BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4087
(249 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q80U96|XPO1_RAT Exportin-1 OS=Rattus norvegicus GN=Xpo1 PE=2 SV=1
Length = 1071
Score = 389 bits (999), Expect = e-108, Method: Compositional matrix adjust.
Identities = 187/241 (77%), Positives = 206/241 (85%), Gaps = 15/241 (6%)
Query: 8 EWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSAS----GLPIMDLPN 63
E ALHY++L+SEV+E EIFKICLEYWN L+++LYRESP+ +SAS G D+P
Sbjct: 345 EALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIP- 403
Query: 64 NKSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINL 123
RRQ Y VL+K+R +MVSRMAKPEEVLVVEN+ GEVVREFMKDTDSINL
Sbjct: 404 ----------PRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINL 453
Query: 124 YKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDE 183
YKNMRETLVYLTHL+Y DTE +MT+KLQ QVNGTEWSWKNLNTLCWAIGSISGAMHEEDE
Sbjct: 454 YKNMRETLVYLTHLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDE 513
Query: 184 KRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFM 243
KRFLVTVIKDLLGLCEQK+GKDNKAIIASNIMY+VGQYPRFLRAHWKFLKTVVNKLFEFM
Sbjct: 514 KRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFM 573
Query: 244 H 244
H
Sbjct: 574 H 574
>sp|Q6P5F9|XPO1_MOUSE Exportin-1 OS=Mus musculus GN=Xpo1 PE=1 SV=1
Length = 1071
Score = 389 bits (999), Expect = e-107, Method: Compositional matrix adjust.
Identities = 187/241 (77%), Positives = 206/241 (85%), Gaps = 15/241 (6%)
Query: 8 EWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSAS----GLPIMDLPN 63
E ALHY++L+SEV+E EIFKICLEYWN L+++LYRESP+ +SAS G D+P
Sbjct: 345 EALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIP- 403
Query: 64 NKSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINL 123
RRQ Y VL+K+R +MVSRMAKPEEVLVVEN+ GEVVREFMKDTDSINL
Sbjct: 404 ----------PRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINL 453
Query: 124 YKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDE 183
YKNMRETLVYLTHL+Y DTE +MT+KLQ QVNGTEWSWKNLNTLCWAIGSISGAMHEEDE
Sbjct: 454 YKNMRETLVYLTHLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDE 513
Query: 184 KRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFM 243
KRFLVTVIKDLLGLCEQK+GKDNKAIIASNIMY+VGQYPRFLRAHWKFLKTVVNKLFEFM
Sbjct: 514 KRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFM 573
Query: 244 H 244
H
Sbjct: 574 H 574
>sp|O14980|XPO1_HUMAN Exportin-1 OS=Homo sapiens GN=XPO1 PE=1 SV=1
Length = 1071
Score = 389 bits (999), Expect = e-107, Method: Compositional matrix adjust.
Identities = 186/237 (78%), Positives = 208/237 (87%), Gaps = 7/237 (2%)
Query: 8 EWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSH 67
E ALHY++L+SEV+E EIFKICLEYWN L+++LYRESP+ +SAS P++ + S
Sbjct: 345 ETLMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSAS--PLL----SGSQ 398
Query: 68 TMDEAVARRQFYAPVLTKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNM 127
D RRQ Y P+L K+R +MVSRMAKPEEVLVVEN+ GEVVREFMKDTDSINLYKNM
Sbjct: 399 HFD-VPPRRQLYLPMLFKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNM 457
Query: 128 RETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL 187
RETLVYLTHL+Y DTE++MT+KL QVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL
Sbjct: 458 RETLVYLTHLDYVDTERIMTEKLHNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL 517
Query: 188 VTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH 244
VTVIKDLLGLCEQK+GKDNKAIIASNIMY+VGQYPRFLRAHWKFLKTVVNKLFEFMH
Sbjct: 518 VTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMH 574
>sp|Q9TVM2|XPO1_DROME Exportin-1 OS=Drosophila melanogaster GN=emb PE=1 SV=1
Length = 1063
Score = 366 bits (940), Expect = e-101, Method: Compositional matrix adjust.
Identities = 175/237 (73%), Positives = 199/237 (83%), Gaps = 11/237 (4%)
Query: 8 EWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSH 67
++ AL YLV+ISEV++VE+FKICLEYWN+L DLY + P +S
Sbjct: 341 DYLNQALMYLVMISEVEDVEVFKICLEYWNSLVEDLYNSEFFH-----------PTLEST 389
Query: 68 TMDEAVARRQFYAPVLTKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNM 127
+ RR+FYAP+L+K+R+IM+SRMAKPEEVLVVENENGEVVREFMKDT+SINLYKNM
Sbjct: 390 KRQQVYPRRRFYAPILSKVRFIMISRMAKPEEVLVVENENGEVVREFMKDTNSINLYKNM 449
Query: 128 RETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL 187
RETLV+LTHL+ DT+++MT KL QVNG+E+SWKNLNTLCWAIGSISGA EEDEKRFL
Sbjct: 450 RETLVFLTHLDSVDTDRIMTLKLLNQVNGSEFSWKNLNTLCWAIGSISGAFCEEDEKRFL 509
Query: 188 VTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH 244
VTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH
Sbjct: 510 VTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH 566
>sp|P14068|XPO1_SCHPO Exportin-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=xpo1 PE=1 SV=3
Length = 1078
Score = 316 bits (809), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 152/246 (61%), Positives = 188/246 (76%), Gaps = 6/246 (2%)
Query: 5 ESDEWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNN 64
E+ E A YL+ IS ++E EIFKICLEYW+ L + LY E + + P+++L +
Sbjct: 330 ENQEVLLNAHSYLLNISRINEREIFKICLEYWSKLVAQLYEEMQQIPMSEMNPLLNLSSP 389
Query: 65 KS------HTMDEAVARRQFYAPVLTKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDT 118
S + + R+ Y +L+ +R +M+ M KPEEVL+VEN+ GE+VREF+K+T
Sbjct: 390 TSLISSNPNMLANLPLRKHIYKDILSTLRLVMIENMVKPEEVLIVENDEGEIVREFVKET 449
Query: 119 DSINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAM 178
D+I LYK+MRE LVYLTHL+ DTE VMT+KL + V GTEWSW+NLNTLCWAIGSISGAM
Sbjct: 450 DTITLYKSMREVLVYLTHLDVVDTEIVMTEKLARIVVGTEWSWQNLNTLCWAIGSISGAM 509
Query: 179 HEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNK 238
+EE EKRFLV VIKDLLGLCE K+GKDNKA++ASNIMYVVGQYPRFL+AHWKFLKTVVNK
Sbjct: 510 NEEMEKRFLVNVIKDLLGLCEMKRGKDNKAVVASNIMYVVGQYPRFLKAHWKFLKTVVNK 569
Query: 239 LFEFMH 244
LFEFMH
Sbjct: 570 LFEFMH 575
>sp|Q54EV7|XPO1_DICDI Exportin-1 OS=Dictyostelium discoideum GN=xpo1 PE=3 SV=2
Length = 1057
Score = 293 bits (749), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 139/236 (58%), Positives = 179/236 (75%), Gaps = 15/236 (6%)
Query: 9 WFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSHT 68
+ T A LV IS +DE+E+FKICLEYWN LSS+LY + ++ T
Sbjct: 345 YLTLAHEILVNISNIDELELFKICLEYWNFLSSNLYSDIATFTT---------------T 389
Query: 69 MDEAVARRQFYAPVLTKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNMR 128
+ R Q Y VL+K+R +++ MAKPEEV+VVE+ENG +VRE KDTDS+ LY++MR
Sbjct: 390 LLSTPPRLQLYKSVLSKVRVVLIDHMAKPEEVIVVEDENGNIVRETTKDTDSLTLYESMR 449
Query: 129 ETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLV 188
ETL++LTHL+ +T+ +M +KLQ ++G E++++ LNTLCWAIGSISGA ++E EKRFLV
Sbjct: 450 ETLIFLTHLDSENTQHIMLEKLQTLISGREFTFQRLNTLCWAIGSISGAQNKEQEKRFLV 509
Query: 189 TVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH 244
TVIKDLL LC+ KKGKDNKA+IAS+IMY+VGQYPRFL+ HWKFLKTVVNKLFEFMH
Sbjct: 510 TVIKDLLELCQNKKGKDNKAVIASDIMYIVGQYPRFLKDHWKFLKTVVNKLFEFMH 565
>sp|P30822|XPO1_YEAST Exportin-1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=CRM1 PE=1 SV=1
Length = 1084
Score = 273 bits (699), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 132/256 (51%), Positives = 182/256 (71%), Gaps = 15/256 (5%)
Query: 4 LESDE----WFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIM 59
LESDE A YL+ +S+++E E+FK L+YW+ L +DL+ E + + P++
Sbjct: 330 LESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEVQRLPATEMSPLI 389
Query: 60 DLP------NNKSHTMDEAVARR-----QFYAPVLTKIRYIMVSRMAKPEEVLVVENENG 108
L + S ++ +R Y + +++R +++ M +PEEVLVVEN+ G
Sbjct: 390 QLSVGSQAISTGSGALNPEYMKRFPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEG 449
Query: 109 EVVREFMKDTDSINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLC 168
E+VREF+K++D+I LYK+ RE LVYLTHLN DTE++M KL +Q++G+EWSW N+NTL
Sbjct: 450 EIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLS 509
Query: 169 WAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAH 228
WAIGSISG M E+ EKRF+VTVIKDLL L +K+GKDNKA++AS+IMYVVGQYPRFL+AH
Sbjct: 510 WAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH 569
Query: 229 WKFLKTVVNKLFEFMH 244
W FL+TV+ KLFEFMH
Sbjct: 570 WNFLRTVILKLFEFMH 585
>sp|Q7Z2Z2|ETUD1_HUMAN Elongation factor Tu GTP-binding domain-containing protein 1
OS=Homo sapiens GN=EFTUD1 PE=1 SV=2
Length = 1120
Score = 35.4 bits (80), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 85 KIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNMRETLVYLTHLNYTDTEQ 144
K+ + V M PEEV + EN +++R + T S+N +N TH+ + T++
Sbjct: 747 KLATLSVRAMPLPEEVTQILEENSDLIRSMEQLTSSLNEGEN--------THMIHQKTQE 798
Query: 145 VM---TQKLQQQVNGTEWSWKNLNTLCWAIG 172
+ KL+Q + G W+N+ W+ G
Sbjct: 799 KIWEFKGKLEQHLTGRR--WRNIVDQIWSFG 827
>sp|Q25BW4|BGL1B_PHACH Beta-glucosidase 1B OS=Phanerochaete chrysosporium GN=BGL1B PE=1
SV=1
Length = 540
Score = 35.0 bits (79), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 26/119 (21%)
Query: 77 QFYAPVLTKIRYIMVSRMAKP----EEVLVVENENGEVVREFMKDTDSINLYKNMRETLV 132
Q YAP + + R KP E V++EN + + E +KD D ++ Y+ + ++L+
Sbjct: 355 QDYAPGFRDLLNYLYKRYRKPIYVTENGFAVKDENSKPLEEALKDDDRVHYYQGVTDSLL 414
Query: 133 YLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVI 191
+ D W L+ WA G I+ RF VT +
Sbjct: 415 AAVKEDGVDVRGYF-------------GWSLLDNFEWADGYIT---------RFGVTYV 451
>sp|O18388|IMB_DROME Importin subunit beta OS=Drosophila melanogaster GN=Fs(2)Ket PE=2
SV=2
Length = 884
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 12/112 (10%)
Query: 128 RETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTL-CWAIGSISGAMHEEDEKRF 186
R TLV L LN QVM + Q + + +L +L C + S+ +HE+D +
Sbjct: 554 RTTLVILERLN-----QVMQMETQINNHSDRHQFNDLQSLLCATLQSVLRKVHEQDAPQI 608
Query: 187 LVTVIKDLLGLCEQKKGKDN----KAIIA-SNIMYVVG-QYPRFLRAHWKFL 232
++ LL + GK +A +A S ++ ++G Q+ +++ A FL
Sbjct: 609 SDAIMTALLTMFNSSAGKSGVVQEEAFLAVSTLVELLGAQFAKYMPAFKDFL 660
>sp|Q4JQH8|NU4M_TETNG NADH-ubiquinone oxidoreductase chain 4 OS=Tetraodon nigroviridis
GN=MT-ND4 PE=3 SV=1
Length = 460
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 19/104 (18%)
Query: 9 WFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMS-----------SASGLP 57
W TT LH L++ + + K NA + +PYM+ S LP
Sbjct: 24 WPTTLLHSLLI--ALASLSWLK------NASETGWSSLNPYMATDPLSTPLLILSCWLLP 75
Query: 58 IMDLPNNKSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKPEEVL 101
+M L + +HT E + R++ Y +LT +++ ++ + E ++
Sbjct: 76 LMILASQPNHTAHEPINRQRMYISLLTSLQFFLILAFSATEMIM 119
>sp|Q6NZG4|NOXIN_MOUSE Nitric oxide-inducible gene protein OS=Mus musculus GN=Noxin PE=2
SV=1
Length = 898
Score = 30.8 bits (68), Expect = 9.9, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 8/126 (6%)
Query: 96 KPEEVLVVENENGEVVREFMKDTDSINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQ-QV 154
KPEE + ++ + + ++S+N + + E+ V +T ++ + +Q M + + +
Sbjct: 388 KPEETANPSQNSDSLIWDDLPLSESLNKFLAVVESEVAVTEIDAKNRKQGMDKSIDKCHK 447
Query: 155 NGTEWS---WKN---LNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKA 208
N + S W+N LNT C+++ S S AM ++ K L + K QK+ K +K
Sbjct: 448 NYSRLSLTPWRNTRALNTSCFSLRS-SQAMMKDSGKEALFSNCKSNSSPHIQKESKADKT 506
Query: 209 IIASNI 214
A +I
Sbjct: 507 EAAVSI 512
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,688,209
Number of Sequences: 539616
Number of extensions: 3546321
Number of successful extensions: 8655
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 8631
Number of HSP's gapped (non-prelim): 36
length of query: 249
length of database: 191,569,459
effective HSP length: 115
effective length of query: 134
effective length of database: 129,513,619
effective search space: 17354824946
effective search space used: 17354824946
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)