AmiGO: BLAST Results


BLAST match view associations BLAST with shep shep shep Protein alan shepard	protein from Drosophila willistoni	1.6e-72
BLAST match view associations BLAST with shep shep shep Protein alan shepard	protein from Drosophila grimshawi	2.0e-72
BLAST match view associations BLAST with shep shep shep Protein alan shepard	protein from Drosophila virilis	2.0e-72
BLAST match view associations BLAST with shep shep shep Protein alan shepard	protein from Drosophila erecta	2.5e-72
BLAST match view associations BLAST with shep shep shep Protein alan shepard	protein from Drosophila yakuba	2.5e-72
BLAST match view associations BLAST with shep shep shep alan shepard	protein from Drosophila melanogaster	2.3e-71
BLAST match view associations BLAST with shep shep shep Protein alan shepard	protein from Drosophila sechellia	2.3e-71
BLAST match view associations BLAST with shep shep shep Protein alan shepard	protein from Drosophila simulans	2.4e-69
BLAST match view associations BLAST with shep shep shep Protein alan shepard	protein from Drosophila mojavensis	4.4e-68
BLAST match view associations BLAST with shep shep shep Protein alan shepard	protein from Drosophila ananassae	1.7e-66
BLAST match view associations BLAST with rbms1a rbms1a rbms1a RNA binding motif, single stranded interacting protein 1a	gene_product from Danio rerio	5.1e-58
BLAST match view associations BLAST with RBMS1 RBMS1 RBMS1 RNA-binding motif, single-stranded-interacting protein 1	protein from Bos taurus	9.6e-57
BLAST match view associations BLAST with RBMS1 RBMS1 RBMS1 Uncharacterized protein	protein from Canis lupus familiaris	1.2e-56
BLAST match view associations BLAST with RBMS1 RBMS1 RBMS1 RNA-binding motif, single-stranded-interacting protein 1	protein from Homo sapiens	1.6e-56
BLAST match view associations BLAST with RBMS1 RBMS1 RBMS1 Uncharacterized protein	protein from Canis lupus familiaris	2.0e-56
BLAST match view associations BLAST with RBMS1 RBMS1 RBMS1 RNA-binding motif, single-stranded-interacting protein 1	protein from Homo sapiens	2.0e-56
BLAST match view associations BLAST with RBMS1 RBMS1 RBMS1 RNA-binding motif, single-stranded-interacting protein 1	protein from Homo sapiens	3.3e-56
BLAST match view associations BLAST with Rbms1 Rbms1 Rbms1 RNA binding motif, single stranded interacting protein 1	gene from Rattus norvegicus	4.2e-56
BLAST match view associations BLAST with Rbms1 Rbms1 Rbms1 RNA binding motif, single stranded interacting protein 1	protein from Mus musculus	5.3e-56
BLAST match view associations BLAST with rbms2b rbms2b rbms2b RNA binding motif, single stranded interacting protein 2b	gene_product from Danio rerio	6.8e-56
BLAST match view associations BLAST with RBMS2 RBMS2 RBMS2 RNA-binding motif, single-stranded-interacting protein 2	protein from Homo sapiens	1.4e-55
BLAST match view associations BLAST with LOC100525434 LOC100525434 LOC100525434 Uncharacterized protein	protein from Sus scrofa	1.8e-55
BLAST match view associations BLAST with RBMS1 RBMS1 RBMS1 Uncharacterized protein	protein from Gallus gallus	1.3e-54
BLAST match view associations BLAST with RBMS2 RBMS2 RBMS2 RNA-binding motif, single-stranded-interacting protein 2	protein from Homo sapiens	4.3e-54
BLAST match view associations BLAST with RBMS2 RBMS2 RBMS2 RNA-binding motif, single-stranded-interacting protein 2	protein from Bos taurus	8.9e-54
BLAST match view associations BLAST with RBMS3 RBMS3 RBMS3 Uncharacterized protein	protein from Canis lupus familiaris	8.9e-54
BLAST match view associations BLAST with RBMS3 RBMS3 RBMS3 RNA-binding motif, single-stranded-interacting protein 3	protein from Homo sapiens	8.9e-54
BLAST match view associations BLAST with RBMS3 RBMS3 RBMS3 RNA-binding motif, single-stranded-interacting protein 3	protein from Homo sapiens	8.9e-54
BLAST match view associations BLAST with RBMS3 RBMS3 RBMS3 Uncharacterized protein	protein from Bos taurus	1.5e-53
BLAST match view associations BLAST with RBMS3 RBMS3 RBMS3 RNA-binding motif, single-stranded-interacting protein 3	protein from Homo sapiens	1.5e-53
BLAST match view associations BLAST with RBMS3 RBMS3 RBMS3 RNA-binding motif, single-stranded-interacting protein 3	protein from Homo sapiens	1.5e-53
BLAST match view associations BLAST with RBMS2 RBMS2 RBMS2 Uncharacterized protein	protein from Canis lupus familiaris	1.9e-53
BLAST match view associations BLAST with RBMS2 RBMS2 RBMS2 Uncharacterized protein	protein from Sus scrofa	1.9e-53
BLAST match view associations BLAST with Rbms2 Rbms2 Rbms2 RNA binding motif, single stranded interacting protein 2	protein from Mus musculus	1.9e-53
BLAST match view associations BLAST with Rbms2 Rbms2 Rbms2 RNA binding motif, single stranded interacting protein 2	gene from Rattus norvegicus	2.4e-53
BLAST match view associations BLAST with rbms3 rbms3 rbms3 RNA binding motif, single stranded interacting protein	gene_product from Danio rerio	3.8e-53
BLAST match view associations BLAST with Rbms3 Rbms3 Rbms3 RNA binding motif, single stranded interacting protein	protein from Mus musculus	2.7e-52
BLAST match view associations BLAST with Rbms3 Rbms3 Rbms3 RNA binding motif, single stranded interacting protein 3	gene from Rattus norvegicus	3.5e-52
BLAST match view associations BLAST with sup-26 sup-26 sup-26	gene from Caenorhabditis elegans	7.1e-45
BLAST match view associations BLAST with RBMS1 RBMS1 RBMS1 RNA-binding motif, single-stranded-interacting protein 1	protein from Homo sapiens	1.0e-36
BLAST match view associations BLAST with RBMS3 RBMS3 RBMS3 Uncharacterized protein	protein from Gallus gallus	2.2e-25
BLAST match view associations BLAST with RBMS2 RBMS2 RBMS2 RNA-binding motif, single-stranded-interacting protein 2	protein from Homo sapiens	1.6e-24
BLAST match view associations BLAST with ELAVL1 ELAVL1 ELAVL1 Uncharacterized protein	protein from Bos taurus	7.9e-24
BLAST match view associations BLAST with Elavl1 Elavl1 Elavl1 ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R)	protein from Mus musculus	2.1e-23
BLAST match view associations BLAST with Elavl1 Elavl1 Elavl1 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	gene from Rattus norvegicus	2.1e-23
BLAST match view associations BLAST with Elavl2 Elavl2 Elavl2 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	protein from Mus musculus	2.9e-23
BLAST match view associations BLAST with Rbp9 Rbp9 Rbp9 RNA-binding protein 9	protein from Drosophila melanogaster	3.2e-23
BLAST match view associations BLAST with LOC480466 LOC480466 LOC480466 Uncharacterized protein	protein from Canis lupus familiaris	3.4e-23
BLAST match view associations BLAST with ELAVL1 ELAVL1 ELAVL1 Uncharacterized protein	protein from Sus scrofa	3.4e-23
BLAST match view associations BLAST with ELAVL2 ELAVL2 ELAVL2 Uncharacterized protein	protein from Bos taurus	3.8e-23
BLAST match view associations BLAST with ELAVL2 ELAVL2 ELAVL2 Uncharacterized protein	protein from Canis lupus familiaris	4.8e-23
BLAST match view associations BLAST with ELAVL2 ELAVL2 ELAVL2 ELAV-like protein 2	protein from Homo sapiens	4.8e-23
BLAST match view associations BLAST with ELAVL2 ELAVL2 ELAVL2 ELAV-like protein 2	protein from Homo sapiens	4.8e-23
BLAST match view associations BLAST with ELAVL1 ELAVL1 ELAVL1 cDNA FLJ60076, highly similar to ELAV-like protein 1	protein from Homo sapiens	5.4e-23
BLAST match view associations BLAST with ELAVL1 ELAVL1 ELAVL1 ELAV-like protein 1	protein from Homo sapiens	5.4e-23
BLAST match view associations BLAST with Elavl2 Elavl2 Elavl2 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	gene from Rattus norvegicus	1.6e-22
BLAST match view associations BLAST with Elavl2 Elavl2 Elavl2 ELAV-like protein 2	protein from Rattus norvegicus	1.6e-22
BLAST match view associations BLAST with exc-7 exc-7 exc-7	gene from Caenorhabditis elegans	1.4e-21
BLAST match view associations BLAST with elavl2 elavl2 elavl2 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	gene_product from Danio rerio	1.5e-21
BLAST match view associations BLAST with ELAVL4 ELAVL4 ELAVL4 Uncharacterized protein	protein from Gallus gallus	2.6e-21
BLAST match view associations BLAST with elavl3 elavl3 elavl3 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)	gene_product from Danio rerio	3.9e-21
BLAST match view associations BLAST with fne fne fne found in neurons	protein from Drosophila melanogaster	9.6e-21
BLAST match view associations BLAST with ELAVL1 ELAVL1 ELAVL1 Uncharacterized protein	protein from Gallus gallus	1.0e-20
BLAST match view associations BLAST with elavl1 elavl1 elavl1 ELAV-like protein 1	protein from Xenopus (Silurana) tropicalis	2.1e-20
BLAST match view associations BLAST with Elavl3 Elavl3 Elavl3 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)	protein from Mus musculus	2.6e-20
BLAST match view associations BLAST with Elavl3 Elavl3 Elavl3 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)	gene from Rattus norvegicus	2.6e-20
BLAST match view associations BLAST with ELAVL3 ELAVL3 ELAVL3 Uncharacterized protein	protein from Canis lupus familiaris	3.4e-20
BLAST match view associations BLAST with ELAVL3 ELAVL3 ELAVL3 ELAV-like protein 3	protein from Homo sapiens	3.4e-20
BLAST match view associations BLAST with LOC100515074 LOC100515074 LOC100515074 Uncharacterized protein	protein from Sus scrofa	3.4e-20
BLAST match view associations BLAST with ELAVL3 ELAVL3 ELAVL3 Uncharacterized protein	protein from Bos taurus	3.4e-20
BLAST match view associations BLAST with elavl1-b elavl1-b elavl1-b ELAV-like protein 1-B	protein from Xenopus laevis	4.4e-20
BLAST match view associations BLAST with elavl4 elavl4 elavl4 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	gene_product from Danio rerio	5.2e-20
BLAST match view associations BLAST with ELAVL4 ELAVL4 ELAVL4 Uncharacterized protein	protein from Gallus gallus	6.4e-20
BLAST match view associations BLAST with elavl2 elavl2 elavl2 ELAV-like protein 2	protein from Xenopus laevis	6.8e-20
BLAST match view associations BLAST with ELAVL4 ELAVL4 ELAVL4 Uncharacterized protein	protein from Bos taurus	1.0e-19
BLAST match view associations BLAST with ELAVL4 ELAVL4 ELAVL4 Uncharacterized protein	protein from Canis lupus familiaris	1.0e-19
BLAST match view associations BLAST with ELAVL4 ELAVL4 ELAVL4 ELAV-like protein 4	protein from Homo sapiens	1.1e-19
BLAST match view associations BLAST with Elavl4 Elavl4 Elavl4 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4	gene from Rattus norvegicus	1.2e-19
BLAST match view associations BLAST with ELAVL4 ELAVL4 ELAVL4 ELAV-like protein 4	protein from Homo sapiens	1.3e-19
BLAST match view associations BLAST with ELAVL4 ELAVL4 ELAVL4 Uncharacterized protein	protein from Canis lupus familiaris	1.3e-19
BLAST match view associations BLAST with ELAVL4 ELAVL4 ELAVL4 ELAV-like protein 4	protein from Homo sapiens	1.4e-19
BLAST match view associations BLAST with Elavl4 Elavl4 Elavl4 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	protein from Mus musculus	1.4e-19
BLAST match view associations BLAST with elavl1 elavl1 elavl1 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	gene_product from Danio rerio	8.3e-19
BLAST match view associations BLAST with Sxl Sxl Sxl Sex lethal	protein from Drosophila melanogaster	1.6e-18
BLAST match view associations BLAST with ssx ssx ssx sister-of-Sex-lethal	protein from Drosophila melanogaster	5.7e-18
BLAST match view associations BLAST with ELAVL2 ELAVL2 ELAVL2 ELAV-like protein 2	protein from Homo sapiens	1.6e-17
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  psy4086
        (305 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

UNIPROTKB|B4MM23 - symbol:shep "Protein alan shepard" spe...   733  1.6e-72   1
UNIPROTKB|B4IX08 - symbol:shep "Protein alan shepard" spe...   732  2.0e-72   1
UNIPROTKB|B4LFQ9 - symbol:shep "Protein alan shepard" spe...   732  2.0e-72   1
UNIPROTKB|B3NGA1 - symbol:shep "Protein alan shepard" spe...   731  2.5e-72   1
UNIPROTKB|B4PIS2 - symbol:shep "Protein alan shepard" spe...   731  2.5e-72   1
FB|FBgn0052423 - symbol:shep "alan shepard" species:7227 ...   722  2.3e-71   1
UNIPROTKB|B4HUE4 - symbol:shep "Protein alan shepard" spe...   722  2.3e-71   1
UNIPROTKB|B4QRJ0 - symbol:shep "Protein alan shepard" spe...   703  2.4e-69   1
UNIPROTKB|B4KX02 - symbol:shep "Protein alan shepard" spe...   691  4.4e-68   1
UNIPROTKB|B3M3R5 - symbol:shep "Protein alan shepard" spe...   676  1.7e-66   1
ZFIN|ZDB-GENE-030131-4967 - symbol:rbms1a "RNA binding mo...   596  5.1e-58   1
UNIPROTKB|Q3ZBP3 - symbol:RBMS1 "RNA-binding motif, singl...   584  9.6e-57   1
UNIPROTKB|E2RM13 - symbol:RBMS1 "Uncharacterized protein"...   583  1.2e-56   1
UNIPROTKB|E7ETU5 - symbol:RBMS1 "RNA-binding motif, singl...   582  1.6e-56   1
UNIPROTKB|E2RMT9 - symbol:RBMS1 "Uncharacterized protein"...   581  2.0e-56   1
UNIPROTKB|P29558 - symbol:RBMS1 "RNA-binding motif, singl...   581  2.0e-56   1
UNIPROTKB|B4DN88 - symbol:RBMS1 "RNA-binding motif, singl...   579  3.3e-56   1
RGD|1307777 - symbol:Rbms1 "RNA binding motif, single str...   578  4.2e-56   1
UNIPROTKB|Q5PQP1 - symbol:Rbms1 "RNA-binding motif, singl...   578  4.2e-56   1
MGI|MGI:1861774 - symbol:Rbms1 "RNA binding motif, single...   577  5.3e-56   1
ZFIN|ZDB-GENE-040801-51 - symbol:rbms2b "RNA binding moti...   576  6.8e-56   1
UNIPROTKB|D4A6H0 - symbol:Rbms1 "RNA-binding motif, singl...   574  1.1e-55   1
UNIPROTKB|F8W1T6 - symbol:RBMS2 "RNA-binding motif, singl...   573  1.4e-55   1
UNIPROTKB|F1RPR6 - symbol:RBMS1 "Uncharacterized protein"...   572  1.8e-55   1
UNIPROTKB|E1C5J3 - symbol:RBMS1 "Uncharacterized protein"...   566  7.8e-55   1
UNIPROTKB|O73664 - symbol:RBMS1 "Uncharacterized protein"...   564  1.3e-54   1
UNIPROTKB|Q15434 - symbol:RBMS2 "RNA-binding motif, singl...   559  4.3e-54   1
UNIPROTKB|Q3ZC34 - symbol:RBMS2 "RNA-binding motif, singl...   556  8.9e-54   1
UNIPROTKB|E2RA90 - symbol:RBMS3 "Uncharacterized protein"...   556  8.9e-54   1
UNIPROTKB|C9JIJ9 - symbol:RBMS3 "RNA-binding motif, singl...   556  8.9e-54   1
UNIPROTKB|Q6XE24 - symbol:RBMS3 "RNA-binding motif, singl...   556  8.9e-54   1
UNIPROTKB|E1BPT6 - symbol:RBMS3 "Uncharacterized protein"...   554  1.5e-53   1
UNIPROTKB|C9J9B2 - symbol:RBMS3 "RNA-binding motif, singl...   554  1.5e-53   1
UNIPROTKB|J3QT21 - symbol:RBMS3 "RNA-binding motif, singl...   554  1.5e-53   1
UNIPROTKB|F1P990 - symbol:RBMS2 "Uncharacterized protein"...   553  1.9e-53   1
UNIPROTKB|F1SLB3 - symbol:RBMS2 "Uncharacterized protein"...   553  1.9e-53   1
MGI|MGI:1861776 - symbol:Rbms2 "RNA binding motif, single...   553  1.9e-53   1
RGD|1304813 - symbol:Rbms2 "RNA binding motif, single str...   552  2.4e-53   1
UNIPROTKB|D4A988 - symbol:Rbms2 "Protein Rbms2" species:1...   552  2.4e-53   1
UNIPROTKB|E1BTJ0 - symbol:RBMS3 "Uncharacterized protein"...   550  3.8e-53   1
ZFIN|ZDB-GENE-060929-244 - symbol:rbms3 "RNA binding moti...   550  3.8e-53   1
MGI|MGI:2444477 - symbol:Rbms3 "RNA binding motif, single...   542  2.7e-52   1
RGD|1588240 - symbol:Rbms3 "RNA binding motif, single str...   541  3.5e-52   1
UNIPROTKB|D4A288 - symbol:D4A288 "Uncharacterized protein...   485  3.0e-46   1
WB|WBGene00006331 - symbol:sup-26 species:6239 "Caenorhab...   472  7.1e-45   1
UNIPROTKB|E7EPF2 - symbol:RBMS1 "RNA-binding motif, singl...   395  1.0e-36   1
POMBASE|SPBC29A10.02 - symbol:spo5 "meiotic RNA-binding p...   321  2.8e-28   1
UNIPROTKB|F6W1U9 - symbol:RBMS2 "RNA-binding motif, singl...   290  1.4e-25   1
UNIPROTKB|E1C5D8 - symbol:RBMS3 "Uncharacterized protein"...   288  2.2e-25   1
UNIPROTKB|F8VV01 - symbol:RBMS2 "RNA-binding motif, singl...   280  1.6e-24   1
UNIPROTKB|Q3ZCE2 - symbol:ELAVL1 "ELAV (Embryonic lethal,...   250  7.9e-24   2
MGI|MGI:1100851 - symbol:Elavl1 "ELAV (embryonic lethal, ...   246  2.1e-23   2
RGD|1308649 - symbol:Elavl1 "ELAV (embryonic lethal, abno...   246  2.1e-23   2
MGI|MGI:1100887 - symbol:Elavl2 "ELAV (embryonic lethal, ...   268  2.9e-23   1
FB|FBgn0010263 - symbol:Rbp9 "RNA-binding protein 9" spec...   271  3.2e-23   1
UNIPROTKB|F1PSC4 - symbol:ELAVL1 "Uncharacterized protein...   244  3.4e-23   2
UNIPROTKB|D3K5N7 - symbol:ELAVL1 "ELAV (Embryonic lethal,...   244  3.4e-23   2
UNIPROTKB|G3N063 - symbol:ELAVL2 "Uncharacterized protein...   267  3.8e-23   1
UNIPROTKB|E2RI94 - symbol:ELAVL2 "Uncharacterized protein...   266  4.8e-23   1
UNIPROTKB|B1AM49 - symbol:ELAVL2 "ELAV-like protein 2" sp...   266  4.8e-23   1
UNIPROTKB|Q12926 - symbol:ELAVL2 "ELAV-like protein 2" sp...   266  4.8e-23   1
UNIPROTKB|B4DVB8 - symbol:ELAVL1 "ELAV-like protein 1" sp...   242  5.4e-23   2
UNIPROTKB|Q15717 - symbol:ELAVL1 "ELAV-like protein 1" sp...   242  5.4e-23   2
UNIPROTKB|D4A7H6 - symbol:Elavl2 "ELAV-like protein 2" sp...   262  1.3e-22   1
RGD|628611 - symbol:Elavl2 "ELAV (embryonic lethal, abnor...   261  1.6e-22   1
UNIPROTKB|Q8CH84 - symbol:Elavl2 "ELAV-like protein 2" sp...   261  1.6e-22   1
WB|WBGene00001368 - symbol:exc-7 species:6239 "Caenorhabd...   257  1.4e-21   1
ZFIN|ZDB-GENE-040704-9 - symbol:elavl2 "ELAV (embryonic l...   253  1.5e-21   1
UNIPROTKB|E1C240 - symbol:ELAVL2 "Uncharacterized protein...   251  2.6e-21   1
ZFIN|ZDB-GENE-980526-76 - symbol:elavl3 "ELAV (embryonic ...   248  3.9e-21   1
FB|FBgn0086675 - symbol:fne "found in neurons" species:72...   203  9.6e-21   2
UNIPROTKB|F1N9I5 - symbol:ELAVL1 "Uncharacterized protein...   244  1.0e-20   1
UNIPROTKB|Q6GLB5 - symbol:elavl1 "ELAV-like protein 1" sp...   241  2.1e-20   1
MGI|MGI:109157 - symbol:Elavl3 "ELAV (embryonic lethal, a...   241  2.6e-20   1
RGD|628892 - symbol:Elavl3 "ELAV (embryonic lethal, abnor...   241  2.6e-20   1
UNIPROTKB|F1PVV1 - symbol:ELAVL3 "Uncharacterized protein...   240  3.4e-20   1
UNIPROTKB|Q14576 - symbol:ELAVL3 "ELAV-like protein 3" sp...   240  3.4e-20   1
UNIPROTKB|F1SA16 - symbol:ELAVL3 "Uncharacterized protein...   240  3.4e-20   1
UNIPROTKB|F1N4V6 - symbol:ELAVL3 "Uncharacterized protein...   240  3.4e-20   1
UNIPROTKB|Q5U259 - symbol:elavl1-b "ELAV-like protein 1-B...   238  4.4e-20   1
ZFIN|ZDB-GENE-990415-246 - symbol:elavl4 "ELAV (embryonic...   241  5.2e-20   1
UNIPROTKB|F1NLH0 - symbol:ELAVL4 "Uncharacterized protein...   238  6.4e-20   1
UNIPROTKB|Q91903 - symbol:elavl2 "ELAV-like protein 2" sp...   239  6.8e-20   1
UNIPROTKB|D4AAT0 - symbol:Elavl4 "ELAV-like protein 4" sp...   236  7.2e-20   1
UNIPROTKB|A2VDK5 - symbol:ELAVL4 "Uncharacterized protein...   236  1.0e-19   1
UNIPROTKB|J9PAL3 - symbol:ELAVL4 "Uncharacterized protein...   236  1.0e-19   1
UNIPROTKB|B1APY9 - symbol:ELAVL4 "cDNA FLJ50619, highly s...   236  1.1e-19   1
RGD|1560027 - symbol:Elavl4 "ELAV (embryonic lethal, abno...   236  1.2e-19   1
UNIPROTKB|O09032 - symbol:Elavl4 "ELAV-like protein 4" sp...   236  1.2e-19   1
UNIPROTKB|P26378 - symbol:ELAVL4 "ELAV-like protein 4" sp...   236  1.3e-19   1
UNIPROTKB|F1LRX3 - symbol:Elavl4 "ELAV-like protein 4" sp...   236  1.3e-19   1
UNIPROTKB|F1P856 - symbol:ELAVL4 "Uncharacterized protein...   236  1.3e-19   1
UNIPROTKB|F1LRL1 - symbol:Elavl4 "ELAV-like protein 4" sp...   236  1.4e-19   1
UNIPROTKB|B1APY8 - symbol:ELAVL4 "ELAV-like protein 4" sp...   236  1.4e-19   1
MGI|MGI:107427 - symbol:Elavl4 "ELAV (embryonic lethal, a...   236  1.4e-19   1
ZFIN|ZDB-GENE-990415-245 - symbol:elavl1 "ELAV (embryonic...   226  8.3e-19   1
FB|FBgn0264270 - symbol:Sxl "Sex lethal" species:7227 "Dr...   225  1.6e-18   1
ASPGD|ASPL0000051893 - symbol:AN0592 species:162425 "Emer...   231  2.2e-18   1
FB|FBgn0024987 - symbol:ssx "sister-of-Sex-lethal" specie...   225  5.7e-18   1
UNIPROTKB|B1AM48 - symbol:ELAVL2 "ELAV-like protein 2" sp...   214  1.6e-17   1

WARNING:  Descriptions of 546 database sequences were not reported due to the
          limiting value of parameter V = 100.


>UNIPROTKB|B4MM23 [details] [associations]
            symbol:shep "Protein alan shepard" species:7260 "Drosophila
            willistoni" [GO:0003674 "molecular_function" evidence=ND]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0009629 "response
            to gravity" evidence=ISS] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            GO:GO:0009629 EMBL:CH963847 eggNOG:NOG320163 OrthoDB:EOG4C8687
            RefSeq:XP_002062046.1 ProteinModelPortal:B4MM23 GeneID:6639197
            KEGG:dwi:Dwil_GK17327 FlyBase:FBgn0219326 InParanoid:B4MM23
            Uniprot:B4MM23
        Length = 581

 Score = 733 (263.1 bits), Expect = 1.6e-72, P = 1.6e-72
 Identities = 158/279 (56%), Positives = 196/279 (70%)

Query:    37 TTNNVQHNGSPGTPT----GPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAIL 92
             T  N+  NG+         G EQLSKTNLYIRGL Q TTDKDL+NMC+QYG IISTKAIL
Sbjct:   211 TNTNMGPNGTAQNQNQQGGGGEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAIL 270

Query:    93 DKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKEC 152
             DKTTNKC+GYGFVDFE   YA  AVK LQ KG+ AQMA+QQEQDPTNLYIANLP +FKE 
Sbjct:   271 DKTTNKCKGYGFVDFEQPAYAENAVKGLQAKGVQAQMAKQQEQDPTNLYIANLPPHFKET 330

Query:   153 DLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLV 212
             DLE++L+KY  VVSTRILRD    SKGVGFAR+ES++KC+Q+IQ+FNG+T+PG+K+PLLV
Sbjct:   331 DLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQIIQMFNGNTIPGAKDPLLV 390

Query:   213 KFADSGLKKRGAGAGGPNIYRGPGAEVRLWGRDSADS-QLAYEHPMTP--------IPAT 263
             KFAD G KK+       N+++ P    R W   SA+   +AY+  +           P  
Sbjct:   391 KFADGGPKKK-------NLFKTPDPNTRAWRDVSAEGIPVAYDPTLQQNGVSVNVGTPIG 443

Query:   264 IQYQRFTAGPGGTGHIPAGYTPWVPTQYVMPAPHMSQVE 302
             + Y RF+A P G G+  AG + W+P  Y+M  P ++QV+
Sbjct:   444 VPYSRFSAPPVG-GYPVAG-SQWIPG-YMMTQP-ITQVD 478


>UNIPROTKB|B4IX08 [details] [associations]
            symbol:shep "Protein alan shepard" species:7222 "Drosophila
            grimshawi" [GO:0003674 "molecular_function" evidence=ND]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0009629 "response
            to gravity" evidence=ISS] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            GO:GO:0009629 EMBL:CH916366 eggNOG:NOG320163 OrthoDB:EOG4C8687
            RefSeq:XP_001983966.1 ProteinModelPortal:B4IX08
            EnsemblMetazoa:FBtr0150687 GeneID:6558604 KEGG:dgr:Dgri_GH15273
            FlyBase:FBgn0122748 InParanoid:B4IX08 OMA:DDQYSSS Uniprot:B4IX08
        Length = 609

 Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
 Identities = 162/280 (57%), Positives = 194/280 (69%)

Query:    37 TTNNVQHNGSPGTPT-----GPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAI 91
             TTN     G  GT       G EQLSKTNLYIRGL Q TTDKDLINMC+QYG IISTKAI
Sbjct:   230 TTNTNTTMGPNGTAQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLINMCAQYGTIISTKAI 289

Query:    92 LDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKE 151
             LDKTTNKC+GYGFVDFE   YA  AVK LQ KG+ AQMA+QQEQDPTNLYIANLP +FKE
Sbjct:   290 LDKTTNKCKGYGFVDFEQPAYAEGAVKGLQAKGVQAQMAKQQEQDPTNLYIANLPPHFKE 349

Query:   152 CDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLL 211
              DLE++LAKY  VVSTRILRD    SKGVGFAR+ES++KC+Q+IQ+FNG+T+PG+K+PLL
Sbjct:   350 TDLEAMLAKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQIIQMFNGNTIPGAKDPLL 409

Query:   212 VKFADSGLKKRGAGAGGPNIYRGPGAEVRLWGRDSADS-QLAYEHPMTP--------IPA 262
             VKFAD G KK+       N+++ P    R W   SA+   +AY+  M           P 
Sbjct:   410 VKFADGGPKKK-------NLFKTPDPSARAWRDVSAEGIPVAYDPSMQQNGVSVNVGTPI 462

Query:   263 TIQYQRFTAGPGGTGHIPAGYTPWVPTQYVMPAPHMSQVE 302
              + Y RF A   G G+  AG + W+P  Y+M  P ++QV+
Sbjct:   463 GVPYSRFGAPQVG-GYPVAG-SQWIPG-YMMTQP-ITQVD 498


>UNIPROTKB|B4LFQ9 [details] [associations]
            symbol:shep "Protein alan shepard" species:7244 "Drosophila
            virilis" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0009629 "response to gravity"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            GO:GO:0009629 EMBL:CH940647 eggNOG:NOG320163 OrthoDB:EOG4C8687
            RefSeq:XP_002046944.1 ProteinModelPortal:B4LFQ9 GeneID:6622264
            KEGG:dvi:Dvir_GJ12205 FlyBase:FBgn0199455 InParanoid:B4LFQ9
            Uniprot:B4LFQ9
        Length = 595

 Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
 Identities = 162/280 (57%), Positives = 194/280 (69%)

Query:    37 TTNNVQHNGSPGTPT-----GPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAI 91
             TTN     G  GT       G EQLSKTNLYIRGL Q TTDKDLINMC+QYG IISTKAI
Sbjct:   216 TTNTNTTMGPNGTAQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLINMCAQYGTIISTKAI 275

Query:    92 LDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKE 151
             LDKTTNKC+GYGFVDFE   YA  AVK LQ KG+ AQMA+QQEQDPTNLYIANLP +FKE
Sbjct:   276 LDKTTNKCKGYGFVDFEQPAYAEGAVKGLQAKGVQAQMAKQQEQDPTNLYIANLPPHFKE 335

Query:   152 CDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLL 211
              DLE++LAKY  VVSTRILRD    SKGVGFAR+ES++KC+Q+IQ+FNG+T+PG+K+PLL
Sbjct:   336 TDLEAMLAKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQIIQMFNGNTIPGAKDPLL 395

Query:   212 VKFADSGLKKRGAGAGGPNIYRGPGAEVRLWGRDSADS-QLAYEHPMTP--------IPA 262
             VKFAD G KK+       N+++ P    R W   SA+   +AY+  M           P 
Sbjct:   396 VKFADGGPKKK-------NLFKTPDPNARAWRDVSAEGIPVAYDPTMQQNGVSVNVGTPI 448

Query:   263 TIQYQRFTAGPGGTGHIPAGYTPWVPTQYVMPAPHMSQVE 302
              + Y RF A   G G+  AG + W+P  Y+M  P ++QV+
Sbjct:   449 GVPYSRFGAPQVG-GYPVAG-SQWIPG-YMMTQP-ITQVD 484


>UNIPROTKB|B3NGA1 [details] [associations]
            symbol:shep "Protein alan shepard" species:7220 "Drosophila
            erecta" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0009629 "response to gravity"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            GO:GO:0009629 EMBL:CH954178 OrthoDB:EOG4C8687 RefSeq:XP_001971976.1
            ProteinModelPortal:B3NGA1 EnsemblMetazoa:FBtr0134193 GeneID:6544279
            KEGG:der:Dere_GG14139 FlyBase:FBgn0106400 Uniprot:B3NGA1
        Length = 582

 Score = 731 (262.4 bits), Expect = 2.5e-72, P = 2.5e-72
 Identities = 159/280 (56%), Positives = 196/280 (70%)

Query:    37 TTNNVQHNGSPGT-----PTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAI 91
             TTN   + G  GT       G EQLSKTNLYIRGL Q TTDKDL+NMC+QYG IISTKAI
Sbjct:   204 TTNTNTNMGPNGTVQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAI 263

Query:    92 LDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKE 151
             LDKTTNKC+GYGFVDFE   +A  AVK LQ KG+ AQMA+QQEQDPTNLYIANLP +FKE
Sbjct:   264 LDKTTNKCKGYGFVDFEQPAFAECAVKGLQGKGVQAQMAKQQEQDPTNLYIANLPPHFKE 323

Query:   152 CDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLL 211
              DLE++L+KY  VVSTRILRD    SKGVGFAR+ES++KC+Q+IQ+FNG+T+PG+K+PLL
Sbjct:   324 TDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQIIQMFNGNTIPGAKDPLL 383

Query:   212 VKFADSGLKKRGAGAGGPNIYRGPGAEVRLWGRDSADS-QLAYEHPMTP--------IPA 262
             VKFAD G KK+       N+++ P    R W   SA+   +AY+  M           P 
Sbjct:   384 VKFADGGPKKK-------NLFKTPDPNARAWRDVSAEGIPVAYDPTMQQNGVSVNVGTPI 436

Query:   263 TIQYQRFTAGPGGTGHIPAGYTPWVPTQYVMPAPHMSQVE 302
              + Y RF+A   G G+  AG + W+P  Y+M  P ++QV+
Sbjct:   437 GVPYSRFSAPQVG-GYPVAG-SQWIPG-YMMTQP-ITQVD 472


>UNIPROTKB|B4PIS2 [details] [associations]
            symbol:shep "Protein alan shepard" species:7245 "Drosophila
            yakuba" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0009629 "response to gravity"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            GO:GO:0009629 EMBL:CM000159 eggNOG:NOG320163 OrthoDB:EOG4C8687
            RefSeq:XP_002093780.1 ProteinModelPortal:B4PIS2
            EnsemblMetazoa:FBtr0267086 GeneID:6533045 KEGG:dya:Dyak_GE20568
            FlyBase:FBgn0237877 Uniprot:B4PIS2
        Length = 582

 Score = 731 (262.4 bits), Expect = 2.5e-72, P = 2.5e-72
 Identities = 159/280 (56%), Positives = 196/280 (70%)

Query:    37 TTNNVQHNGSPGT-----PTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAI 91
             TTN   + G  GT       G EQLSKTNLYIRGL Q TTDKDL+NMC+QYG IISTKAI
Sbjct:   204 TTNTNTNMGPNGTVQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAI 263

Query:    92 LDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKE 151
             LDKTTNKC+GYGFVDFE   +A  AVK LQ KG+ AQMA+QQEQDPTNLYIANLP +FKE
Sbjct:   264 LDKTTNKCKGYGFVDFEQPAFAECAVKGLQGKGVQAQMAKQQEQDPTNLYIANLPPHFKE 323

Query:   152 CDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLL 211
              DLE++L+KY  VVSTRILRD    SKGVGFAR+ES++KC+Q+IQ+FNG+T+PG+K+PLL
Sbjct:   324 TDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQIIQMFNGNTIPGAKDPLL 383

Query:   212 VKFADSGLKKRGAGAGGPNIYRGPGAEVRLWGRDSADS-QLAYEHPMTP--------IPA 262
             VKFAD G KK+       N+++ P    R W   SA+   +AY+  M           P 
Sbjct:   384 VKFADGGPKKK-------NLFKTPDPNARAWRDVSAEGIPVAYDPTMQQNGVSVNVGTPI 436

Query:   263 TIQYQRFTAGPGGTGHIPAGYTPWVPTQYVMPAPHMSQVE 302
              + Y RF+A   G G+  AG + W+P  Y+M  P ++QV+
Sbjct:   437 GVPYSRFSAPQVG-GYPVAG-SQWIPG-YMMTQP-ITQVD 472


>FB|FBgn0052423 [details] [associations]
            symbol:shep "alan shepard" species:7227 "Drosophila
            melanogaster" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005575
            "cellular_component" evidence=ND] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0042332 "gravitaxis" evidence=IMP] [GO:0009629 "response to
            gravity" evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 EMBL:AE014296 GO:GO:0000166 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0009629 GeneTree:ENSGT00630000089747
            eggNOG:NOG320163 HSSP:Q15434 OrthoDB:EOG4C8687 EMBL:AY060954
            EMBL:AY060995 EMBL:AY094948 EMBL:AY118564 RefSeq:NP_001163350.1
            RefSeq:NP_729054.3 RefSeq:NP_729055.1 RefSeq:NP_729056.1
            RefSeq:NP_729057.2 UniGene:Dm.20861 ProteinModelPortal:Q8MSV2
            SMR:Q8MSV2 MINT:MINT-339377 PaxDb:Q8MSV2 PRIDE:Q8MSV2
            EnsemblMetazoa:FBtr0077172 GeneID:38605 KEGG:dme:Dmel_CG32423
            UCSC:CG32423-RA CTD:38605 FlyBase:FBgn0052423 InParanoid:Q9VRK5
            OMA:LVNMCAQ PhylomeDB:Q8MSV2 GenomeRNAi:38605 NextBio:809487
            Bgee:Q8MSV2 Uniprot:Q8MSV2
        Length = 578

 Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
 Identities = 156/271 (57%), Positives = 190/271 (70%)

Query:    37 TTNNVQHNGSPGT-----PTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAI 91
             TTN   + G  GT       G EQLSKTNLYIRGL Q TTDKDL+NMC+QYG IISTKAI
Sbjct:   204 TTNTNTNMGPNGTVQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAI 263

Query:    92 LDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKE 151
             LDKTTNKC+GYGFVDFE   +A  AVK LQ KG+ AQMA+QQEQDPTNLYIANLP +FKE
Sbjct:   264 LDKTTNKCKGYGFVDFEQPAFAECAVKGLQGKGVQAQMAKQQEQDPTNLYIANLPPHFKE 323

Query:   152 CDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLL 211
              DLE++L+KY  VVSTRILRD    SKGVGFAR+ES++KC+Q+IQ+FNG+T+PG+K+PLL
Sbjct:   324 TDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQIIQMFNGNTIPGAKDPLL 383

Query:   212 VKFADSGLKKRGAGAGGPNIYRGPGAEVRLWGRDSADS-QLAYEHPMTP--------IPA 262
             VKFAD G KK+       N+++ P    R W   SA+   +AY+  M           P 
Sbjct:   384 VKFADGGPKKK-------NLFKTPDPNARAWRDVSAEGIPVAYDPTMQQNGVSVNVGTPI 436

Query:   263 TIQYQRFTAGPGGTGHIPAGYTPWVPTQYVM 293
              + Y RF+A   G G+  AG + W+P  Y+M
Sbjct:   437 GVPYSRFSAPQVG-GYPVAG-SQWIPG-YMM 464


>UNIPROTKB|B4HUE4 [details] [associations]
            symbol:shep "Protein alan shepard" species:7238 "Drosophila
            sechellia" [GO:0003674 "molecular_function" evidence=ND]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0009629 "response
            to gravity" evidence=ISS] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            GO:GO:0009629 EMBL:CH480817 OrthoDB:EOG4C8687 RefSeq:XP_002035429.1
            ProteinModelPortal:B4HUE4 EnsemblMetazoa:FBtr0196912 GeneID:6610863
            KEGG:dse:Dsec_GM13927 FlyBase:FBgn0168857 Uniprot:B4HUE4
        Length = 579

 Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
 Identities = 156/271 (57%), Positives = 190/271 (70%)

Query:    37 TTNNVQHNGSPGT-----PTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAI 91
             TTN   + G  GT       G EQLSKTNLYIRGL Q TTDKDL+NMC+QYG IISTKAI
Sbjct:   204 TTNTNTNMGPNGTVQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAI 263

Query:    92 LDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKE 151
             LDKTTNKC+GYGFVDFE   +A  AVK LQ KG+ AQMA+QQEQDPTNLYIANLP +FKE
Sbjct:   264 LDKTTNKCKGYGFVDFEQPAFAECAVKGLQGKGVQAQMAKQQEQDPTNLYIANLPPHFKE 323

Query:   152 CDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLL 211
              DLE++L+KY  VVSTRILRD    SKGVGFAR+ES++KC+Q+IQ+FNG+T+PG+K+PLL
Sbjct:   324 TDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQIIQMFNGNTIPGAKDPLL 383

Query:   212 VKFADSGLKKRGAGAGGPNIYRGPGAEVRLWGRDSADS-QLAYEHPMTP--------IPA 262
             VKFAD G KK+       N+++ P    R W   SA+   +AY+  M           P 
Sbjct:   384 VKFADGGPKKK-------NLFKTPDPNARAWRDVSAEGIPVAYDPTMQQNGVSVNVGTPI 436

Query:   263 TIQYQRFTAGPGGTGHIPAGYTPWVPTQYVM 293
              + Y RF+A   G G+  AG + W+P  Y+M
Sbjct:   437 GVPYSRFSAPQVG-GYPVAG-SQWIPG-YMM 464


>UNIPROTKB|B4QRJ0 [details] [associations]
            symbol:shep "Protein alan shepard" species:7240 "Drosophila
            simulans" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0009629 "response to gravity"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            GO:GO:0009629 EMBL:CM000363 OrthoDB:EOG4C8687 RefSeq:XP_002083716.1
            ProteinModelPortal:B4QRJ0 EnsemblMetazoa:FBtr0213117 GeneID:6736860
            KEGG:dsi:Dsim_GD13207 FlyBase:FBgn0184928 Uniprot:B4QRJ0
        Length = 576

 Score = 703 (252.5 bits), Expect = 2.4e-69, P = 2.4e-69
 Identities = 155/271 (57%), Positives = 188/271 (69%)

Query:    37 TTNNVQHNGSPGT-----PTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAI 91
             TTN   + G  GT       G EQLSKTNLYIRGL Q TTDKDL+NMC+QYG IISTKAI
Sbjct:   204 TTNTNTNMGPNGTVQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAI 263

Query:    92 LDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKE 151
             LDKTTNKC  YGFVDFE   +A  AVK LQ KG+ AQMA+QQEQDPTNLYIANLP +FKE
Sbjct:   264 LDKTTNKC--YGFVDFEQPAFAECAVKGLQGKGVQAQMAKQQEQDPTNLYIANLPPHFKE 321

Query:   152 CDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLL 211
              DLE++L+KY  VVSTRILRD    SKGVGFAR+ES++KC+Q+IQ+FNG+T+PG+K+PLL
Sbjct:   322 TDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQIIQMFNGNTIPGAKDPLL 381

Query:   212 VKFADSGLKKRGAGAGGPNIYRGPGAEVRLWGRDSADS-QLAYEHPMTP--------IPA 262
             VKFAD G KK+       N+++ P    R W   SA+   +AY+  M           P 
Sbjct:   382 VKFADGGPKKK-------NLFKTPDPNARAWRDVSAEGIPVAYDPTMQQNGVSVNVGTPI 434

Query:   263 TIQYQRFTAGPGGTGHIPAGYTPWVPTQYVM 293
              + Y RF+A   G G+  AG + W+P  Y+M
Sbjct:   435 GVPYSRFSAPQVG-GYPVAG-SQWIPG-YMM 462


>UNIPROTKB|B4KX02 [details] [associations]
            symbol:shep "Protein alan shepard" species:7230 "Drosophila
            mojavensis" [GO:0003674 "molecular_function" evidence=ND]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0009629 "response
            to gravity" evidence=ISS] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            GO:GO:0009629 EMBL:CH933809 OrthoDB:EOG4C8687 RefSeq:XP_002008147.1
            ProteinModelPortal:B4KX02 EnsemblMetazoa:FBtr0162707 GeneID:6582444
            KEGG:dmo:Dmoj_GI11982 FlyBase:FBgn0134739 InParanoid:B4KX02
            Uniprot:B4KX02
        Length = 592

 Score = 691 (248.3 bits), Expect = 4.4e-68, P = 4.4e-68
 Identities = 160/291 (54%), Positives = 193/291 (66%)

Query:    37 TTNNVQHNGSPGTPT-----GPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAI 91
             TTN     G  GT       G EQLSKTNLYIRGL Q TTDKDLINMC+QYG IISTKAI
Sbjct:   202 TTNTNTTMGPNGTAQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLINMCAQYGTIISTKAI 261

Query:    92 LDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR-----------QQEQDPTNL 140
             LDKTTNKC+GYGFVDFE   YA  AVK LQ KG+ AQMA+           QQEQDPTNL
Sbjct:   262 LDKTTNKCKGYGFVDFEQPAYAEGAVKGLQAKGVQAQMAKVGIWVLHRPAIQQEQDPTNL 321

Query:   141 YIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNG 200
             YIANLP +FKE DLE++LAK+  VVSTRILRD    SKGVGFAR+ES++KC+Q+IQ+FNG
Sbjct:   322 YIANLPPHFKETDLEAMLAKFGQVVSTRILRDQQMNSKGVGFARMESREKCEQIIQMFNG 381

Query:   201 STLPGSKEPLLVKFADSGLKKRGAGAGGPNIYRGPGAEVRLWGRDSADS-QLAYEHPMTP 259
             +T+ G+K+PLLVKFAD G KK+       N+++ P    R W   SA+   +AY+  M  
Sbjct:   382 NTITGAKDPLLVKFADGGPKKK-------NLFKTPDPNARAWRDVSAEGIPVAYDPTMQQ 434

Query:   260 --------IPATIQYQRFTAGPGGTGHIPAGYTPWVPTQYVMPAPHMSQVE 302
                      P  + Y RF A   G G+  AG + W+P  Y+M  P ++QV+
Sbjct:   435 NGVSVNVGTPIGVPYSRFGAPQVG-GYPVAG-SQWIPG-YMMTQP-ITQVD 481


>UNIPROTKB|B3M3R5 [details] [associations]
            symbol:shep "Protein alan shepard" species:7217 "Drosophila
            ananassae" [GO:0003674 "molecular_function" evidence=ND]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0009629 "response
            to gravity" evidence=ISS] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            GO:GO:0009629 EMBL:CH902618 eggNOG:NOG320163 RefSeq:XP_001957552.1
            ProteinModelPortal:B3M3R5 GeneID:6493340 KEGG:dan:Dana_GF10470
            FlyBase:FBgn0087511 InParanoid:B3M3R5 OrthoDB:EOG4C8687
            Uniprot:B3M3R5
        Length = 597

 Score = 676 (243.0 bits), Expect = 1.7e-66, P = 1.7e-66
 Identities = 154/288 (53%), Positives = 192/288 (66%)

Query:    37 TTNNVQHNGSPGTPT--GPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDK 94
             T  N+  NG+       G EQLSKTNLYIRGL Q TTDKDL+NMC+QYG IISTKAILDK
Sbjct:   212 TNTNMGPNGTAQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDK 271

Query:    95 TTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR-----------QQEQDPTNLYIA 143
             TTNKC  YGFVDFE   +A  AVK LQ KG+ AQMA+           QQEQDPTNLYIA
Sbjct:   272 TTNKC--YGFVDFEQPAFAECAVKGLQGKGVQAQMAKVGIWVLHRPAIQQEQDPTNLYIA 329

Query:   144 NLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTL 203
             NLP ++KE DLE++L+KY  VVSTRILRD    SKGVGFAR+ES++KC+Q+IQ+FNG+T+
Sbjct:   330 NLPPHYKETDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQIIQMFNGNTI 389

Query:   204 PGSKEPLLVKFADSGLKKRGAGAGGPNIYRGPGAEVRLWGRDSADS-QLAYEHPMTP--- 259
             PG K+PLLVKFAD G KK+       N+++ P    R W   SA+   +AY+  +     
Sbjct:   390 PGGKDPLLVKFADGGPKKK-------NLFKTPDPNARAWRDVSAEGIPVAYDPTLQQNGV 442

Query:   260 -----IPATIQYQRFTAGPGGTGHIPAGYTPWVPTQYVMPAPHMSQVE 302
                   P  + Y RF+A   G G+  AG + W+P  Y+M  P ++QV+
Sbjct:   443 SVNVGTPIGVPYSRFSAPQVG-GYPVAG-SQWIPG-YMMTQP-ITQVD 486


>ZFIN|ZDB-GENE-030131-4967 [details] [associations]
            symbol:rbms1a "RNA binding motif, single stranded
            interacting protein 1a" species:7955 "Danio rerio" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-030131-4967 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GeneTree:ENSGT00630000089747 EMBL:CR792451
            IPI:IPI00507907 Ensembl:ENSDART00000064860 Bgee:E7FAG7
            Uniprot:E7FAG7
        Length = 398

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 140/278 (50%), Positives = 175/278 (62%)

Query:    35 PITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDK 94
             P T ++  ++ S  + TG EQLSKTNLYIRGL   TTD DL+ +C  YG I+STKAILDK
Sbjct:    33 PSTNSSTNNSSSSSSTTGWEQLSKTNLYIRGLPPGTTDHDLVKLCQPYGKIVSTKAILDK 92

Query:    95 TTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDL 154
             TTNKC+GYGFVDF+S   A  AV AL+  G+ AQMA+QQEQDPTNLY++NLP++  E +L
Sbjct:    93 TTNKCKGYGFVDFDSPVSAQKAVAALKTNGVQAQMAKQQEQDPTNLYLSNLPVSMDEQEL 152

Query:   155 ESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNG------STLPGSKE 208
             E+LL  +  VVSTRILRD N  S+GVGFAR+ES +KCD +I  FNG      S + G+ E
Sbjct:   153 ENLLKPFGQVVSTRILRDTNGMSRGVGFARMESTEKCDAVISHFNGKFIKSSSGMLGASE 212

Query:   209 PLLVKFADSGLKKRGAGAGG-PNIYRGP-GAEVRLWGRD-SADSQLAYEHPMTPIPATIQ 265
             PLL KFAD G KKR + A   PN       AEVRL G   + D   A ++     P  + 
Sbjct:   213 PLLCKFADGGQKKRQSQAKYIPNGRTWTRDAEVRLSGMTLTYDPNTALQNGYYAAPYAMG 272

Query:   266 YQRFTAGPGGTGHI-PAGYTP-----WVPTQ-YVMPAP 296
               R    PG + +I P    P     W+P Q Y+M  P
Sbjct:   273 -NRLMTQPGVSPYISPISTYPVQNPSWMPHQPYIMQHP 309


>UNIPROTKB|Q3ZBP3 [details] [associations]
            symbol:RBMS1 "RNA-binding motif,
            single-stranded-interacting protein 1" species:9913 "Bos taurus"
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006260 "DNA replication"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
            "DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0003677
            GO:GO:0006260 Gene3D:3.30.70.330 GO:GO:0003723
            GeneTree:ENSGT00630000089747 EMBL:BC103186 IPI:IPI00696485
            RefSeq:NP_001030438.1 UniGene:Bt.44980 UniGene:Bt.91245 HSSP:P29558
            ProteinModelPortal:Q3ZBP3 SMR:Q3ZBP3 PRIDE:Q3ZBP3
            Ensembl:ENSBTAT00000006826 GeneID:526135 KEGG:bta:526135 CTD:5937
            eggNOG:NOG320163 HOGENOM:HOG000008467 HOVERGEN:HBG053108
            InParanoid:Q3ZBP3 OMA:THVQTAA OrthoDB:EOG469QV2 NextBio:20874311
            Uniprot:Q3ZBP3
        Length = 403

 Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
 Identities = 140/284 (49%), Positives = 180/284 (63%)

Query:    35 PITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDK 94
             P TT++  +N S  + +G +QLSKTNLYIRGL  +TTD+DL+ +C  YG I+STKAILDK
Sbjct:    39 PSTTSS-NNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDK 97

Query:    95 TTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDL 154
             TTNKC+GYGFVDF+S   A  AV AL+  G+ AQMA+QQEQDPTNLYI+NLPL+  E +L
Sbjct:    98 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQEL 157

Query:   155 ESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGS---TLPGSK---E 208
             E++L  +  V+STRILRD++ TS+GVGFAR+ES +KC+ +I  FNG    T PG     E
Sbjct:   158 ENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 217

Query:   209 PLLVKFADSGLKKRGAGAGGPNIYRGPGAEVRLWGRDS-ADSQLAYEHPMT--------P 259
             PLL KFAD G KKR      PN Y   G   R W R+  A   L Y+ P T        P
Sbjct:   218 PLLCKFADGGQKKRQ----NPNKYIPNG---RPWHREGEAGMTLTYD-PTTAAIQNGFYP 269

Query:   260 IPATIQYQRFTAGPGGTGHI--P-AGYTPWVPTQYVMPAPHMSQ 300
              P +I   R       T +I  P + Y    P+ ++ P P++ Q
Sbjct:   270 SPYSIATNRMITQTSITPYIASPVSAYQVQSPS-WMQPQPYILQ 312


>UNIPROTKB|E2RM13 [details] [associations]
            symbol:RBMS1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GeneTree:ENSGT00630000089747 EMBL:AAEX03017702
            EMBL:AAEX03017703 Ensembl:ENSCAFT00000015804 Uniprot:E2RM13
        Length = 404

 Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
 Identities = 139/283 (49%), Positives = 181/283 (63%)

Query:    35 PITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDK 94
             P TT++  +N S  + +G +QLSKTNLYIRGL  +TTD+DL+ +C  YG I+STKAILDK
Sbjct:    37 PSTTSS-NNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDK 95

Query:    95 TTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDL 154
             TTNKC+GYGFVDF+S   A  AV AL+  G+ AQMA+QQEQDPTNLYI+NLPL+  E +L
Sbjct:    96 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQEL 155

Query:   155 ESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGS---TLPGSK---E 208
             E++L  +  V+STRILRD++ TS+GVGFAR+ES +KC+ +I  FNG    T PG     E
Sbjct:   156 ENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 215

Query:   209 PLLVKFADSGLKKRGAGAGGPNIYRGPG------AEVRLWGRD-SAD-SQLAYEHPMTPI 260
             PLL KFAD G KKR      PN Y   G       EVRL G   + D +  A ++   P 
Sbjct:   216 PLLCKFADGGQKKRQ----NPNKYIPNGRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPS 271

Query:   261 PATIQYQRFTAGPGGTGHI--P-AGYTPWVPTQYVMPAPHMSQ 300
             P +I   R       T +I  P + Y    P+ ++ P P++ Q
Sbjct:   272 PYSIATNRMITQTSLTPYIASPVSAYQVQSPS-WMQPQPYILQ 313


>UNIPROTKB|E7ETU5 [details] [associations]
            symbol:RBMS1 "RNA-binding motif,
            single-stranded-interacting protein 1" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:AC092153 EMBL:AC104598 EMBL:AC131754 IPI:IPI00033611
            HGNC:HGNC:9907 ChiTaRS:RBMS1 EMBL:AC133105 SMR:E7ETU5
            Ensembl:ENST00000409075 Ensembl:ENST00000409289
            Ensembl:ENST00000409972 Uniprot:E7ETU5
        Length = 370

 Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
 Identities = 140/284 (49%), Positives = 179/284 (63%)

Query:    35 PITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDK 94
             P TT++  +N S  + +G +QLSKTNLYIRGL   TTD+DL+ +C  YG I+STKAILDK
Sbjct:     6 PSTTSS-NNNSSSSSNSGWDQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDK 64

Query:    95 TTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDL 154
             TTNKC+GYGFVDF+S   A  AV AL+  G+ AQMA+QQEQDPTNLYI+NLPL+  E +L
Sbjct:    65 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQEL 124

Query:   155 ESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGS---TLPGSK---E 208
             E++L  +  V+STRILRD++ TS+GVGFAR+ES +KC+ +I  FNG    T PG     E
Sbjct:   125 ENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 184

Query:   209 PLLVKFADSGLKKRGAGAGGPNIYRGPGAEVRLWGRDS-ADSQLAYEHPMT--------P 259
             PLL KFAD G KKR      PN Y   G   R W R+  A   L Y+ P T        P
Sbjct:   185 PLLCKFADGGQKKRQ----NPNKYIPNG---RPWHREGEAGMTLTYD-PTTAAIQNGFYP 236

Query:   260 IPATIQYQRFTAGPGGTGHI--P-AGYTPWVPTQYVMPAPHMSQ 300
              P +I   R       T +I  P + Y    P+ ++ P P++ Q
Sbjct:   237 SPYSIATNRMITQTSITPYIASPVSAYQVQSPS-WMQPQPYILQ 279


>UNIPROTKB|E2RMT9 [details] [associations]
            symbol:RBMS1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GeneTree:ENSGT00630000089747 OMA:THVQTAA
            EMBL:AAEX03017702 EMBL:AAEX03017703 Ensembl:ENSCAFT00000015788
            NextBio:20854045 Uniprot:E2RMT9
        Length = 420

 Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
 Identities = 130/238 (54%), Positives = 162/238 (68%)

Query:    35 PITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDK 94
             P TT++  +N S  + +G +QLSKTNLYIRGL  +TTD+DL+ +C  YG I+STKAILDK
Sbjct:    40 PSTTSS-NNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDK 98

Query:    95 TTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDL 154
             TTNKC+GYGFVDF+S   A  AV AL+  G+ AQMA+QQEQDPTNLYI+NLPL+  E +L
Sbjct:    99 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQEL 158

Query:   155 ESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGS---TLPGSK---E 208
             E++L  +  V+STRILRD++ TS+GVGFAR+ES +KC+ +I  FNG    T PG     E
Sbjct:   159 ENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 218

Query:   209 PLLVKFADSGLKKRGAGAGGPNIYRGPGAEVRLWGRDS-ADSQLAYEHPMTPIPATIQ 265
             PLL KFAD G KKR      PN Y   G   R W R+  A   L Y+    P  A IQ
Sbjct:   219 PLLCKFADGGQKKRQ----NPNKYIPNG---RPWHREGEAGMTLTYD----PTTAAIQ 265


>UNIPROTKB|P29558 [details] [associations]
            symbol:RBMS1 "RNA-binding motif,
            single-stranded-interacting protein 1" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003690
            "double-stranded DNA binding" evidence=NAS] [GO:0006260 "DNA
            replication" evidence=NAS] [GO:0005634 "nucleus" evidence=NAS]
            [GO:0003723 "RNA binding" evidence=NAS] [GO:0003697
            "single-stranded DNA binding" evidence=NAS] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0006396 "RNA processing" evidence=TAS]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 GO:GO:0006260 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0006396 GO:GO:0003690 GO:GO:0003697
            EMBL:AC092153 CTD:5937 eggNOG:NOG320163 HOVERGEN:HBG053108
            OrthoDB:EOG469QV2 EMBL:D28482 EMBL:X77494 EMBL:AC104598
            EMBL:AC131754 EMBL:BC012992 EMBL:BC012993 EMBL:BC018951 EMBL:X64652
            IPI:IPI00033611 IPI:IPI00929296 IPI:IPI00941661 PIR:I38042
            PIR:S19873 PIR:S47659 PIR:S53612 RefSeq:NP_002888.1
            RefSeq:NP_058520.1 UniGene:Hs.470412 PDB:1X5O PDBsum:1X5O
            ProteinModelPortal:P29558 SMR:P29558 STRING:P29558
            PhosphoSite:P29558 DMDM:55977783 PaxDb:P29558 PRIDE:P29558
            DNASU:5937 Ensembl:ENST00000348849 GeneID:5937 KEGG:hsa:5937
            UCSC:uc002ubn.3 UCSC:uc002ubo.3 GeneCards:GC02M161128
            HGNC:HGNC:9907 HPA:HPA047943 MIM:602310 neXtProt:NX_P29558
            PharmGKB:PA34273 InParanoid:P29558 PhylomeDB:P29558 ChiTaRS:RBMS1
            EvolutionaryTrace:P29558 GenomeRNAi:5937 NextBio:23144
            ArrayExpress:P29558 Bgee:P29558 CleanEx:HS_RBMS1
            Genevestigator:P29558 GermOnline:ENSG00000153250 Uniprot:P29558
        Length = 406

 Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
 Identities = 139/283 (49%), Positives = 180/283 (63%)

Query:    35 PITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDK 94
             P TT++  +N S  + +G +QLSKTNLYIRGL   TTD+DL+ +C  YG I+STKAILDK
Sbjct:    39 PSTTSS-NNNSSSSSNSGWDQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDK 97

Query:    95 TTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDL 154
             TTNKC+GYGFVDF+S   A  AV AL+  G+ AQMA+QQEQDPTNLYI+NLPL+  E +L
Sbjct:    98 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQEL 157

Query:   155 ESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGS---TLPGSK---E 208
             E++L  +  V+STRILRD++ TS+GVGFAR+ES +KC+ +I  FNG    T PG     E
Sbjct:   158 ENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 217

Query:   209 PLLVKFADSGLKKRGAGAGGPNIYRGPG------AEVRLWGRD-SAD-SQLAYEHPMTPI 260
             PLL KFAD G KKR      PN Y   G       EVRL G   + D +  A ++   P 
Sbjct:   218 PLLCKFADGGQKKRQ----NPNKYIPNGRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPS 273

Query:   261 PATIQYQRFTAGPGGTGHI--P-AGYTPWVPTQYVMPAPHMSQ 300
             P +I   R       T +I  P + Y    P+ ++ P P++ Q
Sbjct:   274 PYSIATNRMITQTSITPYIASPVSAYQVQSPS-WMQPQPYILQ 315


>UNIPROTKB|B4DN88 [details] [associations]
            symbol:RBMS1 "RNA-binding motif,
            single-stranded-interacting protein 1" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:AC092153 HOGENOM:HOG000008467 HOVERGEN:HBG053108 OMA:THVQTAA
            EMBL:AC104598 EMBL:AC131754 UniGene:Hs.470412 HGNC:HGNC:9907
            ChiTaRS:RBMS1 EMBL:AC133105 EMBL:AK297812 IPI:IPI00102991
            SMR:B4DN88 STRING:B4DN88 Ensembl:ENST00000392753 UCSC:uc002ubi.4
            Uniprot:B4DN88
        Length = 419

 Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
 Identities = 130/238 (54%), Positives = 161/238 (67%)

Query:    35 PITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDK 94
             P TT++  +N S  + +G +QLSKTNLYIRGL   TTD+DL+ +C  YG I+STKAILDK
Sbjct:    39 PSTTSS-NNNSSSSSNSGWDQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDK 97

Query:    95 TTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDL 154
             TTNKC+GYGFVDF+S   A  AV AL+  G+ AQMA+QQEQDPTNLYI+NLPL+  E +L
Sbjct:    98 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQEL 157

Query:   155 ESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGS---TLPGSK---E 208
             E++L  +  V+STRILRD++ TS+GVGFAR+ES +KC+ +I  FNG    T PG     E
Sbjct:   158 ENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 217

Query:   209 PLLVKFADSGLKKRGAGAGGPNIYRGPGAEVRLWGRDS-ADSQLAYEHPMTPIPATIQ 265
             PLL KFAD G KKR      PN Y   G   R W R+  A   L Y+    P  A IQ
Sbjct:   218 PLLCKFADGGQKKRQ----NPNKYIPNG---RPWHREGEAGMTLTYD----PTTAAIQ 264


>RGD|1307777 [details] [associations]
            symbol:Rbms1 "RNA binding motif, single stranded interacting
            protein 1" species:10116 "Rattus norvegicus" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            RGD:1307777 GO:GO:0005634 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
            Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00630000089747
            HSSP:P29558 CTD:5937 eggNOG:NOG320163 HOGENOM:HOG000008467
            HOVERGEN:HBG053108 OMA:THVQTAA EMBL:BC087094 IPI:IPI00373620
            RefSeq:NP_001012184.1 UniGene:Rn.98522 ProteinModelPortal:Q5PQP1
            SMR:Q5PQP1 PRIDE:Q5PQP1 Ensembl:ENSRNOT00000011682 GeneID:362138
            KEGG:rno:362138 UCSC:RGD:1307777 InParanoid:Q5PQP1 NextBio:678788
            ArrayExpress:Q5PQP1 Genevestigator:Q5PQP1 Uniprot:Q5PQP1
        Length = 403

 Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
 Identities = 138/284 (48%), Positives = 179/284 (63%)

Query:    35 PITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDK 94
             P TT++  +N S  + +G +QLSKTNLYIRGL  +TTD+DL+ +C  YG I+STKAILDK
Sbjct:    39 PSTTSS-NNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDK 97

Query:    95 TTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDL 154
              TNKC+GYGFVDF+S   A  AV AL+  G+ AQMA+QQEQDPTNLYI+NLPL+  E +L
Sbjct:    98 ATNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQEL 157

Query:   155 ESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGS---TLPGSK---E 208
             E++L  +  V+STR+LRD++ TS+GVGFAR+ES +KC+ +I  FNG    T PG     E
Sbjct:   158 ENMLKPFGQVISTRVLRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 217

Query:   209 PLLVKFADSGLKKRGAGAGGPNIYRGPGAEVRLWGRDS-ADSQLAYEHPMT--------P 259
             PLL KFAD G KKR      PN Y   G   R W R+  A   L Y+ P T        P
Sbjct:   218 PLLCKFADGGQKKRQ----NPNKYIPNG---RPWPREGEAGMTLTYD-PTTAALHNGFYP 269

Query:   260 IPATIQYQRFTAGPGGTGHI--P-AGYTPWVPTQYVMPAPHMSQ 300
              P +I   R       T +I  P + Y    P+ ++ P P++ Q
Sbjct:   270 SPYSIATNRMITQTSLTPYIASPVSAYQVQSPS-WMQPQPYILQ 312


>UNIPROTKB|Q5PQP1 [details] [associations]
            symbol:Rbms1 "RNA-binding motif,
            single-stranded-interacting protein 1" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 RGD:1307777 GO:GO:0005634
            GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 Gene3D:3.30.70.330
            GO:GO:0003723 GeneTree:ENSGT00630000089747 HSSP:P29558 CTD:5937
            eggNOG:NOG320163 HOGENOM:HOG000008467 HOVERGEN:HBG053108
            OMA:THVQTAA EMBL:BC087094 IPI:IPI00373620 RefSeq:NP_001012184.1
            UniGene:Rn.98522 ProteinModelPortal:Q5PQP1 SMR:Q5PQP1 PRIDE:Q5PQP1
            Ensembl:ENSRNOT00000011682 GeneID:362138 KEGG:rno:362138
            UCSC:RGD:1307777 InParanoid:Q5PQP1 NextBio:678788
            ArrayExpress:Q5PQP1 Genevestigator:Q5PQP1 Uniprot:Q5PQP1
        Length = 403

 Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
 Identities = 138/284 (48%), Positives = 179/284 (63%)

Query:    35 PITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDK 94
             P TT++  +N S  + +G +QLSKTNLYIRGL  +TTD+DL+ +C  YG I+STKAILDK
Sbjct:    39 PSTTSS-NNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDK 97

Query:    95 TTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDL 154
              TNKC+GYGFVDF+S   A  AV AL+  G+ AQMA+QQEQDPTNLYI+NLPL+  E +L
Sbjct:    98 ATNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQEL 157

Query:   155 ESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGS---TLPGSK---E 208
             E++L  +  V+STR+LRD++ TS+GVGFAR+ES +KC+ +I  FNG    T PG     E
Sbjct:   158 ENMLKPFGQVISTRVLRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 217

Query:   209 PLLVKFADSGLKKRGAGAGGPNIYRGPGAEVRLWGRDS-ADSQLAYEHPMT--------P 259
             PLL KFAD G KKR      PN Y   G   R W R+  A   L Y+ P T        P
Sbjct:   218 PLLCKFADGGQKKRQ----NPNKYIPNG---RPWPREGEAGMTLTYD-PTTAALHNGFYP 269

Query:   260 IPATIQYQRFTAGPGGTGHI--P-AGYTPWVPTQYVMPAPHMSQ 300
              P +I   R       T +I  P + Y    P+ ++ P P++ Q
Sbjct:   270 SPYSIATNRMITQTSLTPYIASPVSAYQVQSPS-WMQPQPYILQ 312


>MGI|MGI:1861774 [details] [associations]
            symbol:Rbms1 "RNA binding motif, single stranded interacting
            protein 1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 MGI:MGI:1861774 GO:GO:0005634
            GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 Gene3D:3.30.70.330
            GO:GO:0003723 GeneTree:ENSGT00630000089747 CTD:5937
            eggNOG:NOG320163 HOGENOM:HOG000008467 HOVERGEN:HBG053108
            OrthoDB:EOG469QV2 ChiTaRS:RBMS1 EMBL:AB026582 EMBL:AB026569
            EMBL:AK135280 EMBL:AK147109 EMBL:AL928581 EMBL:AL929012
            EMBL:BC016501 EMBL:BC056609 EMBL:BC057866 IPI:IPI00127323
            IPI:IPI00462043 IPI:IPI00990210 RefSeq:NP_001135403.1
            RefSeq:NP_064692.2 UniGene:Mm.259667 UniGene:Mm.482338
            ProteinModelPortal:Q91W59 SMR:Q91W59 PhosphoSite:Q91W59
            PaxDb:Q91W59 PRIDE:Q91W59 Ensembl:ENSMUST00000028347
            Ensembl:ENSMUST00000112509 GeneID:56878 KEGG:mmu:56878
            UCSC:uc008jus.2 UCSC:uc008jut.2 InParanoid:Q91W59 NextBio:313461
            Bgee:Q91W59 Genevestigator:Q91W59 GermOnline:ENSMUSG00000026970
            Uniprot:Q91W59
        Length = 403

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 138/284 (48%), Positives = 178/284 (62%)

Query:    35 PITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDK 94
             P TT++  +N S  + +G +QLSKTNLYIRGL  +TTD+DL+ +C  YG I+STKAILDK
Sbjct:    39 PSTTSS-NNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDK 97

Query:    95 TTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDL 154
              TNKC+GYGFVDF+S   A  AV AL+  G+ AQMA+QQEQDPTNLYI+NLPL+  E +L
Sbjct:    98 ATNKCKGYGFVDFDSPAAAQKAVSALKANGVQAQMAKQQEQDPTNLYISNLPLSMDEQEL 157

Query:   155 ESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGS---TLPGSK---E 208
             E++L  +  V+STR+LRD++  S+GVGFAR+ES +KC+ +I  FNG    T PG     E
Sbjct:   158 ENMLKPFGQVISTRVLRDSSGASRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 217

Query:   209 PLLVKFADSGLKKRGAGAGGPNIYRGPGAEVRLWGRDS-ADSQLAYEHPMT--------P 259
             PLL KFAD G KKR      PN Y   G   R W RD  A   L Y+ P T        P
Sbjct:   218 PLLCKFADGGQKKRQ----NPNKYIPNG---RPWPRDGEAGMTLTYD-PTTAALHNGFYP 269

Query:   260 IPATIQYQRFTAGPGGTGHI--P-AGYTPWVPTQYVMPAPHMSQ 300
              P +I   R       T +I  P + Y    P+ ++ P P++ Q
Sbjct:   270 SPYSIATNRMITQTSLTPYIASPVSAYQVQSPS-WMQPQPYILQ 312


>ZFIN|ZDB-GENE-040801-51 [details] [associations]
            symbol:rbms2b "RNA binding motif, single stranded
            interacting protein 2b" species:7955 "Danio rerio" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040801-51 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00630000089747
            eggNOG:NOG320163 HOGENOM:HOG000008467 HOVERGEN:HBG053108
            OrthoDB:EOG469QV2 OMA:GHQMAPP EMBL:BX005414 EMBL:BC076435
            IPI:IPI00482514 RefSeq:NP_001003541.1 UniGene:Dr.33950 SMR:Q6DGB5
            Ensembl:ENSDART00000060059 GeneID:445147 KEGG:dre:445147
            InParanoid:Q6DGB5 NextBio:20831910 Uniprot:Q6DGB5
        Length = 400

 Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
 Identities = 124/222 (55%), Positives = 151/222 (68%)

Query:    44 NGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYG 103
             + S G+ +G +QLSKTNLYIRGL   TTD+DL+ +C  YG I+STKAILDKTTNKC+GYG
Sbjct:    43 SSSNGSSSGGDQLSKTNLYIRGLHPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYG 102

Query:   104 FVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDLESLLAKYVT 163
             FVDF+S   A  AV AL+  G+ AQMA+QQEQDPTNLYI+NLPL+  E +LES+L  +  
Sbjct:   103 FVDFDSPASAQKAVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELESMLKPFSQ 162

Query:   164 VVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGS---TLPG---SKEPLLVKFADS 217
             V+STRILRD N TS+GVGFAR+ES +KC+ +IQ FNG    T PG     EPLL KFAD 
Sbjct:   163 VISTRILRDANGTSRGVGFARMESTEKCEAIIQHFNGKYIKTPPGVAVPTEPLLCKFADG 222

Query:   218 GLKKRGAGAGGPNIYRGPGAEVRLWGRDSADSQLAYEHPMTP 259
             G KKR    G    Y   G   R W R+     +   +  TP
Sbjct:   223 GQKKR-QNQGK---YHQNG---RQWSREGETGGMTLTYDPTP 257


>UNIPROTKB|D4A6H0 [details] [associations]
            symbol:Rbms1 "RNA-binding motif,
            single-stranded-interacting protein 1" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 RGD:1307777 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 OrthoDB:EOG469QV2 IPI:IPI00567364
            ProteinModelPortal:D4A6H0 Ensembl:ENSRNOT00000047180
            ArrayExpress:D4A6H0 Uniprot:D4A6H0
        Length = 411

 Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
 Identities = 126/231 (54%), Positives = 159/231 (68%)

Query:    35 PITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDK 94
             P TT++  +N S  + +G +QLSKTNLYIRGL  +TTD+DL+ +C  YG I+STKAILDK
Sbjct:    31 PSTTSS-NNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDK 89

Query:    95 TTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDL 154
              TNKC+GYGFVDF+S   A  AV AL+  G+ AQMA+QQEQDPTNLYI+NLPL+  E +L
Sbjct:    90 ATNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQEL 149

Query:   155 ESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGS---TLPGSK---E 208
             E++L  +  V+STR+LRD++ TS+GVGFAR+ES +KC+ +I  FNG    T PG     E
Sbjct:   150 ENMLKPFGQVISTRVLRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 209

Query:   209 PLLVKFADSGLKKRGAGAGGPNIYRGPGAEVRLWGRDS-ADSQLAYEHPMT 258
             PLL KFAD G KKR      PN Y   G   R W R+  A   L Y+ P T
Sbjct:   210 PLLCKFADGGQKKRQ----NPNKYIPNG---RPWPREGEAGMTLTYD-PTT 252


>UNIPROTKB|F8W1T6 [details] [associations]
            symbol:RBMS2 "RNA-binding motif,
            single-stranded-interacting protein 2" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:AC090681 HGNC:HGNC:9909 EMBL:AC097104 IPI:IPI01022509
            ProteinModelPortal:F8W1T6 SMR:F8W1T6 Ensembl:ENST00000552247
            ArrayExpress:F8W1T6 Bgee:F8W1T6 Uniprot:F8W1T6
        Length = 344

 Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
 Identities = 132/276 (47%), Positives = 171/276 (61%)

Query:    35 PITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDK 94
             P + +N   N S G+  G +QLSKTNLYIRGL   TTD+DL+ +C  YG I+STKAILDK
Sbjct:    33 PPSPSNSTPNSSSGS-NGNDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDK 91

Query:    95 TTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDL 154
             TTNKC+GYGFVDF+S   A  AV AL+  G+ AQMA+QQEQDPTNLYI+NLPL+  E +L
Sbjct:    92 TTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQEL 151

Query:   155 ESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGS---TLPG---SKE 208
             E +L  +  V+STRILRD + TS+GVGFAR+ES +KC+ +I  FNG    T PG     +
Sbjct:   152 EGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEKCEAIITHFNGKYIKTPPGVPAPSD 211

Query:   209 PLLVKFADSGLKKR-GAGAGGPNIYRGP-GAEVRLWGRDSADSQLAYEHPMTPIPATIQY 266
             PLL KFAD G KKR   G    N    P  A++ +    + D   A ++   P P  I  
Sbjct:   212 PLLCKFADGGPKKRQNQGKFVQNGRAWPRNADMGVMAL-TYDPTTALQNGFYPAPYNITP 270

Query:   267 QRFTAGPGGTGHI--PAGYTPWVPTQYVMPAPHMSQ 300
              R  A    + ++  P     ++PT   M   ++SQ
Sbjct:   271 NRMLAQSALSPYLSSPVSSYQYMPTAAAMQGAYISQ 306


>UNIPROTKB|F1RPR6 [details] [associations]
            symbol:RBMS1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GeneTree:ENSGT00630000089747 OMA:THVQTAA
            EMBL:CU914319 Ensembl:ENSSSCT00000017300 Uniprot:F1RPR6
        Length = 375

 Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
 Identities = 139/285 (48%), Positives = 181/285 (63%)

Query:    35 PITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDK 94
             P TT++  +N S  + +G +QLSKTNLYIRGL  +TTD+DL+ +C  YG I+STKAILDK
Sbjct:     6 PSTTSS-NNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDK 64

Query:    95 TTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDL 154
             TTNKC+GYGFVDF+S   A  AV AL+  G+ AQMA+QQEQDPTNLYI+NLPL+  E +L
Sbjct:    65 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQEL 124

Query:   155 ESLLAKYVTVVSTRILRDNNNTSKGVGFAR--LESKDKCDQMIQLFNGS---TLPGSK-- 207
             E++L  +  V+STRILRD++ TS+GVGFAR  +ES +KC+ +I  FNG    T PG    
Sbjct:   125 ENMLKPFGQVISTRILRDSSGTSRGVGFARNRMESTEKCEAVIGHFNGKFIKTPPGVSAP 184

Query:   208 -EPLLVKFADSGLKKRGAGAGGPNIYRGPG------AEVRLWGRD-SAD-SQLAYEHPMT 258
              EPLL KFAD G KKR      PN Y   G       EVRL G   + D +  A ++   
Sbjct:   185 TEPLLCKFADGGQKKRQ----NPNKYIPNGRPWHREGEVRLAGMTLTYDPTTAAIQNGFY 240

Query:   259 PIPATIQYQRFTAGPGGTGHI--P-AGYTPWVPTQYVMPAPHMSQ 300
             P P +I   R       T +I  P + Y    P+ ++ P P++ Q
Sbjct:   241 PSPYSIATNRMITQTSITPYIASPVSAYQVQSPS-WMQPQPYILQ 284


>UNIPROTKB|E1C5J3 [details] [associations]
            symbol:RBMS1 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            GeneTree:ENSGT00630000089747 OMA:THVQTAA EMBL:AADN02058669
            EMBL:AADN02058670 EMBL:AADN02058671 EMBL:AADN02058672
            EMBL:AADN02058673 IPI:IPI00680409 ProteinModelPortal:E1C5J3
            Ensembl:ENSGALT00000033119 ArrayExpress:E1C5J3 Uniprot:E1C5J3
        Length = 395

 Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
 Identities = 136/284 (47%), Positives = 176/284 (61%)

Query:    35 PITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDK 94
             P TT++  +N S  + +G +QLSKTNLYIR L  +TTD+DL+ +C  YG I+STKAILDK
Sbjct:    31 PSTTSS-NNNSSSSSNSGWDQLSKTNLYIRALPPNTTDQDLVKLCQPYGKIVSTKAILDK 89

Query:    95 TTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDL 154
             TTNKC+GYGFVDF+S   A  AV AL+  G+ AQMA+QQEQDPTNLYI+NLPL+  E +L
Sbjct:    90 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQEL 149

Query:   155 ESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTL--PGS----KE 208
             E++L  +  V+STRILRD++ TS+GVGFAR+ES +KC+ +I  FNG  +  P       E
Sbjct:   150 ENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIAHFNGKFIKTPAGVSVPAE 209

Query:   209 PLLVKFADSGLKKRGAGAGGPNIYRGPGAEVRLWGRDS-ADSQLAYEHPMT--------P 259
             PLL KFAD G KKR       N Y   G   R W R+  A   L Y+ P T        P
Sbjct:   210 PLLCKFADGGQKKRQ----NQNKYIQNG---RAWHREGEAGMTLTYD-PTTAALQNGFYP 261

Query:   260 IPATIQYQRFTAGPGGTGHI--PAG-YTPWVPTQYVMPAPHMSQ 300
              P +I   R       T +I  P   Y    P+ ++ P P++ Q
Sbjct:   262 SPYSITANRMITQTSITPYIASPVSTYQVQSPS-WMQPQPYIMQ 304


>UNIPROTKB|O73664 [details] [associations]
            symbol:RBMS1 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            HSSP:P26378 GeneTree:ENSGT00630000089747 CTD:5937 eggNOG:NOG320163
            HOGENOM:HOG000008467 HOVERGEN:HBG053108 EMBL:AADN02058669
            EMBL:AADN02058670 EMBL:AADN02058671 EMBL:AADN02058672
            EMBL:AADN02058673 EMBL:AB009975 IPI:IPI00586219 RefSeq:NP_990355.1
            UniGene:Gga.4540 SMR:O73664 Ensembl:ENSGALT00000018146
            GeneID:395880 KEGG:gga:395880 NextBio:20815947 Uniprot:O73664
        Length = 373

 Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
 Identities = 133/280 (47%), Positives = 176/280 (62%)

Query:    35 PITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDK 94
             P TT++  +N S  + +G +QLSKTNLYIR L  +TTD+DL+ +C  YG I+STKAILDK
Sbjct:     6 PSTTSS-NNNSSSSSNSGWDQLSKTNLYIRALPPNTTDQDLVKLCQPYGKIVSTKAILDK 64

Query:    95 TTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDL 154
             TTNKC+GYGFVDF+S   A  AV AL+  G+ AQMA+QQEQDPTNLYI+NLPL+  E +L
Sbjct:    65 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQEL 124

Query:   155 ESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTL--PGS----KE 208
             E++L  +  V+STRILRD++ TS+GVGFAR+ES +KC+ +I  FNG  +  P       E
Sbjct:   125 ENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIAHFNGKFIKTPAGVSVPAE 184

Query:   209 PLLVKFADSGLKKR---GAGAGGPNIYRGPGAEVRLWGRD-SAD-SQLAYEHPMTPIPAT 263
             PLL KFAD G KKR            +   G EVRL G   + D +  A ++   P P +
Sbjct:   185 PLLCKFADGGQKKRQNQNKYIQNGRAWHREG-EVRLAGMTLTYDPTTAALQNGFYPSPYS 243

Query:   264 IQYQRFTAGPGGTGHI--PAG-YTPWVPTQYVMPAPHMSQ 300
             I   R       T +I  P   Y    P+ ++ P P++ Q
Sbjct:   244 ITANRMITQTSITPYIASPVSTYQVQSPS-WMQPQPYIMQ 282


>UNIPROTKB|Q15434 [details] [associations]
            symbol:RBMS2 "RNA-binding motif,
            single-stranded-interacting protein 2" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0006396 "RNA processing" evidence=TAS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            GO:GO:0006396 eggNOG:NOG320163 HOGENOM:HOG000008467
            HOVERGEN:HBG053108 OrthoDB:EOG469QV2 CTD:5939 OMA:SQQMAPP
            EMBL:D28483 EMBL:BC027863 EMBL:BC072679 IPI:IPI00003706 PIR:S47660
            RefSeq:NP_002889.1 UniGene:Hs.505729 UniGene:Hs.683360 PDB:1X4E
            PDBsum:1X4E ProteinModelPortal:Q15434 SMR:Q15434 IntAct:Q15434
            STRING:Q15434 PhosphoSite:Q15434 DMDM:55976301 PRIDE:Q15434
            Ensembl:ENST00000262031 GeneID:5939 KEGG:hsa:5939 UCSC:uc001sln.2
            GeneCards:GC12P056915 HGNC:HGNC:9909 HPA:HPA039225 MIM:602387
            neXtProt:NX_Q15434 PharmGKB:PA34275 InParanoid:Q15434
            PhylomeDB:Q15434 EvolutionaryTrace:Q15434 GenomeRNAi:5939
            NextBio:23154 ArrayExpress:Q15434 Bgee:Q15434 CleanEx:HS_RBMS2
            Genevestigator:Q15434 GermOnline:ENSG00000076067 Uniprot:Q15434
        Length = 407

 Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
 Identities = 115/194 (59%), Positives = 141/194 (72%)

Query:    35 PITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDK 94
             P + +N   N S G+  G +QLSKTNLYIRGL   TTD+DL+ +C  YG I+STKAILDK
Sbjct:    33 PPSPSNSTPNSSSGS-NGNDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDK 91

Query:    95 TTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDL 154
             TTNKC+GYGFVDF+S   A  AV AL+  G+ AQMA+QQEQDPTNLYI+NLPL+  E +L
Sbjct:    92 TTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQEL 151

Query:   155 ESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGS---TLPG---SKE 208
             E +L  +  V+STRILRD + TS+GVGFAR+ES +KC+ +I  FNG    T PG     +
Sbjct:   152 EGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEKCEAIITHFNGKYIKTPPGVPAPSD 211

Query:   209 PLLVKFADSGLKKR 222
             PLL KFAD G KKR
Sbjct:   212 PLLCKFADGGPKKR 225


>UNIPROTKB|Q3ZC34 [details] [associations]
            symbol:RBMS2 "RNA-binding motif,
            single-stranded-interacting protein 2" species:9913 "Bos taurus"
            [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            GeneTree:ENSGT00630000089747 eggNOG:NOG320163 HOGENOM:HOG000008467
            HOVERGEN:HBG053108 OrthoDB:EOG469QV2 EMBL:BC102935 IPI:IPI00706755
            RefSeq:NP_001029537.1 UniGene:Bt.87430 HSSP:Q15434
            ProteinModelPortal:Q3ZC34 SMR:Q3ZC34 PRIDE:Q3ZC34
            Ensembl:ENSBTAT00000023705 GeneID:509798 KEGG:bta:509798 CTD:5939
            InParanoid:Q3ZC34 OMA:SQQMAPP NextBio:20869135 Uniprot:Q3ZC34
        Length = 407

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 124/234 (52%), Positives = 154/234 (65%)

Query:    35 PITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDK 94
             P + ++   N S G+ T  +QLSKTNLYIRGL   TTD+DL+ +C  YG I+STKAILDK
Sbjct:    33 PPSPSSSTPNSSSGS-TAHDQLSKTNLYIRGLQPSTTDQDLVKLCQSYGKIVSTKAILDK 91

Query:    95 TTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDL 154
             TTNKC+GYGFVDF+S   A  AV AL+  G+ AQMA+QQEQDPTNLYI+NLPL+  E +L
Sbjct:    92 TTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQEL 151

Query:   155 ESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGS---TLPG---SKE 208
             E +L  +  V+STRILRD + TS+GVGFAR+ES +KC+ +I  FNG    T PG     +
Sbjct:   152 EGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEKCEAIITHFNGKYIKTPPGVPAPSD 211

Query:   209 PLLVKFADSGLKKRGAGAGGPNIYRGPGAEVRLWGR--DSADSQLAYEHPMTPI 260
             PLL KFAD G KKR     G  +  G     R W R  D     L Y+ P T +
Sbjct:   212 PLLCKFADGGPKKRQNQ--GKFVQNG-----RAWPRNGDMGGMALTYD-PSTAL 257


>UNIPROTKB|E2RA90 [details] [associations]
            symbol:RBMS3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0043231 "intracellular membrane-bounded
            organelle" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0043231 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00630000089747
            OMA:QQMTVET EMBL:AAEX03013537 EMBL:AAEX03013538 EMBL:AAEX03013539
            Ensembl:ENSCAFT00000008829 Uniprot:E2RA90
        Length = 437

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 131/276 (47%), Positives = 163/276 (59%)

Query:    35 PITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDK 94
             P  + N   N S    +G EQLSKTNLYIRGL   TTD+DLI +C  YG I+STKAILDK
Sbjct:    38 PSPSTNSSSNNSSSNSSG-EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDK 96

Query:    95 TTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDL 154
              TN+C+GYGFVDF+S   A  AV +L+  G+ AQMA+QQEQDPTNLYI+NLP++  E +L
Sbjct:    97 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQEL 156

Query:   155 ESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTL------PGSKE 208
             E++L  +  V+STRILRD N  S+GVGFAR+ES +KC+ +IQ FNG  L      P   E
Sbjct:   157 ENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSE 216

Query:   209 PLLVKFADSGLKKRGAGA-----GGPNIYRGPGAEVRLWGRDSADSQLAYEHPMT----- 258
             PLL KFAD G KKR   +     G P    G       +   +A     Y  P +     
Sbjct:   217 PLLCKFADGGQKKRQNQSKYTQNGRPWPREGEAGMALTYDPTAAIQNGFYSSPYSIATNR 276

Query:   259 PIPATIQYQRFTAGPGGTGHIPAGYTPWVP-TQYVM 293
              IP T       A P  T  + +  T W+P   YVM
Sbjct:   277 MIPQTSITPFIAASPVSTYQVQS--TSWMPHPPYVM 310


>UNIPROTKB|C9JIJ9 [details] [associations]
            symbol:RBMS3 "RNA-binding motif,
            single-stranded-interacting protein 3" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0043231 "intracellular membrane-bounded
            organelle" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0043231 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 HOGENOM:HOG000008467 EMBL:AC012262 EMBL:AC021068
            EMBL:AC092795 EMBL:AC092796 EMBL:AC097633 EMBL:AC098650
            EMBL:AC099048 HGNC:HGNC:13427 OrthoDB:EOG4KKZ35 ChiTaRS:RBMS3
            IPI:IPI00927842 ProteinModelPortal:C9JIJ9 SMR:C9JIJ9 STRING:C9JIJ9
            PRIDE:C9JIJ9 Ensembl:ENST00000434693 ArrayExpress:C9JIJ9
            Bgee:C9JIJ9 Uniprot:C9JIJ9
        Length = 436

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 131/276 (47%), Positives = 163/276 (59%)

Query:    35 PITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDK 94
             P  + N   N S    +G EQLSKTNLYIRGL   TTD+DLI +C  YG I+STKAILDK
Sbjct:    37 PSPSTNSSSNNSSNNSSG-EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDK 95

Query:    95 TTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDL 154
              TN+C+GYGFVDF+S   A  AV +L+  G+ AQMA+QQEQDPTNLYI+NLP++  E +L
Sbjct:    96 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQEL 155

Query:   155 ESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTL------PGSKE 208
             E++L  +  V+STRILRD N  S+GVGFAR+ES +KC+ +IQ FNG  L      P   E
Sbjct:   156 ENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSE 215

Query:   209 PLLVKFADSGLKKRGAGA-----GGPNIYRGPGAEVRLWGRDSADSQLAYEHPMT----- 258
             PLL KFAD G KKR   +     G P    G       +   +A     Y  P +     
Sbjct:   216 PLLCKFADGGQKKRQNQSKYTQNGRPWPREGEAGMALTYDPTAAIQNGFYSSPYSIATNR 275

Query:   259 PIPATIQYQRFTAGPGGTGHIPAGYTPWVP-TQYVM 293
              IP T       A P  T  + +  T W+P   YVM
Sbjct:   276 MIPQTSITPFIAASPVSTYQVQS--TSWMPHPPYVM 309


>UNIPROTKB|Q6XE24 [details] [associations]
            symbol:RBMS3 "RNA-binding motif,
            single-stranded-interacting protein 3" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0043231 "intracellular membrane-bounded organelle"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0043231 GO:GO:0005737 GO:GO:0000166
            EMBL:CH471055 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG320163
            HOGENOM:HOG000008467 HOVERGEN:HBG053108 HSSP:Q15434 EMBL:AF023259
            EMBL:AY236871 EMBL:AY236872 EMBL:AK292789 EMBL:AC012262
            EMBL:AC021068 EMBL:AC092795 EMBL:AC092796 EMBL:AC097633
            EMBL:AC098650 EMBL:AC099048 EMBL:BC117315 EMBL:BC143521
            IPI:IPI00298424 IPI:IPI00472404 IPI:IPI00827856 IPI:IPI00985081
            RefSeq:NP_001003792.1 RefSeq:NP_001003793.1 RefSeq:NP_001171182.1
            RefSeq:NP_001171183.1 RefSeq:NP_055298.2 UniGene:Hs.221436
            ProteinModelPortal:Q6XE24 SMR:Q6XE24 STRING:Q6XE24
            PhosphoSite:Q6XE24 DMDM:74762382 PaxDb:Q6XE24 PRIDE:Q6XE24
            Ensembl:ENST00000273139 Ensembl:ENST00000383766
            Ensembl:ENST00000383767 Ensembl:ENST00000452462
            Ensembl:ENST00000456853 GeneID:27303 KEGG:hsa:27303 UCSC:uc003cek.3
            UCSC:uc003cel.3 UCSC:uc003cem.3 UCSC:uc010hfq.3 CTD:27303
            GeneCards:GC03P029298 HGNC:HGNC:13427 HPA:HPA034719 MIM:605786
            neXtProt:NX_Q6XE24 PharmGKB:PA34276 InParanoid:Q6XE24 OMA:QQMTVET
            OrthoDB:EOG4KKZ35 ChiTaRS:RBMS3 GenomeRNAi:27303 NextBio:50293
            ArrayExpress:Q6XE24 Bgee:Q6XE24 CleanEx:HS_RBMS3
            Genevestigator:Q6XE24 Uniprot:Q6XE24
        Length = 437

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 131/276 (47%), Positives = 163/276 (59%)

Query:    35 PITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDK 94
             P  + N   N S    +G EQLSKTNLYIRGL   TTD+DLI +C  YG I+STKAILDK
Sbjct:    38 PSPSTNSSSNNSSNNSSG-EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDK 96

Query:    95 TTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDL 154
              TN+C+GYGFVDF+S   A  AV +L+  G+ AQMA+QQEQDPTNLYI+NLP++  E +L
Sbjct:    97 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQEL 156

Query:   155 ESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTL------PGSKE 208
             E++L  +  V+STRILRD N  S+GVGFAR+ES +KC+ +IQ FNG  L      P   E
Sbjct:   157 ENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSE 216

Query:   209 PLLVKFADSGLKKRGAGA-----GGPNIYRGPGAEVRLWGRDSADSQLAYEHPMT----- 258
             PLL KFAD G KKR   +     G P    G       +   +A     Y  P +     
Sbjct:   217 PLLCKFADGGQKKRQNQSKYTQNGRPWPREGEAGMALTYDPTAAIQNGFYSSPYSIATNR 276

Query:   259 PIPATIQYQRFTAGPGGTGHIPAGYTPWVP-TQYVM 293
              IP T       A P  T  + +  T W+P   YVM
Sbjct:   277 MIPQTSITPFIAASPVSTYQVQS--TSWMPHPPYVM 310


>UNIPROTKB|E1BPT6 [details] [associations]
            symbol:RBMS3 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0043231 "intracellular membrane-bounded organelle"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0043231 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00630000089747
            OMA:QQMTVET EMBL:DAAA02053512 EMBL:DAAA02053513 EMBL:DAAA02053514
            EMBL:DAAA02053515 EMBL:DAAA02053516 EMBL:DAAA02053517
            EMBL:DAAA02053518 EMBL:DAAA02053519 EMBL:DAAA02053520
            EMBL:DAAA02053521 EMBL:DAAA02053522 EMBL:DAAA02053523
            IPI:IPI00711139 Ensembl:ENSBTAT00000061510 Uniprot:E1BPT6
        Length = 437

 Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
 Identities = 131/276 (47%), Positives = 163/276 (59%)

Query:    35 PITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDK 94
             P  + N   N S    +G EQLSKTNLYIRGL   TTD+DLI +C  YG I+STKAILDK
Sbjct:    38 PSPSTNSSSNHSSSNSSG-EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDK 96

Query:    95 TTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDL 154
              TN+C+GYGFVDF+S   A  AV +L+  G+ AQMA+QQEQDPTNLYI+NLP++  E +L
Sbjct:    97 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQEL 156

Query:   155 ESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTL------PGSKE 208
             E++L  +  V+STRILRD N  S+GVGFAR+ES +KC+ +IQ FNG  L      P   E
Sbjct:   157 ENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSE 216

Query:   209 PLLVKFADSGLKKRGAGA-----GGPNIYRGPGAEVRLWGRDSADSQLAYEHPMT----- 258
             PLL KFAD G KKR   +     G P    G       +   +A     Y  P +     
Sbjct:   217 PLLCKFADGGQKKRQNQSKYTQNGRPWPREGEAGMALTYDPTAAIQNGFYSSPYSIATNR 276

Query:   259 PIPATIQYQRFTAGPGGTGHIPAGYTPWVP-TQYVM 293
              IP T       A P  T  + +  T W+P   YVM
Sbjct:   277 MIPQTSITPFIAASPVSTYQVQS--TSWMPHPPYVM 310


>UNIPROTKB|C9J9B2 [details] [associations]
            symbol:RBMS3 "RNA-binding motif,
            single-stranded-interacting protein 3" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            HOGENOM:HOG000008467 EMBL:AC012262 EMBL:AC021068 EMBL:AC092795
            EMBL:AC092796 EMBL:AC097633 EMBL:AC098650 EMBL:AC099048
            HGNC:HGNC:13427 ChiTaRS:RBMS3 IPI:IPI00924610
            ProteinModelPortal:C9J9B2 SMR:C9J9B2 STRING:C9J9B2
            Ensembl:ENST00000445033 ArrayExpress:C9J9B2 Bgee:C9J9B2
            Uniprot:C9J9B2
        Length = 264

 Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
 Identities = 113/194 (58%), Positives = 138/194 (71%)

Query:    35 PITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDK 94
             P  + N   N S    +G EQLSKTNLYIRGL   TTD+DLI +C  YG I+STKAILDK
Sbjct:    38 PSPSTNSSSNNSSNNSSG-EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDK 96

Query:    95 TTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDL 154
              TN+C+GYGFVDF+S   A  AV +L+  G+ AQMA+QQEQDPTNLYI+NLP++  E +L
Sbjct:    97 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQEL 156

Query:   155 ESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTL------PGSKE 208
             E++L  +  V+STRILRD N  S+GVGFAR+ES +KC+ +IQ FNG  L      P   E
Sbjct:   157 ENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSE 216

Query:   209 PLLVKFADSGLKKR 222
             PLL KFAD G KKR
Sbjct:   217 PLLCKFADGGQKKR 230


>UNIPROTKB|J3QT21 [details] [associations]
            symbol:RBMS3 "RNA-binding motif,
            single-stranded-interacting protein 3" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:AC012262 EMBL:AC021068 EMBL:AC092795 EMBL:AC092796
            EMBL:AC097633 EMBL:AC098650 EMBL:AC099048 HGNC:HGNC:13427
            ChiTaRS:RBMS3 ProteinModelPortal:J3QT21 Ensembl:ENST00000396583
            Uniprot:J3QT21
        Length = 434

 Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
 Identities = 113/194 (58%), Positives = 138/194 (71%)

Query:    35 PITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDK 94
             P  + N   N S    +G EQLSKTNLYIRGL   TTD+DLI +C  YG I+STKAILDK
Sbjct:    38 PSPSTNSSSNNSSNNSSG-EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDK 96

Query:    95 TTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDL 154
              TN+C+GYGFVDF+S   A  AV +L+  G+ AQMA+QQEQDPTNLYI+NLP++  E +L
Sbjct:    97 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQEL 156

Query:   155 ESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTL------PGSKE 208
             E++L  +  V+STRILRD N  S+GVGFAR+ES +KC+ +IQ FNG  L      P   E
Sbjct:   157 ENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSE 216

Query:   209 PLLVKFADSGLKKR 222
             PLL KFAD G KKR
Sbjct:   217 PLLCKFADGGQKKR 230


>UNIPROTKB|F1P990 [details] [associations]
            symbol:RBMS2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00630000089747 CTD:5939 OMA:SQQMAPP EMBL:AAEX03006927
            RefSeq:XP_538236.2 ProteinModelPortal:F1P990
            Ensembl:ENSCAFT00000000217 GeneID:481115 KEGG:cfa:481115
            Uniprot:F1P990
        Length = 407

 Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
 Identities = 127/262 (48%), Positives = 162/262 (61%)

Query:    35 PITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDK 94
             P + ++   N S G+  G +QLSKTNLYIRGL   TTD+DL+ +C  YG I+STKAILDK
Sbjct:    33 PPSPSSSTPNSSSGS-NGNDQLSKTNLYIRGLQPGTTDQDLVKLCQSYGKIVSTKAILDK 91

Query:    95 TTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDL 154
             +TNKC+GYGFVDF+S   A  AV AL+  G+ AQMA+QQEQDPTNLYI+NLPL+  E +L
Sbjct:    92 STNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQEL 151

Query:   155 ESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTL------PGSKE 208
             E +L  +  V+STRILRD + TS+GVGFAR+ES +KC+ +I  FNG  +      P   +
Sbjct:   152 EGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEKCEAIITHFNGKYIKTPAGVPAPSD 211

Query:   209 PLLVKFADSGLKKRGAGAGGPNIYRGPGAEVRLWGR--DSADSQLAYEHPMT-------P 259
             PLL KFAD G KKR     G  +  G     R W R  D     L Y+ P T       P
Sbjct:   212 PLLCKFADGGPKKRQNQ--GKYVQNG-----RAWPRNGDMGGMALTYD-PTTALQNGFYP 263

Query:   260 IPATIQYQRFTAGPGGTGHIPA 281
              P  I   R  A    + ++P+
Sbjct:   264 APYNITPNRMLAQSALSPYLPS 285


>UNIPROTKB|F1SLB3 [details] [associations]
            symbol:RBMS2 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GeneTree:ENSGT00630000089747 EMBL:CU633731
            EMBL:CU655980 Ensembl:ENSSSCT00000000434 OMA:GHQMAPP
            ArrayExpress:F1SLB3 Uniprot:F1SLB3
        Length = 281

 Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
 Identities = 114/194 (58%), Positives = 140/194 (72%)

Query:    35 PITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDK 94
             P + +N   N S G+    +QLSKTNLYIRGL   TTD+DL+ +C  YG I+STKAILDK
Sbjct:     3 PPSPSNSTPNSSNGSNVN-DQLSKTNLYIRGLQPGTTDQDLVKLCQSYGKIVSTKAILDK 61

Query:    95 TTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDL 154
             TTNKC+GYGFVDF+S   A  AV AL+  G+ AQMA+QQEQDPTNLYI+NLPL+  E +L
Sbjct:    62 TTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQEL 121

Query:   155 ESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGS---TLPG---SKE 208
             E +L  +  V+STRILRD + TS+GVGFAR+ES +KC+ +I  FNG    T PG     +
Sbjct:   122 EGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEKCEAIITHFNGKYIKTPPGVPAPSD 181

Query:   209 PLLVKFADSGLKKR 222
             PLL KFAD G KKR
Sbjct:   182 PLLCKFADGGPKKR 195


>MGI|MGI:1861776 [details] [associations]
            symbol:Rbms2 "RNA binding motif, single stranded interacting
            protein 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1861776 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00630000089747
            eggNOG:NOG320163 HOGENOM:HOG000008467 HOVERGEN:HBG053108
            OrthoDB:EOG469QV2 CTD:5939 OMA:SQQMAPP EMBL:BC021627 EMBL:AK054482
            IPI:IPI00121520 RefSeq:NP_001034169.1 RefSeq:NP_062685.2
            UniGene:Mm.42247 ProteinModelPortal:Q8VC70 SMR:Q8VC70 STRING:Q8VC70
            PhosphoSite:Q8VC70 PRIDE:Q8VC70 Ensembl:ENSMUST00000092033
            GeneID:56516 KEGG:mmu:56516 UCSC:uc007hlm.1 InParanoid:Q8VC70
            ChiTaRS:RBMS2 NextBio:312832 Bgee:Q8VC70 Genevestigator:Q8VC70
            GermOnline:ENSMUSG00000040043 Uniprot:Q8VC70
        Length = 383

 Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
 Identities = 128/263 (48%), Positives = 163/263 (61%)

Query:    37 TTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTT 96
             +T N    G  G+  G +QLSKTNLYIRGL   TTD+DL+ +C  YG I+STKAILDKTT
Sbjct:    37 STPNSSGGGGGGSG-GNDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTT 95

Query:    97 NKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDLES 156
             NKC+GYGFVDF+S   A  AV AL+  G+ AQMA+QQEQDPTNLYI+NLPL+  E +LE 
Sbjct:    96 NKCKGYGFVDFDSPSSAQKAVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEG 155

Query:   157 LLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGS---TLPG---SKEPL 210
             +L  +  V+STRILRD +  S+GVGFAR+ES +KC+ +I  FNG    T PG     +PL
Sbjct:   156 MLKPFGQVISTRILRDTSGASRGVGFARMESTEKCEAIITHFNGKYIKTPPGVAAPSDPL 215

Query:   211 LVKFADSGLKKRGAGAGGPNIYRGPGAEVRLWGRDSADSQLAYEHPMTPIPATIQYQRFT 270
             L KFAD G KKR +   G  +  G     R W R+     +A  +  T   A +Q   F 
Sbjct:   216 LCKFADGGPKKRQSQ--GRYVQNG-----RAWPRNGDMGGMALTYDPT---AALQ-NGFY 264

Query:   271 AGPGGTGH----IPAGYTPWVPT 289
             A P    H      +   P++P+
Sbjct:   265 AAPYSIAHSRMLAQSALAPYLPS 287


>RGD|1304813 [details] [associations]
            symbol:Rbms2 "RNA binding motif, single stranded interacting
            protein 2" species:10116 "Rattus norvegicus" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 RGD:1304813 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 EMBL:CH474104 GeneTree:ENSGT00630000089747
            eggNOG:NOG320163 HOGENOM:HOG000008467 HOVERGEN:HBG053108 CTD:5939
            OMA:SQQMAPP EMBL:BC097377 IPI:IPI00371268 RefSeq:NP_001020574.1
            UniGene:Rn.162925 SMR:Q4QR81 Ensembl:ENSRNOT00000048848
            GeneID:288771 KEGG:rno:288771 UCSC:RGD:1304813 InParanoid:Q4QR81
            NextBio:628683 Genevestigator:Q4QR81 Uniprot:Q4QR81
        Length = 379

 Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
 Identities = 126/259 (48%), Positives = 159/259 (61%)

Query:    44 NGSPGTPTGP---EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCR 100
             NG+P + +G    +QLSKTNLYIRGL   TTD+DL+ +C  YG I+STKAILDKTTNKC+
Sbjct:    36 NGTPNSSSGSGGNDQLSKTNLYIRGLQPSTTDQDLVKLCQPYGKIVSTKAILDKTTNKCK 95

Query:   101 GYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDLESLLAK 160
             GYGFVDF+S   A  AV AL+  G+ AQMA+QQEQDPTNLYI+NLPL+  E +LE +L  
Sbjct:    96 GYGFVDFDSPSSAQKAVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKP 155

Query:   161 YVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGS---TLPG---SKEPLLVKF 214
             +  V+STRILRD    S+GVGFAR+ES +KC+ +I  FNG    T PG     +PLL KF
Sbjct:   156 FGQVISTRILRDTTGASRGVGFARMESTEKCEAIITHFNGKYIKTPPGVAAPSDPLLCKF 215

Query:   215 ADSGLKKRGAGAGGPNIYRGPGAEVRLWGRDSADSQLAYEHPMTPIPATIQYQRFTAGPG 274
             AD G KKR     G  +  G     R W R+     +A    +T  P T     F   P 
Sbjct:   216 ADGGPKKRQNQ--GKFVQNG-----RAWPRNGDMGGMA----LTYDPTTALQNGFYTAPY 264

Query:   275 GTGH----IPAGYTPWVPT 289
                H      +   P++P+
Sbjct:   265 SLAHSRMLAQSALAPYLPS 283


>UNIPROTKB|D4A988 [details] [associations]
            symbol:Rbms2 "Protein Rbms2" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 RGD:1304813 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 OrthoDB:EOG469QV2 IPI:IPI00567496
            Ensembl:ENSRNOT00000004137 ArrayExpress:D4A988 Uniprot:D4A988
        Length = 352

 Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
 Identities = 126/259 (48%), Positives = 159/259 (61%)

Query:    44 NGSPGTPTGP---EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCR 100
             NG+P + +G    +QLSKTNLYIRGL   TTD+DL+ +C  YG I+STKAILDKTTNKC+
Sbjct:    36 NGTPNSSSGSGGNDQLSKTNLYIRGLQPSTTDQDLVKLCQPYGKIVSTKAILDKTTNKCK 95

Query:   101 GYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDLESLLAK 160
             GYGFVDF+S   A  AV AL+  G+ AQMA+QQEQDPTNLYI+NLPL+  E +LE +L  
Sbjct:    96 GYGFVDFDSPSSAQKAVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKP 155

Query:   161 YVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGS---TLPG---SKEPLLVKF 214
             +  V+STRILRD    S+GVGFAR+ES +KC+ +I  FNG    T PG     +PLL KF
Sbjct:   156 FGQVISTRILRDTTGASRGVGFARMESTEKCEAIITHFNGKYIKTPPGVAAPSDPLLCKF 215

Query:   215 ADSGLKKRGAGAGGPNIYRGPGAEVRLWGRDSADSQLAYEHPMTPIPATIQYQRFTAGPG 274
             AD G KKR     G  +  G     R W R+     +A    +T  P T     F   P 
Sbjct:   216 ADGGPKKRQNQ--GKFVQNG-----RAWPRNGDMGGMA----LTYDPTTALQNGFYTAPY 264

Query:   275 GTGH----IPAGYTPWVPT 289
                H      +   P++P+
Sbjct:   265 SLAHSRMLAQSALAPYLPS 283


>UNIPROTKB|E1BTJ0 [details] [associations]
            symbol:RBMS3 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0043231 "intracellular
            membrane-bounded organelle" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0043231 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00630000089747
            OMA:QQMTVET EMBL:AADN02001158 EMBL:AADN02001159 EMBL:AADN02001160
            EMBL:AADN02001161 EMBL:AADN02001162 IPI:IPI00583817
            Ensembl:ENSGALT00000018654 Uniprot:E1BTJ0
        Length = 433

 Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
 Identities = 132/276 (47%), Positives = 166/276 (60%)

Query:    35 PITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDK 94
             P  + N  +N S  + +G EQLSKTNLYIRGL   TTD+DLI +C  YG I+STKAILDK
Sbjct:    38 PSPSTNSSNNSSNNS-SG-EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDK 95

Query:    95 TTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDL 154
              TN+C+GYGFVDF+S   A  AV +L+  G+ AQMA+QQEQDPTNLYI+NLP++  E +L
Sbjct:    96 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPTNLYISNLPVSMDEQEL 155

Query:   155 ESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTL------PGSKE 208
             E++L  +  V+STRILRD N  S+GVGFAR+ES +KC+ +IQ FNG  L      P   E
Sbjct:   156 ENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGLPAPTE 215

Query:   209 PLLVKFADSGLKKRGAGA-----GGPNIYRGPGAEVRLWGRDSADSQLAYEHPMT-P--- 259
             PLL KFAD G KKR   +     G P    G       +   +A     Y  P + P   
Sbjct:   216 PLLCKFADGGQKKRQNQSKYTQNGRPWPREGEAGMALTYDPTAAIQNGFYSSPYSIPTNR 275

Query:   260 -IPATIQYQRFTAGPGGTGHIPAGYTPWVP-TQYVM 293
              IP T       A P  T  + +  T W+P   YVM
Sbjct:   276 MIPQTSITPFIAASPVSTYQVQS--TSWMPHPPYVM 309


>ZFIN|ZDB-GENE-060929-244 [details] [associations]
            symbol:rbms3 "RNA binding motif, single stranded
            interacting protein" species:7955 "Danio rerio" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060929-244
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            GeneTree:ENSGT00630000089747 EMBL:CR626944 EMBL:CR848052
            EMBL:CR848810 IPI:IPI00920287 Ensembl:ENSDART00000125804
            Ensembl:ENSDART00000136719 Uniprot:F1QEI2
        Length = 415

 Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
 Identities = 129/255 (50%), Positives = 157/255 (61%)

Query:    54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYA 113
             EQLSKTNLYIRGL   TTD+DLI +C  YG I+STKAILDK TN+C+GYGFVDF+S   A
Sbjct:    51 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAA 110

Query:   114 LAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN 173
               AV +L+  G+ AQMA+QQEQDPTNLYI+NLP++  E +LE++L  +  V+STRILRD 
Sbjct:   111 QKAVASLKASGVQAQMAKQQEQDPTNLYISNLPVSMDEQELENMLKPFGHVISTRILRDA 170

Query:   174 NNTSKGVGFARLESKDKCDQMIQLFNGSTL------PGSKEPLLVKFADSGLKKRGAGAG 227
             N  S+GVGFAR+ES +KCD +IQ FNG  L      P   EPLL KFAD G KKR + + 
Sbjct:   171 NGVSRGVGFARMESTEKCDVVIQHFNGKFLKTPPGVPAPTEPLLCKFADGGQKKRQSQSK 230

Query:   228 GPNIYRGPGAEVRLWGRDSADSQLAYEHPMTPIPATIQYQRFTAGPGGTGHIPAG----Y 283
              P   R P       G        A ++     P +I   R  A    T  I A     Y
Sbjct:   231 YPQNGR-PWPREGESGMALTYDPTAMQNGFYSSPYSISTNRMIAQTSITPFIAASPVSTY 289

Query:   284 ----TPWVP-TQYVM 293
                 T W+P  QYVM
Sbjct:   290 QVQSTSWMPHQQYVM 304


>MGI|MGI:2444477 [details] [associations]
            symbol:Rbms3 "RNA binding motif, single stranded interacting
            protein" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003674 "molecular_function"
            evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            MGI:MGI:2444477 GO:GO:0043231 GO:GO:0005737 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00630000089747
            eggNOG:NOG320163 HOVERGEN:HBG053108 HSSP:Q15434 CTD:27303
            OMA:QQMTVET OrthoDB:EOG4KKZ35 ChiTaRS:RBMS3 EMBL:AK030478
            EMBL:AK030609 EMBL:AK032938 EMBL:AK033005 EMBL:AK041098
            EMBL:AK046197 EMBL:AK052196 EMBL:BC108402 EMBL:BC117841
            IPI:IPI00346515 IPI:IPI00474248 IPI:IPI00828372 IPI:IPI00828512
            IPI:IPI00828705 IPI:IPI00828757 RefSeq:NP_001165592.1
            RefSeq:NP_001165593.1 RefSeq:NP_001165594.1 RefSeq:NP_001165595.1
            RefSeq:NP_001165597.1 RefSeq:NP_848775.2 UniGene:Mm.326411
            ProteinModelPortal:Q8BWL5 SMR:Q8BWL5 PhosphoSite:Q8BWL5
            PaxDb:Q8BWL5 PRIDE:Q8BWL5 Ensembl:ENSMUST00000044901
            Ensembl:ENSMUST00000068962 Ensembl:ENSMUST00000111772
            Ensembl:ENSMUST00000111773 Ensembl:ENSMUST00000164018
            Ensembl:ENSMUST00000174868 GeneID:207181 KEGG:mmu:207181
            UCSC:uc009ryv.2 UCSC:uc009ryw.2 UCSC:uc009ryx.2 UCSC:uc009ryy.2
            UCSC:uc009ryz.2 UCSC:uc009rza.2 InParanoid:Q8BWL5 NextBio:371875
            Bgee:Q8BWL5 Genevestigator:Q8BWL5 Uniprot:Q8BWL5
        Length = 431

 Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
 Identities = 129/276 (46%), Positives = 163/276 (59%)

Query:    35 PITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDK 94
             P+   +   N S  + +G EQLSKTNLYIRGL   TTD+DLI +C  YG I+STKAILDK
Sbjct:    34 PMAPPSPSTNSSSNS-SG-EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDK 91

Query:    95 TTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDL 154
              TN+C+GYGFVDF+S   A  AV +L+  G+ AQMA+QQEQDPTNLYI+NLP++  E +L
Sbjct:    92 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQEL 151

Query:   155 ESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTL------PGSKE 208
             E++L  +  V+STRILRD N  S+GVGFAR+ES +KC+ +IQ FNG  L      P   E
Sbjct:   152 ENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSE 211

Query:   209 PLLVKFADSGLKKRGAGA-----GGPNIYRGPGAEVRLWGRDSADSQLAYEHPMT----- 258
             PLL KFAD G KKR   +     G P    G       +   +A     Y  P +     
Sbjct:   212 PLLCKFADGGQKKRQGQSKHTQNGRPWPREGEAGMALTYDPTAALQNGFYSSPYSLATNR 271

Query:   259 PIPATIQYQRFTAGPGGTGHIPAGYTPWVP-TQYVM 293
              IP T       A P  T  + +  T W P   Y+M
Sbjct:   272 MIPQTSITPFIAASPVSTYQVQS--TSWTPHLPYIM 305


>RGD|1588240 [details] [associations]
            symbol:Rbms3 "RNA binding motif, single stranded interacting
            protein 3" species:10116 "Rattus norvegicus" [GO:0043231
            "intracellular membrane-bounded organelle" evidence=ISO]
            REFSEQ:XM_002727143 Ncbi:XP_002727189
        Length = 430

 Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 112/194 (57%), Positives = 139/194 (71%)

Query:    35 PITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDK 94
             P+   +   N S  + +G EQLSKTNLYIRGL   TTD+DLI +C  YG I+STKAILDK
Sbjct:    34 PMAPPSPSTNSSSNS-SG-EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDK 91

Query:    95 TTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDL 154
              TN+C+GYGFVDF+S   A  AV +L+  G+ AQMA+QQEQDPTNLYI+NLP++  E +L
Sbjct:    92 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQEL 151

Query:   155 ESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTL------PGSKE 208
             E++L  +  V+STRILRD N  S+GVGFAR+ES +KC+ +IQ FNG  L      P   E
Sbjct:   152 ENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSE 211

Query:   209 PLLVKFADSGLKKR 222
             PLL KFAD G KKR
Sbjct:   212 PLLCKFADGGQKKR 225


>UNIPROTKB|D4A288 [details] [associations]
            symbol:D4A288 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG469QV2
            IPI:IPI00358787 ProteinModelPortal:D4A288
            Ensembl:ENSRNOT00000039637 Uniprot:D4A288
        Length = 291

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 103/192 (53%), Positives = 131/192 (68%)

Query:    44 NGSPGTP--TGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRG 101
             NG+P +   +G +Q+SKTNLYIRGL    TD+DL+ +C  YG I+STKAILDKTTNKC+G
Sbjct:     8 NGAPNSSRSSGNDQMSKTNLYIRGLQPSITDQDLVKLCQPYGKIVSTKAILDKTTNKCKG 67

Query:   102 YGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDLESLLAKY 161
             YGFVDF+S   A  AV AL+  G+ AQMA+QQEQDP NLYI+NLPL+  E   + +L  +
Sbjct:    68 YGFVDFDSPSSAHKAVTALKASGMQAQMAKQQEQDPANLYISNLPLSMDE---QGMLKPF 124

Query:   162 VTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTL---PGSKEP---LLVKFA 215
               V++T ILRD     +GVGFAR+ES +KC+ +I  FNG  +   P S      LL KFA
Sbjct:   125 GQVIATGILRDTTGARRGVGFARMESTEKCEAIITHFNGKYIKDGPWSSSTFCLLLCKFA 184

Query:   216 DSGLKKRGAGAG 227
             D+G  KRG   G
Sbjct:   185 DAG-PKRGQNQG 195


>WB|WBGene00006331 [details] [associations]
            symbol:sup-26 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
            "positive regulation of growth rate" evidence=IMP] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            [GO:0040011 "locomotion" evidence=IMP] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0017148 "negative regulation of translation"
            evidence=IMP] [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
            [GO:0005515 "protein binding" evidence=IPI] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009792 GO:GO:0005737 GO:GO:0040010 GO:GO:0017148
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0003730
            EMBL:Z50874 GeneTree:ENSGT00630000089747 GeneID:175551
            KEGG:cel:CELE_R10E4.2 CTD:175551 RefSeq:NP_001254892.1
            ProteinModelPortal:D5MCR3 SMR:D5MCR3 EnsemblMetazoa:R10E4.2q
            WormBase:R10E4.2q ArrayExpress:D5MCR3 Uniprot:D5MCR3
        Length = 476

 Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
 Identities = 108/186 (58%), Positives = 130/186 (69%)

Query:    42 QHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRG 101
             QH+ S  TP     LS TNLYIRGL  +T D  L  MCS+YG I STKAI+DK TN C+G
Sbjct:   138 QHHDS--TP-----LSSTNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKG 190

Query:   102 YGFVDFESGGYALAAVKALQDKGIHAQMAR--QQEQDPTNLYIANLPLNFKECDLESLLA 159
             YGFVDFES   A AAV  L  +G+ AQMA+  QQEQDPTNLYIANLPL+F E  LE+ L 
Sbjct:   191 YGFVDFESPQAAAAAVDGLNTEGVQAQMAKLQQQEQDPTNLYIANLPLDFTEQMLETELN 250

Query:   160 KYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPG-SKE-P-LLVKFAD 216
             K+  V+STRILR  +N S+GVGFAR++SK+KC+ +I   NG      SKE P LL+K AD
Sbjct:   251 KFGMVISTRILRTPDNQSRGVGFARMDSKEKCEVIISALNGGRFDTMSKEGPALLIKQAD 310

Query:   217 SGLKKR 222
             +G K +
Sbjct:   311 TGRKSK 316


>UNIPROTKB|E7EPF2 [details] [associations]
            symbol:RBMS1 "RNA-binding motif,
            single-stranded-interacting protein 1" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC092153 EMBL:AC104598
            EMBL:AC131754 HGNC:HGNC:9907 ChiTaRS:RBMS1 EMBL:AC133105
            IPI:IPI01011353 ProteinModelPortal:E7EPF2 SMR:E7EPF2
            Ensembl:ENST00000428519 ArrayExpress:E7EPF2 Bgee:E7EPF2
            Uniprot:E7EPF2
        Length = 128

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 77/124 (62%), Positives = 97/124 (78%)

Query:    35 PITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDK 94
             P TT++  +N S  + +G +QLSKTNLYIRGL   TTD+DL+ +C  YG I+STKAILDK
Sbjct:     6 PSTTSS-NNNSSSSSNSGWDQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDK 64

Query:    95 TTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDL 154
             TTNKC+GYGFVDF+S   A  AV AL+  G+ AQMA+QQEQDPTNLYI+NLPL+  E +L
Sbjct:    65 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQEL 124

Query:   155 ESLL 158
             E++L
Sbjct:   125 ENML 128


>POMBASE|SPBC29A10.02 [details] [associations]
            symbol:spo5 "meiotic RNA-binding protein 1"
            species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
            evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
            [GO:0006998 "nuclear envelope organization" evidence=IMP]
            [GO:0007131 "reciprocal meiotic recombination" evidence=IMP]
            [GO:0007135 "meiosis II" evidence=TAS] [GO:0030437 "ascospore
            formation" evidence=IMP] [GO:0031322 "ascospore-type
            prospore-specific spindle pole body remodeling" evidence=IMP]
            [GO:0032120 "ascospore-type prospore membrane assembly"
            evidence=IMP] [GO:0033620 "Mei2 nuclear dot" evidence=IDA]
            [GO:0034504 "protein localization to nucleus" evidence=IMP]
            [GO:0060903 "positive regulation of meiosis I" evidence=IMP]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 PomBase:SPBC29A10.02 GO:GO:0005829 GO:GO:0000166
            EMBL:CU329671 Gene3D:3.30.70.330 GenomeReviews:CU329671_GR
            GO:GO:0003723 GO:GO:0006998 GO:GO:0032120 GO:GO:0007131
            GO:GO:0034504 GO:GO:0031322 GO:GO:0007135 GO:GO:0033620
            eggNOG:NOG320163 EMBL:AB248101 PIR:T40057 RefSeq:NP_596047.1
            ProteinModelPortal:Q2L4W6 STRING:Q2L4W6 EnsemblFungi:SPBC29A10.02.1
            GeneID:2540637 KEGG:spo:SPBC29A10.02 OrthoDB:EOG4V9XZV
            NextBio:20801762 GO:GO:0060903 Uniprot:Q2L4W6
        Length = 567

 Score = 321 (118.1 bits), Expect = 2.8e-28, P = 2.8e-28
 Identities = 70/182 (38%), Positives = 110/182 (60%)

Query:    54 EQLSKT-NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGY 112
             E  S+T N+YIRGL  +T+D++L+   +++G + S+KAI+D  TN C+GYGF  FE    
Sbjct:   290 ESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEKS 349

Query:   113 ALAAVKALQDKGIHAQMARQ---------QEQDPTNLYIANLPLNFKECDLESLLAKYVT 163
             AL  + A+   G     A++         Q+ + TNLYI+NLPL++ E D+ +L  K   
Sbjct:   350 ALICISAMTLCGYQCSFAKESFSARLQSLQDTESTNLYISNLPLHWNESDISTLF-KPSK 408

Query:   164 VVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRG 223
             ++S R+LRD+   S+GVGFAR++ +   + +I  FN   L  +  PL ++FADS  +K+ 
Sbjct:   409 IISNRVLRDSKEQSRGVGFARMQDRKTAEDIINKFNNFVLDPALPPLQIRFADSTDQKKF 468

Query:   224 AG 225
              G
Sbjct:   469 KG 470


>UNIPROTKB|F6W1U9 [details] [associations]
            symbol:RBMS2 "RNA-binding motif,
            single-stranded-interacting protein 2" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC090681 HGNC:HGNC:9909
            EMBL:AC097104 IPI:IPI01022449 ProteinModelPortal:F6W1U9 SMR:F6W1U9
            Ensembl:ENST00000545007 ArrayExpress:F6W1U9 Bgee:F6W1U9
            Uniprot:F6W1U9
        Length = 147

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 58/97 (59%), Positives = 71/97 (73%)

Query:    35 PITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDK 94
             P + +N   N S G+  G +QLSKTNLYIRGL   TTD+DL+ +C  YG I+STKAILDK
Sbjct:    33 PPSPSNSTPNSSSGS-NGNDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDK 91

Query:    95 TTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131
             TTNKC+GYGFVDF+S   A  AV AL+  G+ AQMA+
Sbjct:    92 TTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAK 128


>UNIPROTKB|E1C5D8 [details] [associations]
            symbol:RBMS3 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00630000089747 EMBL:AADN02001158 EMBL:AADN02001159
            EMBL:AADN02001160 EMBL:AADN02001161 EMBL:AADN02001162
            IPI:IPI00820982 ProteinModelPortal:E1C5D8
            Ensembl:ENSGALT00000037692 Uniprot:E1C5D8
        Length = 307

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 78/182 (42%), Positives = 99/182 (54%)

Query:   129 MARQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESK 188
             MA+QQEQDPTNLYI+NLP++  E +LE++L  +  V+STRILRD N  S+GVGFAR+ES 
Sbjct:     1 MAKQQEQDPTNLYISNLPVSMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMEST 60

Query:   189 DKCDQMIQLFNGSTL------PGSKEPLLVKFADSGLKKRGAGA-----GGPNIYRGPGA 237
             +KC+ +IQ FNG  L      P   EPLL KFAD G KKR   +     G P    G   
Sbjct:    61 EKCEVVIQHFNGKYLKTPPGLPAPTEPLLCKFADGGQKKRQNQSKYTQNGRPWPREGEAG 120

Query:   238 EVRLWGRDSADSQLAYEHPMT-P----IPATIQYQRFTAGPGGTGHIPAGYTPWVP-TQY 291
                 +   +A     Y  P + P    IP T       A P  T  + +  T W+P   Y
Sbjct:   121 MALTYDPTAAIQNGFYSSPYSIPTNRMIPQTSITPFIAASPVSTYQVQS--TSWMPHPPY 178

Query:   292 VM 293
             VM
Sbjct:   179 VM 180


>UNIPROTKB|F8VV01 [details] [associations]
            symbol:RBMS2 "RNA-binding motif,
            single-stranded-interacting protein 2" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC090681 HGNC:HGNC:9909
            EMBL:AC097104 IPI:IPI01022795 ProteinModelPortal:F8VV01 SMR:F8VV01
            Ensembl:ENST00000550726 ArrayExpress:F8VV01 Bgee:F8VV01
            Uniprot:F8VV01
        Length = 282

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 59/100 (59%), Positives = 73/100 (73%)

Query:   129 MARQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESK 188
             MA+QQEQDPTNLYI+NLPL+  E +LE +L  +  V+STRILRD + TS+GVGFAR+ES 
Sbjct:     1 MAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMEST 60

Query:   189 DKCDQMIQLFNGS---TLPG---SKEPLLVKFADSGLKKR 222
             +KC+ +I  FNG    T PG     +PLL KFAD G KKR
Sbjct:    61 EKCEAIITHFNGKYIKTPPGVPAPSDPLLCKFADGGPKKR 100


>UNIPROTKB|Q3ZCE2 [details] [associations]
            symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
            Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
            [GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
            [GO:0045727 "positive regulation of translation" evidence=IEA]
            [GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
            "AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
            HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
            OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
            OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
            IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
            STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
            KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
        Length = 326

 Score = 250 (93.1 bits), Expect = 7.9e-24, Sum P(2) = 7.9e-24
 Identities = 57/170 (33%), Positives = 90/170 (52%)

Query:    54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYA 113
             + + +TNL +  L Q+ T  +L ++ S  G + S K I DK      GYGFV++ +   A
Sbjct:    15 DDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDA 74

Query:   114 LAAVKAL-----QDKGIHAQMARQQEQ--DPTNLYIANLPLNFKECDLESLLAKYVTVVS 166
               A+  L     Q K I    AR   +     NLYI+ LP N  + D+E + +++  +++
Sbjct:    75 ERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRNMTQKDVEDMFSRFGRIIN 134

Query:   167 TRILRDNNN-TSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFA 215
             +R+L D     S+GV F R + + + ++ I  FNG   PGS EP+ VKFA
Sbjct:   135 SRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA 184

 Score = 38 (18.4 bits), Expect = 7.9e-24, Sum P(2) = 7.9e-24
 Identities = 13/33 (39%), Positives = 14/33 (42%)

Query:   249 SQLAYEHPMTPI--PATIQYQRFTAGPGGTGHI 279
             SQL Y  P      P   Q QRF   P G  H+
Sbjct:   197 SQL-YHSPARRFGGPVHHQAQRFRFSPMGVDHM 228


>MGI|MGI:1100851 [details] [associations]
            symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
            1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
            "nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
            [GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
            "AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
            binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
            binding" evidence=ISO] [GO:0045727 "positive regulation of
            translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
            evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
            evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
            GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
            HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
            OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
            EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
            UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
            DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
            PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
            KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
            OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
            Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
        Length = 326

 Score = 246 (91.7 bits), Expect = 2.1e-23, Sum P(2) = 2.1e-23
 Identities = 56/170 (32%), Positives = 90/170 (52%)

Query:    54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYA 113
             + + +TNL +  L Q+ T ++L ++ S  G + S K I DK      GYGFV++ +   A
Sbjct:    15 DDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDA 74

Query:   114 LAAVKAL-----QDKGIHAQMARQQEQ--DPTNLYIANLPLNFKECDLESLLAKYVTVVS 166
               A+  L     Q K I    AR   +     NLYI+ LP    + D+E + +++  +++
Sbjct:    75 ERAISTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIIN 134

Query:   167 TRILRDNNN-TSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFA 215
             +R+L D     S+GV F R + + + ++ I  FNG   PGS EP+ VKFA
Sbjct:   135 SRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA 184

 Score = 38 (18.4 bits), Expect = 2.1e-23, Sum P(2) = 2.1e-23
 Identities = 13/33 (39%), Positives = 14/33 (42%)

Query:   249 SQLAYEHPMTPI--PATIQYQRFTAGPGGTGHI 279
             SQL Y  P      P   Q QRF   P G  H+
Sbjct:   197 SQL-YHSPARRFGGPVHHQAQRFRFSPMGVDHM 228


>RGD|1308649 [details] [associations]
            symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
            Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
            binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
            [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
            translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
            evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
            [GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
            [GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
            [GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
            "3'-UTR-mediated mRNA stabilization" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
            HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
            EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
            UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
            Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
            UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
            Uniprot:B5DF91
        Length = 326

 Score = 246 (91.7 bits), Expect = 2.1e-23, Sum P(2) = 2.1e-23
 Identities = 56/170 (32%), Positives = 90/170 (52%)

Query:    54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYA 113
             + + +TNL +  L Q+ T ++L ++ S  G + S K I DK      GYGFV++ +   A
Sbjct:    15 DDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDA 74

Query:   114 LAAVKAL-----QDKGIHAQMARQQEQ--DPTNLYIANLPLNFKECDLESLLAKYVTVVS 166
               A+  L     Q K I    AR   +     NLYI+ LP    + D+E + +++  +++
Sbjct:    75 ERAISTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIIN 134

Query:   167 TRILRDNNN-TSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFA 215
             +R+L D     S+GV F R + + + ++ I  FNG   PGS EP+ VKFA
Sbjct:   135 SRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA 184

 Score = 38 (18.4 bits), Expect = 2.1e-23, Sum P(2) = 2.1e-23
 Identities = 13/33 (39%), Positives = 14/33 (42%)

Query:   249 SQLAYEHPMTPI--PATIQYQRFTAGPGGTGHI 279
             SQL Y  P      P   Q QRF   P G  H+
Sbjct:   197 SQL-YHSPARRFGGPVHHQAQRFRFSPMGVDHM 228


>MGI|MGI:1100887 [details] [associations]
            symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
            Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
            HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
            IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
            ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
            PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
            Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
            InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
            GermOnline:ENSMUSG00000008489 Uniprot:Q60899
        Length = 360

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 85/267 (31%), Positives = 124/267 (46%)

Query:    35 PITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDK 94
             P T NN   N S    +G  + SKTNL +  L Q+ T ++L ++    G I S K + DK
Sbjct:    18 PTTVNN---NCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDK 74

Query:    95 TTNKCRGYGFVDFESGGYALAAVKAL-----QDKGIHAQMARQQEQD--PTNLYIANLPL 147
              T +  GYGFV++     A  A+  L     Q K I    AR         NLY++ LP 
Sbjct:    75 ITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPK 134

Query:   148 NFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGS 206
                + +LE L ++Y  ++++RIL D     S+GVGF R + + + ++ I+  NG   PG+
Sbjct:   135 TMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGA 194

Query:   207 KEPLLVKFADSGLKKRGAGA-----GGPNI-YRGPGAEVRLWGRDSADSQLAYEHPMTPI 260
              EP+ VKFA++  +K            PN  Y GP A+     R      +AY       
Sbjct:   195 TEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKSRFS 254

Query:   261 PATIQYQRFTAGPGGTGHIPAGYTPWV 287
             P TI      AG    GH   G+  +V
Sbjct:   255 PMTIDGMTSLAGINIPGHPGTGWCIFV 281


>FB|FBgn0010263 [details] [associations]
            symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
            melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
            "germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
            "nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
            "oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
            evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
            evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
            HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
            ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
            InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
        Length = 444

 Score = 271 (100.5 bits), Expect = 3.2e-23, P = 3.2e-23
 Identities = 68/194 (35%), Positives = 103/194 (53%)

Query:    37 TTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTT 96
             T NN  +N +       E   KTNL +  L Q  +  ++ ++   +G + S K I DK T
Sbjct:    88 TNNNNNNNATANNNNNNEPDPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVT 147

Query:    97 NKCRGYGFVDF---ESGGYALAAVKAL--QDKGIHAQMARQQEQD--PTNLYIANLPLNF 149
              +  GYGFV++   E    A+ A+  L  Q+K I   +AR   +     NLY++ LP N 
Sbjct:   148 GQSLGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSSESIKGANLYVSGLPKNM 207

Query:   150 KECDLESLLAKYVTVVSTRILRDN------NNTSKGVGFARLESKDKCDQMIQLFNGSTL 203
              + DLESL + Y  ++++RIL DN         SKGVGF R + + + D+ I+  NG+T 
Sbjct:   208 TQSDLESLFSPYGKIITSRILCDNITGEHAAGLSKGVGFIRFDQRFEADRAIKELNGTTP 267

Query:   204 PGSKEPLLVKFADS 217
               S EP+ VKFA++
Sbjct:   268 KNSTEPITVKFANN 281


>UNIPROTKB|F1PSC4 [details] [associations]
            symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
            Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
        Length = 334

 Score = 244 (91.0 bits), Expect = 3.4e-23, Sum P(2) = 3.4e-23
 Identities = 56/170 (32%), Positives = 89/170 (52%)

Query:    54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYA 113
             + + +TNL +  L Q+ T  +L ++ S  G + S K I DK      GYGFV++ +   A
Sbjct:    23 DDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDA 82

Query:   114 LAAVKAL-----QDKGIHAQMARQQEQ--DPTNLYIANLPLNFKECDLESLLAKYVTVVS 166
               A+  L     Q K I    AR   +     NLYI+ LP    + D+E + +++  +++
Sbjct:    83 ERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIIN 142

Query:   167 TRILRDNNN-TSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFA 215
             +R+L D     S+GV F R + + + ++ I  FNG   PGS EP+ VKFA
Sbjct:   143 SRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA 192

 Score = 38 (18.4 bits), Expect = 3.4e-23, Sum P(2) = 3.4e-23
 Identities = 13/33 (39%), Positives = 14/33 (42%)

Query:   249 SQLAYEHPMTPI--PATIQYQRFTAGPGGTGHI 279
             SQL Y  P      P   Q QRF   P G  H+
Sbjct:   205 SQL-YHSPARRFGGPVHHQAQRFRFSPMGVDHM 236


>UNIPROTKB|D3K5N7 [details] [associations]
            symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
            Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
            "3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
            "positive regulation of translation" evidence=IEA] [GO:0019901
            "protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
            GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
            TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
            EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
            ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
            GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
        Length = 326

 Score = 244 (91.0 bits), Expect = 3.4e-23, Sum P(2) = 3.4e-23
 Identities = 57/170 (33%), Positives = 89/170 (52%)

Query:    54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYA 113
             + + +TNL +  L Q+ T ++L ++ S  G I S K I DK      GYGFV++ +   A
Sbjct:    15 DDIGRTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDA 74

Query:   114 LAAVKAL-----QDKGIHAQMARQQEQ--DPTNLYIANLPLNFKECDLESLLAKYVTVVS 166
               A+  L     Q K I    AR   +     NLYI+ LP    + D+E + + +  +++
Sbjct:    75 ERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSPFGRIIN 134

Query:   167 TRILRDNNN-TSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFA 215
             +R+L D     S+GV F R + + + ++ I  FNG   PGS EP+ VKFA
Sbjct:   135 SRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA 184

 Score = 38 (18.4 bits), Expect = 3.4e-23, Sum P(2) = 3.4e-23
 Identities = 13/33 (39%), Positives = 14/33 (42%)

Query:   249 SQLAYEHPMTPI--PATIQYQRFTAGPGGTGHI 279
             SQL Y  P      P   Q QRF   P G  H+
Sbjct:   197 SQL-YHSPARRFGGPVHHQAQRFRFSPMGVDHM 228


>UNIPROTKB|G3N063 [details] [associations]
            symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
            EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
        Length = 388

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 85/267 (31%), Positives = 124/267 (46%)

Query:    35 PITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDK 94
             P T NN   N S    +G  + SKTNL +  L Q+ T ++L ++    G I S K + DK
Sbjct:    47 PTTINN---NCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDK 103

Query:    95 TTNKCRGYGFVDFESGGYALAAVKAL-----QDKGIHAQMARQQEQD--PTNLYIANLPL 147
              T +  GYGFV++     A  A+  L     Q K I    AR         NLY++ LP 
Sbjct:   104 ITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPK 163

Query:   148 NFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGS 206
                + +LE L ++Y  ++++RIL D     S+GVGF R + + + ++ I+  NG   PG+
Sbjct:   164 TMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGA 223

Query:   207 KEPLLVKFADSGLKKRGAGA-----GGPNI-YRGPGAEVRLWGRDSADSQLAYEHPMTPI 260
              EP+ VKFA++  +K            PN  Y GP A+     R      +AY       
Sbjct:   224 TEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKSRFS 283

Query:   261 PATIQYQRFTAGPGGTGHIPAGYTPWV 287
             P TI      AG    GH   G+  +V
Sbjct:   284 PMTIDGMTSLAGINIPGHPGTGWCIFV 310


>UNIPROTKB|E2RI94 [details] [associations]
            symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
            EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
            Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
        Length = 388

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 84/267 (31%), Positives = 125/267 (46%)

Query:    35 PITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDK 94
             P T NN   N S    +G  + SKTNL +  L Q+ T ++L ++    G I S K + DK
Sbjct:    47 PTTINN---NCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDK 103

Query:    95 TTNKCRGYGFVDFESGGYALAAVKAL-----QDKGIHAQMARQQEQD--PTNLYIANLPL 147
              T +  GYGFV++     A  A+  L     Q K I    AR         NLY++ LP 
Sbjct:   104 ITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPK 163

Query:   148 NFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGS 206
                + +LE L ++Y  ++++RIL D     S+GVGF R + + + ++ I+  NG   PG+
Sbjct:   164 TMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGA 223

Query:   207 KEPLLVKFADSGLKKRGAGA-----GGPNIYRGPGAEVRLWGRDSADSQLAYEHPMTPI- 260
              EP+ VKFA++  +K            PN  R PG   +   R   D+ L   + +    
Sbjct:   224 TEPITVKFANNPSQKTNQAILSQLYQSPN-RRYPGPLAQQAQRFRLDNLLNMAYGVKRFS 282

Query:   261 PATIQYQRFTAGPGGTGHIPAGYTPWV 287
             P TI      AG    GH   G+  +V
Sbjct:   283 PMTIDGMTSLAGINIPGHPGTGWCIFV 309


>UNIPROTKB|B1AM49 [details] [associations]
            symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
            UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
            Ensembl:ENST00000359598 Uniprot:B1AM49
        Length = 387

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 84/267 (31%), Positives = 125/267 (46%)

Query:    35 PITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDK 94
             P T NN   N S    +G  + SKTNL +  L Q+ T ++L ++    G I S K + DK
Sbjct:    46 PTTINN---NCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDK 102

Query:    95 TTNKCRGYGFVDFESGGYALAAVKAL-----QDKGIHAQMARQQEQD--PTNLYIANLPL 147
              T +  GYGFV++     A  A+  L     Q K I    AR         NLY++ LP 
Sbjct:   103 ITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPK 162

Query:   148 NFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGS 206
                + +LE L ++Y  ++++RIL D     S+GVGF R + + + ++ I+  NG   PG+
Sbjct:   163 TMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGA 222

Query:   207 KEPLLVKFADSGLKKRGAGA-----GGPNIYRGPGAEVRLWGRDSADSQLAYEHPMTPI- 260
              EP+ VKFA++  +K            PN  R PG   +   R   D+ L   + +    
Sbjct:   223 TEPITVKFANNPSQKTNQAILSQLYQSPN-RRYPGPLAQQAQRFRLDNLLNMAYGVKRFS 281

Query:   261 PATIQYQRFTAGPGGTGHIPAGYTPWV 287
             P TI      AG    GH   G+  +V
Sbjct:   282 PMTIDGMTSLAGINIPGHPGTGWCIFV 308


>UNIPROTKB|Q12926 [details] [associations]
            symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
            evidence=TAS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
            Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
            HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
            EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
            EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
            RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
            UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
            STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
            PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
            Ensembl:ENST00000380110 Ensembl:ENST00000380117
            Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
            KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
            GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
            neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
            OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
            ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
            Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
        Length = 359

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 84/267 (31%), Positives = 125/267 (46%)

Query:    35 PITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDK 94
             P T NN   N S    +G  + SKTNL +  L Q+ T ++L ++    G I S K + DK
Sbjct:    18 PTTINN---NCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDK 74

Query:    95 TTNKCRGYGFVDFESGGYALAAVKAL-----QDKGIHAQMARQQEQD--PTNLYIANLPL 147
              T +  GYGFV++     A  A+  L     Q K I    AR         NLY++ LP 
Sbjct:    75 ITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPK 134

Query:   148 NFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGS 206
                + +LE L ++Y  ++++RIL D     S+GVGF R + + + ++ I+  NG   PG+
Sbjct:   135 TMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGA 194

Query:   207 KEPLLVKFADSGLKKRGAGA-----GGPNIYRGPGAEVRLWGRDSADSQLAYEHPMTPI- 260
              EP+ VKFA++  +K            PN  R PG   +   R   D+ L   + +    
Sbjct:   195 TEPITVKFANNPSQKTNQAILSQLYQSPN-RRYPGPLAQQAQRFRLDNLLNMAYGVKRFS 253

Query:   261 PATIQYQRFTAGPGGTGHIPAGYTPWV 287
             P TI      AG    GH   G+  +V
Sbjct:   254 PMTIDGMTSLAGINIPGHPGTGWCIFV 280


>UNIPROTKB|B4DVB8 [details] [associations]
            symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
            evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
            UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
            TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
            IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
            STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
            ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
        Length = 353

 Score = 242 (90.2 bits), Expect = 5.4e-23, Sum P(2) = 5.4e-23
 Identities = 56/168 (33%), Positives = 88/168 (52%)

Query:    56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALA 115
             + +TNL +  L Q+ T  +L ++ S  G + S K I DK      GYGFV++ +   A  
Sbjct:    44 IGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAER 103

Query:   116 AVKAL-----QDKGIHAQMARQQEQ--DPTNLYIANLPLNFKECDLESLLAKYVTVVSTR 168
             A+  L     Q K I    AR   +     NLYI+ LP    + D+E + +++  ++++R
Sbjct:   104 AINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSR 163

Query:   169 ILRDNNN-TSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFA 215
             +L D     S+GV F R + + + ++ I  FNG   PGS EP+ VKFA
Sbjct:   164 VLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA 211

 Score = 119 (46.9 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
 Identities = 24/64 (37%), Positives = 39/64 (60%)

Query:    54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYA 113
             E +   NLYI GL +  T KD+ +M S++G II+++ ++D+TT   RG  F+ F+    A
Sbjct:   128 EVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEA 187

Query:   114 LAAV 117
               A+
Sbjct:   188 EEAI 191

 Score = 73 (30.8 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
 Identities = 20/69 (28%), Positives = 33/69 (47%)

Query:   140 LYIANLPLNFKECDLESLLAKYVTVVSTRILRD-NNNTSKGVGFARLESKDKCDQMIQLF 198
             ++I NL  +  E  L  +   +  V + +++RD N N  KG GF  + + ++    I   
Sbjct:   273 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 332

Query:   199 NGSTLPGSK 207
             NG  L G K
Sbjct:   333 NGYRL-GDK 340

 Score = 38 (18.4 bits), Expect = 5.4e-23, Sum P(2) = 5.4e-23
 Identities = 13/33 (39%), Positives = 14/33 (42%)

Query:   249 SQLAYEHPMTPI--PATIQYQRFTAGPGGTGHI 279
             SQL Y  P      P   Q QRF   P G  H+
Sbjct:   224 SQL-YHSPARRFGGPVHHQAQRFRFSPMGVDHM 255


>UNIPROTKB|Q15717 [details] [associations]
            symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
            "3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
            "mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
            "AU-rich element binding" evidence=IDA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
            [GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
            "mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
            "positive regulation of translation" evidence=IDA] [GO:0003729
            "mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
            development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
            [GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
            evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
            [GO:0016071 "mRNA metabolic process" evidence=TAS]
            Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
            GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
            GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
            EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
            UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
            PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
            SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
            PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
            PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
            KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
            HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
            PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
            OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
            ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
            NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
            Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
            Uniprot:Q15717
        Length = 326

 Score = 242 (90.2 bits), Expect = 5.4e-23, Sum P(2) = 5.4e-23
 Identities = 56/168 (33%), Positives = 88/168 (52%)

Query:    56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALA 115
             + +TNL +  L Q+ T  +L ++ S  G + S K I DK      GYGFV++ +   A  
Sbjct:    17 IGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAER 76

Query:   116 AVKAL-----QDKGIHAQMARQQEQ--DPTNLYIANLPLNFKECDLESLLAKYVTVVSTR 168
             A+  L     Q K I    AR   +     NLYI+ LP    + D+E + +++  ++++R
Sbjct:    77 AINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSR 136

Query:   169 ILRDNNN-TSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFA 215
             +L D     S+GV F R + + + ++ I  FNG   PGS EP+ VKFA
Sbjct:   137 VLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA 184

 Score = 119 (46.9 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
 Identities = 24/64 (37%), Positives = 39/64 (60%)

Query:    54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYA 113
             E +   NLYI GL +  T KD+ +M S++G II+++ ++D+TT   RG  F+ F+    A
Sbjct:   101 EVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEA 160

Query:   114 LAAV 117
               A+
Sbjct:   161 EEAI 164

 Score = 73 (30.8 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
 Identities = 20/69 (28%), Positives = 33/69 (47%)

Query:   140 LYIANLPLNFKECDLESLLAKYVTVVSTRILRD-NNNTSKGVGFARLESKDKCDQMIQLF 198
             ++I NL  +  E  L  +   +  V + +++RD N N  KG GF  + + ++    I   
Sbjct:   246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305

Query:   199 NGSTLPGSK 207
             NG  L G K
Sbjct:   306 NGYRL-GDK 313

 Score = 38 (18.4 bits), Expect = 5.4e-23, Sum P(2) = 5.4e-23
 Identities = 13/33 (39%), Positives = 14/33 (42%)

Query:   249 SQLAYEHPMTPI--PATIQYQRFTAGPGGTGHI 279
             SQL Y  P      P   Q QRF   P G  H+
Sbjct:   197 SQL-YHSPARRFGGPVHHQAQRFRFSPMGVDHM 228


>UNIPROTKB|D4A7H6 [details] [associations]
            symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
            SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
            Uniprot:D4A7H6
        Length = 346

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 75/232 (32%), Positives = 114/232 (49%)

Query:    35 PITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDK 94
             P T NN   N S    +G  + SKTNL +  L Q+ T ++L ++    G I S K + DK
Sbjct:    18 PTTVNN---NCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDK 74

Query:    95 TTNKCRGYGFVDFESGGYALAAVKAL-----QDKGIHAQMARQQEQD--PTNLYIANLPL 147
              T +  GYGFV++     A  A+  L     Q K I    AR         NLY++ LP 
Sbjct:    75 ITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPK 134

Query:   148 NFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGS 206
                + +LE L ++Y  ++++RIL D     S+GVGF R + + + ++ I+  NG   PG+
Sbjct:   135 TMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGA 194

Query:   207 KEPLLVKFADSGLKKRGAGAGGPNIYRGPGAEVRLWGRDSADSQLAYEHPMT 258
              EP+ VKFA++  +K         +Y+ P    R  G  +  +Q     PMT
Sbjct:   195 TEPITVKFANNPSQKTNQAILS-QLYQSPNR--RYPGPLAQQAQRFRFSPMT 243


>RGD|628611 [details] [associations]
            symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
            Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
            TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
            UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
            PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
            ArrayExpress:Q8CH84 Genevestigator:Q8CH84
            GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
        Length = 359

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 84/267 (31%), Positives = 124/267 (46%)

Query:    35 PITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDK 94
             P T NN   N S    +G  + SKTNL    L Q+ T ++L ++    G I S K + DK
Sbjct:    18 PTTVNN---NCSSPVDSGNTEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDK 74

Query:    95 TTNKCRGYGFVDFESGGYALAAVKAL-----QDKGIHAQMARQQEQD--PTNLYIANLPL 147
              T +  GYGFV++     A  A+  L     Q K I    AR         NLY++ LP 
Sbjct:    75 ITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPK 134

Query:   148 NFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGS 206
                + +LE L ++Y  ++++RIL D     S+GVGF R + + + ++ I+  NG   PG+
Sbjct:   135 TMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGA 194

Query:   207 KEPLLVKFADSGLKKRGAGA-----GGPNIYRGPGAEVRLWGRDSADSQLAYEHPMTPI- 260
              EP+ VKFA++  +K            PN  R PG   +   R   D+ L   + +    
Sbjct:   195 TEPITVKFANNPSQKTNQAILSQLYQSPN-RRYPGPLAQQAQRFRLDNLLNMAYGVKRFS 253

Query:   261 PATIQYQRFTAGPGGTGHIPAGYTPWV 287
             P TI      AG    GH   G+  +V
Sbjct:   254 PMTIDGMTSLAGINIPGHPGTGWCIFV 280


>UNIPROTKB|Q8CH84 [details] [associations]
            symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
            TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
            UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
            PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
            ArrayExpress:Q8CH84 Genevestigator:Q8CH84
            GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
        Length = 359

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 84/267 (31%), Positives = 124/267 (46%)

Query:    35 PITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDK 94
             P T NN   N S    +G  + SKTNL    L Q+ T ++L ++    G I S K + DK
Sbjct:    18 PTTVNN---NCSSPVDSGNTEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDK 74

Query:    95 TTNKCRGYGFVDFESGGYALAAVKAL-----QDKGIHAQMARQQEQD--PTNLYIANLPL 147
              T +  GYGFV++     A  A+  L     Q K I    AR         NLY++ LP 
Sbjct:    75 ITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPK 134

Query:   148 NFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGS 206
                + +LE L ++Y  ++++RIL D     S+GVGF R + + + ++ I+  NG   PG+
Sbjct:   135 TMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGA 194

Query:   207 KEPLLVKFADSGLKKRGAGA-----GGPNIYRGPGAEVRLWGRDSADSQLAYEHPMTPI- 260
              EP+ VKFA++  +K            PN  R PG   +   R   D+ L   + +    
Sbjct:   195 TEPITVKFANNPSQKTNQAILSQLYQSPN-RRYPGPLAQQAQRFRLDNLLNMAYGVKRFS 253

Query:   261 PATIQYQRFTAGPGGTGHIPAGYTPWV 287
             P TI      AG    GH   G+  +V
Sbjct:   254 PMTIDGMTSLAGINIPGHPGTGWCIFV 280


>WB|WBGene00001368 [details] [associations]
            symbol:exc-7 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0002064 "epithelial cell development"
            evidence=IMP] [GO:0035150 "regulation of tube size" evidence=IMP]
            [GO:0016607 "nuclear speck" evidence=IDA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723
            GO:GO:0002064 eggNOG:COG0724 HOGENOM:HOG000231162
            TIGRFAMs:TIGR01661 HSSP:P26378 GeneTree:ENSGT00560000077064
            OMA:DIGESKT GO:GO:0035150 EMBL:Z36752 PIR:T21822 RefSeq:NP_496057.1
            ProteinModelPortal:Q20084 SMR:Q20084 DIP:DIP-27011N IntAct:Q20084
            MINT:MINT-1038844 STRING:Q20084 PaxDb:Q20084 EnsemblMetazoa:F35H8.5
            GeneID:174506 KEGG:cel:CELE_F35H8.5 CTD:174506 WormBase:F35H8.5
            InParanoid:Q20084 NextBio:884320 Uniprot:Q20084
        Length = 456

 Score = 257 (95.5 bits), Expect = 1.4e-21, P = 1.4e-21
 Identities = 66/188 (35%), Positives = 100/188 (53%)

Query:    38 TNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTN 97
             T+  ++  +P    G    SKTNL I  L Q  T +++ ++ +  G I S K + DK T 
Sbjct:    24 TSTQRYCSAPNVDIGE---SKTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTG 80

Query:    98 KCRGYGFVDFESGGYALAAVKA-----LQDKGIHAQMARQQEQD--PTNLYIANLPLNFK 150
             +  GYGFV++     AL AV +     LQ+K I    AR        +NLY++ +P +  
Sbjct:    81 QSLGYGFVNYVREEDALRAVSSFNGLRLQNKTIKVSYARPSNDQIKGSNLYVSGIPKSMT 140

Query:   151 ECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEP 209
               +LES+   +  ++++RIL DN    SKGVGF R + KD+ D  I+  NGS   G  E 
Sbjct:   141 LHELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNGSIPSGCSEQ 200

Query:   210 LLVKFADS 217
             + VKFA++
Sbjct:   201 ITVKFANN 208


>ZFIN|ZDB-GENE-040704-9 [details] [associations]
            symbol:elavl2 "ELAV (embryonic lethal, abnormal
            vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
            rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
            HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
            IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
            Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
        Length = 388

 Score = 253 (94.1 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 65/194 (33%), Positives = 103/194 (53%)

Query:    50 PTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFES 109
             P G E  SKTNL +  L Q+ T ++L ++    G I S K + DK T +  GYGFV++  
Sbjct:    60 PNGSED-SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYME 118

Query:   110 GGYALAAVKAL-----QDKGIHAQMARQQEQD--PTNLYIANLPLNFKECDLESLLAKYV 162
                A  A+  L     Q K I    AR         NLY++ LP    + +LE L +++ 
Sbjct:   119 PKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQFG 178

Query:   163 TVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKK 221
              ++++RIL D     S+GVGF R + + + ++ I+  NG   PG+ EP+ VKFA++  +K
Sbjct:   179 RIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 238

Query:   222 RGAGAGGPNIYRGP 235
               + A   ++Y+ P
Sbjct:   239 -SSQALLSHLYQSP 251


>UNIPROTKB|E1C240 [details] [associations]
            symbol:ELAVL2 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
            EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
            IPI:IPI00584568 ProteinModelPortal:E1C240
            Ensembl:ENSGALT00000025475 Uniprot:E1C240
        Length = 388

 Score = 251 (93.4 bits), Expect = 2.6e-21, P = 2.6e-21
 Identities = 80/263 (30%), Positives = 120/263 (45%)

Query:    39 NNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNK 98
             +N  +N S    +G  + SKTNL +  L Q  T ++L ++    G I S K + DK T +
Sbjct:    47 SNAINNCSSPIDSGNTEDSKTNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQ 106

Query:    99 CRGYGFVDFESGGYALAAVKAL-----QDKGIHAQMARQQEQD--PTNLYIANLPLNFKE 151
               GYGFV++     A  A+  L     Q K I    AR         NLY++ LP    +
Sbjct:   107 SLGYGFVNYVDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQ 166

Query:   152 CDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPL 210
              +LE L ++Y  ++++RIL D     S+GVGF R + + + ++ I+  NG   P + EP+
Sbjct:   167 KELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGLNGQKPPAATEPI 226

Query:   211 LVKFADSGLKKRGAGA-----GGPNI-YRGPGAEVRLWGRDSADSQLAYEHPMTPIPATI 264
              VKFA++  +K            PN  Y  P A+     R      +AY       P TI
Sbjct:   227 TVKFANNPSQKTNQAILSQLYHSPNRRYPAPLAQQAQRFRLDNLLNMAYGVKSRFPPMTI 286

Query:   265 QYQRFTAGPGGTGHIPAGYTPWV 287
                   AG    GH   G+  +V
Sbjct:   287 DGMTSLAGINIPGHAGTGWCIFV 309


>ZFIN|ZDB-GENE-980526-76 [details] [associations]
            symbol:elavl3 "ELAV (embryonic lethal, abnormal
            vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
            rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
            HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
            EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
            SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
            InParanoid:Q6P105 Uniprot:Q6P105
        Length = 359

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 69/207 (33%), Positives = 104/207 (50%)

Query:    36 ITTNNVQ-HNGSPGT--PTGP-------EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPI 85
             I+T   Q  NG  GT  P GP          SKTNL +  L Q+ T ++  ++    G I
Sbjct:     5 ISTMETQVSNGPSGTSLPNGPVISTNGATDDSKTNLIVNYLPQNMTQEEFKSLFGSIGEI 64

Query:    86 ISTKAILDKTTNKCRGYGFVDFESGGYALAAVKAL-----QDKGIHAQMARQQEQD--PT 138
              S K + DK T +  GYGFV++     A  A+  L     Q K I    AR         
Sbjct:    65 ESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDA 124

Query:   139 NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNT--SKGVGFARLESKDKCDQMIQ 196
             NLY++ LP    + D+E L ++Y  ++++RIL D      S+GVGF R + +++ ++ I+
Sbjct:   125 NLYVSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTAGISRGVGFIRFDKRNEAEEAIK 184

Query:   197 LFNGSTLPGSKEPLLVKFADSGLKKRG 223
               NG    G+ EP+ VKFA++  +K G
Sbjct:   185 GLNGQKPLGAAEPITVKFANNPSQKTG 211


>FB|FBgn0086675 [details] [associations]
            symbol:fne "found in neurons" species:7227 "Drosophila
            melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0051252 "regulation of
            RNA metabolic process" evidence=IMP] [GO:0008266 "poly(U) RNA
            binding" evidence=IDA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0008049 "male courtship behavior" evidence=IMP]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
            EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724
            TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 KO:K13208
            OMA:SNSRNCP HSSP:Q60900 GO:GO:0051252 EMBL:AF239667 EMBL:BT120384
            RefSeq:NP_001096965.1 RefSeq:NP_001245646.1 RefSeq:NP_001245648.1
            RefSeq:NP_001245649.1 RefSeq:NP_572842.1 UniGene:Dm.3314 SMR:Q9VYI0
            IntAct:Q9VYI0 MINT:MINT-1646975 STRING:Q9VYI0
            EnsemblMetazoa:FBtr0073712 EnsemblMetazoa:FBtr0113493
            EnsemblMetazoa:FBtr0306738 EnsemblMetazoa:FBtr0308694
            EnsemblMetazoa:FBtr0308695 EnsemblMetazoa:FBtr0333319
            EnsemblMetazoa:FBtr0333320 GeneID:32245 KEGG:dme:Dmel_CG4396
            UCSC:CG4396-RA CTD:32245 FlyBase:FBgn0086675 InParanoid:Q9VYI0
            OrthoDB:EOG44B8HT GenomeRNAi:32245 NextBio:777561 Uniprot:Q9VYI0
        Length = 356

 Score = 203 (76.5 bits), Expect = 9.6e-21, Sum P(2) = 9.6e-21
 Identities = 53/146 (36%), Positives = 76/146 (52%)

Query:   101 GYGFVDFESGGYALAAVKAL-----QDKGIHAQMARQQEQD--PTNLYIANLPLNFKECD 153
             GYGFV++     A  AV  L     Q+K I    AR   +     NLY++ LP N  + D
Sbjct:    86 GYGFVNYVRAEDAEKAVNTLNGLRLQNKVIKVSYARPSSESIKGANLYVSGLPKNLSQPD 145

Query:   154 LESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLV 212
             LE + A +  ++++RIL DN +  SKGVGF R + +++ ++ IQ  NG T  G  EP+ V
Sbjct:   146 LEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQRNEAERAIQELNGKTPKGYAEPITV 205

Query:   213 KFADSGLKKRGAGAGGP-NIYRGPGA 237
             KFA++      A    P   Y  P A
Sbjct:   206 KFANNPSNSAKAQIAPPLTAYLTPQA 231

 Score = 118 (46.6 bits), Expect = 0.00016, P = 0.00016
 Identities = 29/110 (26%), Positives = 52/110 (47%)

Query:    54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYA 113
             E +   NLY+ GL ++ +  DL  M + +G II+++ + D  +   +G GF+ F+    A
Sbjct:   125 ESIKGANLYVSGLPKNLSQPDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQRNEA 184

Query:   114 LAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDLESLLAKYVT 163
               A++ L  K        +   +P  +  AN P N  +  +   L  Y+T
Sbjct:   185 ERAIQELNGK------TPKGYAEPITVKFANNPSNSAKAQIAPPLTAYLT 228

 Score = 74 (31.1 bits), Expect = 9.6e-21, Sum P(2) = 9.6e-21
 Identities = 18/58 (31%), Positives = 31/58 (53%)

Query:    40 NVQHNGSP-GTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTT 96
             ++  NGS  G+  G    S+TNL +  L Q  T +++ ++ S  G + S K + DK +
Sbjct:     6 DIVKNGSANGSVDGSNDESRTNLIVNYLPQTMTQEEMRSLFSSIGELESCKLVRDKVS 63


>UNIPROTKB|F1N9I5 [details] [associations]
            symbol:ELAVL1 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
            [GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
            "positive regulation of translation" evidence=IEA] [GO:0070935
            "3'-UTR-mediated mRNA stabilization" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
            TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
            EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
            Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
        Length = 326

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 56/170 (32%), Positives = 90/170 (52%)

Query:    54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYA 113
             + + +TNL +  L Q+ T  +L ++ S  G + S K I DK      GYGFV++ +   A
Sbjct:    15 DDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDA 74

Query:   114 LAAVKAL-----QDKGIHAQMARQQEQ--DPTNLYIANLPLNFKECDLESLLAKYVTVVS 166
               A+  L     Q K I    AR   +     NLYI+ LP +  + D+E + +++  +++
Sbjct:    75 ERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRSMTQKDVEDMFSRFGRIIN 134

Query:   167 TRILRDNNN-TSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFA 215
             +R+L D     S+GV F R + + + ++ I  FNG   PGS EP+ VKFA
Sbjct:   135 SRVLVDQTTGLSRGVAFIRFDKRSEAEEAITNFNGHKPPGSSEPITVKFA 184


>UNIPROTKB|Q6GLB5 [details] [associations]
            symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
            (Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
            [GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
            binding" evidence=ISS] [GO:0008298 "intracellular mRNA
            localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
            evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
            [GO:0051259 "protein oligomerization" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
            GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
            HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
            OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
            RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
            SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
            Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
        Length = 326

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 56/170 (32%), Positives = 88/170 (51%)

Query:    54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYA 113
             + + +TNL +  L Q+ T  +L ++ S  G + S K I DK      GYGFV++ +   A
Sbjct:    15 DDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDA 74

Query:   114 LAAVKAL-----QDKGIHAQMARQQEQD--PTNLYIANLPLNFKECDLESLLAKYVTVVS 166
               A+  L     Q K I   +AR   +     NLYI+ LP    + D+E +   +  +++
Sbjct:    75 ERAINTLNGLRLQSKTIKVSVARPSSESIKDANLYISGLPRTMTQKDVEDMFLPFGRIIN 134

Query:   167 TRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFA 215
             +R+L D     S+GV F R + + + ++ I  FNG   PGS EP+ VKFA
Sbjct:   135 SRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFA 184


>MGI|MGI:109157 [details] [associations]
            symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
            Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0007275 "multicellular organismal development" evidence=IEA]
            [GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
            "AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
            differentiation" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
            HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
            ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
            IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
            UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
            PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
            STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
            Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
            UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
            EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
            Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
        Length = 367

 Score = 241 (89.9 bits), Expect = 2.6e-20, P = 2.6e-20
 Identities = 61/184 (33%), Positives = 94/184 (51%)

Query:    48 GTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDF 107
             GT  G    SKTNL +  L Q+ T  +  ++    G I S K + DK T +  GYGFV++
Sbjct:    29 GT-NGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNY 87

Query:   108 ESGGYALAAVKAL-----QDKGIHAQMARQQEQD--PTNLYIANLPLNFKECDLESLLAK 160
                  A  A+  L     Q K I    AR         NLY++ LP    + ++E L ++
Sbjct:    88 SDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQ 147

Query:   161 YVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGL 219
             Y  ++++RIL D     S+GVGF R + + + ++ I+  NG    G+ EP+ VKFA++  
Sbjct:   148 YGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPS 207

Query:   220 KKRG 223
             +K G
Sbjct:   208 QKTG 211


>RGD|628892 [details] [associations]
            symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
            Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
            HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
            EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
            SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
            KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
            Genevestigator:Q76IJ9 Uniprot:Q76IJ9
        Length = 367

 Score = 241 (89.9 bits), Expect = 2.6e-20, P = 2.6e-20
 Identities = 61/184 (33%), Positives = 94/184 (51%)

Query:    48 GTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDF 107
             GT  G    SKTNL +  L Q+ T  +  ++    G I S K + DK T +  GYGFV++
Sbjct:    29 GT-NGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNY 87

Query:   108 ESGGYALAAVKAL-----QDKGIHAQMARQQEQD--PTNLYIANLPLNFKECDLESLLAK 160
                  A  A+  L     Q K I    AR         NLY++ LP    + ++E L ++
Sbjct:    88 SDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQ 147

Query:   161 YVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGL 219
             Y  ++++RIL D     S+GVGF R + + + ++ I+  NG    G+ EP+ VKFA++  
Sbjct:   148 YGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPS 207

Query:   220 KKRG 223
             +K G
Sbjct:   208 QKTG 211


>UNIPROTKB|F1PVV1 [details] [associations]
            symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
            Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
        Length = 367

 Score = 240 (89.5 bits), Expect = 3.4e-20, P = 3.4e-20
 Identities = 61/184 (33%), Positives = 94/184 (51%)

Query:    48 GTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDF 107
             GT  G    SKTNL +  L Q+ T  +  ++    G I S K + DK T +  GYGFV++
Sbjct:    29 GT-NGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNY 87

Query:   108 ESGGYALAAVKAL-----QDKGIHAQMARQQEQD--PTNLYIANLPLNFKECDLESLLAK 160
                  A  A+  L     Q K I    AR         NLY++ LP    + ++E L ++
Sbjct:    88 SDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQ 147

Query:   161 YVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGL 219
             Y  ++++RIL D     S+GVGF R + + + ++ I+  NG    G+ EP+ VKFA++  
Sbjct:   148 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPS 207

Query:   220 KKRG 223
             +K G
Sbjct:   208 QKTG 211


>UNIPROTKB|Q14576 [details] [associations]
            symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
            "nervous system development" evidence=IEA] [GO:0030154 "cell
            differentiation" evidence=IEA] [GO:0017091 "AU-rich element
            binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
            HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
            KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
            EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
            RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
            SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
            PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
            Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
            KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
            GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
            neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
            PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
            ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
            Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
        Length = 367

 Score = 240 (89.5 bits), Expect = 3.4e-20, P = 3.4e-20
 Identities = 61/184 (33%), Positives = 94/184 (51%)

Query:    48 GTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDF 107
             GT  G    SKTNL +  L Q+ T  +  ++    G I S K + DK T +  GYGFV++
Sbjct:    29 GT-NGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNY 87

Query:   108 ESGGYALAAVKAL-----QDKGIHAQMARQQEQD--PTNLYIANLPLNFKECDLESLLAK 160
                  A  A+  L     Q K I    AR         NLY++ LP    + ++E L ++
Sbjct:    88 SDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQ 147

Query:   161 YVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGL 219
             Y  ++++RIL D     S+GVGF R + + + ++ I+  NG    G+ EP+ VKFA++  
Sbjct:   148 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPS 207

Query:   220 KKRG 223
             +K G
Sbjct:   208 QKTG 211


>UNIPROTKB|F1SA16 [details] [associations]
            symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
            Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
        Length = 367

 Score = 240 (89.5 bits), Expect = 3.4e-20, P = 3.4e-20
 Identities = 61/184 (33%), Positives = 94/184 (51%)

Query:    48 GTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDF 107
             GT  G    SKTNL +  L Q+ T  +  ++    G I S K + DK T +  GYGFV++
Sbjct:    29 GT-NGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNY 87

Query:   108 ESGGYALAAVKAL-----QDKGIHAQMARQQEQD--PTNLYIANLPLNFKECDLESLLAK 160
                  A  A+  L     Q K I    AR         NLY++ LP    + ++E L ++
Sbjct:    88 SDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQ 147

Query:   161 YVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGL 219
             Y  ++++RIL D     S+GVGF R + + + ++ I+  NG    G+ EP+ VKFA++  
Sbjct:   148 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPS 207

Query:   220 KKRG 223
             +K G
Sbjct:   208 QKTG 211


>UNIPROTKB|F1N4V6 [details] [associations]
            symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
            IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
        Length = 368

 Score = 240 (89.5 bits), Expect = 3.4e-20, P = 3.4e-20
 Identities = 61/184 (33%), Positives = 94/184 (51%)

Query:    48 GTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDF 107
             GT  G    SKTNL +  L Q+ T  +  ++    G I S K + DK T +  GYGFV++
Sbjct:    29 GT-NGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNY 87

Query:   108 ESGGYALAAVKAL-----QDKGIHAQMARQQEQD--PTNLYIANLPLNFKECDLESLLAK 160
                  A  A+  L     Q K I    AR         NLY++ LP    + ++E L ++
Sbjct:    88 SDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQ 147

Query:   161 YVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGL 219
             Y  ++++RIL D     S+GVGF R + + + ++ I+  NG    G+ EP+ VKFA++  
Sbjct:   148 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPS 207

Query:   220 KKRG 223
             +K G
Sbjct:   208 QKTG 211


>UNIPROTKB|Q5U259 [details] [associations]
            symbol:elavl1-b "ELAV-like protein 1-B" species:8355
            "Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
            "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
            evidence=ISS] [GO:0008298 "intracellular mRNA localization"
            evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
            [GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
            oligomerization" evidence=ISS] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
            GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
            TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
            UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
            GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
            Uniprot:Q5U259
        Length = 326

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 56/170 (32%), Positives = 87/170 (51%)

Query:    54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYA 113
             + + +TNL +  L Q+ T  +L ++ S  G + S K I DK      GYGFV++ +   A
Sbjct:    15 DDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDA 74

Query:   114 LAAVKAL-----QDKGIHAQMARQQEQD--PTNLYIANLPLNFKECDLESLLAKYVTVVS 166
               A+  L     Q K I    AR   +     NLYI+ LP    + D+E +   +  +++
Sbjct:    75 ERAINTLNGLRLQSKTIKVSFARPSSETIKDANLYISGLPRTMTQKDVEDMFLPFGHIIN 134

Query:   167 TRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFA 215
             +R+L D     S+GV F R + + + ++ I  FNG   PGS EP+ VKFA
Sbjct:   135 SRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFA 184


>ZFIN|ZDB-GENE-990415-246 [details] [associations]
            symbol:elavl4 "ELAV (embryonic lethal, abnormal
            vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
            rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
            EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
            Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
            Uniprot:F1R133
        Length = 408

 Score = 241 (89.9 bits), Expect = 5.2e-20, P = 5.2e-20
 Identities = 78/264 (29%), Positives = 119/264 (45%)

Query:    38 TNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTN 97
             ++N +   SP    G    SKTNL +  L Q+ T ++  ++    G I S K + DK T 
Sbjct:    67 SSNSRSCPSPMQTGGSNDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG 126

Query:    98 KCRGYGFVDFESGGYALAAVKAL-----QDKGIHAQMARQQEQD--PTNLYIANLPLNFK 150
             +  GYGFV++     A  A+  L     Q K I    AR         NLY++ LP    
Sbjct:   127 QSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMT 186

Query:   151 ECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEP 209
             + +LE L ++Y  ++++RIL D     S+GVGF R + + + ++ I+  NG    G+ EP
Sbjct:   187 QKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAAEP 246

Query:   210 LLVKFADSGLKKRGAGA-----GGPNIYRGPGAEVRLWGRDSADSQLAYEHPMTPI-PAT 263
             + VKFA++  +K            PN  R PG       R   D+ L   + +    P T
Sbjct:   247 ITVKFANNPSQKTSQALLSQLYQSPN-RRYPGPLHHQAQRFRLDNLLNMAYGVKRFSPIT 305

Query:   264 IQYQRFTAGPGGTGHIPAGYTPWV 287
             I       G    GH   G+  +V
Sbjct:   306 IDSMTSLVGMNIPGHTGTGWCIFV 329


>UNIPROTKB|F1NLH0 [details] [associations]
            symbol:ELAVL4 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0017091 "AU-rich element binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
            TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
            EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
            Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
        Length = 371

 Score = 238 (88.8 bits), Expect = 6.4e-20, P = 6.4e-20
 Identities = 80/269 (29%), Positives = 118/269 (43%)

Query:    37 TTNNVQHNG----SPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAIL 92
             TTN    N     SP         SKTNL +  L Q+ T ++  ++    G I S K + 
Sbjct:    25 TTNGPSSNSRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVR 84

Query:    93 DKTTNKCRGYGFVDFESGGYALAAVKAL-----QDKGIHAQMARQQEQD--PTNLYIANL 145
             DK T +  GYGFV++     A  A+  L     Q K I    AR         NLY++ L
Sbjct:    85 DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGL 144

Query:   146 PLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLP 204
             P    + +LE L ++Y  ++++RIL D     S+GVGF R + + + ++ I+  NG    
Sbjct:   145 PKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPS 204

Query:   205 GSKEPLLVKFADSGLKKRGAGA-----GGPNIYRGPGAEVRLWGRDSADSQLAYEHPMTP 259
             G+ EP+ VKFA++  +K            PN  R PG       R   D+ L   + +  
Sbjct:   205 GATEPITVKFANNPSQKTSQALLSQLYQSPN-RRYPGPLHHQAQRFRLDNLLNMAYGVKR 263

Query:   260 I-PATIQYQRFTAGPGGTGHIPAGYTPWV 287
               P TI       G    GH   G+  +V
Sbjct:   264 FSPITIDGMTSLVGMNIPGHTGTGWCIFV 292


>UNIPROTKB|Q91903 [details] [associations]
            symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
            laevis" [GO:0000122 "negative regulation of transcription from RNA
            polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
            binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
            [GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
            development" evidence=IMP] [GO:0008298 "intracellular mRNA
            localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
            polyadenylylation element binding" evidence=IDA] [GO:0030529
            "ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
            regulation of transcription, DNA-dependent" evidence=IDA]
            [GO:0051260 "protein homooligomerization" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
            GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
            GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
            HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
            EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
            RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
            ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
            GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
            CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
            Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
        Length = 389

 Score = 239 (89.2 bits), Expect = 6.8e-20, P = 6.8e-20
 Identities = 64/191 (33%), Positives = 98/191 (51%)

Query:    40 NVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTN-K 98
             N  +  SP      E  SKTNL +  L Q+ T ++L ++    G I S K + DK T  +
Sbjct:    48 NTINCSSPVESNNTED-SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQ 106

Query:    99 CRGYGFVDFESGGYALAAVKAL-----QDKGIHAQMARQQEQD--PTNLYIANLPLNFKE 151
               GYGFV++     A  A+  L     Q K I    AR         NLY++ LP    +
Sbjct:   107 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQ 166

Query:   152 CDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPL 210
              +LE L ++Y  ++++RIL D     S+GVGF R + + + ++ I+  NG   PG+ EP+
Sbjct:   167 KELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPI 226

Query:   211 LVKFADSGLKK 221
              VKFA++  +K
Sbjct:   227 TVKFANNPSQK 237


>UNIPROTKB|D4AAT0 [details] [associations]
            symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
            Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
        Length = 351

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 61/187 (32%), Positives = 97/187 (51%)

Query:    57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAA 116
             SKTNL +  L Q+ T ++  ++    G I S K + DK T +  GYGFV++     A  A
Sbjct:    42 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 101

Query:   117 VKAL-----QDKGIHAQMARQQEQD--PTNLYIANLPLNFKECDLESLLAKYVTVVSTRI 169
             +  L     Q K I    AR         NLY++ LP    + +LE L ++Y  ++++RI
Sbjct:   102 INTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 161

Query:   170 LRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRGAGAGG 228
             L D     S+GVGF R + + + ++ I+  NG    G+ EP+ VKFA++  +K  + A  
Sbjct:   162 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQK-SSQALL 220

Query:   229 PNIYRGP 235
               +Y+ P
Sbjct:   221 SQLYQSP 227


>UNIPROTKB|A2VDK5 [details] [associations]
            symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
            HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
            OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
            IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
            STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
            KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
        Length = 366

 Score = 236 (88.1 bits), Expect = 1.0e-19, P = 1.0e-19
 Identities = 61/187 (32%), Positives = 97/187 (51%)

Query:    57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAA 116
             SKTNL +  L Q+ T ++  ++    G I S K + DK T +  GYGFV++     A  A
Sbjct:    44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 103

Query:   117 VKAL-----QDKGIHAQMARQQEQD--PTNLYIANLPLNFKECDLESLLAKYVTVVSTRI 169
             +  L     Q K I    AR         NLY++ LP    + +LE L ++Y  ++++RI
Sbjct:   104 INTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 163

Query:   170 LRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRGAGAGG 228
             L D     S+GVGF R + + + ++ I+  NG    G+ EP+ VKFA++  +K  + A  
Sbjct:   164 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQK-SSQALL 222

Query:   229 PNIYRGP 235
               +Y+ P
Sbjct:   223 SQLYQSP 229


>UNIPROTKB|J9PAL3 [details] [associations]
            symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
            RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
            Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
            Uniprot:J9PAL3
        Length = 366

 Score = 236 (88.1 bits), Expect = 1.0e-19, P = 1.0e-19
 Identities = 61/187 (32%), Positives = 97/187 (51%)

Query:    57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAA 116
             SKTNL +  L Q+ T ++  ++    G I S K + DK T +  GYGFV++     A  A
Sbjct:    44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 103

Query:   117 VKAL-----QDKGIHAQMARQQEQD--PTNLYIANLPLNFKECDLESLLAKYVTVVSTRI 169
             +  L     Q K I    AR         NLY++ LP    + +LE L ++Y  ++++RI
Sbjct:   104 INTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 163

Query:   170 LRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRGAGAGG 228
             L D     S+GVGF R + + + ++ I+  NG    G+ EP+ VKFA++  +K  + A  
Sbjct:   164 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQK-SSQALL 222

Query:   229 PNIYRGP 235
               +Y+ P
Sbjct:   223 SQLYQSP 229


>UNIPROTKB|B1APY9 [details] [associations]
            symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
            protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
            TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
            UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
            SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
            Uniprot:B1APY9
        Length = 371

 Score = 236 (88.1 bits), Expect = 1.1e-19, P = 1.1e-19
 Identities = 61/187 (32%), Positives = 97/187 (51%)

Query:    57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAA 116
             SKTNL +  L Q+ T ++  ++    G I S K + DK T +  GYGFV++     A  A
Sbjct:    49 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 108

Query:   117 VKAL-----QDKGIHAQMARQQEQD--PTNLYIANLPLNFKECDLESLLAKYVTVVSTRI 169
             +  L     Q K I    AR         NLY++ LP    + +LE L ++Y  ++++RI
Sbjct:   109 INTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 168

Query:   170 LRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRGAGAGG 228
             L D     S+GVGF R + + + ++ I+  NG    G+ EP+ VKFA++  +K  + A  
Sbjct:   169 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQK-SSQALL 227

Query:   229 PNIYRGP 235
               +Y+ P
Sbjct:   228 SQLYQSP 234


>RGD|1560027 [details] [associations]
            symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
            Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
            binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
            eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
            TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
            EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
            ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
            PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
            InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
            Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
        Length = 373

 Score = 236 (88.1 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 61/187 (32%), Positives = 97/187 (51%)

Query:    57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAA 116
             SKTNL +  L Q+ T ++  ++    G I S K + DK T +  GYGFV++     A  A
Sbjct:    37 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 96

Query:   117 VKAL-----QDKGIHAQMARQQEQD--PTNLYIANLPLNFKECDLESLLAKYVTVVSTRI 169
             +  L     Q K I    AR         NLY++ LP    + +LE L ++Y  ++++RI
Sbjct:    97 INTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 156

Query:   170 LRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRGAGAGG 228
             L D     S+GVGF R + + + ++ I+  NG    G+ EP+ VKFA++  +K  + A  
Sbjct:   157 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQK-SSQALL 215

Query:   229 PNIYRGP 235
               +Y+ P
Sbjct:   216 SQLYQSP 222


>UNIPROTKB|O09032 [details] [associations]
            symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
            HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
            CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
            RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
            SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
            KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
            ArrayExpress:O09032 Genevestigator:O09032
            GermOnline:ENSRNOG00000023601 Uniprot:O09032
        Length = 373

 Score = 236 (88.1 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 61/187 (32%), Positives = 97/187 (51%)

Query:    57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAA 116
             SKTNL +  L Q+ T ++  ++    G I S K + DK T +  GYGFV++     A  A
Sbjct:    37 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 96

Query:   117 VKAL-----QDKGIHAQMARQQEQD--PTNLYIANLPLNFKECDLESLLAKYVTVVSTRI 169
             +  L     Q K I    AR         NLY++ LP    + +LE L ++Y  ++++RI
Sbjct:    97 INTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 156

Query:   170 LRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRGAGAGG 228
             L D     S+GVGF R + + + ++ I+  NG    G+ EP+ VKFA++  +K  + A  
Sbjct:   157 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQK-SSQALL 215

Query:   229 PNIYRGP 235
               +Y+ P
Sbjct:   216 SQLYQSP 222


>UNIPROTKB|P26378 [details] [associations]
            symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
            "AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
            processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
            processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
            eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
            HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
            EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
            EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
            EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
            IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
            RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
            RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
            PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
            MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
            PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
            Ensembl:ENST00000371823 Ensembl:ENST00000371824
            Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
            KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
            UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
            HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
            EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
            ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
            Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
        Length = 380

 Score = 236 (88.1 bits), Expect = 1.3e-19, P = 1.3e-19
 Identities = 61/187 (32%), Positives = 97/187 (51%)

Query:    57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAA 116
             SKTNL +  L Q+ T ++  ++    G I S K + DK T +  GYGFV++     A  A
Sbjct:    44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 103

Query:   117 VKAL-----QDKGIHAQMARQQEQD--PTNLYIANLPLNFKECDLESLLAKYVTVVSTRI 169
             +  L     Q K I    AR         NLY++ LP    + +LE L ++Y  ++++RI
Sbjct:   104 INTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 163

Query:   170 LRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRGAGAGG 228
             L D     S+GVGF R + + + ++ I+  NG    G+ EP+ VKFA++  +K  + A  
Sbjct:   164 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQK-SSQALL 222

Query:   229 PNIYRGP 235
               +Y+ P
Sbjct:   223 SQLYQSP 229


>UNIPROTKB|F1LRX3 [details] [associations]
            symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0017091 "AU-rich element binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
            Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
        Length = 380

 Score = 236 (88.1 bits), Expect = 1.3e-19, P = 1.3e-19
 Identities = 61/187 (32%), Positives = 97/187 (51%)

Query:    57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAA 116
             SKTNL +  L Q+ T ++  ++    G I S K + DK T +  GYGFV++     A  A
Sbjct:    44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 103

Query:   117 VKAL-----QDKGIHAQMARQQEQD--PTNLYIANLPLNFKECDLESLLAKYVTVVSTRI 169
             +  L     Q K I    AR         NLY++ LP    + +LE L ++Y  ++++RI
Sbjct:   104 INTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 163

Query:   170 LRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRGAGAGG 228
             L D     S+GVGF R + + + ++ I+  NG    G+ EP+ VKFA++  +K  + A  
Sbjct:   164 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQK-SSQALL 222

Query:   229 PNIYRGP 235
               +Y+ P
Sbjct:   223 SQLYQSP 229


>UNIPROTKB|F1P856 [details] [associations]
            symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
            Ensembl:ENSCAFT00000006315 Uniprot:F1P856
        Length = 382

 Score = 236 (88.1 bits), Expect = 1.3e-19, P = 1.3e-19
 Identities = 61/187 (32%), Positives = 97/187 (51%)

Query:    57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAA 116
             SKTNL +  L Q+ T ++  ++    G I S K + DK T +  GYGFV++     A  A
Sbjct:    60 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 119

Query:   117 VKAL-----QDKGIHAQMARQQEQD--PTNLYIANLPLNFKECDLESLLAKYVTVVSTRI 169
             +  L     Q K I    AR         NLY++ LP    + +LE L ++Y  ++++RI
Sbjct:   120 INTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 179

Query:   170 LRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRGAGAGG 228
             L D     S+GVGF R + + + ++ I+  NG    G+ EP+ VKFA++  +K  + A  
Sbjct:   180 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQK-SSQALL 238

Query:   229 PNIYRGP 235
               +Y+ P
Sbjct:   239 SQLYQSP 245


>UNIPROTKB|F1LRL1 [details] [associations]
            symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0017091 "AU-rich element binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
            Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
        Length = 384

 Score = 236 (88.1 bits), Expect = 1.4e-19, P = 1.4e-19
 Identities = 61/187 (32%), Positives = 97/187 (51%)

Query:    57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAA 116
             SKTNL +  L Q+ T ++  ++    G I S K + DK T +  GYGFV++     A  A
Sbjct:    48 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 107

Query:   117 VKAL-----QDKGIHAQMARQQEQD--PTNLYIANLPLNFKECDLESLLAKYVTVVSTRI 169
             +  L     Q K I    AR         NLY++ LP    + +LE L ++Y  ++++RI
Sbjct:   108 INTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 167

Query:   170 LRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRGAGAGG 228
             L D     S+GVGF R + + + ++ I+  NG    G+ EP+ VKFA++  +K  + A  
Sbjct:   168 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQK-SSQALL 226

Query:   229 PNIYRGP 235
               +Y+ P
Sbjct:   227 SQLYQSP 233


>UNIPROTKB|B1APY8 [details] [associations]
            symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
            TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
            EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
            IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
            Uniprot:B1APY8
        Length = 385

 Score = 236 (88.1 bits), Expect = 1.4e-19, P = 1.4e-19
 Identities = 61/187 (32%), Positives = 97/187 (51%)

Query:    57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAA 116
             SKTNL +  L Q+ T ++  ++    G I S K + DK T +  GYGFV++     A  A
Sbjct:    49 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 108

Query:   117 VKAL-----QDKGIHAQMARQQEQD--PTNLYIANLPLNFKECDLESLLAKYVTVVSTRI 169
             +  L     Q K I    AR         NLY++ LP    + +LE L ++Y  ++++RI
Sbjct:   109 INTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 168

Query:   170 LRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRGAGAGG 228
             L D     S+GVGF R + + + ++ I+  NG    G+ EP+ VKFA++  +K  + A  
Sbjct:   169 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQK-SSQALL 227

Query:   229 PNIYRGP 235
               +Y+ P
Sbjct:   228 SQLYQSP 234


>MGI|MGI:107427 [details] [associations]
            symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
            Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0017091 "AU-rich element binding" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
            HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
            EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
            PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
            ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
            PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
            Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
            InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
            Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
        Length = 385

 Score = 236 (88.1 bits), Expect = 1.4e-19, P = 1.4e-19
 Identities = 61/187 (32%), Positives = 97/187 (51%)

Query:    57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAA 116
             SKTNL +  L Q+ T ++  ++    G I S K + DK T +  GYGFV++     A  A
Sbjct:    49 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 108

Query:   117 VKAL-----QDKGIHAQMARQQEQD--PTNLYIANLPLNFKECDLESLLAKYVTVVSTRI 169
             +  L     Q K I    AR         NLY++ LP    + +LE L ++Y  ++++RI
Sbjct:   109 INTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 168

Query:   170 LRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRGAGAGG 228
             L D     S+GVGF R + + + ++ I+  NG    G+ EP+ VKFA++  +K  + A  
Sbjct:   169 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQK-SSQALL 227

Query:   229 PNIYRGP 235
               +Y+ P
Sbjct:   228 SQLYQSP 234


>ZFIN|ZDB-GENE-990415-245 [details] [associations]
            symbol:elavl1 "ELAV (embryonic lethal, abnormal
            vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
            rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
            PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
            Bgee:F1QM02 Uniprot:F1QM02
        Length = 340

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 56/169 (33%), Positives = 86/169 (50%)

Query:    57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAA 116
             SKTNL +  L Q+ +  +L ++ S  G + S K I DK      GYGFV++ +   A  A
Sbjct:    32 SKTNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERA 91

Query:   117 VKAL-----QDKGIHAQMARQQEQD--PTNLYIANLPLNFKECDLESLLAKYVTVVSTRI 169
             +  L     Q K I    AR         NLYI+ LP    + D+E +  +Y  ++++R+
Sbjct:    92 ISTLNGLRLQSKTIKVSYARPSSDSIKDANLYISGLPKTMTQKDVEEMFGRYGRIINSRV 151

Query:   170 LRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADS 217
             L D  +  S+GV F R + + + +  I+  NG   PG+ E + VKFA S
Sbjct:   152 LVDQASGLSRGVAFIRFDKRAEAEDAIKDLNGQKPPGAAEQMTVKFAAS 200

 Score = 114 (45.2 bits), Expect = 9.0e-08, Sum P(2) = 9.0e-08
 Identities = 23/67 (34%), Positives = 38/67 (56%)

Query:    54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYA 113
             + +   NLYI GL +  T KD+  M  +YG II+++ ++D+ +   RG  F+ F+    A
Sbjct:   115 DSIKDANLYISGLPKTMTQKDVEEMFGRYGRIINSRVLVDQASGLSRGVAFIRFDKRAEA 174

Query:   114 LAAVKAL 120
               A+K L
Sbjct:   175 EDAIKDL 181

 Score = 73 (30.8 bits), Expect = 9.0e-08, Sum P(2) = 9.0e-08
 Identities = 24/79 (30%), Positives = 36/79 (45%)

Query:   140 LYIANLPLNFKECDLESLLAKYVTVVSTRILRD-NNNTSKGVGFARLESKDKCDQMIQLF 198
             ++I NL  +  E  L  +   +  V + +++RD N N  KG GF  +   ++    I   
Sbjct:   260 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAIASL 319

Query:   199 NGSTLPGSKEPLLVKFADS 217
             NG  L G K  L V F  S
Sbjct:   320 NGYRL-GDKI-LQVSFKTS 336


>FB|FBgn0264270 [details] [associations]
            symbol:Sxl "Sex lethal" species:7227 "Drosophila
            melanogaster" [GO:0048024 "regulation of mRNA splicing, via
            spliceosome" evidence=NAS;TAS] [GO:0019099 "female germ-line sex
            determination" evidence=TAS] [GO:0007549 "dosage compensation"
            evidence=NAS;TAS] [GO:0019101 "female somatic sex determination"
            evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0008187 "poly-pyrimidine tract binding" evidence=IDA]
            [GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
            evidence=TAS] [GO:0007541 "sex determination, primary response to
            X:A ratio" evidence=NAS;TAS] [GO:0048477 "oogenesis" evidence=TAS]
            [GO:0030237 "female sex determination" evidence=NAS] [GO:0007131
            "reciprocal meiotic recombination" evidence=TAS] [GO:0018993
            "somatic sex determination" evidence=NAS;TAS] [GO:0003729 "mRNA
            binding" evidence=ISS;TAS] [GO:0007530 "sex determination"
            evidence=NAS;TAS] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
            [GO:0007281 "germ cell development" evidence=TAS] [GO:0007548 "sex
            differentiation" evidence=NAS;TAS] [GO:0017148 "negative regulation
            of translation" evidence=IMP;IDA;NAS;TAS] [GO:0048027 "mRNA 5'-UTR
            binding" evidence=IDA;TAS] [GO:0000900 "translation repressor
            activity, nucleic acid binding" evidence=TAS] [GO:0000380
            "alternative mRNA splicing, via spliceosome" evidence=TAS]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=TAS] [GO:0003730 "mRNA 3'-UTR
            binding" evidence=IDA] [GO:0007224 "smoothened signaling pathway"
            evidence=IDA] [GO:0008083 "growth factor activity" evidence=IDA]
            [GO:0007446 "imaginal disc growth" evidence=IMP] [GO:0009994
            "oocyte differentiation" evidence=IDA] [GO:0043234 "protein
            complex" evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006546
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0043234 GO:GO:0008266
            GO:GO:0006355 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
            GO:GO:0006351 GO:GO:0048027 GO:GO:0003730 GO:GO:0007281
            GO:GO:0008083 GO:GO:0007548 GO:GO:0007224 GO:GO:0007131
            GO:GO:0009994 GO:GO:0000900 GO:GO:0048025 GO:GO:0019099
            GO:GO:0000380 GO:GO:0007541 GO:GO:0007446 GO:GO:0007549
            GO:GO:0019101 GeneTree:ENSGT00560000077064 EMBL:M23635 EMBL:M23636
            EMBL:M59447 EMBL:M59448 EMBL:BT003583 EMBL:BT099922 EMBL:BT100240
            EMBL:BT120392 EMBL:S88324 EMBL:D84425 PIR:A31639 PIR:A39725
            RefSeq:NP_001027062.1 RefSeq:NP_001027063.1 RefSeq:NP_001027064.1
            RefSeq:NP_001027065.1 RefSeq:NP_001027066.1 RefSeq:NP_001162686.1
            RefSeq:NP_001162687.1 RefSeq:NP_001162688.1 RefSeq:NP_001162689.1
            RefSeq:NP_001162690.1 RefSeq:NP_001162691.1 RefSeq:NP_001245559.1
            RefSeq:NP_524791.3 RefSeq:NP_727160.2 RefSeq:NP_727161.2
            RefSeq:NP_727162.2 RefSeq:NP_727163.2 RefSeq:NP_727164.2
            RefSeq:NP_727165.2 RefSeq:NP_727166.2 RefSeq:NP_727167.2
            RefSeq:NP_727168.1 UniGene:Dm.4502 PDB:1B7F PDB:1SXL PDB:2SXL
            PDB:3SXL PDBsum:1B7F PDBsum:1SXL PDBsum:2SXL PDBsum:3SXL
            ProteinModelPortal:P19339 SMR:P19339 IntAct:P19339 MINT:MINT-276991
            STRING:P19339 PaxDb:P19339 PRIDE:P19339 EnsemblMetazoa:FBtr0331255
            EnsemblMetazoa:FBtr0331262 EnsemblMetazoa:FBtr0331268
            GeneID:3772180 KEGG:dme:Dmel_CG18350 CTD:3772180
            FlyBase:FBgn0003659 eggNOG:NOG249299 InParanoid:P19339 OMA:HRDGAME
            OrthoDB:EOG4F4QSS EvolutionaryTrace:P19339 NextBio:852740
            Bgee:P19339 GermOnline:CG18350 TIGRFAMs:TIGR01659 Uniprot:P19339
        Length = 354

 Score = 225 (84.3 bits), Expect = 1.6e-18, P = 1.6e-18
 Identities = 63/206 (30%), Positives = 97/206 (47%)

Query:    35 PITTNNVQHN------GSPGTPT--GPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPII 86
             P+ +NN  +N      GS G+       + S TNL +  L QD TD++L  +    GPI 
Sbjct:    93 PMASNNSLNNLCGLSLGSGGSDDLMNDPRASNTNLIVNYLPQDMTDRELYALFRAIGPIN 152

Query:    87 STKAILDKTTNKCRGYGFVDFESGGYALAAVKAL-----QDKGIHAQMARQQEQD--PTN 139
             + + + D  T    GY FVDF S   +  A+K L     ++K +    AR   +    TN
Sbjct:   153 TCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTN 212

Query:   140 LYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLF 198
             LY+ NLP    +  L+++  KY ++V   ILRD      +GV F R   +++  + I   
Sbjct:   213 LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISAL 272

Query:   199 NGSTLPGSKEPLLVKFADSGLKKRGA 224
             N     G  +PL V+ A+   K + A
Sbjct:   273 NNVIPEGGSQPLSVRLAEEHGKAKAA 298


>ASPGD|ASPL0000051893 [details] [associations]
            symbol:AN0592 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330
            GO:GO:0003676 ProteinModelPortal:C8VSB4
            EnsemblFungi:CADANIAT00002082 HOGENOM:HOG000216560 OMA:FESCENC
            Uniprot:C8VSB4
        Length = 608

 Score = 231 (86.4 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 59/173 (34%), Positives = 96/173 (55%)

Query:    59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFV---DFES------ 109
             TN+YIRG   +TTD+ L    S++G I   KAI+D  T  C+G+GFV   +FES      
Sbjct:   271 TNVYIRGFLPETTDEMLHAYASRFGKIDRCKAIVDLDTGLCKGFGFVQYFNFESCENCIR 330

Query:   110 GGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRI 169
             G + L    +   K  ++++   +++  TN+Y  N+P+++ E DL      Y  VVS +I
Sbjct:   331 GFFYLGYQASFAQKSRNSRLKDLEDRSSTNIYCTNIPIDWTEADLRRHFEPY-RVVSEKI 389

Query:   170 LRDNNN-TSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKK 221
              RD     SK VGFAR E+++  ++++  F+        + LL++FAD+  +K
Sbjct:   390 SRDEKTGVSKEVGFARFETREIAEKVLAEFHNVVAEDGVK-LLLRFADTKAQK 441


>FB|FBgn0024987 [details] [associations]
            symbol:ssx "sister-of-Sex-lethal" species:7227 "Drosophila
            melanogaster" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0042742 "defense response to bacterium"
            evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 EMBL:AE014298 GO:GO:0042742
            GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339 EMBL:AL023893
            SMR:O76876 IntAct:O76876 MINT:MINT-315293 STRING:O76876
            UCSC:CG3056-RA FlyBase:FBgn0024987 eggNOG:NOG321849
            InParanoid:O76876 OrthoDB:EOG4M37RG NextBio:771866 Uniprot:O76876
        Length = 485

 Score = 225 (84.3 bits), Expect = 5.7e-18, P = 5.7e-18
 Identities = 57/179 (31%), Positives = 91/179 (50%)

Query:    54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYA 113
             ++ S TNL I  L QD TD++L N+ S  GPI + K + D  T    GYGFVD+++   +
Sbjct:    88 DRTSATNLIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDS 147

Query:   114 LAAVKAL-----QDKGIHAQMARQQEQD--PTNLYIANLPLNFKECDLESLLAKYVTVVS 166
               A++ L     ++K +    AR   Q    TNLY+ NL  N  +  L+ + + Y  +V 
Sbjct:   148 EDAIQKLNGFYVRNKRLKVSYARPGGQSIKDTNLYVINLSRNINDDMLDRIFSPYGLIVQ 207

Query:   167 TRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRGA 224
               ILRD      +GV F R   +++  + I+  N +   G  +P+ V+ A+   K + A
Sbjct:   208 RNILRDKLTGRPRGVAFVRYNKREEAQEAIKALNNTVPEGGSQPIWVRLAEEHGKAKAA 266


>UNIPROTKB|B1AM48 [details] [associations]
            symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
            TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
            HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
            Ensembl:ENST00000440102 Uniprot:B1AM48
        Length = 189

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 58/174 (33%), Positives = 88/174 (50%)

Query:    35 PITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDK 94
             P T NN   N S    +G  + SKTNL +  L Q+ T ++L ++    G I S K + DK
Sbjct:    18 PTTINN---NCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDK 74

Query:    95 TTNKCRGYGFVDFESGGYALAAVKAL-----QDKGIHAQMARQQEQD--PTNLYIANLPL 147
              T +  GYGFV++     A  A+  L     Q K I    AR         NLY++ LP 
Sbjct:    75 ITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPK 134

Query:   148 NFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNG 200
                + +LE L ++Y  ++++RIL D     S+GVGF R + + + ++ I+  NG
Sbjct:   135 TMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188


>ZFIN|ZDB-GENE-000210-17 [details] [associations]
            symbol:hug "HuG" species:7955 "Danio rerio"
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-000210-17 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 EMBL:CR550302 IPI:IPI00998450
            ProteinModelPortal:F1QUX1 Ensembl:ENSDART00000122728
            ArrayExpress:F1QUX1 Bgee:F1QUX1 Uniprot:F1QUX1
        Length = 368

 Score = 209 (78.6 bits), Expect = 1.3e-16, P = 1.3e-16
 Identities = 57/175 (32%), Positives = 89/175 (50%)

Query:    57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDK--------TTNKCRGYGFVDFE 108
             +KTNL I  L Q+ + ++L ++ S  G + S K I DK        T     GYGFV++ 
Sbjct:    54 AKTNLIINYLPQNMSQEELRSLFSSIGEVESAKLIRDKMAGMSAHHTLGHSLGYGFVNYV 113

Query:   109 SGGYALAAVKAL-----QDKGIHAQMARQQEQD--PTNLYIANLPLNFKECDLESLLAKY 161
             +   A  A+  L     Q K I    AR         NLYI+ LP    + ++E +  +Y
Sbjct:   114 NPSDAERAINTLNGLRLQSKTIKVSYARPSSDGIKDANLYISGLPKTMTQKNVEDMFTQY 173

Query:   162 VTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFA 215
               ++++RIL D  +  S+GV F R + + + ++ I+  NGS   G+ EP+ VKFA
Sbjct:   174 GRIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIKDLNGSKPSGASEPITVKFA 228

 Score = 113 (44.8 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
 Identities = 23/65 (35%), Positives = 39/65 (60%)

Query:    56 LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALA 115
             +   NLYI GL +  T K++ +M +QYG II+++ ++D+ +   RG  F+ F+    A  
Sbjct:   147 IKDANLYISGLPKTMTQKNVEDMFTQYGRIINSRILVDQASGLSRGVAFIRFDKRSEAEE 206

Query:   116 AVKAL 120
             A+K L
Sbjct:   207 AIKDL 211

 Score = 72 (30.4 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
 Identities = 22/79 (27%), Positives = 37/79 (46%)

Query:   140 LYIANLPLNFKECDLESLLAKYVTVVSTRILRD-NNNTSKGVGFARLESKDKCDQMIQLF 198
             +++ NL  +  E  L  +   +  V + +++RD N +  KG GF  + + ++    I   
Sbjct:   288 IFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTSKCKGFGFVTMTNYEEAAMAISSL 347

Query:   199 NGSTLPGSKEPLLVKFADS 217
             NG  L G K  L V F  S
Sbjct:   348 NGYRL-GDKV-LQVSFKSS 364


>FB|FBgn0038345 [details] [associations]
            symbol:CG5213 species:7227 "Drosophila melanogaster"
            [GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0022008
            GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
            GeneTree:ENSGT00560000077064 EMBL:AY089405 RefSeq:NP_650473.1
            UniGene:Dm.5039 SMR:Q9VF55 STRING:Q9VF55 EnsemblMetazoa:FBtr0083148
            GeneID:41892 KEGG:dme:Dmel_CG5213 UCSC:CG5213-RA
            FlyBase:FBgn0038345 eggNOG:NOG294033 InParanoid:Q9VF55 OMA:RRERTND
            OrthoDB:EOG4DNCM8 GenomeRNAi:41892 NextBio:826136 Uniprot:Q9VF55
        Length = 251

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 59/185 (31%), Positives = 87/185 (47%)

Query:    50 PTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFES 109
             P  P    KTNL +  L QD T+ +L  + S++G I   K I  + T     YGFVD+ S
Sbjct:    32 PPLPNLRMKTNLILNYLPQDMTESELHRLFSKFGEIRKAKIIRHRRTGISCCYGFVDYVS 91

Query:   110 GGYALAAVKAL-----QDKGIHAQMARQQEQDPTN--LYIANLPLNFKECDLESLLAKYV 162
                A AAV  +     + K +    AR  E + T+  LY+ NLP    E  +  L A Y 
Sbjct:    92 ERQAAAAVNGMDGYETRGKRLKVAFARPSEYESTSSSLYVGNLPTYMDEKKVRELFATYG 151

Query:   163 TVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKK 221
              +V   +LR   NN S+GV F + E     +      +   + G+  PL VKF +   +K
Sbjct:   152 NIVDVNLLRHKFNNRSRGVAFLQFELVRDAEVAKYGMDRYMIEGASRPLTVKFVER--EK 209

Query:   222 RGAGA 226
             +G+ +
Sbjct:   210 KGSSS 214


>DICTYBASE|DDB_G0274523 [details] [associations]
            symbol:DDB_G0274523 "RNA recognition motif-containing
            protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 dictyBase:DDB_G0274523 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000012 eggNOG:COG0724
            RefSeq:XP_644081.1 ProteinModelPortal:Q86HL7 PRIDE:Q86HL7
            EnsemblProtists:DDB0233759 GeneID:8619510 KEGG:ddi:DDB_G0274523
            InParanoid:Q86HL7 OMA:QNNHHDP Uniprot:Q86HL7
        Length = 904

 Score = 215 (80.7 bits), Expect = 2.2e-16, P = 2.2e-16
 Identities = 56/194 (28%), Positives = 98/194 (50%)

Query:    39 NNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNK 98
             NN  +N S        +  +TN++++ L  +  D+DL N+ S+YG ++S+K ++D   N 
Sbjct:    89 NNNNNNNSVNNKELELERDQTNVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPKGNS 148

Query:    99 CRGYGFVDFESGGYALAAVKAL-----QDKGIHAQMAR-----QQEQDPTNLYIANLPLN 148
               GYGFV F S   + AA++ L     Q+K +  +++        +    NL+I  LP +
Sbjct:   149 Y-GYGFVRFSSPQESAAAIEELDGYQYQNKKLLCRLSNLYTNLNSKYPSNNLFIKPLPYD 207

Query:   149 FKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTL-PGSK 207
               +  L  L   +  ++  +++ D+N  SK  GF R  S+    + I   NG  +   S 
Sbjct:   208 VTDDQLRKLFEPFGKIIECKVMLDHNGQSKFAGFVRFSSELDASKAIDAMNGVRINKDSG 267

Query:   208 EPLLVKFADSGLKK 221
              PL+VK+AD+  +K
Sbjct:   268 YPLVVKYADTEQQK 281


>TAIR|locus:2124261 [details] [associations]
            symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
            "translation initiation factor activity" evidence=ISS] [GO:0009651
            "response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
            "translational initiation" evidence=ISS] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
            GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
            EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
            EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
            UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
            STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
            EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
            TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
            ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
            Uniprot:P42731
        Length = 629

 Score = 178 (67.7 bits), Expect = 3.8e-11, Sum P(2) = 3.8e-11
 Identities = 45/154 (29%), Positives = 79/154 (51%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDF---ESGGYALAA 116
             N++I+ L +    K L +  S +G I+S K  +D ++ + +GYGFV +   ES   A+  
Sbjct:   125 NIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEK 183

Query:   117 VKA--LQDKGIHA-QMARQQEQDPT-------NLYIANLPLNFKECDLESLLAKYVTVVS 166
             +    L DK ++     R+QE+D T       N+Y+ NL  +  + DL++   +Y  + S
Sbjct:   184 LNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITS 243

Query:   167 TRILRDNNNTSKGVGFARLESKDKCDQMIQLFNG 200
               +++D    SKG GF   E+ D   + ++  NG
Sbjct:   244 AVVMKDGEGKSKGFGFVNFENADDAARAVESLNG 277

 Score = 166 (63.5 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
 Identities = 43/169 (25%), Positives = 79/169 (46%)

Query:    46 SPGTPTGPE--QLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYG 103
             +P T  G    Q   T+LY+  L  + TD  L +   Q G +++ +   D  T +  GYG
Sbjct:    21 APATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYG 80

Query:   104 FVDFESGGYALAAVKALQDKGIHAQMAR--QQEQDPT-------NLYIANLPLNFKECDL 154
             +V+F +   A  A++ L    ++ +  R     +DP+       N++I NL  +     L
Sbjct:    81 YVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKAL 140

Query:   155 ESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTL 203
                 + +  +VS ++  D++  SKG GF +  +++   + I+  NG  L
Sbjct:   141 HDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLL 189

 Score = 130 (50.8 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
 Identities = 34/98 (34%), Positives = 52/98 (53%)

Query:    59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVK 118
             TN+Y++ L + TTD DL N   +YG I S   + D    K +G+GFV+FE+   A  AV+
Sbjct:   215 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVE 273

Query:   119 ALQ-----DKGIHAQMARQQEQDPTNLYIANLPLNFKE 151
             +L      DK  +   A+++ +  T L +     N KE
Sbjct:   274 SLNGHKFDDKEWYVGRAQKKSERETELRV-RYEQNLKE 310

 Score = 127 (49.8 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
 Identities = 49/173 (28%), Positives = 77/173 (44%)

Query:   138 TNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQL 197
             +NLY+ NL  +  +  L+ + + + TV S++++RD N TSKG GF    + ++  + +  
Sbjct:   318 SNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQ 377

Query:   198 FNGSTLPGSKEPLLVKFADSGLKKR----------GAGAGGPNIYRGPGAEVRLWGRDSA 247
              +G  +  SK PL V  A     +R             A  P++  GP   V   G    
Sbjct:   378 LSGKMIE-SK-PLYVAIAQRKEDRRVRLQAQFSQVRPVAMQPSV--GPRMPVYPPGGPGI 433

Query:   248 DSQLAY-EHPMTPIPATIQY---QRFTAG--PGGTGHIPAGYTPWVPTQYVMP 294
               Q+ Y + P   IP    Y   Q+   G  PGG G +P+ + P V  Q   P
Sbjct:   434 GQQMFYGQAPPAMIPPQPGYGYQQQLVPGMRPGG-GPVPSFFMPMVQPQQQRP 485

 Score = 38 (18.4 bits), Expect = 3.8e-11, Sum P(2) = 3.8e-11
 Identities = 6/13 (46%), Positives = 9/13 (69%)

Query:   268 RFTAGPGGTGHIP 280
             R+  G GG+G +P
Sbjct:   516 RYPQGRGGSGDVP 528


>FB|FBgn0260400 [details] [associations]
            symbol:elav "embryonic lethal abnormal vision" species:7227
            "Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IDA;TAS]
            [GO:0015030 "Cajal body" evidence=IDA] [GO:0007417 "central nervous
            system development" evidence=IMP] [GO:0016070 "RNA metabolic
            process" evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
            [GO:0007399 "nervous system development" evidence=NAS] [GO:0008266
            "poly(U) RNA binding" evidence=IDA] [GO:0031441 "negative
            regulation of mRNA 3'-end processing" evidence=IDA] [GO:0003723
            "RNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0008266 GO:GO:0000166
            EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:AL022139
            GO:GO:0007417 GO:GO:0009790 GO:GO:0007281 GO:GO:0015030
            GO:GO:0000900 GO:GO:0031441 GO:GO:0007319 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 KO:K13208 EMBL:M21152 EMBL:AY051822
            PIR:A33130 RefSeq:NP_001014713.1 RefSeq:NP_001138142.1
            RefSeq:NP_001245447.1 RefSeq:NP_525033.1 UniGene:Dm.4473
            ProteinModelPortal:P16914 SMR:P16914 DIP:DIP-23700N IntAct:P16914
            MINT:MINT-1597597 STRING:P16914 PaxDb:P16914 PRIDE:P16914
            EnsemblMetazoa:FBtr0070091 EnsemblMetazoa:FBtr0307173 GeneID:31000
            KEGG:dme:Dmel_CG4262 CTD:31000 FlyBase:FBgn0260400 eggNOG:NOG256997
            InParanoid:Q7K7L9 OMA:DIGESKT PhylomeDB:P16914 GenomeRNAi:31000
            NextBio:771397 Bgee:P16914 GermOnline:CG4262 Uniprot:P16914
        Length = 483

 Score = 167 (63.8 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
 Identities = 40/126 (31%), Positives = 70/126 (55%)

Query:   101 GYGFVDFESGGYALAAVKAL-----QDKGIHAQMARQQEQ--DPTNLYIANLPLNFKECD 153
             GYGFV++     A  AV  L     Q+K I    AR         NLY++ LP    + +
Sbjct:   204 GYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPKTMTQQE 263

Query:   154 LESLLAKYVTVVSTRILRD--NNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLL 211
             LE++ A +  ++++RIL++  N+  +KGVGF R + +++  + I   NG+T     +P++
Sbjct:   264 LEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNGTTPSSCTDPIV 323

Query:   212 VKFADS 217
             VKF+++
Sbjct:   324 VKFSNT 329

 Score = 83 (34.3 bits), Expect = 0.00011, Sum P(2) = 0.00011
 Identities = 25/82 (30%), Positives = 40/82 (48%)

Query:   140 LYIANLPLNFKECDLESLLAKYVTVVSTRILRD-NNNTSKGVGFARLESKDKCDQMIQLF 198
             ++I NL    +E  L  L   +  V S +I++D   N  KG GF  + + D+    I+  
Sbjct:   404 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 463

Query:   199 NGSTLPGSKEPLLVKFADSGLK 220
             NG T+ G++  L V F  +  K
Sbjct:   464 NGYTM-GNRV-LQVSFKTNKAK 483

 Score = 82 (33.9 bits), Expect = 0.00011, Sum P(2) = 0.00011
 Identities = 21/69 (30%), Positives = 38/69 (55%)

Query:    54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTN--KCRGYGFVDFESGG 111
             + +   NLY+ GL +  T ++L  + + +G II+++ IL    N  + +G GF+ F+   
Sbjct:   243 DAIKGANLYVSGLPKTMTQQELEAIFAPFGAIITSR-ILQNAGNDTQTKGVGFIRFDKRE 301

Query:   112 YALAAVKAL 120
              A  A+ AL
Sbjct:   302 EATRAIIAL 310

 Score = 71 (30.1 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
 Identities = 19/58 (32%), Positives = 30/58 (51%)

Query:    38 TNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKT 95
             TN    +GS     G  + ++TNL +  L Q  T+ ++ ++ S  G I S K I DK+
Sbjct:   129 TNGNAGSGSQNGSNGSTE-TRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKS 185


>UNIPROTKB|F1SNK9 [details] [associations]
            symbol:ELAVL2 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AEMK01195641
            EMBL:CU407236 Ensembl:ENSSSCT00000005656 Uniprot:F1SNK9
        Length = 400

 Score = 192 (72.6 bits), Expect = 2.6e-13, P = 2.6e-13
 Identities = 69/231 (29%), Positives = 102/231 (44%)

Query:    71 TDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKAL-----QDKGI 125
             TD  L     ++ P+ S   +L K      GYGFV++     A  A+  L     Q K I
Sbjct:    95 TDSSLFE---KWRPLDSEVIVLGKGWQSL-GYGFVNYIDPKDAEKAINTLNGLRLQTKTI 150

Query:   126 HAQMARQQEQD--PTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGF 182
                 AR         NLY++ LP    + +LE L ++Y  ++++RIL D     S+GVGF
Sbjct:   151 KVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGF 210

Query:   183 ARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRGAGA-----GGPNI-YRGPG 236
              R + + + ++ I+  NG   PG+ EP+ VKFA++  +K            PN  Y GP 
Sbjct:   211 IRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPL 270

Query:   237 AEVRLWGRDSADSQLAYEHPMTPIPATIQYQRFTAGPGGTGHIPAGYTPWV 287
             A+     R      +AY       P TI      AG    GH   G+  +V
Sbjct:   271 AQQAQRFRLDNLLNMAYGVKSRFSPMTIDGMTSLAGINIPGHPGTGWCIFV 321

 Score = 122 (48.0 bits), Expect = 8.8e-09, Sum P(2) = 8.8e-09
 Identities = 30/87 (34%), Positives = 49/87 (56%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             NLY+ GL +  T K+L  + SQYG II+++ ++D+ T   RG GF+ F+     + A +A
Sbjct:   166 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDK---RIEAEEA 222

Query:   120 LQDKGIHAQMARQQEQDPTNLYIANLP 146
             +  KG++ Q       +P  +  AN P
Sbjct:   223 I--KGLNGQKP-PGATEPITVKFANNP 246

 Score = 92 (37.4 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
 Identities = 28/73 (38%), Positives = 38/73 (52%)

Query:    35 PITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDK 94
             P T NN   N S    +G  + SKTNL +  L Q+ T ++L ++    G I S K + DK
Sbjct:    28 PTTINN---NCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDK 84

Query:    95 TT-NKCRGYGFVD 106
              T N+ R Y F D
Sbjct:    85 ITGNQFREY-FTD 96

 Score = 76 (31.8 bits), Expect = 8.8e-09, Sum P(2) = 8.8e-09
 Identities = 18/65 (27%), Positives = 31/65 (47%)

Query:   140 LYIANLPLNFKECDLESLLAKYVTVVSTRILRD-NNNTSKGVGFARLESKDKCDQMIQLF 198
             +++ NL  +  E  L  +   +  V + +++RD N N  KG GF  + + D+    I   
Sbjct:   319 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 378

Query:   199 NGSTL 203
             NG  L
Sbjct:   379 NGYRL 383


>UNIPROTKB|H9L019 [details] [associations]
            symbol:SF3B4 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0005689 "U12-type
            spliceosomal complex" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
            EMBL:AADN02044320 RefSeq:XP_423721.2 UniGene:Gga.51399
            ProteinModelPortal:H9L019 Ensembl:ENSGALT00000021786 GeneID:426042
            KEGG:gga:426042 Uniprot:H9L019
        Length = 418

 Score = 191 (72.3 bits), Expect = 4.3e-13, P = 4.3e-13
 Identities = 78/266 (29%), Positives = 116/266 (43%)

Query:    52 GP--EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDF-- 107
             GP  E+     +Y+ GL +  ++  L  +  Q GP+++T    D+ T + +GYGFV+F  
Sbjct:     4 GPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLS 63

Query:   108 -ESGGYALAAVKALQDKG----IHAQMARQQEQDP-TNLYIANLPLNFKECDLESLLAKY 161
              E   YA+  +  ++  G    ++   A  +  D   N++I NL     E  L    + +
Sbjct:    64 EEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAF 123

Query:   162 VTVVST-RILRD-NNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGL 219
               ++ T +I+RD +   SKG  F    S D  D  I+  NG  L     P+ V +A    
Sbjct:   124 GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL--CNRPITVSYA---F 178

Query:   220 KKRGAGAGGPNIYRGPGAEVRLWGRDSADSQLAYEHPM---TPIPATIQYQRFTA-GPGG 275
             KK   G        G  AE RL    +  SQ    H +    P P ++     TA GPG 
Sbjct:   179 KKDSKGER-----HGSAAE-RLLAAQNPLSQADRPHQLFADAPPPPSVPTPVVTALGPGV 232

Query:   276 T--GHIPAG-YTPWVPTQYVMPAPHM 298
             T  G  P G + P VP    MP P M
Sbjct:   233 TPPGLPPPGSFPPPVPPPGAMP-PGM 257


>UNIPROTKB|K7EQ02 [details] [associations]
            symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
            Ensembl:ENST00000592453 Uniprot:K7EQ02
        Length = 225

 Score = 167 (63.8 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 42/151 (27%), Positives = 71/151 (47%)

Query:    51 TGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESG 110
             +G +++ K  L++ GL   TT + L +  SQYG ++    + DKTTN+ RG+GFV F+  
Sbjct:     4 SGADEIGK--LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61

Query:   111 ---GYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVST 167
                G  LA+     D G + +  R        +++  +P N  E +L     K+  V   
Sbjct:    62 NCVGTVLASRPHTLD-GRNQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEV 120

Query:   168 RILRD-NNNTSKGVGFARLESKDKCDQMIQL 197
              ++ D      +G GF   E +   DQ + +
Sbjct:   121 VMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 151


>DICTYBASE|DDB_G0291486 [details] [associations]
            symbol:DDB_G0291486 "putative splicing regulator"
            species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008150
            "biological_process" evidence=ND] [GO:0005575 "cellular_component"
            evidence=ND] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 dictyBase:DDB_G0291486 EMBL:AAFI02000177
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG251494
            RefSeq:XP_635247.1 ProteinModelPortal:Q54EJ3
            EnsemblProtists:DDB0233674 GeneID:8628193 KEGG:ddi:DDB_G0291486
            InParanoid:Q54EJ3 OMA:PMGNGMN Uniprot:Q54EJ3
        Length = 489

 Score = 184 (69.8 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 50/173 (28%), Positives = 89/173 (51%)

Query:    59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVK 118
             T L++  + +   ++++ N+ +    I S   I +KTTN+ +G  FV   S   A  A++
Sbjct:     3 TKLFVGQIPKSFNEEEIKNLFTNIANIESVSLIKNKTTNEPQGCAFVSVPSREEADRAIE 62

Query:   119 ALQD----KGI--HAQMA---RQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRI 169
              L +    +G+  + Q+     +QE+  + L++  LP +++E  +  L   +  V    I
Sbjct:    63 QLHNSKKFQGVLNNLQVKYADSEQEKLASKLFVGMLPRSYEEEQIRELFEPHGVVEDICI 122

Query:   170 LRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKR 222
             LR  N+ SKG GF + ++++     I   NG  L GS  PL+VKFAD+   K+
Sbjct:   123 LRGPNSESKGCGFIKFDNRESALSAIATLNGMKLDGSPNPLVVKFADTEKDKK 175


>TAIR|locus:2058573 [details] [associations]
            symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
            "translation initiation factor activity" evidence=ISS] [GO:0046686
            "response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
            GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
            KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
            EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
            UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
            STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
            EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
            TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
            ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
        Length = 662

 Score = 155 (59.6 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 43/154 (27%), Positives = 75/154 (48%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAV-- 117
             NL+++ L +   +K L    S  G I+S K   D    + RGYGFV F++   A  A+  
Sbjct:   135 NLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHM-GQSRGYGFVQFDTEDSAKNAIEK 193

Query:   118 ---KALQDKGIHA-QMARQQEQDP-------TNLYIANLPLNFKECDLESLLAKYVTVVS 166
                K L DK I      R++E++        TN+Y+ NL     + +L++   +Y ++ S
Sbjct:   194 LNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISS 253

Query:   167 TRILRDNNNTSKGVGFARLESKDKCDQMIQLFNG 200
               ++RD +  S+  GF   E+ +   + ++  NG
Sbjct:   254 AVVMRDGDGKSRCFGFVNFENPEDAARAVEALNG 287

 Score = 147 (56.8 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 38/153 (24%), Positives = 72/153 (47%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             +LY+  L  + TD  L +  ++   ++S +   D  TN   GYG+V++ +   A  A++ 
Sbjct:    47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106

Query:   120 LQDKGIHAQMAR--QQEQDPT-------NLYIANLPLNFKECDLESLLAKYVTVVSTRIL 170
             L    ++ +M R     +D +       NL++ NL  +     L    +   T+VS ++ 
Sbjct:   107 LNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVA 166

Query:   171 RDNNNTSKGVGFARLESKDKCDQMIQLFNGSTL 203
              D+   S+G GF + +++D     I+  NG  L
Sbjct:   167 TDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVL 199

 Score = 119 (46.9 bits), Expect = 7.9e-12, Sum P(2) = 7.9e-12
 Identities = 27/87 (31%), Positives = 45/87 (51%)

Query:   136 DPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMI 195
             D  NLY+ NL     +  L  L A++ T+ S +++RD + TSKG GF    +  +  +++
Sbjct:   326 DGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVL 385

Query:   196 QLFNGSTLPGSKEPLLVKFADSGLKKR 222
                NG  + G  +PL V  A    ++R
Sbjct:   386 NEMNGKMVGG--KPLYVALAQRKEERR 410

 Score = 115 (45.5 bits), Expect = 7.9e-12, Sum P(2) = 7.9e-12
 Identities = 26/70 (37%), Positives = 42/70 (60%)

Query:    54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYA 113
             +++  TN+Y++ L++ TTD +L     QYG I S+  ++     K R +GFV+FE+   A
Sbjct:   220 DKMKFTNVYVKNLSEATTDDELKTTFGQYGSI-SSAVVMRDGDGKSRCFGFVNFENPEDA 278

Query:   114 LAAVKALQDK 123
               AV+AL  K
Sbjct:   279 ARAVEALNGK 288


>UNIPROTKB|Q1JQ73 [details] [associations]
            symbol:elavl1-a "ELAV-like protein 1-A" species:8355
            "Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005938
            "cell cortex" evidence=IDA] [GO:0007369 "gastrulation"
            evidence=IMP] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
            [GO:0008298 "intracellular mRNA localization" evidence=IMP]
            [GO:0030529 "ribonucleoprotein complex" evidence=IDA;IPI]
            [GO:0031440 "regulation of mRNA 3'-end processing" evidence=IC]
            [GO:0048255 "mRNA stabilization" evidence=IC;IGI] [GO:0051259
            "protein oligomerization" evidence=IDA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
            GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
            KO:K13208 EMBL:U17596 EMBL:BC116459 PIR:I51675
            RefSeq:NP_001084078.1 UniGene:Xl.49136 ProteinModelPortal:Q1JQ73
            SMR:Q1JQ73 MINT:MINT-274235 PRIDE:Q1JQ73 GeneID:399292
            KEGG:xla:399292 CTD:399292 Xenbase:XB-GENE-6254178 GO:GO:0031440
            Uniprot:Q1JQ73
        Length = 337

 Score = 178 (67.7 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 42/123 (34%), Positives = 64/123 (52%)

Query:   101 GYGFVDFESGGYALAAVKAL-----QDKGIHAQMARQQEQD--PTNLYIANLPLNFKECD 153
             GYGFV++ +   A  A+  L     Q K I    AR   +     NLYI+ LP    + D
Sbjct:    73 GYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSESIKDANLYISGLPRTMTQKD 132

Query:   154 LESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLV 212
             +E +   +  ++++R+L D     S+GV F R + + + ++ I  FNG   PGS EP+ V
Sbjct:   133 VEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITV 192

Query:   213 KFA 215
             KFA
Sbjct:   193 KFA 195

 Score = 108 (43.1 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
 Identities = 22/64 (34%), Positives = 36/64 (56%)

Query:    54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYA 113
             E +   NLYI GL +  T KD+ +M   +G II+++ ++D+ T   RG  F+ F+    A
Sbjct:   112 ESIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEA 171

Query:   114 LAAV 117
               A+
Sbjct:   172 EEAI 175

 Score = 76 (31.8 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
 Identities = 23/79 (29%), Positives = 37/79 (46%)

Query:   140 LYIANLPLNFKECDLESLLAKYVTVVSTRILRD-NNNTSKGVGFARLESKDKCDQMIQLF 198
             +++ NL  +  E  L  +   +  V + +++RD N N  KG GF  + + ++    I   
Sbjct:   257 IFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 316

Query:   199 NGSTLPGSKEPLLVKFADS 217
             NG  L G K  L V F  S
Sbjct:   317 NGYRL-GDKT-LQVSFKTS 333


>UNIPROTKB|Q4VY17 [details] [associations]
            symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
            EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
            IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
            Ensembl:ENST00000537323 Uniprot:Q4VY17
        Length = 330

 Score = 176 (67.0 bits), Expect = 1.8e-11, P = 1.8e-11
 Identities = 45/161 (27%), Positives = 83/161 (51%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I+ L     +K L +  S +G I+S K   D+  +  RG+GFV FE+   A  A+  
Sbjct:   100 NIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDE--HGSRGFGFVHFETHEAAQQAINT 157

Query:   120 -----LQDKGI---HAQMARQQEQDP-------TNLYIANLPLNFKECDLESLLAKYVTV 164
                  L D+ +   H +  R++E +        TN+Y+ NLP++  E  L+ L +++  +
Sbjct:   158 MNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKM 217

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPG 205
             +S +++RDN+  S+  GF   E  ++  + +   NG  + G
Sbjct:   218 LSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSG 258

 Score = 136 (52.9 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 40/157 (25%), Positives = 69/157 (43%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             +LY+  L  D T+  L    S  GPI+S +   D  T +  GY +++F+    A  A+  
Sbjct:    12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71

Query:   120 LQDKGIHAQMAR--QQEQDPT-------NLYIANLPLNFKECDLESLLAKYVTVVSTRIL 170
             +  + +  Q  R    ++DP        N++I NL  +     L    + +  ++S ++ 
Sbjct:    72 MNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVA 131

Query:   171 RDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSK 207
              D +  S+G GF   E+ +   Q I   NG  L   K
Sbjct:   132 CDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRK 167


>RGD|1563142 [details] [associations]
            symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
            GeneTree:ENSGT00640000091232 IPI:IPI00778604
            ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
            UCSC:RGD:1563142 Uniprot:D3ZAS7
        Length = 607

 Score = 172 (65.6 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
 Identities = 43/161 (26%), Positives = 83/161 (51%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I+ L     +K L +  S +G I+S+K + ++  +  RG+GFV FE+   A  A+  
Sbjct:   100 NIFIKNLENSIDNKALYDTFSTFGSILSSKVVYNE--HGSRGFGFVHFETHEAAQKAINT 157

Query:   120 -----LQDKGI---HAQMARQQEQDP-------TNLYIANLPLNFKECDLESLLAKYVTV 164
                  L D+ +   H +  +++E +        TN+Y+ NL ++  E  L+ L +++   
Sbjct:   158 MNGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKT 217

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPG 205
              S +++RD+N  S+G GF   E  ++  + +   NG  + G
Sbjct:   218 QSVKVMRDSNGQSRGFGFINFEKHEEAQKAVDHMNGKEVSG 258

 Score = 143 (55.4 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
 Identities = 51/189 (26%), Positives = 85/189 (44%)

Query:    57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAA 116
             S ++LY+  L  D T+  L  M S  G I+S +   D  T +  GY +++F+    A  A
Sbjct:     9 SLSSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERA 68

Query:   117 VKALQDKGIHAQMAR--QQEQDPT-------NLYIANLPLNFKECDLESLLAKYVTVVST 167
             +  +  + I  Q  R     +DP        N++I NL  +     L    + + +++S+
Sbjct:    69 LDTMNFEMIKGQPIRIMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILSS 128

Query:   168 RILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKR---GA 224
             +++  N + S+G GF   E+ +   + I   NG  L   K  + V    S  K+    GA
Sbjct:   129 KVVY-NEHGSRGFGFVHFETHEAAQKAINTMNGMLLNDRK--VFVGHFKSRQKREAELGA 185

Query:   225 GA-GGPNIY 232
              A G  NIY
Sbjct:   186 RALGFTNIY 194

 Score = 112 (44.5 bits), Expect = 3.6e-10, Sum P(3) = 3.6e-10
 Identities = 25/78 (32%), Positives = 42/78 (53%)

Query:    52 GPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGG 111
             G   L  TN+Y++ L  D  ++ L ++ SQ+G   S K + D +  + RG+GF++FE   
Sbjct:   184 GARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRD-SNGQSRGFGFINFEKHE 242

Query:   112 YALAAVKALQDKGIHAQM 129
              A  AV  +  K +  Q+
Sbjct:   243 EAQKAVDHMNGKEVSGQL 260

 Score = 97 (39.2 bits), Expect = 3.6e-10, Sum P(3) = 3.6e-10
 Identities = 24/85 (28%), Positives = 44/85 (51%)

Query:   131 RQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDK 190
             RQ      NLY+ NL  +  +  L+ + + Y  + S +++ ++++ SKG GF    S ++
Sbjct:   287 RQNRYQGVNLYVKNLDDSINDDRLKEVFSTYGVITSAKVMTESSH-SKGFGFVCFSSPEE 345

Query:   191 CDQMIQLFNGSTLPGSKEPLLVKFA 215
               + +   NG  + G+K PL V  A
Sbjct:   346 ATKAVTEMNGRIV-GTK-PLYVALA 368

 Score = 46 (21.3 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
 Identities = 7/17 (41%), Positives = 11/17 (64%)

Query:   288 PTQYVMPAPHMSQVEVL 304
             PT Y++PA H S  + +
Sbjct:   397 PTSYLLPAVHQSTTQTM 413

 Score = 43 (20.2 bits), Expect = 7.2e-10, Sum P(3) = 7.2e-10
 Identities = 15/36 (41%), Positives = 18/36 (50%)

Query:   246 SADSQLAYEHPMTPIPATIQYQRFTAGPGGTGH-IP 280
             S+ SQ + + P T     I  Q  T GPGG G  IP
Sbjct:   461 SSASQASSQVPHTQRVVNIGTQ--TTGPGGEGSCIP 494


>UNIPROTKB|Q4VXU2 [details] [associations]
            symbol:PABPC1L "Polyadenylate-binding protein 1-like"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
            HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
            HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
            UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
            IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
            PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
            Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
            GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
            PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
            GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
            CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
        Length = 614

 Score = 176 (67.0 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
 Identities = 45/161 (27%), Positives = 83/161 (51%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I+ L     +K L +  S +G I+S K   D+  +  RG+GFV FE+   A  A+  
Sbjct:   100 NIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDE--HGSRGFGFVHFETHEAAQQAINT 157

Query:   120 -----LQDKGI---HAQMARQQEQDP-------TNLYIANLPLNFKECDLESLLAKYVTV 164
                  L D+ +   H +  R++E +        TN+Y+ NLP++  E  L+ L +++  +
Sbjct:   158 MNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKM 217

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPG 205
             +S +++RDN+  S+  GF   E  ++  + +   NG  + G
Sbjct:   218 LSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSG 258

 Score = 136 (52.9 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
 Identities = 40/157 (25%), Positives = 69/157 (43%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             +LY+  L  D T+  L    S  GPI+S +   D  T +  GY +++F+    A  A+  
Sbjct:    12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71

Query:   120 LQDKGIHAQMAR--QQEQDPT-------NLYIANLPLNFKECDLESLLAKYVTVVSTRIL 170
             +  + +  Q  R    ++DP        N++I NL  +     L    + +  ++S ++ 
Sbjct:    72 MNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVA 131

Query:   171 RDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSK 207
              D +  S+G GF   E+ +   Q I   NG  L   K
Sbjct:   132 CDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRK 167

 Score = 106 (42.4 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
 Identities = 24/78 (30%), Positives = 43/78 (55%)

Query:    52 GPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGG 111
             G   L  TN+Y++ L  D  ++ L ++ SQ+G ++S K + D + +  R +GFV+FE   
Sbjct:   184 GARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHS-RCFGFVNFEKHE 242

Query:   112 YALAAVKALQDKGIHAQM 129
              A  AV  +  K +  ++
Sbjct:   243 EAQKAVVHMNGKEVSGRL 260

 Score = 84 (34.6 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
 Identities = 23/85 (27%), Positives = 40/85 (47%)

Query:   131 RQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDK 190
             R +     NLY+ NL  +  +  L    + Y  + S +++ +  + SKG GF    S ++
Sbjct:   287 RLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGH-SKGFGFVCFSSPEE 345

Query:   191 CDQMIQLFNGSTLPGSKEPLLVKFA 215
               + +   NG  + G+K PL V  A
Sbjct:   346 ATKAVTEMNGRIV-GTK-PLYVALA 368

 Score = 41 (19.5 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
 Identities = 19/60 (31%), Positives = 24/60 (40%)

Query:   229 PNIYRGPGAEVRLWGRDSADSQLAYEHPMTPIPATIQYQRFTAGPGGTGHIPAGYTPWVP 288
             P + R P A +       A +Q+    P T   A I  Q  T GP G G    G  P +P
Sbjct:   451 PVVPRRPPAHIS--SVRQASTQVPRTVPHTQRVANIGTQ--TTGPSGVGCCTPG-RPLLP 505


>TAIR|locus:2199700 [details] [associations]
            symbol:PAB3 "poly(A) binding protein 3" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
            "translation initiation factor activity" evidence=ISS] [GO:0006397
            "mRNA processing" evidence=IGI] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
            EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
            RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
            SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
            GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
            OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
            Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
        Length = 660

 Score = 179 (68.1 bits), Expect = 3.7e-11, P = 3.7e-11
 Identities = 50/161 (31%), Positives = 76/161 (47%)

Query:    58 KTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAV 117
             K N++I+ L     +K L    S +G I+S K  +D  T + +GYGFV FE    A AA+
Sbjct:   135 KGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAI 193

Query:   118 KALQ-----DKGIHA-QMARQQEQ--D---PT----NLYIANLPLNFKECDLESLLAKYV 162
               L      DK +      R+QE+  D   PT    N+Y+ NLP    E +L     K+ 
Sbjct:   194 DKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFG 253

Query:   163 TVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTL 203
              + S  ++RD +  S+  GF   E  +     ++  NG +L
Sbjct:   254 VISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISL 294

 Score = 121 (47.7 bits), Expect = 0.00019, P = 0.00019
 Identities = 41/186 (22%), Positives = 77/186 (41%)

Query:    59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVK 118
             ++LY   L    T+  L ++      ++S +   D+   +  GY +++F +   A  A++
Sbjct:    49 SSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQN-RRSLGYAYINFSNPNDAYRAME 107

Query:   119 ALQDKGIHAQMAR--QQEQDPT-------NLYIANLPLNFKECDLESLLAKYVTVVSTRI 169
             AL    +  +  R     +DP+       N++I NL  +     L    + + T++S ++
Sbjct:   108 ALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKV 167

Query:   170 LRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRGAGAGGP 229
               D    SKG GF + E ++     I   NG  L   K+  +  F     + R      P
Sbjct:   168 AMDVTGRSKGYGFVQFEKEESAQAAIDKLNGM-LMNDKQVFVGHFIRRQERARDENTPTP 226

Query:   230 ---NIY 232
                N+Y
Sbjct:   227 RFTNVY 232


>UNIPROTKB|G4NH06 [details] [associations]
            symbol:MGG_03973 "Splicing factor 3B subunit 4"
            species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:CM001236 KO:K12831 RefSeq:XP_003719883.1
            EnsemblFungi:MGG_03973T0 GeneID:2677428 KEGG:mgr:MGG_03973
            Uniprot:G4NH06
        Length = 407

 Score = 175 (66.7 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 68/246 (27%), Positives = 108/246 (43%)

Query:    54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDF---ESG 110
             EQ  +  +Y+  L +   +  +  M +Q GP+++    +D+ +   +GYGFV+F   ES 
Sbjct:     7 EQNKEATVYVGNLDERFGEALMWEMMTQMGPVVNLHMPMDRVSRTHQGYGFVEFDTPESA 66

Query:   111 GYALAAVKALQ--DKGIHAQMARQQEQDPTN----LYIANLPLNFKECDLESLLAKYVTV 164
              YA  A+  ++   K I    A   +Q        L++ NL     E  L    +++  +
Sbjct:    67 DYAARALNGIRVFGKVIRVNKASADKQKTAEIGAELFVNNLDPQVDEKILFDTFSRFGQL 126

Query:   165 VST-RILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRG 223
             V+   ++RD NN SKG GF   +S +  D      NG  L  SK+ + V++A    KK G
Sbjct:   127 VTPPNVVRDANNISKGYGFVNFDSFEASDTARDTMNGQYLL-SKQ-ITVEYA---YKKDG 181

Query:   224 AGAGGPNIYRGPGAEVRLWGRDSADSQLAYEHPMTPIPATIQYQRFTAGPGGTGHIPAGY 283
              G        G  AE +L       + +  + P+ P      Y    + P  T   PAG 
Sbjct:   182 KGER-----HGDEAERKLAAEGKKHNIVPEQQPLPPA-----Y--LMSAPAST---PAGA 226

Query:   284 TPWVPT 289
             TP  PT
Sbjct:   227 TPATPT 232


>ZFIN|ZDB-GENE-020419-22 [details] [associations]
            symbol:sf3b4 "splicing factor 3b, subunit 4"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-020419-22 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AY099515
            IPI:IPI00495328 UniGene:Dr.1505 ProteinModelPortal:Q8JGT1
            SMR:Q8JGT1 STRING:Q8JGT1 InParanoid:Q8JGT1 ArrayExpress:Q8JGT1
            Uniprot:Q8JGT1
        Length = 400

 Score = 174 (66.3 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 72/260 (27%), Positives = 108/260 (41%)

Query:    52 GP--EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDF-- 107
             GP  E+     +Y+ GL +  ++  L  +  Q GP+++T    D+ T + +GYGFV+F  
Sbjct:     4 GPISERNQDAAVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLS 63

Query:   108 -ESGGYALAAVKALQDKG----IHAQMARQQEQDP-TNLYIANLPLNFKECDLESLLAKY 161
              E   YA+  +  ++  G    ++   A  +  D   N++I NL     E  L    + +
Sbjct:    64 EEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAF 123

Query:   162 VTVVST-RILRD-NNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGL 219
               ++ T +I+RD +   SKG  F    S D  D  I+  NG  L     P+ V +A    
Sbjct:   124 GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL--CNRPITVSYA---F 178

Query:   220 KKRGAGAG-GPNIYRGPGAEVRLWGRDSADSQLAYEHPMTPIPATIQYQRFTAGPGGTGH 278
             KK   G   G    R   A+  L   D      A   P   +P  +      A P   G 
Sbjct:   179 KKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSMPTPVMTALGAAMPI-PGM 237

Query:   279 IPAGYTPWVPTQYVMPAPHM 298
              P G  P VP    MP P M
Sbjct:   238 PPPGAFPPVPPPGTMP-PGM 256


>TAIR|locus:2012161 [details] [associations]
            symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
            "translation initiation factor activity" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
            evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
            biosynthetic process" evidence=RCA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
            GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
            EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
            RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
            UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
            SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
            ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
            GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
            OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
        Length = 671

 Score = 177 (67.4 bits), Expect = 6.7e-11, P = 6.7e-11
 Identities = 44/156 (28%), Positives = 75/156 (48%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I+ L +    K L    S +GPI+S K  +D +  + +GYGFV +++   A  A+  
Sbjct:   134 NIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPS-GQSKGYGFVQYDTDEAAQGAIDK 192

Query:   120 LQ-----DKGIHA-QMARQQEQDP-------TNLYIANLPLNFKECDLESLLAKYVTVVS 166
             L      DK ++      + ++DP       TN+Y+ NL  +  + +L  +  ++    S
Sbjct:   193 LNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTS 252

Query:   167 TRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGST 202
               I+RD    SKG GF   E+ D   + +   NG T
Sbjct:   253 CVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKT 288

 Score = 160 (61.4 bits), Expect = 7.0e-09, P = 7.0e-09
 Identities = 42/168 (25%), Positives = 74/168 (44%)

Query:    45 GSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGF 104
             G+     G  Q   T+LY+  L    TD  L    +Q G ++S +   D TT +  GYG+
Sbjct:    31 GAAAAAAGAAQQGTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGY 90

Query:   105 VDFESGGYALAAVKALQDKGIHAQMAR--QQEQDPT-------NLYIANLPLNFKECDLE 155
             V++ +   A  A+  L    ++ +  R     +DP+       N++I NL  +     L 
Sbjct:    91 VNYATPQDASRALNELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALH 150

Query:   156 SLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTL 203
                + +  ++S ++  D +  SKG GF + ++ +     I   NG  L
Sbjct:   151 ETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLL 198

 Score = 113 (44.8 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
 Identities = 24/74 (32%), Positives = 46/74 (62%)

Query:    50 PTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFES 109
             P+G E++  TN+Y++ L++  +D++L  +  ++G + ++  I+     K +G+GFV+FE+
Sbjct:   216 PSG-EKVKFTNVYVKNLSESLSDEELNKVFGEFG-VTTSCVIMRDGEGKSKGFGFVNFEN 273

Query:   110 GGYALAAVKALQDK 123
                A  AV AL  K
Sbjct:   274 SDDAARAVDALNGK 287

 Score = 98 (39.6 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
 Identities = 40/161 (24%), Positives = 71/161 (44%)

Query:   138 TNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQL 197
             +NLY+ NL  +  +  L    A + T+ S +++RD +  S+G GF    + ++  + I  
Sbjct:   327 SNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITE 386

Query:   198 FNGSTLPGSKEPLLVKFAD------SGLKKRGAGAGGPNIYRGPGAEVRLW--GRDSADS 249
              NG  +    +PL V  A       + L+ + +     N+    G  ++++  G      
Sbjct:   387 MNGKMIV--TKPLYVALAQRKEDRKARLQAQFSQMRPVNMPPAVGPRMQMYPPGGPPMGQ 444

Query:   250 QLAY-EHP--MTPIPATIQYQRFTAG--PGGTGHIPAGYTP 285
             QL Y + P  M P P     Q+   G  PGG+  +P  + P
Sbjct:   445 QLFYGQGPPAMIPQPGFGYQQQLVPGMRPGGSP-MPNFFMP 484


>UNIPROTKB|F1MWR2 [details] [associations]
            symbol:SF3B4 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
            EMBL:DAAA02007272 IPI:IPI00717302 RefSeq:NP_001192513.1
            UniGene:Bt.3914 ProteinModelPortal:F1MWR2
            Ensembl:ENSBTAT00000016577 GeneID:506123 KEGG:bta:506123
            NextBio:20867458 ArrayExpress:F1MWR2 Uniprot:F1MWR2
        Length = 424

 Score = 171 (65.3 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 69/258 (26%), Positives = 106/258 (41%)

Query:    52 GP--EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDF-- 107
             GP  E+     +Y+ GL +  ++  L  +  Q GP+++T    D+ T + +GYGFV+F  
Sbjct:     4 GPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLS 63

Query:   108 -ESGGYALAAVKALQDKG----IHAQMARQQEQDP-TNLYIANLPLNFKECDLESLLAKY 161
              E   YA+  +  ++  G    ++   A  +  D   N++I NL     E  L    + +
Sbjct:    64 EEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAF 123

Query:   162 VTVVST-RILRD-NNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGL 219
               ++ T +I+RD +   SKG  F    S D  D  I+  NG  L     P+ V +A    
Sbjct:   124 GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL--CNRPITVSYA---F 178

Query:   220 KKRGAGAGGPNIYRGPGAEVRLWGRDSADSQLAYEHPM-TPIPATIQYQRFTAGPGGTGH 278
             KK   G        G  AE RL    +  SQ    H +    P             G+G 
Sbjct:   179 KKDSKGER-----HGSAAE-RLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGL 232

Query:   279 IPAGYTPWVPTQYVMPAP 296
              P G  P  P  +  P P
Sbjct:   233 PPPGMPP--PGSFPPPVP 248


>UNIPROTKB|E2R5T2 [details] [associations]
            symbol:SF3B4 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
            CTD:10262 EMBL:AAEX03011046 EMBL:AAEX03011045 RefSeq:XP_540295.3
            ProteinModelPortal:E2R5T2 Ensembl:ENSCAFT00000018450 GeneID:483177
            KEGG:cfa:483177 NextBio:20857615 Uniprot:E2R5T2
        Length = 424

 Score = 171 (65.3 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 69/258 (26%), Positives = 106/258 (41%)

Query:    52 GP--EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDF-- 107
             GP  E+     +Y+ GL +  ++  L  +  Q GP+++T    D+ T + +GYGFV+F  
Sbjct:     4 GPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLS 63

Query:   108 -ESGGYALAAVKALQDKG----IHAQMARQQEQDP-TNLYIANLPLNFKECDLESLLAKY 161
              E   YA+  +  ++  G    ++   A  +  D   N++I NL     E  L    + +
Sbjct:    64 EEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAF 123

Query:   162 VTVVST-RILRD-NNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGL 219
               ++ T +I+RD +   SKG  F    S D  D  I+  NG  L     P+ V +A    
Sbjct:   124 GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL--CNRPITVSYA---F 178

Query:   220 KKRGAGAGGPNIYRGPGAEVRLWGRDSADSQLAYEHPM-TPIPATIQYQRFTAGPGGTGH 278
             KK   G        G  AE RL    +  SQ    H +    P             G+G 
Sbjct:   179 KKDSKGER-----HGSAAE-RLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGL 232

Query:   279 IPAGYTPWVPTQYVMPAP 296
              P G  P  P  +  P P
Sbjct:   233 PPPGMPP--PGSFPPPVP 248


>UNIPROTKB|Q15427 [details] [associations]
            symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005689 "U12-type
            spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA processing"
            evidence=TAS] [GO:0000375 "RNA splicing, via transesterification
            reactions" evidence=TAS] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
            evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
            "RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
            evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
            Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
            GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:CH471121 GO:GO:0000398 EMBL:AL591493 eggNOG:COG0724
            HOVERGEN:HBG002295 GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831
            EMBL:AL590487 OMA:VSETLLW EMBL:L35013 EMBL:BC004273 EMBL:BC013886
            EMBL:BC090883 IPI:IPI00017339 PIR:A54964 RefSeq:NP_005841.1
            UniGene:Hs.516160 PDB:1X5T PDB:1X5U PDBsum:1X5T PDBsum:1X5U
            ProteinModelPortal:Q15427 SMR:Q15427 IntAct:Q15427
            MINT:MINT-1032702 STRING:Q15427 PhosphoSite:Q15427 DMDM:2500587
            PaxDb:Q15427 PeptideAtlas:Q15427 PRIDE:Q15427 DNASU:10262
            Ensembl:ENST00000271628 Ensembl:ENST00000582851 GeneID:10262
            KEGG:hsa:10262 UCSC:uc001etk.2 CTD:10262 GeneCards:GC01M149895
            HGNC:HGNC:10771 HPA:HPA028578 MIM:154400 MIM:605593
            neXtProt:NX_Q15427 Orphanet:245 PharmGKB:PA35689 InParanoid:Q15427
            OrthoDB:EOG4M65JJ PhylomeDB:Q15427 EvolutionaryTrace:Q15427
            GenomeRNAi:10262 NextBio:38880 ArrayExpress:Q15427 Bgee:Q15427
            CleanEx:HS_SF3B4 Genevestigator:Q15427 GermOnline:ENSG00000143368
            Uniprot:Q15427
        Length = 424

 Score = 171 (65.3 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 69/258 (26%), Positives = 106/258 (41%)

Query:    52 GP--EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDF-- 107
             GP  E+     +Y+ GL +  ++  L  +  Q GP+++T    D+ T + +GYGFV+F  
Sbjct:     4 GPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLS 63

Query:   108 -ESGGYALAAVKALQDKG----IHAQMARQQEQDP-TNLYIANLPLNFKECDLESLLAKY 161
              E   YA+  +  ++  G    ++   A  +  D   N++I NL     E  L    + +
Sbjct:    64 EEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAF 123

Query:   162 VTVVST-RILRD-NNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGL 219
               ++ T +I+RD +   SKG  F    S D  D  I+  NG  L     P+ V +A    
Sbjct:   124 GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL--CNRPITVSYA---F 178

Query:   220 KKRGAGAGGPNIYRGPGAEVRLWGRDSADSQLAYEHPM-TPIPATIQYQRFTAGPGGTGH 278
             KK   G        G  AE RL    +  SQ    H +    P             G+G 
Sbjct:   179 KKDSKGER-----HGSAAE-RLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGL 232

Query:   279 IPAGYTPWVPTQYVMPAP 296
              P G  P  P  +  P P
Sbjct:   233 PPPGMPP--PGSFPPPVP 248


>UNIPROTKB|F1SDG0 [details] [associations]
            symbol:SF3B4 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
            CTD:10262 EMBL:CU468464 RefSeq:XP_001926524.1 UniGene:Ssc.3222
            ProteinModelPortal:F1SDG0 Ensembl:ENSSSCT00000007303
            GeneID:100157814 KEGG:ssc:100157814 Uniprot:F1SDG0
        Length = 424

 Score = 171 (65.3 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 69/258 (26%), Positives = 106/258 (41%)

Query:    52 GP--EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDF-- 107
             GP  E+     +Y+ GL +  ++  L  +  Q GP+++T    D+ T + +GYGFV+F  
Sbjct:     4 GPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLS 63

Query:   108 -ESGGYALAAVKALQDKG----IHAQMARQQEQDP-TNLYIANLPLNFKECDLESLLAKY 161
              E   YA+  +  ++  G    ++   A  +  D   N++I NL     E  L    + +
Sbjct:    64 EEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAF 123

Query:   162 VTVVST-RILRD-NNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGL 219
               ++ T +I+RD +   SKG  F    S D  D  I+  NG  L     P+ V +A    
Sbjct:   124 GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL--CNRPITVSYA---F 178

Query:   220 KKRGAGAGGPNIYRGPGAEVRLWGRDSADSQLAYEHPM-TPIPATIQYQRFTAGPGGTGH 278
             KK   G        G  AE RL    +  SQ    H +    P             G+G 
Sbjct:   179 KKDSKGER-----HGSAAE-RLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGL 232

Query:   279 IPAGYTPWVPTQYVMPAP 296
              P G  P  P  +  P P
Sbjct:   233 PPPGMPP--PGSFPPPVP 248


>MGI|MGI:109580 [details] [associations]
            symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
            complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
            evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            MGI:MGI:109580 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
            GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
            GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 CTD:10262
            OrthoDB:EOG4M65JJ EMBL:AK047751 EMBL:AK135543 EMBL:BC024418
            EMBL:BC026567 EMBL:BC085273 IPI:IPI00154082 RefSeq:NP_694693.1
            UniGene:Mm.219671 ProteinModelPortal:Q8QZY9 SMR:Q8QZY9
            IntAct:Q8QZY9 STRING:Q8QZY9 PhosphoSite:Q8QZY9 PaxDb:Q8QZY9
            PRIDE:Q8QZY9 Ensembl:ENSMUST00000076372 GeneID:107701
            KEGG:mmu:107701 UCSC:uc008qme.1 InParanoid:Q8QZY9 OMA:FASISHH
            NextBio:359278 Bgee:Q8QZY9 Genevestigator:Q8QZY9 Uniprot:Q8QZY9
        Length = 424

 Score = 171 (65.3 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 69/258 (26%), Positives = 106/258 (41%)

Query:    52 GP--EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDF-- 107
             GP  E+     +Y+ GL +  ++  L  +  Q GP+++T    D+ T + +GYGFV+F  
Sbjct:     4 GPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLS 63

Query:   108 -ESGGYALAAVKALQDKG----IHAQMARQQEQDP-TNLYIANLPLNFKECDLESLLAKY 161
              E   YA+  +  ++  G    ++   A  +  D   N++I NL     E  L    + +
Sbjct:    64 EEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAF 123

Query:   162 VTVVST-RILRD-NNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGL 219
               ++ T +I+RD +   SKG  F    S D  D  I+  NG  L     P+ V +A    
Sbjct:   124 GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL--CNRPITVSYA---F 178

Query:   220 KKRGAGAGGPNIYRGPGAEVRLWGRDSADSQLAYEHPM-TPIPATIQYQRFTAGPGGTGH 278
             KK   G        G  AE RL    +  SQ    H +    P             G+G 
Sbjct:   179 KKDSKGER-----HGSAAE-RLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGL 232

Query:   279 IPAGYTPWVPTQYVMPAP 296
              P G  P  P  +  P P
Sbjct:   233 PPPGMPP--PGSFPPPVP 248


>RGD|1309667 [details] [associations]
            symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681 "spliceosomal
            complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
            evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1309667 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
            GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
            GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 OMA:VSETLLW CTD:10262
            OrthoDB:EOG4M65JJ EMBL:BC078997 IPI:IPI00371860
            RefSeq:NP_001011951.1 UniGene:Rn.116275 ProteinModelPortal:Q6AYL5
            SMR:Q6AYL5 STRING:Q6AYL5 PRIDE:Q6AYL5 Ensembl:ENSRNOT00000028758
            GeneID:295270 KEGG:rno:295270 UCSC:RGD:1309667 InParanoid:Q6AYL5
            NextBio:639268 Genevestigator:Q6AYL5 Uniprot:Q6AYL5
        Length = 424

 Score = 171 (65.3 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 69/258 (26%), Positives = 106/258 (41%)

Query:    52 GP--EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDF-- 107
             GP  E+     +Y+ GL +  ++  L  +  Q GP+++T    D+ T + +GYGFV+F  
Sbjct:     4 GPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLS 63

Query:   108 -ESGGYALAAVKALQDKG----IHAQMARQQEQDP-TNLYIANLPLNFKECDLESLLAKY 161
              E   YA+  +  ++  G    ++   A  +  D   N++I NL     E  L    + +
Sbjct:    64 EEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAF 123

Query:   162 VTVVST-RILRD-NNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGL 219
               ++ T +I+RD +   SKG  F    S D  D  I+  NG  L     P+ V +A    
Sbjct:   124 GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL--CNRPITVSYA---F 178

Query:   220 KKRGAGAGGPNIYRGPGAEVRLWGRDSADSQLAYEHPM-TPIPATIQYQRFTAGPGGTGH 278
             KK   G        G  AE RL    +  SQ    H +    P             G+G 
Sbjct:   179 KKDSKGER-----HGSAAE-RLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGL 232

Query:   279 IPAGYTPWVPTQYVMPAP 296
              P G  P  P  +  P P
Sbjct:   233 PPPGMPP--PGSFPPPVP 248


>DICTYBASE|DDB_G0290307 [details] [associations]
            symbol:DDB_G0290307 "ELAVL1-like protein"
            species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
            [GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            dictyBase:DDB_G0290307 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AAFI02000162 eggNOG:NOG256997 RefSeq:XP_635793.1
            ProteinModelPortal:Q54G90 EnsemblProtists:DDB0233651 GeneID:8627598
            KEGG:ddi:DDB_G0290307 InParanoid:Q54G90 OMA:SATNQCK Uniprot:Q54G90
        Length = 459

 Score = 122 (48.0 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
 Identities = 27/91 (29%), Positives = 48/91 (52%)

Query:   133 QEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRD-NNNTSKGVGFARLESKDKC 191
             +++   N++I  LP+ F +  L  L + Y  VV +++L D   N S+G G  R       
Sbjct:   214 EQKISNNVFIRGLPIEFDKNQLSELFSAYGEVVESKLLIDITTNASRGQGLVRYIDTQSA 273

Query:   192 DQMIQLFNGSTLPGSKEPLLVKFADSGLKKR 222
                ++  NG  L   ++PL+V+FAD+  +K+
Sbjct:   274 INAVKSLNGFILQDPEKPLIVRFADNEDEKK 304

 Score = 121 (47.7 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
 Identities = 30/84 (35%), Positives = 43/84 (51%)

Query:    39 NNVQHNGSPGTPTG--PEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTT 96
             NN  +N S    T    EQ    N++IRGL  +     L  + S YG ++ +K ++D TT
Sbjct:   197 NNNNNNNSNNNNTNNIDEQKISNNVFIRGLPIEFDKNQLSELFSAYGEVVESKLLIDITT 256

Query:    97 NKCRGYGFVDFESGGYALAAVKAL 120
             N  RG G V +     A+ AVK+L
Sbjct:   257 NASRGQGLVRYIDTQSAINAVKSL 280

 Score = 118 (46.6 bits), Expect = 0.00025, P = 0.00025
 Identities = 29/83 (34%), Positives = 41/83 (49%)

Query:    39 NNVQHNGSPGTPTGPEQ-LSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTN 97
             N++  + S   P G       TNLY+  L  D  D  L  + S  G I S K + D+TT 
Sbjct:   361 NSMIGSSSQPPPGGKNPGTDPTNLYVYNLPSDADDSLLYRLFSPCGAIASVKIVRDQTTQ 420

Query:    98 KCRGYGFVDFESGGYALAAVKAL 120
              CRGYGFV   S   + +A+ ++
Sbjct:   421 VCRGYGFVRMVSLADSYSAINSI 443

 Score = 95 (38.5 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
 Identities = 24/71 (33%), Positives = 34/71 (47%)

Query:   136 DPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNN-TSKGVGFARLESKDKCDQM 194
             DPTNLY+ NLP +  +  L  L +    + S +I+RD      +G GF R+ S       
Sbjct:   380 DPTNLYVYNLPSDADDSLLYRLFSPCGAIASVKIVRDQTTQVCRGYGFVRMVSLADSYSA 439

Query:   195 IQLFNGSTLPG 205
             I   NG  + G
Sbjct:   440 INSINGVQVGG 450

 Score = 94 (38.1 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
 Identities = 27/105 (25%), Positives = 44/105 (41%)

Query:    37 TTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTT 96
             TT          T T     +  NL+I  L    T   L ++ S +G I S + ++D  T
Sbjct:    77 TTTTTTTMTQTSTSTSSNSANSGNLFISFLPATYTSDTLRSIFSAFGEIDSCRVMVDLNT 136

Query:    97 NKCRGYGFVDFESGGYALAAVKALQDKGIHAQ--MARQQEQDPTN 139
                RG+GFV F+    A  A+ ++    +  +  + R    DP +
Sbjct:   137 GLSRGFGFVKFKDVASAQYAINSMNGAKVENKTLLVRFANSDPNS 181


>SGD|S000000967 [details] [associations]
            symbol:PAB1 "Poly(A) binding protein" species:4932
            "Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
            evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
            [GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
            stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IEA;IDA] [GO:0006446 "regulation of translational
            initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
            "transport" evidence=IEA] [GO:0051028 "mRNA transport"
            evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
            poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
            GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
            GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
            GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
            EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
            PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
            DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
            PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
            KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
            NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
            Uniprot:P04147
        Length = 577

 Score = 172 (65.6 bits), Expect = 2.1e-10, P = 2.1e-10
 Identities = 49/163 (30%), Positives = 80/163 (49%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I+ L  D  +K L +  S +G I+S+K   D+   K +G+GFV FE  G A  A+ A
Sbjct:   127 NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDEN-GKSKGFGFVHFEEEGAAKEAIDA 185

Query:   120 LQDKGIHAQ---MA---RQQEQDP---------TNLYIANLPLNFKECDLESLLAKYVTV 164
             L    ++ Q   +A    ++E+D          TNLY+ N+     +   + L AK+  +
Sbjct:   186 LNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPI 245

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSK 207
             VS  + +D +   KG GF   E  +   + ++  N S L G K
Sbjct:   246 VSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEK 288

 Score = 148 (57.2 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 42/175 (24%), Positives = 75/175 (42%)

Query:    42 QHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRG 101
             Q   + G+ +   + S  +LY+  L    ++  L ++ S  G + S +   D  T    G
Sbjct:    21 QKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLG 80

Query:   102 YGFVDFESGGYALAAVKALQDKGIHAQMAR--QQEQDPT-------NLYIANLPLNFKEC 152
             Y +V+F        A++ L    I  ++ R    ++DP+       N++I NL  +    
Sbjct:    81 YAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNK 140

Query:   153 DLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSK 207
              L    + +  ++S++I  D N  SKG GF   E +    + I   NG  L G +
Sbjct:   141 ALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQE 195

 Score = 134 (52.2 bits), Expect = 5.4e-06, P = 5.4e-06
 Identities = 33/104 (31%), Positives = 58/104 (55%)

Query:    59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTN-KCRGYGFVDFESGGYALAAV 117
             TNLY++ +  +TTD+    + +++GPI+S  A L+K  + K +G+GFV++E    A+ AV
Sbjct:   219 TNLYVKNINSETTDEQFQELFAKFGPIVS--ASLEKDADGKLKGFGFVNYEKHEDAVKAV 276

Query:   118 KALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDLESLLAKY 161
             +AL D  ++ +          N  +  L   ++   LE + AKY
Sbjct:   277 EALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKM-AKY 319


>UNIPROTKB|I3L906 [details] [associations]
            symbol:I3L906 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00630000089747
            EMBL:CU928728 Ensembl:ENSSSCT00000025456 Uniprot:I3L906
        Length = 68

 Score = 150 (57.9 bits), Expect = 2.1e-10, P = 2.1e-10
 Identities = 30/53 (56%), Positives = 40/53 (75%)

Query:   151 ECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTL 203
             E +LE++L  +  V+STRILRD N  S+GVGFAR+ES +KC+ +IQ FNG  L
Sbjct:     3 EQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYL 55


>UNIPROTKB|E1BNB4 [details] [associations]
            symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
            EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
            Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
        Length = 618

 Score = 172 (65.6 bits), Expect = 2.3e-10, P = 2.3e-10
 Identities = 44/161 (27%), Positives = 84/161 (52%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I+ L     +K L +  S +G I+S K + D+  +  RG+GFV FE+   A  A+  
Sbjct:   100 NIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDE--HGSRGFGFVHFETHEAAQNAIST 157

Query:   120 -----LQDKGI---HAQMARQQE-------QDPTNLYIANLPLNFKECDLESLLAKYVTV 164
                  L D+ +   H +  R++E        + TN+Y+ NL ++  E  L+ L +++  +
Sbjct:   158 MNGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKM 217

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPG 205
             +S +++RD++  S+G GF   E  ++  + +   NG  + G
Sbjct:   218 LSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSG 258

 Score = 135 (52.6 bits), Expect = 4.6e-06, P = 4.6e-06
 Identities = 40/157 (25%), Positives = 69/157 (43%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             +LY+  L  D T+  L    S  GPI+S +   D  T +  GY +++F+    A  A+  
Sbjct:    12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71

Query:   120 LQDKGIHAQMAR--QQEQDPT-------NLYIANLPLNFKECDLESLLAKYVTVVSTRIL 170
             +  + I  Q  R    ++DP        N++I NL  +     L    + +  ++S +++
Sbjct:    72 MNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVV 131

Query:   171 RDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSK 207
              D +  S+G GF   E+ +     I   NG  L   K
Sbjct:   132 CDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRK 167

 Score = 107 (42.7 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
 Identities = 23/78 (29%), Positives = 44/78 (56%)

Query:    52 GPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGG 111
             G   +  TN+Y++ L  D  ++ L ++ SQ+G ++S K + D + +  RG+GFV+FE   
Sbjct:   184 GARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHS-RGFGFVNFEKHE 242

Query:   112 YALAAVKALQDKGIHAQM 129
              A  AV  +  + +  ++
Sbjct:   243 EAQKAVVNMNGREVSGRL 260

 Score = 84 (34.6 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
 Identities = 36/138 (26%), Positives = 58/138 (42%)

Query:   139 NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLF 198
             NLY+ NL  +  +  L    + Y  + S +++ +  + SKG GF    S ++  + +   
Sbjct:   295 NLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGH-SKGFGFVCFSSPEEATKAVTEM 353

Query:   199 NGSTLPGSKEPLLVKFADSGLKKRGAGAGGPNIYRGPGAEVRLWGRD---SADSQLAYEH 255
             NG  + G+K PL V  A    +K    A   N Y    + +R  G     S     +Y  
Sbjct:   354 NGRIV-GTK-PLYVALAQ---RKEERKAILTNQYMQRLSTMRALGGPILGSFQQPASYFL 408

Query:   256 PMTPIPATIQYQRFTAGP 273
             P  P P   Q   + +GP
Sbjct:   409 PAVPQPPA-QAPYYGSGP 425


>TAIR|locus:2139340 [details] [associations]
            symbol:RBP-DR1 "RNA-binding protein-defense related 1"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISS]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0009626 "plant-type
            hypersensitive response" evidence=IMP] [GO:0080151 "positive
            regulation of salicylic acid mediated signaling pathway"
            evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=RCA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 EMBL:CP002687 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 GO:GO:0009626
            KO:K13207 eggNOG:NOG251494 OMA:SAMESIN HSSP:Q60900 GO:GO:0080151
            EMBL:AY084669 EMBL:AK316961 IPI:IPI00541126 RefSeq:NP_567249.1
            UniGene:At.28541 ProteinModelPortal:Q8LFS6 SMR:Q8LFS6 STRING:Q8LFS6
            PaxDb:Q8LFS6 PRIDE:Q8LFS6 EnsemblPlants:AT4G03110.1 GeneID:828090
            KEGG:ath:AT4G03110 TAIR:At4g03110 InParanoid:Q8LFS6
            PhylomeDB:Q8LFS6 ProtClustDB:CLSN2689309 Genevestigator:Q8LFS6
            Uniprot:Q8LFS6
        Length = 441

 Score = 169 (64.5 bits), Expect = 2.9e-10, P = 2.9e-10
 Identities = 58/236 (24%), Positives = 104/236 (44%)

Query:    54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYA 113
             E+     L++  + +  ++  L+ +  ++  +     I DK T   RG  F+   S   A
Sbjct:    13 EEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEA 72

Query:   114 LAAVKALQDK----GIHAQMA-----RQQEQDPTNLYIANLPLNFKECDLESLLAKYVTV 164
                V A  +K    G ++ +       + E+    L++  LP N  E +++SL +KY T+
Sbjct:    73 DKLVNACHNKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLFSKYGTI 132

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGS-TLPGSKEPLLVKFADSGLKKRG 223
                +ILR    TSKG  F + E+K++    ++  NG   + GS  PL+VK+AD+  ++  
Sbjct:   133 KDLQILRGAQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPLVVKWADTERERHT 192

Query:   224 AGAGGPNIYRGPGAEVRLWGRDSADSQLAYEHPMTPIPATIQYQRFTAGPGGTGHI 279
                    + +      RL   D  +  L    PM  +P    Y  +   PG  G++
Sbjct:   193 R-----RLQKAQSHIARLGNGDPTNPSLFGALPMGYVPPYNGYG-YHQPPGTYGYM 242


>UNIPROTKB|F1SDR6 [details] [associations]
            symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
            EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
        Length = 608

 Score = 171 (65.3 bits), Expect = 3.0e-10, P = 3.0e-10
 Identities = 44/161 (27%), Positives = 83/161 (51%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I+ L     +K L +  S +G I+S K + D   +  RG+GFV FE+   A  A++ 
Sbjct:   100 NVFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDD--HGSRGFGFVHFETHEAAQNAIRT 157

Query:   120 -----LQDKGI---HAQMARQQEQDP-------TNLYIANLPLNFKECDLESLLAKYVTV 164
                  L D+ +   H +  R++E +        TN+Y+ NL ++  E  L+ L +++  +
Sbjct:   158 MNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLHVDVDERCLQDLFSQFGKI 217

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPG 205
             +S +++RD++  S+G GF   E  +   + +   NG  + G
Sbjct:   218 LSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSG 258

 Score = 136 (52.9 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 40/157 (25%), Positives = 71/157 (45%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             +LY+  L  D T+  L    S  GPI+S +   D  T +  GY +++F+    A  A+  
Sbjct:    12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71

Query:   120 LQDKGIHAQMAR--QQEQDPT-------NLYIANLPLNFKECDLESLLAKYVTVVSTRIL 170
             +  + I  Q  R    ++DP        N++I NL  +     L    + +  ++S +++
Sbjct:    72 MNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFGNILSCKVV 131

Query:   171 RDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSK 207
              D++  S+G GF   E+ +     I+  NG  L   K
Sbjct:   132 CDDHG-SRGFGFVHFETHEAAQNAIRTMNGMLLNDRK 167

 Score = 115 (45.5 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
 Identities = 26/78 (33%), Positives = 44/78 (56%)

Query:    52 GPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGG 111
             G   L  TN+Y++ L  D  ++ L ++ SQ+G I+S K + D + +  RG+GFV+FE   
Sbjct:   184 GARALEFTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHS-RGFGFVNFEKHE 242

Query:   112 YALAAVKALQDKGIHAQM 129
              A  AV  +  K +  ++
Sbjct:   243 DAQKAVTDMNGKEVSGRL 260

 Score = 88 (36.0 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
 Identities = 37/138 (26%), Positives = 58/138 (42%)

Query:   139 NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLF 198
             NLY+ NL  +  +  L    A Y  + S +++ +  + SKG GF    S ++  + +   
Sbjct:   295 NLYVKNLDDSIDDEKLRKEFAPYGMITSAKVMTEGGH-SKGFGFVCFSSPEEATKAVTEM 353

Query:   199 NGSTLPGSKEPLLVKFADSGLKKRGAGAGGPNIYRGPGAEVRLWGRD---SADSQLAYEH 255
             NG  + G+K PL V  A    +K    A   N Y    + +R  G     S     +Y  
Sbjct:   354 NGRIV-GTK-PLYVALAQ---RKEERKAILTNQYIQRLSTMRALGSPLLGSLQQPTSYFL 408

Query:   256 PMTPIPATIQYQRFTAGP 273
             P  P P   Q   + +GP
Sbjct:   409 PAVPQPPA-QSPYYASGP 425


>TAIR|locus:2009036 [details] [associations]
            symbol:PAB1 "poly(A) binding protein 1" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
            initiation factor activity" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            KO:K13126 IPI:IPI00540782 RefSeq:NP_174676.2 UniGene:At.51928
            ProteinModelPortal:F4HT49 SMR:F4HT49 PRIDE:F4HT49
            EnsemblPlants:AT1G34140.1 GeneID:840313 KEGG:ath:AT1G34140
            OMA:VLSIRIC ArrayExpress:F4HT49 Uniprot:F4HT49
        Length = 407

 Score = 142 (55.0 bits), Expect = 3.7e-07, P = 3.7e-07
 Identities = 39/151 (25%), Positives = 70/151 (46%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVK- 118
             N++++ L +   +K L +M S +G ++S K   D  +   +GYGFV F S      A   
Sbjct:    32 NVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARD-ASGVSKGYGFVQFYSDLSVYTACNF 90

Query:   119 ----ALQDKGIHAQ--MARQQEQDP---TNLYIANLPLNFKECDLESLLAKYVTVVSTRI 169
                  ++++ IH    ++R Q       TN+Y+ NL     + DL+ L  ++  + S  +
Sbjct:    91 HNGTLIRNQHIHVCPFVSRGQWDKSRVFTNVYVKNLVETATDADLKRLFGEFGEITSAVV 150

Query:   170 LRDNNNTSKGVGFARLESKDKCDQMIQLFNG 200
             ++D    S+  GF   E  +     I+  NG
Sbjct:   151 MKDGEGKSRRFGFVNFEKAEAAVTAIEKMNG 181

 Score = 110 (43.8 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
 Identities = 24/77 (31%), Positives = 42/77 (54%)

Query:   139 NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLF 198
             NLY+ NL  +     LE L +++ T+ S +++  +N  SKGVGF    + ++  + +   
Sbjct:   224 NLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKM 283

Query:   199 NGSTLPGSKEPLLVKFA 215
             NG  + G+K P+ V  A
Sbjct:   284 NGKMV-GNK-PIYVSLA 298

 Score = 104 (41.7 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
 Identities = 24/80 (30%), Positives = 43/80 (53%)

Query:    59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVK 118
             TN+Y++ L +  TD DL  +  ++G I S   + D    K R +GFV+FE    A+ A++
Sbjct:   119 TNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGE-GKSRRFGFVNFEKAEAAVTAIE 177

Query:   119 ALQ-----DKGIHAQMARQQ 133
              +      +K +H   A+++
Sbjct:   178 KMNGVVVDEKELHVGRAQRK 197


>POMBASE|SPAC57A7.04c [details] [associations]
            symbol:pabp "mRNA export shuttling protein"
            species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
            translational initiation" evidence=NAS] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
            "cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
            evidence=IMP] [GO:0006446 "regulation of translational initiation"
            evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
            GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
            GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
            RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
            IntAct:P31209 STRING:P31209 PRIDE:P31209
            EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
            OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
        Length = 653

 Score = 158 (60.7 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 44/163 (26%), Positives = 77/163 (47%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVK- 118
             N++I+ L     +K L +  S +G I+S K  +D+  N  +GYGFV F+S   A AA++ 
Sbjct:   169 NVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGN-AKGYGFVHFDSVESANAAIEH 227

Query:   119 ----ALQDKGIHA--QMARQQEQDP--------TNLYIANLPLNFKECDLESLLAKYVTV 164
                  L DK ++    ++R++ Q          TN+YI NL     E +   L  ++  +
Sbjct:   228 VNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEI 287

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSK 207
              S  +++D N+  +G GF    + +   + +   N     G K
Sbjct:   288 TSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKK 330

 Score = 144 (55.7 bits), Expect = 4.7e-07, P = 4.7e-07
 Identities = 46/181 (25%), Positives = 78/181 (43%)

Query:    37 TTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTT 96
             +T+   +  S  TP+G    S  +LY+  L    T+  L  + +  GP+ S +   D  T
Sbjct:    59 STSTPTNASSVATPSGTAPTS-ASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVT 117

Query:    97 NKCRGYGFVDF---ESGGYALAAVKALQDKGIHAQMARQQEQDPT-------NLYIANLP 146
              +  GY +V+F   E G  AL  +     KG   ++   Q +DP+       N++I NL 
Sbjct:   118 RRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQ-RDPSLRKMGTGNVFIKNLD 176

Query:   147 LNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGS 206
                    L    + +  ++S ++  D    +KG GF   +S +  +  I+  NG  L   
Sbjct:   177 PAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDK 236

Query:   207 K 207
             K
Sbjct:   237 K 237

 Score = 112 (44.5 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
 Identities = 46/178 (25%), Positives = 74/178 (41%)

Query:   128 QMARQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLES 187
             ++ +  +    NL+I NL     +  L++  + + T+ S +I+ D    SKG GF    +
Sbjct:   354 KLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTT 413

Query:   188 KDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRG---AGAGGPNIYRGPGAEVRLWG- 243
              ++ ++ +   N   L G  +PL V  A     +R    A     N +R         G 
Sbjct:   414 PEEANKAVTEMNQRMLAG--KPLYVALAQRKEVRRSQLEAQIQARNQFRLQQQVAAAAGI 471

Query:   244 ---RDSADSQLAYEHPMTPIPATIQYQRFTAGPGGTGHIPAGYTPWVPTQYVM--PAP 296
                +  A   L Y     PIPA +  +     PG  G +P  Y P +PTQ+    PAP
Sbjct:   472 PAVQYGATGPLIYGPGGYPIPAAVNGRGMPMVPGHNGPMPM-Y-PGMPTQFPAGGPAP 527

 Score = 107 (42.7 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
 Identities = 23/65 (35%), Positives = 39/65 (60%)

Query:    59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVK 118
             TN+YI+ L  + T+++  ++  Q+G I S   + D+  +K RG+GFV++ +   A  AV 
Sbjct:   261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQN-DKPRGFGFVNYANHECAQKAVD 319

Query:   119 ALQDK 123
              L DK
Sbjct:   320 ELNDK 324


>UNIPROTKB|E2RND1 [details] [associations]
            symbol:PABPC1L "Uncharacterized protein" species:9615
            "Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
            EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
        Length = 644

 Score = 171 (65.3 bits), Expect = 3.3e-10, P = 3.3e-10
 Identities = 43/161 (26%), Positives = 83/161 (51%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I+ L     +K L +  S +G I+S K + D   +  RG+GFV FE+   A  A+  
Sbjct:   100 NIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDD--HGSRGFGFVHFETHEAAQQAITT 157

Query:   120 -----LQDKGI---HAQMARQQE-------QDPTNLYIANLPLNFKECDLESLLAKYVTV 164
                  L D+ +   H +  R++E        + TN+Y+ NL ++  E  L+ L +++  +
Sbjct:   158 MNGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKM 217

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPG 205
             +S +++RD++  S+G GF   +  ++  + +   NG  + G
Sbjct:   218 LSVKVMRDDSGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSG 258

 Score = 140 (54.3 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 41/157 (26%), Positives = 71/157 (45%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             +LY+  L  D T+  L    S  GPI+S +   D  T +  GY +++F+    A  A+  
Sbjct:    12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71

Query:   120 LQDKGIHAQMAR--QQEQDPT-------NLYIANLPLNFKECDLESLLAKYVTVVSTRIL 170
             +  + I  Q  R    ++DP        N++I NL  +     L    + +  ++S +++
Sbjct:    72 MNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVV 131

Query:   171 RDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSK 207
              D++  S+G GF   E+ +   Q I   NG  L   K
Sbjct:   132 CDDHG-SRGFGFVHFETHEAAQQAITTMNGMLLNDRK 167

 Score = 105 (42.0 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
 Identities = 22/78 (28%), Positives = 44/78 (56%)

Query:    52 GPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGG 111
             G   +  TN+Y++ L  D  ++ L ++ S++G ++S K + D + +  RG+GFV+F+   
Sbjct:   184 GARAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHS-RGFGFVNFQKHE 242

Query:   112 YALAAVKALQDKGIHAQM 129
              A  AV  +  K +  ++
Sbjct:   243 EAQKAVMDMNGKEVSGRL 260

 Score = 85 (35.0 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
 Identities = 23/77 (29%), Positives = 38/77 (49%)

Query:   139 NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLF 198
             NLY+ NL  +  +  L    + Y  + S +++ +  + SKG GF    S ++  + +   
Sbjct:   295 NLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGH-SKGFGFVCFSSPEEATKAVTEM 353

Query:   199 NGSTLPGSKEPLLVKFA 215
             NG  L G+K PL V  A
Sbjct:   354 NGRIL-GTK-PLYVALA 368


>DICTYBASE|DDB_G0293558 [details] [associations]
            symbol:pabpc1A "polyadenylate binding protein (PABP)"
            species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
            vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
            binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
            GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
            KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
            ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
            EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
            ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
        Length = 565

 Score = 161 (61.7 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
 Identities = 43/174 (24%), Positives = 84/174 (48%)

Query:    59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVK 118
             ++LY+  L  + +++ L  + +Q G + + +   D  T +   Y +V++ +G  A  A+ 
Sbjct:    10 SSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALD 69

Query:   119 ALQDKGIHAQMAR--QQEQDPT-------NLYIANLPLNFKECDLESLLAKYVTVVSTRI 169
              L +  I  +  R    ++DP+       N++I NL        L    + +  ++S ++
Sbjct:    70 TLNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKV 129

Query:   170 LRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRG 223
             + D+ N+SKG GF   E+++  D+ I   NG  + G K   +  F  S  K+RG
Sbjct:   130 VTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKV-FVGPFKSS--KERG 180

 Score = 153 (58.9 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
 Identities = 44/158 (27%), Positives = 74/158 (46%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFE---SGGYALAA 116
             N++I+ L +    K L +  S +G I+S K + D   N  +G+GFV +E   S   A+A 
Sbjct:    99 NVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDG-NSSKGFGFVHYETQESADKAIAK 157

Query:   117 VKALQDKG----IHAQMARQQEQDPT-----NLYIANLPLNFKECDLESLLAKYVTVVST 167
             V  +   G    +    + ++   PT     N++  NL  +     L+ LL +Y  + + 
Sbjct:   158 VNGMMINGQKVFVGPFKSSKERGQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNI 217

Query:   168 RILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPG 205
              I+ D+   SKG GFA  ES +    +++  NG    G
Sbjct:   218 TIMADDKGKSKGFGFANFESAEAAKNVVENENGKIFHG 255

 Score = 95 (38.5 bits), Expect = 3.3e-08, Sum P(3) = 3.3e-08
 Identities = 22/76 (28%), Positives = 37/76 (48%)

Query:    53 PEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGY 112
             P ++  TN++ + L++D     L  +  QYG I +   + D    K +G+GF +FES   
Sbjct:   182 PTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDK-GKSKGFGFANFESAEA 240

Query:   113 ALAAVKALQDKGIHAQ 128
             A   V+    K  H +
Sbjct:   241 AKNVVENENGKIFHGK 256

 Score = 94 (38.1 bits), Expect = 3.3e-08, Sum P(3) = 3.3e-08
 Identities = 24/78 (30%), Positives = 41/78 (52%)

Query:   139 NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNN-NTSKGVGFARLESKDKCDQMIQL 197
             NLYI N+  +     L  + +++ T+ S  +++D+   TSKG GF    + D+  + +  
Sbjct:   285 NLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTE 344

Query:   198 FNGSTLPGSKEPLLVKFA 215
              NG  + G+K PL V  A
Sbjct:   345 MNGRMI-GTK-PLYVALA 360

 Score = 48 (22.0 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
 Identities = 16/53 (30%), Positives = 20/53 (37%)

Query:   244 RDSADSQLAYEHPMTPIPATIQYQRFTAGPGGTGHIPAGYTPWVPTQYVMPAP 296
             +D   +QL  +H         Q    T G G     PA   P V  Q +MP P
Sbjct:   363 KDIRRAQLEMQHQQKFKTGIRQQMPPTYGSGPVFFTPAPVNPQVVYQQMMPRP 415


>TAIR|locus:2119495 [details] [associations]
            symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
            "mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
            evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
            evidence=IDA] [GO:0003697 "single-stranded DNA binding"
            evidence=IDA] [GO:0009414 "response to water deprivation"
            evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
            "RNA binding transcription antitermination factor activity"
            evidence=IDA] [GO:0006970 "response to osmotic stress"
            evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
            [GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
            "seed germination" evidence=IMP] [GO:0031564 "transcription
            antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
            evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
            [GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
            GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
            eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
            EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
            EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
            RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
            ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
            PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
            GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
            InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
            Genevestigator:Q9SVM8 Uniprot:Q9SVM8
        Length = 158

 Score = 146 (56.5 bits), Expect = 6.1e-10, P = 6.1e-10
 Identities = 32/94 (34%), Positives = 52/94 (55%)

Query:    40 NVQHNGS-PGTPT-GPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTN 97
             N+  NG+ P T   G  +L  T L+I GL+  T D  L +  + +G ++  K I+D+ T 
Sbjct:    14 NISSNGNVPVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETG 73

Query:    98 KCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131
             + RG+GFV+F   G A AA+  +  K ++ +  R
Sbjct:    74 RSRGFGFVNFNDEGAATAAISEMDGKELNGRHIR 107


>UNIPROTKB|J9P972 [details] [associations]
            symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
            Ensembl:ENSCAFT00000049246 Uniprot:J9P972
        Length = 258

 Score = 160 (61.4 bits), Expect = 6.3e-10, P = 6.3e-10
 Identities = 42/150 (28%), Positives = 70/150 (46%)

Query:    55 QLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESG---G 111
             Q +   L++ GL   TT + L +  SQYG ++    + DKTTN+ RG+GFV F+     G
Sbjct:    51 QAALRKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVG 110

Query:   112 YALAA-VKALQDKGIHA-QMARQQEQDPTN-LYIANLPLNFKECDLESLLAKYVTVVSTR 168
               LA+    L  + I   Q   + +   +N +++  +P N  E +L     K+  V    
Sbjct:   111 TVLASRPHTLDGRNIDPKQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVV 170

Query:   169 ILRD-NNNTSKGVGFARLESKDKCDQMIQL 197
             ++ D      +G GF   E +   DQ + +
Sbjct:   171 MIYDAEKQRPRGFGFITFEDEQSVDQAVNM 200


>SGD|S000005483 [details] [associations]
            symbol:HRP1 "Subunit of cleavage factor I" species:4932
            "Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
            evidence=IEA;IDA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IMP;IDA]
            [GO:0005849 "mRNA cleavage factor complex" evidence=IPI]
            [GO:0006379 "mRNA cleavage" evidence=IDA] [GO:0003729 "mRNA
            binding" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
            catabolic process, nonsense-mediated decay" evidence=IEA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000005483
            EMBL:BK006948 GO:GO:0000184 GO:GO:0000166 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0010494 eggNOG:COG0724
            GO:GO:0006379 GO:GO:0005849 KO:K14411 GeneTree:ENSGT00700000104255
            EMBL:U35737 EMBL:U38535 EMBL:X95258 EMBL:Z74865 PIR:S66820
            RefSeq:NP_014518.1 PDB:2CJK PDB:2KM8 PDBsum:2CJK PDBsum:2KM8
            ProteinModelPortal:Q99383 SMR:Q99383 DIP:DIP-1371N IntAct:Q99383
            MINT:MINT-395353 STRING:Q99383 PaxDb:Q99383 PeptideAtlas:Q99383
            EnsemblFungi:YOL123W GeneID:853997 KEGG:sce:YOL123W CYGD:YOL123w
            HOGENOM:HOG000248803 OMA:AREEQDK OrthoDB:EOG4TF3VC
            EvolutionaryTrace:Q99383 NextBio:975491 Genevestigator:Q99383
            GermOnline:YOL123W Uniprot:Q99383
        Length = 534

 Score = 167 (63.8 bits), Expect = 7.2e-10, P = 7.2e-10
 Identities = 52/211 (24%), Positives = 99/211 (46%)

Query:    56 LSKTN--LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYA 113
             LSK +  ++I GL  DTT+ +L     +YG +   K + D  T + RG+GF+ FE     
Sbjct:   154 LSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSV 213

Query:   114 LAAVKA---LQDKGIHAQMA-RQQEQDPTN-LYIANLPLNFKECDLESLLAKYVTVVSTR 168
                VK    L  K I  + A  + EQD T  +++  +  + +  + E   +++ T++  +
Sbjct:   214 DEVVKTQHILDGKVIDPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQ 273

Query:   169 ILRDNNN-TSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSG-LKKRGAGA 226
             ++ D +   S+G GF   +S D  D++ Q      +      + +K A+   ++++ +  
Sbjct:   274 LMLDKDTGQSRGFGFVTYDSADAVDRVCQ---NKFIDFKDRKIEIKRAEPRHMQQKSSNN 330

Query:   227 GGPNIYRGPGAEVRLWGRDSADSQLAYEHPM 257
             GG N           +G     +Q+ Y++PM
Sbjct:   331 GGNNGGNNMNRRGGNFGNQGDFNQM-YQNPM 360


>ZFIN|ZDB-GENE-050308-1 [details] [associations]
            symbol:pabpc1b "poly A binding protein, cytoplasmic 1
            b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
            HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
            GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
            EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
            UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
            Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
            InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
        Length = 634

 Score = 168 (64.2 bits), Expect = 7.4e-10, P = 7.4e-10
 Identities = 45/161 (27%), Positives = 80/161 (49%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I+ L +   +K L +  S +G I+S K + D+  N  +GYGFV FE+   A  A++ 
Sbjct:   100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEK 157

Query:   120 -----LQDKGIH-----AQMARQQE-----QDPTNLYIANLPLNFKECDLESLLAKYVTV 164
                  L D+ +      ++  R+ E     ++ TN+YI N   +  +  L+ + +KY   
Sbjct:   158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNA 217

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPG 205
             +S R++ D N  S+G GF   E  +   + +   NG  + G
Sbjct:   218 MSIRVMTDENGKSRGFGFVSFERHEDAQRAVDEMNGKEMNG 258

 Score = 157 (60.3 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 53/215 (24%), Positives = 95/215 (44%)

Query:    46 SPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFV 105
             +P  P+ P      +LY+  L QD T+  L    S  G I+S +   D  T +  GY +V
Sbjct:     2 NPSAPSYP----MASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYV 57

Query:   106 DFESGGYALAAVKALQDKGIHAQMAR--QQEQDPT-------NLYIANLPLNFKECDLES 156
             +F+    A  A+  +    I  +  R    ++DP+       N++I NL  +     L  
Sbjct:    58 NFQQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117

Query:   157 LLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFAD 216
               + +  ++S +++ D N  SKG GF   E+++  ++ I+  NG  L   ++  + +F  
Sbjct:   118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLL-NDRKVFVGRFKS 175

Query:   217 SGLKKRGAGAGGPNIYRGPGAEVRLWGRDSADSQL 251
                K+R A  G           ++ +G D  D +L
Sbjct:   176 R--KEREAELGA-RAKEFTNVYIKNFGEDMDDDKL 207

 Score = 106 (42.4 bits), Expect = 5.5e-07, Sum P(2) = 5.5e-07
 Identities = 24/71 (33%), Positives = 40/71 (56%)

Query:    59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVK 118
             TN+YI+   +D  D  L ++ S+YG  +S + + D+   K RG+GFV FE    A  AV 
Sbjct:   191 TNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDEN-GKSRGFGFVSFERHEDAQRAVD 249

Query:   119 ALQDKGIHAQM 129
              +  K ++ ++
Sbjct:   250 EMNGKEMNGKL 260

 Score = 82 (33.9 bits), Expect = 5.5e-07, Sum P(2) = 5.5e-07
 Identities = 29/110 (26%), Positives = 45/110 (40%)

Query:   131 RQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDK 190
             R       NLY+ NL     +  L    + + T+ S +++ D    SKG GF    S ++
Sbjct:   287 RMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMDGGR-SKGFGFVCFSSPEE 345

Query:   191 CDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRGAGAGGPNIYRGPGAEVR 240
               + +   NG  +  + +PL V  A    +K    A   N Y    A VR
Sbjct:   346 ATKAVTEMNGRIV--ATKPLYVALAQ---RKEERQAHLTNQYMQRMASVR 390


>WB|WBGene00001999 [details] [associations]
            symbol:hrp-1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
            "positive regulation of growth rate" evidence=IMP] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            [GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
            development" evidence=IMP] [GO:0008340 "determination of adult
            lifespan" evidence=IMP] [GO:0040015 "negative regulation of
            multicellular organism growth" evidence=IMP] [GO:0048477
            "oogenesis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
            [GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
            [GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
            [GO:0000781 "chromosome, telomeric region" evidence=IDA]
            [GO:0031581 "hemidesmosome assembly" evidence=IGI] [GO:0000398
            "mRNA splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA
            binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
            GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0048477 GO:GO:0003723 GO:GO:0040035 GO:GO:0030529
            GO:GO:0040015 GO:GO:0000398 GO:GO:0000781 eggNOG:COG0724
            GO:GO:0031581 GeneTree:ENSGT00700000104255 KO:K12741 EMBL:D10877
            EMBL:FO081370 PIR:S35500 RefSeq:NP_001023199.1
            RefSeq:NP_001040944.1 RefSeq:NP_001040945.1 RefSeq:NP_500326.2
            UniGene:Cel.7537 ProteinModelPortal:Q22037 SMR:Q22037 IntAct:Q22037
            STRING:Q22037 PaxDb:Q22037 PRIDE:Q22037 EnsemblMetazoa:F42A6.7a.1
            EnsemblMetazoa:F42A6.7a.2 GeneID:177101 KEGG:cel:CELE_F42A6.7
            UCSC:F42A6.7a.1 CTD:177101 WormBase:F42A6.7a WormBase:F42A6.7b
            WormBase:F42A6.7c WormBase:F42A6.7d InParanoid:Q22037 OMA:YGGGWGQ
            NextBio:895332 Uniprot:Q22037
        Length = 346

 Score = 155 (59.6 bits), Expect = 8.9e-10, Sum P(2) = 8.9e-10
 Identities = 49/165 (29%), Positives = 72/165 (43%)

Query:    44 NGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYG 103
             NGS      PE L K  +++ GLT +TTD  +    SQ+G I     + D TT + RG+G
Sbjct:    10 NGSGDASLEPENLRK--IFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFG 67

Query:   104 FVDFESGGYALAAVKA----LQDKGIHAQMA-------RQQEQDPTN-LYIANLPLNFKE 151
             FV F       AA+K     +  K +  + A       R +    T  LY++ +  +  E
Sbjct:    68 FVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTE 127

Query:   152 CDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMI 195
               L     KY TV  + I+ D      +G GF   +  D  DQ +
Sbjct:   128 DMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCV 172

 Score = 44 (20.5 bits), Expect = 8.9e-10, Sum P(2) = 8.9e-10
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query:   218 GLKKRGAGAGGPNIYRGPGAEVRLWGRDSADSQLAY 253
             G  ++G G GG   + G G +   WG  S   Q A+
Sbjct:   306 GGPQQGGGGGG---WGGQGQQQGGWGGQSGAQQWAH 338

 Score = 43 (20.2 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
 Identities = 8/13 (61%), Positives = 8/13 (61%)

Query:   224 AGAGGPNIYRGPG 236
             A  GGP  Y GPG
Sbjct:   233 AQRGGPGAYGGPG 245

 Score = 42 (19.8 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
 Identities = 9/15 (60%), Positives = 9/15 (60%)

Query:   223 GAGAGGPNIYRGPGA 237
             G G GGP    GPGA
Sbjct:   226 GGGWGGPAQRGGPGA 240


>TAIR|locus:2040625 [details] [associations]
            symbol:PAB7 "poly(A) binding protein 7" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
            "translation initiation factor activity" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
            KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
            UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
            SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
            GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
            OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
            Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
        Length = 609

 Score = 167 (63.8 bits), Expect = 9.0e-10, P = 9.0e-10
 Identities = 48/159 (30%), Positives = 76/159 (47%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++++ L +  T+  L +M  ++G I+S K +      K RGYGFV FE    A AA++ 
Sbjct:   113 NVFVKNLPESVTNAVLQDMFKKFGNIVSCK-VATLEDGKSRGYGFVQFEQEDAAHAAIQT 171

Query:   120 LQ-----DKGIHAQ--MARQQEQDP----TNLYIANLPLNFKECDLESLLAKYVTVVSTR 168
             L      DK I+    M +     P    TNLY+ NL  +  E  L    A++  +VS  
Sbjct:   172 LNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLA 231

Query:   169 ILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSK 207
             I +D N   +G  F   ++ +   +  +  NG+   GSK
Sbjct:   232 IAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKF-GSK 269

 Score = 132 (51.5 bits), Expect = 9.9e-06, P = 9.9e-06
 Identities = 39/180 (21%), Positives = 80/180 (44%)

Query:    44 NGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYG 103
             + +  + +G       +LY+  L    T+  L +  +++  + S +   D ++ +   YG
Sbjct:     9 HAADASSSGSSSPVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYG 68

Query:   104 FVDFESGGYALAAVKALQDKGIHAQMAR---------QQEQDPTNLYIANLPLNFKECDL 154
             + +F S   A  A++   +  ++ +M R          +     N+++ NLP +     L
Sbjct:    69 YANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVL 128

Query:   155 ESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKF 214
             + +  K+  +VS ++    +  S+G GF + E +D     IQ  N ST+   KE  + KF
Sbjct:   129 QDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLN-STIVADKEIYVGKF 187

 Score = 96 (38.9 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
 Identities = 26/106 (24%), Positives = 51/106 (48%)

Query:   115 AAVKALQDKGIHAQMARQQEQDP-----TNLYIANLPLNFKECDLESLLAKYVTVVSTRI 169
             A  KA +++ +  Q   + E+       +N+Y+ N+ +   E +L    ++  T+ ST++
Sbjct:   276 AQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKL 335

Query:   170 LRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFA 215
             + D    SKG GF    + ++    ++ F+G    G  +PL V  A
Sbjct:   336 MCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHG--KPLYVAIA 379

 Score = 93 (37.8 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
 Identities = 21/57 (36%), Positives = 33/57 (57%)

Query:    53 PEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFES 109
             PE+   TNLY++ L  D ++  L    +++G I+S  AI       CRGY FV+F++
Sbjct:   196 PEE-KYTNLYMKNLDADVSEDLLREKFAEFGKIVSL-AIAKDENRLCRGYAFVNFDN 250


>ASPGD|ASPL0000000406 [details] [associations]
            symbol:AN6501 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301 EMBL:AACD01000109
            eggNOG:COG0724 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
            RefSeq:XP_664105.1 ProteinModelPortal:Q5AYX9 SMR:Q5AYX9
            STRING:Q5AYX9 EnsemblFungi:CADANIAT00007269 GeneID:2870231
            KEGG:ani:AN6501.2 OMA:GDQAERM Uniprot:Q5AYX9
        Length = 352

 Score = 163 (62.4 bits), Expect = 9.1e-10, P = 9.1e-10
 Identities = 70/270 (25%), Positives = 112/270 (41%)

Query:    54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDF---ESG 110
             EQ  +  +YI  L +  +D  +  +  Q G I++     D+ T   +GYGFV+F   E  
Sbjct:     8 EQDKEATVYIGNLDERVSDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFNSEEDA 67

Query:   111 GYALAAVKALQ--DKGIHAQMARQQEQDPTN----LYIANLPLNFKECDLESLLAKYVTV 164
              YA   +  ++   K I    A   +Q        L++ NL     E  L    +++  +
Sbjct:    68 EYASRIMNGIRLYGKPIRVNKASADKQKSVEIGAELFVGNLDPMVTEQVLYDTFSRFGNL 127

Query:   165 VST-RILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRG 223
             V+  ++ RD++N SKG GF      +  D  I   NG  L   +  + V++A    KK G
Sbjct:   128 VNLPKVARDDSNLSKGYGFVSFADFESSDAAIANMNGQYLMNKQ--VSVQYA---YKKDG 182

Query:   224 AGAG-GPNIYRGPGAEVRLWGRDSADSQLA--YEHPMTP-IPATIQYQRFTAGPG--GTG 277
              G   G    R   A+ R          L   +  P  P +PA +  +  + GP   G G
Sbjct:   183 KGERHGDQAERMLAAQARKHNVQVPTQALPPQFTAPAAPAMPADMS-RPMSTGPADQGMG 241

Query:   278 HIP------AGYTPWVPTQYVMPAPHMSQV 301
              +P       G++P V TQ  +  P +  V
Sbjct:   242 RVPMLPPQLVGFSPNVATQQSLARPGLPSV 271


>ZFIN|ZDB-GENE-000501-2 [details] [associations]
            symbol:celf3a "cugbp, Elav-like family member 3a"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-000501-2 GO:GO:0005634 GO:GO:0005737
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
            eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
            EMBL:AB032725 EMBL:BX248499 EMBL:BC060923 IPI:IPI00504951
            RefSeq:NP_571569.2 UniGene:Dr.8323 ProteinModelPortal:Q9IBD1
            SMR:Q9IBD1 Ensembl:ENSDART00000039629 GeneID:57922 KEGG:dre:57922
            CTD:57922 OMA:MQHYTAT OrthoDB:EOG4RJG30 NextBio:20891938
            Bgee:Q9IBD1 Uniprot:Q9IBD1
        Length = 452

 Score = 165 (63.1 bits), Expect = 9.3e-10, P = 9.3e-10
 Identities = 48/172 (27%), Positives = 81/172 (47%)

Query:    61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKAL 120
             L+I  + ++  +KDL  +  Q+G I     I DK T   +G  F+ + +   AL A  AL
Sbjct:     9 LFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQNAL 68

Query:   121 QDKGIHAQMARQQEQDPTN--------LYIANLPLNFKECDLESLLAKYVTVVSTRILRD 172
              ++     M R  +  P +        L++  L     + D+  +   + ++    +LR 
Sbjct:    69 HEQKTLPGMNRPIQVKPADSEGRGDRKLFVGMLGKQLSDADVRKMFEPFGSIEECTVLRG 128

Query:   173 NNNTSKGVGFARLESKDKCDQMIQLFNGS-TLPGSKEPLLVKFADSGLKKRG 223
              +  SKG  F + +S  +    I   +GS TLPG+   L+VKFAD+  K+RG
Sbjct:   129 PDGASKGCAFVKYQSNAEAQAAISALHGSRTLPGASSSLVVKFADTE-KERG 179

 Score = 129 (50.5 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 32/103 (31%), Positives = 56/103 (54%)

Query:    50 PTGPEQLSKT------NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYG 103
             P  P+QL +       N++I  L Q+ TD +++ M   +G +IS K  +D+ TN+ + +G
Sbjct:   352 PQQPQQLQQREGPEGCNIFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFG 411

Query:   104 FVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLP 146
             FV F++   A AA++A+    I  +  + Q + P +   AN P
Sbjct:   412 FVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD---ANRP 451


>UNIPROTKB|H3BPI5 [details] [associations]
            symbol:PABPC3 "Polyadenylate-binding protein 3"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
            Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
        Length = 255

 Score = 158 (60.7 bits), Expect = 1.0e-09, P = 1.0e-09
 Identities = 55/215 (25%), Positives = 95/215 (44%)

Query:    46 SPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFV 105
             +P TP+ P      +LY+  L  D T+  L    S  GPI+S +   D  T+    Y +V
Sbjct:     2 NPSTPSYPT----ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYV 57

Query:   106 DFESGGYALAAVKALQDKGIHAQMAR--QQEQDPT-------NLYIANLPLNFKECDLES 156
             +F+    A  A+  +    I  +  R    ++DP+       N+++ NL  +     L  
Sbjct:    58 NFQHTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYD 117

Query:   157 LLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFAD 216
              ++ +  ++S  ++ D N  SKG GF   E+ +  ++ I+  NG  L G K   + +F  
Sbjct:   118 TVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKV-FVGQFKS 175

Query:   217 SGLKKRGAGAGGPNIYRGPGAEVRLWGRDSADSQL 251
                K+R A  G       P   ++ +G D  D +L
Sbjct:   176 R--KEREAELGA-RAKEFPNVYIKNFGEDMDDERL 207

 Score = 144 (55.7 bits), Expect = 6.0e-08, P = 6.0e-08
 Identities = 40/156 (25%), Positives = 72/156 (46%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++++ L +   +K L +  S +G I+S   + D+  N  +GYGFV FE+   A  A+K 
Sbjct:   100 NIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKK 157

Query:   120 LQD------KGIHAQMARQQEQDPT---------NLYIANLPLNFKECDLESLLAKYVTV 164
             +        K    Q   ++E++           N+YI N   +  +  L+ L  K+   
Sbjct:   158 MNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPA 217

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNG 200
             +S +++ D +  SKG GF   E  +   + +   NG
Sbjct:   218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253


>UNIPROTKB|Q6K271 [details] [associations]
            symbol:P0415D04.46-1 "FCA" species:39947 "Oryza sativa
            Japonica Group" [GO:0003723 "RNA binding" evidence=ISS] [GO:0009909
            "regulation of flower development" evidence=ISS] [GO:0044428
            "nuclear part" evidence=ISS] InterPro:IPR000504 InterPro:IPR001202
            InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397
            PRINTS:PR00961 PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360
            SMART:SM00456 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            GO:GO:0009790 GO:GO:0031048 GO:GO:0009909 GO:GO:0009553
            Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0044428 EMBL:AY654584
            EMBL:AY730687 EMBL:AP006062 EnsemblPlants:LOC_Os09g03610.1
            EnsemblPlants:LOC_Os09g03610.2 OMA:WTEHTSP Uniprot:Q6K271
        Length = 738

 Score = 167 (63.8 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 48/193 (24%), Positives = 94/193 (48%)

Query:    61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKAL 120
             L+I  + +  T+ D+  +  ++G ++    I D+ T + +G  FV + +   A  A++AL
Sbjct:   124 LFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIRAL 183

Query:   121 QDK----G----IHAQMAR-QQEQDPT---NLYIANLPLNFKECDLESLLAKYVTVVSTR 168
              ++    G    I  + A  ++E+       L++A+L       ++E + A Y  V    
Sbjct:   184 HNQYTLPGAMGPIQVRYADGERERHGAIEHKLFVASLNKQATAKEIEEIFAPYGHVEDVY 243

Query:   169 ILRDNNNTSKGVGFARLESKDKCDQMIQLFNGS-TLPGSKEPLLVKFADSGLKKRGAGAG 227
             I++D    S+G GF +  S++     +   +G+  + G ++PL+++FAD    + G   G
Sbjct:   244 IMKDGMRQSRGCGFVKFSSREPALAAMSALSGNYVMRGCEQPLIIRFADPKRPRPGESRG 303

Query:   228 GPNIYRGPGAEVR 240
             GP  + GPG   R
Sbjct:   304 GP-AFGGPGFSPR 315


>UNIPROTKB|Q6WQT6 [details] [associations]
            symbol:Q6WQT6 "Flowering time control protein isoform
            OsFCA-1" species:39946 "Oryza sativa Indica Group" [GO:0003723 "RNA
            binding" evidence=ISS] [GO:0009909 "regulation of flower
            development" evidence=ISS] [GO:0044428 "nuclear part" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR001202 InterPro:IPR002343
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397 PRINTS:PR00961
            PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360 SMART:SM00456
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009790
            GO:GO:0031048 GO:GO:0009909 GO:GO:0009553 Gene3D:2.20.70.10
            SUPFAM:SSF51045 GO:GO:0044428 EMBL:AY274928
            ProteinModelPortal:Q6WQT6 KEGG:dosa:Os09t0123200-01 Gramene:Q6WQT6
            Uniprot:Q6WQT6
        Length = 738

 Score = 167 (63.8 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 48/193 (24%), Positives = 94/193 (48%)

Query:    61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKAL 120
             L+I  + +  T+ D+  +  ++G ++    I D+ T + +G  FV + +   A  A++AL
Sbjct:   124 LFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIRAL 183

Query:   121 QDK----G----IHAQMAR-QQEQDPT---NLYIANLPLNFKECDLESLLAKYVTVVSTR 168
              ++    G    I  + A  ++E+       L++A+L       ++E + A Y  V    
Sbjct:   184 HNQYTLPGAMGPIQVRYADGERERHGAIEHKLFVASLNKQATAKEIEEIFAPYGHVEDVY 243

Query:   169 ILRDNNNTSKGVGFARLESKDKCDQMIQLFNGS-TLPGSKEPLLVKFADSGLKKRGAGAG 227
             I++D    S+G GF +  S++     +   +G+  + G ++PL+++FAD    + G   G
Sbjct:   244 IMKDGMRQSRGCGFVKFSSREPALAAMSALSGNYVMRGCEQPLIIRFADPKRPRPGESRG 303

Query:   228 GPNIYRGPGAEVR 240
             GP  + GPG   R
Sbjct:   304 GP-AFGGPGFSPR 315


>FB|FBgn0262475 [details] [associations]
            symbol:bru-2 "bruno-2" species:7227 "Drosophila melanogaster"
            [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005575
            "cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0017148 "negative regulation of translation"
            evidence=ISA] [GO:0003723 "RNA binding" evidence=ISA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 EMBL:AE014134 GO:GO:0017148 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00560000076837
            RefSeq:NP_001036356.1 UniGene:Dm.412 ProteinModelPortal:Q0E8R3
            SMR:Q0E8R3 PRIDE:Q0E8R3 EnsemblMetazoa:FBtr0304856
            EnsemblMetazoa:FBtr0332233 GeneID:250811 KEGG:dme:Dmel_CG43065
            UCSC:CG31761-RE CTD:250811 FlyBase:FBgn0262475 OMA:AHVANGN
            PhylomeDB:Q0E8R3 GenomeRNAi:250811 NextBio:843510 Bgee:Q0E8R3
            Uniprot:Q0E8R3
        Length = 893

 Score = 168 (64.2 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 50/185 (27%), Positives = 82/185 (44%)

Query:    46 SPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFV 105
             SP +           +++  + +   +  L  M  Q+GP+ +   + DK T+  RG  FV
Sbjct:   282 SPDSIKDQPDADNIKMFVGQIPKTWDETRLRQMFEQFGPVHTLNVLRDKVTSISRGCCFV 341

Query:   106 DFESGGYALAAVKALQD----KGIH--AQM--ARQQEQDPTNLYIANLPLNFKECDLESL 157
              + +   AL A  AL +     G+H   QM  A  + ++   L++  L   + E D+  L
Sbjct:   342 TYYTRKAALRAQDALHNIKTLDGMHHPIQMKPADSENRNERKLFVGMLNKKYTEADVRQL 401

Query:   158 LAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQ-LFNGSTLPGSKEPLLVKFAD 216
                + T+    +LRD    SKG  F    +K      I+ L    T+ G   PL+VKFAD
Sbjct:   402 FTGHGTIEECTVLRDQAGQSKGCAFVTFATKQNAIGAIKALHQSQTMEGCSAPLVVKFAD 461

Query:   217 SGLKK 221
             +  +K
Sbjct:   462 TQKEK 466

 Score = 121 (47.7 bits), Expect = 0.00028, P = 0.00028
 Identities = 30/99 (30%), Positives = 53/99 (53%)

Query:    35 PITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDK 94
             P+TT+ +Q   +  T    E    +NL+I  L Q+  D DL +    +G ++S K  +DK
Sbjct:   784 PVTTSALQAAAAGVTGKQIEGPDGSNLFIYHLPQEFIDTDLASTFLPFGNVLSAKVFIDK 843

Query:    95 TTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQ 133
              TN  + +GFV +++   A AA++A+    I ++  + Q
Sbjct:   844 QTNLSKCFGFVSYDNPHSANAAIQAMHGFQIGSKRLKVQ 882


>WB|WBGene00003902 [details] [associations]
            symbol:pab-1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0040010 "positive regulation of growth
            rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
            [GO:0009792 "embryo development ending in birth or egg hatching"
            evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
            evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
            [GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
            [GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
            "receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
            evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
            "P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
            body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
            GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
            GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
            GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
            GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
            NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
            ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
            MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
            EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
            EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
            EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
            WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
            ArrayExpress:Q9U302 Uniprot:Q9U302
        Length = 646

 Score = 165 (63.1 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
 Identities = 46/188 (24%), Positives = 79/188 (42%)

Query:    47 PGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVD 106
             PG        +  +LY+  L  D  +  L    S  GP++S +   D  T    GY +V+
Sbjct:    20 PGQNQTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVN 79

Query:   107 FESGGYALAAVKALQDKGIHAQMAR--QQEQDPT-------NLYIANLPLNFKECDLESL 157
             F+    A  A+  +  + +H +  R    ++DP        N++I NL        +   
Sbjct:    80 FQQPADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDT 139

Query:   158 LAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADS 217
              + +  ++S ++  D +  SKG GF   E+++     IQ  NG  L G K+  + KF   
Sbjct:   140 FSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAG-KKVFVGKFQPR 198

Query:   218 GLKKRGAG 225
               + R  G
Sbjct:   199 AQRNRELG 206

 Score = 142 (55.0 bits), Expect = 8.3e-07, Sum P(2) = 8.3e-07
 Identities = 44/162 (27%), Positives = 76/162 (46%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFES---------- 109
             N++I+ L +   +K + +  S +G I+S K  +D+     +GYGFV FE+          
Sbjct:   121 NIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDED-GFSKGYGFVHFETEEAAQNAIQK 179

Query:   110 -GGYALAAVKALQDK-GIHAQMARQQEQDP---TNLYIANLPLNFKECDLESLLAKYVTV 164
               G  LA  K    K    AQ  R+  +     TN+Y+ N   ++ +  LE L AK+  +
Sbjct:   180 VNGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNI 239

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGS 206
              S  ++      SKG GF    + ++ +  +Q  + ST+ G+
Sbjct:   240 TSCEVMTVEGK-SKGFGFVAFANPEEAETAVQALHDSTIEGT 280

 Score = 110 (43.8 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
 Identities = 52/185 (28%), Positives = 75/185 (40%)

Query:   120 LQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKG 179
             L+ K    +  R Q+    NLY+ NL     +  L+     Y  + S +++ D N  SKG
Sbjct:   299 LKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKG 358

Query:   180 VGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRGAGAGGPNIYRGPGAEV 239
              GF   E  ++    +   N S +  SK PL V  A    +K    A   + Y    A +
Sbjct:   359 FGFVCFEKPEEATSAVTEMN-SKMVCSK-PLYVAIAQ---RKEDRRAQLASQYMQRLASM 413

Query:   240 RLWGRDSADSQLAYEHPMTPIPA-----TIQYQRFTAG------PGGTGHIPAGYTPWVP 288
             R+ G  +      Y +P  P P       +Q QR  AG      PGG   +   Y P V 
Sbjct:   414 RMHG--NVPGAAMY-NPTQPGPGYYVANPMQQQRNFAGGQQMVRPGGRWGMQNQY-P-VQ 468

Query:   289 TQYVM 293
              QY+M
Sbjct:   469 NQYMM 473

 Score = 78 (32.5 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
 Identities = 20/67 (29%), Positives = 34/67 (50%)

Query:    59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVK 118
             TN+Y++        + L  + +++G I S + +      K +G+GFV F +   A  AV+
Sbjct:   213 TNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMT--VEGKSKGFGFVAFANPEEAETAVQ 270

Query:   119 ALQDKGI 125
             AL D  I
Sbjct:   271 ALHDSTI 277

 Score = 40 (19.1 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
 Identities = 19/82 (23%), Positives = 26/82 (31%)

Query:   223 GAGAGGPNIYRGPGAEVRLWGRDSADSQLAYEHPMTPIPATIQYQRFTAGPGGTGHIPAG 282
             G    GP   + PG + +   R     Q     P  P      YQ +   P G   +  G
Sbjct:   508 GVRMQGPPRTQNPGVQQQNVPRPPQQQQQQRPAPTGPKAPPQPYQAYQQRPQGI--VIGG 565

Query:   283 YTPWVPTQYVMPAPHMSQVEVL 304
               P         AP   Q ++L
Sbjct:   566 QEPLTSAMLAAAAPQ-EQKQLL 586


>WB|WBGene00001340 [details] [associations]
            symbol:etr-1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            [GO:0002119 "nematode larval development" evidence=IMP] [GO:0010171
            "body morphogenesis" evidence=IMP] [GO:0048477 "oogenesis"
            evidence=IMP] [GO:0018991 "oviposition" evidence=IMP] [GO:0040011
            "locomotion" evidence=IMP] [GO:0040002 "collagen and
            cuticulin-based cuticle development" evidence=IMP] [GO:0000003
            "reproduction" evidence=IMP] [GO:0006915 "apoptotic process"
            evidence=IMP] [GO:0061199 "striated muscle contraction involved in
            embryonic body morphogenesis" evidence=IMP] [GO:0008340
            "determination of adult lifespan" evidence=IMP] [GO:0005634
            "nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008340
            GO:GO:0009792 GO:GO:0018991 GO:GO:0006915 GO:GO:0002119
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011
            GO:GO:0048477 GO:GO:0003676 GO:GO:0040002 KO:K13207
            HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837 EMBL:FO081419
            UniGene:Cel.5079 GeneID:173401 KEGG:cel:CELE_T01D1.2
            UCSC:T01D1.2a.1 CTD:173401 NextBio:879497 RefSeq:NP_001122631.1
            ProteinModelPortal:A8DYS0 SMR:A8DYS0 IntAct:A8DYS0 STRING:A8DYS0
            EnsemblMetazoa:T01D1.2f.1 EnsemblMetazoa:T01D1.2f.2
            EnsemblMetazoa:T01D1.2f.3 EnsemblMetazoa:T01D1.2f.4
            EnsemblMetazoa:T01D1.2f.5 EnsemblMetazoa:T01D1.2f.6
            WormBase:T01D1.2f InParanoid:A8DYS0 ArrayExpress:A8DYS0
            Uniprot:A8DYS0
        Length = 588

 Score = 165 (63.1 bits), Expect = 1.5e-09, P = 1.5e-09
 Identities = 53/211 (25%), Positives = 94/211 (44%)

Query:    37 TTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTT 96
             T +    N    +P+ P+      +++  + +   + D   +  +YG + S   + DK+T
Sbjct:    34 TPSTAADNDVSPSPSEPDT-DAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKST 92

Query:    97 NKCRGYGFVDFESGGYALAAVKALQD----KGIH--AQM--ARQQEQDPTNLYIANLPLN 148
                +G  FV F     A+ A  AL +    +G+H   QM  A  + ++   L+I  L   
Sbjct:    93 QASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQMKPADTENRNERKLFIGQLSKK 152

Query:   149 FKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMI--QLFNGSTLPGS 206
               E +L  + AK+  +    +LRD +  S+G  F    ++  C  +   ++ +  T+ G 
Sbjct:   153 HNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRS-CAVVATKEMHHSQTMEGC 211

Query:   207 KEPLLVKFADSGLKK--------RGAGAGGP 229
               PL+VKFAD+   K         G+GAG P
Sbjct:   212 SAPLVVKFADTQKDKDVKTKSMITGSGAGSP 242

 Score = 138 (53.6 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 38/106 (35%), Positives = 56/106 (52%)

Query:    37 TTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTT 96
             TT+  Q  G+ G   GP+     NL+I  L QD  D DLIN  + +G I+S K  +DK T
Sbjct:   485 TTSAAQMVGN-GDVKGPDG---ANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVT 540

Query:    97 NKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQ-EQDPTNLY 141
             N  + +GFV +E+   A  A+ A+    I ++  + Q + D  N Y
Sbjct:   541 NLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQLKVDRGNPY 586


>DICTYBASE|DDB_G0267714 [details] [associations]
            symbol:sf3b4 "splicing factor 3B subunit 4"
            species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISS]
            [GO:0005681 "spliceosomal complex" evidence=IEA;ISS] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            dictyBase:DDB_G0267714 GenomeReviews:CM000150_GR GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AAFI02000003
            GO:GO:0005681 GO:GO:0003723 HSSP:Q15427 eggNOG:NOG282907 KO:K12831
            RefSeq:XP_647248.1 ProteinModelPortal:Q55GD6 SMR:Q55GD6
            STRING:Q55GD6 EnsemblProtists:DDB0233172 GeneID:8616053
            KEGG:ddi:DDB_G0267714 OMA:ERNHEAC Uniprot:Q55GD6
        Length = 359

 Score = 161 (61.7 bits), Expect = 1.6e-09, P = 1.6e-09
 Identities = 50/176 (28%), Positives = 85/176 (48%)

Query:    61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGG---YALAAV 117
             L IR L    T+  L+ +  Q  P++      DK T +  G  +V+F+S     YAL  +
Sbjct:    15 LLIRDLDPMVTESLLMELFIQAAPVVKVFIPKDKLTQQHSGRAYVEFQSSSDAEYALKVM 74

Query:   118 KALQ--DKGIHAQMARQQEQD-PTNLYIANLPLNFKECDLESLLAKYVTVVST-RILRDN 173
             K ++  +K I  +   + + D   NL+I NL  +  E  L    +++ T++ T +++RD 
Sbjct:    75 KFVRLFNKEIKIKKENKDKVDIGANLFIGNLDADVDERILHDTFSRFGTIIFTPKVMRDE 134

Query:   174 NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFA---DSGLKKRGAGA 226
             N  SKG  F   +S +  D  I+  N   L    +P+ V +A   DS  ++ G+ A
Sbjct:   135 NGVSKGFAFINFDSFEASDAAIEAMNSQFL--CNKPISVTYARKKDSN-ERHGSSA 187


>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
            symbol:pabpc1a "poly A binding protein,
            cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
            HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
            EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
            UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
            GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
            NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
        Length = 634

 Score = 165 (63.1 bits), Expect = 1.7e-09, P = 1.7e-09
 Identities = 45/163 (27%), Positives = 81/163 (49%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I+ L +   +K L +  S +G I+S K + D+  N  +GYGFV FE+   A  A++ 
Sbjct:   100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEK 157

Query:   120 -----LQDKGIH-----AQMARQQE-----QDPTNLYIANLPLNFKECDLESLLAKYVTV 164
                  L D+ +      ++  R+ E     ++ TN+YI N   +  +  L+ +  KY   
Sbjct:   158 MNGMLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPA 217

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSK 207
             +S R++ D++  SKG GF   E  +   + +   NG  + G +
Sbjct:   218 LSIRVMTDDSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQ 260

 Score = 157 (60.3 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 53/215 (24%), Positives = 94/215 (43%)

Query:    46 SPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFV 105
             +P  P+ P      +LY+  L  D T+  L    S  GPI+S +   D  T +  GY +V
Sbjct:     2 NPSAPSYP----MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYV 57

Query:   106 DFESGGYALAAVKALQDKGIHAQMAR--QQEQDPT-------NLYIANLPLNFKECDLES 156
             +F+    A  A+  +    I  +  R    ++DP+       N++I NL  +     L  
Sbjct:    58 NFQQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117

Query:   157 LLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFAD 216
               + +  ++S +++ D N  SKG GF   E+ +  ++ I+  NG  L   ++  + +F  
Sbjct:   118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLL-NDRKVFVGRFKS 175

Query:   217 SGLKKRGAGAGGPNIYRGPGAEVRLWGRDSADSQL 251
                K+R A  G           ++ +G D  D +L
Sbjct:   176 R--KEREAEMGA-RAKEFTNVYIKNFGEDMDDEKL 207

 Score = 107 (42.7 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
 Identities = 27/87 (31%), Positives = 46/87 (52%)

Query:    59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAV- 117
             TN+YI+   +D  D+ L  +  +YGP +S + + D +  K +G+GFV FE    A  AV 
Sbjct:   191 TNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDS-GKSKGFGFVSFERHEDAQRAVD 249

Query:   118 ----KALQDKGIHAQMARQQEQDPTNL 140
                 K +  K ++   A+++ +  T L
Sbjct:   250 EMNGKEMNGKQVYVGRAQKKGERQTEL 276

 Score = 77 (32.2 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
 Identities = 21/85 (24%), Positives = 37/85 (43%)

Query:   131 RQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDK 190
             R       NLY+ NL     +  L    + + T+ S +++ +    SKG GF    S ++
Sbjct:   287 RMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEGGR-SKGFGFVCFSSPEE 345

Query:   191 CDQMIQLFNGSTLPGSKEPLLVKFA 215
               + +   NG  +  + +PL V  A
Sbjct:   346 ATKAVTEMNGRIV--ATKPLYVALA 368


>POMBASE|SPAC31G5.01 [details] [associations]
            symbol:sap49 "U2 snRNP-associated RNA-binding protein
            Sap49" species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA
            binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005686 "U2 snRNP" evidence=ISO] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
            evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 PomBase:SPAC31G5.01 GO:GO:0005829
            EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005686 GO:GO:0045292
            eggNOG:NOG282907 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
            RefSeq:NP_594001.2 ProteinModelPortal:O14102 SMR:O14102
            IntAct:O14102 STRING:O14102 EnsemblFungi:SPAC31G5.01.1
            GeneID:2542426 KEGG:spo:SPAC31G5.01 OMA:QVARDEN NextBio:20803483
            Uniprot:O14102
        Length = 335

 Score = 160 (61.4 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 53/176 (30%), Positives = 79/176 (44%)

Query:    61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDF---ESGGYA---L 114
             +Y+  L +  TD  L  +C Q GP+++     D+  N   G+GF +F   +   YA   L
Sbjct:    13 IYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQIL 72

Query:   115 AAVKALQDKGIHAQMARQQEQDPT----NLYIANL-PLNFKECDLESLLAKYVTVVSTRI 169
               VK L  K I    A Q     T    NL++ NL PL  +    ++  A    V + ++
Sbjct:    73 NQVK-LFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQV 131

Query:   170 LRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRGAG 225
              RD N  SKG GF   +S +  D  I+  N   L    +P+ V +A    K+ G G
Sbjct:   132 ARDENGRSKGYGFVSYDSFETADAAIEAMNNQFL--MNKPITVSYA---FKREGKG 182


>UNIPROTKB|P20965 [details] [associations]
            symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
            species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
            "poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
            initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
            self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
            evidence=IDA] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
            GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
            GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
            EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
            ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
            KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
        Length = 633

 Score = 164 (62.8 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 45/161 (27%), Positives = 79/161 (49%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I+ L +   +K L +  S +G I+S K + D+  N  +GYGFV FE+   A  A+  
Sbjct:   100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDK 157

Query:   120 -----LQDKGIH-----AQMARQQE-----QDPTNLYIANLPLNFKECDLESLLAKYVTV 164
                  L D+ +      ++  R+ E     ++ TN+YI N   +  +  L+ +  KY   
Sbjct:   158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPA 217

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPG 205
             +S +++ D+N  SKG GF   E  +   + +   NG  + G
Sbjct:   218 LSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNG 258

 Score = 161 (61.7 bits), Expect = 4.9e-09, P = 4.9e-09
 Identities = 54/215 (25%), Positives = 95/215 (44%)

Query:    46 SPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFV 105
             +P  P+ P      +LY+  L QD T+  L    S  GPI+S +   D  T +  GY +V
Sbjct:     2 NPSAPSYP----MASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYV 57

Query:   106 DFESGGYALAAVKALQDKGIHAQMAR--QQEQDPT-------NLYIANLPLNFKECDLES 156
             +F+    A  A+  +    I  +  R    ++DP+       N++I NL  +     L  
Sbjct:    58 NFQQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117

Query:   157 LLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFAD 216
               + +  ++S +++ D N  SKG GF   E+++  ++ I   NG  L   ++  + +F  
Sbjct:   118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLL-NDRKVFVGRFKS 175

Query:   217 SGLKKRGAGAGGPNIYRGPGAEVRLWGRDSADSQL 251
                K+R A  G           ++ +G D  D +L
Sbjct:   176 R--KEREAELGA-RAKEFTNVYIKNFGDDMNDERL 207

 Score = 113 (44.8 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
 Identities = 25/70 (35%), Positives = 37/70 (52%)

Query:    59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVK 118
             TN+YI+    D  D+ L  M  +YGP +S K + D    K +G+GFV FE    A  AV 
Sbjct:   191 TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDN-GKSKGFGFVSFERHEDAQKAVD 249

Query:   119 ALQDKGIHAQ 128
              +  K ++ +
Sbjct:   250 EMNGKDMNGK 259

 Score = 76 (31.8 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
 Identities = 27/103 (26%), Positives = 44/103 (42%)

Query:   139 NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLF 198
             NLY+ NL     +  L      + T+ S +++ +    SKG GF    S ++  + +   
Sbjct:   295 NLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEGGR-SKGFGFVCFSSPEEATKAVTEM 353

Query:   199 NGSTLPGSKEPLLVKFADSGLKKRGAGAGGPNIYRGPGAEVRL 241
             NG  +  + +PL V  A    +K    A   N Y    A VR+
Sbjct:   354 NGRIV--ATKPLYVALAQ---RKEERQAHLTNQYMQRMASVRV 391


>UNIPROTKB|B4DHA8 [details] [associations]
            symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107646
            IPI:IPI00853277 UniGene:Hs.435976 UniGene:Hs.600908 HGNC:HGNC:14015
            EMBL:AC015961 EMBL:AC090386 EMBL:AC093332 EMBL:AC129908
            EMBL:AK295009 ProteinModelPortal:B4DHA8 STRING:B4DHA8
            Ensembl:ENST00000588597 UCSC:uc002lai.2 Bgee:B4DHA8 Uniprot:B4DHA8
        Length = 454

 Score = 161 (61.7 bits), Expect = 2.8e-09, P = 2.8e-09
 Identities = 54/195 (27%), Positives = 88/195 (45%)

Query:    39 NNVQHNGSPGTP-TGP-EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTT 96
             N + H  SPG P T P +      L+I  + ++  +KDL  +  ++G I     + D+ T
Sbjct:    34 NGLSH--SPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFT 91

Query:    97 NKCRGYGFVDFESGGYALAAVKALQDK----G----IHAQMARQQEQDPTNLYIANLPLN 148
                +G  F+ +     AL A  AL ++    G    I  + A  + +    L++  L   
Sbjct:    92 GMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGDRKLFVGMLNKQ 151

Query:   149 FKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGS-TLPGSK 207
               E D+  L   +  +    ILR  +  SKG  F +  S  +    I   +GS T+PG+ 
Sbjct:   152 QSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGAS 211

Query:   208 EPLLVKFADSGLKKR 222
               L+VKFAD+  K+R
Sbjct:   212 SSLVVKFADTD-KER 225


>RGD|1311201 [details] [associations]
            symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
            HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
            GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
            IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
            MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
            KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
            NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
        Length = 643

 Score = 163 (62.4 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 45/163 (27%), Positives = 81/163 (49%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++++ L +    K L +  S +G I+S K + D+  N  +GYGFV FE+   A  A++ 
Sbjct:   100 NIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEEAERAIEK 157

Query:   120 -----LQDKGIH-----AQMARQQE-----QDPTNLYIANLPLNFKECDLESLLAKYVTV 164
                  L D+ +      ++  RQ E     ++ TN+YI NL  +  +  L+ L +++   
Sbjct:   158 MNGMFLNDRKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDLFSRFGPA 217

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSK 207
             +S +++ D +  SKG GF   E  +   + +   NG  L G +
Sbjct:   218 LSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQ 260

 Score = 157 (60.3 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 45/167 (26%), Positives = 79/167 (47%)

Query:    50 PTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFES 109
             P+ P   S  +LY+  L  D T+  L    S  GPI+S +   D+TT +  GY  V+F+ 
Sbjct:     3 PSDPSY-SLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQ 61

Query:   110 GGYALAAVKALQDKGIHAQMAR--QQEQDPT-------NLYIANLPLNFKECDLESLLAK 160
                A  A+  +    I  +  R    ++DP+       N+++ NL  +     L    + 
Sbjct:    62 LEDAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSA 121

Query:   161 YVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSK 207
             +  ++S +++ D N  SKG GF   E++++ ++ I+  NG  L   K
Sbjct:   122 FGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRK 167

 Score = 121 (47.7 bits), Expect = 9.2e-08, Sum P(2) = 9.2e-08
 Identities = 31/87 (35%), Positives = 50/87 (57%)

Query:    59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAV- 117
             TN+YI+ L +D  D+ L ++ S++GP +S K + D++  K +G+GFV FE    A  AV 
Sbjct:   191 TNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDES-GKSKGFGFVSFERHEDARKAVD 249

Query:   118 ----KALQDKGIHAQMARQQEQDPTNL 140
                 K L  K I+   A+++ +  T L
Sbjct:   250 EMNGKDLNGKQIYVGRAQKKVERQTEL 276

 Score = 73 (30.8 bits), Expect = 9.2e-08, Sum P(2) = 9.2e-08
 Identities = 20/77 (25%), Positives = 35/77 (45%)

Query:   139 NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLF 198
             NLY+ NL     +  L    + + T+ S ++  +    SKG GF    S ++  + +   
Sbjct:   305 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEGGR-SKGFGFVCFSSPEEATKAVTEM 363

Query:   199 NGSTLPGSKEPLLVKFA 215
             NG  +  + +PL V  A
Sbjct:   364 NGRIV--ATKPLYVALA 378


>UNIPROTKB|Q4R535 [details] [associations]
            symbol:CELF4 "CUGBP Elav-like family member 4" species:9541
            "Macaca fascicularis" [GO:0048026 "positive regulation of mRNA
            splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
            HOVERGEN:HBG107646 GO:GO:0048026 EMBL:AB169709
            ProteinModelPortal:Q4R535 SMR:Q4R535 Uniprot:Q4R535
        Length = 474

 Score = 161 (61.7 bits), Expect = 3.0e-09, P = 3.0e-09
 Identities = 54/195 (27%), Positives = 88/195 (45%)

Query:    39 NNVQHNGSPGTP-TGP-EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTT 96
             N + H  SPG P T P +      L+I  + ++  +KDL  +  ++G I     + D+ T
Sbjct:    34 NGLSH--SPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFT 91

Query:    97 NKCRGYGFVDFESGGYALAAVKALQDK----G----IHAQMARQQEQDPTNLYIANLPLN 148
                +G  F+ +     AL A  AL ++    G    I  + A  + +    L++  L   
Sbjct:    92 GMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGDRKLFVGMLNKQ 151

Query:   149 FKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGS-TLPGSK 207
               E D+  L   +  +    ILR  +  SKG  F +  S  +    I   +GS T+PG+ 
Sbjct:   152 QSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGAS 211

Query:   208 EPLLVKFADSGLKKR 222
               L+VKFAD+  K+R
Sbjct:   212 SSLVVKFADTD-KER 225


>UNIPROTKB|A6H776 [details] [associations]
            symbol:BRUNOL4 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0090394 "negative regulation of excitatory postsynaptic
            membrane potential" evidence=IEA] [GO:0048026 "positive regulation
            of mRNA splicing, via spliceosome" evidence=IEA] [GO:0006376 "mRNA
            splice site selection" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000381
            "regulation of alternative mRNA splicing, via spliceosome"
            evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
            spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000380 HOVERGEN:HBG107646
            KO:K13207 GO:GO:0048026 eggNOG:NOG251494 HOGENOM:HOG000004754
            GO:GO:0006376 GeneTree:ENSGT00560000076837 GO:GO:0000381 CTD:56853
            OMA:EDSEKNG EMBL:DAAA02056370 EMBL:DAAA02056371 EMBL:DAAA02056372
            EMBL:DAAA02056373 EMBL:DAAA02056374 EMBL:DAAA02056375
            EMBL:DAAA02056376 EMBL:DAAA02056377 EMBL:DAAA02056378 EMBL:BC146142
            IPI:IPI00907335 RefSeq:NP_001092538.1 UniGene:Bt.62140 SMR:A6H776
            Ensembl:ENSBTAT00000006498 GeneID:535177 KEGG:bta:535177
            InParanoid:A6H776 NextBio:20876649 Uniprot:A6H776
        Length = 475

 Score = 161 (61.7 bits), Expect = 3.0e-09, P = 3.0e-09
 Identities = 54/195 (27%), Positives = 88/195 (45%)

Query:    39 NNVQHNGSPGTP-TGP-EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTT 96
             N + H  SPG P T P +      L+I  + ++  +KDL  +  ++G I     + D+ T
Sbjct:    34 NGLSH--SPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFT 91

Query:    97 NKCRGYGFVDFESGGYALAAVKALQDK----G----IHAQMARQQEQDPTNLYIANLPLN 148
                +G  F+ +     AL A  AL ++    G    I  + A  + +    L++  L   
Sbjct:    92 GMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGDRKLFVGMLNKQ 151

Query:   149 FKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGS-TLPGSK 207
               E D+  L   +  +    ILR  +  SKG  F +  S  +    I   +GS T+PG+ 
Sbjct:   152 QSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGAS 211

Query:   208 EPLLVKFADSGLKKR 222
               L+VKFAD+  K+R
Sbjct:   212 SSLVVKFADTD-KER 225


>UNIPROTKB|H3BNY3 [details] [associations]
            symbol:PABPC3 "Polyadenylate-binding protein 3"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
            HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
            Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
        Length = 347

 Score = 158 (60.7 bits), Expect = 3.4e-09, P = 3.4e-09
 Identities = 55/215 (25%), Positives = 95/215 (44%)

Query:    46 SPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFV 105
             +P TP+ P      +LY+  L  D T+  L    S  GPI+S +   D  T+    Y +V
Sbjct:     2 NPSTPSYPT----ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYV 57

Query:   106 DFESGGYALAAVKALQDKGIHAQMAR--QQEQDPT-------NLYIANLPLNFKECDLES 156
             +F+    A  A+  +    I  +  R    ++DP+       N+++ NL  +     L  
Sbjct:    58 NFQHTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYD 117

Query:   157 LLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFAD 216
              ++ +  ++S  ++ D N  SKG GF   E+ +  ++ I+  NG  L G K   + +F  
Sbjct:   118 TVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKV-FVGQFKS 175

Query:   217 SGLKKRGAGAGGPNIYRGPGAEVRLWGRDSADSQL 251
                K+R A  G       P   ++ +G D  D +L
Sbjct:   176 R--KEREAELGA-RAKEFPNVYIKNFGEDMDDERL 207

 Score = 152 (58.6 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 42/163 (25%), Positives = 75/163 (46%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++++ L +   +K L +  S +G I+S   + D+  N  +GYGFV FE+   A  A+K 
Sbjct:   100 NIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKK 157

Query:   120 LQD------KGIHAQMARQQEQDPT---------NLYIANLPLNFKECDLESLLAKYVTV 164
             +        K    Q   ++E++           N+YI N   +  +  L+ L  K+   
Sbjct:   158 MNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPA 217

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSK 207
             +S +++ D +  SKG GF   E  +   + +   NG  L G +
Sbjct:   218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260


>UNIPROTKB|Q7ZWM3 [details] [associations]
            symbol:tnrc4-b "CUGBP Elav-like family member 3-B"
            species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
            mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646
            KO:K13207 GO:GO:0048026 EMBL:BC046942 RefSeq:NP_001080695.1
            UniGene:Xl.12160 ProteinModelPortal:Q7ZWM3 SMR:Q7ZWM3 GeneID:380387
            KEGG:xla:380387 CTD:380387 Xenbase:XB-GENE-5796640 Uniprot:Q7ZWM3
        Length = 462

 Score = 155 (59.6 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
 Identities = 48/173 (27%), Positives = 81/173 (46%)

Query:    61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKAL 120
             L+I  + ++  +KDL  +  Q+G I     I DK T   +G  F+ + +   AL A  AL
Sbjct:     9 LFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSAL 68

Query:   121 QDKGIHAQMARQQEQDPTN---------LYIANLPLNFKECDLESLLAKYVTVVSTRILR 171
              ++     M R  +  P +         L++  L     + D+  +   +  +    +LR
Sbjct:    69 HEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRRMFETFGNIDECTVLR 128

Query:   172 DNNNTSKGVGFARLESKDKCDQMIQLFNGS-TLPGSKEPLLVKFADSGLKKRG 223
               + TSKG  F + ++  +    I   +GS TLPG+   L+VKFAD+  K+RG
Sbjct:   129 GPDGTSKGCAFVKFQTHTEAQAAINALHGSRTLPGASSSLVVKFADTE-KERG 180

 Score = 131 (51.2 bits), Expect = 8.4e-06, P = 8.4e-06
 Identities = 31/95 (32%), Positives = 54/95 (56%)

Query:    52 GPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGG 111
             GPE     N++I  L Q+ TD +++ M   +G +IS K  +D+ TN+ + +GFV F++ G
Sbjct:   373 GPEGC---NIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPG 429

Query:   112 YALAAVKALQDKGIHAQMARQQEQDPTNLYIANLP 146
              A AA++++    I  +  + Q + P +   AN P
Sbjct:   430 SAQAAIQSMNGFQIGMKRLKVQLKRPKD---ANRP 461

 Score = 43 (20.2 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
 Identities = 10/27 (37%), Positives = 13/27 (48%)

Query:   249 SQLAYEHPMTPIPATIQYQRFTAGPGG 275
             +Q AY +PM  + A    Q  T  P G
Sbjct:   225 AQSAYLNPMATMAAVQMQQMATINPNG 251

 Score = 40 (19.1 bits), Expect = 7.7e-09, Sum P(2) = 7.7e-09
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query:   256 PMTPIPATIQYQRFTAGPGGTGHIPAGYTPWVPTQYVMPAPHMSQVEVL 304
             P++ IPAT+    ++A P  +   P+     + T  + P P  S V  L
Sbjct:   279 PVSAIPATLGVNGYSAVPTQSTVQPSSEA--IYTNGLHPYPAQSPVAQL 325


>UNIPROTKB|F1PXQ8 [details] [associations]
            symbol:CELF5 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13207
            GeneTree:ENSGT00560000076837 CTD:60680 OMA:DGMKDLD
            EMBL:AAEX03012581 RefSeq:XP_854891.3 Ensembl:ENSCAFT00000030591
            GeneID:612072 KEGG:cfa:612072 Uniprot:F1PXQ8
        Length = 485

 Score = 160 (61.4 bits), Expect = 4.1e-09, P = 4.1e-09
 Identities = 51/199 (25%), Positives = 90/199 (45%)

Query:    35 PITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDK 94
             P+ ++  +  G  G P G + L    L++  + ++  +KDL  +  Q+G I     + D 
Sbjct:    23 PVGSSGPEPPG--GQPDGMKDLDAIKLFVGQIPRNLDEKDLKPLFEQFGRIYELTVLKDP 80

Query:    95 TTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTN----------LYIAN 144
              T   +G  F+ + +   A+ A  AL ++     MAR  +  P +          L++  
Sbjct:    81 YTGMHKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESRGGRDRKLFVGM 140

Query:   145 LPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGS-TL 203
             L     E D+  L   +  +    +LR  + +SKG  F +  S  +    I   +GS T+
Sbjct:   141 LNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTM 200

Query:   204 PGSKEPLLVKFADSGLKKR 222
             PG+   L+VKFAD+  K+R
Sbjct:   201 PGASSSLVVKFADTD-KER 218

 Score = 119 (46.9 bits), Expect = 0.00021, P = 0.00021
 Identities = 30/84 (35%), Positives = 46/84 (54%)

Query:    52 GPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGG 111
             GPE     NL+I  L Q+  D +L  M   +G IIS+K  +D+ TN+ + +GFV F++  
Sbjct:   396 GPEGC---NLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPA 452

Query:   112 YALAAVKALQDKGIHAQMARQQEQ 135
              A  A++A+   G    M R + Q
Sbjct:   453 SAQTAIQAMN--GFQIGMKRLKVQ 474


>UNIPROTKB|F1NH81 [details] [associations]
            symbol:PABPC1 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
            EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
            Uniprot:F1NH81
        Length = 573

 Score = 161 (61.7 bits), Expect = 4.2e-09, P = 4.2e-09
 Identities = 45/163 (27%), Positives = 80/163 (49%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I+ L +   +K L +  S +G I+S K + D+  N  +GYGFV FE+   A  A++ 
Sbjct:    36 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEK 93

Query:   120 -----LQDKGIH-----AQMARQQE-----QDPTNLYIANLPLNFKECDLESLLAKYVTV 164
                  L D+ +      ++  R+ E     ++ TN+YI N   +  +  L+ L  K+   
Sbjct:    94 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPA 153

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSK 207
             +S +++ D +  SKG GF   E  +   + +   NG  L G +
Sbjct:   154 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 196

 Score = 113 (44.8 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
 Identities = 29/87 (33%), Positives = 47/87 (54%)

Query:    59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAV- 117
             TN+YI+   +D  D+ L  +  ++GP +S K + D++  K +G+GFV FE    A  AV 
Sbjct:   127 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVD 185

Query:   118 ----KALQDKGIHAQMARQQEQDPTNL 140
                 K L  K I+   A+++ +  T L
Sbjct:   186 EMNGKELNGKQIYVGRAQKKVERQTEL 212

 Score = 77 (32.2 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
 Identities = 27/102 (26%), Positives = 44/102 (43%)

Query:   139 NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLF 198
             NLY+ NL     +  L    + + T+ S +++ +    SKG GF    S ++  + +   
Sbjct:   231 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGR-SKGFGFVCFSSPEEATKAVTEM 289

Query:   199 NGSTLPGSKEPLLVKFADSGLKKRGAGAGGPNIYRGPGAEVR 240
             NG  +  + +PL V  A    +K    A   N Y    A VR
Sbjct:   290 NGRIV--ATKPLYVALAQ---RKEERQAHLTNQYMQRMASVR 326


>WB|WBGene00003903 [details] [associations]
            symbol:pab-2 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0009792 "embryo development ending in
            birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
            evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
            GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
            GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
            RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
            STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
            EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
            EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
            UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
            OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
        Length = 692

 Score = 162 (62.1 bits), Expect = 4.3e-09, P = 4.3e-09
 Identities = 51/200 (25%), Positives = 84/200 (42%)

Query:    41 VQHNGSPGTPTG-PEQL--SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTN 97
             V   G P T  G P     S  +LYI  L  D ++  L    S  GP++S +   D T+ 
Sbjct:    36 VIQQGPPPTNIGYPPNATYSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSR 95

Query:    98 KCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR--QQEQDPT-------NLYIANLPLN 148
                GY +V+F+    A  A+  +  + IH +  R    ++DP        N++I NL   
Sbjct:    96 LSLGYAYVNFQQPADAERALDTMNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRV 155

Query:   149 FKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKE 208
                  +    + +  ++S ++  D+   SKG GF   E++      I+  NG  L   K+
Sbjct:   156 IDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLL-SDKK 214

Query:   209 PLLVKFADSGLKKRGAGAGG 228
               + KF     + +  G  G
Sbjct:   215 VYVGKFQPRAQRMKELGESG 234

 Score = 146 (56.5 bits), Expect = 3.0e-07, P = 3.0e-07
 Identities = 42/162 (25%), Positives = 76/162 (46%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I+ L +   +K + +  S +G I+S K   D   N  +GYGFV FE+   A  A++ 
Sbjct:   146 NIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNS-KGYGFVHFETEHSAQTAIEK 204

Query:   120 -----LQDKGIH-------AQMARQQEQDP---TNLYIANLPLNFKECDLESLLAKYVTV 164
                  L DK ++       AQ  ++  +     TN+++ N   +  +  L ++ +K+  +
Sbjct:   205 VNGMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEI 264

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGS 206
              S  ++ D     KG GF     +D   Q ++  N S L G+
Sbjct:   265 TSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILEGT 306

 Score = 100 (40.3 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
 Identities = 25/85 (29%), Positives = 40/85 (47%)

Query:   131 RQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDK 190
             R Q     NLY+ N+  +  +  L    + + T+ S +++ D N  SKG GF   E  ++
Sbjct:   336 RVQRYQGVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEE 395

Query:   191 CDQMIQLFNGSTLPGSKEPLLVKFA 215
                 +   N S + G+K PL V  A
Sbjct:   396 ATAAVTDMN-SKMIGAK-PLYVALA 418

 Score = 83 (34.3 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
 Identities = 22/71 (30%), Positives = 34/71 (47%)

Query:    52 GPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGG 111
             G   L  TN++++   +    + L  M S++G I S   + D    K +G+GFV F    
Sbjct:   231 GESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTD-AQGKPKGFGFVAFADQD 289

Query:   112 YALAAVKALQD 122
              A  AV+ L D
Sbjct:   290 AAGQAVEKLND 300


>UNIPROTKB|E7EQV3 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
            ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
            ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
        Length = 591

 Score = 161 (61.7 bits), Expect = 4.4e-09, P = 4.4e-09
 Identities = 45/163 (27%), Positives = 80/163 (49%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I+ L +   +K L +  S +G I+S K + D+  N  +GYGFV FE+   A  A++ 
Sbjct:    55 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEK 112

Query:   120 -----LQDKGIH-----AQMARQQE-----QDPTNLYIANLPLNFKECDLESLLAKYVTV 164
                  L D+ +      ++  R+ E     ++ TN+YI N   +  +  L+ L  K+   
Sbjct:   113 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 172

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSK 207
             +S +++ D +  SKG GF   E  +   + +   NG  L G +
Sbjct:   173 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 215

 Score = 114 (45.2 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
 Identities = 29/87 (33%), Positives = 48/87 (55%)

Query:    59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAV- 117
             TN+YI+   +D  D+ L ++  ++GP +S K + D++  K +G+GFV FE    A  AV 
Sbjct:   146 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVD 204

Query:   118 ----KALQDKGIHAQMARQQEQDPTNL 140
                 K L  K I+   A+++ +  T L
Sbjct:   205 EMNGKELNGKQIYVGRAQKKVERQTEL 231

 Score = 77 (32.2 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
 Identities = 27/102 (26%), Positives = 44/102 (43%)

Query:   139 NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLF 198
             NLY+ NL     +  L    + + T+ S +++ +    SKG GF    S ++  + +   
Sbjct:   250 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGR-SKGFGFVCFSSPEEATKAVTEM 308

Query:   199 NGSTLPGSKEPLLVKFADSGLKKRGAGAGGPNIYRGPGAEVR 240
             NG  +  + +PL V  A    +K    A   N Y    A VR
Sbjct:   309 NGRIV--ATKPLYVALAQ---RKEERQAHLTNQYMQRMASVR 345


>UNIPROTKB|E2RQC8 [details] [associations]
            symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
            ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
            NextBio:20898275 Uniprot:E2RQC8
        Length = 596

 Score = 161 (61.7 bits), Expect = 4.4e-09, P = 4.4e-09
 Identities = 45/163 (27%), Positives = 80/163 (49%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I+ L +   +K L +  S +G I+S K + D+  N  +GYGFV FE+   A  A++ 
Sbjct:   100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEK 157

Query:   120 -----LQDKGIH-----AQMARQQE-----QDPTNLYIANLPLNFKECDLESLLAKYVTV 164
                  L D+ +      ++  R+ E     ++ TN+YI N   +  +  L+ L  K+   
Sbjct:   158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 217

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSK 207
             +S +++ D +  SKG GF   E  +   + +   NG  L G +
Sbjct:   218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260

 Score = 159 (61.0 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 53/215 (24%), Positives = 95/215 (44%)

Query:    46 SPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFV 105
             +P  P+ P      +LY+  L  D T+  L    S  GPI+S +   D  T +  GY +V
Sbjct:     2 NPSAPSYP----MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYV 57

Query:   106 DFESGGYALAAVKALQDKGIHAQMAR--QQEQDPT-------NLYIANLPLNFKECDLES 156
             +F+    A  A+  +    I  +  R    ++DP+       N++I NL  +     L  
Sbjct:    58 NFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117

Query:   157 LLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFAD 216
               + +  ++S +++ D N  SKG GF   E+++  ++ I+  NG  L   ++  + +F  
Sbjct:   118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLL-NDRKVFVGRFKS 175

Query:   217 SGLKKRGAGAGGPNIYRGPGAEVRLWGRDSADSQL 251
                K+R A  G           ++ +G D  D +L
Sbjct:   176 R--KEREAELGA-RAKEFTNVYIKNFGEDMDDERL 207

 Score = 114 (45.2 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
 Identities = 29/87 (33%), Positives = 48/87 (55%)

Query:    59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAV- 117
             TN+YI+   +D  D+ L ++  ++GP +S K + D++  K +G+GFV FE    A  AV 
Sbjct:   191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVD 249

Query:   118 ----KALQDKGIHAQMARQQEQDPTNL 140
                 K L  K I+   A+++ +  T L
Sbjct:   250 EMNGKELNGKQIYVGRAQKKVERQTEL 276

 Score = 57 (25.1 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query:   139 NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGF 182
             NLY+ NL     +  L    + + T+ S +++ +    SKG GF
Sbjct:   295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGR-SKGFGF 337


>UNIPROTKB|P61286 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9913 "Bos taurus" [GO:0005515 "protein binding"
            evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
            evidence=ISS] [GO:2000623 "negative regulation of
            nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
            evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
            [GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
            "RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
            GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
            UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
            Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
            GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
            BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
        Length = 636

 Score = 161 (61.7 bits), Expect = 4.9e-09, P = 4.9e-09
 Identities = 45/163 (27%), Positives = 80/163 (49%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I+ L +   +K L +  S +G I+S K + D+  N  +GYGFV FE+   A  A++ 
Sbjct:   100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEK 157

Query:   120 -----LQDKGIH-----AQMARQQE-----QDPTNLYIANLPLNFKECDLESLLAKYVTV 164
                  L D+ +      ++  R+ E     ++ TN+YI N   +  +  L+ L  K+   
Sbjct:   158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 217

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSK 207
             +S +++ D +  SKG GF   E  +   + +   NG  L G +
Sbjct:   218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260

 Score = 159 (61.0 bits), Expect = 8.4e-09, P = 8.4e-09
 Identities = 53/215 (24%), Positives = 95/215 (44%)

Query:    46 SPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFV 105
             +P  P+ P      +LY+  L  D T+  L    S  GPI+S +   D  T +  GY +V
Sbjct:     2 NPSAPSYP----MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYV 57

Query:   106 DFESGGYALAAVKALQDKGIHAQMAR--QQEQDPT-------NLYIANLPLNFKECDLES 156
             +F+    A  A+  +    I  +  R    ++DP+       N++I NL  +     L  
Sbjct:    58 NFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117

Query:   157 LLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFAD 216
               + +  ++S +++ D N  SKG GF   E+++  ++ I+  NG  L   ++  + +F  
Sbjct:   118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLL-NDRKVFVGRFKS 175

Query:   217 SGLKKRGAGAGGPNIYRGPGAEVRLWGRDSADSQL 251
                K+R A  G           ++ +G D  D +L
Sbjct:   176 R--KEREAELGA-RAKEFTNVYIKNFGEDMDDERL 207

 Score = 114 (45.2 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
 Identities = 29/87 (33%), Positives = 48/87 (55%)

Query:    59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAV- 117
             TN+YI+   +D  D+ L ++  ++GP +S K + D++  K +G+GFV FE    A  AV 
Sbjct:   191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVD 249

Query:   118 ----KALQDKGIHAQMARQQEQDPTNL 140
                 K L  K I+   A+++ +  T L
Sbjct:   250 EMNGKELNGKQIYVGRAQKKVERQTEL 276

 Score = 77 (32.2 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
 Identities = 27/102 (26%), Positives = 44/102 (43%)

Query:   139 NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLF 198
             NLY+ NL     +  L    + + T+ S +++ +    SKG GF    S ++  + +   
Sbjct:   295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGR-SKGFGFVCFSSPEEATKAVTEM 353

Query:   199 NGSTLPGSKEPLLVKFADSGLKKRGAGAGGPNIYRGPGAEVR 240
             NG  +  + +PL V  A    +K    A   N Y    A VR
Sbjct:   354 NGRIV--ATKPLYVALAQ---RKEERQAHLTNQYMQRMASVR 390


>UNIPROTKB|J9P326 [details] [associations]
            symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
            OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
            ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
            KEGG:cfa:612751 Uniprot:J9P326
        Length = 636

 Score = 161 (61.7 bits), Expect = 4.9e-09, P = 4.9e-09
 Identities = 45/163 (27%), Positives = 80/163 (49%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I+ L +   +K L +  S +G I+S K + D+  N  +GYGFV FE+   A  A++ 
Sbjct:   100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEK 157

Query:   120 -----LQDKGIH-----AQMARQQE-----QDPTNLYIANLPLNFKECDLESLLAKYVTV 164
                  L D+ +      ++  R+ E     ++ TN+YI N   +  +  L+ L  K+   
Sbjct:   158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 217

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSK 207
             +S +++ D +  SKG GF   E  +   + +   NG  L G +
Sbjct:   218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260

 Score = 159 (61.0 bits), Expect = 8.4e-09, P = 8.4e-09
 Identities = 53/215 (24%), Positives = 95/215 (44%)

Query:    46 SPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFV 105
             +P  P+ P      +LY+  L  D T+  L    S  GPI+S +   D  T +  GY +V
Sbjct:     2 NPSAPSYP----MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYV 57

Query:   106 DFESGGYALAAVKALQDKGIHAQMAR--QQEQDPT-------NLYIANLPLNFKECDLES 156
             +F+    A  A+  +    I  +  R    ++DP+       N++I NL  +     L  
Sbjct:    58 NFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117

Query:   157 LLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFAD 216
               + +  ++S +++ D N  SKG GF   E+++  ++ I+  NG  L   ++  + +F  
Sbjct:   118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLL-NDRKVFVGRFKS 175

Query:   217 SGLKKRGAGAGGPNIYRGPGAEVRLWGRDSADSQL 251
                K+R A  G           ++ +G D  D +L
Sbjct:   176 R--KEREAELGA-RAKEFTNVYIKNFGEDMDDERL 207

 Score = 114 (45.2 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
 Identities = 29/87 (33%), Positives = 48/87 (55%)

Query:    59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAV- 117
             TN+YI+   +D  D+ L ++  ++GP +S K + D++  K +G+GFV FE    A  AV 
Sbjct:   191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVD 249

Query:   118 ----KALQDKGIHAQMARQQEQDPTNL 140
                 K L  K I+   A+++ +  T L
Sbjct:   250 EMNGKELNGKQIYVGRAQKKVERQTEL 276

 Score = 77 (32.2 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
 Identities = 27/102 (26%), Positives = 44/102 (43%)

Query:   139 NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLF 198
             NLY+ NL     +  L    + + T+ S +++ +    SKG GF    S ++  + +   
Sbjct:   295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGR-SKGFGFVCFSSPEEATKAVTEM 353

Query:   199 NGSTLPGSKEPLLVKFADSGLKKRGAGAGGPNIYRGPGAEVR 240
             NG  +  + +PL V  A    +K    A   N Y    A VR
Sbjct:   354 NGRIV--ATKPLYVALAQ---RKEERQAHLTNQYMQRMASVR 390


>UNIPROTKB|P11940 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
            [GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
            "cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
            evidence=TAS] [GO:0008494 "translation activator activity"
            evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
            "catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
            "ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
            regulation of nuclear-transcribed mRNA catabolic process,
            nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
            stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0000184 "nuclear-transcribed mRNA catabolic process,
            nonsense-mediated decay" evidence=TAS] [GO:0000288
            "nuclear-transcribed mRNA catabolic process,
            deadenylation-dependent decay" evidence=TAS] [GO:0000289
            "nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
            [GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
            evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
            [GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
            metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
            process" evidence=TAS] [GO:0044267 "cellular protein metabolic
            process" evidence=TAS] [GO:0045727 "positive regulation of
            translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
            Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
            Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
            GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
            eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
            Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
            PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
            PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
            CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
            EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
            EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
            EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
            IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
            RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
            PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
            PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
            PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
            PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
            SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
            STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
            PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
            KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
            HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
            PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
            BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
            EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
            PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
            Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
        Length = 636

 Score = 161 (61.7 bits), Expect = 4.9e-09, P = 4.9e-09
 Identities = 45/163 (27%), Positives = 80/163 (49%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I+ L +   +K L +  S +G I+S K + D+  N  +GYGFV FE+   A  A++ 
Sbjct:   100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEK 157

Query:   120 -----LQDKGIH-----AQMARQQE-----QDPTNLYIANLPLNFKECDLESLLAKYVTV 164
                  L D+ +      ++  R+ E     ++ TN+YI N   +  +  L+ L  K+   
Sbjct:   158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 217

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSK 207
             +S +++ D +  SKG GF   E  +   + +   NG  L G +
Sbjct:   218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260

 Score = 159 (61.0 bits), Expect = 8.4e-09, P = 8.4e-09
 Identities = 53/215 (24%), Positives = 95/215 (44%)

Query:    46 SPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFV 105
             +P  P+ P      +LY+  L  D T+  L    S  GPI+S +   D  T +  GY +V
Sbjct:     2 NPSAPSYP----MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYV 57

Query:   106 DFESGGYALAAVKALQDKGIHAQMAR--QQEQDPT-------NLYIANLPLNFKECDLES 156
             +F+    A  A+  +    I  +  R    ++DP+       N++I NL  +     L  
Sbjct:    58 NFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117

Query:   157 LLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFAD 216
               + +  ++S +++ D N  SKG GF   E+++  ++ I+  NG  L   ++  + +F  
Sbjct:   118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLL-NDRKVFVGRFKS 175

Query:   217 SGLKKRGAGAGGPNIYRGPGAEVRLWGRDSADSQL 251
                K+R A  G           ++ +G D  D +L
Sbjct:   176 R--KEREAELGA-RAKEFTNVYIKNFGEDMDDERL 207

 Score = 114 (45.2 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
 Identities = 29/87 (33%), Positives = 48/87 (55%)

Query:    59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAV- 117
             TN+YI+   +D  D+ L ++  ++GP +S K + D++  K +G+GFV FE    A  AV 
Sbjct:   191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVD 249

Query:   118 ----KALQDKGIHAQMARQQEQDPTNL 140
                 K L  K I+   A+++ +  T L
Sbjct:   250 EMNGKELNGKQIYVGRAQKKVERQTEL 276

 Score = 77 (32.2 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
 Identities = 27/102 (26%), Positives = 44/102 (43%)

Query:   139 NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLF 198
             NLY+ NL     +  L    + + T+ S +++ +    SKG GF    S ++  + +   
Sbjct:   295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGR-SKGFGFVCFSSPEEATKAVTEM 353

Query:   199 NGSTLPGSKEPLLVKFADSGLKKRGAGAGGPNIYRGPGAEVR 240
             NG  +  + +PL V  A    +K    A   N Y    A VR
Sbjct:   354 NGRIV--ATKPLYVALAQ---RKEERQAHLTNQYMQRMASVR 390


>UNIPROTKB|F2Z557 [details] [associations]
            symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
            EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
            ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
            Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
            Uniprot:F2Z557
        Length = 636

 Score = 161 (61.7 bits), Expect = 4.9e-09, P = 4.9e-09
 Identities = 45/163 (27%), Positives = 80/163 (49%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I+ L +   +K L +  S +G I+S K + D+  N  +GYGFV FE+   A  A++ 
Sbjct:   100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEK 157

Query:   120 -----LQDKGIH-----AQMARQQE-----QDPTNLYIANLPLNFKECDLESLLAKYVTV 164
                  L D+ +      ++  R+ E     ++ TN+YI N   +  +  L+ L  K+   
Sbjct:   158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 217

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSK 207
             +S +++ D +  SKG GF   E  +   + +   NG  L G +
Sbjct:   218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260

 Score = 159 (61.0 bits), Expect = 8.4e-09, P = 8.4e-09
 Identities = 53/215 (24%), Positives = 95/215 (44%)

Query:    46 SPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFV 105
             +P  P+ P      +LY+  L  D T+  L    S  GPI+S +   D  T +  GY +V
Sbjct:     2 NPSAPSYP----MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYV 57

Query:   106 DFESGGYALAAVKALQDKGIHAQMAR--QQEQDPT-------NLYIANLPLNFKECDLES 156
             +F+    A  A+  +    I  +  R    ++DP+       N++I NL  +     L  
Sbjct:    58 NFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117

Query:   157 LLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFAD 216
               + +  ++S +++ D N  SKG GF   E+++  ++ I+  NG  L   ++  + +F  
Sbjct:   118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLL-NDRKVFVGRFKS 175

Query:   217 SGLKKRGAGAGGPNIYRGPGAEVRLWGRDSADSQL 251
                K+R A  G           ++ +G D  D +L
Sbjct:   176 R--KEREAELGA-RAKEFTNVYIKNFGEDMDDERL 207

 Score = 114 (45.2 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
 Identities = 29/87 (33%), Positives = 48/87 (55%)

Query:    59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAV- 117
             TN+YI+   +D  D+ L ++  ++GP +S K + D++  K +G+GFV FE    A  AV 
Sbjct:   191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVD 249

Query:   118 ----KALQDKGIHAQMARQQEQDPTNL 140
                 K L  K I+   A+++ +  T L
Sbjct:   250 EMNGKELNGKQIYVGRAQKKVERQTEL 276

 Score = 77 (32.2 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
 Identities = 27/102 (26%), Positives = 44/102 (43%)

Query:   139 NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLF 198
             NLY+ NL     +  L    + + T+ S +++ +    SKG GF    S ++  + +   
Sbjct:   295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGR-SKGFGFVCFSSPEEATKAVTEM 353

Query:   199 NGSTLPGSKEPLLVKFADSGLKKRGAGAGGPNIYRGPGAEVR 240
             NG  +  + +PL V  A    +K    A   N Y    A VR
Sbjct:   354 NGRIV--ATKPLYVALAQ---RKEERQAHLTNQYMQRMASVR 390


>UNIPROTKB|Q5R8F7 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
            granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
            evidence=ISS] [GO:2000623 "negative regulation of
            nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
            HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
            RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
            SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
            InParanoid:Q5R8F7 Uniprot:Q5R8F7
        Length = 636

 Score = 161 (61.7 bits), Expect = 4.9e-09, P = 4.9e-09
 Identities = 45/163 (27%), Positives = 80/163 (49%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I+ L +   +K L +  S +G I+S K + D+  N  +GYGFV FE+   A  A++ 
Sbjct:   100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEK 157

Query:   120 -----LQDKGIH-----AQMARQQE-----QDPTNLYIANLPLNFKECDLESLLAKYVTV 164
                  L D+ +      ++  R+ E     ++ TN+YI N   +  +  L+ L  K+   
Sbjct:   158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 217

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSK 207
             +S +++ D +  SKG GF   E  +   + +   NG  L G +
Sbjct:   218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260

 Score = 159 (61.0 bits), Expect = 8.4e-09, P = 8.4e-09
 Identities = 53/215 (24%), Positives = 95/215 (44%)

Query:    46 SPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFV 105
             +P  P+ P      +LY+  L  D T+  L    S  GPI+S +   D  T +  GY +V
Sbjct:     2 NPSAPSYP----MASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYV 57

Query:   106 DFESGGYALAAVKALQDKGIHAQMAR--QQEQDPT-------NLYIANLPLNFKECDLES 156
             +F+    A  A+  +    I  +  R    ++DP+       N++I NL  +     L  
Sbjct:    58 NFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117

Query:   157 LLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFAD 216
               + +  ++S +++ D N  SKG GF   E+++  ++ I+  NG  L   ++  + +F  
Sbjct:   118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLL-NDRKVFVGRFKS 175

Query:   217 SGLKKRGAGAGGPNIYRGPGAEVRLWGRDSADSQL 251
                K+R A  G           ++ +G D  D +L
Sbjct:   176 R--KEREAELGA-RAKEFTNVYIKNFGEDMDDERL 207

 Score = 114 (45.2 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
 Identities = 29/87 (33%), Positives = 48/87 (55%)

Query:    59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAV- 117
             TN+YI+   +D  D+ L ++  ++GP +S K + D++  K +G+GFV FE    A  AV 
Sbjct:   191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVD 249

Query:   118 ----KALQDKGIHAQMARQQEQDPTNL 140
                 K L  K I+   A+++ +  T L
Sbjct:   250 EMNGKELNGKQIYVGRAQKKVERQTEL 276

 Score = 77 (32.2 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
 Identities = 27/102 (26%), Positives = 44/102 (43%)

Query:   139 NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLF 198
             NLY+ NL     +  L    + + T+ S +++ +    SKG GF    S ++  + +   
Sbjct:   295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGR-SKGFGFVCFSSPEEATKAVTEM 353

Query:   199 NGSTLPGSKEPLLVKFADSGLKKRGAGAGGPNIYRGPGAEVR 240
             NG  +  + +PL V  A    +K    A   N Y    A VR
Sbjct:   354 NGRIV--ATKPLYVALAQ---RKEERQAHLTNQYMQRMASVR 390


>MGI|MGI:1349722 [details] [associations]
            symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008022 "protein C-terminus binding"
            evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
            stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
            complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=ISO] [GO:2000623 "negative regulation of
            nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
            eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
            KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
            GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
            GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
            EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
            EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
            EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
            PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
            ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
            STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
            PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
            KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
            CleanEx:MM_PABPC1 Genevestigator:P29341
            GermOnline:ENSMUSG00000022283 Uniprot:P29341
        Length = 636

 Score = 161 (61.7 bits), Expect = 4.9e-09, P = 4.9e-09
 Identities = 45/163 (27%), Positives = 80/163 (49%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I+ L +   +K L +  S +G I+S K + D+  N  +GYGFV FE+   A  A++ 
Sbjct:   100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEK 157

Query:   120 -----LQDKGIH-----AQMARQQE-----QDPTNLYIANLPLNFKECDLESLLAKYVTV 164
                  L D+ +      ++  R+ E     ++ TN+YI N   +  +  L+ L  K+   
Sbjct:   158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPA 217

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSK 207
             +S +++ D +  SKG GF   E  +   + +   NG  L G +
Sbjct:   218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260

 Score = 159 (61.0 bits), Expect = 8.4e-09, P = 8.4e-09
 Identities = 53/215 (24%), Positives = 95/215 (44%)

Query:    46 SPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFV 105
             +P  P+ P      +LY+  L  D T+  L    S  GPI+S +   D  T +  GY +V
Sbjct:     2 NPSAPSYP----MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYV 57

Query:   106 DFESGGYALAAVKALQDKGIHAQMAR--QQEQDPT-------NLYIANLPLNFKECDLES 156
             +F+    A  A+  +    I  +  R    ++DP+       N++I NL  +     L  
Sbjct:    58 NFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117

Query:   157 LLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFAD 216
               + +  ++S +++ D N  SKG GF   E+++  ++ I+  NG  L   ++  + +F  
Sbjct:   118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLL-NDRKVFVGRFKS 175

Query:   217 SGLKKRGAGAGGPNIYRGPGAEVRLWGRDSADSQL 251
                K+R A  G           ++ +G D  D +L
Sbjct:   176 R--KEREAELGA-RAKEFTNVYIKNFGEDMDDERL 207

 Score = 113 (44.8 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
 Identities = 29/87 (33%), Positives = 47/87 (54%)

Query:    59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAV- 117
             TN+YI+   +D  D+ L  +  ++GP +S K + D++  K +G+GFV FE    A  AV 
Sbjct:   191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVD 249

Query:   118 ----KALQDKGIHAQMARQQEQDPTNL 140
                 K L  K I+   A+++ +  T L
Sbjct:   250 EMNGKELNGKQIYVGRAQKKVERQTEL 276

 Score = 77 (32.2 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
 Identities = 27/102 (26%), Positives = 44/102 (43%)

Query:   139 NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLF 198
             NLY+ NL     +  L    + + T+ S +++ +    SKG GF    S ++  + +   
Sbjct:   295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGR-SKGFGFVCFSSPEEATKAVTEM 353

Query:   199 NGSTLPGSKEPLLVKFADSGLKKRGAGAGGPNIYRGPGAEVR 240
             NG  +  + +PL V  A    +K    A   N Y    A VR
Sbjct:   354 NGRIV--ATKPLYVALAQ---RKEERQAHLTNQYMQRMASVR 390


>RGD|619838 [details] [associations]
            symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
            binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008022 "protein C-terminus binding"
            evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
            stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
            complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
            nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
            GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
            GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
            GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
            RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
            ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
            MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
            Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
            UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
            Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
        Length = 636

 Score = 161 (61.7 bits), Expect = 4.9e-09, P = 4.9e-09
 Identities = 45/163 (27%), Positives = 80/163 (49%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I+ L +   +K L +  S +G I+S K + D+  N  +GYGFV FE+   A  A++ 
Sbjct:   100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEK 157

Query:   120 -----LQDKGIH-----AQMARQQE-----QDPTNLYIANLPLNFKECDLESLLAKYVTV 164
                  L D+ +      ++  R+ E     ++ TN+YI N   +  +  L+ L  K+   
Sbjct:   158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPA 217

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSK 207
             +S +++ D +  SKG GF   E  +   + +   NG  L G +
Sbjct:   218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260

 Score = 159 (61.0 bits), Expect = 8.4e-09, P = 8.4e-09
 Identities = 53/215 (24%), Positives = 95/215 (44%)

Query:    46 SPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFV 105
             +P  P+ P      +LY+  L  D T+  L    S  GPI+S +   D  T +  GY +V
Sbjct:     2 NPSAPSYP----MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYV 57

Query:   106 DFESGGYALAAVKALQDKGIHAQMAR--QQEQDPT-------NLYIANLPLNFKECDLES 156
             +F+    A  A+  +    I  +  R    ++DP+       N++I NL  +     L  
Sbjct:    58 NFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117

Query:   157 LLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFAD 216
               + +  ++S +++ D N  SKG GF   E+++  ++ I+  NG  L   ++  + +F  
Sbjct:   118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLL-NDRKVFVGRFKS 175

Query:   217 SGLKKRGAGAGGPNIYRGPGAEVRLWGRDSADSQL 251
                K+R A  G           ++ +G D  D +L
Sbjct:   176 R--KEREAELGA-RAKEFTNVYIKNFGEDMDDERL 207

 Score = 113 (44.8 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
 Identities = 29/87 (33%), Positives = 47/87 (54%)

Query:    59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAV- 117
             TN+YI+   +D  D+ L  +  ++GP +S K + D++  K +G+GFV FE    A  AV 
Sbjct:   191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVD 249

Query:   118 ----KALQDKGIHAQMARQQEQDPTNL 140
                 K L  K I+   A+++ +  T L
Sbjct:   250 EMNGKELNGKQIYVGRAQKKVERQTEL 276

 Score = 77 (32.2 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
 Identities = 27/102 (26%), Positives = 44/102 (43%)

Query:   139 NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLF 198
             NLY+ NL     +  L    + + T+ S +++ +    SKG GF    S ++  + +   
Sbjct:   295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGR-SKGFGFVCFSSPEEATKAVTEM 353

Query:   199 NGSTLPGSKEPLLVKFADSGLKKRGAGAGGPNIYRGPGAEVR 240
             NG  +  + +PL V  A    +K    A   N Y    A VR
Sbjct:   354 NGRIV--ATKPLYVALAQ---RKEERQAHLTNQYMQRMASVR 390


>UNIPROTKB|I3LS00 [details] [associations]
            symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
            mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
            [GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
            "poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
            GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
            GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
            Uniprot:I3LS00
        Length = 647

 Score = 161 (61.7 bits), Expect = 5.0e-09, P = 5.0e-09
 Identities = 45/163 (27%), Positives = 80/163 (49%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I+ L +   +K L +  S +G I+S K + D+  N  +GYGFV FE+   A  A++ 
Sbjct:   100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEK 157

Query:   120 -----LQDKGIH-----AQMARQQE-----QDPTNLYIANLPLNFKECDLESLLAKYVTV 164
                  L D+ +      ++  R+ E     ++ TN+YI N   +  +  L+ L  K+   
Sbjct:   158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 217

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSK 207
             +S +++ D +  SKG GF   E  +   + +   NG  L G +
Sbjct:   218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260

 Score = 159 (61.0 bits), Expect = 8.6e-09, P = 8.6e-09
 Identities = 53/215 (24%), Positives = 95/215 (44%)

Query:    46 SPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFV 105
             +P  P+ P      +LY+  L  D T+  L    S  GPI+S +   D  T +  GY +V
Sbjct:     2 NPSAPSYP----MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYV 57

Query:   106 DFESGGYALAAVKALQDKGIHAQMAR--QQEQDPT-------NLYIANLPLNFKECDLES 156
             +F+    A  A+  +    I  +  R    ++DP+       N++I NL  +     L  
Sbjct:    58 NFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117

Query:   157 LLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFAD 216
               + +  ++S +++ D N  SKG GF   E+++  ++ I+  NG  L   ++  + +F  
Sbjct:   118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLL-NDRKVFVGRFKS 175

Query:   217 SGLKKRGAGAGGPNIYRGPGAEVRLWGRDSADSQL 251
                K+R A  G           ++ +G D  D +L
Sbjct:   176 R--KEREAELGA-RAKEFTNVYIKNFGEDMDDERL 207

 Score = 114 (45.2 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
 Identities = 29/87 (33%), Positives = 48/87 (55%)

Query:    59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAV- 117
             TN+YI+   +D  D+ L ++  ++GP +S K + D++  K +G+GFV FE    A  AV 
Sbjct:   191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVD 249

Query:   118 ----KALQDKGIHAQMARQQEQDPTNL 140
                 K L  K I+   A+++ +  T L
Sbjct:   250 EMNGKELNGKQIYVGRAQKKVERQTEL 276

 Score = 77 (32.2 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
 Identities = 27/102 (26%), Positives = 44/102 (43%)

Query:   139 NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLF 198
             NLY+ NL     +  L    + + T+ S +++ +    SKG GF    S ++  + +   
Sbjct:   295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGR-SKGFGFVCFSSPEEATKAVTEM 353

Query:   199 NGSTLPGSKEPLLVKFADSGLKKRGAGAGGPNIYRGPGAEVR 240
             NG  +  + +PL V  A    +K    A   N Y    A VR
Sbjct:   354 NGRIV--ATKPLYVALAQ---RKEERQAHLTNQYMQRMASVR 390


>UNIPROTKB|H0Y5F5 [details] [associations]
            symbol:PABPC4 "Polyadenylate-binding protein 4"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
            Ensembl:ENST00000421687 Uniprot:H0Y5F5
        Length = 550

 Score = 160 (61.4 bits), Expect = 5.1e-09, P = 5.1e-09
 Identities = 44/161 (27%), Positives = 81/161 (50%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I+ L +   +K L +  S +G I+S K + D+  N  +GY FV FE+   A  A++ 
Sbjct:     2 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEK 59

Query:   120 -----LQDKGIH-----AQMARQQE-----QDPTNLYIANLPLNFKECDLESLLAKYVTV 164
                  L D+ +      ++  R+ E     ++ TN+YI N      +  L+ L +++   
Sbjct:    60 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKT 119

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPG 205
             +S +++RD N  SKG GF   E  +  ++ ++  NG  + G
Sbjct:   120 LSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISG 160

 Score = 105 (42.0 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
 Identities = 23/71 (32%), Positives = 39/71 (54%)

Query:    59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVK 118
             TN+YI+   ++  D+ L  + SQ+G  +S K + D    K +G+GFV +E    A  AV+
Sbjct:    93 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVE 151

Query:   119 ALQDKGIHAQM 129
              +  K I  ++
Sbjct:   152 EMNGKEISGKI 162

 Score = 81 (33.6 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
 Identities = 23/77 (29%), Positives = 38/77 (49%)

Query:   139 NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLF 198
             NLYI NL     +  L    + + ++ S +++ ++   SKG GF    S ++  + +   
Sbjct:   197 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEM 255

Query:   199 NGSTLPGSKEPLLVKFA 215
             NG  + GSK PL V  A
Sbjct:   256 NGRIV-GSK-PLYVALA 270


>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
            symbol:tia1l "cytotoxic granule-associated RNA
            binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
            OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
            EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
            SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
            CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
        Length = 342

 Score = 150 (57.9 bits), Expect = 5.9e-09, Sum P(2) = 5.9e-09
 Identities = 46/157 (29%), Positives = 74/157 (47%)

Query:    61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKAL 120
             LY+  L++D T+  ++ + SQ GP  S K ILD T N    Y FV+F    +A AA+ A+
Sbjct:    11 LYVGNLSRDVTEALILQVFSQIGPCKSCKMILDTTGND--PYCFVEFYENRHAAAALAAM 68

Query:   121 QDKGI--------HAQMARQQEQDPTN---LYIANLPLNFKECDLESLLAKYVTVVSTRI 169
               + I         A     Q++D +N   +++ +L       D+ +  A +  +   R+
Sbjct:    69 NGRKILGKDMKVNWASTPSSQKKDTSNHFHVFVGDLSPEISTDDVRAAFAPFGKISDARV 128

Query:   170 LRD-NNNTSKGVGFARLESKDKCDQMIQLFNGSTLPG 205
             ++D     SKG GF    +K   +  IQ  NG  L G
Sbjct:   129 VKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGG 165

 Score = 42 (19.8 bits), Expect = 5.9e-09, Sum P(2) = 5.9e-09
 Identities = 16/55 (29%), Positives = 24/55 (43%)

Query:   242 WGRDSADSQLAYEHPMT----PIPATIQYQRFTAGPGGTGHIPAGYTP--W-VPT 289
             WG+++AD +   + PM     P  A   Y ++    G  G     Y P  W +PT
Sbjct:   275 WGKETADMRSMQQMPMPQQNKPTYAAQPYGQWGQSYGN-GQQMGQYVPNGWQMPT 328


>UNIPROTKB|B1ANR0 [details] [associations]
            symbol:PABPC4 "Polyadenylate-binding protein 4"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
            EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
            HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
            UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
            SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
        Length = 615

 Score = 160 (61.4 bits), Expect = 6.2e-09, P = 6.2e-09
 Identities = 44/161 (27%), Positives = 81/161 (50%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I+ L +   +K L +  S +G I+S K + D+  N  +GY FV FE+   A  A++ 
Sbjct:   100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEK 157

Query:   120 -----LQDKGIH-----AQMARQQE-----QDPTNLYIANLPLNFKECDLESLLAKYVTV 164
                  L D+ +      ++  R+ E     ++ TN+YI N      +  L+ L +++   
Sbjct:   158 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKT 217

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPG 205
             +S +++RD N  SKG GF   E  +  ++ ++  NG  + G
Sbjct:   218 LSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISG 258

 Score = 148 (57.2 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 48/193 (24%), Positives = 87/193 (45%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             +LY+  L  D T+  L    S  GP++S +   D  T +  GY +V+F+    A  A+  
Sbjct:    12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71

Query:   120 LQDKGIHAQMAR--QQEQDPT-------NLYIANLPLNFKECDLESLLAKYVTVVSTRIL 170
             +    I  +  R    ++DP+       N++I NL  +     L    + +  ++S +++
Sbjct:    72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131

Query:   171 RDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRGAGAGGP- 229
              D N  SKG  F   E+++  D+ I+  NG  L   ++  + +F     ++   GA    
Sbjct:   132 CDENG-SKGYAFVHFETQEAADKAIEKMNGMLL-NDRKVFVGRFKSRKEREAELGAKAKE 189

Query:   230 --NIY-RGPGAEV 239
               N+Y +  G EV
Sbjct:   190 FTNVYIKNFGEEV 202

 Score = 105 (42.0 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
 Identities = 23/71 (32%), Positives = 39/71 (54%)

Query:    59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVK 118
             TN+YI+   ++  D+ L  + SQ+G  +S K + D    K +G+GFV +E    A  AV+
Sbjct:   191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVE 249

Query:   119 ALQDKGIHAQM 129
              +  K I  ++
Sbjct:   250 EMNGKEISGKI 260

 Score = 81 (33.6 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
 Identities = 23/77 (29%), Positives = 38/77 (49%)

Query:   139 NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLF 198
             NLYI NL     +  L    + + ++ S +++ ++   SKG GF    S ++  + +   
Sbjct:   295 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEM 353

Query:   199 NGSTLPGSKEPLLVKFA 215
             NG  + GSK PL V  A
Sbjct:   354 NGRIV-GSK-PLYVALA 368


>UNIPROTKB|A4QUF0 [details] [associations]
            symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
            nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
            "cellular_component" evidence=ND] [GO:0043581 "mycelium
            development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
            EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
            SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
            KEGG:mgr:MGG_09505 Uniprot:A4QUF0
        Length = 762

 Score = 157 (60.3 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
 Identities = 44/180 (24%), Positives = 75/180 (41%)

Query:    37 TTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTT 96
             T   +   G   +   P   +  +LY+  L    T+  L  + SQ G + S +   D  T
Sbjct:    39 TGEEIDTAGPTPSSAAPHPQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVT 98

Query:    97 NKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR--QQEQDPT-------NLYIANLPL 147
              +  GY +V++ +      A++ L    I  +  R    ++DP        N++I NL +
Sbjct:    99 RRSLGYAYVNYNTTADGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDV 158

Query:   148 NFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSK 207
                   L    A +  ++S ++ +D N  SKG GF   E+ +   Q I+  NG  L   K
Sbjct:   159 AIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKK 218

 Score = 140 (54.3 bits), Expect = 6.8e-07, Sum P(2) = 6.8e-07
 Identities = 44/162 (27%), Positives = 74/162 (45%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVK- 118
             N++I+ L     +K L +  + +G I+S K   D+  N  +GYGFV +E+   A  A+K 
Sbjct:   150 NVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNS-KGYGFVHYETDEAASQAIKH 208

Query:   119 ----ALQDKGIHA-----QMARQQEQDP-----TNLYIANLPLNFKECDLESLLAKYVTV 164
                  L +K ++      +  RQ + D      TN+Y+ N+     + +  +L  KY  V
Sbjct:   209 VNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDV 268

Query:   165 VSTRILRDNNN-TSKGVGFARLESKDKCDQMIQLFNGSTLPG 205
              S+ + RD     S+G GF    S +   + +Q  N     G
Sbjct:   269 TSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHG 310

 Score = 132 (51.5 bits), Expect = 3.8e-08, Sum P(3) = 3.8e-08
 Identities = 25/70 (35%), Positives = 40/70 (57%)

Query:    59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVK 118
             TN+Y++ +  + TD +   +  +YG + S+    D+ T K RG+GFV+F S   A  AV+
Sbjct:   242 TNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQ 301

Query:   119 ALQDKGIHAQ 128
              L +K  H Q
Sbjct:   302 ELNEKEFHGQ 311

 Score = 58 (25.5 bits), Expect = 3.8e-08, Sum P(3) = 3.8e-08
 Identities = 14/49 (28%), Positives = 26/49 (53%)

Query:   128 QMARQQEQDP---TNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN 173
             + ARQ++       NLYI NL     +  L  L +++  + S +++RD+
Sbjct:   333 EAARQEKASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRDS 381

 Score = 45 (20.9 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
 Identities = 23/90 (25%), Positives = 35/90 (38%)

Query:   219 LKKRGAGAGGPN------IYRGPGAEVRLWGRDSADSQLAYEH---PMTP-IPATIQYQR 268
             +++  A AG P       ++ GPG++       +    + Y     PM P  P       
Sbjct:   490 MQQAAAAAGMPQQYMQAPVFYGPGSQPGFMP-PAGGRGMPYPQGGMPMQPGRPGQFP-AG 547

Query:   269 FTAGPGGTGHIPAGYTPW--VPTQYVMPAP 296
             F A  GG G +P G  P   +P Q+    P
Sbjct:   548 FAAQQGGRGAMPQGIPPMYGLPGQFPPQGP 577

 Score = 37 (18.1 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
 Identities = 13/33 (39%), Positives = 15/33 (45%)

Query:   215 ADSGLKKRGAGAGGPNIYRGPGAEVRLWGRDSA 247
             A  G     A AG P   RG GA   L G+ +A
Sbjct:   640 AGRGAAAGRAPAGAPAGARGAGAPEGLQGQLAA 672


>UNIPROTKB|Q13310 [details] [associations]
            symbol:PABPC4 "Polyadenylate-binding protein 4"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
            [GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
            "cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
            binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
            evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
            [GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
            coagulation" evidence=TAS] [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
            GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
            GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
            GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
            EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
            IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
            RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
            UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
            IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
            DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
            Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
            KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
            GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
            neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
            PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
            NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
            Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
        Length = 644

 Score = 160 (61.4 bits), Expect = 6.6e-09, P = 6.6e-09
 Identities = 44/161 (27%), Positives = 81/161 (50%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I+ L +   +K L +  S +G I+S K + D+  N  +GY FV FE+   A  A++ 
Sbjct:   100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEK 157

Query:   120 -----LQDKGIH-----AQMARQQE-----QDPTNLYIANLPLNFKECDLESLLAKYVTV 164
                  L D+ +      ++  R+ E     ++ TN+YI N      +  L+ L +++   
Sbjct:   158 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKT 217

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPG 205
             +S +++RD N  SKG GF   E  +  ++ ++  NG  + G
Sbjct:   218 LSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISG 258

 Score = 148 (57.2 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 48/193 (24%), Positives = 87/193 (45%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             +LY+  L  D T+  L    S  GP++S +   D  T +  GY +V+F+    A  A+  
Sbjct:    12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71

Query:   120 LQDKGIHAQMAR--QQEQDPT-------NLYIANLPLNFKECDLESLLAKYVTVVSTRIL 170
             +    I  +  R    ++DP+       N++I NL  +     L    + +  ++S +++
Sbjct:    72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131

Query:   171 RDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRGAGAGGP- 229
              D N  SKG  F   E+++  D+ I+  NG  L   ++  + +F     ++   GA    
Sbjct:   132 CDENG-SKGYAFVHFETQEAADKAIEKMNGMLL-NDRKVFVGRFKSRKEREAELGAKAKE 189

Query:   230 --NIY-RGPGAEV 239
               N+Y +  G EV
Sbjct:   190 FTNVYIKNFGEEV 202

 Score = 105 (42.0 bits), Expect = 9.4e-07, Sum P(2) = 9.4e-07
 Identities = 23/71 (32%), Positives = 39/71 (54%)

Query:    59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVK 118
             TN+YI+   ++  D+ L  + SQ+G  +S K + D    K +G+GFV +E    A  AV+
Sbjct:   191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVE 249

Query:   119 ALQDKGIHAQM 129
              +  K I  ++
Sbjct:   250 EMNGKEISGKI 260

 Score = 81 (33.6 bits), Expect = 9.4e-07, Sum P(2) = 9.4e-07
 Identities = 23/77 (29%), Positives = 38/77 (49%)

Query:   139 NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLF 198
             NLYI NL     +  L    + + ++ S +++ ++   SKG GF    S ++  + +   
Sbjct:   295 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEM 353

Query:   199 NGSTLPGSKEPLLVKFA 215
             NG  + GSK PL V  A
Sbjct:   354 NGRIV-GSK-PLYVALA 368


>UNIPROTKB|Q8N6W0 [details] [associations]
            symbol:CELF5 "CUGBP Elav-like family member 5" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471139 HOVERGEN:HBG107646
            KO:K13207 eggNOG:NOG251494 OrthoDB:EOG4RJG30 EMBL:AB209067
            EMBL:AC005331 EMBL:AC006505 EMBL:AC010649 EMBL:AC123911
            EMBL:BC028101 EMBL:AF329266 EMBL:AF248649 IPI:IPI00171157
            IPI:IPI00853054 RefSeq:NP_001166144.1 RefSeq:NP_068757.2
            UniGene:Hs.655747 PDB:2DNH PDBsum:2DNH ProteinModelPortal:Q8N6W0
            SMR:Q8N6W0 STRING:Q8N6W0 PhosphoSite:Q8N6W0 DMDM:74762534
            PRIDE:Q8N6W0 DNASU:60680 Ensembl:ENST00000292672
            Ensembl:ENST00000541430 GeneID:60680 KEGG:hsa:60680 UCSC:uc002lxl.2
            UCSC:uc010dtj.2 CTD:60680 GeneCards:GC19P003224 HGNC:HGNC:14058
            HPA:HPA042012 MIM:612680 neXtProt:NX_Q8N6W0 PharmGKB:PA25429
            InParanoid:Q8N6W0 OMA:DGMKDLD PhylomeDB:Q8N6W0
            EvolutionaryTrace:Q8N6W0 GenomeRNAi:60680 NextBio:65500
            ArrayExpress:Q8N6W0 Bgee:Q8N6W0 CleanEx:HS_BRUNOL5
            Genevestigator:Q8N6W0 Uniprot:Q8N6W0
        Length = 485

 Score = 158 (60.7 bits), Expect = 7.0e-09, P = 7.0e-09
 Identities = 51/199 (25%), Positives = 89/199 (44%)

Query:    35 PITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDK 94
             P+ ++  +  G  G P G + L    L++  + +   +KDL  +  Q+G I     + D 
Sbjct:    23 PVGSSGPEPPG--GQPDGMKDLDAIKLFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDP 80

Query:    95 TTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTN----------LYIAN 144
              T   +G  F+ + +   A+ A  AL ++     MAR  +  P +          L++  
Sbjct:    81 YTGMHKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESRGGRDRKLFVGM 140

Query:   145 LPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGS-TL 203
             L     E D+  L   +  +    +LR  + +SKG  F +  S  +    I   +GS T+
Sbjct:   141 LNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTM 200

Query:   204 PGSKEPLLVKFADSGLKKR 222
             PG+   L+VKFAD+  K+R
Sbjct:   201 PGASSSLVVKFADTD-KER 218

 Score = 123 (48.4 bits), Expect = 7.4e-05, P = 7.4e-05
 Identities = 31/84 (36%), Positives = 47/84 (55%)

Query:    52 GPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGG 111
             GPE     NL+I  L Q+  D +L  M   +G IIS+K  +D+ TN+ + +GFV F++  
Sbjct:   396 GPEGC---NLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPA 452

Query:   112 YALAAVKALQDKGIHAQMARQQEQ 135
              A AA++A+   G    M R + Q
Sbjct:   453 SAQAAIQAMN--GFQIGMKRLKVQ 474


>UNIPROTKB|Q91579 [details] [associations]
            symbol:tnrc4-a "CUGBP Elav-like family member 3-A"
            species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
            mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:U16800 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BC057704 EMBL:BC072134
            RefSeq:NP_001079936.1 UniGene:Xl.986 HSSP:Q92879
            ProteinModelPortal:Q91579 SMR:Q91579 GeneID:379627 KEGG:xla:379627
            CTD:379627 Xenbase:XB-GENE-6255196 HOVERGEN:HBG107646 KO:K13207
            GO:GO:0048026 Uniprot:Q91579
        Length = 462

 Score = 155 (59.6 bits), Expect = 9.8e-09, Sum P(2) = 9.8e-09
 Identities = 48/173 (27%), Positives = 81/173 (46%)

Query:    61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKAL 120
             L+I  + ++  +KDL  +  Q+G I     I DK T   +G  F+ + +   AL A  AL
Sbjct:     9 LFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSAL 68

Query:   121 QDKGIHAQMARQQEQDPTN---------LYIANLPLNFKECDLESLLAKYVTVVSTRILR 171
              ++     M R  +  P +         L++  L     + D+  +   +  +    +LR
Sbjct:    69 HEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRRMFEPFGNIDECTVLR 128

Query:   172 DNNNTSKGVGFARLESKDKCDQMIQLFNGS-TLPGSKEPLLVKFADSGLKKRG 223
               + TSKG  F + ++  +    I   +GS TLPG+   L+VKFAD+  K+RG
Sbjct:   129 GPDGTSKGCAFVKFQTHTEAQAAINALHGSRTLPGASSSLVVKFADTE-KERG 180

 Score = 134 (52.2 bits), Expect = 3.8e-06, P = 3.8e-06
 Identities = 32/95 (33%), Positives = 54/95 (56%)

Query:    52 GPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGG 111
             GPE     N++I  L Q+ TD +++ M   +G +IS K  +D+ TN+ + +GFV F++ G
Sbjct:   373 GPEGC---NIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPG 429

Query:   112 YALAAVKALQDKGIHAQMARQQEQDPTNLYIANLP 146
              A AA++A+    I  +  + Q + P +   AN P
Sbjct:   430 SAQAAIQAMNGFQIGMKRLKVQLKRPKD---ANRP 461

 Score = 39 (18.8 bits), Expect = 9.8e-09, Sum P(2) = 9.8e-09
 Identities = 9/24 (37%), Positives = 11/24 (45%)

Query:   252 AYEHPMTPIPATIQYQRFTAGPGG 275
             AY +PM  + A    Q  T  P G
Sbjct:   228 AYLNPMATMAAVQMQQMATINPNG 251


>UNIPROTKB|Q9H361 [details] [associations]
            symbol:PABPC3 "Polyadenylate-binding protein 3"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
            "poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
            process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
            eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
            EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
            PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
            IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
            PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
            GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
            GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
            PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
            PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
            NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
            Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
        Length = 631

 Score = 158 (60.7 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 55/215 (25%), Positives = 95/215 (44%)

Query:    46 SPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFV 105
             +P TP+ P      +LY+  L  D T+  L    S  GPI+S +   D  T+    Y +V
Sbjct:     2 NPSTPSYPT----ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYV 57

Query:   106 DFESGGYALAAVKALQDKGIHAQMAR--QQEQDPT-------NLYIANLPLNFKECDLES 156
             +F+    A  A+  +    I  +  R    ++DP+       N+++ NL  +     L  
Sbjct:    58 NFQHTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYD 117

Query:   157 LLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFAD 216
              ++ +  ++S  ++ D N  SKG GF   E+ +  ++ I+  NG  L G K   + +F  
Sbjct:   118 TVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKV-FVGQFKS 175

Query:   217 SGLKKRGAGAGGPNIYRGPGAEVRLWGRDSADSQL 251
                K+R A  G       P   ++ +G D  D +L
Sbjct:   176 R--KEREAELGA-RAKEFPNVYIKNFGEDMDDERL 207

 Score = 152 (58.6 bits), Expect = 5.4e-08, P = 5.4e-08
 Identities = 42/163 (25%), Positives = 75/163 (46%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++++ L +   +K L +  S +G I+S   + D+  N  +GYGFV FE+   A  A+K 
Sbjct:   100 NIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKK 157

Query:   120 LQD------KGIHAQMARQQEQDPT---------NLYIANLPLNFKECDLESLLAKYVTV 164
             +        K    Q   ++E++           N+YI N   +  +  L+ L  K+   
Sbjct:   158 MNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPA 217

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSK 207
             +S +++ D +  SKG GF   E  +   + +   NG  L G +
Sbjct:   218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260


>UNIPROTKB|E1BWJ7 [details] [associations]
            symbol:PABPC1L "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
            EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
            RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
            Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
            OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
        Length = 632

 Score = 158 (60.7 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 42/161 (26%), Positives = 79/161 (49%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I+ L     +K L +  S +G I+S K + D+  N  RG+GFV FE+   A  A++ 
Sbjct:   100 NVFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDE--NGSRGHGFVHFETQEAATRAIQT 157

Query:   120 -----LQDKGI---HAQMARQQE-------QDPTNLYIANLPLNFKECDLESLLAKYVTV 164
                  L D+ +   H +  +++E        + TN+YI N   +  +  L  + +++   
Sbjct:   158 MNGMLLNDRKVFVGHFKSRKEREAEFGARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKT 217

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPG 205
             +S +++ D+   SKG GF   E  ++  + +   NG  + G
Sbjct:   218 LSVKVMMDHTGRSKGFGFVNFEKHEEAQKAVADMNGKEING 258

 Score = 138 (53.6 bits), Expect = 2.2e-06, P = 2.2e-06
 Identities = 50/201 (24%), Positives = 89/201 (44%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             +LY+  L  D T+  L    S  GPI+S +   D  + +  GY +++F+    A  A+  
Sbjct:    12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDT 71

Query:   120 LQDKGIHAQMAR--QQEQDPT-------NLYIANLPLNFKECDLESLLAKYVTVVSTRIL 170
             +  + I  +  R    ++DP        N++I NL  +     L    + +  ++S +++
Sbjct:    72 MNFEVIKGRPVRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVV 131

Query:   171 RDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRGAGAGGPN 230
              D N  S+G GF   E+++   + IQ  NG  L   K  + V    S  K+R A  G   
Sbjct:   132 CDENG-SRGHGFVHFETQEAATRAIQTMNGMLLNDRK--VFVGHFKSR-KEREAEFGA-R 186

Query:   231 IYRGPGAEVRLWGRDSADSQL 251
                     ++ +G D  D++L
Sbjct:   187 AMEFTNVYIKNFGDDMDDNRL 207

 Score = 116 (45.9 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
 Identities = 26/78 (33%), Positives = 42/78 (53%)

Query:    52 GPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGG 111
             G   +  TN+YI+    D  D  L  + S++G  +S K ++D T  + +G+GFV+FE   
Sbjct:   184 GARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHT-GRSKGFGFVNFEKHE 242

Query:   112 YALAAVKALQDKGIHAQM 129
              A  AV  +  K I+ +M
Sbjct:   243 EAQKAVADMNGKEINGRM 260

 Score = 86 (35.3 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
 Identities = 47/188 (25%), Positives = 74/188 (39%)

Query:   120 LQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKG 179
             L+ K    +  R       NLY+ NL     +  L    + Y T+ S +++ +  + SKG
Sbjct:   276 LKRKFEQMKQERVSRYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEGGH-SKG 334

Query:   180 VGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRGAGAGGPNIYRGPGAEV 239
              GF    S ++  + +   NG  +  S +PL V  A    +K    A   N Y    A +
Sbjct:   335 FGFVCFSSPEEATKAVTEMNGRIV--STKPLYVALAQ---RKEERKAILTNQYMQRLATM 389

Query:   240 R-LWGRDSADSQLAYEHPMTPIPATIQYQRFTAGPGGTGHI-PAGYTPWVPTQYVMPAPH 297
             R L G      Q    + + PIP       F + P     + PA  T W   Q   P P+
Sbjct:   390 RALPGPFLGSFQPPPGYFLPPIPQPQTRAAFYS-PSPVVPVRPA--TRW-SAQPTRPPPY 445

Query:   298 MSQVEVLK 305
              +   +L+
Sbjct:   446 PAATPILR 453


>UNIPROTKB|H0YBQ4 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
            Uniprot:H0YBQ4
        Length = 258

 Score = 114 (45.2 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
 Identities = 29/87 (33%), Positives = 48/87 (55%)

Query:    59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAV- 117
             TN+YI+   +D  D+ L ++  ++GP +S K + D++  K +G+GFV FE    A  AV 
Sbjct:    24 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVD 82

Query:   118 ----KALQDKGIHAQMARQQEQDPTNL 140
                 K L  K I+   A+++ +  T L
Sbjct:    83 EMNGKELNGKQIYVGRAQKKVERQTEL 109

 Score = 77 (32.2 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
 Identities = 27/102 (26%), Positives = 44/102 (43%)

Query:   139 NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLF 198
             NLY+ NL     +  L    + + T+ S +++ +    SKG GF    S ++  + +   
Sbjct:   128 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGR-SKGFGFVCFSSPEEATKAVTEM 186

Query:   199 NGSTLPGSKEPLLVKFADSGLKKRGAGAGGPNIYRGPGAEVR 240
             NG  +  + +PL V  A    +K    A   N Y    A VR
Sbjct:   187 NGRIV--ATKPLYVALAQ---RKEERQAHLTNQYMQRMASVR 223


>TAIR|locus:2094922 [details] [associations]
            symbol:PAB6 "poly(A) binding protein 6" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
            initiation factor activity" evidence=ISS] [GO:0006413
            "translational initiation" evidence=TAS] [GO:0016071 "mRNA
            metabolic process" evidence=TAS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
            GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
            EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
            HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
            ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
            GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
            OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
            Genevestigator:O04319 Uniprot:O04319
        Length = 537

 Score = 157 (60.3 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
 Identities = 51/175 (29%), Positives = 82/175 (46%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             NLY++ L    T   L  M   +G I+S K + +   +K  G+GFV F++   A++A  A
Sbjct:   113 NLYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSK--GFGFVQFDTEQSAVSARSA 170

Query:   120 LQDKGIH------AQMARQQE-------QDPTNLYIANLPLNFKECDLESLLAKYVTVVS 166
             L    ++      A+   + E       QD TN+Y+ NL     +  L +L ++Y TV S
Sbjct:   171 LHGSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSS 230

Query:   167 TRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKK 221
               ++RD    S+G GF    + +   + ++   G  L GSK+     F    LKK
Sbjct:   231 VVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQL-GSKK----LFVGKALKK 280

 Score = 150 (57.9 bits), Expect = 8.5e-08, Sum P(2) = 8.5e-08
 Identities = 46/186 (24%), Positives = 85/186 (45%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             +LY+  L+ D T+KDLI+  S   P++S     +  T K   Y +++F+S   A  A+  
Sbjct:    22 SLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTR 81

Query:   120 LQDKGIHAQMAR--QQEQDPT----------NLYIANLPLNFKECDLESLLAKYVTVVST 167
             L    +  +  R    ++D            NLY+ NL  +     LE +   + +++S 
Sbjct:    82 LNHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFGSILSC 141

Query:   168 RILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRGAG-A 226
             +++ +N   SKG GF + +++          +GS + G K+  + KF +   +   AG  
Sbjct:   142 KVVEENGQ-SKGFGFVQFDTEQSAVSARSALHGSMVYG-KKLFVAKFINKDERAAMAGNQ 199

Query:   227 GGPNIY 232
                N+Y
Sbjct:   200 DSTNVY 205

 Score = 103 (41.3 bits), Expect = 3.2e-08, Sum P(3) = 3.2e-08
 Identities = 23/79 (29%), Positives = 41/79 (51%)

Query:   138 TNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQL 197
             +NLY+ NL  +  E  L  +   Y  +VS +++   N  SKG GF    + ++  Q  + 
Sbjct:   304 SNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRY 363

Query:   198 FNGSTLPGSKEPLLVKFAD 216
              NG  + G  +P++V+ A+
Sbjct:   364 LNGFLVDG--KPIVVRVAE 380

 Score = 94 (38.1 bits), Expect = 3.2e-08, Sum P(3) = 3.2e-08
 Identities = 22/62 (35%), Positives = 36/62 (58%)

Query:    59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVK 118
             TN+Y++ L +  TD  L  + SQYG + S   + D    + RG+GFV+F +   A  A++
Sbjct:   202 TNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGM-GRSRGFGFVNFCNPENAKKAME 260

Query:   119 AL 120
             +L
Sbjct:   261 SL 262

 Score = 38 (18.4 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
 Identities = 10/26 (38%), Positives = 13/26 (50%)

Query:   235 PGAEVRLWGRDSADSQLAYEHPMTPI 260
             P  +V L  R S    L Y+HP  P+
Sbjct:   454 PAGKVPLKERRSM--HLVYKHPAYPV 477


>UNIPROTKB|Q6IP09 [details] [associations]
            symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
            species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
            [GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
            "eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
            "protein self-association" evidence=ISS] [GO:0048255 "mRNA
            stabilization" evidence=ISS] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
            GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
            GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
            UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
            GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
            Uniprot:Q6IP09
        Length = 633

 Score = 157 (60.3 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 53/215 (24%), Positives = 94/215 (43%)

Query:    46 SPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFV 105
             +P  P+ P      +LY+  L  D T+  L    S  GPI+S +   D  T +  GY +V
Sbjct:     2 NPSAPSYP----MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYV 57

Query:   106 DFESGGYALAAVKALQDKGIHAQMAR--QQEQDPT-------NLYIANLPLNFKECDLES 156
             +F+    A  A+  +    I  +  R    ++DP+       N++I NL  +     L  
Sbjct:    58 NFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117

Query:   157 LLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFAD 216
               + +  ++S +++ D N  SKG GF   E+++  ++ I   NG  L   ++  + +F  
Sbjct:   118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLL-NDRKVFVGRFKS 175

Query:   217 SGLKKRGAGAGGPNIYRGPGAEVRLWGRDSADSQL 251
                K+R A  G           ++ +G D  D +L
Sbjct:   176 R--KEREAELGA-RAKEFTNVYIKNFGEDMDDERL 207

 Score = 150 (57.9 bits), Expect = 9.2e-08, P = 9.2e-08
 Identities = 43/161 (26%), Positives = 78/161 (48%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I+ L +   +K L +  S +G I+S K + D+  N  +GYGFV FE+   A  A+  
Sbjct:   100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDK 157

Query:   120 -----LQDKGIH-----AQMARQQE-----QDPTNLYIANLPLNFKECDLESLLAKYVTV 164
                  L D+ +      ++  R+ E     ++ TN+YI N   +  +  L+    +Y   
Sbjct:   158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAA 217

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPG 205
             +S +++ D++  S+G GF   E  +   + +   NG  L G
Sbjct:   218 LSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNG 258

 Score = 106 (42.4 bits), Expect = 4.6e-06, Sum P(2) = 4.6e-06
 Identities = 31/87 (35%), Positives = 42/87 (48%)

Query:    59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAV- 117
             TN+YI+   +D  D+ L     QYG  +S K + D    K RG+GFV FE    A  AV 
Sbjct:   191 TNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVD 249

Query:   118 ----KALQDKGIHAQMARQQEQDPTNL 140
                 K L  K I    A+++ +  T L
Sbjct:   250 DMNGKDLNGKAIFVGRAQKKVERQTEL 276

 Score = 73 (30.8 bits), Expect = 4.6e-06, Sum P(2) = 4.6e-06
 Identities = 26/103 (25%), Positives = 44/103 (42%)

Query:   139 NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLF 198
             NLY+ NL     +  L      + ++ S +++ +    SKG GF    S ++  + +   
Sbjct:   295 NLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEGGR-SKGFGFVCFSSPEEATKAVTEM 353

Query:   199 NGSTLPGSKEPLLVKFADSGLKKRGAGAGGPNIYRGPGAEVRL 241
             NG  +  + +PL V  A    +K    A   N Y    A VR+
Sbjct:   354 NGRIV--ATKPLYVALAQ---RKEERQAHLTNQYMQRMASVRV 391


>MGI|MGI:1926034 [details] [associations]
            symbol:Celf3 "CUGBP, Elav-like family member 3"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
            "nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
            evidence=ISO;IDA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008380 "RNA
            splicing" evidence=ISO] [GO:0030317 "sperm motility" evidence=IMP]
            [GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
            evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 MGI:MGI:1926034 GO:GO:0005634
            GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0030317
            HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
            eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
            CTD:11189 OMA:HSAYLNP GO:GO:0000381 OrthoDB:EOG4RJG30 EMBL:AY165052
            EMBL:BC057553 IPI:IPI00461847 IPI:IPI00854025 RefSeq:NP_766022.1
            UniGene:Mm.44292 ProteinModelPortal:Q8CIN6 SMR:Q8CIN6 STRING:Q8CIN6
            PhosphoSite:Q8CIN6 PaxDb:Q8CIN6 PRIDE:Q8CIN6
            Ensembl:ENSMUST00000029784 GeneID:78784 KEGG:mmu:78784
            UCSC:uc008qgl.1 UCSC:uc008qgm.1 InParanoid:Q8CIN6 NextBio:349492
            Bgee:Q8CIN6 CleanEx:MM_TNRC4 Genevestigator:Q8CIN6 Uniprot:Q8CIN6
        Length = 465

 Score = 155 (59.6 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 47/172 (27%), Positives = 81/172 (47%)

Query:    61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKAL 120
             L++  + +   +KDL  +  Q+G I     I DK T   +G  F+ + +   AL A  AL
Sbjct:     9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68

Query:   121 QDK----G----IHAQMARQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRD 172
              ++    G    I  + A  + +    L++  L     + D+  +   + T+    +LR 
Sbjct:    69 HEQKTLPGMNRPIQVKPADSESRGDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRG 128

Query:   173 NNNTSKGVGFARLESKDKCDQMIQLFNGS-TLPGSKEPLLVKFADSGLKKRG 223
              + TSKG  F + ++  +    I   + S TLPG+   L+VKFAD+  K+RG
Sbjct:   129 PDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTE-KERG 179

 Score = 126 (49.4 bits), Expect = 3.2e-05, P = 3.2e-05
 Identities = 28/87 (32%), Positives = 50/87 (57%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I  L Q+ TD +++ M   +G +IS K  +D+ TN+ + +GFV F++   A AA++A
Sbjct:   381 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 440

Query:   120 LQDKGIHAQMARQQEQDPTNLYIANLP 146
             +    I  +  + Q + P +   AN P
Sbjct:   441 MNGFQIGMKRLKVQLKRPKD---ANRP 464

 Score = 89 (36.4 bits), Expect = 0.00088, Sum P(2) = 0.00088
 Identities = 21/76 (27%), Positives = 36/76 (47%)

Query:   128 QMARQQEQDPT--NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFAR 184
             Q  +QQ + P   N++I +LP  F + ++  +   +  V+S ++  D   N SK  GF  
Sbjct:   368 QQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVS 427

Query:   185 LESKDKCDQMIQLFNG 200
              ++       IQ  NG
Sbjct:   428 FDNPASAQAAIQAMNG 443

 Score = 66 (28.3 bits), Expect = 0.00088, Sum P(2) = 0.00088
 Identities = 19/71 (26%), Positives = 30/71 (42%)

Query:    50 PTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFES 109
             P   E      L++  L +  TD+D+  M   +G I     +L       +G  FV F++
Sbjct:    85 PADSESRGDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC-TVLRGPDGTSKGCAFVKFQT 143

Query:   110 GGYALAAVKAL 120
                A AA+  L
Sbjct:   144 HAEAQAAINTL 154


>DICTYBASE|DDB_G0270634 [details] [associations]
            symbol:DDB_G0270634 "putative splicing regulator"
            species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
            vesicle" evidence=IDA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            dictyBase:DDB_G0270634 EMBL:AAFI02000005 GO:GO:0045335
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            RefSeq:XP_646268.1 ProteinModelPortal:Q55D63
            EnsemblProtists:DDB0233675 GeneID:8617224 KEGG:ddi:DDB_G0270634
            InParanoid:Q55D63 OMA:CAFITFS ProtClustDB:CLSZ2497105
            Uniprot:Q55D63
        Length = 368

 Score = 153 (58.9 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 43/179 (24%), Positives = 82/179 (45%)

Query:    55 QLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYAL 114
             QL    +++  +     ++ +  + +++G I+    I DK TN  +G  F+ F +   A 
Sbjct:    14 QLGGFTVFVGHIPSSMNEEGVSQIFNKFGNILDITIIKDKRTNVSKGCAFITFSTKEEAD 73

Query:   115 AAVKALQDKGIHAQMARQQ----------EQDPTNLYIANLPLNFKECDLESLLAKYVTV 164
              A+    + G   +   +           E+    L+I  L  +  E  +  L   Y  +
Sbjct:    74 NALNTTNESGTFLENMNKPLQVKYSDNEIEKMERKLFIGMLGTS-DEDQIRILFGNYGII 132

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGS-TLPGSKEPLLVKFADSGLKKR 222
                 I+R+ +   KG GF +  ++D+ +  ++  +G  TLPGS  P++VKFAD+  +KR
Sbjct:   133 EDLNIVREKDGKPKGYGFIKYSTRDESENALREIDGKHTLPGSNLPIIVKFADTERQKR 191


>TAIR|locus:2134638 [details] [associations]
            symbol:LIF2 "LHP1-Interacting Factor 2" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
            [GO:0010048 "vernalization response" evidence=RCA] [GO:0016558
            "protein import into peroxisome matrix" evidence=RCA] [GO:0048573
            "photoperiodism, flowering" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 KO:K13161 UniGene:At.24279
            HSSP:Q9Y5S9 EMBL:AF367357 EMBL:AY113171 EMBL:AK227578
            IPI:IPI00532730 RefSeq:NP_001031566.1 RefSeq:NP_567192.1
            ProteinModelPortal:Q9ASP6 SMR:Q9ASP6 PRIDE:Q9ASP6
            EnsemblPlants:AT4G00830.1 EnsemblPlants:AT4G00830.2 GeneID:827998
            KEGG:ath:AT4G00830 TAIR:At4g00830 HOGENOM:HOG000243749
            InParanoid:Q9ASP6 PhylomeDB:Q9ASP6 ProtClustDB:CLSN2698006
            Genevestigator:Q9ASP6 Uniprot:Q9ASP6
        Length = 495

 Score = 155 (59.6 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 34/127 (26%), Positives = 66/127 (51%)

Query:    59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVK 118
             + ++I GL +D  ++DL ++C + G I   + + D+ +   +GY FV F++   A  A++
Sbjct:   116 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 175

Query:   119 ALQDKGIHAQMARQQEQDPTN-LYIANLPLNFKECDLESLLAKYVT-VVSTRILRDNNNT 176
              L  K    +  R    +  N L+I N+P N+ E +   ++      V +  +++D  NT
Sbjct:   176 ELHSKEFKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNT 235

Query:   177 SKGVGFA 183
             ++  GFA
Sbjct:   236 TRNRGFA 242


>UNIPROTKB|Q6GR16 [details] [associations]
            symbol:epabp-b "Embryonic polyadenylate-binding protein B"
            species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
            [GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
            "eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
            "chordate embryonic development" evidence=ISS] [GO:0043621 "protein
            self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
            evidence=ISS] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
            GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
            GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
            RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
            SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
            Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
        Length = 629

 Score = 155 (59.6 bits), Expect = 2.4e-08, P = 2.4e-08
 Identities = 42/161 (26%), Positives = 80/161 (49%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I+ L     +K L +  S +G I+S K + D+  +  RGYGFV FE+   A  A++ 
Sbjct:   100 NVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGS--RGYGFVHFETQEAANRAIQT 157

Query:   120 -----LQDKGI---HAQMARQQE-------QDPTNLYIANLPLNFKECDLESLLAKYVTV 164
                  L D+ +   H +  R++E        + TN+YI N   +  +  L+ + + +   
Sbjct:   158 MNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNT 217

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPG 205
             +S +++ DN+  S+G GF    + ++  + +   NG  + G
Sbjct:   218 LSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNG 258

 Score = 134 (52.2 bits), Expect = 6.1e-06, P = 6.1e-06
 Identities = 41/157 (26%), Positives = 72/157 (45%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             +LYI  L  D T+  L    S  GPI+S +   D  T +  GY +++F+    A  A+  
Sbjct:    12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71

Query:   120 LQDKGIHAQMAR--QQEQDPT-------NLYIANLPLNFKECDLESLLAKYVTVVSTRIL 170
             +  + I  +  R    ++DP        N++I NL  +     L    + +  ++S +++
Sbjct:    72 MNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVV 131

Query:   171 RDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSK 207
              D    S+G GF   E+++  ++ IQ  NG  L   K
Sbjct:   132 CDEYG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRK 167

 Score = 111 (44.1 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
 Identities = 24/78 (30%), Positives = 44/78 (56%)

Query:    52 GPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGG 111
             G + +  TN+YI+   +D  DK L  + S +G  +S K ++D +  + RG+GFV++ +  
Sbjct:   184 GAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNS-GRSRGFGFVNYGNHE 242

Query:   112 YALAAVKALQDKGIHAQM 129
              A  AV  +  K ++ +M
Sbjct:   243 EAQKAVTEMNGKEVNGRM 260

 Score = 91 (37.1 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
 Identities = 48/171 (28%), Positives = 69/171 (40%)

Query:   139 NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLF 198
             NLY+ NL     +  L    + Y T+ ST+++ +  + SKG GF    S ++  + +   
Sbjct:   295 NLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEGGH-SKGFGFVCFSSPEEATKAVTEM 353

Query:   199 NGSTLPGSKEPLLVKFADSGLKKRGAGAGGPNIYRGPGAEVRLWGRDSADS--QLA-YEH 255
             NG  +  S +PL V  A    +K    A   N Y    A +R        S  Q A Y  
Sbjct:   354 NGRIV--STKPLYVALAQ---RKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYFL 408

Query:   256 PMTPIPATIQYQRFTAGPGGTGHIPAGYTPWV-----PTQYVMPAPHMSQV 301
             P  P P+   +  ++  P      PA    W      P QY  PAP M  V
Sbjct:   409 PTMPQPSNRAF--YSPNPVAPVR-PA--PQWASHQSRPPQYQPPAPLMRAV 454


>UNIPROTKB|E1C903 [details] [associations]
            symbol:PABPC4 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
            binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
            EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
            UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
            Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
            NextBio:20822696 Uniprot:E1C903
        Length = 630

 Score = 156 (60.0 bits), Expect = 1.9e-08, P = 1.9e-08
 Identities = 44/161 (27%), Positives = 80/161 (49%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I+ L +   +K L +  S +G I+S K + D+  N  +GY FV FE+   A  A++ 
Sbjct:   100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEK 157

Query:   120 -----LQDKGIH-----AQMARQQE-----QDPTNLYIANLPLNFKECDLESLLAKYVTV 164
                  L D+ +      ++  R+ E     ++ TN+YI N   +  +  L+ L +KY   
Sbjct:   158 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKT 217

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPG 205
             +S +++ D    SKG GF   E  +  ++ ++  NG  + G
Sbjct:   218 LSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDING 258

 Score = 152 (58.6 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 50/201 (24%), Positives = 89/201 (44%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             +LY+  L  D T+  L    S  GP++S +   D  T +  GY +V+F+    A  A+  
Sbjct:    12 SLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71

Query:   120 LQDKGIHAQMAR--QQEQDPT-------NLYIANLPLNFKECDLESLLAKYVTVVSTRIL 170
             +    I  +  R    ++DP+       N++I NL  +     L    + +  ++S +++
Sbjct:    72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131

Query:   171 RDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRGAGAGGPN 230
              D N  SKG  F   E++D  D+ I+  NG  L   ++  + +F     K+R A  G   
Sbjct:   132 CDENG-SKGYAFVHFETQDAADRAIEKMNGMLL-NDRKVFVGRFKSR--KEREAELGA-K 186

Query:   231 IYRGPGAEVRLWGRDSADSQL 251
                     ++ +G D  D +L
Sbjct:   187 AKEFTNVYIKNFGDDMDDERL 207

 Score = 120 (47.3 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
 Identities = 27/71 (38%), Positives = 40/71 (56%)

Query:    59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVK 118
             TN+YI+    D  D+ L  + S+YG  +S K + D T  K +G+GFV FE    A  AV+
Sbjct:   191 TNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPT-GKSKGFGFVSFEKHEDANKAVE 249

Query:   119 ALQDKGIHAQM 129
              +  K I+ +M
Sbjct:   250 EMNGKDINGKM 260

 Score = 81 (33.6 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
 Identities = 23/77 (29%), Positives = 38/77 (49%)

Query:   139 NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLF 198
             NLYI NL     +  L    + + ++ S +++ ++   SKG GF    S ++  + +   
Sbjct:   295 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEM 353

Query:   199 NGSTLPGSKEPLLVKFA 215
             NG  + GSK PL V  A
Sbjct:   354 NGRIV-GSK-PLYVALA 368


>UNIPROTKB|F1SV06 [details] [associations]
            symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
            [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
            "poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
            GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
            GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
            EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
        Length = 631

 Score = 156 (60.0 bits), Expect = 1.9e-08, P = 1.9e-08
 Identities = 43/161 (26%), Positives = 82/161 (50%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I+ L +   +K L +  S +G I+S K + D+  N  +GY FV FE+   A  A++ 
Sbjct:   100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEK 157

Query:   120 -----LQDKGIH-----AQMARQQE-----QDPTNLYIANLPLNFKECDLESLLAKYVTV 164
                  L D+ +      ++  R+ E     ++ TN+YI N      + +L+ L +++   
Sbjct:   158 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKT 217

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPG 205
             +S +++RD +  SKG GF   E  +  ++ ++  NG  + G
Sbjct:   218 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISG 258

 Score = 148 (57.2 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 48/193 (24%), Positives = 87/193 (45%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             +LY+  L  D T+  L    S  GP++S +   D  T +  GY +V+F+    A  A+  
Sbjct:    12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71

Query:   120 LQDKGIHAQMAR--QQEQDPT-------NLYIANLPLNFKECDLESLLAKYVTVVSTRIL 170
             +    I  +  R    ++DP+       N++I NL  +     L    + +  ++S +++
Sbjct:    72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131

Query:   171 RDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRGAGAGGP- 229
              D N  SKG  F   E+++  D+ I+  NG  L   ++  + +F     ++   GA    
Sbjct:   132 CDENG-SKGYAFVHFETQEAADKAIEKMNGMLL-NDRKVFVGRFKSRKEREAELGAKAKE 189

Query:   230 --NIY-RGPGAEV 239
               N+Y +  G EV
Sbjct:   190 FTNVYIKNFGEEV 202

 Score = 107 (42.7 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
 Identities = 23/71 (32%), Positives = 41/71 (57%)

Query:    59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVK 118
             TN+YI+   ++  D++L  + SQ+G  +S K + D +  K +G+GFV +E    A  AV+
Sbjct:   191 TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVE 249

Query:   119 ALQDKGIHAQM 129
              +  K I  ++
Sbjct:   250 EMNGKEISGKV 260

 Score = 81 (33.6 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
 Identities = 23/77 (29%), Positives = 38/77 (49%)

Query:   139 NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLF 198
             NLYI NL     +  L    + + ++ S +++ ++   SKG GF    S ++  + +   
Sbjct:   295 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEM 353

Query:   199 NGSTLPGSKEPLLVKFA 215
             NG  + GSK PL V  A
Sbjct:   354 NGRIV-GSK-PLYVALA 368


>TAIR|locus:504955752 [details] [associations]
            symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
            KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
            EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
            ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
            EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
            TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
            ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
        Length = 358

 Score = 152 (58.6 bits), Expect = 1.9e-08, P = 1.9e-08
 Identities = 55/215 (25%), Positives = 98/215 (45%)

Query:    57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAA 116
             S   ++I GL +DTT+        +YG I  +  + D+ T + RG+GF+ F         
Sbjct:    17 SPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPS---VV 73

Query:   117 VKALQD----KGIHAQMAR--------QQEQD--PTNLYIANLPLNFKECDLESLLAKYV 162
              K ++D     G   ++ R         Q +D     +++  +P    E +L+   AKY 
Sbjct:    74 DKVIEDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYG 133

Query:   163 TVVSTRILRDNN-NTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKK 221
              VV  +++RD+  N S+G GF   +S++  D+++    G+ +  +   + +K A+    K
Sbjct:   134 NVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLS--KGNMIDMADTQVEIKKAEP---K 188

Query:   222 RGAGAGGPNIYRGPGAEVRLWGRDSADSQLAYEHP 256
             +      P+ Y   G+  R  GR S DS  +Y  P
Sbjct:   189 KSLNRSPPS-Y---GSHPR--GRSSNDSYASYGGP 217


>UNIPROTKB|A4IFC3 [details] [associations]
            symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
            [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
            "poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
            GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
            eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
            OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
            IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
            Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
            InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
        Length = 645

 Score = 156 (60.0 bits), Expect = 1.9e-08, P = 1.9e-08
 Identities = 43/161 (26%), Positives = 82/161 (50%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I+ L +   +K L +  S +G I+S K + D+  N  +GY FV FE+   A  A++ 
Sbjct:   100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEK 157

Query:   120 -----LQDKGIH-----AQMARQQE-----QDPTNLYIANLPLNFKECDLESLLAKYVTV 164
                  L D+ +      ++  R+ E     ++ TN+YI N      + +L+ L +++   
Sbjct:   158 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKT 217

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPG 205
             +S +++RD +  SKG GF   E  +  ++ ++  NG  + G
Sbjct:   218 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITG 258

 Score = 148 (57.2 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 48/193 (24%), Positives = 87/193 (45%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             +LY+  L  D T+  L    S  GP++S +   D  T +  GY +V+F+    A  A+  
Sbjct:    12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71

Query:   120 LQDKGIHAQMAR--QQEQDPT-------NLYIANLPLNFKECDLESLLAKYVTVVSTRIL 170
             +    I  +  R    ++DP+       N++I NL  +     L    + +  ++S +++
Sbjct:    72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131

Query:   171 RDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRGAGAGGP- 229
              D N  SKG  F   E+++  D+ I+  NG  L   ++  + +F     ++   GA    
Sbjct:   132 CDENG-SKGYAFVHFETQEAADKAIEKMNGMLL-NDRKVFVGRFKSRKEREAELGAKAKE 189

Query:   230 --NIY-RGPGAEV 239
               N+Y +  G EV
Sbjct:   190 FTNVYIKNFGEEV 202

 Score = 106 (42.4 bits), Expect = 7.3e-07, Sum P(2) = 7.3e-07
 Identities = 23/67 (34%), Positives = 39/67 (58%)

Query:    59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVK 118
             TN+YI+   ++  D++L  + SQ+G  +S K + D +  K +G+GFV +E    A  AV+
Sbjct:   191 TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVE 249

Query:   119 ALQDKGI 125
              +  K I
Sbjct:   250 EMNGKEI 256

 Score = 81 (33.6 bits), Expect = 7.3e-07, Sum P(2) = 7.3e-07
 Identities = 23/77 (29%), Positives = 38/77 (49%)

Query:   139 NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLF 198
             NLYI NL     +  L    + + ++ S +++ ++   SKG GF    S ++  + +   
Sbjct:   295 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEM 353

Query:   199 NGSTLPGSKEPLLVKFA 215
             NG  + GSK PL V  A
Sbjct:   354 NGRIV-GSK-PLYVALA 368


>UNIPROTKB|Q6DEY7 [details] [associations]
            symbol:epabp "Embryonic polyadenylate-binding protein"
            species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
            evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
            evidence=ISS] [GO:0043009 "chordate embryonic development"
            evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
            "negative regulation of nuclear-transcribed mRNA poly(A) tail
            shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
            eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
            KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
            ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
            GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
            HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
            Uniprot:Q6DEY7
        Length = 629

 Score = 152 (58.6 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 44/179 (24%), Positives = 87/179 (48%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I+ L +   +K L +  S +G I+S K + D+  +  RGYGFV FE+   A  A++ 
Sbjct:   100 NVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETQEAANRAIQT 157

Query:   120 -----LQDKGI---HAQMARQQE-------QDPTNLYIANLPLNFKECDLESLLAKYVTV 164
                  L D+ +   H +  R++E        + TN+YI N   +  +  L  + + +   
Sbjct:   158 MNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNT 217

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRG 223
             +S +++ D+   S+G GF    + ++  + +   NG  + G    + V  A   ++++G
Sbjct:   218 LSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRM--IYVGRAQKRIERQG 274

 Score = 138 (53.6 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 40/157 (25%), Positives = 73/157 (46%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             +LY+  L  D T+  L    S  GPI+S +   D  T +  GY +++F+    A  A+  
Sbjct:    12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71

Query:   120 LQDKGIHAQMAR--QQEQDPT-------NLYIANLPLNFKECDLESLLAKYVTVVSTRIL 170
             +  + I  +  R    ++DP        N++I NL  +     L    + +  ++S +++
Sbjct:    72 MNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVV 131

Query:   171 RDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSK 207
              D +  S+G GF   E+++  ++ IQ  NG  L   K
Sbjct:   132 CDEHG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRK 167

 Score = 115 (45.5 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
 Identities = 25/78 (32%), Positives = 44/78 (56%)

Query:    52 GPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGG 111
             G + +  TN+YI+   +D  DK L  + S +G  +S K ++D T  + RG+GFV++ +  
Sbjct:   184 GAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDT-GRSRGFGFVNYGNHE 242

Query:   112 YALAAVKALQDKGIHAQM 129
              A  AV  +  K ++ +M
Sbjct:   243 EAQKAVSEMNGKEVNGRM 260

 Score = 86 (35.3 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
 Identities = 47/172 (27%), Positives = 67/172 (38%)

Query:   139 NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLF 198
             NLY+ NL     +  L    + Y T+ S +++ +  + SKG GF    S ++  + +   
Sbjct:   295 NLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGGH-SKGFGFVCFSSPEEATKAVTEM 353

Query:   199 NGSTLPGSKEPLLVKFADSGLKKRGAGAGGPNIYRGPGAEVRLWGRDSADS--QLA-YEH 255
             NG  +  S +PL V  A    +K    A   N Y    A +R        S  Q A Y  
Sbjct:   354 NGRIV--STKPLYVALAQ---RKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYFL 408

Query:   256 PMTPIPATIQYQRFTAGPGGTGHIPAGYTP-WV-----PTQYVMPAPHMSQV 301
             P  P P    +  ++  P      P    P W      P QY  PAP M  V
Sbjct:   409 PAMPQPPNRTF--YSPNPVA----PVRQAPQWTSHQSRPPQYQPPAPLMRAV 454


>UNIPROTKB|D4AC21 [details] [associations]
            symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
            ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
            ArrayExpress:D4AC21 Uniprot:D4AC21
        Length = 588

 Score = 155 (59.6 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 43/161 (26%), Positives = 81/161 (50%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I+ L +   +K L +  S +G I+S K + D+  N  +GY FV FE+   A  A++ 
Sbjct:    29 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAANKAIEK 86

Query:   120 -----LQDKGIH-----AQMARQQE-----QDPTNLYIANLPLNFKECDLESLLAKYVTV 164
                  L D+ +      ++  R+ E     ++ TN+YI N      + +L  L +++   
Sbjct:    87 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKT 146

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPG 205
             +S +++RD +  SKG GF   E  +  ++ ++  NG  + G
Sbjct:   147 LSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSG 187

 Score = 104 (41.7 bits), Expect = 9.8e-07, Sum P(2) = 9.8e-07
 Identities = 22/65 (33%), Positives = 38/65 (58%)

Query:    59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVK 118
             TN+YI+   ++  D++L  + SQ+G  +S K + D  + K +G+GFV +E    A  AV+
Sbjct:   120 TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVE 178

Query:   119 ALQDK 123
              +  K
Sbjct:   179 EMNGK 183

 Score = 81 (33.6 bits), Expect = 9.8e-07, Sum P(2) = 9.8e-07
 Identities = 23/77 (29%), Positives = 38/77 (49%)

Query:   139 NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLF 198
             NLYI NL     +  L    + + ++ S +++ ++   SKG GF    S ++  + +   
Sbjct:   224 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEM 282

Query:   199 NGSTLPGSKEPLLVKFA 215
             NG  + GSK PL V  A
Sbjct:   283 NGRIV-GSK-PLYVALA 297


>RGD|1310759 [details] [associations]
            symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
            RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
            GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
            OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
        Length = 630

 Score = 155 (59.6 bits), Expect = 2.4e-08, P = 2.4e-08
 Identities = 44/161 (27%), Positives = 76/161 (47%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I+ L +   +K L +  S +G I+S K + D+  N  +G+GFV FE+   A  A++ 
Sbjct:   100 NVFIKNLNKTIDNKALYDTFSAFGNILSCKVVCDE--NGSKGHGFVHFETEEAAERAIEK 157

Query:   120 -----LQDKGIHA-QMARQQEQDP---------TNLYIANLPLNFKECDLESLLAKYVTV 164
                  L D+ +   Q   ++E++          TN+YI N      +  L  L  ++  V
Sbjct:   158 MNGMLLNDRKVFVGQFKSRKEREAELGTRTKEFTNVYIKNFGDRMDDKTLNGLFGRFGQV 217

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPG 205
             +S +++ D    SKG GF   E  +   + +   NG  L G
Sbjct:   218 LSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNG 258

 Score = 143 (55.4 bits), Expect = 5.8e-07, P = 5.8e-07
 Identities = 43/157 (27%), Positives = 71/157 (45%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             +LY+  L  D T+  L    S  GPI+S +   D  T +  GY  V+FE    A  A+  
Sbjct:    12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDT 71

Query:   120 LQDKGIHAQMAR--QQEQDPT-------NLYIANLPLNFKECDLESLLAKYVTVVSTRIL 170
             +    I  +  R    ++DP+       N++I NL        L    + +  ++S +++
Sbjct:    72 MNFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVV 131

Query:   171 RDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSK 207
              D N  SKG GF   E+++  ++ I+  NG  L   K
Sbjct:   132 CDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRK 167

 Score = 98 (39.6 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
 Identities = 22/70 (31%), Positives = 37/70 (52%)

Query:    59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVK 118
             TN+YI+       DK L  +  ++G ++S K + D+   K +G+GFV FE    A  AV 
Sbjct:   191 TNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEG-GKSKGFGFVSFERHEDAQKAVD 249

Query:   119 ALQDKGIHAQ 128
              +  K ++ +
Sbjct:   250 EMNGKELNGK 259

 Score = 84 (34.6 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
 Identities = 21/77 (27%), Positives = 38/77 (49%)

Query:   139 NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLF 198
             NLY+ NL     +  L+   + + T+ ST+++ +    SKG GF    S ++  + +   
Sbjct:   295 NLYVKNLDDGIDDERLQKEFSPFGTITSTKVMTEGGR-SKGFGFVCFSSPEEATKAVSEM 353

Query:   199 NGSTLPGSKEPLLVKFA 215
             NG  +  + +PL V  A
Sbjct:   354 NGRIV--ATKPLYVALA 368


>UNIPROTKB|E2R9I0 [details] [associations]
            symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
            [GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
            EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
            Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
        Length = 631

 Score = 155 (59.6 bits), Expect = 2.4e-08, P = 2.4e-08
 Identities = 43/161 (26%), Positives = 81/161 (50%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I+ L +   +K L +  S +G I+S K + D+  N  +GY FV FE+   A  A++ 
Sbjct:   100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEK 157

Query:   120 -----LQDKGIH-----AQMARQQE-----QDPTNLYIANLPLNFKECDLESLLAKYVTV 164
                  L D+ +      ++  R+ E     ++ TN+YI N      +  L+ L +++   
Sbjct:   158 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKT 217

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPG 205
             +S +++RD +  SKG GF   E  +  ++ ++  NG  + G
Sbjct:   218 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISG 258

 Score = 148 (57.2 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 48/193 (24%), Positives = 87/193 (45%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             +LY+  L  D T+  L    S  GP++S +   D  T +  GY +V+F+    A  A+  
Sbjct:    12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71

Query:   120 LQDKGIHAQMAR--QQEQDPT-------NLYIANLPLNFKECDLESLLAKYVTVVSTRIL 170
             +    I  +  R    ++DP+       N++I NL  +     L    + +  ++S +++
Sbjct:    72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131

Query:   171 RDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRGAGAGGP- 229
              D N  SKG  F   E+++  D+ I+  NG  L   ++  + +F     ++   GA    
Sbjct:   132 CDENG-SKGYAFVHFETQEAADKAIEKMNGMLL-NDRKVFVGRFKSRKEREAELGAKAKE 189

Query:   230 --NIY-RGPGAEV 239
               N+Y +  G EV
Sbjct:   190 FTNVYIKNFGEEV 202

 Score = 106 (42.4 bits), Expect = 6.9e-07, Sum P(2) = 6.9e-07
 Identities = 23/71 (32%), Positives = 40/71 (56%)

Query:    59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVK 118
             TN+YI+   ++  D+ L  + SQ+G  +S K + D +  K +G+GFV +E    A  AV+
Sbjct:   191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVE 249

Query:   119 ALQDKGIHAQM 129
              +  K I  ++
Sbjct:   250 EMNGKEISGKV 260

 Score = 81 (33.6 bits), Expect = 6.9e-07, Sum P(2) = 6.9e-07
 Identities = 23/77 (29%), Positives = 38/77 (49%)

Query:   139 NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLF 198
             NLYI NL     +  L    + + ++ S +++ ++   SKG GF    S ++  + +   
Sbjct:   295 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEM 353

Query:   199 NGSTLPGSKEPLLVKFA 215
             NG  + GSK PL V  A
Sbjct:   354 NGRIV-GSK-PLYVALA 368


>UNIPROTKB|D4AC14 [details] [associations]
            symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
            Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
        Length = 631

 Score = 155 (59.6 bits), Expect = 2.4e-08, P = 2.4e-08
 Identities = 43/161 (26%), Positives = 81/161 (50%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I+ L +   +K L +  S +G I+S K + D+  N  +GY FV FE+   A  A++ 
Sbjct:   100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAANKAIEK 157

Query:   120 -----LQDKGIH-----AQMARQQE-----QDPTNLYIANLPLNFKECDLESLLAKYVTV 164
                  L D+ +      ++  R+ E     ++ TN+YI N      + +L  L +++   
Sbjct:   158 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKT 217

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPG 205
             +S +++RD +  SKG GF   E  +  ++ ++  NG  + G
Sbjct:   218 LSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSG 258

 Score = 143 (55.4 bits), Expect = 5.8e-07, P = 5.8e-07
 Identities = 47/193 (24%), Positives = 87/193 (45%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             +LY+  L  D T+  L    S  GP++S +   D  T +  GY +V+F+    A  A+  
Sbjct:    12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71

Query:   120 LQDKGIHAQMAR--QQEQDPT-------NLYIANLPLNFKECDLESLLAKYVTVVSTRIL 170
             +    I  +  R    ++DP+       N++I NL  +     L    + +  ++S +++
Sbjct:    72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131

Query:   171 RDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRGAGAGGP- 229
              D N  SKG  F   E+++  ++ I+  NG  L   ++  + +F     ++   GA    
Sbjct:   132 CDENG-SKGYAFVHFETQEAANKAIEKMNGMLL-NDRKVFVGRFKSRKEREAELGAKAKE 189

Query:   230 --NIY-RGPGAEV 239
               N+Y +  G EV
Sbjct:   190 FTNVYIKNFGEEV 202

 Score = 104 (41.7 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
 Identities = 22/65 (33%), Positives = 38/65 (58%)

Query:    59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVK 118
             TN+YI+   ++  D++L  + SQ+G  +S K + D  + K +G+GFV +E    A  AV+
Sbjct:   191 TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVE 249

Query:   119 ALQDK 123
              +  K
Sbjct:   250 EMNGK 254

 Score = 81 (33.6 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
 Identities = 23/77 (29%), Positives = 38/77 (49%)

Query:   139 NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLF 198
             NLYI NL     +  L    + + ++ S +++ ++   SKG GF    S ++  + +   
Sbjct:   295 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEM 353

Query:   199 NGSTLPGSKEPLLVKFA 215
             NG  + GSK PL V  A
Sbjct:   354 NGRIV-GSK-PLYVALA 368


>UNIPROTKB|G3V9N0 [details] [associations]
            symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
            OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
        Length = 660

 Score = 155 (59.6 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 43/161 (26%), Positives = 81/161 (50%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I+ L +   +K L +  S +G I+S K + D+  N  +GY FV FE+   A  A++ 
Sbjct:   100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAANKAIEK 157

Query:   120 -----LQDKGIH-----AQMARQQE-----QDPTNLYIANLPLNFKECDLESLLAKYVTV 164
                  L D+ +      ++  R+ E     ++ TN+YI N      + +L  L +++   
Sbjct:   158 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKT 217

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPG 205
             +S +++RD +  SKG GF   E  +  ++ ++  NG  + G
Sbjct:   218 LSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSG 258

 Score = 143 (55.4 bits), Expect = 6.2e-07, P = 6.2e-07
 Identities = 47/193 (24%), Positives = 87/193 (45%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             +LY+  L  D T+  L    S  GP++S +   D  T +  GY +V+F+    A  A+  
Sbjct:    12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71

Query:   120 LQDKGIHAQMAR--QQEQDPT-------NLYIANLPLNFKECDLESLLAKYVTVVSTRIL 170
             +    I  +  R    ++DP+       N++I NL  +     L    + +  ++S +++
Sbjct:    72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131

Query:   171 RDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRGAGAGGP- 229
              D N  SKG  F   E+++  ++ I+  NG  L   ++  + +F     ++   GA    
Sbjct:   132 CDENG-SKGYAFVHFETQEAANKAIEKMNGMLL-NDRKVFVGRFKSRKEREAELGAKAKE 189

Query:   230 --NIY-RGPGAEV 239
               N+Y +  G EV
Sbjct:   190 FTNVYIKNFGEEV 202

 Score = 104 (41.7 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
 Identities = 22/65 (33%), Positives = 38/65 (58%)

Query:    59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVK 118
             TN+YI+   ++  D++L  + SQ+G  +S K + D  + K +G+GFV +E    A  AV+
Sbjct:   191 TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVE 249

Query:   119 ALQDK 123
              +  K
Sbjct:   250 EMNGK 254

 Score = 81 (33.6 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
 Identities = 23/77 (29%), Positives = 38/77 (49%)

Query:   139 NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLF 198
             NLYI NL     +  L    + + ++ S +++ ++   SKG GF    S ++  + +   
Sbjct:   295 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEM 353

Query:   199 NGSTLPGSKEPLLVKFA 215
             NG  + GSK PL V  A
Sbjct:   354 NGRIV-GSK-PLYVALA 368


>UNIPROTKB|E2R9I1 [details] [associations]
            symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0046983 "protein dimerization activity"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
            InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
            Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
        Length = 700

 Score = 155 (59.6 bits), Expect = 2.8e-08, P = 2.8e-08
 Identities = 43/161 (26%), Positives = 81/161 (50%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I+ L +   +K L +  S +G I+S K + D+  N  +GY FV FE+   A  A++ 
Sbjct:   140 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEK 197

Query:   120 -----LQDKGIH-----AQMARQQE-----QDPTNLYIANLPLNFKECDLESLLAKYVTV 164
                  L D+ +      ++  R+ E     ++ TN+YI N      +  L+ L +++   
Sbjct:   198 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKT 257

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPG 205
             +S +++RD +  SKG GF   E  +  ++ ++  NG  + G
Sbjct:   258 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISG 298

 Score = 106 (42.4 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
 Identities = 23/71 (32%), Positives = 40/71 (56%)

Query:    59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVK 118
             TN+YI+   ++  D+ L  + SQ+G  +S K + D +  K +G+GFV +E    A  AV+
Sbjct:   231 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVE 289

Query:   119 ALQDKGIHAQM 129
              +  K I  ++
Sbjct:   290 EMNGKEISGKV 300

 Score = 81 (33.6 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
 Identities = 23/77 (29%), Positives = 38/77 (49%)

Query:   139 NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLF 198
             NLYI NL     +  L    + + ++ S +++ ++   SKG GF    S ++  + +   
Sbjct:   335 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEM 393

Query:   199 NGSTLPGSKEPLLVKFA 215
             NG  + GSK PL V  A
Sbjct:   394 NGRIV-GSK-PLYVALA 408


>ZFIN|ZDB-GENE-110408-50 [details] [associations]
            symbol:celf3b "cugbp, Elav-like family member 3b"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-110408-50 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
            EMBL:BX005277 EMBL:CABZ01052818 EMBL:CABZ01052819 EMBL:CABZ01052820
            EMBL:CABZ01052821 EMBL:CABZ01052822 IPI:IPI00506596
            Ensembl:ENSDART00000024206 Uniprot:E7F293
        Length = 442

 Score = 152 (58.6 bits), Expect = 3.0e-08, P = 3.0e-08
 Identities = 49/174 (28%), Positives = 81/174 (46%)

Query:    61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKAL 120
             L+I  + ++  +KDL  +  QYG I     I DK T   +G  F+ + +   A+ A  AL
Sbjct:     9 LFIGQIPRNLEEKDLKPIFEQYGKIYELTVIKDKYTGMHKGCAFLTYCARESAIKAQSAL 68

Query:   121 QDKGIHAQMARQQEQDPTN---------LYIANLPLNFKECDLESLLAKYVTVVSTRILR 171
                  ++ M R  +  P +         L++  L     + D+  +   +  +    +LR
Sbjct:    69 HYSSGYSGMNRPIQVKPADSEGRGEDRKLFVGMLGKQQSDEDVRKIFEPFGGIDECTVLR 128

Query:   172 DNNNTSK-GVGFARLESKDKCDQMIQLFNGS-TLPGSKEPLLVKFADSGLKKRG 223
               + TSK G  F + +S  +    I   +GS TLPG+   L+VKFAD+  K+RG
Sbjct:   129 GPDGTSKAGCAFVKFQSHSEAQSAINSLHGSRTLPGASSSLVVKFADTE-KERG 181

 Score = 128 (50.1 bits), Expect = 1.7e-05, P = 1.7e-05
 Identities = 31/96 (32%), Positives = 53/96 (55%)

Query:    51 TGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESG 110
             TGPE     N++I  L Q+ TD +++ M   +G +IS K  +D+ TN+ + +GFV F++ 
Sbjct:   352 TGPEGC---NVFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNP 408

Query:   111 GYALAAVKALQDKGIHAQMARQQEQDPTNLYIANLP 146
               A  A++A+    I  +  + Q + P +   AN P
Sbjct:   409 ASAQTAIQAMNGFQIGMKRLKVQLKRPKD---ANRP 441


>WB|WBGene00004723 [details] [associations]
            symbol:sap-49 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            [GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
            [GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
            evidence=IMP] [GO:0042127 "regulation of cell proliferation"
            evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
            [GO:0040022 "feminization of hermaphroditic germ-line"
            evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0009792 GO:GO:0008380 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0005681
            GO:GO:0003723 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 EMBL:Z46676
            GO:GO:0040020 NextBio:883379 GO:GO:0040022 eggNOG:COG0724
            GeneTree:ENSGT00690000101901 PIR:T19069 RefSeq:NP_001021932.1
            ProteinModelPortal:Q09442 SMR:Q09442 IntAct:Q09442 STRING:Q09442
            PaxDb:Q09442 EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2
            GeneID:4363023 KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
            WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
            Uniprot:Q09442
        Length = 388

 Score = 151 (58.2 bits), Expect = 3.0e-08, P = 3.0e-08
 Identities = 48/190 (25%), Positives = 87/190 (45%)

Query:    52 GP--EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDF-- 107
             GP  E+     +Y+ GL +  ++  L  +  Q GP++S     D+ T   +G+GFV+F  
Sbjct:     4 GPIVERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMG 63

Query:   108 -ESGGYALAAVKALQDKG----IHAQMARQQEQDP-TNLYIANLPLNFKECDLESLLAKY 161
              E   YA+  +  ++  G    ++   A ++  D   N+++ NL     E  L    + +
Sbjct:    64 EEDADYAIKILNMIKLYGKPIKVNKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAF 123

Query:   162 VTVVST-RILRD-NNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFA---D 216
               ++   +I+RD ++ TSKG  F    S +  D  ++  NG  L      + V +A   D
Sbjct:   124 GVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFL--CNRAITVSYAFKRD 181

Query:   217 SGLKKRGAGA 226
             S  ++ G  A
Sbjct:   182 SKGERHGTAA 191


>UNIPROTKB|Q09442 [details] [associations]
            symbol:sap-49 "Splicing factor 3B subunit 4" species:6239
            "Caenorhabditis elegans" [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011
            GO:GO:0005681 GO:GO:0003723 GO:GO:0042127 GO:GO:0040035
            GO:GO:0007281 EMBL:Z46676 GO:GO:0040020 NextBio:883379
            GO:GO:0040022 eggNOG:COG0724 GeneTree:ENSGT00690000101901
            PIR:T19069 RefSeq:NP_001021932.1 ProteinModelPortal:Q09442
            SMR:Q09442 IntAct:Q09442 STRING:Q09442 PaxDb:Q09442
            EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2 GeneID:4363023
            KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
            WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
            Uniprot:Q09442
        Length = 388

 Score = 151 (58.2 bits), Expect = 3.0e-08, P = 3.0e-08
 Identities = 48/190 (25%), Positives = 87/190 (45%)

Query:    52 GP--EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDF-- 107
             GP  E+     +Y+ GL +  ++  L  +  Q GP++S     D+ T   +G+GFV+F  
Sbjct:     4 GPIVERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMG 63

Query:   108 -ESGGYALAAVKALQDKG----IHAQMARQQEQDP-TNLYIANLPLNFKECDLESLLAKY 161
              E   YA+  +  ++  G    ++   A ++  D   N+++ NL     E  L    + +
Sbjct:    64 EEDADYAIKILNMIKLYGKPIKVNKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAF 123

Query:   162 VTVVST-RILRD-NNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFA---D 216
               ++   +I+RD ++ TSKG  F    S +  D  ++  NG  L      + V +A   D
Sbjct:   124 GVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFL--CNRAITVSYAFKRD 181

Query:   217 SGLKKRGAGA 226
             S  ++ G  A
Sbjct:   182 SKGERHGTAA 191


>UNIPROTKB|Q5SZQ7 [details] [associations]
            symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH471121
            HOVERGEN:HBG107646 KO:K13207 HOGENOM:HOG000004754 CTD:11189
            EMBL:AL589765 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO GeneID:11189
            KEGG:hsa:11189 HGNC:HGNC:11967 PharmGKB:PA36654 GenomeRNAi:11189
            NextBio:42591 IPI:IPI00386736 RefSeq:NP_001166120.1 SMR:Q5SZQ7
            STRING:Q5SZQ7 Ensembl:ENST00000290585 UCSC:uc009wmy.3
            EvolutionaryTrace:Q5SZQ7 Uniprot:Q5SZQ7
        Length = 415

 Score = 151 (58.2 bits), Expect = 3.5e-08, P = 3.5e-08
 Identities = 47/173 (27%), Positives = 80/173 (46%)

Query:    61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKAL 120
             L++  + +   +KDL  +  Q+G I     I DK T   +G  F+ + +   AL A  AL
Sbjct:     9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68

Query:   121 QDKGIHAQMARQQEQDPTN---------LYIANLPLNFKECDLESLLAKYVTVVSTRILR 171
              ++     M R  +  P +         L++  L     + D+  +   + T+    +LR
Sbjct:    69 HEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLR 128

Query:   172 DNNNTSKGVGFARLESKDKCDQMIQLFNGS-TLPGSKEPLLVKFADSGLKKRG 223
               + TSKG  F + ++  +    I   + S TLPG+   L+VKFAD+  K+RG
Sbjct:   129 GPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTE-KERG 180

 Score = 126 (49.4 bits), Expect = 2.6e-05, P = 2.6e-05
 Identities = 28/87 (32%), Positives = 50/87 (57%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I  L Q+ TD +++ M   +G +IS K  +D+ TN+ + +GFV F++   A AA++A
Sbjct:   331 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 390

Query:   120 LQDKGIHAQMARQQEQDPTNLYIANLP 146
             +    I  +  + Q + P +   AN P
Sbjct:   391 MNGFQIGMKRLKVQLKRPKD---ANRP 414


>UNIPROTKB|C9JB16 [details] [associations]
            symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:AL161628 EMBL:AL445623 HGNC:HGNC:3313 IPI:IPI00645584
            ProteinModelPortal:C9JB16 SMR:C9JB16 STRING:C9JB16
            Ensembl:ENST00000423281 ArrayExpress:C9JB16 Bgee:C9JB16
            Uniprot:C9JB16
        Length = 90

 Score = 130 (50.8 bits), Expect = 3.8e-08, P = 3.8e-08
 Identities = 28/84 (33%), Positives = 49/84 (58%)

Query:   153 DLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLL 211
             +LE L ++Y  ++++RIL D     S+GVGF R + + + ++ I+  NG   PG+ EP+ 
Sbjct:     5 ELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPIT 64

Query:   212 VKFADSGLKKRGAGAGGPNIYRGP 235
             VKFA++  +K         +Y+ P
Sbjct:    65 VKFANNPSQKTNQAILS-QLYQSP 87

 Score = 95 (38.5 bits), Expect = 0.00029, P = 0.00029
 Identities = 25/76 (32%), Positives = 42/76 (55%)

Query:    71 TDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMA 130
             T K+L  + SQYG II+++ ++D+ T   RG GF+ F+     + A +A+  KG++ Q  
Sbjct:     2 TQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDK---RIEAEEAI--KGLNGQKP 56

Query:   131 RQQEQDPTNLYIANLP 146
                  +P  +  AN P
Sbjct:    57 -PGATEPITVKFANNP 71


>ZFIN|ZDB-GENE-040718-300 [details] [associations]
            symbol:celf4 "CUGBP, Elav-like family member 4"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-040718-300 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
            HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026 eggNOG:NOG251494
            HOGENOM:HOG000004754 OrthoDB:EOG4RJG30 EMBL:BC076238
            IPI:IPI00491989 RefSeq:NP_001002562.1 UniGene:Dr.81398
            ProteinModelPortal:Q6DGV1 SMR:Q6DGV1 GeneID:436835 KEGG:dre:436835
            CTD:56853 InParanoid:Q6DGV1 NextBio:20831267 ArrayExpress:Q6DGV1
            Bgee:Q6DGV1 Uniprot:Q6DGV1
        Length = 520

 Score = 152 (58.6 bits), Expect = 4.0e-08, P = 4.0e-08
 Identities = 52/198 (26%), Positives = 91/198 (45%)

Query:    39 NNVQHNGSPGT-PTGP-EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTT 96
             N + H  SP +  T P +      L+I  + ++  +KDL  +  ++G I     + D+ T
Sbjct:    25 NGISHTHSPASCATIPMKDHDAIKLFIGQIPRNLDEKDLRPLFEEFGKIYELTVLKDRFT 84

Query:    97 NKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTN---------LYIANLPL 147
                +G  F+ + +   AL A  AL ++     M R  +  P +         L++  L  
Sbjct:    85 GMHKGCAFLTYCARESALKAQTALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGML-- 142

Query:   148 NFKEC--DLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGS-TLP 204
             N ++C  D+  L   + ++    ILR  +  SKG  F +  +  +    I   +GS T+P
Sbjct:   143 NKQQCEDDVRRLFESFGSIEECTILRGPDGNSKGCAFVKYSTHAEAQAAISALHGSQTMP 202

Query:   205 GSKEPLLVKFADSGLKKR 222
             G+   L+VKFAD+  K+R
Sbjct:   203 GASSSLVVKFADTD-KER 219

 Score = 126 (49.4 bits), Expect = 3.7e-05, P = 3.7e-05
 Identities = 32/95 (33%), Positives = 54/95 (56%)

Query:    52 GPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGG 111
             GPE     NL+I  L Q+  D +L+ M   +G +IS+K  +D+ TN+ + +GFV F++ G
Sbjct:   431 GPEGC---NLFIYHLPQEFGDGELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFDNPG 487

Query:   112 YALAAVKALQDKGIHAQMARQQEQDPTNLYIANLP 146
              A AA++++    I  +  + Q + P +   AN P
Sbjct:   488 SAQAAIQSMNGFQIGMKRLKVQLKRPKD---ANRP 519


>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
            symbol:pabpc4 "poly(A) binding protein,
            cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
            EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
            ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
            GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
            NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
        Length = 637

 Score = 153 (58.9 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 44/161 (27%), Positives = 80/161 (49%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I+ L +   +K L +  S +G I+S K + D+  N  +GY FV FE+   A  A++ 
Sbjct:   101 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEK 158

Query:   120 -----LQDKGIH-----AQMARQQE-----QDPTNLYIANLPLNFKECDLESLLAKYVTV 164
                  L D+ +      ++  R+ E     ++ TN+YI N   +  +  L+ L  KY   
Sbjct:   159 MNGMLLNDRKVFVGRFKSRKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKYGKT 218

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPG 205
             +S +++ D    S+G GF   E  +  ++ ++  NG+ L G
Sbjct:   219 LSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEEMNGTELNG 259

 Score = 150 (57.9 bits), Expect = 9.3e-08, P = 9.3e-08
 Identities = 49/201 (24%), Positives = 89/201 (44%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             +LY+  L  D T+  L    S  GP++S +   D  T +  GY +V+F+    A  A+  
Sbjct:    13 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 72

Query:   120 LQDKGIHAQMAR--QQEQDPT-------NLYIANLPLNFKECDLESLLAKYVTVVSTRIL 170
             +    +  +  R    ++DP+       N++I NL  +     L    + +  ++S +++
Sbjct:    73 MNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 132

Query:   171 RDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRGAGAGGPN 230
              D N  SKG  F   E++D  D+ I+  NG  L   ++  + +F     K+R A  G   
Sbjct:   133 CDENG-SKGYAFVHFETQDAADRAIEKMNGMLL-NDRKVFVGRFKSR--KEREAEMGA-K 187

Query:   231 IYRGPGAEVRLWGRDSADSQL 251
                     ++ +G D  D +L
Sbjct:   188 AKEFTNVYIKNFGDDMDDQRL 208

 Score = 102 (41.0 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
 Identities = 23/62 (37%), Positives = 34/62 (54%)

Query:    59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVK 118
             TN+YI+    D  D+ L  +  +YG  +S K + D T  K RG+GFV +E    A  AV+
Sbjct:   192 TNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPT-GKSRGFGFVSYEKHEDANKAVE 250

Query:   119 AL 120
              +
Sbjct:   251 EM 252

 Score = 80 (33.2 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
 Identities = 23/77 (29%), Positives = 37/77 (48%)

Query:   139 NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLF 198
             NLYI NL     +  L    + + ++ S +++ +    SKG GF    S ++  + +   
Sbjct:   296 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGR-SKGFGFVCFSSPEEATKAVTEM 354

Query:   199 NGSTLPGSKEPLLVKFA 215
             NG  + GSK PL V  A
Sbjct:   355 NGRIV-GSK-PLYVALA 369


>UNIPROTKB|Q08E07 [details] [associations]
            symbol:CELF3 "CUGBP Elav-like family member 3" species:9913
            "Bos taurus" [GO:0048026 "positive regulation of mRNA splicing, via
            spliceosome" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0030317 "sperm motility"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0007283
            "spermatogenesis" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007283
            GO:GO:0003723 GO:GO:0030317 HOVERGEN:HBG107646 KO:K13207
            GO:GO:0048026 eggNOG:NOG251494 HOGENOM:HOG000004754
            GeneTree:ENSGT00560000076837 EMBL:BC123480 IPI:IPI00690976
            RefSeq:NP_001070313.1 UniGene:Bt.18201 ProteinModelPortal:Q08E07
            SMR:Q08E07 PRIDE:Q08E07 Ensembl:ENSBTAT00000033848 GeneID:513347
            KEGG:bta:513347 CTD:11189 InParanoid:Q08E07 OMA:HSAYLNP
            NextBio:20870823 ArrayExpress:Q08E07 GO:GO:0000381 Uniprot:Q08E07
        Length = 461

 Score = 151 (58.2 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 47/173 (27%), Positives = 80/173 (46%)

Query:    61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKAL 120
             L++  + +   +KDL  +  Q+G I     I DK T   +G  F+ + +   AL A  AL
Sbjct:     9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68

Query:   121 QDKGIHAQMARQQEQDPTN---------LYIANLPLNFKECDLESLLAKYVTVVSTRILR 171
              ++     M R  +  P +         L++  L     + D+  +   + T+    +LR
Sbjct:    69 HEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLR 128

Query:   172 DNNNTSKGVGFARLESKDKCDQMIQLFNGS-TLPGSKEPLLVKFADSGLKKRG 223
               + TSKG  F + ++  +    I   + S TLPG+   L+VKFAD+  K+RG
Sbjct:   129 GPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTE-KERG 180

 Score = 126 (49.4 bits), Expect = 3.1e-05, P = 3.1e-05
 Identities = 28/87 (32%), Positives = 50/87 (57%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I  L Q+ TD +++ M   +G +IS K  +D+ TN+ + +GFV F++   A AA++A
Sbjct:   377 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 436

Query:   120 LQDKGIHAQMARQQEQDPTNLYIANLP 146
             +    I  +  + Q + P +   AN P
Sbjct:   437 MNGFQIGMKRLKVQLKRPKD---ANRP 460


>UNIPROTKB|Q5SZQ8 [details] [associations]
            symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0007283 "spermatogenesis" evidence=IEA] [GO:0030317 "sperm
            motility" evidence=IEA] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=NAS] [GO:0003729 "mRNA binding" evidence=NAS]
            [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0003723 "RNA binding"
            evidence=IMP] [GO:0008380 "RNA splicing" evidence=IMP] [GO:0000381
            "regulation of alternative mRNA splicing, via spliceosome"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0048026
            "positive regulation of mRNA splicing, via spliceosome"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
            GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0007283
            GO:GO:0030317 GO:GO:0000398 HOVERGEN:HBG107646 KO:K13207
            GO:GO:0048026 eggNOG:NOG251494 CTD:11189 GO:GO:0000381
            OrthoDB:EOG4RJG30 EMBL:AF329264 EMBL:AY165003 EMBL:AL589765
            EMBL:BC052491 EMBL:BC068008 EMBL:BC104758 EMBL:BC143226 EMBL:U80746
            EMBL:AF284423 IPI:IPI00852836 IPI:IPI00852895 IPI:IPI00852999
            RefSeq:NP_009116.3 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO
            ProteinModelPortal:Q5SZQ8 SMR:Q5SZQ8 IntAct:Q5SZQ8
            MINT:MINT-4866187 STRING:Q5SZQ8 PhosphoSite:Q5SZQ8 DMDM:74756184
            PRIDE:Q5SZQ8 Ensembl:ENST00000290583 GeneID:11189 KEGG:hsa:11189
            UCSC:uc001eyr.3 UCSC:uc001eys.2 UCSC:uc009wmx.2
            GeneCards:GC01M151674 HGNC:HGNC:11967 HPA:HPA006292 MIM:612678
            neXtProt:NX_Q5SZQ8 PharmGKB:PA36654 PhylomeDB:Q5SZQ8
            EvolutionaryTrace:Q5SZQ8 GenomeRNAi:11189 NextBio:42591
            ArrayExpress:Q5SZQ8 Bgee:Q5SZQ8 CleanEx:HS_TNRC4
            Genevestigator:Q5SZQ8 Uniprot:Q5SZQ8
        Length = 465

 Score = 151 (58.2 bits), Expect = 4.3e-08, P = 4.3e-08
 Identities = 47/173 (27%), Positives = 80/173 (46%)

Query:    61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKAL 120
             L++  + +   +KDL  +  Q+G I     I DK T   +G  F+ + +   AL A  AL
Sbjct:     9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68

Query:   121 QDKGIHAQMARQQEQDPTN---------LYIANLPLNFKECDLESLLAKYVTVVSTRILR 171
              ++     M R  +  P +         L++  L     + D+  +   + T+    +LR
Sbjct:    69 HEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLR 128

Query:   172 DNNNTSKGVGFARLESKDKCDQMIQLFNGS-TLPGSKEPLLVKFADSGLKKRG 223
               + TSKG  F + ++  +    I   + S TLPG+   L+VKFAD+  K+RG
Sbjct:   129 GPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTE-KERG 180

 Score = 126 (49.4 bits), Expect = 3.2e-05, P = 3.2e-05
 Identities = 28/87 (32%), Positives = 50/87 (57%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I  L Q+ TD +++ M   +G +IS K  +D+ TN+ + +GFV F++   A AA++A
Sbjct:   381 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 440

Query:   120 LQDKGIHAQMARQQEQDPTNLYIANLP 146
             +    I  +  + Q + P +   AN P
Sbjct:   441 MNGFQIGMKRLKVQLKRPKD---ANRP 464


>RGD|1563168 [details] [associations]
            symbol:Celf3 "CUGBP, Elav-like family member 3" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=ISO] [GO:0003674 "molecular_function"
            evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=ISO] [GO:0005575
            "cellular_component" evidence=ND] [GO:0005634 "nucleus"
            evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0007283
            "spermatogenesis" evidence=ISO] [GO:0008150 "biological_process"
            evidence=ND] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0030317
            "sperm motility" evidence=ISO] [GO:0048026 "positive regulation of
            mRNA splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1563168 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0030317
            GO:GO:0048026 GeneTree:ENSGT00560000076837 GO:GO:0000381
            OrthoDB:EOG4RJG30 EMBL:AC133978 IPI:IPI00204869
            ProteinModelPortal:D4A916 Ensembl:ENSRNOT00000028324
            UCSC:RGD:1563168 Uniprot:D4A916
        Length = 494

 Score = 151 (58.2 bits), Expect = 4.8e-08, P = 4.8e-08
 Identities = 47/173 (27%), Positives = 80/173 (46%)

Query:    61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKAL 120
             L++  + +   +KDL  +  Q+G I     I DK T   +G  F+ + +   AL A  AL
Sbjct:     9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68

Query:   121 QDKGIHAQMARQQEQDPTN---------LYIANLPLNFKECDLESLLAKYVTVVSTRILR 171
              ++     M R  +  P +         L++  L     + D+  +   + T+    +LR
Sbjct:    69 HEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLR 128

Query:   172 DNNNTSKGVGFARLESKDKCDQMIQLFNGS-TLPGSKEPLLVKFADSGLKKRG 223
               + TSKG  F + ++  +    I   + S TLPG+   L+VKFAD+  K+RG
Sbjct:   129 GPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTE-KERG 180

 Score = 126 (49.4 bits), Expect = 3.5e-05, P = 3.5e-05
 Identities = 28/87 (32%), Positives = 50/87 (57%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I  L Q+ TD +++ M   +G +IS K  +D+ TN+ + +GFV F++   A AA++A
Sbjct:   410 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 469

Query:   120 LQDKGIHAQMARQQEQDPTNLYIANLP 146
             +    I  +  + Q + P +   AN P
Sbjct:   470 MNGFQIGMKRLKVQLKRPKD---ANRP 493


>FB|FBgn0035016 [details] [associations]
            symbol:CG4612 species:7227 "Drosophila melanogaster"
            [GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0003729 "mRNA
            binding" evidence=ISS] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:AE013599 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0008143 HSSP:P11940 eggNOG:NOG246493
            GeneTree:ENSGT00630000089747 EMBL:AY060413 RefSeq:NP_001246492.1
            RefSeq:NP_001246493.1 RefSeq:NP_611924.1 UniGene:Dm.773 SMR:Q9W158
            IntAct:Q9W158 MINT:MINT-870450 STRING:Q9W158
            EnsemblMetazoa:FBtr0072346 EnsemblMetazoa:FBtr0306137 GeneID:37914
            KEGG:dme:Dmel_CG4612 UCSC:CG4612-RA FlyBase:FBgn0035016
            InParanoid:Q9W158 OMA:EPYGRIT OrthoDB:EOG4KPRS4 GenomeRNAi:37914
            NextBio:806022 Uniprot:Q9W158
        Length = 307

 Score = 147 (56.8 bits), Expect = 5.0e-08, P = 5.0e-08
 Identities = 46/176 (26%), Positives = 77/176 (43%)

Query:    44 NGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYG 103
             +GS G   G        +YI+ L +   +K + +  S +G I++     D+  N  RGYG
Sbjct:    98 SGSTGGSGGNSSPDSGKIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNS-RGYG 156

Query:   104 FVDFESGGYALAAVKALQ-----DKGIHAQM---ARQQEQDPT----NLYIANLPLNFKE 151
             FV F+S   A AA++ +      ++ +H       R +EQ+      NLY+ NL   F E
Sbjct:   157 FVHFDSEEAARAAIEKVNGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTE 216

Query:   152 CDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSK 207
               L  +   Y  + S +++ D    S+  GF   E+       +   +G  L  +K
Sbjct:   217 QHLREMFEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNK 272


>UNIPROTKB|Q98SP8 [details] [associations]
            symbol:epabp-a "Embryonic polyadenylate-binding protein A"
            species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
            "poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
            initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
            embryonic development" evidence=IEP] [GO:0043621 "protein
            self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
            evidence=IDA] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
            GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
            HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
            RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
            SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
            Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
        Length = 629

 Score = 152 (58.6 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 41/161 (25%), Positives = 80/161 (49%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I+ L +   +K L +  S +G I+S K + D+  +  RGYGFV FE+   A  A++ 
Sbjct:   100 NVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETHEAANRAIQT 157

Query:   120 -----LQDKGI---HAQMARQQE-------QDPTNLYIANLPLNFKECDLESLLAKYVTV 164
                  L D+ +   H +  R++E        + TN+YI N   +  +  L  + + +   
Sbjct:   158 MNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNT 217

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPG 205
             +S +++ D++  S+G GF    + ++  + +   NG  + G
Sbjct:   218 LSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNG 258

 Score = 131 (51.2 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 40/157 (25%), Positives = 71/157 (45%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             +LYI  L  D T+  L    S  GPI+S +   D  T +   Y +++F+    A  A+  
Sbjct:    12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDT 71

Query:   120 LQDKGIHAQMAR--QQEQDPT-------NLYIANLPLNFKECDLESLLAKYVTVVSTRIL 170
             +  + I  +  R    ++DP        N++I NL  +     L    + +  ++S +++
Sbjct:    72 MNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVV 131

Query:   171 RDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSK 207
              D +  S+G GF   E+ +  ++ IQ  NG  L   K
Sbjct:   132 CDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRK 167

 Score = 111 (44.1 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
 Identities = 24/78 (30%), Positives = 44/78 (56%)

Query:    52 GPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGG 111
             G + +  TN+YI+   +D  DK L  + S +G  +S K ++D +  + RG+GFV++ +  
Sbjct:   184 GAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDS-GRSRGFGFVNYGNHE 242

Query:   112 YALAAVKALQDKGIHAQM 129
              A  AV  +  K ++ +M
Sbjct:   243 EAQKAVSEMNGKEVNGRM 260

 Score = 83 (34.3 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
 Identities = 22/77 (28%), Positives = 36/77 (46%)

Query:   139 NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLF 198
             NLY+ NL     +  L      Y T+ S +++ +  + SKG GF    S ++  + +   
Sbjct:   295 NLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEGGH-SKGFGFVCFSSPEEATKAVTEM 353

Query:   199 NGSTLPGSKEPLLVKFA 215
             NG  +  S +PL V  A
Sbjct:   354 NGRIV--STKPLYVALA 368


>CGD|CAL0001392 [details] [associations]
            symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
            "cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
            "cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
            evidence=IEA] [GO:0006446 "regulation of translational initiation"
            evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
            poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
            GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
            GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
            RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
            SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
            KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
        Length = 629

 Score = 152 (58.6 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 45/164 (27%), Positives = 80/164 (48%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKT-TNKCRGYGFVDFESGGYALAAVK 118
             N++I+ L     +K L +  S +G I+S K   D+   +KC  +GFV +E+   A AA++
Sbjct:   141 NIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEFGQSKC--FGFVHYETAEAAEAAIE 198

Query:   119 -----ALQDK----GIH-AQMARQQEQDP-----TNLYIANLPLNFKECDLESLLAKYVT 163
                   L D+    G H ++  R+ + +      TN+Y+ N+ LN+ E   E L + +  
Sbjct:   199 NVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGK 258

Query:   164 VVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSK 207
             + S  + +D +  SKG GF   E  +   + ++  N   + G K
Sbjct:   259 ITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQK 302


>UNIPROTKB|H0Y623 [details] [associations]
            symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:HSAYLNP
            EMBL:AL589765 HGNC:HGNC:11967 ProteinModelPortal:H0Y623
            PRIDE:H0Y623 Ensembl:ENST00000420342 Bgee:H0Y623 Uniprot:H0Y623
        Length = 466

 Score = 150 (57.9 bits), Expect = 5.6e-08, P = 5.6e-08
 Identities = 46/161 (28%), Positives = 76/161 (47%)

Query:    72 DKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDK----G--- 124
             +KDL  +  Q+G I     I DK T   +G  F+ + +   AL A  AL ++    G   
Sbjct:    22 EKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNR 81

Query:   125 -IHAQMARQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFA 183
              I  + A  + +    L++  L     + D+  +   + T+    +LR  + TSKG  F 
Sbjct:    82 PIQVKPADSESRGDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFV 141

Query:   184 RLESKDKCDQMIQLFNGS-TLPGSKEPLLVKFADSGLKKRG 223
             + ++  +    I   + S TLPG+   L+VKFAD+  K+RG
Sbjct:   142 KFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTE-KERG 181

 Score = 126 (49.4 bits), Expect = 3.2e-05, P = 3.2e-05
 Identities = 28/87 (32%), Positives = 50/87 (57%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I  L Q+ TD +++ M   +G +IS K  +D+ TN+ + +GFV F++   A AA++A
Sbjct:   382 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 441

Query:   120 LQDKGIHAQMARQQEQDPTNLYIANLP 146
             +    I  +  + Q + P +   AN P
Sbjct:   442 MNGFQIGMKRLKVQLKRPKD---ANRP 465

 Score = 89 (36.4 bits), Expect = 0.00089, Sum P(2) = 0.00089
 Identities = 21/76 (27%), Positives = 36/76 (47%)

Query:   128 QMARQQEQDPT--NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFAR 184
             Q  +QQ + P   N++I +LP  F + ++  +   +  V+S ++  D   N SK  GF  
Sbjct:   369 QQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVS 428

Query:   185 LESKDKCDQMIQLFNG 200
              ++       IQ  NG
Sbjct:   429 FDNPASAQAAIQAMNG 444

 Score = 66 (28.3 bits), Expect = 0.00089, Sum P(2) = 0.00089
 Identities = 19/71 (26%), Positives = 30/71 (42%)

Query:    50 PTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFES 109
             P   E      L++  L +  TD+D+  M   +G I     +L       +G  FV F++
Sbjct:    87 PADSESRGDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC-TVLRGPDGTSKGCAFVKFQT 145

Query:   110 GGYALAAVKAL 120
                A AA+  L
Sbjct:   146 HAEAQAAINTL 156


>UNIPROTKB|F1M5N1 [details] [associations]
            symbol:F1M5N1 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
            ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
        Length = 207

 Score = 139 (54.0 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 52/198 (26%), Positives = 85/198 (42%)

Query:    53 PEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGY 112
             PEQ+ K  L+I GL+ +TTD+ L +   Q+G +     + D  T + RG+GFV + +   
Sbjct:     6 PEQVRK--LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 63

Query:   113 ALAAVKALQDK--GIHAQMAR----QQEQDP-----TNLYIANLPLNFKECDLESLLAKY 161
               AA+ A   K  G   +  R    +  Q P       +++  +  + +E  L     +Y
Sbjct:    64 VDAAMNARPHKVDGRVVEPKRAVSIEDSQRPGAYLNMKIFVGAIKEDTEEHHLRDYFGQY 123

Query:   162 VTVVSTRILRDNNNTSK-GVGFARLESKDKCDQM-IQLF---NGSTLPGSKEPLLVKFAD 216
                    I+ D  +  K G  F   + +D  D++ IQ +   NG      K P   + A 
Sbjct:   124 GKTEVIEIVTDRGSGKKRGFAFVTFDDRDSVDKIVIQKYHTVNGHNCEVRKAPSKQEMAS 183

Query:   217 SGLKKRGAGAGGPNIYRG 234
             +   +RG    G N Y G
Sbjct:   184 ASSSQRGRSGSG-NCYNG 200


>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
            symbol:pabpc1l "poly(A) binding protein,
            cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
            HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
            UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
            GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
            Bgee:Q803E7 Uniprot:Q803E7
        Length = 620

 Score = 145 (56.1 bits), Expect = 3.3e-07, P = 3.3e-07
 Identities = 45/179 (25%), Positives = 84/179 (46%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I+ + +   +K L +  S +G I+S K + D+  N  +GYGFV FE+   A  A++ 
Sbjct:   100 NIFIKNMDESIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAANRAIET 157

Query:   120 -----LQDKGI---HAQMARQQEQDP-------TNLYIANLPLNFKECDLESLLAKYVTV 164
                  L D+ +   H +  +++E +        TN+YI N   +     L+++  ++   
Sbjct:   158 MNGMLLNDRKVFVGHFKSRKEREAEMGAKAVEFTNVYIKNFGEDIDSEKLKNIFTEFGKT 217

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRG 223
             +S  ++ D    S+G GF    +     + +   NG  L G    L V  A   L+++G
Sbjct:   218 LSVCVMTDERGRSRGFGFVNFVNHGDARRAVTEMNGKELNG--RVLYVGRAQKRLERQG 274

 Score = 135 (52.6 bits), Expect = 4.6e-06, P = 4.6e-06
 Identities = 39/157 (24%), Positives = 72/157 (45%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             +LY+  L  D T+  L    S  G I+S +   D  T +  GY +++F+    A  A+  
Sbjct:    12 SLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDT 71

Query:   120 LQDKGIHAQMAR--QQEQDPT-------NLYIANLPLNFKECDLESLLAKYVTVVSTRIL 170
             +  + I  +  R    ++DP        N++I N+  +     L    + +  ++S +++
Sbjct:    72 MNYEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVV 131

Query:   171 RDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSK 207
              D N  SKG GF   E+++  ++ I+  NG  L   K
Sbjct:   132 CDENG-SKGYGFVHFETQEAANRAIETMNGMLLNDRK 167

 Score = 102 (41.0 bits), Expect = 6.8e-08, Sum P(2) = 6.8e-08
 Identities = 22/78 (28%), Positives = 44/78 (56%)

Query:    52 GPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGG 111
             G + +  TN+YI+   +D   + L N+ +++G  +S   + D+   + RG+GFV+F + G
Sbjct:   184 GAKAVEFTNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDER-GRSRGFGFVNFVNHG 242

Query:   112 YALAAVKALQDKGIHAQM 129
              A  AV  +  K ++ ++
Sbjct:   243 DARRAVTEMNGKELNGRV 260

 Score = 95 (38.5 bits), Expect = 6.8e-08, Sum P(2) = 6.8e-08
 Identities = 27/96 (28%), Positives = 44/96 (45%)

Query:   120 LQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKG 179
             L+ K    +  R Q     NLY+ NL  +  +  L    A Y T+ S +++ D  + S+G
Sbjct:   276 LKRKFEQIKQERIQRYQGVNLYVKNLDDSIDDEKLRKEFAPYGTITSAKVMTDGGH-SRG 334

Query:   180 VGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFA 215
              GF    S ++  + +   NG  +  S +PL V  A
Sbjct:   335 FGFVCFSSPEEATKAVTEMNGRIV--STKPLYVALA 368


>UNIPROTKB|E2RJS6 [details] [associations]
            symbol:E2RJS6 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
            Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03015762
            Ensembl:ENSCAFT00000024318 Uniprot:E2RJS6
        Length = 316

 Score = 145 (56.1 bits), Expect = 9.4e-08, P = 9.4e-08
 Identities = 58/205 (28%), Positives = 96/205 (46%)

Query:    49 TPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFE 108
             +P  PEQL K  L+IRGL+ +TTD+ L +   Q+G +     + D  T + RG+GFV F 
Sbjct:     6 SPKEPEQLWK--LFIRGLSFETTDESLRSHFEQWGTLTGCVVMRDPNTKRSRGFGFVMFA 63

Query:   109 SGGYALAAVKALQDKGIHAQM-------ARQQEQDPTN-LYIANLPLN-FKEC--DLESL 157
             +     AA+ A  +K ++ ++       +R+  Q P   L +  + +   KE   + E  
Sbjct:    64 TVEEVDAAMNARPNK-VNGRVLEPKRFVSREDSQRPAAYLTVKKIFVGGIKEDTEEHEDY 122

Query:   158 LAKYVTVVSTRILRDNNNTSK-GVGFARLESKDKCDQM-IQLF---NGSTLPGSKEPLLV 212
               +Y       ++ D  +  K G  F   ++ D  DQ+ IQ +   NG +    K  L  
Sbjct:   123 FEQYGKFEVIEVMTDQGSGKKRGFAFVTFDNHDSVDQIVIQKYHTVNGHSCEVRKALLKQ 182

Query:   213 KFADSGLKKRG-AGAGGPNIYRGPG 236
             + A +   +RG +G+G     RG G
Sbjct:   183 EMASASFSQRGQSGSGNFGGGRGGG 207


>TAIR|locus:2049339 [details] [associations]
            symbol:AT2G21690 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002685
            GenomeReviews:CT485783_GR GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AC007019 HOGENOM:HOG000276232 EMBL:AC007119
            HSSP:Q14103 IPI:IPI00516548 PIR:B84604 RefSeq:NP_179762.1
            UniGene:At.52858 ProteinModelPortal:Q9SJ28 SMR:Q9SJ28
            EnsemblPlants:AT2G21690.1 GeneID:816707 KEGG:ath:AT2G21690
            TAIR:At2g21690 eggNOG:NOG254172 InParanoid:Q9SJ28 OMA:RSKCVNV
            PhylomeDB:Q9SJ28 ProtClustDB:CLSN2913216 ArrayExpress:Q9SJ28
            Genevestigator:Q9SJ28 Uniprot:Q9SJ28
        Length = 117

 Score = 126 (49.4 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 23/47 (48%), Positives = 34/47 (72%)

Query:    62 YIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFE 108
             ++RGL QDT +KDL ++ S++G +I +K I D+ T K R +GFV FE
Sbjct:    10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFE 56


>TAIR|locus:2825067 [details] [associations]
            symbol:BRN2 "Bruno-like 2" species:3702 "Arabidopsis
            thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA;ISS] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 KO:K13207 IPI:IPI00516617 RefSeq:NP_973752.1
            UniGene:At.42544 ProteinModelPortal:F4I0X0 SMR:F4I0X0 PRIDE:F4I0X0
            EnsemblPlants:AT1G03457.2 GeneID:839497 KEGG:ath:AT1G03457
            OMA:MENEERV Uniprot:F4I0X0
        Length = 438

 Score = 139 (54.0 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
 Identities = 32/86 (37%), Positives = 53/86 (61%)

Query:   140 LYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFN 199
             L++  LP N  E +++SL ++Y T+   +ILR +  TSKG  F + ESK++    ++  N
Sbjct:   111 LFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALN 170

Query:   200 GS-TLPGSKEPLLVKFADSGLKKRGA 224
             G   + G+  PL+VK+AD+  K+R A
Sbjct:   171 GRHIMEGANVPLIVKWADTE-KERQA 195

 Score = 96 (38.9 bits), Expect = 0.00012, Sum P(2) = 0.00012
 Identities = 28/105 (26%), Positives = 50/105 (47%)

Query:   133 QEQDPT--NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKD 189
             Q + P   NL+I N+P  F++ +L +    +  V+S ++  D     SK  GF   +S+ 
Sbjct:   332 QTEGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQA 391

Query:   190 KCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRGAGAGGPNIYRG 234
                  I   NG  L G K  + +K  D+G +++   +  P ++ G
Sbjct:   392 AAQNAINTMNGCQLSGKKLKVQLK-RDNGQQQQQQQSKNP-LFNG 434

 Score = 66 (28.3 bits), Expect = 0.00012, Sum P(2) = 0.00012
 Identities = 18/65 (27%), Positives = 38/65 (58%)

Query:    61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKAL 120
             L++  L ++ ++ ++ ++ S+YG I   + IL  +    +G  F+ +ES   A+AA++AL
Sbjct:   111 LFVGMLPKNVSETEVQSLFSEYGTIKDLQ-ILRGSLQTSKGCLFLKYESKEQAVAAMEAL 169

Query:   121 QDKGI 125
               + I
Sbjct:   170 NGRHI 174

 Score = 47 (21.6 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
 Identities = 11/52 (21%), Positives = 24/52 (46%)

Query:    54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFV 105
             E   +  L++  + +  T+  L+ +  ++  +     I +KTT   RG  F+
Sbjct:     7 ENEERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFL 58


>SGD|S000004961 [details] [associations]
            symbol:PUB1 "Poly (A)+ RNA-binding protein" species:4932
            "Saccharomyces cerevisiae" [GO:0010494 "cytoplasmic stress granule"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000184
            "nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
            [GO:0003729 "mRNA binding" evidence=IMP;IDA] [GO:0043488
            "regulation of mRNA stability" evidence=IMP] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
            evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0034063
            "stress granule assembly" evidence=IMP] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            SGD:S000004961 GO:GO:0005634 GO:GO:0008266 GO:GO:0000184
            GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006947
            GO:GO:0043488 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
            EMBL:L13725 EMBL:L20767 EMBL:L01797 EMBL:Z71292 PIR:S62928
            RefSeq:NP_014382.1 PDB:2LA4 PDB:3MD1 PDB:3MD3 PDBsum:2LA4
            PDBsum:3MD1 PDBsum:3MD3 ProteinModelPortal:P32588 SMR:P32588
            DIP:DIP-5480N IntAct:P32588 MINT:MINT-499485 STRING:P32588
            PaxDb:P32588 PeptideAtlas:P32588 EnsemblFungi:YNL016W GeneID:855716
            KEGG:sce:YNL016W GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
            KO:K13201 OMA:PAYNTTV OrthoDB:EOG4SN4XJ EvolutionaryTrace:P32588
            NextBio:980072 Genevestigator:P32588 GermOnline:YNL016W
            Uniprot:P32588
        Length = 453

 Score = 145 (56.1 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
 Identities = 48/176 (27%), Positives = 80/176 (45%)

Query:    51 TGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYG-PIISTKAILDKTTNKCRGYGFVDFES 109
             TG  + S   LY+  L +  T+ D++    Q G PI + K ++DK  NK   Y FV++  
Sbjct:    67 TGGRETSDRVLYVGNLDKAITE-DILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQ 124

Query:   110 GGYALAAVKALQDKGIH--------AQMARQQEQDPT-NLYIANLPLNFKECDLESLLAK 160
                A  A++ L  K I         A  ++Q   D T NL++ +L +N  +  L +    
Sbjct:   125 SHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKD 184

Query:   161 YVTVVSTRILRD-NNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFA 215
             + + +S  ++ D    +S+G GF    S+D     +    G  L G   PL + +A
Sbjct:   185 FPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG--RPLRINWA 238

 Score = 40 (19.1 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
 Identities = 9/27 (33%), Positives = 11/27 (40%)

Query:   273 PGGTGHIPAGYTPWVPTQYVMPAPHMS 299
             P    HI     P V T Y+   PH +
Sbjct:   326 PQAVDHIIRSAPPRVTTAYIGNIPHFA 352


>UNIPROTKB|I3LB68 [details] [associations]
            symbol:DAZAP1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
            GeneTree:ENSGT00700000104255 EMBL:FP325262 RefSeq:NP_001231435.1
            UniGene:Ssc.1299 Ensembl:ENSSSCT00000023438 GeneID:100625005
            KEGG:ssc:100625005 Uniprot:I3LB68
        Length = 406

 Score = 115 (45.5 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
 Identities = 23/58 (39%), Positives = 37/58 (63%)

Query:    51 TGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFE 108
             +G +++ K  L++ GL   TT + L +  SQYG ++    + DKTTN+ RG+GFV F+
Sbjct:     4 SGADEIGK--LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFK 59

 Score = 73 (30.8 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
 Identities = 37/171 (21%), Positives = 62/171 (36%)

Query:   131 RQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRD-NNNTSKGVGFARLESKD 189
             R        +++  +P N  E +L     K+  V    ++ D      +G GF   E + 
Sbjct:   106 RSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQ 165

Query:   190 KCDQMIQLFNGSTLPGSKEPLLVKFADS-GLKKRGAGAGGPNIYRG---PGAEVRLWGRD 245
               DQ + + +   + G K  + VK A+    K +  G  G + +     P A     G+ 
Sbjct:   166 SVDQAVNM-HFHDIMGKK--VEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQP 222

Query:   246 SADSQLAYEHPMTPIPATIQYQRFTAGPGGTGHIPAGYTPWVPTQYVMPAP 296
                 Q  Y      +PA      +   P G G  P    P+  T Y++  P
Sbjct:   223 PPTWQQGYGPQGMWVPAGQAIGGYGPPPAGRG-APPPPPPF--TSYIVSTP 270


>UNIPROTKB|F1NH82 [details] [associations]
            symbol:F1NH82 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
            EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
            Ensembl:ENSGALT00000023332 Uniprot:F1NH82
        Length = 469

 Score = 113 (44.8 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
 Identities = 29/87 (33%), Positives = 47/87 (54%)

Query:    59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAV- 117
             TN+YI+   +D  D+ L  +  ++GP +S K + D++  K +G+GFV FE    A  AV 
Sbjct:    23 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVD 81

Query:   118 ----KALQDKGIHAQMARQQEQDPTNL 140
                 K L  K I+   A+++ +  T L
Sbjct:    82 EMNGKELNGKQIYVGRAQKKVERQTEL 108

 Score = 77 (32.2 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
 Identities = 27/102 (26%), Positives = 44/102 (43%)

Query:   139 NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLF 198
             NLY+ NL     +  L    + + T+ S +++ +    SKG GF    S ++  + +   
Sbjct:   127 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGR-SKGFGFVCFSSPEEATKAVTEM 185

Query:   199 NGSTLPGSKEPLLVKFADSGLKKRGAGAGGPNIYRGPGAEVR 240
             NG  +  + +PL V  A    +K    A   N Y    A VR
Sbjct:   186 NGRIV--ATKPLYVALAQ---RKEERQAHLTNQYMQRMASVR 222


>UNIPROTKB|E2R6E4 [details] [associations]
            symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
            GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
            RefSeq:XP_003432858.1 Ensembl:ENSCAFT00000031038 GeneID:100683271
            KEGG:cfa:100683271 Uniprot:E2R6E4
        Length = 407

 Score = 115 (45.5 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
 Identities = 23/58 (39%), Positives = 37/58 (63%)

Query:    51 TGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFE 108
             +G +++ K  L++ GL   TT + L +  SQYG ++    + DKTTN+ RG+GFV F+
Sbjct:     4 SGADEIGK--LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFK 59

 Score = 73 (30.8 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
 Identities = 37/171 (21%), Positives = 62/171 (36%)

Query:   131 RQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRD-NNNTSKGVGFARLESKD 189
             R        +++  +P N  E +L     K+  V    ++ D      +G GF   E + 
Sbjct:   106 RSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQ 165

Query:   190 KCDQMIQLFNGSTLPGSKEPLLVKFADS-GLKKRGAGAGGPNIYRG---PGAEVRLWGRD 245
               DQ + + +   + G K  + VK A+    K +  G  G + +     P A     G+ 
Sbjct:   166 SVDQAVNM-HFHDIMGKK--VEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQP 222

Query:   246 SADSQLAYEHPMTPIPATIQYQRFTAGPGGTGHIPAGYTPWVPTQYVMPAP 296
                 Q  Y      +PA      +   P G G  P    P+  T Y++  P
Sbjct:   223 PPTWQQGYGPQGMWVPAGQAIGGYGPPPAGRG-APPPPPPF--TSYIVSTP 270


>UNIPROTKB|Q96EP5 [details] [associations]
            symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
            development" evidence=IEA] [GO:0007283 "spermatogenesis"
            evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0007275 GO:GO:0005634 GO:GO:0005737
            GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007283
            GO:GO:0003723 eggNOG:COG0724 EMBL:AF181719 EMBL:BC012062
            EMBL:AK056850 IPI:IPI00165230 IPI:IPI00335930 RefSeq:NP_061832.2
            RefSeq:NP_733829.1 UniGene:Hs.222510 PDB:2DGS PDB:2DH8 PDBsum:2DGS
            PDBsum:2DH8 ProteinModelPortal:Q96EP5 SMR:Q96EP5 IntAct:Q96EP5
            STRING:Q96EP5 PhosphoSite:Q96EP5 DMDM:44887869
            REPRODUCTION-2DPAGE:IPI00165230 PaxDb:Q96EP5 PRIDE:Q96EP5
            DNASU:26528 Ensembl:ENST00000233078 Ensembl:ENST00000336761
            GeneID:26528 KEGG:hsa:26528 UCSC:uc002lsm.3 UCSC:uc002lsn.3
            CTD:26528 GeneCards:GC19P001407 HGNC:HGNC:2683 HPA:HPA004201
            HPA:HPA004631 MIM:607430 neXtProt:NX_Q96EP5 PharmGKB:PA27153
            HOGENOM:HOG000234441 HOVERGEN:HBG002295 InParanoid:Q96EP5 KO:K14411
            OMA:HNLDGRN OrthoDB:EOG40ZQXT PhylomeDB:Q96EP5 ChiTaRS:DAZAP1
            EvolutionaryTrace:Q96EP5 GenomeRNAi:26528 NextBio:48864
            ArrayExpress:Q96EP5 Bgee:Q96EP5 CleanEx:HS_DAZAP1
            Genevestigator:Q96EP5 GermOnline:ENSG00000071626 Uniprot:Q96EP5
        Length = 407

 Score = 115 (45.5 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
 Identities = 23/58 (39%), Positives = 37/58 (63%)

Query:    51 TGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFE 108
             +G +++ K  L++ GL   TT + L +  SQYG ++    + DKTTN+ RG+GFV F+
Sbjct:     4 SGADEIGK--LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFK 59

 Score = 73 (30.8 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
 Identities = 37/171 (21%), Positives = 62/171 (36%)

Query:   131 RQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRD-NNNTSKGVGFARLESKD 189
             R        +++  +P N  E +L     K+  V    ++ D      +G GF   E + 
Sbjct:   106 RSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQ 165

Query:   190 KCDQMIQLFNGSTLPGSKEPLLVKFADS-GLKKRGAGAGGPNIYRG---PGAEVRLWGRD 245
               DQ + + +   + G K  + VK A+    K +  G  G + +     P A     G+ 
Sbjct:   166 SVDQAVNM-HFHDIMGKK--VEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQP 222

Query:   246 SADSQLAYEHPMTPIPATIQYQRFTAGPGGTGHIPAGYTPWVPTQYVMPAP 296
                 Q  Y      +PA      +   P G G  P    P+  T Y++  P
Sbjct:   223 PPTWQQGYGPQGMWVPAGQAIGGYGPPPAGRG-APPPPPPF--TSYIVSTP 270


>RGD|1305280 [details] [associations]
            symbol:Dazap1 "DAZ associated protein 1" species:10116 "Rattus
            norvegicus" [GO:0001893 "maternal placenta development"
            evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
            "cytoplasm" evidence=ISO] [GO:0007283 "spermatogenesis"
            evidence=ISO] [GO:0008283 "cell proliferation" evidence=ISO]
            [GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0005730
            "nucleolus" evidence=ISO] [GO:0005844 "polysome" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:1305280 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH474029 eggNOG:COG0724
            CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
            OrthoDB:EOG40ZQXT OMA:GGYDMYN IPI:IPI00365961 EMBL:BC098930
            RefSeq:NP_001020913.1 UniGene:Rn.16769 SMR:Q4KLZ3 GeneID:362836
            KEGG:rno:362836 UCSC:RGD:1305280 InParanoid:Q4KLZ3 NextBio:681451
            Genevestigator:Q4KLZ3 Uniprot:Q4KLZ3
        Length = 405

 Score = 114 (45.2 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
 Identities = 23/57 (40%), Positives = 36/57 (63%)

Query:    52 GPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFE 108
             G +++ K  L++ GL   TT + L +  SQYG ++    + DKTTN+ RG+GFV F+
Sbjct:     5 GADEIGK--LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFK 59

 Score = 74 (31.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
 Identities = 37/171 (21%), Positives = 63/171 (36%)

Query:   131 RQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRD-NNNTSKGVGFARLESKD 189
             R        +++  +P N  E +L     K+  V    ++ D      +G GF   E + 
Sbjct:   105 RSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQ 164

Query:   190 KCDQMIQLFNGSTLPGSKEPLLVKFADS-GLKKRGAGAGGPNIY--RGPGAEVRLW-GRD 245
               DQ + + +   + G K  + VK A+    K +  G  G + +  R   +    W G+ 
Sbjct:   165 SVDQAVNM-HFHDIMGKK--VEVKRAEPRDSKNQAPGQPGASQWGSRVAPSAANGWAGQP 221

Query:   246 SADSQLAYEHPMTPIPATIQYQRFTAGPGGTGHIPAGYTPWVPTQYVMPAP 296
                 Q  Y      +PA      +   P G G  P    P+  T Y++  P
Sbjct:   222 PPTWQQGYGPQGMWVPAGQAIGGYGPPPAGRG-APPPPPPF--TSYIVSTP 269


>MGI|MGI:1917498 [details] [associations]
            symbol:Dazap1 "DAZ associated protein 1" species:10090 "Mus
            musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0001893 "maternal placenta development" evidence=IMP]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=ISA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844 "polysome"
            evidence=IDA] [GO:0007275 "multicellular organismal development"
            evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IMP]
            [GO:0008283 "cell proliferation" evidence=IMP] [GO:0030154 "cell
            differentiation" evidence=IEA] [GO:0035613 "RNA stem-loop binding"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 MGI:MGI:1917498 GO:GO:0007275
            GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 eggNOG:COG0724
            CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
            ChiTaRS:DAZAP1 EMBL:AF225910 EMBL:BC049355 IPI:IPI00406492
            IPI:IPI00406493 RefSeq:NP_001116076.1 RefSeq:NP_001116077.1
            RefSeq:NP_573451.2 UniGene:Mm.148693 ProteinModelPortal:Q9JII5
            SMR:Q9JII5 STRING:Q9JII5 PhosphoSite:Q9JII5
            REPRODUCTION-2DPAGE:Q9JII5 PaxDb:Q9JII5 PRIDE:Q9JII5
            Ensembl:ENSMUST00000092305 Ensembl:ENSMUST00000105362 GeneID:70248
            KEGG:mmu:70248 UCSC:uc007gcl.2 UCSC:uc007gcm.2
            GeneTree:ENSGT00700000104255 InParanoid:Q9JII5 NextBio:331250
            Bgee:Q9JII5 CleanEx:MM_DAZAP1 Genevestigator:Q9JII5
            GermOnline:ENSMUSG00000069565 Uniprot:Q9JII5
        Length = 406

 Score = 114 (45.2 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
 Identities = 23/57 (40%), Positives = 36/57 (63%)

Query:    52 GPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFE 108
             G +++ K  L++ GL   TT + L +  SQYG ++    + DKTTN+ RG+GFV F+
Sbjct:     5 GADEIGK--LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFK 59

 Score = 74 (31.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
 Identities = 37/171 (21%), Positives = 63/171 (36%)

Query:   131 RQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRD-NNNTSKGVGFARLESKD 189
             R        +++  +P N  E +L     K+  V    ++ D      +G GF   E + 
Sbjct:   106 RSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQ 165

Query:   190 KCDQMIQLFNGSTLPGSKEPLLVKFADS-GLKKRGAGAGGPNIY--RGPGAEVRLW-GRD 245
               DQ + + +   + G K  + VK A+    K +  G  G + +  R   +    W G+ 
Sbjct:   166 SVDQAVNM-HFHDIMGKK--VEVKRAEPRDSKNQAPGQPGASQWGSRVAPSAANGWAGQP 222

Query:   246 SADSQLAYEHPMTPIPATIQYQRFTAGPGGTGHIPAGYTPWVPTQYVMPAP 296
                 Q  Y      +PA      +   P G G  P    P+  T Y++  P
Sbjct:   223 PPTWQQGYGPQGMWVPAGQAIGGYGPPPAGRG-APPPPPPF--TSYIVSTP 270


>UNIPROTKB|F2Z3S1 [details] [associations]
            symbol:Dazap1 "Protein Dazap1" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1305280 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104255 IPI:IPI00365961
            ProteinModelPortal:F2Z3S1 SMR:F2Z3S1 PRIDE:F2Z3S1
            Ensembl:ENSRNOT00000046886 Uniprot:F2Z3S1
        Length = 406

 Score = 114 (45.2 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
 Identities = 23/57 (40%), Positives = 36/57 (63%)

Query:    52 GPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFE 108
             G +++ K  L++ GL   TT + L +  SQYG ++    + DKTTN+ RG+GFV F+
Sbjct:     5 GADEIGK--LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFK 59

 Score = 74 (31.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
 Identities = 37/171 (21%), Positives = 63/171 (36%)

Query:   131 RQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRD-NNNTSKGVGFARLESKD 189
             R        +++  +P N  E +L     K+  V    ++ D      +G GF   E + 
Sbjct:   106 RSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQ 165

Query:   190 KCDQMIQLFNGSTLPGSKEPLLVKFADS-GLKKRGAGAGGPNIY--RGPGAEVRLW-GRD 245
               DQ + + +   + G K  + VK A+    K +  G  G + +  R   +    W G+ 
Sbjct:   166 SVDQAVNM-HFHDIMGKK--VEVKRAEPRDSKNQAPGQPGASQWGSRVAPSAANGWAGQP 222

Query:   246 SADSQLAYEHPMTPIPATIQYQRFTAGPGGTGHIPAGYTPWVPTQYVMPAP 296
                 Q  Y      +PA      +   P G G  P    P+  T Y++  P
Sbjct:   223 PPTWQQGYGPQGMWVPAGQAIGGYGPPPAGRG-APPPPPPF--TSYIVSTP 270


>TAIR|locus:2046298 [details] [associations]
            symbol:emb2444 "embryo defective 2444" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0009793 "embryo development ending in seed
            dormancy" evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 EMBL:CP002685 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006135 HSSP:P11940
            KO:K12831 EMBL:AY150466 IPI:IPI00516901 PIR:B84565
            RefSeq:NP_179441.1 UniGene:At.20306 ProteinModelPortal:Q9ZU66
            SMR:Q9ZU66 STRING:Q9ZU66 PRIDE:Q9ZU66 EnsemblPlants:AT2G18510.1
            GeneID:816366 KEGG:ath:AT2G18510 TAIR:At2g18510 InParanoid:Q9ZU66
            OMA:FIEYRSE PhylomeDB:Q9ZU66 ProtClustDB:CLSN2683050
            Genevestigator:Q9ZU66 Uniprot:Q9ZU66
        Length = 363

 Score = 145 (56.1 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 65/261 (24%), Positives = 108/261 (41%)

Query:    54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYA 113
             E+     +Y+ GL    +++ L  +  Q GP+++     D+ TN  + YGF+++ S   A
Sbjct:    20 ERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDA 79

Query:   114 LAAVKALQDKGIHAQMAR--QQEQDP------TNLYIANLPLNFKECDLESLLAKYVTVV 165
               A+K L    +H +  R  +  QD        NL+I NL  +  E  L    + +  + 
Sbjct:    80 DYAIKVLNMIKLHGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIA 139

Query:   166 ST-RILRD-NNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRG 223
             S  +I+RD +   S+G GF   +S +  D  I+   G  L  S   + V +A    KK  
Sbjct:   140 SNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYL--SNRQITVSYA---YKKDT 194

Query:   224 AGAGGPNIYRGPGAEVRLWGRDSADSQLAYEHPMTPI--PATIQYQRFTAGPGGTGHIPA 281
              G        G  AE RL    +  +Q +  H +  +  P++         P   G +  
Sbjct:   195 KGER-----HGTPAE-RLLAATNPTAQKSRPHTLFAMGPPSSAPQVNGLPRPFANGSMQP 248

Query:   282 GYTPWVPTQYVMPAPHMSQVE 302
                P  P Q   P P + Q +
Sbjct:   249 VPIP-APRQPPPPPPQVYQTQ 268


>CGD|CAL0005232 [details] [associations]
            symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
            "nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
            [GO:0044011 "single-species biofilm formation on inanimate
            substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0003697 "single-stranded DNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
            eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
            ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
            GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
            Uniprot:Q5AB84
        Length = 400

 Score = 103 (41.3 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
 Identities = 23/65 (35%), Positives = 36/65 (55%)

Query:    61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKAL 120
             L++  L+ +  D  L       G +I  + I+++ T K RGYG+VDFES   A  A++ +
Sbjct:   170 LFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEEM 229

Query:   121 QDKGI 125
             Q K I
Sbjct:   230 QGKEI 234

 Score = 86 (35.3 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
 Identities = 23/91 (25%), Positives = 39/91 (42%)

Query:   116 AVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRI-LRDNN 174
             A K+  D+    Q    Q      L+I NL  N    +L ++  +Y  V+S R+    + 
Sbjct:   250 ASKSNNDRA--KQYGDSQSPPSDTLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDT 307

Query:   175 NTSKGVGFARLESKDKCDQMIQLFNGSTLPG 205
                KG G+ +  S D+    ++  NG  + G
Sbjct:   308 QQPKGFGYVQFSSVDEAKAALEAMNGEYIEG 338


>UNIPROTKB|Q5AB84 [details] [associations]
            symbol:NSR1 "Potential nuclear localization sequence
            binding protein Nsr1p" species:237561 "Candida albicans SC5314"
            [GO:0044011 "single-species biofilm formation on inanimate
            substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
            EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
            RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
            STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
            KEGG:cal:CaO19.6090 Uniprot:Q5AB84
        Length = 400

 Score = 103 (41.3 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
 Identities = 23/65 (35%), Positives = 36/65 (55%)

Query:    61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKAL 120
             L++  L+ +  D  L       G +I  + I+++ T K RGYG+VDFES   A  A++ +
Sbjct:   170 LFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEEM 229

Query:   121 QDKGI 125
             Q K I
Sbjct:   230 QGKEI 234

 Score = 86 (35.3 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
 Identities = 23/91 (25%), Positives = 39/91 (42%)

Query:   116 AVKALQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRI-LRDNN 174
             A K+  D+    Q    Q      L+I NL  N    +L ++  +Y  V+S R+    + 
Sbjct:   250 ASKSNNDRA--KQYGDSQSPPSDTLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDT 307

Query:   175 NTSKGVGFARLESKDKCDQMIQLFNGSTLPG 205
                KG G+ +  S D+    ++  NG  + G
Sbjct:   308 QQPKGFGYVQFSSVDEAKAALEAMNGEYIEG 338


>TAIR|locus:2122009 [details] [associations]
            symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
            evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
            immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
            evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
            [GO:0009073 "aromatic amino acid family biosynthetic process"
            evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
            [GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
            [GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
            "protein targeting to chloroplast" evidence=RCA] [GO:0045893
            "positive regulation of transcription, DNA-dependent" evidence=RCA]
            [GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
            conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
            stabilization" evidence=IMP] [GO:0006396 "RNA processing"
            evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
            GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
            EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
            EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
            IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
            PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
            ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
            PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
            KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
            OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
            Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
            Uniprot:Q04836
        Length = 329

 Score = 144 (55.7 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 45/187 (24%), Positives = 81/187 (43%)

Query:    53 PEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGY 112
             PE   +  L++  L  D   + L  +  Q G +   + I ++ T++ RG+GFV   S   
Sbjct:   144 PEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDE 203

Query:   113 ALAAVKALQDKGIHAQM---------ARQQEQDPT------NLYIANLPLNFKECDLESL 157
             A  AV+      ++ ++           + E+ P        +Y+ NLP +     LE L
Sbjct:   204 AETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQL 263

Query:   158 LAKYVTVVSTRILRDNNN-TSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFAD 216
              +++  VV  R++ D     S+G GF  +   D+ ++ I   +G  L G    + V  A+
Sbjct:   264 FSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEG--RAIRVNVAE 321

Query:   217 SGLKKRG 223
                 +RG
Sbjct:   322 ERPPRRG 328


>UNIPROTKB|P0CB38 [details] [associations]
            symbol:PABPC4L "Polyadenylate-binding protein 4-like"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
            EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
            ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
            DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
            UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
            neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
            Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
        Length = 370

 Score = 145 (56.1 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 42/161 (26%), Positives = 78/161 (48%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I+ L +   +K L    S +G I+S+K + D   +K  GY FV F++   A  A++ 
Sbjct:    99 NVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGSK--GYAFVHFQNQSAADRAIEE 156

Query:   120 LQDK---GIHAQMAR-QQEQDP-----------TNLYIANLPLNFKECDLESLLAKYVTV 164
             +  K   G    + R +  +D            TN+YI N   +  +  L+ + +KY   
Sbjct:   157 MNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKT 216

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPG 205
             +S +++ D++  SKG GF   +S +   + ++  NG  + G
Sbjct:   217 LSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDING 257

 Score = 134 (52.2 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 38/157 (24%), Positives = 72/157 (45%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             +LY+  L  D T+  L    S  GP++S +   D+ T +  GY +V+F     A  A+  
Sbjct:    11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 70

Query:   120 L-----QDKGIHAQMARQ----QEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRIL 170
             +     + K I    +++    +     N++I NL  +     L    + +  ++S++++
Sbjct:    71 MNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVM 130

Query:   171 RDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSK 207
              D+   SKG  F   +++   D+ I+  NG  L G K
Sbjct:   131 SDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCK 166

 Score = 117 (46.2 bits), Expect = 0.00023, P = 0.00023
 Identities = 25/71 (35%), Positives = 43/71 (60%)

Query:    59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVK 118
             TN+YI+    D  D+ L ++ S+YG  +S K + D ++ K +G+GFV F+S   A  AV+
Sbjct:   190 TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVE 248

Query:   119 ALQDKGIHAQM 129
              +  + I+ Q+
Sbjct:   249 EMNGRDINGQL 259


>RGD|1559517 [details] [associations]
            symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
            TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
            CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
            UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
            KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
        Length = 370

 Score = 145 (56.1 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 44/161 (27%), Positives = 79/161 (49%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAV-- 117
             N++I+ L +   +K L    S +G I+S+K + D+  +K  GYGFV ++    A  A+  
Sbjct:    99 NVFIKNLDKSIDNKTLYEHFSPFGKIMSSKVMTDEEGSK--GYGFVHYQDQRAADRAIEE 156

Query:   118 ---KALQDKGIH-----AQMARQQE--QDP---TNLYIANLPLNFKECDLESLLAKYVTV 164
                K L+D  +      ++  R+ E  + P   TN+YI N   +  +  L S+ +KY   
Sbjct:   157 MNGKLLRDSTLFVARFKSRKDREAELREKPAEFTNVYIKNFGDDMDDESLRSVFSKYGQT 216

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPG 205
             +S ++++D +  SK  GF   +S       ++  NG  + G
Sbjct:   217 LSVKVMKDASGKSKRFGFVSFDSHKAAKNAVEDMNGRDING 257

 Score = 136 (52.9 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 38/156 (24%), Positives = 75/156 (48%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             +LY+  L +D T+  L    +  GP++S +   D  +++  GYG+V+F   G A  A++ 
Sbjct:    11 SLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDAQKALET 70

Query:   120 L-----QDKGIHAQMARQ----QEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRIL 170
             +     + K I    +++    ++    N++I NL  +     L    + +  ++S++++
Sbjct:    71 MNFDLIKGKSIRLMWSQRDACLRKSGIGNVFIKNLDKSIDNKTLYEHFSPFGKIMSSKVM 130

Query:   171 RDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGS 206
              D    SKG GF   + +   D+ I+  NG  L  S
Sbjct:   131 TDEEG-SKGYGFVHYQDQRAADRAIEEMNGKLLRDS 165


>UNIPROTKB|C9JTN7 [details] [associations]
            symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
            EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
            ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
            Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
            Uniprot:C9JTN7
        Length = 285

 Score = 142 (55.0 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 43/164 (26%), Positives = 79/164 (48%)

Query:    54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYA 113
             +++ KT LY+  L++D T+  ++ + SQ GP  + K I+D   N    Y FV+F    +A
Sbjct:     3 DEMPKT-LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGND--PYCFVEFHEHRHA 59

Query:   114 LAAVKALQDKGIHAQMAR--------QQEQDPTN---LYIANLPLNFKECDLESLLAKYV 162
              AA+ A+  + I  +  +         Q++D +N   +++ +L       D+++  A + 
Sbjct:    60 AAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFG 119

Query:   163 TVVSTRILRDN-NNTSKGVGFARLESKDKCDQMIQLFNGSTLPG 205
              +   R+++D     SKG GF    +K   +  IQ   G  L G
Sbjct:   120 RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG 163


>UNIPROTKB|F1ST15 [details] [associations]
            symbol:CELF3 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0048026 "positive regulation of mRNA splicing, via
            spliceosome" evidence=IEA] [GO:0030317 "sperm motility"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0007283
            "spermatogenesis" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
            splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0007283 GO:GO:0003723 GO:GO:0030317 GO:GO:0048026
            GeneTree:ENSGT00560000076837 OMA:HSAYLNP GO:GO:0000381
            EMBL:CU457723 Ensembl:ENSSSCT00000007252 Uniprot:F1ST15
        Length = 465

 Score = 146 (56.5 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 46/162 (28%), Positives = 75/162 (46%)

Query:    72 DKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131
             +KDL  +  Q+G I     I DK T   +G  F+ + +   AL A  AL ++     M R
Sbjct:    21 EKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNR 80

Query:   132 QQEQDPTN---------LYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGF 182
               +  P +         L++  L     + D+  +   + T+    +LR  + TSKG  F
Sbjct:    81 PIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAF 140

Query:   183 ARLESKDKCDQMIQLFNGS-TLPGSKEPLLVKFADSGLKKRG 223
              + ++  +    I   + S TLPG+   L+VKFAD+  K+RG
Sbjct:   141 VKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTE-KERG 181

 Score = 126 (49.4 bits), Expect = 3.2e-05, P = 3.2e-05
 Identities = 28/87 (32%), Positives = 50/87 (57%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I  L Q+ TD +++ M   +G +IS K  +D+ TN+ + +GFV F++   A AA++A
Sbjct:   381 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 440

Query:   120 LQDKGIHAQMARQQEQDPTNLYIANLP 146
             +    I  +  + Q + P +   AN P
Sbjct:   441 MNGFQIGMKRLKVQLKRPKD---ANRP 464


>UNIPROTKB|A7MB95 [details] [associations]
            symbol:CUGBP1 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
            [GO:0042835 "BRE binding" evidence=IEA] [GO:0040018 "positive
            regulation of multicellular organism growth" evidence=IEA]
            [GO:0031369 "translation initiation factor binding" evidence=IEA]
            [GO:0007286 "spermatid development" evidence=IEA] [GO:0006376 "mRNA
            splice site selection" evidence=IEA] [GO:0003729 "mRNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0007286 GO:GO:0000166 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484 HOVERGEN:HBG107646
            KO:K13207 CTD:10658 eggNOG:NOG251494 HOGENOM:HOG000004754
            OrthoDB:EOG4N8R4X GO:GO:0042835 GO:GO:0006376
            GeneTree:ENSGT00560000076837 OMA:PTLYNQS EMBL:DAAA02041602
            EMBL:DAAA02041603 EMBL:DAAA02041604 EMBL:BC151433 IPI:IPI00824850
            RefSeq:NP_001094682.1 UniGene:Bt.16531 SMR:A7MB95 STRING:A7MB95
            Ensembl:ENSBTAT00000003274 GeneID:540475 KEGG:bta:540475
            InParanoid:A7MB95 NextBio:20878658 Uniprot:A7MB95
        Length = 486

 Score = 146 (56.5 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 45/188 (23%), Positives = 83/188 (44%)

Query:    44 NGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTN--KCRG 101
             NG+   P  P+ L    +++  + +  ++KDL  +  QYG +     + D++ N  + +G
Sbjct:     2 NGTLDHPDQPD-LDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKG 60

Query:   102 YGFVDFESGGYALAAVKALQDK----GIH-------AQMARQQEQDPTNLYIANLPLNFK 150
               FV F +   AL A  AL +     G+H       A   +    +   L+I  +     
Sbjct:    61 CCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCT 120

Query:   151 ECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQ-LFNGSTLPGSKEP 209
             E D+  + + +  +   RILR  +  S+G  F    ++      I+ +    T+ G   P
Sbjct:   121 ENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSP 180

Query:   210 LLVKFADS 217
             ++VKFAD+
Sbjct:   181 MVVKFADT 188

 Score = 124 (48.7 bits), Expect = 5.6e-05, P = 5.6e-05
 Identities = 32/95 (33%), Positives = 52/95 (54%)

Query:    42 QHNGSPGTPT-GPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCR 100
             Q  G+ G+   GPE     NL+I  L Q+  D+DL+ M   +G ++S K  +DK TN  +
Sbjct:   386 QSIGAAGSQKEGPEG---ANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSK 442

Query:   101 GYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQ 135
              +GFV +++   A AA++++   G    M R + Q
Sbjct:   443 CFGFVSYDNPVSAQAAIQSMN--GFQIGMKRLKVQ 475


>UNIPROTKB|Q92879 [details] [associations]
            symbol:CELF1 "CUGBP Elav-like family member 1" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0007286 "spermatid development" evidence=IEA] [GO:0031369
            "translation initiation factor binding" evidence=IEA] [GO:0040018
            "positive regulation of multicellular organism growth"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376
            "mRNA splice site selection" evidence=ISS] [GO:0005634 "nucleus"
            evidence=NAS] [GO:0042835 "BRE binding" evidence=IDA] [GO:0016246
            "RNA interference" evidence=NAS] [GO:0007281 "germ cell
            development" evidence=NAS] [GO:0009790 "embryo development"
            evidence=NAS] [GO:0030529 "ribonucleoprotein complex" evidence=NAS]
            [GO:0000900 "translation repressor activity, nucleic acid binding"
            evidence=NAS] [GO:0003723 "RNA binding" evidence=IDA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0043484 "regulation of RNA
            splicing" evidence=IDA] [GO:0006397 "mRNA processing" evidence=TAS]
            [GO:0003729 "mRNA binding" evidence=IDA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 EMBL:CH471064 GO:GO:0016246
            GO:GO:0007286 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0040018 GO:GO:0003676 GO:GO:0009790 GO:GO:0030529
            GO:GO:0007281 GO:GO:0043484 GO:GO:0000900 HOVERGEN:HBG107646
            KO:K13207 CTD:10658 eggNOG:NOG251494 HOGENOM:HOG000004754
            OrthoDB:EOG4N8R4X EMBL:U63289 EMBL:AF248648 EMBL:AF267533
            EMBL:AF267534 EMBL:AJ007988 EMBL:AK304430 EMBL:AB210019
            EMBL:AC090559 EMBL:BC031079 IPI:IPI00034015 IPI:IPI00218388
            IPI:IPI00218389 IPI:IPI00853009 IPI:IPI00956101
            RefSeq:NP_001020767.1 RefSeq:NP_001166110.1 RefSeq:NP_001166111.1
            RefSeq:NP_006551.1 RefSeq:NP_941989.1 UniGene:Hs.595333 PDB:2CPZ
            PDB:2DHS PDB:2RQ4 PDB:2RQC PDB:3NMR PDB:3NNA PDB:3NNC PDB:3NNH
            PDBsum:2CPZ PDBsum:2DHS PDBsum:2RQ4 PDBsum:2RQC PDBsum:3NMR
            PDBsum:3NNA PDBsum:3NNC PDBsum:3NNH ProteinModelPortal:Q92879
            SMR:Q92879 IntAct:Q92879 MINT:MINT-1382906 STRING:Q92879
            PhosphoSite:Q92879 DMDM:17374605 PaxDb:Q92879 PRIDE:Q92879
            DNASU:10658 Ensembl:ENST00000310513 Ensembl:ENST00000358597
            Ensembl:ENST00000361904 Ensembl:ENST00000395290
            Ensembl:ENST00000395292 Ensembl:ENST00000532048 GeneID:10658
            KEGG:hsa:10658 UCSC:uc001nfk.2 UCSC:uc001nfl.3 UCSC:uc001nfm.3
            UCSC:uc001nfn.3 GeneCards:GC11M047602 HGNC:HGNC:2549 HPA:CAB016114
            MIM:601074 neXtProt:NX_Q92879 PharmGKB:PA27045 InParanoid:Q92879
            PhylomeDB:Q92879 ChiTaRS:CELF1 EvolutionaryTrace:Q92879
            GenomeRNAi:10658 NextBio:40521 ArrayExpress:Q92879 Bgee:Q92879
            CleanEx:HS_CUGBP1 Genevestigator:Q92879 GermOnline:ENSG00000149187
            GO:GO:0042835 GO:GO:0006376 Uniprot:Q92879
        Length = 486

 Score = 146 (56.5 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 45/188 (23%), Positives = 83/188 (44%)

Query:    44 NGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTN--KCRG 101
             NG+   P  P+ L    +++  + +  ++KDL  +  QYG +     + D++ N  + +G
Sbjct:     2 NGTLDHPDQPD-LDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKG 60

Query:   102 YGFVDFESGGYALAAVKALQDK----GIH-------AQMARQQEQDPTNLYIANLPLNFK 150
               FV F +   AL A  AL +     G+H       A   +    +   L+I  +     
Sbjct:    61 CCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCT 120

Query:   151 ECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQ-LFNGSTLPGSKEP 209
             E D+  + + +  +   RILR  +  S+G  F    ++      I+ +    T+ G   P
Sbjct:   121 ENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSP 180

Query:   210 LLVKFADS 217
             ++VKFAD+
Sbjct:   181 MVVKFADT 188

 Score = 124 (48.7 bits), Expect = 5.6e-05, P = 5.6e-05
 Identities = 32/95 (33%), Positives = 52/95 (54%)

Query:    42 QHNGSPGTPT-GPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCR 100
             Q  G+ G+   GPE     NL+I  L Q+  D+DL+ M   +G ++S K  +DK TN  +
Sbjct:   386 QSIGAAGSQKEGPEG---ANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSK 442

Query:   101 GYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQ 135
              +GFV +++   A AA++++   G    M R + Q
Sbjct:   443 CFGFVSYDNPVSAQAAIQSMN--GFQIGMKRLKVQ 475


>MGI|MGI:1342295 [details] [associations]
            symbol:Celf1 "CUGBP, Elav-like family member 1"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=ISO] [GO:0003729 "mRNA binding"
            evidence=ISO] [GO:0005634 "nucleus" evidence=IDA;TAS] [GO:0005737
            "cytoplasm" evidence=IDA;TAS] [GO:0006376 "mRNA splice site
            selection" evidence=IDA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0007286 "spermatid development" evidence=IMP]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0031369 "translation
            initiation factor binding" evidence=IDA] [GO:0040018 "positive
            regulation of multicellular organism growth" evidence=IMP]
            [GO:0042835 "BRE binding" evidence=ISO] [GO:0043484 "regulation of
            RNA splicing" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1342295
            GO:GO:0005634 GO:GO:0005737 GO:GO:0007286 GO:GO:0000166
            GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484
            EMBL:AL672241 HOVERGEN:HBG107646 KO:K13207 CTD:10658
            eggNOG:NOG251494 ChiTaRS:CELF1 GO:GO:0042835 GO:GO:0006376
            EMBL:AJ007987 EMBL:AF267535 EMBL:AK135030 EMBL:AK143698
            EMBL:AK014492 EMBL:AK156725 EMBL:BC021393 EMBL:AF314172
            EMBL:AB050499 EMBL:X61451 IPI:IPI00123205 IPI:IPI00229237
            IPI:IPI00229238 IPI:IPI00395213 PIR:S16865 RefSeq:NP_001231820.1
            RefSeq:NP_001231832.1 RefSeq:NP_059064.2 RefSeq:NP_941955.1
            UniGene:Mm.29495 UniGene:Mm.490161 ProteinModelPortal:P28659
            SMR:P28659 STRING:P28659 PhosphoSite:P28659 PaxDb:P28659
            PRIDE:P28659 Ensembl:ENSMUST00000005643 Ensembl:ENSMUST00000068726
            Ensembl:ENSMUST00000068747 Ensembl:ENSMUST00000111448
            Ensembl:ENSMUST00000111449 Ensembl:ENSMUST00000111451
            Ensembl:ENSMUST00000111452 Ensembl:ENSMUST00000111455
            Ensembl:ENSMUST00000177642 GeneID:13046 KEGG:mmu:13046
            UCSC:uc008ktx.1 GeneTree:ENSGT00560000076837 InParanoid:P28659
            OMA:PTLYNQS NextBio:282946 Bgee:P28659 CleanEx:MM_CUGBP1
            Genevestigator:P28659 GermOnline:ENSMUSG00000005506 GO:GO:0031369
            Uniprot:P28659
        Length = 486

 Score = 146 (56.5 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 45/188 (23%), Positives = 83/188 (44%)

Query:    44 NGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTN--KCRG 101
             NG+   P  P+ L    +++  + +  ++KDL  +  QYG +     + D++ N  + +G
Sbjct:     2 NGTLDHPDQPD-LDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKG 60

Query:   102 YGFVDFESGGYALAAVKALQDK----GIH-------AQMARQQEQDPTNLYIANLPLNFK 150
               FV F +   AL A  AL +     G+H       A   +    +   L+I  +     
Sbjct:    61 CCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCT 120

Query:   151 ECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQ-LFNGSTLPGSKEP 209
             E D+  + + +  +   RILR  +  S+G  F    ++      I+ +    T+ G   P
Sbjct:   121 ENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEGCSSP 180

Query:   210 LLVKFADS 217
             ++VKFAD+
Sbjct:   181 MVVKFADT 188

 Score = 124 (48.7 bits), Expect = 5.6e-05, P = 5.6e-05
 Identities = 32/95 (33%), Positives = 52/95 (54%)

Query:    42 QHNGSPGTPT-GPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCR 100
             Q  G+ G+   GPE     NL+I  L Q+  D+DL+ M   +G ++S K  +DK TN  +
Sbjct:   386 QSIGAAGSQKEGPEG---ANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSK 442

Query:   101 GYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQ 135
              +GFV +++   A AA++++   G    M R + Q
Sbjct:   443 CFGFVSYDNPVSAQAAIQSMN--GFQIGMKRLKVQ 475


>RGD|1307721 [details] [associations]
            symbol:Celf1 "CUGBP, Elav-like family member 1" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=ISO;ISS] [GO:0003729 "mRNA binding"
            evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
            [GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0006376 "mRNA splice
            site selection" evidence=IEA;ISO] [GO:0007286 "spermatid
            development" evidence=IEA;ISO] [GO:0031369 "translation initiation
            factor binding" evidence=IEA;ISO] [GO:0040018 "positive regulation
            of multicellular organism growth" evidence=IEA;ISO] [GO:0042835
            "BRE binding" evidence=IEA;ISO] [GO:0043484 "regulation of RNA
            splicing" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1307721
            GO:GO:0005634 GO:GO:0005737 GO:GO:0007286 GO:GO:0000166
            GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0003723
            GO:GO:0043484 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658
            eggNOG:NOG251494 HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X
            GO:GO:0042835 GO:GO:0006376 EMBL:BC098012 IPI:IPI00373642
            RefSeq:NP_001020592.1 UniGene:Rn.22432 ProteinModelPortal:Q4QQT3
            SMR:Q4QQT3 STRING:Q4QQT3 PhosphoSite:Q4QQT3 PRIDE:Q4QQT3
            GeneID:362160 KEGG:rno:362160 UCSC:RGD:1307721 InParanoid:Q4QQT3
            NextBio:678844 Genevestigator:Q4QQT3 Uniprot:Q4QQT3
        Length = 487

 Score = 146 (56.5 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 45/188 (23%), Positives = 83/188 (44%)

Query:    44 NGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTN--KCRG 101
             NG+   P  P+ L    +++  + +  ++KDL  +  QYG +     + D++ N  + +G
Sbjct:     2 NGTLDHPDQPD-LDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKG 60

Query:   102 YGFVDFESGGYALAAVKALQDK----GIH-------AQMARQQEQDPTNLYIANLPLNFK 150
               FV F +   AL A  AL +     G+H       A   +    +   L+I  +     
Sbjct:    61 CCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCT 120

Query:   151 ECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQ-LFNGSTLPGSKEP 209
             E D+  + + +  +   RILR  +  S+G  F    ++      I+ +    T+ G   P
Sbjct:   121 ENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEGCSSP 180

Query:   210 LLVKFADS 217
             ++VKFAD+
Sbjct:   181 MVVKFADT 188

 Score = 124 (48.7 bits), Expect = 5.7e-05, P = 5.7e-05
 Identities = 32/95 (33%), Positives = 52/95 (54%)

Query:    42 QHNGSPGTPT-GPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCR 100
             Q  G+ G+   GPE     NL+I  L Q+  D+DL+ M   +G ++S K  +DK TN  +
Sbjct:   387 QSIGAAGSQKEGPEG---ANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSK 443

Query:   101 GYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQ 135
              +GFV +++   A AA++++   G    M R + Q
Sbjct:   444 CFGFVSYDNPVSAQAAIQSMN--GFQIGMKRLKVQ 476


>UNIPROTKB|Q4QQT3 [details] [associations]
            symbol:Celf1 "CUGBP Elav-like family member 1"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:1307721 GO:GO:0005634
            GO:GO:0005737 GO:GO:0007286 GO:GO:0000166 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0003723 GO:GO:0043484
            HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658 eggNOG:NOG251494
            HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X GO:GO:0042835 GO:GO:0006376
            EMBL:BC098012 IPI:IPI00373642 RefSeq:NP_001020592.1
            UniGene:Rn.22432 ProteinModelPortal:Q4QQT3 SMR:Q4QQT3 STRING:Q4QQT3
            PhosphoSite:Q4QQT3 PRIDE:Q4QQT3 GeneID:362160 KEGG:rno:362160
            UCSC:RGD:1307721 InParanoid:Q4QQT3 NextBio:678844
            Genevestigator:Q4QQT3 Uniprot:Q4QQT3
        Length = 487

 Score = 146 (56.5 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 45/188 (23%), Positives = 83/188 (44%)

Query:    44 NGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTN--KCRG 101
             NG+   P  P+ L    +++  + +  ++KDL  +  QYG +     + D++ N  + +G
Sbjct:     2 NGTLDHPDQPD-LDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKG 60

Query:   102 YGFVDFESGGYALAAVKALQDK----GIH-------AQMARQQEQDPTNLYIANLPLNFK 150
               FV F +   AL A  AL +     G+H       A   +    +   L+I  +     
Sbjct:    61 CCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCT 120

Query:   151 ECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQ-LFNGSTLPGSKEP 209
             E D+  + + +  +   RILR  +  S+G  F    ++      I+ +    T+ G   P
Sbjct:   121 ENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEGCSSP 180

Query:   210 LLVKFADS 217
             ++VKFAD+
Sbjct:   181 MVVKFADT 188

 Score = 124 (48.7 bits), Expect = 5.7e-05, P = 5.7e-05
 Identities = 32/95 (33%), Positives = 52/95 (54%)

Query:    42 QHNGSPGTPT-GPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCR 100
             Q  G+ G+   GPE     NL+I  L Q+  D+DL+ M   +G ++S K  +DK TN  +
Sbjct:   387 QSIGAAGSQKEGPEG---ANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSK 443

Query:   101 GYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQ 135
              +GFV +++   A AA++++   G    M R + Q
Sbjct:   444 CFGFVSYDNPVSAQAAIQSMN--GFQIGMKRLKVQ 476


>UNIPROTKB|J3KTH5 [details] [associations]
            symbol:PABPC4L "Polyadenylate-binding protein 4-like"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
            EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
            RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
            Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
            Uniprot:J3KTH5
        Length = 428

 Score = 145 (56.1 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 42/161 (26%), Positives = 78/161 (48%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I+ L +   +K L    S +G I+S+K + D   +K  GY FV F++   A  A++ 
Sbjct:   157 NVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGSK--GYAFVHFQNQSAADRAIEE 214

Query:   120 LQDK---GIHAQMAR-QQEQDP-----------TNLYIANLPLNFKECDLESLLAKYVTV 164
             +  K   G    + R +  +D            TN+YI N   +  +  L+ + +KY   
Sbjct:   215 MNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKT 274

Query:   165 VSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPG 205
             +S +++ D++  SKG GF   +S +   + ++  NG  + G
Sbjct:   275 LSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDING 315

 Score = 136 (52.9 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 40/174 (22%), Positives = 76/174 (43%)

Query:    43 HNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGY 102
             H+G         +    +LY+  L  D T+  L    S  GP++S +   D+ T +  GY
Sbjct:    52 HSGKDKEMNVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGY 111

Query:   103 GFVDFESGGYALAAVKAL-----QDKGIHAQMARQ----QEQDPTNLYIANLPLNFKECD 153
              +V+F     A  A+  +     + K I    +++    +     N++I NL  +     
Sbjct:   112 AYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKT 171

Query:   154 LESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSK 207
             L    + +  ++S++++ D+   SKG  F   +++   D+ I+  NG  L G K
Sbjct:   172 LYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCK 224

 Score = 117 (46.2 bits), Expect = 0.00029, P = 0.00029
 Identities = 25/71 (35%), Positives = 43/71 (60%)

Query:    59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVK 118
             TN+YI+    D  D+ L ++ S+YG  +S K + D ++ K +G+GFV F+S   A  AV+
Sbjct:   248 TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVE 306

Query:   119 ALQDKGIHAQM 129
              +  + I+ Q+
Sbjct:   307 EMNGRDINGQL 317


>UNIPROTKB|F1NBB6 [details] [associations]
            symbol:LOC100859627 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
            Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
            EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
            EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
            IPI:IPI00818847 Ensembl:ENSGALT00000029498 Uniprot:F1NBB6
        Length = 310

 Score = 138 (53.6 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
 Identities = 55/216 (25%), Positives = 94/216 (43%)

Query:    40 NVQHNGSPG-TPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNK 98
             N +  G  G  P  PEQL K  L+I GL+ +TTD  L     ++G +     + D  T +
Sbjct:     3 NRRRKGKVGHEPKEPEQLRK--LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKR 60

Query:    99 CRGYGFVDFESGGYALAAVKALQDK--G--IHAQMA--RQQEQDP------TNLYIANLP 146
              RG+GFV +       AA+ A   K  G  +  + A  R+    P        +++  + 
Sbjct:    61 SRGFGFVTYSCVEEVDAAMSARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIK 120

Query:   147 LNFKECDLESLLAKYVTVVSTRILRDNNNTSK-GVGFARLESKDKCDQMI-QLFNGSTLP 204
              + +E +L     KY  + +  ++ D  +  K G  F   +  D  D+++ Q ++  T+ 
Sbjct:   121 EDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYH--TIN 178

Query:   205 GS----KEPLLVKFADSGLKKRGAGAGGPNIYRGPG 236
             G     K+ L  +   +   +RG G G  N + G G
Sbjct:   179 GHNCEVKKALSKQEMQTASSQRGRGGGSGN-FMGRG 213

 Score = 40 (19.1 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
 Identities = 8/14 (57%), Positives = 8/14 (57%)

Query:   223 GAGAGGPNIYRGPG 236
             G G GGP  Y  PG
Sbjct:   218 GGGGGGPG-YGNPG 230


>UNIPROTKB|E2R8F6 [details] [associations]
            symbol:CELF1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0043484 "regulation of RNA splicing"
            evidence=IEA] [GO:0042835 "BRE binding" evidence=IEA] [GO:0040018
            "positive regulation of multicellular organism growth"
            evidence=IEA] [GO:0031369 "translation initiation factor binding"
            evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
            [GO:0006376 "mRNA splice site selection" evidence=IEA] [GO:0003729
            "mRNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0007286 GO:GO:0000166
            GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484
            GO:GO:0042835 GO:GO:0006376 GeneTree:ENSGT00560000076837
            OMA:PTLYNQS EMBL:AAEX03011483 ProteinModelPortal:E2R8F6
            Ensembl:ENSCAFT00000013438 Uniprot:E2R8F6
        Length = 513

 Score = 146 (56.5 bits), Expect = 1.9e-07, P = 1.9e-07
 Identities = 45/188 (23%), Positives = 83/188 (44%)

Query:    44 NGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTN--KCRG 101
             NG+   P  P+ L    +++  + +  ++KDL  +  QYG +     + D++ N  + +G
Sbjct:    29 NGTLDHPDQPD-LDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKG 87

Query:   102 YGFVDFESGGYALAAVKALQDK----GIH-------AQMARQQEQDPTNLYIANLPLNFK 150
               FV F +   AL A  AL +     G+H       A   +    +   L+I  +     
Sbjct:    88 CCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCT 147

Query:   151 ECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQ-LFNGSTLPGSKEP 209
             E D+  + + +  +   RILR  +  S+G  F    ++      I+ +    T+ G   P
Sbjct:   148 ENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSP 207

Query:   210 LLVKFADS 217
             ++VKFAD+
Sbjct:   208 MVVKFADT 215

 Score = 124 (48.7 bits), Expect = 6.1e-05, P = 6.1e-05
 Identities = 32/95 (33%), Positives = 52/95 (54%)

Query:    42 QHNGSPGTPT-GPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCR 100
             Q  G+ G+   GPE     NL+I  L Q+  D+DL+ M   +G ++S K  +DK TN  +
Sbjct:   413 QSIGAAGSQKEGPEG---ANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSK 469

Query:   101 GYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQ 135
              +GFV +++   A AA++++   G    M R + Q
Sbjct:   470 CFGFVSYDNPVSAQAAIQSMN--GFQIGMKRLKVQ 502


>UNIPROTKB|G5EA30 [details] [associations]
            symbol:CELF1 "CUG triplet repeat, RNA binding protein 1,
            isoform CRA_c" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:CH471064 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC090559 UniGene:Hs.595333
            HGNC:HGNC:2549 ChiTaRS:CELF1 OMA:PTLYNQS ProteinModelPortal:G5EA30
            SMR:G5EA30 PRIDE:G5EA30 Ensembl:ENST00000531165 ArrayExpress:G5EA30
            Bgee:G5EA30 Uniprot:G5EA30
        Length = 514

 Score = 146 (56.5 bits), Expect = 1.9e-07, P = 1.9e-07
 Identities = 45/188 (23%), Positives = 83/188 (44%)

Query:    44 NGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTN--KCRG 101
             NG+   P  P+ L    +++  + +  ++KDL  +  QYG +     + D++ N  + +G
Sbjct:    29 NGTLDHPDQPD-LDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKG 87

Query:   102 YGFVDFESGGYALAAVKALQDK----GIH-------AQMARQQEQDPTNLYIANLPLNFK 150
               FV F +   AL A  AL +     G+H       A   +    +   L+I  +     
Sbjct:    88 CCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCT 147

Query:   151 ECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQ-LFNGSTLPGSKEP 209
             E D+  + + +  +   RILR  +  S+G  F    ++      I+ +    T+ G   P
Sbjct:   148 ENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSP 207

Query:   210 LLVKFADS 217
             ++VKFAD+
Sbjct:   208 MVVKFADT 215

 Score = 124 (48.7 bits), Expect = 6.1e-05, P = 6.1e-05
 Identities = 32/95 (33%), Positives = 52/95 (54%)

Query:    42 QHNGSPGTPT-GPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCR 100
             Q  G+ G+   GPE     NL+I  L Q+  D+DL+ M   +G ++S K  +DK TN  +
Sbjct:   414 QSIGAAGSQKEGPEG---ANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSK 470

Query:   101 GYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQ 135
              +GFV +++   A AA++++   G    M R + Q
Sbjct:   471 CFGFVSYDNPVSAQAAIQSMN--GFQIGMKRLKVQ 503


>UNIPROTKB|E7ERJ7 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
            ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
            Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
            Bgee:E7ERJ7 Uniprot:E7ERJ7
        Length = 604

 Score = 120 (47.3 bits), Expect = 0.00022, P = 0.00022
 Identities = 39/146 (26%), Positives = 68/146 (46%)

Query:    78 MCSQYGPIISTKAIL-DKTTNKCRGYGFVDFESGGYALAAVKA-----LQDKGIH----- 126
             M SQ  P +    ++ D+  N  +GYGFV FE+   A  A++      L D+ +      
Sbjct:    85 MWSQRDPSLRKSGVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 142

Query:   127 AQMARQQE-----QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVG 181
             ++  R+ E     ++ TN+YI N   +  +  L+ L  K+   +S +++ D +  SKG G
Sbjct:   143 SRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFG 202

Query:   182 FARLESKDKCDQMIQLFNGSTLPGSK 207
             F   E  +   + +   NG  L G +
Sbjct:   203 FVSFERHEDAQKAVDEMNGKELNGKQ 228

 Score = 114 (45.2 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
 Identities = 29/87 (33%), Positives = 48/87 (55%)

Query:    59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAV- 117
             TN+YI+   +D  D+ L ++  ++GP +S K + D++  K +G+GFV FE    A  AV 
Sbjct:   159 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVD 217

Query:   118 ----KALQDKGIHAQMARQQEQDPTNL 140
                 K L  K I+   A+++ +  T L
Sbjct:   218 EMNGKELNGKQIYVGRAQKKVERQTEL 244

 Score = 90 (36.7 bits), Expect = 0.00010, Sum P(2) = 0.00010
 Identities = 26/95 (27%), Positives = 43/95 (45%)

Query:    46 SPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFV 105
             +P  P+ P      +LY+  L  D T+  L    S  GPI+S +   D  T +  GY +V
Sbjct:     2 NPSAPSYP----MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYV 57

Query:   106 DFESGGYALAAVKALQDKGIHAQMAR--QQEQDPT 138
             +F+    A  A+  +    I  +  R    ++DP+
Sbjct:    58 NFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPS 92

 Score = 77 (32.2 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
 Identities = 27/102 (26%), Positives = 44/102 (43%)

Query:   139 NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLF 198
             NLY+ NL     +  L    + + T+ S +++ +    SKG GF    S ++  + +   
Sbjct:   263 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGR-SKGFGFVCFSSPEEATKAVTEM 321

Query:   199 NGSTLPGSKEPLLVKFADSGLKKRGAGAGGPNIYRGPGAEVR 240
             NG  +  + +PL V  A    +K    A   N Y    A VR
Sbjct:   322 NGRIV--ATKPLYVALAQ---RKEERQAHLTNQYMQRMASVR 358


>UNIPROTKB|E2RGA8 [details] [associations]
            symbol:CELF3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00560000076837 OMA:HSAYLNP EMBL:AAEX03011056
            Ensembl:ENSCAFT00000020318 Uniprot:E2RGA8
        Length = 539

 Score = 146 (56.5 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 46/162 (28%), Positives = 75/162 (46%)

Query:    72 DKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMAR 131
             +KDL  +  Q+G I     I DK T   +G  F+ + +   AL A  AL ++     M R
Sbjct:    97 EKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNR 156

Query:   132 QQEQDPTN---------LYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGF 182
               +  P +         L++  L     + D+  +   + T+    +LR  + TSKG  F
Sbjct:   157 PIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAF 216

Query:   183 ARLESKDKCDQMIQLFNGS-TLPGSKEPLLVKFADSGLKKRG 223
              + ++  +    I   + S TLPG+   L+VKFAD+  K+RG
Sbjct:   217 VKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTE-KERG 257

 Score = 126 (49.4 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 28/87 (32%), Positives = 50/87 (57%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             N++I  L Q+ TD +++ M   +G +IS K  +D+ TN+ + +GFV F++   A AA++A
Sbjct:   455 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 514

Query:   120 LQDKGIHAQMARQQEQDPTNLYIANLP 146
             +    I  +  + Q + P +   AN P
Sbjct:   515 MNGFQIGMKRLKVQLKRPKD---ANRP 538


>FB|FBgn0000114 [details] [associations]
            symbol:aret "arrest" species:7227 "Drosophila melanogaster"
            [GO:0048477 "oogenesis" evidence=IMP] [GO:0007286 "spermatid
            development" evidence=IMP] [GO:0007319 "negative regulation of
            oskar mRNA translation" evidence=IDA;NAS;TAS] [GO:0003729 "mRNA
            binding" evidence=ISS;NAS;TAS] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0030727 "germarium-derived female germ-line cyst
            formation" evidence=TAS] [GO:0042078 "germ-line stem cell division"
            evidence=NAS] [GO:0046011 "regulation of oskar mRNA translation"
            evidence=TAS] [GO:0006378 "mRNA polyadenylation" evidence=TAS]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0017148
            "negative regulation of translation" evidence=IMP] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0043186 "P granule"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IC] [GO:0000381
            "regulation of alternative mRNA splicing, via spliceosome"
            evidence=IMP] [GO:0003723 "RNA binding" evidence=IDA] [GO:0007281
            "germ cell development" evidence=IMP] [GO:0031536 "positive
            regulation of exit from mitosis" evidence=IMP] [GO:0002121
            "inter-male aggressive behavior" evidence=IMP] [GO:0007476
            "imaginal disc-derived wing morphogenesis" evidence=IMP]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 EMBL:AE014134 GO:GO:0007286
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
            GO:GO:0002121 HSSP:P19339 GO:GO:0007476 GO:GO:0030727 GO:GO:0007319
            GO:GO:0031536 GO:GO:0042078 GeneTree:ENSGT00560000076837
            GO:GO:0000381 GO:GO:0043186 FlyBase:FBgn0000114 UniGene:Dm.4487
            GeneID:34648 KEGG:dme:Dmel_CG31762 CTD:34648 KO:K02177
            GenomeRNAi:34648 NextBio:789496 EMBL:BT133212 RefSeq:NP_723737.1
            SMR:Q8IP90 MINT:MINT-1597685 STRING:Q8IP90
            EnsemblMetazoa:FBtr0080344 EnsemblMetazoa:FBtr0331645
            UCSC:CG31762-RB InParanoid:Q8IP90 OMA:ASAYMST Uniprot:Q8IP90
        Length = 810

 Score = 148 (57.2 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 46/171 (26%), Positives = 75/171 (43%)

Query:    61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKAL 120
             +++  + +   +  L  M  +YG + S   + DK T   +G  FV F +   AL A  AL
Sbjct:   359 MFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRHAALKAQDAL 418

Query:   121 QD----KGIH--AQM--ARQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRD 172
              +     G++   QM  A  + ++   L++  L     E D+  L   +  +    +LRD
Sbjct:   419 HNVKTLNGMYHPIQMKPADSENRNERKLFVGMLNKKLNENDVRKLFEVHGAIEECTVLRD 478

Query:   173 NNNTSKGVGFARLESKDKCDQMIQ--LFNGSTLPGSKEPLLVKFADSGLKK 221
              N  SKG  F    +K      I+  L     + G   PL+VKFAD+  +K
Sbjct:   479 QNGQSKGCAFVTFATKHAAISAIKVTLSQNKIMEGCTSPLVVKFADTQKEK 529

 Score = 120 (47.3 bits), Expect = 0.00032, P = 0.00032
 Identities = 29/86 (33%), Positives = 46/86 (53%)

Query:    52 GPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGG 111
             GPE     NL+I  L Q+ TD DL +    +G +IS K  +DK T+  + +GFV F++  
Sbjct:   722 GPEGC---NLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPD 778

Query:   112 YALAAVKALQDKGIHAQMARQQEQDP 137
              A  A+KA+    +  +  + Q + P
Sbjct:   779 SAQVAIKAMNGFQVGTKRLKVQLKKP 804


>UNIPROTKB|F1ND14 [details] [associations]
            symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0040018 "positive regulation of multicellular organism growth"
            evidence=IEA] [GO:0042835 "BRE binding" evidence=IEA] [GO:0043484
            "regulation of RNA splicing" evidence=IEA] [GO:0003729 "mRNA
            binding" evidence=IEA] [GO:0006376 "mRNA splice site selection"
            evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
            [GO:0031369 "translation initiation factor binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0040018 GO:GO:0043484 IPI:IPI00854332 GO:GO:0042835
            GO:GO:0006376 GeneTree:ENSGT00560000076837 OMA:PTLYNQS
            EMBL:AADN02033464 Ensembl:ENSGALT00000013143
            Ensembl:ENSGALT00000038511 Uniprot:F1ND14
        Length = 485

 Score = 145 (56.1 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 45/188 (23%), Positives = 82/188 (43%)

Query:    44 NGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTN--KCRG 101
             NG+   P  P+ L    +++  + +   +KDL  +  QYG +     + D++ N  + +G
Sbjct:     2 NGTLDHPDQPD-LDAIKMFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKG 60

Query:   102 YGFVDFESGGYALAAVKALQDK----GIH-------AQMARQQEQDPTNLYIANLPLNFK 150
               FV F +   AL A  AL +     G+H       A   +    +   L+I  +     
Sbjct:    61 CCFVTFYTRKAALEAQNALHNMKILPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCN 120

Query:   151 ECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQ-LFNGSTLPGSKEP 209
             E D+  + + +  +   RILR  +  S+G  F    ++      I+ +    T+ G   P
Sbjct:   121 ENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSP 180

Query:   210 LLVKFADS 217
             ++VKFAD+
Sbjct:   181 IVVKFADT 188

 Score = 124 (48.7 bits), Expect = 5.6e-05, P = 5.6e-05
 Identities = 32/95 (33%), Positives = 52/95 (54%)

Query:    42 QHNGSPGTPT-GPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCR 100
             Q  G+ G+   GPE     NL+I  L Q+  D+DL+ M   +G ++S K  +DK TN  +
Sbjct:   385 QSIGAAGSQKEGPEG---ANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSK 441

Query:   101 GYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQ 135
              +GFV +++   A AA++++   G    M R + Q
Sbjct:   442 CFGFVSYDNPVSAQAAIQSMN--GFQIGMKRLKVQ 474


>UNIPROTKB|Q98SJ2 [details] [associations]
            symbol:dazap1 "DAZ-associated protein 1" species:8355
            "Xenopus laevis" [GO:0003723 "RNA binding" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0030154
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0003723
            CTD:26528 HOVERGEN:HBG002295 KO:K14411 EMBL:AY028920
            RefSeq:NP_001082088.1 UniGene:Xl.1666 ProteinModelPortal:Q98SJ2
            SMR:Q98SJ2 GeneID:398218 KEGG:xla:398218 Xenbase:XB-GENE-864805
            Uniprot:Q98SJ2
        Length = 360

 Score = 113 (44.8 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
 Identities = 23/57 (40%), Positives = 36/57 (63%)

Query:    52 GPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFE 108
             G +++ K  L++ GL   TT + L +  SQYG ++    + DKTTN+ RG+GFV F+
Sbjct:     5 GGDEIGK--LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFK 59

 Score = 71 (30.1 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
 Identities = 37/180 (20%), Positives = 67/180 (37%)

Query:   123 KGIHAQMARQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRD-NNNTSKGVG 181
             +G   +  R +      +++  +P N  E +L+    ++  V    ++ D      +G G
Sbjct:    99 EGWQQKEPRTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFG 158

Query:   182 FARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADS-GLKKRGAGAGGPNIY--RGPGAE 238
             F   E +   DQ + + +   + G K  + VK A+    K +  G  G N +  R   + 
Sbjct:   159 FITFEDEQSVDQAVNM-HFHDIMGKK--VEVKRAEPRDSKSQTPGPPGSNQWGSRAMQST 215

Query:   239 VRLWGRDSADSQLAY--EHPMTPIPATIQYQRFTAGPGGTGHIPAGYTPWVPTQYVMPAP 296
                W      +   Y  +    P   TI      AG GG    P  + P++ +    P P
Sbjct:   216 ANGWTGQPPQTWQGYSPQGMWMPTGQTIGGYGQPAGRGGPPP-PPSFAPFLVSTTPGPFP 274


>UNIPROTKB|Q5F3T7 [details] [associations]
            symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
            GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207
            EMBL:AJ851563 EMBL:AB050497 IPI:IPI00581213 IPI:IPI00854332
            RefSeq:NP_001012539.1 UniGene:Gga.14943 UniGene:Gga.56092
            ProteinModelPortal:Q5F3T7 SMR:Q5F3T7 STRING:Q5F3T7 PRIDE:Q5F3T7
            GeneID:373923 KEGG:gga:373923 CTD:10658 eggNOG:NOG251494
            HOGENOM:HOG000004754 InParanoid:Q5F3T7 OrthoDB:EOG4N8R4X
            NextBio:20813455 Uniprot:Q5F3T7
        Length = 489

 Score = 145 (56.1 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 45/188 (23%), Positives = 82/188 (43%)

Query:    44 NGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTN--KCRG 101
             NG+   P  P+ L    +++  + +   +KDL  +  QYG +     + D++ N  + +G
Sbjct:     2 NGTLDHPDQPD-LDAIKMFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKG 60

Query:   102 YGFVDFESGGYALAAVKALQDK----GIH-------AQMARQQEQDPTNLYIANLPLNFK 150
               FV F +   AL A  AL +     G+H       A   +    +   L+I  +     
Sbjct:    61 CCFVTFYTRKAALEAQNALHNMKILPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCN 120

Query:   151 ECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQ-LFNGSTLPGSKEP 209
             E D+  + + +  +   RILR  +  S+G  F    ++      I+ +    T+ G   P
Sbjct:   121 ENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSP 180

Query:   210 LLVKFADS 217
             ++VKFAD+
Sbjct:   181 IVVKFADT 188

 Score = 124 (48.7 bits), Expect = 5.7e-05, P = 5.7e-05
 Identities = 32/95 (33%), Positives = 52/95 (54%)

Query:    42 QHNGSPGTPT-GPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCR 100
             Q  G+ G+   GPE     NL+I  L Q+  D+DL+ M   +G ++S K  +DK TN  +
Sbjct:   389 QSIGAAGSQKEGPEG---ANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSK 445

Query:   101 GYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQ 135
              +GFV +++   A AA++++   G    M R + Q
Sbjct:   446 CFGFVSYDNPVSAQAAIQSMN--GFQIGMKRLKVQ 478


>DICTYBASE|DDB_G0292472 [details] [associations]
            symbol:DDB_G0292472 species:44689 "Dictyostelium
            discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            dictyBase:DDB_G0292472 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AAFI02000190 eggNOG:NOG321849 RefSeq:XP_629639.1
            ProteinModelPortal:Q54D57 EnsemblProtists:DDB0184418 GeneID:8628703
            KEGG:ddi:DDB_G0292472 InParanoid:Q54D57 OMA:ANINFAF Uniprot:Q54D57
        Length = 550

 Score = 138 (53.6 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
 Identities = 40/147 (27%), Positives = 62/147 (42%)

Query:    93 DKTTNKCRGYGFVDFESGGYALAAVKALQ-----DKGIHAQMARQQEQDPT--NLYIANL 145
             +   N   GYGFV F     A  A++ L       K +    A+      T  NLYI  L
Sbjct:   145 NSNNNSSLGYGFVKFSKKDEAAMAIEQLNGFEVDSKPLKVSYAQASSSQSTHANLYINRL 204

Query:   146 PLNFKECDLESLLAKYVTVVSTRILRD-NNNTSKGVGFARLESKDKCDQMIQLFNGSTLP 204
               +    +L+ +   +  V+ T+IL D +   S+ VGF     + +  + +   NG+ +P
Sbjct:   205 EPHVTNANLKEVFGSFGDVIDTKILTDPDTGASRCVGFVHFSQRREALKAVSSMNGANIP 264

Query:   205 GSKEPLLVKFADSGLKKRGAGAGGPNI 231
                 P+ VKFA+  L     G    NI
Sbjct:   265 FQSTPIYVKFANQ-LSGNNNGNNNNNI 290

 Score = 48 (22.0 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
 Identities = 12/56 (21%), Positives = 26/56 (46%)

Query:    39 NNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDK 94
             NN  +N        P+  + TNL +  + +     +L ++  ++G I S K + ++
Sbjct:    62 NNENNNEFIEDLQDPDLDALTNLIVNNIPKSMDSNELKSLFDKFGEIESCKIVFNR 117


>UNIPROTKB|Q5JQF8 [details] [associations]
            symbol:PABPC1L2A "Polyadenylate-binding protein 1-like 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:CH471104 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
            HOGENOM:HOG000217922 HSSP:P11940 EMBL:AL662864 EMBL:BC041956
            EMBL:BC136492 IPI:IPI00217142 RefSeq:NP_001012995.1
            RefSeq:NP_001035971.1 UniGene:Hs.450320 UniGene:Hs.567854
            ProteinModelPortal:Q5JQF8 SMR:Q5JQF8 PhosphoSite:Q5JQF8
            PaxDb:Q5JQF8 PRIDE:Q5JQF8 Ensembl:ENST00000373519
            Ensembl:ENST00000373521 Ensembl:ENST00000453389
            Ensembl:ENST00000538388 GeneID:340529 GeneID:645974 KEGG:hsa:340529
            KEGG:hsa:645974 UCSC:uc004ebf.3 CTD:340529 CTD:645974
            GeneCards:GC0XM072297 GeneCards:GC0XP072223 H-InvDB:HIX0056425
            HGNC:HGNC:27989 HGNC:HGNC:31852 HPA:HPA041573 neXtProt:NX_Q5JQF8
            PharmGKB:PA162398594 InParanoid:Q5JQF8 OMA:RIMYSHC
            OrthoDB:EOG4QVCCZ NextBio:97904 Bgee:Q5JQF8 CleanEx:HS_PABPC1L2A
            CleanEx:HS_PABPC1L2B Genevestigator:Q5JQF8 Uniprot:Q5JQF8
        Length = 200

 Score = 134 (52.2 bits), Expect = 2.5e-07, P = 2.5e-07
 Identities = 38/153 (24%), Positives = 71/153 (46%)

Query:    60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
             +LY+  L  + T+  L    S  GPI+S +   DK T +  GY +V+++    A  A++ 
Sbjct:     3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62

Query:   120 LQDKGIHAQMAR--QQEQDPT-------NLYIANLPLNFKECDLESLLAKYVTVVSTRIL 170
             L    I  +  R    ++DP+       N++I NL        L ++ + +  ++S ++ 
Sbjct:    63 LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122

Query:   171 RDNNNTSKGVGFARLESKDKCDQMIQLFNGSTL 203
              D     KG GF   + ++  ++ I + NG  L
Sbjct:   123 CDEKGP-KGYGFVHFQKQESAERAIDVMNGMFL 154

WARNING:  HSPs involving 396 database sequences were not reported due to the
          limiting value of parameter B = 250.


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.134   0.402    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      305       280   0.00082  115 3  11 22  0.40    34
                                                     33  0.41    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  646
  No. of states in DFA:  597 (63 KB)
  Total size of DFA:  198 KB (2112 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.78u 0.11s 24.89t   Elapsed:  00:00:03
  Total cpu time:  24.84u 0.11s 24.95t   Elapsed:  00:00:03
  Start:  Thu Aug 15 17:17:47 2013   End:  Thu Aug 15 17:17:50 2013
WARNINGS ISSUED:  2
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with shep shep shep Protein alan shepard	protein from Drosophila willistoni	1.6e-72
BLAST match view associations BLAST with shep shep shep Protein alan shepard	protein from Drosophila grimshawi	2.0e-72
BLAST match view associations BLAST with shep shep shep Protein alan shepard	protein from Drosophila virilis	2.0e-72
BLAST match view associations BLAST with shep shep shep Protein alan shepard	protein from Drosophila erecta	2.5e-72
BLAST match view associations BLAST with shep shep shep Protein alan shepard	protein from Drosophila yakuba	2.5e-72
BLAST match view associations BLAST with shep shep shep alan shepard	protein from Drosophila melanogaster	2.3e-71
BLAST match view associations BLAST with shep shep shep Protein alan shepard	protein from Drosophila sechellia	2.3e-71
BLAST match view associations BLAST with shep shep shep Protein alan shepard	protein from Drosophila simulans	2.4e-69
BLAST match view associations BLAST with shep shep shep Protein alan shepard	protein from Drosophila mojavensis	4.4e-68
BLAST match view associations BLAST with shep shep shep Protein alan shepard	protein from Drosophila ananassae	1.7e-66
BLAST match view associations BLAST with rbms1a rbms1a rbms1a RNA binding motif, single stranded interacting protein 1a	gene_product from Danio rerio	5.1e-58
BLAST match view associations BLAST with RBMS1 RBMS1 RBMS1 RNA-binding motif, single-stranded-interacting protein 1	protein from Bos taurus	9.6e-57
BLAST match view associations BLAST with RBMS1 RBMS1 RBMS1 Uncharacterized protein	protein from Canis lupus familiaris	1.2e-56
BLAST match view associations BLAST with RBMS1 RBMS1 RBMS1 RNA-binding motif, single-stranded-interacting protein 1	protein from Homo sapiens	1.6e-56
BLAST match view associations BLAST with RBMS1 RBMS1 RBMS1 Uncharacterized protein	protein from Canis lupus familiaris	2.0e-56
BLAST match view associations BLAST with RBMS1 RBMS1 RBMS1 RNA-binding motif, single-stranded-interacting protein 1	protein from Homo sapiens	2.0e-56
BLAST match view associations BLAST with RBMS1 RBMS1 RBMS1 RNA-binding motif, single-stranded-interacting protein 1	protein from Homo sapiens	3.3e-56
BLAST match view associations BLAST with Rbms1 Rbms1 Rbms1 RNA binding motif, single stranded interacting protein 1	gene from Rattus norvegicus	4.2e-56
BLAST match view associations BLAST with Rbms1 Rbms1 Rbms1 RNA binding motif, single stranded interacting protein 1	protein from Mus musculus	5.3e-56
BLAST match view associations BLAST with rbms2b rbms2b rbms2b RNA binding motif, single stranded interacting protein 2b	gene_product from Danio rerio	6.8e-56
BLAST match view associations BLAST with RBMS2 RBMS2 RBMS2 RNA-binding motif, single-stranded-interacting protein 2	protein from Homo sapiens	1.4e-55
BLAST match view associations BLAST with LOC100525434 LOC100525434 LOC100525434 Uncharacterized protein	protein from Sus scrofa	1.8e-55
BLAST match view associations BLAST with RBMS1 RBMS1 RBMS1 Uncharacterized protein	protein from Gallus gallus	1.3e-54
BLAST match view associations BLAST with RBMS2 RBMS2 RBMS2 RNA-binding motif, single-stranded-interacting protein 2	protein from Homo sapiens	4.3e-54
BLAST match view associations BLAST with RBMS2 RBMS2 RBMS2 RNA-binding motif, single-stranded-interacting protein 2	protein from Bos taurus	8.9e-54
BLAST match view associations BLAST with RBMS3 RBMS3 RBMS3 Uncharacterized protein	protein from Canis lupus familiaris	8.9e-54
BLAST match view associations BLAST with RBMS3 RBMS3 RBMS3 RNA-binding motif, single-stranded-interacting protein 3	protein from Homo sapiens	8.9e-54
BLAST match view associations BLAST with RBMS3 RBMS3 RBMS3 RNA-binding motif, single-stranded-interacting protein 3	protein from Homo sapiens	8.9e-54
BLAST match view associations BLAST with RBMS3 RBMS3 RBMS3 Uncharacterized protein	protein from Bos taurus	1.5e-53
BLAST match view associations BLAST with RBMS3 RBMS3 RBMS3 RNA-binding motif, single-stranded-interacting protein 3	protein from Homo sapiens	1.5e-53
BLAST match view associations BLAST with RBMS3 RBMS3 RBMS3 RNA-binding motif, single-stranded-interacting protein 3	protein from Homo sapiens	1.5e-53
BLAST match view associations BLAST with RBMS2 RBMS2 RBMS2 Uncharacterized protein	protein from Canis lupus familiaris	1.9e-53
BLAST match view associations BLAST with RBMS2 RBMS2 RBMS2 Uncharacterized protein	protein from Sus scrofa	1.9e-53
BLAST match view associations BLAST with Rbms2 Rbms2 Rbms2 RNA binding motif, single stranded interacting protein 2	protein from Mus musculus	1.9e-53
BLAST match view associations BLAST with Rbms2 Rbms2 Rbms2 RNA binding motif, single stranded interacting protein 2	gene from Rattus norvegicus	2.4e-53
BLAST match view associations BLAST with rbms3 rbms3 rbms3 RNA binding motif, single stranded interacting protein	gene_product from Danio rerio	3.8e-53
BLAST match view associations BLAST with Rbms3 Rbms3 Rbms3 RNA binding motif, single stranded interacting protein	protein from Mus musculus	2.7e-52
BLAST match view associations BLAST with Rbms3 Rbms3 Rbms3 RNA binding motif, single stranded interacting protein 3	gene from Rattus norvegicus	3.5e-52
BLAST match view associations BLAST with sup-26 sup-26 sup-26	gene from Caenorhabditis elegans	7.1e-45
BLAST match view associations BLAST with RBMS1 RBMS1 RBMS1 RNA-binding motif, single-stranded-interacting protein 1	protein from Homo sapiens	1.0e-36
BLAST match view associations BLAST with RBMS3 RBMS3 RBMS3 Uncharacterized protein	protein from Gallus gallus	2.2e-25
BLAST match view associations BLAST with RBMS2 RBMS2 RBMS2 RNA-binding motif, single-stranded-interacting protein 2	protein from Homo sapiens	1.6e-24
BLAST match view associations BLAST with ELAVL1 ELAVL1 ELAVL1 Uncharacterized protein	protein from Bos taurus	7.9e-24
BLAST match view associations BLAST with Elavl1 Elavl1 Elavl1 ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R)	protein from Mus musculus	2.1e-23
BLAST match view associations BLAST with Elavl1 Elavl1 Elavl1 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	gene from Rattus norvegicus	2.1e-23
BLAST match view associations BLAST with Elavl2 Elavl2 Elavl2 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	protein from Mus musculus	2.9e-23
BLAST match view associations BLAST with Rbp9 Rbp9 Rbp9 RNA-binding protein 9	protein from Drosophila melanogaster	3.2e-23
BLAST match view associations BLAST with LOC480466 LOC480466 LOC480466 Uncharacterized protein	protein from Canis lupus familiaris	3.4e-23
BLAST match view associations BLAST with ELAVL1 ELAVL1 ELAVL1 Uncharacterized protein	protein from Sus scrofa	3.4e-23
BLAST match view associations BLAST with ELAVL2 ELAVL2 ELAVL2 Uncharacterized protein	protein from Bos taurus	3.8e-23
BLAST match view associations BLAST with ELAVL2 ELAVL2 ELAVL2 Uncharacterized protein	protein from Canis lupus familiaris	4.8e-23
BLAST match view associations BLAST with ELAVL2 ELAVL2 ELAVL2 ELAV-like protein 2	protein from Homo sapiens	4.8e-23
BLAST match view associations BLAST with ELAVL2 ELAVL2 ELAVL2 ELAV-like protein 2	protein from Homo sapiens	4.8e-23
BLAST match view associations BLAST with ELAVL1 ELAVL1 ELAVL1 cDNA FLJ60076, highly similar to ELAV-like protein 1	protein from Homo sapiens	5.4e-23
BLAST match view associations BLAST with ELAVL1 ELAVL1 ELAVL1 ELAV-like protein 1	protein from Homo sapiens	5.4e-23
BLAST match view associations BLAST with Elavl2 Elavl2 Elavl2 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	gene from Rattus norvegicus	1.6e-22
BLAST match view associations BLAST with Elavl2 Elavl2 Elavl2 ELAV-like protein 2	protein from Rattus norvegicus	1.6e-22
BLAST match view associations BLAST with exc-7 exc-7 exc-7	gene from Caenorhabditis elegans	1.4e-21
BLAST match view associations BLAST with elavl2 elavl2 elavl2 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	gene_product from Danio rerio	1.5e-21
BLAST match view associations BLAST with ELAVL4 ELAVL4 ELAVL4 Uncharacterized protein	protein from Gallus gallus	2.6e-21
BLAST match view associations BLAST with elavl3 elavl3 elavl3 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)	gene_product from Danio rerio	3.9e-21
BLAST match view associations BLAST with fne fne fne found in neurons	protein from Drosophila melanogaster	9.6e-21
BLAST match view associations BLAST with ELAVL1 ELAVL1 ELAVL1 Uncharacterized protein	protein from Gallus gallus	1.0e-20
BLAST match view associations BLAST with elavl1 elavl1 elavl1 ELAV-like protein 1	protein from Xenopus (Silurana) tropicalis	2.1e-20
BLAST match view associations BLAST with Elavl3 Elavl3 Elavl3 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)	protein from Mus musculus	2.6e-20
BLAST match view associations BLAST with Elavl3 Elavl3 Elavl3 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)	gene from Rattus norvegicus	2.6e-20
BLAST match view associations BLAST with ELAVL3 ELAVL3 ELAVL3 Uncharacterized protein	protein from Canis lupus familiaris	3.4e-20
BLAST match view associations BLAST with ELAVL3 ELAVL3 ELAVL3 ELAV-like protein 3	protein from Homo sapiens	3.4e-20
BLAST match view associations BLAST with LOC100515074 LOC100515074 LOC100515074 Uncharacterized protein	protein from Sus scrofa	3.4e-20
BLAST match view associations BLAST with ELAVL3 ELAVL3 ELAVL3 Uncharacterized protein	protein from Bos taurus	3.4e-20
BLAST match view associations BLAST with elavl1-b elavl1-b elavl1-b ELAV-like protein 1-B	protein from Xenopus laevis	4.4e-20
BLAST match view associations BLAST with elavl4 elavl4 elavl4 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	gene_product from Danio rerio	5.2e-20
BLAST match view associations BLAST with ELAVL4 ELAVL4 ELAVL4 Uncharacterized protein	protein from Gallus gallus	6.4e-20
BLAST match view associations BLAST with elavl2 elavl2 elavl2 ELAV-like protein 2	protein from Xenopus laevis	6.8e-20
BLAST match view associations BLAST with ELAVL4 ELAVL4 ELAVL4 Uncharacterized protein	protein from Bos taurus	1.0e-19
BLAST match view associations BLAST with ELAVL4 ELAVL4 ELAVL4 Uncharacterized protein	protein from Canis lupus familiaris	1.0e-19
BLAST match view associations BLAST with ELAVL4 ELAVL4 ELAVL4 ELAV-like protein 4	protein from Homo sapiens	1.1e-19
BLAST match view associations BLAST with Elavl4 Elavl4 Elavl4 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4	gene from Rattus norvegicus	1.2e-19
BLAST match view associations BLAST with ELAVL4 ELAVL4 ELAVL4 ELAV-like protein 4	protein from Homo sapiens	1.3e-19
BLAST match view associations BLAST with ELAVL4 ELAVL4 ELAVL4 Uncharacterized protein	protein from Canis lupus familiaris	1.3e-19
BLAST match view associations BLAST with ELAVL4 ELAVL4 ELAVL4 ELAV-like protein 4	protein from Homo sapiens	1.4e-19
BLAST match view associations BLAST with Elavl4 Elavl4 Elavl4 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	protein from Mus musculus	1.4e-19
BLAST match view associations BLAST with elavl1 elavl1 elavl1 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	gene_product from Danio rerio	8.3e-19
BLAST match view associations BLAST with Sxl Sxl Sxl Sex lethal	protein from Drosophila melanogaster	1.6e-18
BLAST match view associations BLAST with ssx ssx ssx sister-of-Sex-lethal	protein from Drosophila melanogaster	5.7e-18
BLAST match view associations BLAST with ELAVL2 ELAVL2 ELAVL2 ELAV-like protein 2	protein from Homo sapiens	1.6e-17