BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4087
(249 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GB8|A Chain A, Crystal Structure Of Crm1SNURPORTIN-1 Complex
Length = 1071
Score = 361 bits (927), Expect = e-100, Method: Compositional matrix adjust.
Identities = 174/237 (73%), Positives = 195/237 (82%), Gaps = 7/237 (2%)
Query: 8 EWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSH 67
E ALHY++L+SEV+E EIFKICLEYWN L+++LYRESP+ +SAS P++ + S
Sbjct: 345 ETLMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSAS--PLL----SGSQ 398
Query: 68 TMDEAVARRQFYAPVLTKIRYIMVSRMAKPXXXXXXXXXXXXXXREFMKDTDSINLYKNM 127
D RRQ Y P+L K+R +MVSRMAKP REFMKDTDSINLYKNM
Sbjct: 399 HFD-VPPRRQLYLPMLFKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNM 457
Query: 128 RETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL 187
RETLVYLTHL+Y DTE++MT+KL QVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL
Sbjct: 458 RETLVYLTHLDYVDTERIMTEKLHNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL 517
Query: 188 VTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH 244
VTVIKDLLGLCEQK+GKDNKAIIASNIMY+VGQYPRFLRAHWKFLKTVVNKLFEFMH
Sbjct: 518 VTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMH 574
>pdb|3GJX|A Chain A, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|D Chain D, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3NBY|A Chain A, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|D Chain D, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|A Chain A, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|D Chain D, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|A Chain A, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|D Chain D, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC1|A Chain A, Crystal Structure Of The Crm1-Rangtp Complex
Length = 1073
Score = 361 bits (926), Expect = e-100, Method: Compositional matrix adjust.
Identities = 175/241 (72%), Positives = 193/241 (80%), Gaps = 15/241 (6%)
Query: 8 EWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSAS----GLPIMDLPN 63
E ALHY++L+SEV+E EIFKICLEYWN L+++LYRESP+ +SAS G D+P
Sbjct: 347 EALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIP- 405
Query: 64 NKSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKPXXXXXXXXXXXXXXREFMKDTDSINL 123
RRQ Y VL+K+R +MVSRMAKP REFMKDTDSINL
Sbjct: 406 ----------PRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINL 455
Query: 124 YKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDE 183
YKNMRETLVYLTHL+Y DTE +MT+KLQ QVNGTEWSWKNLNTLCWAIGSISGAMHEEDE
Sbjct: 456 YKNMRETLVYLTHLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDE 515
Query: 184 KRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFM 243
KRFLVTVIKDLLGLCEQK+GKDNKAIIASNIMY+VGQYPRFLRAHWKFLKTVVNKLFEFM
Sbjct: 516 KRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFM 575
Query: 244 H 244
H
Sbjct: 576 H 576
>pdb|4FGV|A Chain A, Crystal Structure Of Free Crm1 (crystal Form 1)
pdb|4HZK|A Chain A, Crystal Structure Of Free Crm1 (crystal Form 2)
pdb|4HZK|B Chain B, Crystal Structure Of Free Crm1 (crystal Form 2)
Length = 1086
Score = 275 bits (702), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 137/254 (53%), Positives = 172/254 (67%), Gaps = 21/254 (8%)
Query: 4 LESDEWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDL-- 61
L + ++ T YL+ IS++D+ EIFKICL+YW L +LY E LP+ D+
Sbjct: 335 LPNRDFLTHGHFYLIRISQIDDREIFKICLDYWLKLVQELYEE------MQSLPLNDMSS 388
Query: 62 -----------PNNKSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKPXXXXXXXXXXXXX 110
PN ++ R+ Y VL+ +R +M+ +M +P
Sbjct: 389 MGLGMMSGGGAPN--PALLEHYPLRKHKYKEVLSNLRVVMIEKMVRPEEVLIVENDEGEI 446
Query: 111 XREFMKDTDSINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWA 170
REF+KDTDS+ LYK +RE LVYLTHL+ D EQ+MT+KL +QV+G+EWSW N N LCWA
Sbjct: 447 VREFVKDTDSVQLYKTIRECLVYLTHLDVVDMEQIMTEKLARQVDGSEWSWHNCNVLCWA 506
Query: 171 IGSISGAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWK 230
IGSIS AM+EE EKRFLVTVIKDLLGL E K+GKDNKA++ASNIMY+VGQYPRFL+AHWK
Sbjct: 507 IGSISMAMNEETEKRFLVTVIKDLLGLTEMKRGKDNKAVVASNIMYIVGQYPRFLKAHWK 566
Query: 231 FLKTVVNKLFEFMH 244
FLKTVVNKLFEFMH
Sbjct: 567 FLKTVVNKLFEFMH 580
>pdb|4HB4|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 1023
Score = 252 bits (644), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 122/245 (49%), Positives = 164/245 (66%), Gaps = 30/245 (12%)
Query: 4 LESDE----WFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIM 59
LESDE A YL+ +S+++E E+FK L+YW+ L +DL+ E P+
Sbjct: 332 LESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYE----------PL- 380
Query: 60 DLPNNKSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKPXXXXXXXXXXXXXXREFMKDTD 119
++ Y + +++R +++ M +P REF+K++D
Sbjct: 381 ---------------KKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESD 425
Query: 120 SINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMH 179
+I LYK+ RE LVYLTHLN DTE++M KL +Q++G+EWSW N+NTL WAIGSISG M
Sbjct: 426 TIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMS 485
Query: 180 EEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKL 239
E+ EKRF+VTVIKDLLGLCEQK+GKDNKA++AS+IMYVVGQYPRFL+AHW FL+TV+ KL
Sbjct: 486 EDTEKRFVVTVIKDLLGLCEQKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKL 545
Query: 240 FEFMH 244
FEFMH
Sbjct: 546 FEFMH 550
>pdb|4GPT|C Chain C, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|C Chain C, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
Length = 1060
Score = 250 bits (639), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 122/256 (47%), Positives = 170/256 (66%), Gaps = 15/256 (5%)
Query: 4 LESDE----WFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIM 59
LESDE A YL+ +S+++E E+FK L+YW+ L +DL+ E + + P++
Sbjct: 332 LESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEVQRLPATEMSPLI 391
Query: 60 DLP------NNKSHTMDEAVARR-----QFYAPVLTKIRYIMVSRMAKPXXXXXXXXXXX 108
L + S ++ +R Y + +++R +++ M +P
Sbjct: 392 QLSVGSQAISTGSGALNPEYMKRFPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEG 451
Query: 109 XXXREFMKDTDSINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLC 168
REF+K++D+I LYK+ RE LVYLTHLN DTE++M KL +Q++G+EWSW N+NTL
Sbjct: 452 EIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLS 511
Query: 169 WAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAH 228
WAIGSISG M E+ EKRF+VTVIKDLL LC +K+GKDNKA++AS+IMYVVGQYPRFL+AH
Sbjct: 512 WAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAH 571
Query: 229 WKFLKTVVNKLFEFMH 244
W FL+TV+ KLFEFMH
Sbjct: 572 WNFLRTVILKLFEFMH 587
>pdb|4HAT|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|C Chain C, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
Length = 1023
Score = 244 bits (624), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 119/245 (48%), Positives = 162/245 (66%), Gaps = 30/245 (12%)
Query: 4 LESDE----WFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIM 59
LESDE A YL+ +S+++E E+FK L+YW+ L +DL+ E P+
Sbjct: 332 LESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYE----------PL- 380
Query: 60 DLPNNKSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKPXXXXXXXXXXXXXXREFMKDTD 119
++ Y + +++R +++ M +P REF+K++D
Sbjct: 381 ---------------KKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESD 425
Query: 120 SINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMH 179
+I LYK+ RE LVYLTHLN DTE++M KL +Q++G+EWSW N+NTL WAIGSISG M
Sbjct: 426 TIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMS 485
Query: 180 EEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKL 239
E+ EKRF+VTVIKDLL LC +K+GKDNKA++AS+IMYVVGQYPRFL+AHW FL+TV+ KL
Sbjct: 486 EDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKL 545
Query: 240 FEFMH 244
FEFMH
Sbjct: 546 FEFMH 550
>pdb|4HB2|C Chain C, Crystal Structure Of Crm1-ran-ranbp1
Length = 1023
Score = 244 bits (624), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 119/245 (48%), Positives = 162/245 (66%), Gaps = 30/245 (12%)
Query: 4 LESDE----WFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIM 59
LESDE A YL+ +S+++E E+FK L+YW+ L +DL+ E P+
Sbjct: 332 LESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYE----------PL- 380
Query: 60 DLPNNKSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKPXXXXXXXXXXXXXXREFMKDTD 119
++ Y + +++R +++ M +P REF+K++D
Sbjct: 381 ---------------KKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESD 425
Query: 120 SINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMH 179
+I LYK+ RE LVYLTHLN DTE++M KL +Q++G+EWSW N+NTL WAIGSISG M
Sbjct: 426 TIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMS 485
Query: 180 EEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKL 239
E+ EKRF+VTVIKDLL LC +K+GKDNKA++AS+IMYVVGQYPRFL+AHW FL+TV+ KL
Sbjct: 486 EDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKL 545
Query: 240 FEFMH 244
FEFMH
Sbjct: 546 FEFMH 550
>pdb|4HAX|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
Length = 1023
Score = 242 bits (618), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 118/245 (48%), Positives = 161/245 (65%), Gaps = 30/245 (12%)
Query: 4 LESDE----WFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIM 59
LESDE A YL+ +S+++E E+FK L+YW+ L +DL+ E P+
Sbjct: 332 LESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYE----------PL- 380
Query: 60 DLPNNKSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKPXXXXXXXXXXXXXXREFMKDTD 119
++ Y + +++R +++ M +P REF+K++D
Sbjct: 381 ---------------KKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESD 425
Query: 120 SINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMH 179
+I LYK+ RE LVYLTHLN DTE++M KL +Q++G+EWSW N+NTL WAIGSISG M
Sbjct: 426 TIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMS 485
Query: 180 EEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKL 239
E+ EKRF+VTVIKDLL LC +K+GKDNKA++AS+IMYVVGQYPRFL+AHW FL+TV+ L
Sbjct: 486 EDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILAL 545
Query: 240 FEFMH 244
FEFMH
Sbjct: 546 FEFMH 550
>pdb|4HAW|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
Length = 1023
Score = 242 bits (618), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 118/245 (48%), Positives = 161/245 (65%), Gaps = 30/245 (12%)
Query: 4 LESDE----WFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIM 59
LESDE A YL+ +S+++E E+FK L+YW+ L +DL+ E P+
Sbjct: 332 LESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYE----------PL- 380
Query: 60 DLPNNKSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKPXXXXXXXXXXXXXXREFMKDTD 119
++ Y + +++R +++ M +P REF+K++D
Sbjct: 381 ---------------KKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESD 425
Query: 120 SINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMH 179
+I LYK+ RE LVYLTHLN DTE++M KL +Q++G+EWSW N+NTL WAIGSISG M
Sbjct: 426 TIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMS 485
Query: 180 EEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKL 239
E+ EKRF+VTVIKDLL LC +K+GKDN A++AS+IMYVVGQYPRFL+AHW FL+TV+ KL
Sbjct: 486 EDTEKRFVVTVIKDLLDLCVKKRGKDNAAVVASDIMYVVGQYPRFLKAHWNFLRTVILKL 545
Query: 240 FEFMH 244
FEFMH
Sbjct: 546 FEFMH 550
>pdb|4HAY|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
Length = 1023
Score = 241 bits (616), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 117/245 (47%), Positives = 162/245 (66%), Gaps = 30/245 (12%)
Query: 4 LESDE----WFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIM 59
LESDE A YL+ +S+++E E+FK L+YW+ L +DL+ E P+
Sbjct: 332 LESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYE----------PL- 380
Query: 60 DLPNNKSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKPXXXXXXXXXXXXXXREFMKDTD 119
++ Y + +++R +++ M +P REF+K++D
Sbjct: 381 ---------------KKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESD 425
Query: 120 SINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMH 179
+I LYK+ RE LVYLTHLN DTE++M KL +Q++G+EWSW N+NTL WAIGSISG M
Sbjct: 426 TIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMS 485
Query: 180 EEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKL 239
E+ EKRF+VTVIKDLL LC +K+GKDN+A++AS+IMYVVGQYPRFL+AHW FL+TV+ +L
Sbjct: 486 EDTEKRFVVTVIKDLLDLCVKKRGKDNEAVVASDIMYVVGQYPRFLKAHWNFLRTVILQL 545
Query: 240 FEFMH 244
FEFMH
Sbjct: 546 FEFMH 550
>pdb|4HAZ|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
Length = 1023
Score = 240 bits (613), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 117/245 (47%), Positives = 161/245 (65%), Gaps = 30/245 (12%)
Query: 4 LESDE----WFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIM 59
LESDE A YL+ +S+++E E+FK L+YW+ L +DL+ E P+
Sbjct: 332 LESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYE----------PL- 380
Query: 60 DLPNNKSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKPXXXXXXXXXXXXXXREFMKDTD 119
++ Y + +++R +++ M +P REF+K++D
Sbjct: 381 ---------------KKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESD 425
Query: 120 SINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMH 179
+I LYK+ RE LVYLTHLN DTE++M KL +Q++G+EWSW N+NTL WAIGSISG M
Sbjct: 426 TIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMS 485
Query: 180 EEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKL 239
E+ EKRF+VTVIKDLL LC +K GKDN+A++AS+IMYVVGQYPRFL+AHW FL+TV+ +L
Sbjct: 486 EDTEKRFVVTVIKDLLDLCVKKSGKDNEAVVASDIMYVVGQYPRFLKAHWNFLRTVILQL 545
Query: 240 FEFMH 244
FEFMH
Sbjct: 546 FEFMH 550
>pdb|3M1I|C Chain C, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 1049
Score = 240 bits (613), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 118/245 (48%), Positives = 161/245 (65%), Gaps = 30/245 (12%)
Query: 4 LESDE----WFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIM 59
LESDE A YL+ +S+++E E+FK L+YW+ L +DL+ E P+
Sbjct: 332 LESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYE----------PL- 380
Query: 60 DLPNNKSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKPXXXXXXXXXXXXXXREFMKDTD 119
++ Y + +++R +++ M +P REF+K++D
Sbjct: 381 ---------------KKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESD 425
Query: 120 SINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMH 179
+I LYK+ RE LVYLTHLN DTE++M KL +Q++G+EWSW N+NTL WAIGSISG M
Sbjct: 426 TIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMS 485
Query: 180 EEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKL 239
E+ EKRF+VTVIKDLL L +K+GKDNKA++AS+IMYVVGQYPRFL+AHW FL+TV+ KL
Sbjct: 486 EDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKL 545
Query: 240 FEFMH 244
FEFMH
Sbjct: 546 FEFMH 550
>pdb|3VYC|A Chain A, Crystal Structure Of Unliganded Saccharomyces Cerevisiae
Crm1 (Xpo1p)
Length = 1033
Score = 240 bits (613), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 118/245 (48%), Positives = 161/245 (65%), Gaps = 30/245 (12%)
Query: 4 LESDE----WFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIM 59
LESDE A YL+ +S+++E E+FK L+YW+ L +DL+ E P+
Sbjct: 330 LESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYE----------PL- 378
Query: 60 DLPNNKSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKPXXXXXXXXXXXXXXREFMKDTD 119
++ Y + +++R +++ M +P REF+K++D
Sbjct: 379 ---------------KKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESD 423
Query: 120 SINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMH 179
+I LYK+ RE LVYLTHLN DTE++M KL +Q++G+EWSW N+NTL WAIGSISG M
Sbjct: 424 TIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMS 483
Query: 180 EEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKL 239
E+ EKRF+VTVIKDLL L +K+GKDNKA++AS+IMYVVGQYPRFL+AHW FL+TV+ KL
Sbjct: 484 EDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKL 543
Query: 240 FEFMH 244
FEFMH
Sbjct: 544 FEFMH 548
>pdb|4HB3|C Chain C, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
Length = 1023
Score = 240 bits (613), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 118/245 (48%), Positives = 161/245 (65%), Gaps = 30/245 (12%)
Query: 4 LESDE----WFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIM 59
LESDE A YL+ +S+++E E+FK L+YW+ L +DL+ E P+
Sbjct: 332 LESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYE----------PL- 380
Query: 60 DLPNNKSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKPXXXXXXXXXXXXXXREFMKDTD 119
++ Y + +++R +++ M +P REF+K++D
Sbjct: 381 ---------------KKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESD 425
Query: 120 SINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMH 179
+I LYK+ RE LVYLTHLN DTE++M KL +Q++G+EWSW N+NTL WAIGSISG M
Sbjct: 426 TIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMS 485
Query: 180 EEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKL 239
E+ EKRF+VTVIKDLL L +K+GKDNKA++AS+IMYVVGQYPRFL+AHW FL+TV+ KL
Sbjct: 486 EDTEKRFVVTVIKDLLDLSVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKL 545
Query: 240 FEFMH 244
FEFMH
Sbjct: 546 FEFMH 550
>pdb|4HB0|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
Length = 1023
Score = 240 bits (612), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 116/245 (47%), Positives = 161/245 (65%), Gaps = 30/245 (12%)
Query: 4 LESDE----WFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIM 59
LESDE A YL+ +S+++E E+FK L+YW+ L +DL+ E P+
Sbjct: 332 LESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYE----------PL- 380
Query: 60 DLPNNKSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKPXXXXXXXXXXXXXXREFMKDTD 119
++ Y + +++R +++ M +P REF+K++D
Sbjct: 381 ---------------KKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESD 425
Query: 120 SINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMH 179
+I LYK+ RE LVYLTHLN DTE++M KL +Q++G+EWSW N+NTL WAIGSISG M
Sbjct: 426 TIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMS 485
Query: 180 EEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKL 239
E+ EKRF+VTVIKDLL LC Q+ G+DN+A++AS+IMYVVGQYPRFL+AHW FL+TV+ +L
Sbjct: 486 EDTEKRFVVTVIKDLLDLCVQQSGQDNQAVVASDIMYVVGQYPRFLKAHWNFLRTVILQL 545
Query: 240 FEFMH 244
FEFMH
Sbjct: 546 FEFMH 550
>pdb|2L1L|B Chain B, Nmr Solution Structure Of The Phi0 Pki Nes Peptide In
Complex With Crm1-Rangtp
Length = 127
Score = 150 bits (380), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 69/71 (97%), Positives = 71/71 (100%)
Query: 174 ISGAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLK 233
ISGAMHEEDEKRFLVTVIKDLLGLCEQK+GKDNKAIIASNIMY+VGQYPRFLRAHWKFLK
Sbjct: 1 ISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLK 60
Query: 234 TVVNKLFEFMH 244
TVVNKLFEFMH
Sbjct: 61 TVVNKLFEFMH 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,674,560
Number of Sequences: 62578
Number of extensions: 245274
Number of successful extensions: 806
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 775
Number of HSP's gapped (non-prelim): 27
length of query: 249
length of database: 14,973,337
effective HSP length: 96
effective length of query: 153
effective length of database: 8,965,849
effective search space: 1371774897
effective search space used: 1371774897
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)