Query psy4087
Match_columns 249
No_of_seqs 112 out of 161
Neff 5.2
Searched_HMMs 46136
Date Fri Aug 16 16:32:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4087.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4087hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5101 CRM1 Importin beta-rel 100.0 2.1E-94 4.5E-99 704.8 21.4 245 3-248 333-584 (1053)
2 KOG2020|consensus 100.0 2.3E-60 5E-65 490.3 16.3 237 5-248 327-564 (1041)
3 KOG2023|consensus 96.1 0.061 1.3E-06 55.5 11.3 193 9-240 253-482 (885)
4 KOG2081|consensus 94.4 1 2.2E-05 45.6 13.6 189 12-246 291-480 (559)
5 KOG2022|consensus 89.6 2 4.4E-05 45.8 9.3 201 9-244 348-559 (982)
6 COG1334 FlaG Uncharacterized f 70.8 5.2 0.00011 33.1 3.4 32 102-134 84-115 (120)
7 PF08619 Nha1_C: Alkali metal 62.6 3.1 6.8E-05 40.9 0.7 21 99-119 254-274 (434)
8 PF13513 HEAT_EZ: HEAT-like re 62.2 8.2 0.00018 26.0 2.6 32 167-199 7-38 (55)
9 KOG1241|consensus 57.4 1.9E+02 0.0041 31.1 12.4 186 24-244 271-459 (859)
10 KOG3489|consensus 50.1 18 0.00038 28.3 2.8 43 161-203 31-82 (86)
11 PF03646 FlaG: FlaG protein; 49.4 18 0.0004 28.2 3.0 32 102-134 72-103 (107)
12 PRK08452 flagellar protein Fla 44.7 23 0.00051 29.3 3.0 31 102-133 88-118 (124)
13 PF11058 Ral: Antirestriction 38.4 10 0.00022 27.4 -0.0 21 92-113 25-45 (66)
14 PF14764 SPG48: AP-5 complex s 36.1 55 0.0012 32.8 4.6 95 80-194 257-354 (459)
15 PF14426 Imm2: Immunity protei 33.6 38 0.00083 24.8 2.3 24 173-196 8-31 (60)
16 COG5064 SRP1 Karyopherin (impo 32.4 38 0.00083 33.3 2.8 40 167-209 389-431 (526)
17 PHA00022 VII minor coat protei 29.1 19 0.00041 22.5 0.0 13 166-178 15-27 (28)
18 PF05421 DUF751: Protein of un 28.4 19 0.00041 26.3 -0.0 10 218-227 5-14 (61)
19 PF08349 DUF1722: Protein of u 27.4 2.8E+02 0.0062 22.0 6.6 70 122-192 10-79 (117)
20 PRK08868 flagellar protein Fla 25.3 69 0.0015 27.3 2.8 27 102-129 106-132 (144)
21 PF06404 PSK: Phytosulfokine p 25.0 31 0.00068 26.4 0.6 16 126-143 62-77 (81)
22 PRK07738 flagellar protein Fla 24.6 68 0.0015 26.3 2.6 29 102-131 81-109 (117)
23 PF12194 Ste5_C: Protein kinas 21.4 1.7E+02 0.0038 26.0 4.6 45 87-135 5-49 (191)
24 PF11704 Folliculin: Vesicle c 20.9 1.1E+02 0.0024 26.2 3.3 34 212-245 68-101 (167)
25 PF02526 GBP_repeat: Glycophor 20.9 1.1E+02 0.0024 20.1 2.5 33 105-141 4-37 (38)
No 1
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=100.00 E-value=2.1e-94 Score=704.77 Aligned_cols=245 Identities=58% Similarity=0.975 Sum_probs=223.9
Q ss_pred chhhHHHHHHHHHHHHhhcCcCchhHHHHHHHHHHHHHHHHHhhCCCCCCCCCC-CccC---C---CCCCCccchhHHHH
Q psy4087 3 ALESDEWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGL-PIMD---L---PNNKSHTMDEAVAR 75 (249)
Q Consensus 3 ~~~~~~~l~~~l~~lv~iS~i~d~EiFkicleyW~~~~~~ly~e~~~~~~~~~~-~~~~---~---~~~~~~~~~~~~~r 75 (249)
.+++++.++.||.||++||+|+++|+||+|+|||+.++.+||.|.+.-.. +.+ |++. | .+..+..++..|.|
T Consensus 333 ~~e~~e~llnah~YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~-tem~Pli~ls~~s~~istnpn~~~~~pLr 411 (1053)
T COG5101 333 AREMAENLLNAHGYLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPA-TEMSPLIQLSVGSQAISTNPNQDSTKPLR 411 (1053)
T ss_pred ChhHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCcc-cccCcchhccccchhccCCcchhcccchH
Confidence 47788899999999999999999999999999999999999988752111 111 2221 1 00112333447899
Q ss_pred HHhhHHHHHHHHHHHHhhcCCCceEEEeecCCCchhhhhhcchhhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHhhc
Q psy4087 76 RQFYAPVLTKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVN 155 (249)
Q Consensus 76 ~~~Y~~il~~lr~v~I~~M~kPeEVlIve~e~Geivre~~~dtd~i~lYk~mretLvyLt~Ld~~dt~~im~ekL~~q~~ 155 (249)
++.|.+|||+||.+||++|+|||||+||+||+||||||+++|||+|++||+|||+|+|||||+..||+.+|.+|+.+|++
T Consensus 412 khiY~~ilsqLrlvlienMvrPEEVliVendegEivRefvketDtI~lYksmRevLvyLthL~v~Dte~~mi~Klarq~d 491 (1053)
T COG5101 412 KHIYIGILSQLRLVLIENMVRPEEVLIVENDEGEIVREFVKETDTIELYKSMREVLVYLTHLIVDDTEKYMIGKLARQLD 491 (1053)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcceEEEEECCCcHHHHHHhccccHhHHHHHHhhHHHHHhhhhhhhHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccchhHHHhhhhhccCCChhhhhHhHHHHHHHHHhhhhhccCCcchHHhhhcceeeeccchHhHHhhHHHHHHH
Q psy4087 156 GTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTV 235 (249)
Q Consensus 156 ~~~ws~~~lN~LCWAIGSISGam~ee~Ek~Flv~vIk~LL~LcE~k~gk~nKAvIASnIMYvvgQYpRFLk~~w~fLktV 235 (249)
|++|||++||+||||||||||||+|+.||||+|+|||+||+|||+|+|||||||||||||||||||||||++||+|||||
T Consensus 492 g~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvGQYpRFLkahw~FLkTV 571 (1053)
T COG5101 492 GKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQYPRFLKAHWSFLKTV 571 (1053)
T ss_pred CCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeeccchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCC
Q psy4087 236 VNKLFEFMHGPSY 248 (249)
Q Consensus 236 v~KLfEFM~e~~~ 248 (249)
|+||||||||.|.
T Consensus 572 v~KLFEFMhE~HE 584 (1053)
T COG5101 572 VKKLFEFMHEDHE 584 (1053)
T ss_pred HHHHHHHHhhhhh
Confidence 9999999999994
No 2
>KOG2020|consensus
Probab=100.00 E-value=2.3e-60 Score=490.35 Aligned_cols=237 Identities=60% Similarity=0.999 Sum_probs=218.3
Q ss_pred hhHHHHHHHHHHHHhhcCcCchhHHHHHHHHHHHHHHHHHhh-CCCCCCCCCCCccCCCCCCCccchhHHHHHHhhHHHH
Q psy4087 5 ESDEWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRE-SPYMSSASGLPIMDLPNNKSHTMDEAVARRQFYAPVL 83 (249)
Q Consensus 5 ~~~~~l~~~l~~lv~iS~i~d~EiFkicleyW~~~~~~ly~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~Y~~il 83 (249)
..++.+..|+.|++.+|.+++.|+||+|+|||+.+++++|.+ .|+-+.+..+|.. .++.+.+.|+..|..++
T Consensus 327 ~~~~~~~~~~~~li~i~~~~~se~~~~~ld~W~~lv~~l~~~~~~ll~~s~~~~~~-------~~~~ri~~rk~~y~~~~ 399 (1041)
T KOG2020|consen 327 SQRPVLLEALLELILISTIEPSEIFKICLDYWNKLVADLYYNKPPLLQLSTTLPSI-------SDYSRIDFRKSIYQEFL 399 (1041)
T ss_pred hhhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhhhcccccccccccccccc-------cchhccchHHHHHHHHH
Confidence 346788899999999999999999999999999999999986 2221111111111 11344678999999999
Q ss_pred HHHHHHHHhhcCCCceEEEeecCCCchhhhhhcchhhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHhhcCCCCCccc
Q psy4087 84 TKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKN 163 (249)
Q Consensus 84 ~~lr~v~I~~M~kPeEVlIve~e~Geivre~~~dtd~i~lYk~mretLvyLt~Ld~~dt~~im~ekL~~q~~~~~ws~~~ 163 (249)
+++|.+++.+|+||+||+|++|+.|++|||.++|++.+.+|+.||++++|++|||..||+.+|.++++.+++|.+|+|++
T Consensus 400 ~~~r~l~l~~m~~Pe~vlive~~~~~~vre~~~~~~~~~ly~~~~e~l~~~~~L~~~~t~~~~~~kl~~~l~~~~~~~~~ 479 (1041)
T KOG2020|consen 400 SKLRLLRLERMAKPEEVLIVENEQGEIVREFMKDHDFITLYPVLRETLVYLLHLDVVDTEKIMTEKLAIQLDGDEWSLHN 479 (1041)
T ss_pred HHHHHHHHHHhcCchheeEEechHHHHHHHhccCcchhhhhHHHHHHHHHHHHhhhhhhhhhhhHhHHHHhhHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHhhhhhccCCChhhhhHhHHHHHHHHHhhhhhccCCcchHHhhhcceeeeccchHhHHhhHHHHHHHHHHHHhhh
Q psy4087 164 LNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFM 243 (249)
Q Consensus 164 lN~LCWAIGSISGam~ee~Ek~Flv~vIk~LL~LcE~k~gk~nKAvIASnIMYvvgQYpRFLk~~w~fLktVv~KLfEFM 243 (249)
+|++|||||||||+|.|+.|++|++.+++|+|++||.++||+|||+|||||||+|||||||+++||+|||||++||||||
T Consensus 480 ln~l~~ai~sisg~~~e~~e~k~~~~v~~d~l~l~E~~~~kdn~avi~~Ni~~vv~q~p~Fl~~h~~~Lkt~~~~L~efm 559 (1041)
T KOG2020|consen 480 LNRLCWAIGSISGRMLEDMEKKFFVAVIRDLLNLCERKRGKDNKAVIASNIMYVVGQYPRFLKAHWKFLKTVVHKLFEFM 559 (1041)
T ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy4087 244 HGPSY 248 (249)
Q Consensus 244 ~e~~~ 248 (249)
||+|.
T Consensus 560 he~h~ 564 (1041)
T KOG2020|consen 560 HETHE 564 (1041)
T ss_pred hhhhH
Confidence 99996
No 3
>KOG2023|consensus
Probab=96.09 E-value=0.061 Score=55.50 Aligned_cols=193 Identities=23% Similarity=0.398 Sum_probs=137.7
Q ss_pred HHHHHHHHHHhhcCcCchhHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCccCCCCCCCccchhHHHHHHhhHHHHHHHHH
Q psy4087 9 WFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSHTMDEAVARRQFYAPVLTKIRY 88 (249)
Q Consensus 9 ~l~~~l~~lv~iS~i~d~EiFkicleyW~~~~~~ly~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~Y~~il~~lr~ 88 (249)
-|-...+||++..+=.|++|=--+.|||..++.+ |. -+..-.|.|.+|..
T Consensus 253 hl~~IveyML~~tqd~dE~VALEACEFwla~aeq-----pi-------------------------~~~~L~p~l~kliP 302 (885)
T KOG2023|consen 253 HLDNIVEYMLQRTQDVDENVALEACEFWLALAEQ-----PI-------------------------CKEVLQPYLDKLIP 302 (885)
T ss_pred chHHHHHHHHHHccCcchhHHHHHHHHHHHHhcC-----cC-------------------------cHHHHHHHHHHHHH
Confidence 3456789999999889999999999999987742 21 12344788999999
Q ss_pred HHHhhcCCCceEEEe-e-cCCCchh--hhh---------------------------hcchhhH---HHHHHHHHHHHHH
Q psy4087 89 IMVSRMAKPEEVLVV-E-NENGEVV--REF---------------------------MKDTDSI---NLYKNMRETLVYL 134 (249)
Q Consensus 89 v~I~~M~kPeEVlIv-e-~e~Geiv--re~---------------------------~~dtd~i---~lYk~mretLvyL 134 (249)
++++.|+=-++=++. + +|+.+-| ||. ..|.|.. +|=|.--.+|--|
T Consensus 303 vLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVL 382 (885)
T KOG2023|consen 303 VLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVL 382 (885)
T ss_pred HHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHH
Confidence 999999987765442 2 3443222 110 1122222 3445556789999
Q ss_pred hcCChhhHHHHHHHHHHHhhcCCCCCcccchhHHHhhhhhc-cCCChhhhhHhHHHHHHHHHhhhhhccCCcchHHhhhc
Q psy4087 135 THLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSIS-GAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASN 213 (249)
Q Consensus 135 t~Ld~~dt~~im~ekL~~q~~~~~ws~~~lN~LCWAIGSIS-Gam~ee~Ek~Flv~vIk~LL~LcE~k~gk~nKAvIASn 213 (249)
++.-.++...++...|...+...+|-... +=.-|.|||+ |+|.- =-..|...|-.|+.+-..| ||.|-|=
T Consensus 383 anvf~~elL~~l~PlLk~~L~~~~W~vrE--agvLAlGAIAEGcM~g--~~p~LpeLip~l~~~L~DK-----kplVRsI 453 (885)
T KOG2023|consen 383 ANVFGDELLPILLPLLKEHLSSEEWKVRE--AGVLALGAIAEGCMQG--FVPHLPELIPFLLSLLDDK-----KPLVRSI 453 (885)
T ss_pred HHhhHHHHHHHHHHHHHHHcCcchhhhhh--hhHHHHHHHHHHHhhh--cccchHHHHHHHHHHhccC-----ccceeee
Confidence 99999999999999999988777776654 3456899998 77742 2233455677777777644 8999999
Q ss_pred ceeeeccchHhHH--hhHHHHHHHHHHHH
Q psy4087 214 IMYVVGQYPRFLR--AHWKFLKTVVNKLF 240 (249)
Q Consensus 214 IMYvvgQYpRFLk--~~w~fLktVv~KLf 240 (249)
-..-.|+|..+.- .+.+||+-|+.-|.
T Consensus 454 TCWTLsRys~wv~~~~~~~~f~pvL~~ll 482 (885)
T KOG2023|consen 454 TCWTLSRYSKWVVQDSRDEYFKPVLEGLL 482 (885)
T ss_pred eeeeHhhhhhhHhcCChHhhhHHHHHHHH
Confidence 9999999988776 35578888876654
No 4
>KOG2081|consensus
Probab=94.37 E-value=1 Score=45.60 Aligned_cols=189 Identities=15% Similarity=0.328 Sum_probs=134.7
Q ss_pred HHHHHHHhhcCcCchhHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCccCCCCCCCccchhHHHHHHhhHHHHHHHHHHHH
Q psy4087 12 TALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSHTMDEAVARRQFYAPVLTKIRYIMV 91 (249)
Q Consensus 12 ~~l~~lv~iS~i~d~EiFkicleyW~~~~~~ly~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~Y~~il~~lr~v~I 91 (249)
...+-|+....=+|.|+-+..+-||+.+...+|... ...-+..|+|+..++-..+.
T Consensus 291 ~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~------------------------~~~~~~~frpy~~rLvs~l~ 346 (559)
T KOG2081|consen 291 RIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTD------------------------DDEALGIFRPYFLRLVSLLK 346 (559)
T ss_pred hHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhccc------------------------cHHHHHHhHHHHHHHHHHHH
Confidence 445556677777888999999999999999888431 12346689999999999999
Q ss_pred hhcCCCceEEEeecCCCchhhhhhcchhhHHHHHHHHHHHHHHhcCCh-hhHHHHHHHHHHHhhcCCCCCcccchhHHHh
Q psy4087 92 SRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNMRETLVYLTHLNY-TDTEQVMTQKLQQQVNGTEWSWKNLNTLCWA 170 (249)
Q Consensus 92 ~~M~kPeEVlIve~e~Geivre~~~dtd~i~lYk~mretLvyLt~Ld~-~dt~~im~ekL~~q~~~~~ws~~~lN~LCWA 170 (249)
.+-.=|+...-.-+|+.+ --.+=-.+-+.|.=.+++-- +.+.++|..++.. + .=+|.--..--..
T Consensus 347 ~h~qlp~~~~~l~Ee~~~----------f~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~--~~~We~~EAaLF~ 412 (559)
T KOG2081|consen 347 RHVQLPPDQFDLPEEESE----------FFEFRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--N--NASWEEVEAALFI 412 (559)
T ss_pred HHccCCCccccCccchhH----------HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--C--CCchHHHHHHHHH
Confidence 999988843221111111 11122334455555566544 4667777777765 3 3355555566667
Q ss_pred hhhhccCCChhhhhHhHHHHHHHHHhhhhhccCCcchHHhhhcceeeeccchHhHHhhHHHHHHHHHHHHhhhcCC
Q psy4087 171 IGSISGAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHGP 246 (249)
Q Consensus 171 IGSISGam~ee~Ek~Flv~vIk~LL~LcE~k~gk~nKAvIASnIMYvvgQYpRFLk~~w~fLktVv~KLfEFM~e~ 246 (249)
+-++++..+ ..|+.-+..|++-+.+|-|+.. +++..+ -++|.||..+..|..+|.-|.+=++.+|..+
T Consensus 413 l~~~~~~~~-~~e~~i~pevl~~i~nlp~Q~~------~~~ts~-ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~ 480 (559)
T KOG2081|consen 413 LRAVAKNVS-PEENTIMPEVLKLICNLPEQAP------LRYTSI-LLLGEYSEWVEQHPELLEPVLRYIRQGLQLK 480 (559)
T ss_pred HHHHhccCC-ccccchHHHHHHHHhCCccchh------HHHHHH-HHHHHHHHHHHhCcHHHHHHHHHHHHHhhhc
Confidence 778888887 4688899999999999988764 333332 3789999999999999999999999888654
No 5
>KOG2022|consensus
Probab=89.56 E-value=2 Score=45.76 Aligned_cols=201 Identities=15% Similarity=0.256 Sum_probs=133.5
Q ss_pred HHHHHHHHHHhhcCcCch----hHH-HHHHHHHHHHHHHHHhhCCCCCCCCCCCccCCCCCCCccchhHHHHHHhhH-HH
Q psy4087 9 WFTTALHYLVLISEVDEV----EIF-KICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSHTMDEAVARRQFYA-PV 82 (249)
Q Consensus 9 ~l~~~l~~lv~iS~i~d~----EiF-kicleyW~~~~~~ly~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~Y~-~i 82 (249)
..++-.+.|..+.+++-. |.+ -..++||..+-.+++....-. .+.....|. +|
T Consensus 348 ~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW~tL~dei~~~~~e~---------------------~~~~~~i~~~qI 406 (982)
T KOG2022|consen 348 LVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFWYTLQDEIMQTINET---------------------QQIKKQILSQQI 406 (982)
T ss_pred HHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHHHHHHHHHHHhhhcc---------------------CCcchhHHHHHH
Confidence 344445556666666432 444 357999999998877443211 011344555 77
Q ss_pred HHHHHHHHHhhcCCCceEEEeecCCCchhhhhhcchhhHHHH-HHHHHHHHHHhcCChhhHHHHHHHHHHHhhc---CCC
Q psy4087 83 LTKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLY-KNMRETLVYLTHLNYTDTEQVMTQKLQQQVN---GTE 158 (249)
Q Consensus 83 l~~lr~v~I~~M~kPeEVlIve~e~Geivre~~~dtd~i~lY-k~mretLvyLt~Ld~~dt~~im~ekL~~q~~---~~~ 158 (249)
.-+|-.+.+.||+-|-+=.+.. |. ..+-|+-+-| +..-+++-|.=++--+.+-..+.++|.+.+. ++.
T Consensus 407 y~qlvei~l~K~~~Ps~e~~~~---W~-----S~s~e~F~~YR~diSD~~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p 478 (982)
T KOG2022|consen 407 YAQLVEILLKKLALPSKEIWLS---WS-----SDSREQFESYRKDISDLLMSSYSILGDGLLDFLIDTLEQALAAGDEDP 478 (982)
T ss_pred HHHHHHHHHHHhcCCCHHHhcc---CC-----cchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCc
Confidence 7789999999999997543322 11 1112222333 3344667777777667778888888887653 445
Q ss_pred CCcccchhHHHhhhhhccCCChhhhhHhHHHHHHHHHhhh-hhccCCcchHHhhhcceeeeccchHhHHhhHHHHHHHHH
Q psy4087 159 WSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLC-EQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVN 237 (249)
Q Consensus 159 ws~~~lN~LCWAIGSISGam~ee~Ek~Flv~vIk~LL~Lc-E~k~gk~nKAvIASnIMYvvgQYpRFLk~~w~fLktVv~ 237 (249)
-+|+..-+.|+.+-||+-.+.+ .|++- |..|+..| +.+-++- +.=.++--|..+|-|--||..|.-.|--++.
T Consensus 479 ~s~~~tEaci~~~~sva~~~~~-t~~~~----i~rl~~~~asik~S~~-n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~ 552 (982)
T KOG2022|consen 479 DSLNRTEACIFQFQSVAEYLGE-TESTW----IPRLFETSASIKLSAP-NPQLLSTSSDLIGSLSNWLGEHPMYLNPSLP 552 (982)
T ss_pred hHHHHHHHHHHHHHHHHhhcCc-chhHH----HHHHHHhccccccccC-ChhHHHHHHHHHHHHHHHHhcCCcccCchHH
Confidence 6778888899999999999985 44444 44555444 3334443 5556777889999999999999999999999
Q ss_pred HHHhhhc
Q psy4087 238 KLFEFMH 244 (249)
Q Consensus 238 KLfEFM~ 244 (249)
-||.=.|
T Consensus 553 ~L~~~Lh 559 (982)
T KOG2022|consen 553 LLFQGLH 559 (982)
T ss_pred HHHHHhc
Confidence 8887655
No 6
>COG1334 FlaG Uncharacterized flagellar protein FlaG [Cell motility and secretion]
Probab=70.76 E-value=5.2 Score=33.07 Aligned_cols=32 Identities=25% Similarity=0.634 Sum_probs=26.7
Q ss_pred EeecCCCchhhhhhcchhhHHHHHHHHHHHHHH
Q psy4087 102 VVENENGEVVREFMKDTDSINLYKNMRETLVYL 134 (249)
Q Consensus 102 Ive~e~Geivre~~~dtd~i~lYk~mretLvyL 134 (249)
|++++.|++||+ +.--+-+.+|+.|++++--|
T Consensus 84 I~d~~TgeVIRq-IPpee~L~l~~r~~d~~gil 115 (120)
T COG1334 84 IIDKDTGEVIRQ-IPPEEALELAARMRDVIGIL 115 (120)
T ss_pred EEECCCCcchhh-CChHHHHHHHHHHHHhhhhe
Confidence 579999999997 66677899999999887554
No 7
>PF08619 Nha1_C: Alkali metal cation/H+ antiporter Nha1 C terminus; InterPro: IPR013928 The C terminus of the plasma membrane Nha1 antiporter plays an important role in the immediate cell response to hypo-osmotic shock which prevents an excessive loss of ions and water []. This protein is found C-terminal to IPR006153 from INTERPRO. ; GO: 0015385 sodium:hydrogen antiporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=62.59 E-value=3.1 Score=40.92 Aligned_cols=21 Identities=29% Similarity=0.705 Sum_probs=16.9
Q ss_pred eEEEeecCCCchhhhhhcchh
Q psy4087 99 EVLVVENENGEVVREFMKDTD 119 (249)
Q Consensus 99 EVlIve~e~Geivre~~~dtd 119 (249)
+.||||||+|||||.+-..+.
T Consensus 254 NtIIVEdEDGEVIKrY~Ip~~ 274 (434)
T PF08619_consen 254 NTIIVEDEDGEVIKRYKIPSH 274 (434)
T ss_pred CEEEEecCCCceEEEEecCCC
Confidence 468999999999987765554
No 8
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=62.24 E-value=8.2 Score=25.99 Aligned_cols=32 Identities=22% Similarity=0.469 Sum_probs=25.5
Q ss_pred HHHhhhhhccCCChhhhhHhHHHHHHHHHhhhh
Q psy4087 167 LCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCE 199 (249)
Q Consensus 167 LCWAIGSISGam~ee~Ek~Flv~vIk~LL~LcE 199 (249)
-|||+|.+++...+..+. ++..++..|+.+-+
T Consensus 7 A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~ 38 (55)
T PF13513_consen 7 AAWALGRLAEGCPELLQP-YLPELLPALIPLLQ 38 (55)
T ss_dssp HHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTT
T ss_pred HHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHc
Confidence 499999988777766555 88889988886664
No 9
>KOG1241|consensus
Probab=57.39 E-value=1.9e+02 Score=31.11 Aligned_cols=186 Identities=16% Similarity=0.224 Sum_probs=113.4
Q ss_pred CchhHHHHHHHHHHHHHH---HHHhhCCCCCCCCCCCccCCCCCCCccchhHHHHHHhhHHHHHHHHHHHHhhcCCCceE
Q psy4087 24 DEVEIFKICLEYWNALSS---DLYRESPYMSSASGLPIMDLPNNKSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKPEEV 100 (249)
Q Consensus 24 ~d~EiFkicleyW~~~~~---~ly~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~Y~~il~~lr~v~I~~M~kPeEV 100 (249)
+++||=--.+|||+.+.. |++.|..--.. . +. + |..+.+=..-+..|-+++.+-+.|-+|
T Consensus 271 ~~deValQaiEFWsticeEEiD~~~e~~e~~d-~------~~-------~--p~~~~fa~~a~~~v~P~Ll~~L~kqde- 333 (859)
T KOG1241|consen 271 DNDEVALQAIEFWSTICEEEIDLAIEYGEAVD-Q------GL-------P--PSSKYFARQALQDVVPVLLELLTKQDE- 333 (859)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-c------CC-------C--chhhHHHHHHHhHhhHHHHHHHHhCCC-
Confidence 788999999999998874 44433321000 1 11 0 123444467788899999999999765
Q ss_pred EEeecCCCchhhhhhcchhhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHhhcCCCCCcccchhHHHhhhhhccCCCh
Q psy4087 101 LVVENENGEVVREFMKDTDSINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHE 180 (249)
Q Consensus 101 lIve~e~Geivre~~~dtd~i~lYk~mretLvyLt~Ld~~dt~~im~ekL~~q~~~~~ws~~~lN~LCWAIGSISGam~e 180 (249)
|++| |.=+..|.---||--++.+-.+|+..-....+...+.++.|- +---=--|.|||--.-.+
T Consensus 334 ----~~d~----------DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr--~reaavmAFGSIl~gp~~ 397 (859)
T KOG1241|consen 334 ----DDDD----------DDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWR--NREAAVMAFGSILEGPEP 397 (859)
T ss_pred ----Cccc----------ccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchh--hhhHHHHHHHhhhcCCch
Confidence 4333 334556777788888888888888887778887666655554 444456788998666555
Q ss_pred hhhhHhHHHHHHHHHhhhhhccCCcchHHhhhcceeeeccchHhHHhhHHHHHHHHHHHHhhhc
Q psy4087 181 EDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH 244 (249)
Q Consensus 181 e~Ek~Flv~vIk~LL~LcE~k~gk~nKAvIASnIMYvvgQYpRFLk~~w~fLktVv~KLfEFM~ 244 (249)
+.-+.....-++.++++-- ...--+|--.|-++-=|+.--| +...|-..|..++.-|.+-++
T Consensus 398 ~~Lt~iV~qalp~ii~lm~-D~sl~VkdTaAwtlgrI~d~l~-e~~~n~~~l~~~l~~l~~gL~ 459 (859)
T KOG1241|consen 398 DKLTPIVIQALPSIINLMS-DPSLWVKDTAAWTLGRIADFLP-EAIINQELLQSKLSALLEGLN 459 (859)
T ss_pred hhhhHHHhhhhHHHHHHhc-CchhhhcchHHHHHHHHHhhch-hhcccHhhhhHHHHHHHHHhh
Confidence 5555555555555555432 1111222223333333333333 556677777777777766665
No 10
>KOG3489|consensus
Probab=50.10 E-value=18 Score=28.33 Aligned_cols=43 Identities=21% Similarity=0.488 Sum_probs=33.1
Q ss_pred cccchhHHH--hhhhhccCCChhhhh-------HhHHHHHHHHHhhhhhccC
Q psy4087 161 WKNLNTLCW--AIGSISGAMHEEDEK-------RFLVTVIKDLLGLCEQKKG 203 (249)
Q Consensus 161 ~~~lN~LCW--AIGSISGam~ee~Ek-------~Flv~vIk~LL~LcE~k~g 203 (249)
.+.++.+|| +||++...|+...|. ||+.+-+--+=+|..++.|
T Consensus 31 VHqft~~CWdKCi~~~~sklds~~e~ClsnCV~RfiDts~~I~~r~~~~~~~ 82 (86)
T KOG3489|consen 31 VHQFTEICWDKCIEKPGSKLDSSEETCLSNCVNRFIDTSLFIVKRLAQMNQG 82 (86)
T ss_pred HHHHHHHHHHHHHcCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 458899999 799999888887774 8888877666666665554
No 11
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=49.35 E-value=18 Score=28.16 Aligned_cols=32 Identities=34% Similarity=0.641 Sum_probs=23.5
Q ss_pred EeecCCCchhhhhhcchhhHHHHHHHHHHHHHH
Q psy4087 102 VVENENGEVVREFMKDTDSINLYKNMRETLVYL 134 (249)
Q Consensus 102 Ive~e~Geivre~~~dtd~i~lYk~mretLvyL 134 (249)
|++.+.|+++|+ +..-+-+.+.+.|++..-.|
T Consensus 72 ViD~~T~eVIRq-IP~Ee~l~l~~~l~e~~Gll 103 (107)
T PF03646_consen 72 VIDKETGEVIRQ-IPPEELLDLAKRLRELVGLL 103 (107)
T ss_dssp EEETTT-SEEEE-E-HHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCcEEEe-CCcHHHHHHHHHHHHHhcee
Confidence 467889999996 66677889999999966443
No 12
>PRK08452 flagellar protein FlaG; Provisional
Probab=44.67 E-value=23 Score=29.25 Aligned_cols=31 Identities=32% Similarity=0.583 Sum_probs=25.1
Q ss_pred EeecCCCchhhhhhcchhhHHHHHHHHHHHHH
Q psy4087 102 VVENENGEVVREFMKDTDSINLYKNMRETLVY 133 (249)
Q Consensus 102 Ive~e~Geivre~~~dtd~i~lYk~mretLvy 133 (249)
|++.+.|+++|+ +..-+.+.+.+.|++..-.
T Consensus 88 VvD~~T~eVIRq-IP~Ee~L~l~~~m~e~~Gl 118 (124)
T PRK08452 88 VKEANGGKVIRE-IPSKEAIELMEYMRDVIGI 118 (124)
T ss_pred EEECCCCceeee-CCCHHHHHHHHHHHHhhhh
Confidence 468889999997 6777889999999986543
No 13
>PF11058 Ral: Antirestriction protein Ral ; InterPro: IPR022759 Ral alleviates restriction and enhances modification by the E.coli restriction and modification system [].
Probab=38.44 E-value=10 Score=27.45 Aligned_cols=21 Identities=43% Similarity=0.639 Sum_probs=15.1
Q ss_pred hhcCCCceEEEeecCCCchhhh
Q psy4087 92 SRMAKPEEVLVVENENGEVVRE 113 (249)
Q Consensus 92 ~~M~kPeEVlIve~e~Geivre 113 (249)
+-|+||||...| -|+|.+|..
T Consensus 25 ecmvkpeem~~v-~edgk~vdk 45 (66)
T PF11058_consen 25 ECMVKPEEMFPV-MEDGKYVDK 45 (66)
T ss_pred hhccCHHHhcee-cccCchhhh
Confidence 359999998765 455887753
No 14
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking
Probab=36.10 E-value=55 Score=32.80 Aligned_cols=95 Identities=13% Similarity=0.199 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEeecCCCchhhhhhcchhhHHHHHHHHHHHHHHhcCChh---hHHHHHHHHHHHhhcC
Q psy4087 80 APVLTKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNMRETLVYLTHLNYT---DTEQVMTQKLQQQVNG 156 (249)
Q Consensus 80 ~~il~~lr~v~I~~M~kPeEVlIve~e~Geivre~~~dtd~i~lYk~mretLvyLt~Ld~~---dt~~im~ekL~~q~~~ 156 (249)
...+.+|-.++++|...=-.+ + .=+.+..+.+-+-|.-+++.-|. +-.+-|+|.+..- .+
T Consensus 257 ~sLi~~L~pvlleRs~~Lfp~-----------~-----~y~~eV~rvlss~ll~lfk~~PsLvv~l~~~ilef~g~~-~~ 319 (459)
T PF14764_consen 257 GSLICQLLPVLLERSDALFPI-----------P-----QYQAEVRRVLSSQLLALFKRHPSLVVELSKEILEFLGSA-SN 319 (459)
T ss_pred HHHHHHHHHHHHHHHHHhcCC-----------h-----hHHHHHHHHHHHHHHHHHHhCcHHHHHhHHHHHHHhccc-cc
Confidence 345667777777775432110 1 12235677788888889998886 4444455544421 12
Q ss_pred CCCCcccchhHHHhhhhhccCCChhhhhHhHHHHHHHH
Q psy4087 157 TEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDL 194 (249)
Q Consensus 157 ~~ws~~~lN~LCWAIGSISGam~ee~Ek~Flv~vIk~L 194 (249)
..---.-+..||||||==++.. -.+|.-+.+|.+.
T Consensus 320 ~~~k~~l~~hlvWaIGEy~s~~---~d~rct~~~i~~~ 354 (459)
T PF14764_consen 320 IHSKEELFTHLVWAIGEYLSVS---YDRRCTVEQINEF 354 (459)
T ss_pred ccchhHHHHHHHHHHhcccccc---cCCccCHHHHHHH
Confidence 1222345688999999655544 2355555555544
No 15
>PF14426 Imm2: Immunity protein Imm2
Probab=33.63 E-value=38 Score=24.77 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=21.4
Q ss_pred hhccCCChhhhhHhHHHHHHHHHh
Q psy4087 173 SISGAMHEEDEKRFLVTVIKDLLG 196 (249)
Q Consensus 173 SISGam~ee~Ek~Flv~vIk~LL~ 196 (249)
-.||++.++.|++|..+.|..+|.
T Consensus 8 ILsgg~~pd~v~~~h~~~I~~~l~ 31 (60)
T PF14426_consen 8 ILSGGWHPDVVEMFHRNWIHKLLS 31 (60)
T ss_pred HHHccCChHHHHHHHHHHHHHHHH
Confidence 468999999999999999998873
No 16
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=32.39 E-value=38 Score=33.34 Aligned_cols=40 Identities=45% Similarity=0.709 Sum_probs=27.2
Q ss_pred HHHhhh-hhccCCChhhhhHhHHH--HHHHHHhhhhhccCCcchHH
Q psy4087 167 LCWAIG-SISGAMHEEDEKRFLVT--VIKDLLGLCEQKKGKDNKAI 209 (249)
Q Consensus 167 LCWAIG-SISGam~ee~Ek~Flv~--vIk~LL~LcE~k~gk~nKAv 209 (249)
-||||. +-||+....+--|+||. +||.|-+| -.+-|||++
T Consensus 389 ACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~---L~~~dNkii 431 (526)
T COG5064 389 ACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDL---LDVVDNKII 431 (526)
T ss_pred HHHHHHhhhccccCCchHHHHHHHccchhHHHHH---HhccCccch
Confidence 499996 56788887776777776 67755444 446667654
No 17
>PHA00022 VII minor coat protein
Probab=29.05 E-value=19 Score=22.47 Aligned_cols=13 Identities=31% Similarity=1.037 Sum_probs=10.5
Q ss_pred hHHHhhhhhccCC
Q psy4087 166 TLCWAIGSISGAM 178 (249)
Q Consensus 166 ~LCWAIGSISGam 178 (249)
-+|.+.|+|+|.-
T Consensus 15 Vi~FgLG~It~G~ 27 (28)
T PHA00022 15 VICFGLGAITGGQ 27 (28)
T ss_pred HHhhccceeecCc
Confidence 4699999999853
No 18
>PF05421 DUF751: Protein of unknown function (DUF751); InterPro: IPR008470 This family, Ycf33, contains several plant, cyanobacterial and algal chlorplast encoded proteins of unknown function. The family is exclusively found in phototrophic organisms and may therefore play a role in photosynthesis.
Probab=28.37 E-value=19 Score=26.32 Aligned_cols=10 Identities=40% Similarity=1.039 Sum_probs=7.8
Q ss_pred eccchHhHHh
Q psy4087 218 VGQYPRFLRA 227 (249)
Q Consensus 218 vgQYpRFLk~ 227 (249)
|++||||+-+
T Consensus 5 v~RYpry~is 14 (61)
T PF05421_consen 5 VSRYPRYFIS 14 (61)
T ss_pred HHHhhHHHHH
Confidence 5789999863
No 19
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=27.38 E-value=2.8e+02 Score=21.95 Aligned_cols=70 Identities=11% Similarity=0.217 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHhhcCCCCCcccchhHHHhhhhhccCCChhhhhHhHHHHHH
Q psy4087 122 NLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIK 192 (249)
Q Consensus 122 ~lYk~mretLvyLt~Ld~~dt~~im~ekL~~q~~~~~ws~~~lN~LCWAIGSISGam~ee~Ek~Flv~vIk 192 (249)
..|+.|++.+--...-+.+++..--.+.|...++...=.-+..|.|.=+-|=.+..+++ +||+.+..+|.
T Consensus 10 ~~y~~lg~~va~~~~~~~~~~~~~Y~~~l~~al~~~~~~~~~~Nvl~Hi~Gyfk~~ls~-~EK~~~~~~i~ 79 (117)
T PF08349_consen 10 KIYRELGRLVANAGKRPLEEVFEEYEELLMEALSKPPTRGSHINVLQHIFGYFKKKLSS-EEKQHFLDLIE 79 (117)
T ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHhCCH-HHHHHHHHHHH
Confidence 56888888777666655555555555555555554455557899999999999999985 56665555544
No 20
>PRK08868 flagellar protein FlaG; Provisional
Probab=25.28 E-value=69 Score=27.29 Aligned_cols=27 Identities=19% Similarity=0.618 Sum_probs=20.5
Q ss_pred EeecCCCchhhhhhcchhhHHHHHHHHH
Q psy4087 102 VVENENGEVVREFMKDTDSINLYKNMRE 129 (249)
Q Consensus 102 Ive~e~Geivre~~~dtd~i~lYk~mre 129 (249)
|++.+.|+++|+ +..-+-+.+.+.|.+
T Consensus 106 ViD~~T~EVIRQ-IP~Ee~L~la~~l~e 132 (144)
T PRK08868 106 IYEASTGDIIRQ-IPDEEMLEVLRRLAE 132 (144)
T ss_pred EEECCCCceeee-CCCHHHHHHHHHHHH
Confidence 568899999996 666666777777664
No 21
>PF06404 PSK: Phytosulfokine precursor protein (PSK); InterPro: IPR009438 This family consists of several plant specific phytosulfokine precursor proteins. Phytosulfokines, are active as either a pentapeptide or a C-terminally truncated tetrapeptide. These compounds were first isolated because of their ability to stimulate cell division in somatic embryo cultures of Asparagus officinalis [].; GO: 0008083 growth factor activity, 0008283 cell proliferation, 0005576 extracellular region
Probab=25.02 E-value=31 Score=26.45 Aligned_cols=16 Identities=50% Similarity=0.717 Sum_probs=14.3
Q ss_pred HHHHHHHHHhcCChhhHH
Q psy4087 126 NMRETLVYLTHLNYTDTE 143 (249)
Q Consensus 126 ~mretLvyLt~Ld~~dt~ 143 (249)
.||.||+ +|+|+-.|+
T Consensus 62 L~RRtL~--AHlDYIYTQ 77 (81)
T PF06404_consen 62 LMRRTLA--AHLDYIYTQ 77 (81)
T ss_pred HHHHHHH--HHhhheecc
Confidence 5999999 999998876
No 22
>PRK07738 flagellar protein FlaG; Provisional
Probab=24.60 E-value=68 Score=26.33 Aligned_cols=29 Identities=31% Similarity=0.581 Sum_probs=22.8
Q ss_pred EeecCCCchhhhhhcchhhHHHHHHHHHHH
Q psy4087 102 VVENENGEVVREFMKDTDSINLYKNMRETL 131 (249)
Q Consensus 102 Ive~e~Geivre~~~dtd~i~lYk~mretL 131 (249)
|++.+.|+++|+ +.--+-+.+.+.|++..
T Consensus 81 VvD~~T~EVIRQ-IPpEe~L~l~~~m~e~~ 109 (117)
T PRK07738 81 VVDERTNEVIRE-IPPKKLLDMYAAMMEFV 109 (117)
T ss_pred EEECCCCeeeee-CCCHHHHHHHHHHHHHh
Confidence 568889999997 55567788888888754
No 23
>PF12194 Ste5_C: Protein kinase Fus3-binding; InterPro: IPR021106 The Saccharomyces cerevisiae pheromone response pathway involves a cascade of 3 MAP kinases Ste11, Ste7, and Fus3. Ste5 is an essential element of this cascade, acting as a scaffold for each of the MAP kinases prior to signalling []. This entry represents the Fus3-binding domain of Ste5, also known as the minimal scaffold domain. It acts as a co-catalyst, binding Fus3 and promoting its phosphorylation by Ste7 []. In the absence of this domain, Fus3 is an extremely poor substrate for Ste7. The requirement for both Ste7 and this domain in Fus3 activation ensures that Fus3 is selectively activated by the mating pathway and not by other pathways that also utilise Ste7.; PDB: 3FZE_A.
Probab=21.43 E-value=1.7e+02 Score=26.02 Aligned_cols=45 Identities=16% Similarity=0.377 Sum_probs=26.9
Q ss_pred HHHHHhhcCCCceEEEeecCCCchhhhhhcchhhHHHHHHHHHHHHHHh
Q psy4087 87 RYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNMRETLVYLT 135 (249)
Q Consensus 87 r~v~I~~M~kPeEVlIve~e~Geivre~~~dtd~i~lYk~mretLvyLt 135 (249)
..++=-|+.||++++||-- +=-..+++.+.+.+|++.|....-..
T Consensus 5 SSILSLKRerPd~L~ivlQ----iD~~Kl~~~~~~~i~Nsl~AL~~Kf~ 49 (191)
T PF12194_consen 5 SSILSLKRERPDDLVIVLQ----IDFRKLKEDDYIVIYNSLKALTLKFP 49 (191)
T ss_dssp HHHHHHHHT--SEEEEEEE----E-GGG--THHHHHHHHHHHHHHHH-T
T ss_pred hhhhhhhccCCCcEEEEEE----ecHHHhCCCcEEeehHHHHHHHcccC
Confidence 3445568899999988631 11234568899999999887765443
No 24
>PF11704 Folliculin: Vesicle coat protein involved in Golgi to plasma membrane transport; InterPro: IPR021713 In yeast cells this family functions in the regulated delivery of Gap1p (a general amino acid permease) to the cell surface, perhaps as a component of a post-Golgi secretory-vesicle coat complex []. Birt-Hogg-Dube (BHD)4 syndrome is an autosomal dominant disorder characterised by hamartomas of skin follicles, lung cysts, spontaneous pneumothorax, and renal cell carcinoma. Folliculin is the protein from the BHD4 gene and is found to have no significant homology to any other human proteins. It is expressed in most tissues. These same symptoms also occur in TSC or tuberous sclerosis complex, suggesting that the same pathway is involved, and it is likely that the target is the down-stream Tor2 - an essential gene. Folliculin appears to bind Tor2, and down-regulation of Tor2 activity leads to up-regulation of nitrogen responsive genes including membrane transporters and amino acid permeases [].
Probab=20.88 E-value=1.1e+02 Score=26.23 Aligned_cols=34 Identities=15% Similarity=0.401 Sum_probs=29.0
Q ss_pred hcceeeeccchHhHHhhHHHHHHHHHHHHhhhcC
Q psy4087 212 SNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHG 245 (249)
Q Consensus 212 SnIMYvvgQYpRFLk~~w~fLktVv~KLfEFM~e 245 (249)
-+++|+++.--+-|-++|.||....+|+.+.+..
T Consensus 68 Y~li~l~~d~~~~L~~~w~~i~~~f~~ii~~iq~ 101 (167)
T PF11704_consen 68 YCLIVLSDDKMKKLLNNWPFISSHFSKIIEWIQQ 101 (167)
T ss_pred EEEEEEeCChhHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3788888887777999999999999999988753
No 25
>PF02526 GBP_repeat: Glycophorin-binding protein; InterPro: IPR003681 The glycophorin-binding protein contains a tandem repeat. The repeated sequence determines the binding domain for an erythrocyte receptor binding protein of Plasmodium falciparum, the malarial parasite []. Erythrocyte invasion by the malarial merozoite is a receptor-mediated process, an obligatory step in the development of the parasite. The P. falciparum protein binds to the erythrocyte receptor glycophorin.
Probab=20.86 E-value=1.1e+02 Score=20.13 Aligned_cols=33 Identities=21% Similarity=0.520 Sum_probs=22.2
Q ss_pred cCCCchhhhhhcchhhHHHHHHHHHHHH-HHhcCChhh
Q psy4087 105 NENGEVVREFMKDTDSINLYKNMRETLV-YLTHLNYTD 141 (249)
Q Consensus 105 ~e~Geivre~~~dtd~i~lYk~mretLv-yLt~Ld~~d 141 (249)
|.+|+|+|+.-.|.+ |..--++|. .|||-|+.|
T Consensus 4 dpegqimk~yaadpe----yrkh~~v~yqil~~tdpnd 37 (38)
T PF02526_consen 4 DPEGQIMKAYAADPE----YRKHLNVLYQILTNTDPND 37 (38)
T ss_pred CchhHHHHHHhcCHH----HHHHHHHHHHHHccCCCCC
Confidence 568999999998876 555444443 456666543
Done!