RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4086
(305 letters)
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 78.5 bits (192), Expect = 4e-18
Identities = 39/178 (21%), Positives = 69/178 (38%), Gaps = 18/178 (10%)
Query: 53 PEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGY 112
PEQL K L+I GL+ +TTD+ L + Q+G + + D T + RG+GFV + +
Sbjct: 3 PEQLRK--LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 60
Query: 113 ALAAVKALQD------------KGIHAQMARQQEQDPTNLYIANLPLNFKECDLESLLAK 160
AA+ A +++ + + +E L +
Sbjct: 61 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 120
Query: 161 YVTVVSTRILRD-NNNTSKGVGFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADS 217
Y + I+ D + +G F + D D+++ T+ G V+ A S
Sbjct: 121 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGH--NCEVRKALS 175
Score = 53.5 bits (127), Expect = 3e-09
Identities = 18/111 (16%), Positives = 40/111 (36%), Gaps = 4/111 (3%)
Query: 29 QNGGTHPITTNNVQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIIST 88
+ + + L+ +++ G+ +DT + L + QYG I
Sbjct: 68 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 127
Query: 89 KAILDKTTNKCRGYGFVDFESGGYALAAV----KALQDKGIHAQMARQQEQ 135
+ + D+ + K RG+ FV F+ V + + A +++
Sbjct: 128 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 178
Score = 36.5 bits (83), Expect = 0.002
Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 132 QQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNN-NTSKGVGFARLESKDK 190
++ + L+I L + L S ++ T+ ++RD N S+G GF + ++
Sbjct: 1 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 60
Query: 191 CDQMIQLFNG 200
D +
Sbjct: 61 VDAAMNARPH 70
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 76.0 bits (186), Expect = 5e-18
Identities = 55/101 (54%), Positives = 73/101 (72%), Gaps = 6/101 (5%)
Query: 120 LQDKGIHAQMARQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKG 179
L+ G+ AQMA+QQEQDPTNLYI+NLPL+ E +LE++L + V+STRILRD++ TS+G
Sbjct: 1 LKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRG 60
Query: 180 VGFARLESKDKCDQMIQLFNGSTL------PGSKEPLLVKF 214
VGFAR+ES +KC+ +I FNG + EPLL KF
Sbjct: 61 VGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKF 101
Score = 39.0 bits (90), Expect = 6e-05
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 1/97 (1%)
Query: 41 VQHNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCR 100
++ +G ++ TNLYI L +++L NM +G +IST+ + ++ R
Sbjct: 1 LKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRIL-RDSSGTSR 59
Query: 101 GYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDP 137
G GF ES A + K I +P
Sbjct: 60 GVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEP 96
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 64.2 bits (156), Expect = 5e-14
Identities = 23/73 (31%), Positives = 34/73 (46%)
Query: 54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYA 113
E + TNLY+ L + TD L + +YG I+ + DK T + RG FV + A
Sbjct: 2 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEA 61
Query: 114 LAAVKALQDKGIH 126
A+ AL +
Sbjct: 62 QEAISALNNVIPE 74
Score = 59.2 bits (143), Expect = 3e-12
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 136 DPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNT-SKGVGFARLESKDKCDQM 194
TNLY+ NLP + L+++ KY ++V ILRD +GV F R +++ +
Sbjct: 5 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEA 64
Query: 195 IQLFNGSTLPGSKEPLLVKFA 215
I N G +PL V+ A
Sbjct: 65 ISALNNVIPEGGSQPLSVRLA 85
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 63.8 bits (155), Expect = 9e-14
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVK 118
++L + GL TT++DL S +G ++ + D T +G+GFV F + +
Sbjct: 9 SDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS 68
Query: 119 A---LQDKGIHAQMAR-QQEQD 136
+ + ++ +Q QD
Sbjct: 69 QRHMIDGRWCDCKLPNSKQSQD 90
Score = 45.7 bits (108), Expect = 3e-07
Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Query: 131 RQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRD-NNNTSKGVGFARLESKD 189
++ Q ++L + LP E DL+ + + V+ ++ +D SKG GF R +
Sbjct: 2 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYE 61
Query: 190 KCDQMIQLFNGSTLPGSKEPLLVKFADS 217
+++ + G K +S
Sbjct: 62 TQVKVMS--QRHMIDGRW--CDCKLPNS 85
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 61.9 bits (150), Expect = 5e-13
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 53 PEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKT-TNKCRGYGFVDFESGG 111
P++ + + + +R + +++ + S +G + + + T T RG+GFVDF +
Sbjct: 3 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQ 62
Query: 112 YALAAVKALQDK 123
A A AL
Sbjct: 63 DAKKAFNALCHS 74
Score = 55.7 bits (134), Expect = 8e-11
Identities = 18/98 (18%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Query: 128 QMARQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLES 187
Q+ + +Q + + + N+P + ++ L + + + + R+ + T GF ++
Sbjct: 1 QVPK--KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDF 58
Query: 188 KDKCDQ---MIQLFNGSTLPGSKEPLLVKFADSGLKKR 222
K D L + + L G L++++ADS + +
Sbjct: 59 ITKQDAKKAFNALCHSTHLYGR--RLVLEWADSEVTVQ 94
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 58.9 bits (142), Expect = 4e-12
Identities = 25/68 (36%), Positives = 39/68 (57%)
Query: 59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVK 118
NLY+ GL + T K+L + SQYG II+++ ++D+ T RG GF+ F+ A A+K
Sbjct: 7 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 66
Query: 119 ALQDKGIH 126
L +
Sbjct: 67 GLNGQKPS 74
Score = 57.8 bits (139), Expect = 1e-11
Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 138 TNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNT-SKGVGFARLESKDKCDQMIQ 196
NLY++ LP + +LE L ++Y ++++RIL D S+GVGF R + + + ++ I+
Sbjct: 7 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 66
Query: 197 LFNGSTLPGSKEPLLVKFA 215
NG G+ EP+ VKFA
Sbjct: 67 GLNGQKPSGATEPITVKFA 85
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 59.3 bits (143), Expect = 7e-12
Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 15/114 (13%)
Query: 53 PEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGY 112
P ++++ LYIR L T +++ ++ +YGPI + T + RG +V +E
Sbjct: 3 PPEVNRI-LYIRNLPYKITAEEMYDIFGKYGPIRQIR---VGNTPETRGTAYVVYEDIFD 58
Query: 113 ALAAVKALQ-----DKGIHAQMARQQEQDPTNLYIANLPLNFKECDLESLLAKY 161
A A L ++ + + KE L+ L KY
Sbjct: 59 AKNACDHLSGFNVCNRYLVVLYYNANRAFQ------KMDTKKKEEQLKLLKEKY 106
Score = 45.8 bits (108), Expect = 4e-07
Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 4/80 (5%)
Query: 138 TNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQL 197
LYI NLP ++ + KY + R N ++G + E
Sbjct: 8 RILYIRNLPYKITAEEMYDIFGKYGPIRQIR--VGNTPETRGTAYVVYEDIFDAKNACDH 65
Query: 198 FNGSTLPGSKEPLLVKFADS 217
+G + L+V + ++
Sbjct: 66 LSGFNVCNR--YLVVLYYNA 83
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 57.4 bits (138), Expect = 3e-11
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 53 PEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGY 112
EQ K L+I GL+ +TT++ L N Q+G + + D + + RG+GFV F S
Sbjct: 17 KEQFRK--LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 74
Query: 113 ALAAVKA----LQDKGIHAQMARQQEQ 135
AA+ A + + + + A +E+
Sbjct: 75 VDAAMAARPHSIDGRVVEPKRAVAREE 101
Score = 40.0 bits (93), Expect = 3e-05
Identities = 16/96 (16%), Positives = 39/96 (40%), Gaps = 4/96 (4%)
Query: 123 KGIHAQMARQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRD-NNNTSKGVG 181
+ + + +++++ L+I L E L + ++ + ++RD + S+G G
Sbjct: 6 ETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFG 65
Query: 182 FARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFADS 217
F S + D + ++ G + K A +
Sbjct: 66 FVTFSSMAEVDAAMAA-RPHSIDGRV--VEPKRAVA 98
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 55.8 bits (134), Expect = 6e-11
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 53 PEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGY 112
PEQL K L+I GL+ +TTD+ L + Q+G + + D T + RG+GFV + +
Sbjct: 3 PEQLRK--LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 60
Query: 113 ALAAVKA 119
AA+ A
Sbjct: 61 VDAAMNA 67
Score = 40.8 bits (95), Expect = 1e-05
Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
Query: 132 QQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRD-NNNTSKGVGFARLESKDK 190
++ + L+I L + L S ++ T+ ++RD N S+G GF + ++
Sbjct: 1 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 60
Query: 191 CDQMIQLFNGSTLPGSKEPLLVKFADS 217
D + + G + K A S
Sbjct: 61 VDAAMNA-RPHKVDGRV--VEPKRAVS 84
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 55.3 bits (133), Expect = 7e-11
Identities = 20/67 (29%), Positives = 31/67 (46%)
Query: 60 NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
+LY+ L D T+ L S GPI+S + D T + GY +V+F+ A A+
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 61
Query: 120 LQDKGIH 126
+ I
Sbjct: 62 MNFDVIK 68
Score = 48.4 bits (115), Expect = 2e-08
Identities = 14/78 (17%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 139 NLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNT-SKGVGFARLESKDKCDQMIQL 197
+LY+ +L + E L + ++S R+ RD S G + + ++ +
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 61
Query: 198 FNGSTLPGSKEPLLVKFA 215
N + G P+ + ++
Sbjct: 62 MNFDVIKGK--PVRIMWS 77
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 54.6 bits (131), Expect = 1e-10
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA- 119
++I GL+ TT + L Q+G + + D T + RG+GFV F +
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 62
Query: 120 ---LQDKGIHAQMA 130
L K I ++A
Sbjct: 63 RHELDSKTIDPKVA 76
Score = 39.2 bits (91), Expect = 4e-05
Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 4/77 (5%)
Query: 140 LYIANLPLNFKECDLESLLAKYVTVVSTRILRD-NNNTSKGVGFARLESKDKCDQMIQLF 198
++I L + L ++ V ++RD S+G GF + D+++
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ- 61
Query: 199 NGSTLPGSKEPLLVKFA 215
+ L + K A
Sbjct: 62 SRHELDSKT--IDPKVA 76
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 55.0 bits (132), Expect = 1e-10
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 54 EQLSK--TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGG 111
E+L K LY+ L+ TT++ + + S+ G I LDK G+ FV++ S
Sbjct: 1 EKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRA 60
Query: 112 YALAAVKALQDKGIH 126
A A++ + +
Sbjct: 61 DAENAMRYINGTRLD 75
Score = 40.7 bits (95), Expect = 1e-05
Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 3/89 (3%)
Query: 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRD-NNNTSKGVGFARLESKDKCDQ 193
+ LY+ NL E + L +K + + D T+ G F S+ +
Sbjct: 5 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAEN 64
Query: 194 MIQLFNGSTLPGSKEPLLVKFADSGLKKR 222
++ NG+ L + + + R
Sbjct: 65 AMRYINGTRLDDR--IIRTDWDAGFKEGR 91
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 54.7 bits (131), Expect = 1e-10
Identities = 24/82 (29%), Positives = 39/82 (47%)
Query: 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAA 116
SKTNL + L Q+ T ++ ++ G I S K + DK T + GYGFV++ A A
Sbjct: 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 60
Query: 117 VKALQDKGIHAQMARQQEQDPT 138
+ L + + + P+
Sbjct: 61 INTLNGLRLQTKTIKVSYARPS 82
Score = 40.5 bits (94), Expect = 1e-05
Identities = 18/79 (22%), Positives = 26/79 (32%), Gaps = 3/79 (3%)
Query: 138 TNLYIANLPLNFKECDLESLLAKY-VTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQ 196
TNL + LP N + + SL + S G GF ++ I
Sbjct: 3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 62
Query: 197 LFNGSTLPGSKEPLLVKFA 215
NG L + V +A
Sbjct: 63 TLNGLRLQTK--TIKVSYA 79
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 54.7 bits (131), Expect = 2e-10
Identities = 23/70 (32%), Positives = 35/70 (50%)
Query: 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAA 116
+K LY+ GL ++ DK L +G I + LD T K RG+ FV+FE A AA
Sbjct: 4 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAA 63
Query: 117 VKALQDKGIH 126
+ + + +
Sbjct: 64 IDNMNESELF 73
Score = 40.8 bits (95), Expect = 1e-05
Identities = 18/88 (20%), Positives = 28/88 (31%), Gaps = 7/88 (7%)
Query: 129 MARQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNN-TSKGVGFARLES 187
MA + LY+ L + L + + + +I D +G F E
Sbjct: 1 MATTK----RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFEL 56
Query: 188 KDKCDQMIQLFNGSTLPGSKEPLLVKFA 215
+ I N S L G + V A
Sbjct: 57 AEDAAAAIDNMNESELFGR--TIRVNLA 82
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 54.0 bits (129), Expect = 2e-10
Identities = 47/72 (65%), Positives = 56/72 (77%)
Query: 61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKAL 120
LYIRGL TTD+DL+ +C YG I+STKAILDKTTNKC+GYGFVDF+S A AV AL
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 121 QDKGIHAQMARQ 132
+ G+ AQMA+Q
Sbjct: 61 KASGVQAQMAKQ 72
Score = 32.4 bits (73), Expect = 0.007
Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 140 LYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNN-TSKGVGFARLESKDKCDQMIQLF 198
LYI L + DL L Y +VST+ + D KG GF +S + +
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 199 NGSTLPGSK 207
S +
Sbjct: 61 KASGVQAQM 69
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 53.9 bits (129), Expect = 3e-10
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 52 GP--EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFES 109
GP E+ +Y+ GL + ++ L + Q GP+++T D+ T + +GYGFV+F S
Sbjct: 1 GPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLS 60
Query: 110 GGYALAAVKALQ-----DKGIHAQMARQQEQD 136
A A+K + K I A ++
Sbjct: 61 EEDADYAIKIMDMIKLYGKPIRVNKASAHNKN 92
Score = 43.5 bits (102), Expect = 2e-06
Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
Query: 132 QQEQDP-TNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNT-SKGVGFARLESKD 189
E++ +Y+ L E L L + VV+T + +D +G GF S++
Sbjct: 3 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 62
Query: 190 KCDQMIQLFNGSTLPGSKEPLLVKFADS 217
D I++ + L G P+ V A +
Sbjct: 63 DADYAIKIMDMIKLYGK--PIRVNKASA 88
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 53.1 bits (127), Expect = 5e-10
Identities = 25/70 (35%), Positives = 35/70 (50%)
Query: 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAA 116
S TNL + L QD TD++L + GPI + + + D T GY FVDF S + A
Sbjct: 1 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRA 60
Query: 117 VKALQDKGIH 126
+K L +
Sbjct: 61 IKVLNGITVR 70
Score = 46.9 bits (111), Expect = 8e-08
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 3/82 (3%)
Query: 138 TNLYIANLPLNFKECDLESLLAKYVTVVS-TRILRDNNNTSKGVGFARLESKDKCDQMIQ 196
TNL + LP + + +L +L + + + S G F S+ + I+
Sbjct: 3 TNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIK 62
Query: 197 LFNGSTLPGSKEPLLVKFADSG 218
+ NG T+ L V +A G
Sbjct: 63 VLNGITVRNK--RLKVSYARPG 82
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 53.5 bits (128), Expect = 6e-10
Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 4/93 (4%)
Query: 46 SPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFV 105
P PE+ ++ L +DL + S G + + I D+ + + +G +V
Sbjct: 6 EPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYV 65
Query: 106 DFESGGYALAAVKA----LQDKGIHAQMARQQE 134
+F A+ L I Q ++ ++
Sbjct: 66 EFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEK 98
Score = 49.6 bits (118), Expect = 1e-08
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Query: 132 QQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNT-SKGVGFARLESKDK 190
+E+D ++ L + DLE + V RI+ D N+ SKG+ +
Sbjct: 13 PEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQS 72
Query: 191 CDQMIQLFNGSTLPGSKEPLLVKFADS 217
I L G L G P++V+ + +
Sbjct: 73 VPLAIGL-TGQRLLGV--PIIVQASQA 96
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 53.5 bits (128), Expect = 7e-10
Identities = 11/94 (11%), Positives = 31/94 (32%), Gaps = 2/94 (2%)
Query: 121 QDKGIHAQMARQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGV 180
++ +Q A +++ + F E + KY V + + + G
Sbjct: 11 RNPQNSSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGN 70
Query: 181 GFARLESKDKCDQMIQLFNGSTLPGSKEPLLVKF 214
+ + ++ ++ + N G P+ +
Sbjct: 71 VYVKFRREEDAEKAVIDLNNRWFNGQ--PIHAEL 102
Score = 44.6 bits (105), Expect = 7e-07
Identities = 11/68 (16%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Query: 59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVK 118
+++ ++ + ++ M +YG + + D + G +V F A AV
Sbjct: 28 SDVEMQEHYDEFFEEVFTEMEEKYGEVEEMN-VCDNLGDHLVGNVYVKFRREEDAEKAVI 86
Query: 119 ALQDKGIH 126
L ++ +
Sbjct: 87 DLNNRWFN 94
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 52.3 bits (125), Expect = 7e-10
Identities = 14/59 (23%), Positives = 30/59 (50%)
Query: 61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
+++ GL+ DT ++ + +G + S + +D TNK RG+ F+ F+ ++
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60
Score = 32.2 bits (73), Expect = 0.010
Identities = 12/77 (15%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Query: 140 LYIANLPLNFKECDLESLLAKYVTVVSTRILRD-NNNTSKGVGFARLESKDKCDQMIQLF 198
+++ L + E + + V S + D N +G F + ++ ++++
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK- 60
Query: 199 NGSTLPGSKEPLLVKFA 215
+ SK +K A
Sbjct: 61 KYHNVGLSK--CEIKVA 75
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 53.2 bits (127), Expect = 7e-10
Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Query: 59 TNLYIRGLTQDTTDKDLINMCSQYGPIIST--KAILDKTTNKCRGYGFVDFESGGYALAA 116
L+I G+ + ++++ ++ + K RG+ FV++ES A A
Sbjct: 2 CRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMA 61
Query: 117 VKALQDKGIH 126
+ L I
Sbjct: 62 RRKLMPGRIQ 71
Score = 42.8 bits (100), Expect = 3e-06
Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 3/82 (3%)
Query: 138 TNLYIANLPLNFKECDLESLLAKY---VTVVSTRILRDNNNTSKGVGFARLESKDKCDQM 194
L+I +P K ++ +AK V V + ++G F ES
Sbjct: 2 CRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMA 61
Query: 195 IQLFNGSTLPGSKEPLLVKFAD 216
+ + + V +A+
Sbjct: 62 RRKLMPGRIQLWGHQIAVDWAE 83
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 52.0 bits (124), Expect = 1e-09
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKT---TNKCRGYGFVDFESGGYALAAV 117
L+I+ L TT++ L + S+ G I S K G+GFV+++ A A+
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 118 KALQ-----DKGIHAQMARQQEQ 135
K LQ + +++ + +
Sbjct: 61 KQLQGHTVDGHKLEVRISERATK 83
Score = 43.5 bits (102), Expect = 1e-06
Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Query: 140 LYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGV----GFARLESKDKCDQMI 195
L+I NL + E L+ + +K + S I + N + GF + ++ + +
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 196 QLFNGSTLPGSKEPLLVKFADSGLK 220
+ G T+ G L V+ ++ K
Sbjct: 61 KQLQGHTVDGH--KLEVRISERATK 83
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 51.9 bits (124), Expect = 1e-09
Identities = 14/66 (21%), Positives = 27/66 (40%)
Query: 61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKAL 120
L+I GL D + + + +GP+ + + D T +GY F ++ A+ L
Sbjct: 4 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 63
Query: 121 QDKGIH 126
+
Sbjct: 64 NGMQLG 69
Score = 46.2 bits (109), Expect = 1e-07
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 140 LYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNT-SKGVGFARLESKDKCDQMIQLF 198
L+I LP + ++ LL + + + +++D+ SKG F + DQ I
Sbjct: 4 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 63
Query: 199 NGSTLPGSKEPLLVKFADSGLK 220
NG L LLV+ A G K
Sbjct: 64 NGMQLGDK--KLLVQRASVGAK 83
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 51.6 bits (123), Expect = 2e-09
Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
Query: 48 GTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDF 107
G +G T + ++ + + ++++ Y I + + G V F
Sbjct: 1 GASSGKP--GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAF 58
Query: 108 ESGGYALAAVKALQDKGIH 126
ES A AAV L D+ I
Sbjct: 59 ESRDEATAAVIDLNDRPIG 77
Score = 50.8 bits (121), Expect = 3e-09
Identities = 12/83 (14%), Positives = 27/83 (32%), Gaps = 3/83 (3%)
Query: 134 EQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDN-NNTSKGVGFARLESKDKCD 192
+ PT + + N+P ++ Y + + L+ N G ES+D+
Sbjct: 6 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEAT 65
Query: 193 QMIQLFNGSTLPGSKEPLLVKFA 215
+ N + + +
Sbjct: 66 AAVIDLNDRPIGSR--KVKLVLG 86
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 51.1 bits (122), Expect = 2e-09
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA 119
++I GL+ DTT KDL + S++G ++ LD T + RG+GFV F+ +
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Score = 35.3 bits (81), Expect = 7e-04
Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 140 LYIANLPLNFKECDLESLLAKYVTVVSTRILRD-NNNTSKGVGFARLESKDKCDQMIQLF 198
++I L + + DL+ +K+ VV + D S+G GF + + D+++
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ- 60
Query: 199 NGSTLPGSK 207
L G
Sbjct: 61 KEHKLNGKV 69
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 50.3 bits (120), Expect = 4e-09
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 140 LYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFN 199
L ++NL + D++ L A++ T+ + D + S G E K + ++ +N
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYN 62
Query: 200 GSTLPGSKEPLLVKFADS 217
G L G P+ ++ S
Sbjct: 63 GVPLDGR--PMNIQLVTS 78
Score = 48.0 bits (114), Expect = 3e-08
Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKAL 120
L + L +D D+ + +++G + + + + G V FE AL A+K
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAA-VHYDRSGRSLGTADVHFERKADALKAMKQY 61
Query: 121 QDKGIH 126
+
Sbjct: 62 NGVPLD 67
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 50.5 bits (120), Expect = 4e-09
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 48 GTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDF 107
G P+ L + GL+ TT++DL + S+YGPI + D+ + + RG+ FV F
Sbjct: 1 GNRANPDP--NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYF 58
Query: 108 ESGGYALAAVKALQDKGIH 126
E+ A A + +
Sbjct: 59 ENVDDAKEAKERANGMELD 77
Score = 36.6 bits (84), Expect = 4e-04
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Query: 131 RQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNN-TSKGVGFARLESKD 189
R L + L L E DL + +KY + I+ D + S+G F E+ D
Sbjct: 3 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVD 62
Query: 190 KCDQMIQLFNGSTLPGSK 207
+ + NG L G +
Sbjct: 63 DAKEAKERANGMELDGRR 80
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 50.8 bits (121), Expect = 5e-09
Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
Query: 48 GTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDF 107
G GP + +Y+ L D KD+ ++ +YG I + I K + FV+F
Sbjct: 4 GVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAI---RDIDLKNRRGGPPFAFVEF 60
Query: 108 ESGGYALAAVKALQDKGIH 126
E A AV
Sbjct: 61 EDPRDAEDAVYGRDGYDYD 79
Score = 47.0 bits (111), Expect = 1e-07
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 7/90 (7%)
Query: 136 DPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMI 195
+ +Y+ NLP + + D+E + KY + + F E + +
Sbjct: 13 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGG--PPFAFVEFEDPRDAEDAV 70
Query: 196 QLFNGSTLPGSKEPLLVKFADSGLKKRGAG 225
+G G L V+F SG RG G
Sbjct: 71 YGRDGYDYDGY--RLRVEFPRSG---RGTG 95
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 49.5 bits (118), Expect = 1e-08
Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 10/84 (11%)
Query: 45 GSPG-TPTGPEQLSKTNLYIRGLTQDTTDK-DLINMCSQYGPIISTKAILDKTTNKCRGY 102
GS G + + + ++I L K D+ + S+YG I+ +G+
Sbjct: 1 GSSGSSGKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCS--------VHKGF 52
Query: 103 GFVDFESGGYALAAVKALQDKGIH 126
FV + + A AAV + I
Sbjct: 53 AFVQYVNERNARAAVAGEDGRMIA 76
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 49.0 bits (116), Expect = 1e-08
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAI-LDKTTNKCRGYGFVDFESGGYALAAVKA 119
++I L + +K L + S +G I+ T I D T +GY F++F S + AA++A
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 120 -----LQDKGIHAQMARQQEQ 135
L ++ I A +++
Sbjct: 61 MNGQYLCNRPITVSYAFKKDS 81
Score = 43.6 bits (102), Expect = 1e-06
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 140 LYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNT--SKGVGFARLESKDKCDQMIQL 197
++I NL E L + + ++ T + + +T SKG F S D D I+
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 198 FNGSTLPGSKEPLLVKFADSGLKKRG 223
NG L P+ V +A +G
Sbjct: 61 MNGQYLCNR--PITVSYAFKK-DSKG 83
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 48.9 bits (116), Expect = 2e-08
Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 17/98 (17%)
Query: 45 GSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGF 104
GS G+ + +++ T D T+ +L SQYG ++ R + F
Sbjct: 1 GSSGS---------SGVFVGRCTGDMTEDELREFFSQYGDVMD-----VFIPKPFRAFAF 46
Query: 105 VDFESGGYALAAVKA---LQDKGIHAQMARQQEQDPTN 139
V F A + ++ +H A + +
Sbjct: 47 VTFADDQIAQSLCGEDLIIKGISVHISNAEPKHNSNSG 84
Score = 37.3 bits (86), Expect = 2e-04
Identities = 8/93 (8%), Positives = 24/93 (25%), Gaps = 8/93 (8%)
Query: 136 DPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMI 195
+ +++ + E +L ++Y V+ + F +
Sbjct: 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVF----IPKPFRAFAFVTFADDQIAQSLC 59
Query: 196 QLFNGSTLPGSKEPLLVKFADSGLKKRGAGAGG 228
+ G + + A+ + G
Sbjct: 60 G--EDLIIKGI--SVHISNAEPKHNSNSGPSSG 88
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 48.1 bits (114), Expect = 4e-08
Identities = 19/86 (22%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 132 QQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKC 191
+ + P L+++N+P F++ DL + ++ ++ I+ + SKG GF E+
Sbjct: 6 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADA 64
Query: 192 DQMIQLFNGSTLPGSKEPLLVKFADS 217
D+ + +G+ + G + V A +
Sbjct: 65 DRAREKLHGTVVEGR--KIEVNNATA 88
Score = 43.9 bits (103), Expect = 1e-06
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 44 NGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYG 103
+G+ + + P L++ + D DL M Q+G I+ + I ++ +K +G
Sbjct: 2 SGNSESKSTP-----KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG--FG 54
Query: 104 FVDFESGGYALAAVKALQDKGIH 126
FV FE+ A A + L +
Sbjct: 55 FVTFENSADADRAREKLHGTVVE 77
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 47.4 bits (112), Expect = 5e-08
Identities = 23/66 (34%), Positives = 38/66 (57%)
Query: 61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKAL 120
L++ GL+ DT ++ L + S+YG I + D+ T + RG+GFV FE+ A A+ A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 121 QDKGIH 126
K +
Sbjct: 68 NGKSVD 73
Score = 40.1 bits (93), Expect = 2e-05
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Query: 136 DPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNT-SKGVGFARLESKDKCDQM 194
D L++ L + E LE + +KY + +++D S+G GF E+ D
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 195 IQLFNGSTLPGSKEPLLVKFADSGLKKR 222
+ NG ++ G + V A R
Sbjct: 64 MMAMNGKSVDGR--QIRVDQAGKSSDNR 89
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 47.3 bits (112), Expect = 6e-08
Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 12/90 (13%)
Query: 53 PEQLSKT-NLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGG 111
+ +S LY+R L T+++ + + P + K R Y FV F +
Sbjct: 2 EDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVER------VKKIRDYAFVHFSNRE 55
Query: 112 YALAAVKALQ-----DKGIHAQMARQQEQD 136
A+ A+KAL I +A+ ++D
Sbjct: 56 DAVEAMKALNGKVLDGSPIEVTLAKPVDKD 85
Score = 40.0 bits (93), Expect = 2e-05
Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 7/76 (9%)
Query: 140 LYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFN 199
LY+ NL L+ E +E R+ + + F +++ + ++ N
Sbjct: 11 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK-----IRDYAFVHFSNREDAVEAMKALN 65
Query: 200 GSTLPGSKEPLLVKFA 215
G L GS P+ V A
Sbjct: 66 GKVLDGS--PIEVTLA 79
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 48.7 bits (115), Expect = 7e-08
Identities = 33/109 (30%), Positives = 47/109 (43%), Gaps = 13/109 (11%)
Query: 47 PGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVD 106
P T PE NL + + + L + +YGPI S K + D+ T + RGYGFV
Sbjct: 31 PPTQMNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVK 90
Query: 107 FESGGYALAAVKALQ-----DKGIHAQMARQQEQDP--------TNLYI 142
F+SG A A+ L +K + +A Q P N Y+
Sbjct: 91 FQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQRPGIAGAVGDGNGYL 139
Score = 43.4 bits (101), Expect = 5e-06
Identities = 26/115 (22%), Positives = 38/115 (33%), Gaps = 5/115 (4%)
Query: 121 QDKGIHAQMARQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGV 180
Q + I + NL + +P E L L +Y + S +I+ D
Sbjct: 26 QQQHIPPTQMNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRG 85
Query: 181 GFAR-LESKDKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRGAG--AGGPNIY 232
+S Q I NG + L V A SG ++ G G N Y
Sbjct: 86 YGFVKFQSGSSAQQAIAGLNGFNILNK--RLKVALAASGHQRPGIAGAVGDGNGY 138
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 47.0 bits (111), Expect = 8e-08
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVK 118
LY+ L++D T+ ++ + SQ GP S K I + Y FV+F A AA+
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH--TSNDPYCFVEFYEHRDAAAALA 66
Query: 119 ALQDKGIH 126
A+ + I
Sbjct: 67 AMNGRKIL 74
Score = 46.2 bits (109), Expect = 2e-07
Identities = 14/91 (15%), Positives = 34/91 (37%), Gaps = 3/91 (3%)
Query: 132 QQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKC 191
+ + P LY+ NL + E + L ++ S +++ ++ + F
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYC-FVEFYEHRDA 61
Query: 192 DQMIQLFNGSTLPGSKEPLLVKFADSGLKKR 222
+ NG + G + V +A + ++
Sbjct: 62 AAALAAMNGRKILGK--EVKVNWATTPSSQK 90
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 47.1 bits (111), Expect = 1e-07
Identities = 18/97 (18%), Positives = 41/97 (42%), Gaps = 12/97 (12%)
Query: 44 NGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYG 103
+ +PG P LY++ L+ T++DL+++ +++ T + RG
Sbjct: 11 SYNPGEPN-------KVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQA 63
Query: 104 FVDFESGGYALAAVKALQ-----DKGIHAQMARQQEQ 135
F+ F + A A+ + K + + + ++Q
Sbjct: 64 FITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKKQ 100
Score = 41.3 bits (96), Expect = 1e-05
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 136 DPTN-LYIANLPLNFKECDLESLLAKYVTVVSTRILRD-NNNTSKGVGFARLESKDKCDQ 193
+P LY+ NL E DL SL A++ I +G F +K+ Q
Sbjct: 16 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQ 75
Query: 194 MIQLFNGSTLPGSKEPLLVKFADS 217
+ L NG L G L+++F +
Sbjct: 76 ALHLVNGYKLYGK--ILVIEFGKN 97
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 46.7 bits (110), Expect = 1e-07
Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 8/82 (9%)
Query: 53 PEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAI--------LDKTTNKCRGYGF 104
E + +Y++GL T DL + Q G + K LDK T K +G
Sbjct: 3 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDAT 62
Query: 105 VDFESGGYALAAVKALQDKGIH 126
V +E A AAV+ K
Sbjct: 63 VSYEDPPTAKAAVEWFDGKDFQ 84
Score = 39.0 bits (90), Expect = 6e-05
Identities = 16/93 (17%), Positives = 27/93 (29%), Gaps = 11/93 (11%)
Query: 132 QQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRD---------NNNTSKGVGF 182
++ D + +Y+ L + DL + V + KG
Sbjct: 3 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDAT 62
Query: 183 ARLESKDKCDQMIQLFNGSTLPGSKEPLLVKFA 215
E ++ F+G GS L V A
Sbjct: 63 VSYEDPPTAKAAVEWFDGKDFQGS--KLKVSLA 93
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 46.7 bits (110), Expect = 1e-07
Identities = 22/65 (33%), Positives = 27/65 (41%)
Query: 59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVK 118
T +++ GL TTD L +G I I D+ T K RGYGFV A A K
Sbjct: 11 TKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70
Query: 119 ALQDK 123
Sbjct: 71 DPNPI 75
Score = 43.6 bits (102), Expect = 2e-06
Identities = 18/106 (16%), Positives = 37/106 (34%), Gaps = 7/106 (6%)
Query: 130 ARQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNN-TSKGVGFARLESK 188
Q++ T +++ LP + + L + + ++ D S+G GF + +
Sbjct: 3 GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADR 62
Query: 189 DKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRGAGAGGPNIYRG 234
++ + N + G V A G K R + G
Sbjct: 63 AAAERACKDPNP-IIDGR--KANVNLAYLGAKPR---SLQTGFAIG 102
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 46.5 bits (110), Expect = 2e-07
Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 6/75 (8%)
Query: 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAA 116
+Y G+ TD+ + S +G I+ + +GY FV F + A A
Sbjct: 17 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHA 70
Query: 117 VKALQDKGIHAQMAR 131
+ ++ I + +
Sbjct: 71 IVSVNGTTIEGHVVK 85
Score = 43.0 bits (101), Expect = 3e-06
Identities = 10/88 (11%), Positives = 27/88 (30%), Gaps = 7/88 (7%)
Query: 128 QMARQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLES 187
+ Q +Y + + + + + ++ R+ + F R +
Sbjct: 9 DVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKG-----YSFVRFST 63
Query: 188 KDKCDQMIQLFNGSTLPGSKEPLLVKFA 215
+ I NG+T+ G + +
Sbjct: 64 HESAAHAIVSVNGTTIEGH--VVKCYWG 89
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 46.2 bits (109), Expect = 2e-07
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 40 NVQHNGSPGT-PTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNK 98
Q G+ G+ GPE NL+I L Q+ D+DL+ M +G ++S K +DK TN
Sbjct: 2 TQQSIGAAGSQKEGPE---GANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNL 58
Query: 99 CRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQEQDPTN 139
+ +GFV +++ A AA++++ I + + Q + N
Sbjct: 59 SKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKN 99
Score = 41.6 bits (97), Expect = 8e-06
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Query: 127 AQMARQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVS-TRILRDNNNTSKGVGFARL 185
A ++++ + NL+I +LP F + DL + + VVS + N SK GF
Sbjct: 8 AAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSY 67
Query: 186 ESKDKCDQMIQLFNGSTLPGSKEPLLVKFADS 217
++ IQ NG + L V+ S
Sbjct: 68 DNPVSAQAAIQSMNGFQIGMK--RLKVQLKRS 97
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 45.8 bits (108), Expect = 2e-07
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 137 PTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQ 196
N++I NL + L + + ++S +++ + N SKG GF E+++ ++ I+
Sbjct: 8 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC-DENGSKGYGFVHFETQEAAERAIE 66
Query: 197 LFNGSTLPGSKEPLLVKFADS 217
NG L + V S
Sbjct: 67 KMNGMLLNDR--KVFVGRFKS 85
Score = 44.6 bits (105), Expect = 6e-07
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVK 118
N++I+ L + +K L + S +G I+S K + D+ +K YGFV FE+ A A++
Sbjct: 9 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG--YGFVHFETQEAAERAIE 66
Query: 119 ALQ-----DKGIHAQMARQQEQ 135
+ D+ + + +++
Sbjct: 67 KMNGMLLNDRKVFVGRFKSRKE 88
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 45.8 bits (108), Expect = 2e-07
Identities = 17/68 (25%), Positives = 30/68 (44%)
Query: 59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVK 118
+ + L++DT + DL + +G I DKTT + +G+ F+ F A A+
Sbjct: 9 ATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIA 68
Query: 119 ALQDKGIH 126
+ G
Sbjct: 69 GVSGFGYD 76
Score = 42.7 bits (100), Expect = 3e-06
Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Query: 132 QQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRD-NNNTSKGVGFARLESKDK 190
++ D + + NL + +E DL+ L + ++ + +D SKG F ++
Sbjct: 3 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRRED 62
Query: 191 CDQMIQLFNGSTLPGSKEPLLVKFA 215
+ I +G L V++A
Sbjct: 63 AARAIAGVSGFGYDHL--ILNVEWA 85
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 45.1 bits (106), Expect = 3e-07
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKA- 119
+++ GL+ +TT +D+ + Q+G + + DKTTN+ RG+GFV FES +
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIH 61
Query: 120 ---LQDKGIHAQMA 130
+ +K + + A
Sbjct: 62 FHEINNKMVECKKA 75
Score = 36.2 bits (83), Expect = 4e-04
Identities = 13/77 (16%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 140 LYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNT-SKGVGFARLESKDKCDQMIQLF 198
+++ L +N D++ ++ V ++ D +G GF ES+D +++ ++
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI- 60
Query: 199 NGSTLPGSKEPLLVKFA 215
+ + + K A
Sbjct: 61 HFHEINNK--MVECKKA 75
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 45.1 bits (106), Expect = 3e-07
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 6/63 (9%)
Query: 61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKAL 120
LYI L+ T DL + + GY FVD+ +A+ A++ L
Sbjct: 4 LYIGNLSPAVTADDLRQLFGDRKLPL------AGQVLLKSGYAFVDYPDQNWAIRAIETL 57
Query: 121 QDK 123
K
Sbjct: 58 SGK 60
Score = 42.8 bits (100), Expect = 2e-06
Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 6/78 (7%)
Query: 140 LYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFN 199
LYI NL DL L ++ ++L G F ++ + I+ +
Sbjct: 4 LYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLK-----SGYAFVDYPDQNWAIRAIETLS 58
Query: 200 GSTLPGSKEPLLVKFADS 217
G K + V ++ S
Sbjct: 59 GKVELHGK-IMEVDYSVS 75
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 44.3 bits (104), Expect = 5e-07
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVK 118
+++ G+ +DT + L + QYG I + + D+ + K RG+ FV F+ V
Sbjct: 5 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 62
Score = 35.9 bits (82), Expect = 7e-04
Identities = 13/77 (16%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
Query: 140 LYIANLPLNFKECDLESLLAKYVTVVSTRILRD-NNNTSKGVGFARLESKDKCDQMIQLF 198
+++ + + +E L +Y + I+ D + +G F + D D+++
Sbjct: 5 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ- 63
Query: 199 NGSTLPGSKEPLLVKFA 215
T+ G V+ A
Sbjct: 64 KYHTVNGH--NCEVRKA 78
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 44.0 bits (103), Expect = 1e-06
Identities = 9/62 (14%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 61 LYIRGLTQDTTDKDLINMCSQYGPIIS-----TKAILDKTTNKCRGYGFVDFESGGYALA 115
LY+ + T++ +++ + + +L N+ + + F++F S
Sbjct: 4 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQ 63
Query: 116 AV 117
A+
Sbjct: 64 AM 65
Score = 35.5 bits (81), Expect = 0.001
Identities = 12/73 (16%), Positives = 22/73 (30%), Gaps = 5/73 (6%)
Query: 140 LYIANLPLNFKECDLESLLAKYVTVVSTRILRD----NNNTSKGVGFARLESKDKCD-QM 194
LY+ N+P E + + + ++ FA LE + +
Sbjct: 4 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQ 63
Query: 195 IQLFNGSTLPGSK 207
F+G G
Sbjct: 64 AMAFDGIIFQGQS 76
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 43.9 bits (103), Expect = 2e-06
Identities = 11/79 (13%), Positives = 24/79 (30%), Gaps = 4/79 (5%)
Query: 53 PEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGY 112
Q + + L T L + S++G ++ T + + +
Sbjct: 2 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKII----TFTKNNQFQALLQYADPVS 57
Query: 113 ALAAVKALQDKGIHAQMAR 131
A A +L + I+
Sbjct: 58 AQHAKLSLDGQNIYNACCT 76
Score = 43.9 bits (103), Expect = 2e-06
Identities = 10/78 (12%), Positives = 24/78 (30%), Gaps = 3/78 (3%)
Query: 138 TNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQL 197
+ + NL L + +K+ TV+ N ++ +
Sbjct: 8 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLS 64
Query: 198 FNGSTLPGSKEPLLVKFA 215
+G + + L + F+
Sbjct: 65 LDGQNIYNACCTLRIDFS 82
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 43.7 bits (102), Expect = 2e-06
Identities = 10/86 (11%), Positives = 26/86 (30%), Gaps = 4/86 (4%)
Query: 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAA 116
+K +I + T D++ + +L + G V F++ A +
Sbjct: 7 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKS 66
Query: 117 VKA----LQDKGIHAQMARQQEQDPT 138
+ L + + ++
Sbjct: 67 ERLHRKKLNGREAFVHVVTLEDMREI 92
Score = 33.3 bits (75), Expect = 0.008
Identities = 16/98 (16%), Positives = 31/98 (31%), Gaps = 4/98 (4%)
Query: 138 TNLYIANLPLNFKECDLESLLAKYVTV-VSTRILRDNNNTSKGVGFARLESKDKCDQMIQ 196
+I N+P + + D+ L + +L DNN G + +++D + +
Sbjct: 9 VCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSER 68
Query: 197 LFNGSTLPGSKEPLLVKFADSGLKKRGAGAGGPNIYRG 234
L + L G V + G
Sbjct: 69 L-HRKKLNG--REAFVHVVTLEDMREIEKNPPAQGKSG 103
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 43.6 bits (102), Expect = 2e-06
Identities = 14/101 (13%), Positives = 28/101 (27%), Gaps = 15/101 (14%)
Query: 45 GSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGF 104
GS G+ L ++ T ++ Y + + K
Sbjct: 1 GSSGSSG----LIACVANDDVFSESETRAKFESLFRTYDKDTTFQY------FKSFKRVR 50
Query: 105 VDFESGGYALAAVKALQ-----DKGIHAQMARQQEQDPTNL 140
++F + A A L K + A+ ++L
Sbjct: 51 INFSNPLSAADARLRLHKTEFLGKEMKLYFAQTLHIGSSHL 91
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 43.3 bits (101), Expect = 2e-06
Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 50 PTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFES 109
P+ + ++IR L+ D+ ++ L + Q+G + + +L T +G F F +
Sbjct: 2 PSDVTE--GKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMT 59
Query: 110 GGYALAAVKALQDK 123
A + A +
Sbjct: 60 QEAAQKCLAAASLE 73
Score = 36.7 bits (84), Expect = 5e-04
Identities = 17/95 (17%), Positives = 39/95 (41%), Gaps = 7/95 (7%)
Query: 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNT-SKGVGFARLESKDKCDQ 193
+ ++I NL + +E L +L ++ + R++ + SKG FA+ +++ +
Sbjct: 6 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQK 65
Query: 194 MIQLFNGSTLPGSKE----PLLVKFADSGLKKRGA 224
+ + G + L V A + + A
Sbjct: 66 CLAAASLEAEGGGLKLDGRQLKVDLAVT--RDEAA 98
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 42.7 bits (100), Expect = 3e-06
Identities = 12/86 (13%), Positives = 35/86 (40%), Gaps = 9/86 (10%)
Query: 137 PTN-LYIANLPLNFKECDLE----SLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKC 191
P + +YI NL K+ +L+ ++ +++ ++ + + +G F +
Sbjct: 2 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILV--SRSLKMRGQAFVIFKEVSSA 59
Query: 192 DQMIQLFNGSTLPGSKEPLLVKFADS 217
++ G P+ +++A +
Sbjct: 60 TNALRSMQGFPFYDK--PMRIQYAKT 83
Score = 38.9 bits (90), Expect = 6e-05
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 57 SKTNLYIRGLTQDTTDKDLINMCSQY-GPIISTKAILDKTTNKCRGYGFVDFESGGYALA 115
+ T +YI L + +L IL + K RG FV F+ A
Sbjct: 3 NHT-IYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATN 61
Query: 116 AVKALQDKGIH 126
A++++Q +
Sbjct: 62 ALRSMQGFPFY 72
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 42.4 bits (99), Expect = 3e-06
Identities = 18/68 (26%), Positives = 33/68 (48%)
Query: 59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVK 118
L++ + ++ + ++ YG I + LD+ T +GY V++E+ ALAA +
Sbjct: 8 WILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKE 67
Query: 119 ALQDKGIH 126
AL I
Sbjct: 68 ALNGAEIM 75
Score = 36.6 bits (84), Expect = 4e-04
Identities = 14/93 (15%), Positives = 35/93 (37%), Gaps = 7/93 (7%)
Query: 132 QQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNN-TSKGVGFARLESKDK 190
Q+ + L++ ++ +E +++ Y + + + D SKG E+ +
Sbjct: 2 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQ 61
Query: 191 CDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRG 223
+ NG+ + G + V + +G
Sbjct: 62 ALAAKEALNGAEIMGQ--TIQVDWC----FVKG 88
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 42.3 bits (99), Expect = 4e-06
Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 58 KTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAV 117
++ L++ L D T++++ + +YG +K +G+GF+ E+ A A
Sbjct: 8 RSRLFVGNLPPDITEEEMRKLFEKYGKAGEVF------IHKDKGFGFIRLETRTLAEIAK 61
Query: 118 KALQDKGIH 126
L + +
Sbjct: 62 VELDNMPLR 70
Score = 37.6 bits (87), Expect = 2e-04
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Query: 138 TNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQL 197
+ L++ NLP + E ++ L KY I +D GF RLE++ +
Sbjct: 9 SRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKG-----FGFIRLETRTLAEIAKVE 63
Query: 198 FNGSTLPGSKEPLLVKFADSG 218
+ L G L V+FA
Sbjct: 64 LDNMPLRGK--QLRVRFACHS 82
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 42.9 bits (100), Expect = 4e-06
Identities = 15/89 (16%), Positives = 24/89 (26%), Gaps = 10/89 (11%)
Query: 43 HNGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGY 102
H+GS G + L T +DL + S +G I +
Sbjct: 1 HHGSLEEKIGC-----LLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIIL-- 53
Query: 103 GFVDFESGGYALAAVKALQDKGIHAQMAR 131
E AL K + + +
Sbjct: 54 ---FKEKAKEALGKAKDANNGNLQLRNKE 79
Score = 26.3 bits (57), Expect = 2.3
Identities = 11/86 (12%), Positives = 25/86 (29%), Gaps = 6/86 (6%)
Query: 138 TNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKC-DQMIQ 196
+ +L DL L + + + +R G + K K +
Sbjct: 12 LLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA-----KEGIILFKEKAKEALGKAK 66
Query: 197 LFNGSTLPGSKEPLLVKFADSGLKKR 222
N L + + + + ++K
Sbjct: 67 DANNGNLQLRNKEVTWEVLEGEVEKE 92
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 42.0 bits (98), Expect = 5e-06
Identities = 16/85 (18%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Query: 132 QQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKC 191
+ + ++YI P + D++ L V++ ++ R + KG F +S +
Sbjct: 1 KNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESA 60
Query: 192 DQMIQLFNGSTLPGSKEPLLVKFAD 216
+ ++ G + LL+ F D
Sbjct: 61 KKFVET-PGQKYKETD--LLILFKD 82
Score = 39.7 bits (92), Expect = 3e-05
Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 5/83 (6%)
Query: 54 EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYA 113
+ ++YI+G D T D+ G +++ + +G FV F+S A
Sbjct: 2 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR-RTLHKAFKGSIFVVFDSIESA 60
Query: 114 LAAVKA----LQDKGIHAQMARQ 132
V+ ++ +
Sbjct: 61 KKFVETPGQKYKETDLLILFKDD 83
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 41.6 bits (97), Expect = 7e-06
Identities = 14/92 (15%), Positives = 36/92 (39%), Gaps = 6/92 (6%)
Query: 132 QQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKC 191
++ + L NL N E +L+ + + + + SKG+ + +S+
Sbjct: 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQ----DGKSKGIAYIEFKSEADA 66
Query: 192 DQMIQLFNGSTLPGSKEPLLVKFADSGLKKRG 223
++ ++ G+ + G + + + RG
Sbjct: 67 EKNLEEKQGAEIDGR--SVSLYYTGEKGGTRG 96
Score = 39.6 bits (92), Expect = 4e-05
Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 5/68 (7%)
Query: 59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVK 118
L + L+ + T+ +L + I K +G +++F+S A ++
Sbjct: 17 RTLLAKNLSFNITEDELKEVFEDALEIRL-----VSQDGKSKGIAYIEFKSEADAEKNLE 71
Query: 119 ALQDKGIH 126
Q I
Sbjct: 72 EKQGAEID 79
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 41.3 bits (96), Expect = 8e-06
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 140 LYIANLPLNFKECDLESLLAKYVTVV-STRILRDNNNTSKGVGFARLESKDKCDQMIQLF 198
L++ N P ++ + ++ LL V S R+ NTS+ + + SK+ ++
Sbjct: 4 LWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKL 63
Query: 199 NGSTLPGSKEPLLVKFAD 216
NG + G L+ K ++
Sbjct: 64 NGLKIEGY--TLVTKVSN 79
Score = 40.5 bits (94), Expect = 2e-05
Identities = 11/77 (14%), Positives = 27/77 (35%)
Query: 61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKAL 120
L++ T +++ ++ + + + N R + ++D S A V+ L
Sbjct: 4 LWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKL 63
Query: 121 QDKGIHAQMARQQEQDP 137
I + +P
Sbjct: 64 NGLKIEGYTLVTKVSNP 80
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 41.3 bits (96), Expect = 1e-05
Identities = 18/70 (25%), Positives = 42/70 (60%)
Query: 57 SKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAA 116
S ++++ + + T++ L ++ S+ GP++S + + D+ T K +GYGF +++ AL+A
Sbjct: 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSA 66
Query: 117 VKALQDKGIH 126
++ L +
Sbjct: 67 MRNLNGREFS 76
Score = 39.4 bits (91), Expect = 6e-05
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 6/102 (5%)
Query: 134 EQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNN-TSKGVGFARLESKDKCD 192
++ ++++ N+P E L+ + ++ VVS R++ D KG GF + ++
Sbjct: 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 64
Query: 193 QMIQLFNGSTLPGSKEPLLVKFADSGLKK---RGAGAGGPNI 231
++ NG G L V A S K + G G P I
Sbjct: 65 SAMRNLNGREFSGR--ALRVDNAASEKNKEELKSLGTGAPVI 104
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 41.2 bits (96), Expect = 1e-05
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 45 GSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGF 104
GS G+ L++R L+ ++++DL + S YGP+ +D T K +G+ F
Sbjct: 1 GSSGSS------GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAF 54
Query: 105 VDFESGGYALAAVKALQDKGIH 126
V F +A+ A + +
Sbjct: 55 VTFMFPEHAVKAYAEVDGQVFQ 76
Score = 35.8 bits (82), Expect = 9e-04
Identities = 21/96 (21%), Positives = 30/96 (31%), Gaps = 6/96 (6%)
Query: 135 QDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRD-NNNTSKGVGFARLESKDKCDQ 193
L++ NL E DLE L + Y + D KG F + +
Sbjct: 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVK 65
Query: 194 MIQLFNGSTLPGSKEPLLVKFADSGLKKRGAGAGGP 229
+G G L V + K+ A GP
Sbjct: 66 AYAEVDGQVFQGR--MLHVLPSTI---KKEASQSGP 96
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 40.3 bits (93), Expect = 2e-05
Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 5/84 (5%)
Query: 52 GPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGG 111
G E + NL+I L + + +L S+ + + T R +G+VDFES
Sbjct: 7 GSESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVR-TGTNRKFGYVDFESAE 65
Query: 112 YALAAV----KALQDKGIHAQMAR 131
A+ + I + +
Sbjct: 66 DLEKALELTGLKVFGNEIKLEKPK 89
Score = 37.6 bits (86), Expect = 2e-04
Identities = 15/90 (16%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
Query: 128 QMARQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLES 187
+ + P NL+I NL N +L+ +++ ++ T++ G+ ES
Sbjct: 4 MVEGSESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFES 63
Query: 188 KDKCDQMIQLFNGSTLPGSKEPLLVKFADS 217
+ ++ ++L G + G+ + ++
Sbjct: 64 AEDLEKALEL-TGLKVFGN--EIKLEKPKG 90
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 40.6 bits (94), Expect = 2e-05
Identities = 17/96 (17%), Positives = 37/96 (38%), Gaps = 5/96 (5%)
Query: 45 GSPGT-PTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYG 103
GS G+ P+ + + +RGL + ++++ S + + + + G
Sbjct: 1 GSSGSSGNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEA 60
Query: 104 FVDFESGGYALAAV----KALQDKGIHAQMARQQEQ 135
FV F S A A+ + + + I + + E
Sbjct: 61 FVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 96
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 39.9 bits (93), Expect = 3e-05
Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 5/81 (6%)
Query: 136 DPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMI 195
P + L LN DL +K+ + + + GV ++ D I
Sbjct: 18 HPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHP---DGVASVSFRDPEEADYCI 74
Query: 196 QLFNGSTLPGSKEPLLVKFAD 216
Q +G G + + D
Sbjct: 75 QTLDGRWFGGR--QITAQAWD 93
Score = 38.0 bits (88), Expect = 2e-04
Identities = 15/68 (22%), Positives = 21/68 (30%), Gaps = 4/68 (5%)
Query: 74 DLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKALQDKGIHAQMARQQ 133
DL CS++G I G V F A ++ L + + Q
Sbjct: 35 DLRVECSKFGQIRKLLLF----DRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQ 90
Query: 134 EQDPTNLY 141
D T Y
Sbjct: 91 AWDGTTDY 98
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 39.8 bits (92), Expect = 4e-05
Identities = 12/100 (12%), Positives = 32/100 (32%), Gaps = 6/100 (6%)
Query: 132 QQEQDPTN-LYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDK 190
+ + +++ L + E DL L K+ T+ ++ E+ D
Sbjct: 9 HHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQ-----ALVEFENIDS 63
Query: 191 CDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRGAGAGGPN 230
+ + + + + ++ S R +G +
Sbjct: 64 AKECVTFAADVPVYIAGQQAFFNYSTSKRITRPGNSGPSS 103
Score = 39.4 bits (91), Expect = 6e-05
Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 7/88 (7%)
Query: 45 GSPGTPTGPEQLSKTN-LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYG 103
GS G+ ++S + +++RGL + + DL+ ++G I +
Sbjct: 1 GSSGSSGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTIC------YVMMMPFKRQA 54
Query: 104 FVDFESGGYALAAVKALQDKGIHAQMAR 131
V+FE+ A V D ++ +
Sbjct: 55 LVEFENIDSAKECVTFAADVPVYIAGQQ 82
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 39.3 bits (91), Expect = 6e-05
Identities = 18/81 (22%), Positives = 26/81 (32%), Gaps = 5/81 (6%)
Query: 138 TNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQL 197
T L++ L N L ++ I ++ + + ES D
Sbjct: 18 TRLWVGGLGPNTSLAALAREFDRF-----GSIRTIDHVKGDSFAYIQYESLDAAQAACAK 72
Query: 198 FNGSTLPGSKEPLLVKFADSG 218
G L G L V FA SG
Sbjct: 73 MRGFPLGGPDRRLRVDFAKSG 93
Score = 33.1 bits (75), Expect = 0.009
Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 11/86 (12%)
Query: 45 GSPGTPT----GPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCR 100
GS G+ G + L++ GL +T+ L ++G I + K
Sbjct: 1 GSSGSSGKIGYGKANPTTR-LWVGGLGPNTSLAALAREFDRFGSIRTID------HVKGD 53
Query: 101 GYGFVDFESGGYALAAVKALQDKGIH 126
+ ++ +ES A AA ++ +
Sbjct: 54 SFAYIQYESLDAAQAACAKMRGFPLG 79
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 38.3 bits (88), Expect = 8e-05
Identities = 15/85 (17%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Query: 133 QEQDPTN--LYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDK 190
Q + P N L++ NLP E L L ++ R++ + ++ + F ++ +
Sbjct: 2 QTEQPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIA----FVEFTTELQ 57
Query: 191 CDQMIQLFNGSTLPGSKEPLLVKFA 215
+ + G + + + + FA
Sbjct: 58 SNAAKEALQGFKITPTH-AMKITFA 81
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 38.6 bits (89), Expect = 1e-04
Identities = 21/100 (21%), Positives = 33/100 (33%), Gaps = 4/100 (4%)
Query: 130 ARQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRI-LRDNNNTSKGVGFARLESK 188
+R + P ++ NLP + E ++ N KG G+A E
Sbjct: 8 SRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDL 67
Query: 189 DKCDQMIQLFNGSTLPGSKEPLLVKFADSGLKKRGAGAGG 228
D + L N +L + V AD K + G
Sbjct: 68 DSLLSALSL-NEESLGNK--RIRVDVADQAQDKDSGPSSG 104
Score = 36.2 bits (83), Expect = 7e-04
Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 6/100 (6%)
Query: 44 NGSPGTPTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYG 103
+GS G+ P+ T ++ L D T++ + + +G+G
Sbjct: 3 SGSSGSRL-PKSPPYT-AFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFG 60
Query: 104 FVDFESGGYALAAVKA----LQDKGIHAQMARQQEQDPTN 139
+ +FE L+A+ L +K I +A Q + +
Sbjct: 61 YAEFEDLDSLLSALSLNEESLGNKRIRVDVADQAQDKDSG 100
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 37.8 bits (87), Expect = 2e-04
Identities = 10/76 (13%), Positives = 22/76 (28%), Gaps = 8/76 (10%)
Query: 52 GPEQLSKTNLYIRGLTQD-TTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESG 110
G + + ++I + L+ + +G I + F++ +
Sbjct: 3 GRVETRRV-VHIMDFQRGKNLRYQLLQLVEPFGVISNHL------ILNKINEAFIEMATT 55
Query: 111 GYALAAVKALQDKGIH 126
A AAV
Sbjct: 56 EDAQAAVDYYTTTPAL 71
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 37.0 bits (85), Expect = 3e-04
Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 137 PTN-LYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMI 195
P+ L+++N+P + E DL+ L + VV + ++ S ++ Q +
Sbjct: 9 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMA---LIQMGSVEEAVQAL 65
Query: 196 QLFNGSTLPGSKEPLLVKFADS 217
+ L + L V F+ S
Sbjct: 66 IDLHNHDLGENH-HLRVSFSKS 86
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 75
Score = 36.0 bits (82), Expect = 5e-04
Identities = 7/51 (13%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Query: 59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFES 109
T + ++ L + + GPI + + K + ++F
Sbjct: 1 TTVLVKNLPKSYNQNKVYKYFKHCGPI--IHVDVADSLKKNFRFARIEFAR 49
Score = 35.6 bits (81), Expect = 6e-04
Identities = 8/60 (13%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
Query: 138 TNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQL 197
T + + NLP ++ + + ++ + + FAR+E + +
Sbjct: 1 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFR---FARIEFARYDGALAAI 57
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 36.3 bits (83), Expect = 6e-04
Identities = 9/68 (13%), Positives = 25/68 (36%), Gaps = 7/68 (10%)
Query: 59 TNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVK 118
+ + ++ L QD+ +++ ++ Y ++ + FV +G A A++
Sbjct: 6 SGILVKNLPQDSNCQEVHDLLKDYDLK-------YCYVDRNKRTAFVTLLNGEQAQNAIQ 58
Query: 119 ALQDKGIH 126
Sbjct: 59 MFHQYSFR 66
Score = 35.9 bits (82), Expect = 7e-04
Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 8/93 (8%)
Query: 136 DPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMI 195
+ + + NLP + ++ LL Y + +K F L + ++ I
Sbjct: 4 GSSGILVKNLPQDSNCQEVHDLLKDYDLK------YCYVDRNKRTAFVTLLNGEQAQNAI 57
Query: 196 QLFNGSTLPGSKEPLLVKFADSGLKKRGAGAGG 228
Q+F+ + G L+V+ + + G
Sbjct: 58 QMFHQYSFRGK--DLIVQLQPTDALLCSGPSSG 88
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 86
Score = 34.3 bits (78), Expect = 0.002
Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 6/84 (7%)
Query: 56 LSKTNLYIRGLTQDTTDKDLINM--CSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYA 113
L + IR L+ + D++L+ K + F+ FE+ A
Sbjct: 2 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSA 61
Query: 114 LAAVKA----LQDKGIHAQMARQQ 133
A++ L ++ I +A ++
Sbjct: 62 ERALQMNRSLLGNREISVSLADKK 85
Score = 33.6 bits (76), Expect = 0.005
Identities = 15/83 (18%), Positives = 25/83 (30%), Gaps = 4/83 (4%)
Query: 136 DPTNLYIANLPLNF-KECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCD-Q 193
+ + I NL E L + ++ I S A + ++K +
Sbjct: 3 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAE 62
Query: 194 MIQLFNGSTLPGSKEPLLVKFAD 216
N S L + V AD
Sbjct: 63 RALQMNRSLLGNR--EISVSLAD 83
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 34.4 bits (78), Expect = 0.003
Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 8/83 (9%)
Query: 45 GSPGTPTGP-EQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYG 103
GS G+ GP + S + + GL + +DL + + G + + G G
Sbjct: 1 GSSGSSGGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDV-------CYADVQKDGMG 53
Query: 104 FVDFESGGYALAAVKALQDKGIH 126
V++ A++ L D
Sbjct: 54 MVEYLRKEDMEYALRKLDDTKFR 76
Score = 32.8 bits (74), Expect = 0.011
Identities = 9/95 (9%), Positives = 29/95 (30%), Gaps = 8/95 (8%)
Query: 134 EQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQ 193
+ + ++ LP + DL+ + + V + +D G K+ +
Sbjct: 12 RRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGM------GMVEYLRKEDMEY 65
Query: 194 MIQLFNGSTLPGSKEPLLVKFADSGLKKRGAGAGG 228
++ + + + ++ + G
Sbjct: 66 ALRKLDDTKFRS--HEGETSYIRVYPERSSGPSSG 98
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 111
Score = 34.5 bits (78), Expect = 0.004
Identities = 9/90 (10%), Positives = 26/90 (28%), Gaps = 7/90 (7%)
Query: 133 QEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCD 192
+ T + NLP +++ +++ ++ +
Sbjct: 6 SGRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVL-----LPEGGITAIVEFLEPLEAR 60
Query: 193 QMIQLFNGSTLPGSKEPLLVKFADSGLKKR 222
+ + S PL +++A G+
Sbjct: 61 KAFRHLAYSKFHHV--PLYLEWAPIGVFGA 88
Score = 33.0 bits (74), Expect = 0.010
Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 6/73 (8%)
Query: 51 TGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESG 110
+G SKT + + L T ++ S++G + + V+F
Sbjct: 3 SGSSGRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVL------LPEGGITAIVEFLEP 56
Query: 111 GYALAAVKALQDK 123
A A + L
Sbjct: 57 LEARKAFRHLAYS 69
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 33.6 bits (76), Expect = 0.005
Identities = 7/74 (9%), Positives = 20/74 (27%), Gaps = 7/74 (9%)
Query: 139 NLYIANLPLNFKECDL---ESLLAKYVTVVSTRILRD----NNNTSKGVGFARLESKDKC 191
+++ L + ++ K+ + I + + +
Sbjct: 10 LVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDA 69
Query: 192 DQMIQLFNGSTLPG 205
+ IQ N + G
Sbjct: 70 LRAIQCVNNVVVDG 83
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 33.0 bits (74), Expect = 0.007
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 8/78 (10%)
Query: 140 LYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFN 199
+ I LP + ++ LL+ Y + + KG F L + ++ + I F+
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDY------ELKYCFVDKYKGTAFVTLLNGEQAEAAINTFH 54
Query: 200 GSTLPGSKEPLLVKFADS 217
S L L V+ +
Sbjct: 55 QSRLRER--ELSVQLQPT 70
Score = 30.7 bits (68), Expect = 0.034
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Query: 61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAVKAL 120
+ IRGL D T++++ ++ S Y +K +G FV +G A AA+
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDYELK-------YCFVDKYKGTAFVTLLNGEQAEAAINTF 53
Query: 121 QDKGIH 126
+
Sbjct: 54 HQSRLR 59
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 33.0 bits (75), Expect = 0.007
Identities = 8/64 (12%), Positives = 19/64 (29%), Gaps = 7/64 (10%)
Query: 55 QLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYAL 114
L T + + G Q + L+ + + + + ++S A
Sbjct: 1 HLDDTWVTVFGFPQASASYILLQFAQYGNIL-------KHVMSNTGNWMHIRYQSKLQAR 53
Query: 115 AAVK 118
A+
Sbjct: 54 KALS 57
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 31.3 bits (70), Expect = 0.043
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 45 GSPGT-PTGPEQLSKTNLYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYG 103
GS G+ + + + +++RGL T+ D+ N S P+ I + G
Sbjct: 1 GSSGSSGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMR--VHIEIGPDGRVTGEA 58
Query: 104 FVDFESGGYALAAVK 118
V+F + A+AA+
Sbjct: 59 DVEFATHEDAVAAMA 73
Score = 28.2 bits (62), Expect = 0.52
Identities = 8/96 (8%), Positives = 26/96 (27%), Gaps = 4/96 (4%)
Query: 133 QEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCD 192
Q +++ LP E D+ + + + I + G + +
Sbjct: 11 QSTTGHCVHMRGLPYRATENDIYNFFSPL-NPMRVHIEIGPDGRVTGEADVEFATHEDAV 69
Query: 193 QMIQLFNGSTLPGSKEPLLVKFADSGLKKRGAGAGG 228
+ + + + + + + + G
Sbjct: 70 AAMAK-DKANMQHR--YVELFLNSTAGTSGSGPSSG 102
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 30.6 bits (68), Expect = 0.048
Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 6/79 (7%)
Query: 61 LYIRGLTQDTTDKDLINMCSQYGPIISTKAILDKTTNKCRGYGFVDFESGGYALAAV--K 118
+ + GL + +DL + + G + D + FV E YA+ +
Sbjct: 3 VVVSGLPPSGSWQDLKDHMREAGDVCYA----DVYRDGTGVVEFVRKEDMTYAVRKLDNT 58
Query: 119 ALQDKGIHAQMARQQEQDP 137
+ R + P
Sbjct: 59 KFRSHEGETAYIRVKVDGP 77
Score = 28.3 bits (62), Expect = 0.35
Identities = 8/66 (12%), Positives = 21/66 (31%), Gaps = 6/66 (9%)
Query: 140 LYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSKGVGFARLESKDKCDQMIQLFN 199
+ ++ LP + DL+ + + V + RD K+ ++ +
Sbjct: 3 VVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTG------VVEFVRKEDMTYAVRKLD 56
Query: 200 GSTLPG 205
+
Sbjct: 57 NTKFRS 62
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 27.9 bits (61), Expect = 0.67
Identities = 9/71 (12%), Positives = 18/71 (25%), Gaps = 4/71 (5%)
Query: 130 ARQQEQDPTNLYIANLPLNFKECDLESLLAKYVTVVSTRILRDNNNTSK----GVGFARL 185
+R + +Y+ LP + + K V + + N V F
Sbjct: 11 SRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNE 70
Query: 186 ESKDKCDQMIQ 196
+
Sbjct: 71 ADYKAALCRHK 81
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.131 0.389
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,076,032
Number of extensions: 47814
Number of successful extensions: 237
Number of sequences better than 10.0: 1
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 153
Length of query: 305
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 220
Effective length of database: 1,240,546
Effective search space: 272920120
Effective search space used: 272920120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.8 bits)