873 443
Q ss_pred ccEEEEeccC
Q psy4086 208 EPLLVKFADS 217 (305)
Q Consensus 208 ~~l~v~~a~~ 217 (305)
.+|.|.|+..
T Consensus 89 ~~ly~~~~~~ 98 (345)
T 3tht_A 89 ITLYLNFVEK 98 (345)
T ss_dssp EECEEEECSS
T ss_pred eEEEEEEeec
Confidence 4789999864
No 364
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.45 E-value=1.4e-13 Score=104.06 Aligned_cols=80 Identities=16% Similarity=0.227 Sum_probs=69.6
Q ss_pred CCCceEEecCC--CCC---CHHHHHHHHhhCCCeEEEEEeeCCC-----CCcccEEEEEecCHHHHHHHHHHhCCCCCCC
Q psy4086 136 DPTNLYIANLP--LNF---KECDLESLLAKYVTVVSTRILRDNN-----NTSKGVGFARLESKDKCDQMIQLFNGSTLPG 205 (305)
Q Consensus 136 ~~~~l~V~nlp--~~~---te~~l~~~F~~~g~v~~v~i~~~~~-----g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 205 (305)
.+++|+|.|+- .++ -+++|++.|++||.|.+|.|++++. +.++|++||+|.+.++|.+|++.|||..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 56789999983 223 3689999999999999999999862 4578999999999999999999999999999
Q ss_pred CCccEEEEeccC
Q psy4086 206 SKEPLLVKFADS 217 (305)
Q Consensus 206 ~~~~l~v~~a~~ 217 (305)
|.|+|.|+..
T Consensus 99 --R~i~v~~~~~ 108 (118)
T 3ue2_A 99 --RKVVAEVYDQ 108 (118)
T ss_dssp --EECEEEEECH
T ss_pred --cEEEEEEcCh
Confidence 8899999864
No 365
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=8.2e-13 Score=99.21 Aligned_cols=74 Identities=19% Similarity=0.264 Sum_probs=61.6
Q ss_pred CCCeEEEcCCCCCCc-----------HHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcc
Q psy4086 57 SKTNLYIRGLTQDTT-----------DKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGI 125 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t-----------~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i 125 (305)
..++|+|.||-...+ +++|+++|++||.|.+|.| .++ .++|||||+|.+.++|++|++.|||+.+
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 457799999944332 6899999999999999965 554 3799999999999999999999999998
Q ss_pred cceeccccc
Q psy4086 126 HAQMARQQE 134 (305)
Q Consensus 126 ~~~~~~~~~ 134 (305)
.++.++...
T Consensus 90 ~gr~l~v~~ 98 (112)
T 2dit_A 90 GGRQITAQA 98 (112)
T ss_dssp TTEECEEEE
T ss_pred CCcEEEEEE
Confidence 888766433
No 366
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.41 E-value=4.8e-13 Score=99.19 Aligned_cols=74 Identities=19% Similarity=0.215 Sum_probs=63.8
Q ss_pred CCeEEEcCC--CCCCc--------HHHHHHHHhccCCeeEEEEeeCCCC--CCccceEEEEecchhhHHHHHHHhccCcc
Q psy4086 58 KTNLYIRGL--TQDTT--------DKDLINMCSQYGPIISTKAILDKTT--NKCRGYGFVDFESGGYALAAVKALQDKGI 125 (305)
Q Consensus 58 ~~~l~V~~L--p~~~t--------~~~L~~~f~~~G~i~~~~i~~~~~~--g~~~G~afV~f~~~~~A~~a~~~l~g~~i 125 (305)
++.|.|.|+ +.++. +++|++.|++||.|.+|+|++++.+ ++++|++||+|.+.++|.+|++.|||+.+
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f 84 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKF 84 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEe
Confidence 467999998 43443 3689999999999999999998754 46899999999999999999999999999
Q ss_pred cceecc
Q psy4086 126 HAQMAR 131 (305)
Q Consensus 126 ~~~~~~ 131 (305)
.++.++
T Consensus 85 ~GR~i~ 90 (105)
T 3v4m_A 85 ANRVVV 90 (105)
T ss_dssp TTEECE
T ss_pred CCCEEE
Confidence 988765
No 367
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.41 E-value=9.4e-14 Score=102.88 Aligned_cols=68 Identities=19% Similarity=0.251 Sum_probs=59.8
Q ss_pred EcCCCCCCcHHHHHHHH------------hccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceec
Q psy4086 63 IRGLTQDTTDKDLINMC------------SQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMA 130 (305)
Q Consensus 63 V~~Lp~~~t~~~L~~~f------------~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~ 130 (305)
+.+|+.++++++|++.| ++||+|.+|+|+++.. ++++|||||+|.+.++|++|++.|||+.+.++.+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56777888888777666 9999999999999874 7899999999999999999999999999998876
Q ss_pred c
Q psy4086 131 R 131 (305)
Q Consensus 131 ~ 131 (305)
+
T Consensus 99 ~ 99 (104)
T 1jmt_A 99 H 99 (104)
T ss_dssp C
T ss_pred E
Confidence 4
No 368
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.37 E-value=1.1e-12 Score=99.09 Aligned_cols=74 Identities=16% Similarity=0.281 Sum_probs=64.1
Q ss_pred CCeEEEcCCC--CCC---cHHHHHHHHhccCCeeEEEEeeCCC----CCCccceEEEEecchhhHHHHHHHhccCcccce
Q psy4086 58 KTNLYIRGLT--QDT---TDKDLINMCSQYGPIISTKAILDKT----TNKCRGYGFVDFESGGYALAAVKALQDKGIHAQ 128 (305)
Q Consensus 58 ~~~l~V~~Lp--~~~---t~~~L~~~f~~~G~i~~~~i~~~~~----~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~ 128 (305)
+++|+|.|+- .++ -++||++.|++||+|.+|+|++++. +++++|++||+|.+.++|.+|++.|||+.+.++
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR 99 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 99 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 4679999983 222 3689999999999999999999864 467889999999999999999999999999988
Q ss_pred ecc
Q psy4086 129 MAR 131 (305)
Q Consensus 129 ~~~ 131 (305)
.++
T Consensus 100 ~i~ 102 (118)
T 3ue2_A 100 KVV 102 (118)
T ss_dssp ECE
T ss_pred EEE
Confidence 765
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.37 E-value=5.9e-13 Score=118.52 Aligned_cols=62 Identities=15% Similarity=0.227 Sum_probs=56.3
Q ss_pred CCeEEEcC--CCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcc
Q psy4086 58 KTNLYIRG--LTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGI 125 (305)
Q Consensus 58 ~~~l~V~~--Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i 125 (305)
..+|||+| |++.+||++|+++|++||+|++|.+.. +||||||+|.+.++|++|++.|||+.+
T Consensus 18 s~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~ 81 (345)
T 3tht_A 18 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEV 81 (345)
T ss_dssp CSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCcc
Confidence 46799999 588999999999999999999887753 478999999999999999999999987
No 370
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.32 E-value=2e-12 Score=97.05 Aligned_cols=77 Identities=10% Similarity=0.109 Sum_probs=64.9
Q ss_pred CCCceEEecCCC--CC--------CHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCC
Q psy4086 136 DPTNLYIANLPL--NF--------KECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPG 205 (305)
Q Consensus 136 ~~~~l~V~nlp~--~~--------te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 205 (305)
.++.|.+.|+=. .. -+++|++.|++||.|++|.|.++ ..+|++||+|.+.++|.+|++.|||..+.|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~---~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN---SAQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTT---CTTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecC---CCcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 456678888732 21 13589999999999999999766 368999999999999999999999999999
Q ss_pred CCccEEEEeccC
Q psy4086 206 SKEPLLVKFADS 217 (305)
Q Consensus 206 ~~~~l~v~~a~~ 217 (305)
+.|+|.|+..
T Consensus 83 --R~i~v~~~~~ 92 (114)
T 3s6e_A 83 --KMITAAYVPL 92 (114)
T ss_dssp --EECEEEEECH
T ss_pred --EEEEEEEEcH
Confidence 7899999864
No 371
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=3.5e-11 Score=88.04 Aligned_cols=59 Identities=19% Similarity=0.235 Sum_probs=49.8
Q ss_pred CCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhc---cCcccceecc
Q psy4086 68 QDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQ---DKGIHAQMAR 131 (305)
Q Consensus 68 ~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~---g~~i~~~~~~ 131 (305)
.++++++|+++|++||+|.+|.|+ ++++|||||+|.+.++|++|++.++ ++.|.+.+++
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V~~a~ 88 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVGLVDNPLKISWLE 88 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCBCSSSBCEEECSS
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCCCCCCeEEEEEcc
Confidence 468999999999999999999998 4689999999999999999999855 3455555544
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.16 E-value=1.2e-10 Score=87.24 Aligned_cols=70 Identities=21% Similarity=0.302 Sum_probs=57.7
Q ss_pred CCeEEEcCCCCCC----------cHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccc
Q psy4086 58 KTNLYIRGLTQDT----------TDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHA 127 (305)
Q Consensus 58 ~~~l~V~~Lp~~~----------t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~ 127 (305)
++.|.|.|+=..- -++||++.|++||.|.+|.|.++. .+|++||+|.+.++|++|++.|||+.+.+
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 4568888873221 245789999999999999987653 58999999999999999999999999998
Q ss_pred eecc
Q psy4086 128 QMAR 131 (305)
Q Consensus 128 ~~~~ 131 (305)
+.++
T Consensus 83 R~i~ 86 (114)
T 3s6e_A 83 KMIT 86 (114)
T ss_dssp EECE
T ss_pred EEEE
Confidence 8764
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.11 E-value=2.2e-10 Score=80.85 Aligned_cols=74 Identities=14% Similarity=0.243 Sum_probs=61.9
Q ss_pred CCCCceEEecCCC----CCCH----HHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCC
Q psy4086 135 QDPTNLYIANLPL----NFKE----CDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGS 206 (305)
Q Consensus 135 ~~~~~l~V~nlp~----~~te----~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 206 (305)
....||+|...+. +.-. .+|.+.|++||.|..++++.++ +||+|.+.++|.+||+ |||..+.|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~-------~fVtF~d~~sAlaAi~-mnG~~v~G- 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK-------MWVTFLEGSSALNVLS-LNGKELLN- 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS-------EEEEESSHHHHHHGGG-GTTCEETT-
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC-------EEEEECChHHHHHHHh-cCCeEeCC-
Confidence 3456788877662 3333 5799999999999999999873 8999999999999998 99999999
Q ss_pred CccEEEEeccCC
Q psy4086 207 KEPLLVKFADSG 218 (305)
Q Consensus 207 ~~~l~v~~a~~~ 218 (305)
|.|+|+++.+.
T Consensus 76 -r~LkV~lkt~d 86 (91)
T 2dnr_A 76 -RTITIALKSPS 86 (91)
T ss_dssp -EEEEEEECCCS
T ss_pred -eEEEEEeCCCC
Confidence 77999998764
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=1.7e-10 Score=86.79 Aligned_cols=60 Identities=23% Similarity=0.177 Sum_probs=55.4
Q ss_pred CCCCeEEEcCCCCC-CcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecc-hhhHHHHHHHhc
Q psy4086 56 LSKTNLYIRGLTQD-TTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFES-GGYALAAVKALQ 121 (305)
Q Consensus 56 ~~~~~l~V~~Lp~~-~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~-~~~A~~a~~~l~ 121 (305)
...+.|||+||+.+ +++++|+++|++||+|..|.++++.. .|||+|.+ .++|..|++.||
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln 77 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDAN 77 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTT
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhh
Confidence 45688999999999 99999999999999999999998875 59999999 899999999985
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=4.9e-10 Score=84.27 Aligned_cols=76 Identities=11% Similarity=-0.008 Sum_probs=65.2
Q ss_pred CCCCceEEecCCCC-CCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecC-HHHHHHHHHHhC--CCCCCCCCccE
Q psy4086 135 QDPTNLYIANLPLN-FKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLES-KDKCDQMIQLFN--GSTLPGSKEPL 210 (305)
Q Consensus 135 ~~~~~l~V~nlp~~-~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~-~~~A~~Ai~~l~--g~~~~g~~~~l 210 (305)
...+.|||+||++. +++++|+++|+.||.|..|.+..+. ..|||+|.+ .++|..|++.|| +..|.+ ..+
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~-----~tgfVrf~~~~~~A~~av~~ln~~~~~i~g--~~~ 88 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA-----KEGIILFKEKAKEALGKAKDANNGNLQLRN--KEV 88 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC-----SEEEEEESSCHHHHHHHHHHTTTSCBCTTS--SSE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-----CEEEEEECCChHHHHHHHHHhhcCCcEEeC--cEE
Confidence 45678999999999 9999999999999999999999774 269999999 899999999995 667888 557
Q ss_pred EEEeccC
Q psy4086 211 LVKFADS 217 (305)
Q Consensus 211 ~v~~a~~ 217 (305)
+++....
T Consensus 89 ~~evL~G 95 (121)
T 1owx_A 89 TWEVLEG 95 (121)
T ss_dssp EEEECCH
T ss_pred EEEECCC
Confidence 7776543
No 376
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.96 E-value=1.4e-09 Score=91.45 Aligned_cols=67 Identities=16% Similarity=0.190 Sum_probs=60.4
Q ss_pred CCHHHHHHHHhhCCCeEEEEEeeCC-----CCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEeccC
Q psy4086 149 FKECDLESLLAKYVTVVSTRILRDN-----NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADS 217 (305)
Q Consensus 149 ~te~~l~~~F~~~g~v~~v~i~~~~-----~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~~ 217 (305)
-.+++|++.|++||.|.++.|+++. ++.++|++||+|.+.++|.+|++.|||..+.| |+|++.|...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~g--r~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG--RKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSS--SBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECC--eEEEEEEcCH
Confidence 3568999999999999999998664 34889999999999999999999999999999 7799999864
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.93 E-value=9.3e-10 Score=78.05 Aligned_cols=74 Identities=14% Similarity=0.149 Sum_probs=62.0
Q ss_pred cCCCCceEEecCCCC-----CCH----HHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCC
Q psy4086 134 EQDPTNLYIANLPLN-----FKE----CDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLP 204 (305)
Q Consensus 134 ~~~~~~l~V~nlp~~-----~te----~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 204 (305)
..+..||+|..++.+ +-. .+|.+.|++||+|..+++..++ +||+|.+.++|.+||+ |||..+.
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 445678999887643 222 4689999999999999999873 9999999999999998 9999999
Q ss_pred CCCccEEEEeccC
Q psy4086 205 GSKEPLLVKFADS 217 (305)
Q Consensus 205 g~~~~l~v~~a~~ 217 (305)
| |.|+|++..+
T Consensus 84 G--r~L~V~~k~~ 94 (95)
T 1ufw_A 84 G--RAVKISGPSS 94 (95)
T ss_dssp T--EEEEEECCCC
T ss_pred C--eEEEEeccCC
Confidence 9 7799998543
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.79 E-value=9.9e-09 Score=86.20 Aligned_cols=62 Identities=15% Similarity=0.236 Sum_probs=55.1
Q ss_pred CcHHHHHHHHhccCCeeEEEEeeCCC----CCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 70 TTDKDLINMCSQYGPIISTKAILDKT----TNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 70 ~t~~~L~~~f~~~G~i~~~~i~~~~~----~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
-.+++|++.|++||.|.++.|+++.. +++++|++||+|.+.++|.+|++.|||+.+.++.+.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~ 206 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVV 206 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEE
Confidence 35688999999999999999996543 458999999999999999999999999999888764
No 379
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.77 E-value=1e-08 Score=72.37 Aligned_cols=69 Identities=19% Similarity=0.301 Sum_probs=56.6
Q ss_pred CeEEEcCCCC----CCcH----HHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceec
Q psy4086 59 TNLYIRGLTQ----DTTD----KDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMA 130 (305)
Q Consensus 59 ~~l~V~~Lp~----~~t~----~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~ 130 (305)
.||+|.-.+. +.-. .+|.+.|.+||+|..++++.++ +||+|.+.++|.+|++ |||..+.++.+
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr~L 78 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNRTI 78 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTEEE
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCeEE
Confidence 5688887662 2333 5789999999999999999875 8999999999999999 99999999887
Q ss_pred ccccCC
Q psy4086 131 RQQEQD 136 (305)
Q Consensus 131 ~~~~~~ 136 (305)
+.....
T Consensus 79 kV~lkt 84 (91)
T 2dnr_A 79 TIALKS 84 (91)
T ss_dssp EEEECC
T ss_pred EEEeCC
Confidence 754443
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.69 E-value=1.5e-08 Score=71.84 Aligned_cols=67 Identities=12% Similarity=0.251 Sum_probs=56.4
Q ss_pred CeEEEcCCCCC------CcH---HHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCccccee
Q psy4086 59 TNLYIRGLTQD------TTD---KDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQM 129 (305)
Q Consensus 59 ~~l~V~~Lp~~------~t~---~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~ 129 (305)
.||+|.-++.. ..+ .+|.+.|+.||+|..++++.|+ +||+|.+.++|.+||+ |||..|.++.
T Consensus 16 ~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~Gr~ 86 (95)
T 1ufw_A 16 ATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVKGRA 86 (95)
T ss_dssp CEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEETTEE
T ss_pred CeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeCCeE
Confidence 56999988642 232 5688999999999999999875 9999999999999999 9999999998
Q ss_pred ccccc
Q psy4086 130 ARQQE 134 (305)
Q Consensus 130 ~~~~~ 134 (305)
++...
T Consensus 87 L~V~~ 91 (95)
T 1ufw_A 87 VKISG 91 (95)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 76443
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.49 E-value=5.3e-07 Score=65.22 Aligned_cols=74 Identities=12% Similarity=0.130 Sum_probs=66.3
Q ss_pred cCCCCceEEecCCCCCCHHHHHHHHhhC-----CCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCc
Q psy4086 134 EQDPTNLYIANLPLNFKECDLESLLAKY-----VTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKE 208 (305)
Q Consensus 134 ~~~~~~l~V~nlp~~~te~~l~~~F~~~-----g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 208 (305)
....++|-+-|||..+++..|+.+.+++ |.|+.+.+..| .+-|+|+|.|...|-+|..+|+|.+|.| +
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-----H~GAivef~d~~~AgKasLaL~G~ef~g--r 90 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-----FNGAIIIFRDSKFAAKMLMILNGSQFQG--K 90 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-----TTEEEEECSCHHHHHHHHHHHSSEEETT--E
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-----CCceEEEEccchhhHHHHhhcCCeeecC--e
Confidence 3447889999999999999999999999 99999999877 4569999999999999999999999998 7
Q ss_pred cEEEEe
Q psy4086 209 PLLVKF 214 (305)
Q Consensus 209 ~l~v~~ 214 (305)
.|++.-
T Consensus 91 ~Lr~gT 96 (117)
T 2l9w_A 91 VIRSGT 96 (117)
T ss_dssp EEEEEC
T ss_pred EEEecC
Confidence 788764
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.24 E-value=4.8e-06 Score=60.21 Aligned_cols=69 Identities=12% Similarity=0.126 Sum_probs=62.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcc-----CCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQY-----GPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~-----G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
+.++|-+-+||-.+++..|+.+++.+ |.|+++.+..|.. =|+|+|.|...|.+|.=.|||..|.++.++
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 34679999999999999999999999 9999999998874 599999999999999988999999976544
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.12 E-value=1.7e-05 Score=56.89 Aligned_cols=83 Identities=19% Similarity=0.277 Sum_probs=67.5
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcc-----CCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHH----hccCcccce
Q psy4086 58 KTNLYIRGLTQDTTDKDLINMCSQY-----GPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA----LQDKGIHAQ 128 (305)
Q Consensus 58 ~~~l~V~~Lp~~~t~~~L~~~f~~~-----G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~----l~g~~i~~~ 128 (305)
..+|.|.|||+++.++.|.-+|+.- |+|..+.... +-|+|+|.+.+.|++.++. |++..|.+.
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLSLR 79 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEEEE
Confidence 3669999999999999999999872 4788887654 2699999999999999986 777777665
Q ss_pred ecccccCCCCceEEecCCCCCC
Q psy4086 129 MARQQEQDPTNLYIANLPLNFK 150 (305)
Q Consensus 129 ~~~~~~~~~~~l~V~nlp~~~t 150 (305)
. .....+.+|++.+|++.++
T Consensus 80 P--~~~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 80 P--APPRAPARLLLQGLPPGTS 99 (104)
T ss_dssp E--CCCCCCCCCCCCSCCCCCC
T ss_pred c--CCCCCcceEeeecCCCCCC
Confidence 5 3455678899999998775
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.83 E-value=4.1e-05 Score=55.12 Aligned_cols=76 Identities=11% Similarity=0.087 Sum_probs=63.3
Q ss_pred CCCceEEecCCCCC-C----HHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccE
Q psy4086 136 DPTNLYIANLPLNF-K----ECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPL 210 (305)
Q Consensus 136 ~~~~l~V~nlp~~~-t----e~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l 210 (305)
-+++|+|.||+.++ . .+.++++|..|+.+......+. -.-..|.|.+.++|.+|...||+..+.| +.|
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-----FRRirv~F~~~~~A~~AR~~Lh~~~f~g--~~~ 76 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-----FKRVRINFSNPLSAADARLRLHKTEFLG--KEM 76 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-----TTEEEEECSSTTHHHHHHHTSTTSEETT--EEC
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-----ceEEEEEeCChHHHHHHHHHhccceecC--cee
Confidence 46889999998865 2 2578999999999888777743 3347999999999999999999999999 669
Q ss_pred EEEeccCC
Q psy4086 211 LVKFADSG 218 (305)
Q Consensus 211 ~v~~a~~~ 218 (305)
+|=|+...
T Consensus 77 r~YFgq~~ 84 (104)
T 1wey_A 77 KLYFAQTL 84 (104)
T ss_dssp EEECCCCS
T ss_pred EEEecCCC
Confidence 99998843
No 385
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.82 E-value=9.6e-05 Score=52.28 Aligned_cols=69 Identities=10% Similarity=0.050 Sum_probs=57.0
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCC--ccceEEEEecchhhHHHHHHHhccCcccc
Q psy4086 59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNK--CRGYGFVDFESGGYALAAVKALQDKGIHA 127 (305)
Q Consensus 59 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~--~~G~afV~f~~~~~A~~a~~~l~g~~i~~ 127 (305)
++|.|++||+.+||+++.+.+..+.++.....+..+.+.. .-.-|+|.|.+.+++....+.++|+.+..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 5699999999999999999999988887777766654322 22459999999999999999999987654
No 386
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.80 E-value=0.00015 Score=51.33 Aligned_cols=54 Identities=22% Similarity=0.265 Sum_probs=45.5
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhc
Q psy4086 59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQ 121 (305)
Q Consensus 59 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~ 121 (305)
+.++| ++|++....||.++|+.||.|. |+.+-|- .|||.|.+++.|..|+..+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 43555 9999999999999999999654 6666664 79999999999999999774
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.69 E-value=0.00024 Score=50.19 Aligned_cols=80 Identities=14% Similarity=0.219 Sum_probs=62.1
Q ss_pred CceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-CC--CcccEEEEEecCHHHHHHHHHHhCCCCCCCC---CccEE
Q psy4086 138 TNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NN--TSKGVGFARLESKDKCDQMIQLFNGSTLPGS---KEPLL 211 (305)
Q Consensus 138 ~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~g--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~---~~~l~ 211 (305)
++|.|++||+.+||+++.+.+.....+........+ +. ..-.-|+|.|.+.+++..-.+.++|+.+.+. ..+..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 578999999999999999999998887777666655 21 1234599999999999999999999977443 23455
Q ss_pred EEeccC
Q psy4086 212 VKFADS 217 (305)
Q Consensus 212 v~~a~~ 217 (305)
|++|--
T Consensus 82 VE~AP~ 87 (91)
T 1uw4_A 82 VEFAPF 87 (91)
T ss_dssp EEECSS
T ss_pred EEEcCC
Confidence 777653
No 388
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.53 E-value=0.00099 Score=47.72 Aligned_cols=75 Identities=15% Similarity=0.124 Sum_probs=59.8
Q ss_pred CCceEEecCCCCCCHHHHHHHHhh-----CCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEE
Q psy4086 137 PTNLYIANLPLNFKECDLESLLAK-----YVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLL 211 (305)
Q Consensus 137 ~~~l~V~nlp~~~te~~l~~~F~~-----~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~ 211 (305)
.++|.|.|||..+.++.|+-+|+. -|.|..++... +-|+|+|.+.+.|++.++. ..+.|.+ .+|.
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF~d~~va~rVL~k-~~H~L~~--~~Ls 77 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------CGGVLTFREPADAERVLAQ-ADHELHG--AQLS 77 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------TEEEEEESSHHHHHHHHTC-SCCBSSS--SBCE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------CcEEEEEcChHHHHHHhcC-CcceecC--eEEE
Confidence 578999999999999999999987 26688887753 4799999999999999863 3578888 6688
Q ss_pred EEeccCCCcC
Q psy4086 212 VKFADSGLKK 221 (305)
Q Consensus 212 v~~a~~~~~~ 221 (305)
|.-.......
T Consensus 78 V~P~~~~~~~ 87 (104)
T 2dhx_A 78 LRPAPPRAPA 87 (104)
T ss_dssp EEECCCCCCC
T ss_pred EEcCCCCCcc
Confidence 8775554443
No 389
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.25 E-value=0.001 Score=47.08 Aligned_cols=54 Identities=17% Similarity=0.340 Sum_probs=45.0
Q ss_pred CceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhC
Q psy4086 138 TNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFN 199 (305)
Q Consensus 138 ~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 199 (305)
..++| .+|.++...||.++|+.||. ..|+++.|. -|||.|.+++.|..|+..+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidDT------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEETT------EEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcCC------eEEEEecCHHHHHHHHHhcc
Confidence 34555 99999999999999999994 456666663 69999999999999998764
No 390
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.24 E-value=0.00087 Score=49.56 Aligned_cols=66 Identities=17% Similarity=0.204 Sum_probs=51.8
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccc
Q psy4086 54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHA 127 (305)
Q Consensus 54 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~ 127 (305)
+..+.+.|.|-+.|+.. .+.|...|++||+|.+...... .-+-.|.|.+..+|++||. .||..|..
T Consensus 20 ~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL~-kNG~ii~g 85 (119)
T 1wwh_A 20 DHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKALS-KDGRIFGE 85 (119)
T ss_dssp -CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHHT-TTTCEETT
T ss_pred CCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHHH-hCCeEecC
Confidence 34567889999999885 5666677999999998886211 2389999999999999999 58877654
No 391
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.20 E-value=0.00077 Score=48.48 Aligned_cols=67 Identities=10% Similarity=0.051 Sum_probs=55.5
Q ss_pred CeEEEcCCCCCC-cH----HHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecc
Q psy4086 59 TNLYIRGLTQDT-TD----KDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131 (305)
Q Consensus 59 ~~l~V~~Lp~~~-t~----~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~ 131 (305)
++|+|.||+.++ +. +.++++|..|+++......+.-. -..|.|.+.++|.+|-..||+..+.++.++
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 569999999876 32 56788999999988887776532 478999999999999999999999888654
No 392
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.10 E-value=0.0021 Score=47.54 Aligned_cols=72 Identities=15% Similarity=0.089 Sum_probs=57.0
Q ss_pred CCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEecc
Q psy4086 137 PTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFAD 216 (305)
Q Consensus 137 ~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~ 216 (305)
.+.|.|-+.|... .+.+.+.|++||+|++.... ....+-.|+|.+..+|++||. .||..|.+. ..|-|....
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~-----~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~-~mIGV~p~~ 95 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS-----NTGNWMHIRYQSKLQARKALS-KDGRIFGES-IMIGVKPCI 95 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC-----SSSSEEEEEESSHHHHHHHHT-TTTCEETTT-EECEEEECC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC-----CCCCeEEEEeCCHHHHHHHHH-hCCeEecCC-EEEEEEECC
Confidence 4668888888875 56777899999999988762 235699999999999999997 599998753 456677754
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.10 E-value=0.0012 Score=46.91 Aligned_cols=54 Identities=20% Similarity=0.253 Sum_probs=45.1
Q ss_pred eEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhc
Q psy4086 60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQ 121 (305)
Q Consensus 60 ~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~ 121 (305)
.||+-++|++....||.++|+.||.| .|+.+-|- .|||.|.+++.|..|+..+.
T Consensus 7 HV~~l~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEEeCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 34544999999999999999999943 46666654 79999999999999999764
No 394
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.90 E-value=0.0011 Score=47.05 Aligned_cols=80 Identities=16% Similarity=0.191 Sum_probs=56.5
Q ss_pred CCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCC-C-C-CcccEEEEEecCHHHHHHHHHHhCCCCCCC---CCccE
Q psy4086 137 PTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-N-N-TSKGVGFARLESKDKCDQMIQLFNGSTLPG---SKEPL 210 (305)
Q Consensus 137 ~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~-~-g-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g---~~~~l 210 (305)
.-+|.|+.||+.+||+++.+.+...-.+........+ + + ..-.-|+|.|.+.++...-.+.++|+.+.+ ..-+-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 4579999999999999998888776554333322222 1 1 112348999999999999999999987743 23456
Q ss_pred EEEecc
Q psy4086 211 LVKFAD 216 (305)
Q Consensus 211 ~v~~a~ 216 (305)
.|+||-
T Consensus 89 ~VE~AP 94 (97)
T 2l08_A 89 VVEFAP 94 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 677764
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.89 E-value=0.0014 Score=46.45 Aligned_cols=53 Identities=17% Similarity=0.329 Sum_probs=44.8
Q ss_pred ceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhC
Q psy4086 139 NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFN 199 (305)
Q Consensus 139 ~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 199 (305)
.++| ++|.++...||.++|+.|| -..|+++.|. -|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT------EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC------eEEEEecCHHHHHHHHHhcc
Confidence 3555 9999999999999999999 4566777663 69999999999999998775
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.88 E-value=0.00082 Score=47.79 Aligned_cols=70 Identities=10% Similarity=-0.003 Sum_probs=49.7
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCC--ccceEEEEecchhhHHHHHHHhccCcccce
Q psy4086 59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNK--CRGYGFVDFESGGYALAAVKALQDKGIHAQ 128 (305)
Q Consensus 59 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~--~~G~afV~f~~~~~A~~a~~~l~g~~i~~~ 128 (305)
-+|.|+.||+.+||+++.+.+..+-++.....+..+.+-. .-.-|+|.|.+.++.....+.++|+.+...
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 4599999999999999888877654443322222221111 223589999999999999999998866543
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.59 E-value=0.0012 Score=60.80 Aligned_cols=56 Identities=16% Similarity=0.218 Sum_probs=42.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHH
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVK 118 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~ 118 (305)
..+.|||. .+..+++++|.++|++||+|.++.+.+++. -||.|+|.+.+++..++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-----~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-----LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-----EEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-----eEEEEEeCCHHHHHHHHh
Confidence 45779998 799999999999999999999998876653 499999999999987754
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.92 E-value=0.014 Score=53.64 Aligned_cols=57 Identities=11% Similarity=0.121 Sum_probs=42.2
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH
Q psy4086 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQ 196 (305)
Q Consensus 135 ~~~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~ 196 (305)
...++|+|. .+..+++.+|.+.|++||.|.++.+-.++ .-||.|+|.+.+++..++.
T Consensus 51 qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 51 QAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS----SEEEEEECC---CCHHHHS
T ss_pred HhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC----CeEEEEEeCCHHHHHHHHh
Confidence 345789997 79999999999999999999998877542 3599999999999887754
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.86 E-value=0.023 Score=42.57 Aligned_cols=69 Identities=9% Similarity=0.236 Sum_probs=45.9
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhccCCeeE-EEEeeCC--------CCC-----CccceEEEEecchhhHHHHHHHhccC
Q psy4086 58 KTNLYIRGLTQDTTDKDLINMCSQYGPIIS-TKAILDK--------TTN-----KCRGYGFVDFESGGYALAAVKALQDK 123 (305)
Q Consensus 58 ~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~-~~i~~~~--------~~g-----~~~G~afV~f~~~~~A~~a~~~l~g~ 123 (305)
.+.|.|-+.|++.+.. +.+.|++||.|.+ ..+.+.. ... .....-.|+|.+..+|++|+. .||+
T Consensus 7 e~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 3568888998766555 4557999999866 2211100 000 124577999999999999999 6777
Q ss_pred cccce
Q psy4086 124 GIHAQ 128 (305)
Q Consensus 124 ~i~~~ 128 (305)
.|.+.
T Consensus 85 ii~G~ 89 (132)
T 3p3d_A 85 VFNGV 89 (132)
T ss_dssp EETTE
T ss_pred EeCcE
Confidence 76654
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.54 E-value=0.032 Score=41.77 Aligned_cols=77 Identities=12% Similarity=0.120 Sum_probs=53.6
Q ss_pred CCceEEecCCCCCCHHHHHHHHhhCCCeEE-EEEee------------CC-CC-CcccEEEEEecCHHHHHHHHHHhCCC
Q psy4086 137 PTNLYIANLPLNFKECDLESLLAKYVTVVS-TRILR------------DN-NN-TSKGVGFARLESKDKCDQMIQLFNGS 201 (305)
Q Consensus 137 ~~~l~V~nlp~~~te~~l~~~F~~~g~v~~-v~i~~------------~~-~g-~~~g~afV~f~~~~~A~~Ai~~l~g~ 201 (305)
...|.|-+.|.+.+ ..+.+.|++||.|.+ +.+.. .+ -. ....+..|+|.+..+|.+||. .||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 34566777776654 556679999999876 22111 00 00 135688999999999999997 6999
Q ss_pred CCCCCCccEEEEeccC
Q psy4086 202 TLPGSKEPLLVKFADS 217 (305)
Q Consensus 202 ~~~g~~~~l~v~~a~~ 217 (305)
.|.| ..|-|...++
T Consensus 85 ii~G--~mIGV~Py~~ 98 (132)
T 3p3d_A 85 VFNG--VLLGVIPYTK 98 (132)
T ss_dssp EETT--EECEEEECCH
T ss_pred EeCc--EEEEEEECCH
Confidence 9999 4677877654
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=91.75 E-value=0.55 Score=43.78 Aligned_cols=55 Identities=22% Similarity=0.282 Sum_probs=45.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhc
Q psy4086 58 KTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQ 121 (305)
Q Consensus 58 ~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~ 121 (305)
...++|+ +|..+...+|.++|+.||.+ +|+.+.+. .|||.|.+.+.|..+++.++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 3456666 88899999999999999964 46655443 79999999999999999885
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=86.88 E-value=1.5 Score=40.86 Aligned_cols=53 Identities=17% Similarity=0.339 Sum_probs=43.0
Q ss_pred ceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhC
Q psy4086 139 NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFN 199 (305)
Q Consensus 139 ~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 199 (305)
.++|+ ++..+...+|.++|+.||. .+|+++.+ ..|||.|.+.+.|..++..++
T Consensus 442 vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 442 VLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp EEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS------SEEEEECSCHHHHHHHHHHHT
T ss_pred EEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC------CeEEEEECCHHHHHHHHHHHH
Confidence 35555 8889999999999999994 45555543 369999999999999999885
No 403
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=61.71 E-value=29 Score=23.81 Aligned_cols=52 Identities=21% Similarity=0.269 Sum_probs=35.2
Q ss_pred eeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecccccCCCCceEEecCCCCCCHHHHHHHHh
Q psy4086 85 IISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDLESLLA 159 (305)
Q Consensus 85 i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~~~~~~~~l~V~nlp~~~te~~l~~~F~ 159 (305)
|.++.+.. .-+||-||++...++...+++.+.|. +=||++ .++++++..++.
T Consensus 40 i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t~gV---------------~gfvg~---pl~~~Ev~~il~ 91 (92)
T 3lpe_A 40 VYSILASE-----SLKGYVLVEAETKGDVEELIKGMPRV---------------RGIVPG---TIAIEEIEPLLT 91 (92)
T ss_dssp EEEEEECT-----TSTTEEEEEESSHHHHHHHHTTCTTE---------------EEECSS---CCCHHHHHHHHC
T ss_pred EEEEEEec-----ccCCEEEEEEecchhHHHHHHCCCCc---------------eEeCCC---CCCHHHHHHHhC
Confidence 55555543 37899999999998887777644321 234544 678888887764
No 404
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=53.72 E-value=42 Score=21.70 Aligned_cols=59 Identities=17% Similarity=0.326 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHhhCCC-----eEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCCCCCCccEEEEecc
Q psy4086 148 NFKECDLESLLAKYVT-----VVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFAD 216 (305)
Q Consensus 148 ~~te~~l~~~F~~~g~-----v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~v~~a~ 216 (305)
.+...+|..++..-+. |-.+.|..+ |.||+-.. +.|.++++.|++..+.| +.+.|+.++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~-------~s~v~v~~-~~~~~~~~~l~~~~i~g--~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN-------ASYVEILN-GKGPHVLKVMKNTTVKG--KQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS-------CEEEEECT-TCHHHHHHHHTTCCC-----CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC-------cEEEEECH-HHHHHHHHHhccccCcC--ceEEEEECC
Confidence 4566777777765544 445666533 78898765 45778889999999999 568887654
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=42.23 E-value=80 Score=21.55 Aligned_cols=58 Identities=14% Similarity=0.142 Sum_probs=46.0
Q ss_pred CCceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCC
Q psy4086 137 PTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGS 201 (305)
Q Consensus 137 ~~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 201 (305)
.+-|-|-|+|..+-..++--.....|---.|..+ .|.|.|+|.+.++-.-||..|-+.
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyi-------dgqamirfqnsdeqrlaiqkllnh 69 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-------DGQAMIRFQNSDEQRLAIQKLLNH 69 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-------SSCEEEEESSHHHHHHHHHHHEET
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-------cCeeEEEecCChHHHHHHHHHHhc
Confidence 4567788999998888877777777777777766 457999999999999999877433
No 406
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=33.28 E-value=87 Score=24.30 Aligned_cols=49 Identities=10% Similarity=0.192 Sum_probs=35.0
Q ss_pred EEEcCCCCC---------CcHHHHHHHH--hccCCeeEEEEeeCCCCCCccceEEEEecchhh
Q psy4086 61 LYIRGLTQD---------TTDKDLINMC--SQYGPIISTKAILDKTTNKCRGYGFVDFESGGY 112 (305)
Q Consensus 61 l~V~~Lp~~---------~t~~~L~~~f--~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~ 112 (305)
+.|-|++.. ....+|++.| ..|.+++ ++.+.++. -++|++.|+|.+...
T Consensus 15 gIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~--Gh~g~aIv~F~~dw~ 74 (172)
T 4e8u_A 15 GIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYL--GHSGTAIVEFNKDWN 74 (172)
T ss_dssp EEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSS--BEEEEEEEECCSSHH
T ss_pred EEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCC--CCceeEEEEecCChH
Confidence 456666651 3457899977 8998865 77777663 478999999988543
No 407
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=30.74 E-value=1.1e+02 Score=20.10 Aligned_cols=56 Identities=11% Similarity=0.108 Sum_probs=34.1
Q ss_pred eEEEEecchhhHHHHHHH---hccCcccceecccccCCC---CceEEecCCCCCCHHHHHHHHhhC
Q psy4086 102 YGFVDFESGGYALAAVKA---LQDKGIHAQMARQQEQDP---TNLYIANLPLNFKECDLESLLAKY 161 (305)
Q Consensus 102 ~afV~f~~~~~A~~a~~~---l~g~~i~~~~~~~~~~~~---~~l~V~nlp~~~te~~l~~~F~~~ 161 (305)
|.++.|....++.+-++. +|...+.--.+ +.... ..+|| |.++++++++....++|
T Consensus 7 Yvl~~~~a~~~~i~Eler~~rine~VlR~l~v--r~d~~r~YE~m~I--l~P~l~ee~~~~~vek~ 68 (77)
T 3zzp_A 7 TTWYQVEMPEDRVNDLARELRIRDNVRRVMVV--ASTTPGRYEVNIV--LNPNLDQSQLQNEKEII 68 (77)
T ss_dssp EEEEEEECCHHHHHHHHHHHHTSTTEEEEEEE--ECSSTTEEEEEEE--ECTTCCHHHHHHHHHHH
T ss_pred EEEEEEEeCHhHHHHHHHHhCCCHHHHHHHHH--hccCCCceEEEEE--ECCCCCHHHHHHHHHHH
Confidence 788899876665555544 34444332222 22222 34777 67888998888877765
No 408
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=29.00 E-value=1.7e+02 Score=24.21 Aligned_cols=32 Identities=25% Similarity=0.280 Sum_probs=25.3
Q ss_pred CceEEecCCCCCCHHHHHHHHhhCCCeEEEEEe
Q psy4086 138 TNLYIANLPLNFKECDLESLLAKYVTVVSTRIL 170 (305)
Q Consensus 138 ~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~ 170 (305)
.-+.|+|||+.++...|..+++. ..+....++
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm 142 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFL 142 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEE
Confidence 45689999999999999999987 556555444
No 409
>1nz8_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.58.42.1
Probab=28.94 E-value=80 Score=22.55 Aligned_cols=49 Identities=16% Similarity=0.278 Sum_probs=35.6
Q ss_pred ccceEEEEecchh-----hHHHHHHHhccCcccceecccccCCCCceEE--ecCCCCCCHHHHHHHHhhCC
Q psy4086 99 CRGYGFVDFESGG-----YALAAVKALQDKGIHAQMARQQEQDPTNLYI--ANLPLNFKECDLESLLAKYV 162 (305)
Q Consensus 99 ~~G~afV~f~~~~-----~A~~a~~~l~g~~i~~~~~~~~~~~~~~l~V--~nlp~~~te~~l~~~F~~~g 162 (305)
-.||-||++...+ ++...++...|.. =|| ++-|..++++++..++...+
T Consensus 61 fPGYVFV~~~~~~~~~~~~~~~~vr~t~gV~---------------gfvg~g~~P~pi~~~ev~~i~~~~~ 116 (119)
T 1nz8_A 61 FPGYLFIQMDLGDEEEPNEAWEVVRGTPGIT---------------GFVGAGMRPVPLSPDEVRHILEVSG 116 (119)
T ss_dssp STTEEEEEECCCSSSSCCHHHHHHHHSTTCC---------------CCCCSSSSSCBCCHHHHHHHHHHHT
T ss_pred CCCEEEEEeeccccccchhHHHHHHcCCCce---------------EEeCCCCEEeECCHHHHHHHHHHHh
Confidence 7899999998877 7777777665532 223 35577899999988886543
No 410
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=28.42 E-value=1.4e+02 Score=20.30 Aligned_cols=56 Identities=16% Similarity=0.204 Sum_probs=44.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHh
Q psy4086 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKAL 120 (305)
Q Consensus 57 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l 120 (305)
..|-|-|-|+|..+-..++.-.....|---.|..+- |.|.+.|.+.++-..|+..|
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHH
Confidence 467788999999998888877677666444555442 36999999999999999885
No 411
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=26.36 E-value=55 Score=31.27 Aligned_cols=56 Identities=7% Similarity=0.011 Sum_probs=41.0
Q ss_pred CCCCCCHHHHHHHHh----hCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCC
Q psy4086 145 LPLNFKECDLESLLA----KYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNG 200 (305)
Q Consensus 145 lp~~~te~~l~~~F~----~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 200 (305)
.+.+.+--||..+|- .+|.|+++.+...+.-..+.++++.|.+.++|.+|+..+-.
T Consensus 351 ~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i~~ 410 (658)
T 4bby_A 351 GPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIAK 410 (658)
T ss_dssp CSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred ccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHHHH
Confidence 344445558888883 57889998776655334566889999999999999887643
No 412
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=25.71 E-value=1.2e+02 Score=18.71 Aligned_cols=55 Identities=13% Similarity=0.086 Sum_probs=41.4
Q ss_pred CceEEecCCCCCCHHHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHh
Q psy4086 138 TNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLF 198 (305)
Q Consensus 138 ~~l~V~nlp~~~te~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 198 (305)
.++.|.++.-.--...|+..+.. ..|..+.+-.. .+-+.|+|.+.++..++|+.+
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~-----~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN-----EAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS-----EEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc-----CCEEEEEECCHHHHHHHHHHc
Confidence 35778888777777889999988 88988887643 456788888666777777754
No 413
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=25.50 E-value=59 Score=27.18 Aligned_cols=33 Identities=9% Similarity=0.131 Sum_probs=25.7
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhccCCeeEEEEee
Q psy4086 59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAIL 92 (305)
Q Consensus 59 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~ 92 (305)
..+.|+|||+.++..-|..+++. ..+..+.++.
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~ 143 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLV 143 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEe
Confidence 34789999999999999999987 5555444443
No 414
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=25.23 E-value=38 Score=16.95 Aligned_cols=13 Identities=15% Similarity=0.514 Sum_probs=10.9
Q ss_pred CcHHHHHHHHhcc
Q psy4086 70 TTDKDLINMCSQY 82 (305)
Q Consensus 70 ~t~~~L~~~f~~~ 82 (305)
-+|.+|+++.++|
T Consensus 13 rnekelrdfiekf 25 (28)
T 1fme_A 13 RNEKELRDFIEKF 25 (28)
T ss_dssp CCHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHh
Confidence 4688999999887
No 415
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=25.16 E-value=2e+02 Score=20.86 Aligned_cols=113 Identities=11% Similarity=-0.003 Sum_probs=57.4
Q ss_pred HHHHHHHHhccC-CeeEEEEeeCCCCCCccceEEEEecchhhHHHHHHHhccCcccceecccccCCCCceEEecCCCCC-
Q psy4086 72 DKDLINMCSQYG-PIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNF- 149 (305)
Q Consensus 72 ~~~L~~~f~~~G-~i~~~~i~~~~~~g~~~G~afV~f~~~~~A~~a~~~l~g~~i~~~~~~~~~~~~~~l~V~nlp~~~- 149 (305)
-.+|..+|.+.| .|..+.+.... ..|+--+...+.+.|.++++.+ |..+... .++.-.++...
T Consensus 20 l~~i~~~la~~~inI~~i~~~~~~----~~~~~~~~~~d~~~a~~~L~~~-G~~v~~~----------svv~v~~~d~pG 84 (144)
T 2f06_A 20 LTEVTEVLAKENINLSALCIAENA----DFGILRGIVSDPDKAYKALKDN-HFAVNIT----------DVVGISCPNVPG 84 (144)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEECS----SCEEEEEEESCHHHHHHHHHHT-TCCEEEE----------EEEEEEEESSTT
T ss_pred HHHHHHHHHHCCCCEEEEEEEecC----CCCEEEEEeCCHHHHHHHHHHc-CCeEeee----------eEEEEEeCCCCc
Confidence 466777787776 45555543211 1122212245555565555543 3222111 23222444433
Q ss_pred CHHHHHHHHhhCCC-eEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHHhCCCCC
Q psy4086 150 KECDLESLLAKYVT-VVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTL 203 (305)
Q Consensus 150 te~~l~~~F~~~g~-v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 203 (305)
.-..+.+.+...|- |..+.... . ..+....|++++.+.|.++++. .|..+
T Consensus 85 vla~i~~~L~~~~InI~~~~~~~-~--~~~~~~~i~~~d~~~A~~~L~~-~g~~v 135 (144)
T 2f06_A 85 ALAKVLGFLSAEGVFIEYMYSFA-N--NNVANVVIRPSNMDKCIEVLKE-KKVDL 135 (144)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEE-E--TTEEEEEEEESCHHHHHHHHHH-TTCEE
T ss_pred HHHHHHHHHHHCCCCEEEEEEEc-c--CCcEEEEEEeCCHHHHHHHHHH-cCCEE
Confidence 22455566655543 54544432 1 2356677899988888888876 44443
No 416
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=24.67 E-value=1e+02 Score=23.55 Aligned_cols=36 Identities=17% Similarity=0.376 Sum_probs=27.6
Q ss_pred CcHHHHHHHHhccCCe---eEEEEeeCCCCCCccceEEE
Q psy4086 70 TTDKDLINMCSQYGPI---ISTKAILDKTTNKCRGYGFV 105 (305)
Q Consensus 70 ~t~~~L~~~f~~~G~i---~~~~i~~~~~~g~~~G~afV 105 (305)
.|+++|+++=+..|.+ .++.+..+..+|+.+.|||-
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~ 41 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYH 41 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEE
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEE
Confidence 5889999999999976 35666666547888888775
No 417
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=24.54 E-value=13 Score=28.32 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=15.2
Q ss_pred HHHHHHHhhCCCeEEEEEeeCCCCCcccEEEEEec
Q psy4086 152 CDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLE 186 (305)
Q Consensus 152 ~~l~~~F~~~g~v~~v~i~~~~~g~~~g~afV~f~ 186 (305)
+|+.++|...|.|+. .. ..+||+||+-.
T Consensus 2 ~~~~~l~~~~G~Vkw---fn----~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKW---FN----VRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEE---EE----TTTTEEEEEEE
T ss_pred CcccccccceeEEEE---EE----CCCCeeEEeeC
Confidence 344555555565443 32 35889999976
No 418
>2x4i_A CAG38848, uncharacterized protein 114; unknown function, DUF1874, archeal virus; 2.20A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=24.30 E-value=2e+02 Score=20.60 Aligned_cols=66 Identities=9% Similarity=0.143 Sum_probs=48.1
Q ss_pred EEEecchhhHHHHHHHhccCcccceecccccCCCCceEEecCCCC------CCHHHHHHHHhhCCCeEEEEEe
Q psy4086 104 FVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLN------FKECDLESLLAKYVTVVSTRIL 170 (305)
Q Consensus 104 fV~f~~~~~A~~a~~~l~g~~i~~~~~~~~~~~~~~l~V~nlp~~------~te~~l~~~F~~~g~v~~v~i~ 170 (305)
||.+--+++...++..|-|..+..............++|-.|... ++.++|+++|+. |.|...++.
T Consensus 41 ~iSaIGH~sTA~lls~Llg~~ip~NR~~i~~~~GD~alv~~L~~Rl~EG~vl~~eEi~k~~e~-g~i~~~~~~ 112 (114)
T 2x4i_A 41 IINSIGHDSTIQLINSLCGTTFQKNRVEIKLEKEDKLYVVQISQRLEEGKILTLEEILKLYES-GKVQFFEII 112 (114)
T ss_dssp EEECCCCHHHHHHHHHHHCCCCCCCCCCCCBCTTCEEEEEEEC-------CCCHHHHHHHHHH-TCEEEEEEE
T ss_pred eEEeeccHHHHHHHHHHhCCCccccceeEEecCCCEEEEEEecccCCCCccCCHHHHHHHHHc-CceEEEEEe
Confidence 777778888899999998888887777666666777766555443 467999999865 567665554
No 419
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=28.98 E-value=17 Score=25.85 Aligned_cols=51 Identities=14% Similarity=0.009 Sum_probs=31.4
Q ss_pred CCcHHHHHHHHhccCCeeEEEEeeCCCCCCccceE--EEEecchhhHHHHHHHhc
Q psy4086 69 DTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYG--FVDFESGGYALAAVKALQ 121 (305)
Q Consensus 69 ~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~G~a--fV~f~~~~~A~~a~~~l~ 121 (305)
..++++|..+..+.+ +..+.+.+....|+. -|. +=.|.+.++|.+|++.|-
T Consensus 33 ~~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~-WyvVlyG~Y~s~~~A~~A~~~LP 85 (106)
T 2lfv_A 33 SSNYDNLNGWAKKEN-LKNYVVYETTRNGQP-WYVLVSGVYASKEEAKKAVSTLP 85 (106)
Confidence 345677777777776 455666554333322 122 235888999999988764
No 420
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=22.83 E-value=1.9e+02 Score=21.86 Aligned_cols=55 Identities=15% Similarity=0.169 Sum_probs=36.2
Q ss_pred eEEecCCCCCCHHHHHHHHhh-CC-CeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH
Q psy4086 140 LYIANLPLNFKECDLESLLAK-YV-TVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQ 196 (305)
Q Consensus 140 l~V~nlp~~~te~~l~~~F~~-~g-~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~ 196 (305)
-|+--+....+..+|++.++. |+ .|..|..+.-.+|.- -|+|++....+|.....
T Consensus 89 ~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~K--KAyV~La~~~dAldvAn 145 (150)
T 4a17_R 89 TMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNK--KAYIRLAADSDSLTLAN 145 (150)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCE--EEEEEECSSSCHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcE--EEEEEcCCCCcHHHHHH
Confidence 344446778899888888766 33 367776665544322 48999987766665443
No 421
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=22.51 E-value=33 Score=28.90 Aligned_cols=33 Identities=18% Similarity=0.137 Sum_probs=25.5
Q ss_pred eEEEcCCCCCCcHHHHHHHHhccCCeeEEEEee
Q psy4086 60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAIL 92 (305)
Q Consensus 60 ~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~ 92 (305)
.+.|+|||+.++..-|..+++....+..+.++.
T Consensus 116 ~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~ 148 (279)
T 3uzu_A 116 LRIIGNLPYNISSPLLFHLMSFAPVVIDQHFML 148 (279)
T ss_dssp EEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEE
T ss_pred eEEEEccCccccHHHHHHHHhccCCccEEEEEe
Confidence 478999999999999999998654555554443
No 422
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=21.83 E-value=44 Score=30.87 Aligned_cols=43 Identities=9% Similarity=0.033 Sum_probs=29.5
Q ss_pred HHHHHH--hhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHH
Q psy4086 153 DLESLL--AKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMI 195 (305)
Q Consensus 153 ~l~~~F--~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai 195 (305)
+|+.+| +.+|.|+++.+...+.......+++.|.+.++|.+|+
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~p~~~~~~~~~f~~~~~~~~~~ 261 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIV 261 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEECCSEEEEEEEEECCGGGHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEecCCeEEEEEEEeCCHHHHHHHH
Confidence 456677 3688899988776653344456789999877765543
No 423
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=21.69 E-value=2.1e+02 Score=22.18 Aligned_cols=56 Identities=11% Similarity=0.096 Sum_probs=36.7
Q ss_pred ceEEecCCC-C--------CCHHHHHHHH--hhCCCeEEEEEeeCCCCCcccEEEEEecCHH-HHHHHHH
Q psy4086 139 NLYIANLPL-N--------FKECDLESLL--AKYVTVVSTRILRDNNNTSKGVGFARLESKD-KCDQMIQ 196 (305)
Q Consensus 139 ~l~V~nlp~-~--------~te~~l~~~F--~~~g~v~~v~i~~~~~g~~~g~afV~f~~~~-~A~~Ai~ 196 (305)
.+.|-|++. . ....+|++.| ..|..+. |+.+....| ..|+|.|.|...- --..|++
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~G-h~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLG-HSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSB-EEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCC-CceeEEEEecCChHHHHHHHH
Confidence 455667775 1 3457899977 8997654 666666544 5789999997643 3334443
No 424
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=21.21 E-value=1.2e+02 Score=20.58 Aligned_cols=26 Identities=4% Similarity=0.091 Sum_probs=21.7
Q ss_pred CeeEEEEeeCCCCCCccceEEEEecc
Q psy4086 84 PIISTKAILDKTTNKCRGYGFVDFES 109 (305)
Q Consensus 84 ~i~~~~i~~~~~~g~~~G~afV~f~~ 109 (305)
+|.+++|.+-...|+-++||=|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57888888777678999999999975
No 425
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=21.10 E-value=1.2e+02 Score=19.76 Aligned_cols=51 Identities=12% Similarity=0.070 Sum_probs=26.7
Q ss_pred EecchhhHHHHHHHhccCcccceecccccCCCCceEEecCCCCCCHHHHHHHH
Q psy4086 106 DFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDLESLL 158 (305)
Q Consensus 106 ~f~~~~~A~~a~~~l~g~~i~~~~~~~~~~~~~~l~V~nlp~~~te~~l~~~F 158 (305)
-|.+.+.|++....|....+..... ....-.+|+||.....-.-+.+.+.+
T Consensus 16 aF~~~~~A~~l~~~L~~~G~~a~i~--~~~~~yRV~vGpf~s~~~A~~~~~~L 66 (81)
T 1uta_A 16 SFRGAEQAETVRAQLAFEGFDSKIT--TNNGWNRVVIGPVKGKENADSTLNRL 66 (81)
T ss_dssp EESCHHHHHHHHHHHHHHTCCEEEE--ECSSSEEEEESSCBTTTHHHHHHHHH
T ss_pred EcCCHHHHHHHHHHHHhCCCCeEEE--eCCcEEEEEECCcCCHHHHHHHHHHH
Confidence 4888999999888875443322221 22233456666443333333333333
No 426
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.07 E-value=65 Score=20.65 Aligned_cols=11 Identities=18% Similarity=0.428 Sum_probs=8.7
Q ss_pred cccEEEEEecC
Q psy4086 177 SKGVGFARLES 187 (305)
Q Consensus 177 ~~g~afV~f~~ 187 (305)
.+..++|.|+|
T Consensus 36 ~~~~ClV~FeD 46 (68)
T 2e5p_A 36 AREVCLVQFED 46 (68)
T ss_dssp TTTEEEEEETT
T ss_pred CCcEEEEEEcc
Confidence 35689999987
Done!