Query psy4087
Match_columns 249
No_of_seqs 112 out of 161
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 16:32:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4087.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4087hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gjx_A Exportin-1; transport, 100.0 3.8E-63 1.3E-67 515.6 22.2 238 4-248 343-580 (1073)
2 4hat_C Exportin-1; heat repeat 100.0 3.7E-48 1.3E-52 401.1 19.3 218 4-247 336-553 (1023)
3 3m1i_C Exportin-1; heat repeat 100.0 1.8E-31 6.2E-36 273.0 18.9 216 6-247 338-553 (1049)
4 2x19_B Importin-13; nuclear tr 99.7 4.9E-18 1.7E-22 170.0 8.3 202 8-245 331-540 (963)
5 2x1g_F Cadmus; transport prote 99.2 3.6E-10 1.2E-14 113.8 15.1 205 8-244 344-556 (971)
6 3ibv_A Exportin-T; karyopherin 98.3 1.6E-06 5.4E-11 89.7 10.7 211 8-247 328-550 (980)
7 2bpt_A Importin beta-1 subunit 97.8 0.00071 2.4E-08 65.7 16.7 192 17-245 271-465 (861)
8 4fdd_A Transportin-1; heat rep 97.7 0.0002 6.8E-09 71.0 10.8 192 12-247 256-455 (852)
9 3a6p_A Exportin-5; exportin-5, 97.2 0.00039 1.3E-08 73.1 6.4 201 10-244 349-582 (1204)
10 1qgr_A Protein (importin beta 96.7 0.02 6.8E-07 55.6 13.2 196 13-245 260-462 (876)
11 1wa5_C Importin alpha RE-expor 95.4 0.077 2.6E-06 53.7 10.7 158 81-246 333-508 (960)
12 1ibr_B P95, importin beta-1 su 94.3 0.17 5.9E-06 44.9 8.9 186 23-243 270-460 (462)
13 2x1g_F Cadmus; transport prote 59.0 7.3 0.00025 38.9 4.1 76 161-245 520-595 (971)
14 2hc5_A ORF 99, hypothetical pr 43.6 17 0.00057 28.5 3.1 32 102-134 73-104 (117)
15 2e9x_A DNA replication complex 39.8 53 0.0018 26.2 5.7 34 163-197 86-124 (149)
16 4fdd_A Transportin-1; heat rep 37.8 37 0.0013 33.2 5.3 85 146-231 712-796 (852)
17 2x19_B Importin-13; nuclear tr 31.8 14 0.00048 36.6 1.1 77 161-245 503-579 (963)
18 3m1i_C Exportin-1; heat repeat 31.6 16 0.00056 37.1 1.6 77 166-245 519-600 (1049)
19 3fze_A Protein STE5; alpha/bet 25.6 97 0.0033 26.5 5.1 49 83-135 3-52 (196)
20 2o3l_A Hypothetical protein; s 24.2 25 0.00085 26.2 1.0 46 161-214 21-68 (85)
21 1qgr_A Protein (importin beta 22.0 3E+02 0.01 26.1 8.5 48 154-202 700-747 (876)
22 4fcc_A Glutamate dehydrogenase 21.8 91 0.0031 29.7 4.7 38 73-110 25-77 (450)
23 2o4t_A BH3976 protein; LEFT-ha 21.6 34 0.0011 26.3 1.3 46 162-215 19-66 (100)
24 1ibr_B P95, importin beta-1 su 21.6 93 0.0032 27.0 4.4 99 136-244 82-182 (462)
No 1
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=100.00 E-value=3.8e-63 Score=515.64 Aligned_cols=238 Identities=78% Similarity=1.230 Sum_probs=220.6
Q ss_pred hhhHHHHHHHHHHHHhhcCcCchhHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCccCCCCCCCccchhHHHHHHhhHHHH
Q psy4087 4 LESDEWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSHTMDEAVARRQFYAPVL 83 (249)
Q Consensus 4 ~~~~~~l~~~l~~lv~iS~i~d~EiFkicleyW~~~~~~ly~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~Y~~il 83 (249)
|+.++.+..||+||+++|.++|.|+||+|+|||+.|+.+||++.+++...+ |++.|+ .+++.+.|+..|.+++
T Consensus 343 p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~--~~~~~~-----~~~~~~~~~~~y~~i~ 415 (1073)
T 3gjx_A 343 LNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSAS--PLLSGS-----QHFDIPPRRQLYLTVL 415 (1073)
T ss_dssp GGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCS--SCTTSS-----CCSCSCHHHHTTHHHH
T ss_pred ccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhcccccccc--cccccc-----ccccchhHHHHHHHHH
Confidence 566889999999999999999999999999999999999999876431111 332221 1233567999999999
Q ss_pred HHHHHHHHhhcCCCceEEEeecCCCchhhhhhcchhhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHhhcCCCCCccc
Q psy4087 84 TKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKN 163 (249)
Q Consensus 84 ~~lr~v~I~~M~kPeEVlIve~e~Geivre~~~dtd~i~lYk~mretLvyLt~Ld~~dt~~im~ekL~~q~~~~~ws~~~ 163 (249)
++||.+||+||+||+||+++|||+||++||+++|||++++||.||+||+||||+++++|+.+|.++|+++++|++|+|.+
T Consensus 416 ~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i~~~~l~~~~~~~~~sW~~ 495 (1073)
T 3gjx_A 416 SKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTEIIMTKKLQNQVNGTEWSWKN 495 (1073)
T ss_dssp HHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSCCCCHHH
T ss_pred HHHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHhhhhhccCCChhhhhHhHHHHHHHHHhhhhhccCCcchHHhhhcceeeeccchHhHHhhHHHHHHHHHHHHhhh
Q psy4087 164 LNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFM 243 (249)
Q Consensus 164 lN~LCWAIGSISGam~ee~Ek~Flv~vIk~LL~LcE~k~gk~nKAvIASnIMYvvgQYpRFLk~~w~fLktVv~KLfEFM 243 (249)
+|++|||+|||||+|.++.|++||++||+.|++|||.++||||||+|||+|||++|||||||++||+||++|++||||||
T Consensus 496 lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m 575 (1073)
T 3gjx_A 496 LNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFM 575 (1073)
T ss_dssp HHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy4087 244 HGPSY 248 (249)
Q Consensus 244 ~e~~~ 248 (249)
||+|.
T Consensus 576 ~~~~~ 580 (1073)
T 3gjx_A 576 HETHD 580 (1073)
T ss_dssp TCCST
T ss_pred hcCCH
Confidence 99875
No 2
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=100.00 E-value=3.7e-48 Score=401.06 Aligned_cols=218 Identities=58% Similarity=1.054 Sum_probs=209.5
Q ss_pred hhhHHHHHHHHHHHHhhcCcCchhHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCccCCCCCCCccchhHHHHHHhhHHHH
Q psy4087 4 LESDEWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSHTMDEAVARRQFYAPVL 83 (249)
Q Consensus 4 ~~~~~~l~~~l~~lv~iS~i~d~EiFkicleyW~~~~~~ly~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~Y~~il 83 (249)
|+.++.+..+|+||+.++.++|.|+|++|+|||+.++.++|.+ + .|+..|.+++
T Consensus 336 ~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e-~-------------------------~~~~~~~~~~ 389 (1023)
T 4hat_C 336 ESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYE-P-------------------------LKKHIYEEIC 389 (1023)
T ss_dssp GGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTS-T-------------------------TTGGGGHHHH
T ss_pred cchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhc-h-------------------------HHHHHHHHHH
Confidence 5668888899999999999999999999999999999999864 1 1567899999
Q ss_pred HHHHHHHHhhcCCCceEEEeecCCCchhhhhhcchhhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHhhcCCCCCccc
Q psy4087 84 TKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKN 163 (249)
Q Consensus 84 ~~lr~v~I~~M~kPeEVlIve~e~Geivre~~~dtd~i~lYk~mretLvyLt~Ld~~dt~~im~ekL~~q~~~~~ws~~~ 163 (249)
++|+.++|+||++|+||+|++||+|+++||+++|+|+++.|+.||++|+|+|+++.+||..+|.++|.+++++++|+|..
T Consensus 390 ~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~ 469 (1023)
T 4hat_C 390 SQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHN 469 (1023)
T ss_dssp HHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHSSTTCCHHH
T ss_pred HHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred chhHHHhhhhhccCCChhhhhHhHHHHHHHHHhhhhhccCCcchHHhhhcceeeeccchHhHHhhHHHHHHHHHHHHhhh
Q psy4087 164 LNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFM 243 (249)
Q Consensus 164 lN~LCWAIGSISGam~ee~Ek~Flv~vIk~LL~LcE~k~gk~nKAvIASnIMYvvgQYpRFLk~~w~fLktVv~KLfEFM 243 (249)
+++.|||+|||||++.++.|++|++++++.|++||+.++|||+|++||+++||++||||+|++.||+||++|+++||++|
T Consensus 470 ~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l 549 (1023)
T 4hat_C 470 INTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFM 549 (1023)
T ss_dssp HHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q psy4087 244 HGPS 247 (249)
Q Consensus 244 ~e~~ 247 (249)
+++|
T Consensus 550 ~~~~ 553 (1023)
T 4hat_C 550 HETH 553 (1023)
T ss_dssp TCSC
T ss_pred hcCC
Confidence 9876
No 3
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.97 E-value=1.8e-31 Score=272.96 Aligned_cols=216 Identities=58% Similarity=1.049 Sum_probs=200.8
Q ss_pred hHHHHHHHHHHHHhhcCcCchhHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCccCCCCCCCccchhHHHHHHhhHHHHHH
Q psy4087 6 SDEWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSHTMDEAVARRQFYAPVLTK 85 (249)
Q Consensus 6 ~~~~l~~~l~~lv~iS~i~d~EiFkicleyW~~~~~~ly~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~Y~~il~~ 85 (249)
..+.+...+++|+.++..+|.++++.|++||..++.++|.. + .+...|.+++.+
T Consensus 338 ~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~-~-------------------------~~~~~~~~~l~~ 391 (1049)
T 3m1i_C 338 LRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYE-P-------------------------LKKHIYEEICSQ 391 (1049)
T ss_dssp GHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHS-T-------------------------TCGGGGHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhc-h-------------------------hHHHHHHHHHHH
Confidence 45567778999999999999999999999999999987651 1 023467899999
Q ss_pred HHHHHHhhcCCCceEEEeecCCCchhhhhhcchhhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHhhcCCCCCcccch
Q psy4087 86 IRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLN 165 (249)
Q Consensus 86 lr~v~I~~M~kPeEVlIve~e~Geivre~~~dtd~i~lYk~mretLvyLt~Ld~~dt~~im~ekL~~q~~~~~ws~~~lN 165 (249)
|..+++.+|..|+|+...+||+||.+|++.+|+|+.+.|+.++++|.+|+++.++++..++.+.+.+.++++.|+|...+
T Consensus 392 Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~e 471 (1049)
T 3m1i_C 392 LRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNIN 471 (1049)
T ss_dssp HHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHH
T ss_pred HHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 99999999999999888889999999999999999999999999999999999999999999999999988899999999
Q ss_pred hHHHhhhhhccCCChhhhhHhHHHHHHHHHhhhhhccCCcchHHhhhcceeeeccchHhHHhhHHHHHHHHHHHHhhhcC
Q psy4087 166 TLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHG 245 (249)
Q Consensus 166 ~LCWAIGSISGam~ee~Ek~Flv~vIk~LL~LcE~k~gk~nKAvIASnIMYvvgQYpRFLk~~w~fLktVv~KLfEFM~e 245 (249)
+.|||+|||||++.++.|++|+..|++.|+++|+.+.|+++++++++.+||++|||++|++.||++|.+|+++||++|++
T Consensus 472 aal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~ 551 (1049)
T 3m1i_C 472 TLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHE 551 (1049)
T ss_dssp HHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q psy4087 246 PS 247 (249)
Q Consensus 246 ~~ 247 (249)
++
T Consensus 552 ~~ 553 (1049)
T 3m1i_C 552 TH 553 (1049)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 4
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.72 E-value=4.9e-18 Score=170.05 Aligned_cols=202 Identities=14% Similarity=0.300 Sum_probs=159.0
Q ss_pred HHHHHHHHHHHhhcCc-----CchhHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCccCCCCCCCccchhHHHHHHhhHHH
Q psy4087 8 EWFTTALHYLVLISEV-----DEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSHTMDEAVARRQFYAPV 82 (249)
Q Consensus 8 ~~l~~~l~~lv~iS~i-----~d~EiFkicleyW~~~~~~ly~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~Y~~i 82 (249)
+.+...+++|+.++.. .|.++...|++||..++.+++.- + . ...+.....|.++
T Consensus 331 ~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~-~---~-----------------~~~~~~~~~~~~~ 389 (963)
T 2x19_B 331 QSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSF-E---A-----------------EKQAVYQQVYRPV 389 (963)
T ss_dssp HHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTS-C---H-----------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhh-h---h-----------------hhhHHHHHHHHHH
Confidence 4566778899988875 46789999999999999865421 0 0 0124567889999
Q ss_pred HHHHHHHHHhhcCCCceEEEeecCCCchhhhhhcchhh-HHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHhhcC--CCC
Q psy4087 83 LTKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDS-INLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNG--TEW 159 (249)
Q Consensus 83 l~~lr~v~I~~M~kPeEVlIve~e~Geivre~~~dtd~-i~lYk~mretLvyLt~Ld~~dt~~im~ekL~~q~~~--~~w 159 (249)
+.+|..+++.+|.+|++.-. ++.+. + |.+. -+.-+.+.++|..++++.++++...+.+.+...++. ..-
T Consensus 390 l~~l~~~ll~~~~~p~~~~~-~~~~~----d---e~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~ 461 (963)
T 2x19_B 390 YFQLVDVLLHKAQFPSDEEY-GFWSS----D---EKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPY 461 (963)
T ss_dssp HHHHHHHHHHHHSCCCHHHH-HTSCH----H---HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSC
T ss_pred HHHHHHHHHHHHcCCCcccc-cCCCh----h---HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999987521 11000 0 1111 133467889999999999999999999999887721 124
Q ss_pred CcccchhHHHhhhhhccCCChhhhhHhHHHHHHHHHhhhhhccCCcchHHhhhcceeeeccchHhHHhhHHHHHHHHHHH
Q psy4087 160 SWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKL 239 (249)
Q Consensus 160 s~~~lN~LCWAIGSISGam~ee~Ek~Flv~vIk~LL~LcE~k~gk~nKAvIASnIMYvvgQYpRFLk~~w~fLktVv~KL 239 (249)
+|......|||+|+|++.+.+ .+++++.+++..|+++++ ++++ |.+.+++++|||++|+..|+++|.+|+++|
T Consensus 462 ~w~~~eaal~al~~i~~~~~~-~~~~~l~~l~~~l~~l~~-----~~~~-vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l 534 (963)
T 2x19_B 462 SWQHTEALLYGFQSIAETIDV-NYSDVVPGLIGLIPRISI-----SNVQ-LADTVMFTIGALSEWLADHPVMINSVLPLV 534 (963)
T ss_dssp CHHHHHHHHHHHHHHTTSCCS-SCCSHHHHHHHHGGGSCC-----CSHH-HHHHHHHHHHHTHHHHHHCHHHHTTTHHHH
T ss_pred chHHHHHHHHHHHHHHhhcCc-hhhHHHHHHHHHHHhCCC-----CcHH-HHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 789999999999999999876 568899999998888887 3455 899999999999999999999999999999
Q ss_pred HhhhcC
Q psy4087 240 FEFMHG 245 (249)
Q Consensus 240 fEFM~e 245 (249)
|++|++
T Consensus 535 ~~~l~~ 540 (963)
T 2x19_B 535 LHALGN 540 (963)
T ss_dssp HHHTTC
T ss_pred HHHhCC
Confidence 999975
No 5
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.16 E-value=3.6e-10 Score=113.85 Aligned_cols=205 Identities=12% Similarity=0.215 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHhhcCc-----CchhHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCccCCCCCCCccchhHHHHHHhhHHH
Q psy4087 8 EWFTTALHYLVLISEV-----DEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSHTMDEAVARRQFYAPV 82 (249)
Q Consensus 8 ~~l~~~l~~lv~iS~i-----~d~EiFkicleyW~~~~~~ly~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~Y~~i 82 (249)
+.+...++.|+.++.. +|.++...|++||..++.+..... ... ....+...|.++
T Consensus 344 ~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~-~~~-------------------~~~~~~~~~~~~ 403 (971)
T 2x1g_F 344 ILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMS-NDE-------------------QKHKCWEYIKPL 403 (971)
T ss_dssp HHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC---------------------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcc-ccc-------------------chHHHHHHHHHH
Confidence 4566677788887643 588999999999999987654211 000 012356778999
Q ss_pred HHHHHHHHHhhcCCCceEEEeecCCCchhhhhhcchhhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHhhcC---CCC
Q psy4087 83 LTKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNG---TEW 159 (249)
Q Consensus 83 l~~lr~v~I~~M~kPeEVlIve~e~Geivre~~~dtd~i~lYk~mretLvyLt~Ld~~dt~~im~ekL~~q~~~---~~w 159 (249)
+.+|..+++.+|..|++. +.++++.- . +.+--+.-+.+.++|..++++.++++...+.+.+...+.. ...
T Consensus 404 ~~~ll~~l~~~~~~p~~~---~~~~~d~~--e--~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~ 476 (971)
T 2x1g_F 404 YAHLTRILVRKSEQPDEK---SLAKWSSD--D--LECFRCYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPT 476 (971)
T ss_dssp HHHHHHHHHHHTSCCCTT---TTSCSCHH--H--HHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhcCCCcc---cccccCHh--H--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCC
Confidence 999999999999999753 11223211 0 1122234467888999999999988888888877765431 237
Q ss_pred CcccchhHHHhhhhhccCCChhhhhHhHHHHHHHHHhhhhhccCCcchHHhhhcceeeeccchHhHHhhHHHHHHHHHHH
Q psy4087 160 SWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKL 239 (249)
Q Consensus 160 s~~~lN~LCWAIGSISGam~ee~Ek~Flv~vIk~LL~LcE~k~gk~nKAvIASnIMYvvgQYpRFLk~~w~fLktVv~KL 239 (249)
+|......++|+|+|+..+.++. +..+..++.-|..|+.. |....|....++++|+|..|+..|+++|.+|+..|
T Consensus 477 ~w~~~eaal~~l~~iae~~~~~~-~~~l~~l~~~l~~l~~~----d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l 551 (971)
T 2x1g_F 477 HWTKLEACIYSFQSVAEHFGGEE-KRQIPRLMRVLAEIPYE----KLNVKLLGTALETMGSYCNWLMENPAYIPPAINLL 551 (971)
T ss_dssp CCHHHHHHHHHHHHTTTC-------CHHHHHHHHHHHSCTT----TSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhcChhh-hHHHHHHHHHHHhcCcc----ccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 89999999999999998887644 57888888866666641 33577899999999999999999999999999999
Q ss_pred Hhhhc
Q psy4087 240 FEFMH 244 (249)
Q Consensus 240 fEFM~ 244 (249)
+..|+
T Consensus 552 ~~~l~ 556 (971)
T 2x1g_F 552 VRGLN 556 (971)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99873
No 6
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=98.34 E-value=1.6e-06 Score=89.70 Aligned_cols=211 Identities=10% Similarity=0.116 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHhhcCcCchhHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCccCCCCCCCccchhHHHHHHhhHHHHHHHH
Q psy4087 8 EWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSHTMDEAVARRQFYAPVLTKIR 87 (249)
Q Consensus 8 ~~l~~~l~~lv~iS~i~d~EiFkicleyW~~~~~~ly~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~Y~~il~~lr 87 (249)
+.+..-++++++...-++.|+...+++||..++..+-..... . + -...|.+++.+|-
T Consensus 328 ~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~----~--~-----------------~~~~~~~~l~~Ll 384 (980)
T 3ibv_A 328 FQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSS----K--E-----------------LSASLKEFLKSLL 384 (980)
T ss_dssp HHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTS----C--C-----------------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhcccc----c--c-----------------ccHHHHHHHHHHH
Confidence 455567888888888899999999999999988754322110 0 0 0124789999999
Q ss_pred HHHHhhcCCCceEEEeecCCCchhhhhhcchhhHHHHHHHHHHHHHHhcCChhhHHH----HHHHHHHHhhc-CCCCCcc
Q psy4087 88 YIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNMRETLVYLTHLNYTDTEQ----VMTQKLQQQVN-GTEWSWK 162 (249)
Q Consensus 88 ~v~I~~M~kPeEVlIve~e~Geivre~~~dtd~i~lYk~mretLvyLt~Ld~~dt~~----im~ekL~~q~~-~~~ws~~ 162 (249)
.+++.||.-|++-- .+++|+ .-.+.+-.++=+.++..+--++.++++.+.. .+...+++.+. ++.-+|.
T Consensus 385 ~~li~k~~yp~d~~--~~~~~d----~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~ 458 (980)
T 3ibv_A 385 EAIIKKMKYDESQE--WDDDPD----SEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQ 458 (980)
T ss_dssp HHHHHTTSCCTTCC--CCCCSS----SSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHccCCCccc--cccccc----hhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHH
Confidence 99999999998731 111111 0011122234466774444566778888788 45544444332 2345789
Q ss_pred cchhHHHhhhhhccCCChh-----hhhHhHHHHHHHHHhhhhhccCCcchHHhhhcceeeeccchHhHHhhHHHHHHHHH
Q psy4087 163 NLNTLCWAIGSISGAMHEE-----DEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVN 237 (249)
Q Consensus 163 ~lN~LCWAIGSISGam~ee-----~Ek~Flv~vIk~LL~LcE~k~gk~nKAvIASnIMYvvgQYpRFLk~~w~fLktVv~ 237 (249)
.+-.--.|+|+++=++... .+..-+..++.-|..|.+..-..+....|..-.+.++|+|.+|+..|.++|..|++
T Consensus 459 ~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~ 538 (980)
T 3ibv_A 459 LIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIE 538 (980)
T ss_dssp HHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Confidence 9999999999999887652 23444555666666666655666778889999999999999999999999999999
Q ss_pred HHHh--hhcCCC
Q psy4087 238 KLFE--FMHGPS 247 (249)
Q Consensus 238 KLfE--FM~e~~ 247 (249)
-++. -+|.++
T Consensus 539 ~ll~~~gl~~~~ 550 (980)
T 3ibv_A 539 YFVGPRGIHNTN 550 (980)
T ss_dssp HHTSTTTTTCCC
T ss_pred HHhccccccCCC
Confidence 9888 776554
No 7
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.79 E-value=0.00071 Score=65.71 Aligned_cols=192 Identities=11% Similarity=0.219 Sum_probs=127.1
Q ss_pred HHhhcCcCchhHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCccCCCCCCCccchhHHHHHHhhHHHHHHHHHHHHhhcCC
Q psy4087 17 LVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSHTMDEAVARRQFYAPVLTKIRYIMVSRMAK 96 (249)
Q Consensus 17 lv~iS~i~d~EiFkicleyW~~~~~~ly~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~Y~~il~~lr~v~I~~M~k 96 (249)
++....-.+.++...|+++|..++.....-.......+..|.. ......+++..+...++..|.+
T Consensus 271 ~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~il~~ll~~l~~ 335 (861)
T 2bpt_A 271 TIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQ---------------SYNFALSSIKDVVPNLLNLLTR 335 (861)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCC---------------CCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchh---------------hHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344677999999999999987642100000000000100 0112356678888899999988
Q ss_pred CceEEEeecCCCchhhhhhcchhhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHhhcCCCCCcccchhHHHhhhhhcc
Q psy4087 97 PEEVLVVENENGEVVREFMKDTDSINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISG 176 (249)
Q Consensus 97 PeEVlIve~e~Geivre~~~dtd~i~lYk~mretLvyLt~Ld~~dt~~im~ekL~~q~~~~~ws~~~lN~LCWAIGSISG 176 (249)
++| |+ |.|+-+..+...++|..|+.-..+++...+.+.+...+++. +|..-..-||++|+|+.
T Consensus 336 ~~~-----d~----------~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~--~~~~r~~a~~~l~~i~~ 398 (861)
T 2bpt_A 336 QNE-----DP----------EDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITAD--NWRNREAAVMAFGSIMD 398 (861)
T ss_dssp CCC-----C-----------CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHTSS
T ss_pred ccc-----cc----------ccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCC--ChhHHHHHHHHHHHHHc
Confidence 753 11 11223556677788887776555666667777777766554 46677888999999998
Q ss_pred CCChhhhhHhHHHHHHHHHhhhhhccCCcchHHhhhcceeeeccchHhHHhh---HHHHHHHHHHHHhhhcC
Q psy4087 177 AMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAH---WKFLKTVVNKLFEFMHG 245 (249)
Q Consensus 177 am~ee~Ek~Flv~vIk~LL~LcE~k~gk~nKAvIASnIMYvvgQYpRFLk~~---w~fLktVv~KLfEFM~e 245 (249)
...++.-+.++..++..|+..+.. ....|....++.+|++.+++..+ .+++..++..|++.+++
T Consensus 399 ~~~~~~~~~~l~~il~~l~~~l~d-----~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~ 465 (861)
T 2bpt_A 399 GPDKVQRTYYVHQALPSILNLMND-----QSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQD 465 (861)
T ss_dssp SSCHHHHHHHHHHHHHHHHHGGGC-----SCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCC-----CcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhcc
Confidence 776455567788888888877642 24556667788999999999875 67899999999988865
No 8
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.66 E-value=0.0002 Score=71.05 Aligned_cols=192 Identities=17% Similarity=0.291 Sum_probs=132.7
Q ss_pred HHHHHHHhhcCcCchhHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCccCCCCCCCccchhHHHHHHhhHHHHHHHHHHHH
Q psy4087 12 TALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSHTMDEAVARRQFYAPVLTKIRYIMV 91 (249)
Q Consensus 12 ~~l~~lv~iS~i~d~EiFkicleyW~~~~~~ly~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~Y~~il~~lr~v~I 91 (249)
..+.+++....-+|.++=..+++||..++.. +. -+....+.+.++..+++
T Consensus 256 ~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~-----~~-------------------------~~~~~~~~~~~l~p~ll 305 (852)
T 4fdd_A 256 NIVEYMLQRTQDQDENVALEACEFWLTLAEQ-----PI-------------------------CKDVLVRHLPKLIPVLV 305 (852)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTS-----TT-------------------------HHHHHTTTHHHHHHHHH
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHhcc-----hh-------------------------HHHHHHHHHHHHHHHHH
Confidence 3455566665557788999999999775531 00 11223556778888888
Q ss_pred hhcCCCceEEE-e----ecCCCchhhhhhcch-hhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHhhcCCCCCcccch
Q psy4087 92 SRMAKPEEVLV-V----ENENGEVVREFMKDT-DSINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLN 165 (249)
Q Consensus 92 ~~M~kPeEVlI-v----e~e~Geivre~~~dt-d~i~lYk~mretLvyLt~Ld~~dt~~im~ekL~~q~~~~~ws~~~lN 165 (249)
..|.-+++=.. . ++|+++ .|. +.-.+.+..-.+|-.|+...++++...+...+...++++ +|..-.
T Consensus 306 ~~l~~~e~d~~~~~~d~~ed~~~------dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~--~~~~R~ 377 (852)
T 4fdd_A 306 NGMKYSDIDIILLKGDVEGGSGG------DDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHH--EWVVKE 377 (852)
T ss_dssp HHTSCCHHHHHHHHC------------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCS--SHHHHH
T ss_pred HHcCCcHhHHHHhcCCccccccc------ccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC--CHHHHH
Confidence 88854431100 0 001110 000 223456677788888888777787888888888777554 577778
Q ss_pred hHHHhhhhhccCCChhhhhHhHHHHHHHHHhhhhhccCCcchHHhhhcceeeeccchHhHHh--hHHHHHHHHHHHHhhh
Q psy4087 166 TLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRA--HWKFLKTVVNKLFEFM 243 (249)
Q Consensus 166 ~LCWAIGSISGam~ee~Ek~Flv~vIk~LL~LcE~k~gk~nKAvIASnIMYvvgQYpRFLk~--~w~fLktVv~KLfEFM 243 (249)
.-+||+|+|+....+..+ .++..++..|+.+.. |....|.+..++.+|++..++.. +..++..++..|++.+
T Consensus 378 aa~~alg~i~~~~~~~~~-~~l~~~l~~l~~~l~-----d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L 451 (852)
T 4fdd_A 378 SGILVLGAIAEGCMQGMI-PYLPELIPHLIQCLS-----DKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRI 451 (852)
T ss_dssp HHHHHHHHTTTTTHHHHG-GGHHHHHHHHHHHTT-----CSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcchHHHH-HHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 899999999998876555 588888888888773 45677888888999999998864 6889999999999988
Q ss_pred cCCC
Q psy4087 244 HGPS 247 (249)
Q Consensus 244 ~e~~ 247 (249)
++.+
T Consensus 452 ~d~~ 455 (852)
T 4fdd_A 452 LDSN 455 (852)
T ss_dssp TCSS
T ss_pred hCCC
Confidence 7653
No 9
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=97.19 E-value=0.00039 Score=73.13 Aligned_cols=201 Identities=17% Similarity=0.129 Sum_probs=120.1
Q ss_pred HHHHHHHHHhhcCcCchhHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCccCCCCCCCccchhHHHHHHhhHHHHHHHHHH
Q psy4087 10 FTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSHTMDEAVARRQFYAPVLTKIRYI 89 (249)
Q Consensus 10 l~~~l~~lv~iS~i~d~EiFkicleyW~~~~~~ly~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~Y~~il~~lr~v 89 (249)
+..-+++|+.+..-++.++...+++||..++++. .. . +...|.+++.+|..+
T Consensus 349 l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~----~~----~--------------------~~~~~~~~l~~Ll~v 400 (1204)
T 3a6p_A 349 FGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHE----IL----S--------------------RDPLLLAIIPKYLRA 400 (1204)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCT----TT----T--------------------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcc----cc----c--------------------ccHHHHHHHHHHHHH
Confidence 3345777887877899999999999998766431 00 0 112378899999999
Q ss_pred H---HhhcCCCceEE------EeecCCCchhhhhhcchhhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHhhcC----
Q psy4087 90 M---VSRMAKPEEVL------VVENENGEVVREFMKDTDSINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNG---- 156 (249)
Q Consensus 90 ~---I~~M~kPeEVl------Ive~e~Geivre~~~dtd~i~lYk~mretLvyLt~Ld~~dt~~im~ekL~~q~~~---- 156 (249)
+ +.||.=|++-- .-+|++|+ .|. +.+--++=+.+.++|.-++.+.++++...+.+.+..++..
T Consensus 401 l~~~l~k~~yp~~~~~~~~~~~~~D~d~~--~E~--~~~f~~~Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~ 476 (1204)
T 3a6p_A 401 SMTNLVKMGFPSKTDSPSCEYSRFDFDSD--EDF--NAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDA 476 (1204)
T ss_dssp HHHHHSCCCCSSCCSSTHHHHHHHHCSSH--HHH--HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC---
T ss_pred HHHHHHHhcCccccCCcchhhhhcccCCc--HHH--HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhcc
Confidence 9 99998887421 00111111 000 0122344467888999999999999998777777655431
Q ss_pred C-CCC---cc---------------cchhHHHhhhhhccCCChhhhh-HhHHHHHHHHHhhhhhccCCcchHHhhhccee
Q psy4087 157 T-EWS---WK---------------NLNTLCWAIGSISGAMHEEDEK-RFLVTVIKDLLGLCEQKKGKDNKAIIASNIMY 216 (249)
Q Consensus 157 ~-~ws---~~---------------~lN~LCWAIGSISGam~ee~Ek-~Flv~vIk~LL~LcE~k~gk~nKAvIASnIMY 216 (249)
. .|. +. ...+.--+++|+...+..-.|+ .....++..|+.+|-.-..++-+ +..-.+.
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~--l~~~~i~ 554 (1204)
T 3a6p_A 477 GSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPL--ILSCVLT 554 (1204)
T ss_dssp --------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHH--HHHHHHH
T ss_pred cccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChH--HHHHHHH
Confidence 1 221 11 1111222566665444111111 01112344555544332233444 4455567
Q ss_pred eeccchHhHHhhHHHHHHHHHHHHhhhc
Q psy4087 217 VVGQYPRFLRAHWKFLKTVVNKLFEFMH 244 (249)
Q Consensus 217 vvgQYpRFLk~~w~fLktVv~KLfEFM~ 244 (249)
++|.|.+|+..|..+|..|++++|.-+.
T Consensus 555 ~l~~l~~~~~~~p~~L~~vL~~ll~~l~ 582 (1204)
T 3a6p_A 555 NVSALFPFVTYRPEFLPQVFSKLFSSVT 582 (1204)
T ss_dssp HHHHHGGGGGTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHhhc
Confidence 7888999999999999999999997654
No 10
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=96.68 E-value=0.02 Score=55.64 Aligned_cols=196 Identities=16% Similarity=0.256 Sum_probs=115.2
Q ss_pred HHHHHHhhcCcCchhHHHHHHHHHHHHHHHHHh----hCCCCCCCCCCCccCCCCCCCccchhHHHHHHhhHHHHHHHHH
Q psy4087 13 ALHYLVLISEVDEVEIFKICLEYWNALSSDLYR----ESPYMSSASGLPIMDLPNNKSHTMDEAVARRQFYAPVLTKIRY 88 (249)
Q Consensus 13 ~l~~lv~iS~i~d~EiFkicleyW~~~~~~ly~----e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~Y~~il~~lr~ 88 (249)
.+..++....-++.++-..+++||..++..... ..+.... ...|... ......+.+.++..
T Consensus 260 l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~~--------------~~~~~~~~~~~ll~ 324 (876)
T 1qgr_A 260 LFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQ-GRPPEHT--------------SKFYAKGALQYLVP 324 (876)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SSCCSSC--------------CCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhcccccc-CCCccch--------------hHHHHHHHHHHHhH
Confidence 344444444456778999999999999875321 0000000 0001000 00011234566667
Q ss_pred HHHhhcCCCceEEEeecCCCchhhhhhcchhhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHhhcCCCCCcccchhHH
Q psy4087 89 IMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLC 168 (249)
Q Consensus 89 v~I~~M~kPeEVlIve~e~Geivre~~~dtd~i~lYk~mretLvyLt~Ld~~dt~~im~ekL~~q~~~~~ws~~~lN~LC 168 (249)
.++..|.+.+| |+ |.+.-..-+..-.+|..|+....++....+...+...+... +|..-..-|
T Consensus 325 ~ll~~l~~~~~-----d~----------~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~--~~~~r~~a~ 387 (876)
T 1qgr_A 325 ILTQTLTKQDE-----ND----------DDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP--DWRYRDAAV 387 (876)
T ss_dssp HHHHHTTCCCS-----SC----------CTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCS--SHHHHHHHH
T ss_pred HHHHHhhcccc-----cc----------cccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCC--ChHHHHHHH
Confidence 77777876643 11 01111223344455666655444555556666776666543 567778899
Q ss_pred HhhhhhccCCChhhhhHhHHHHHHHHHhhhhhccCCcchHHhhhcceeeeccchHhHHh---hHHHHHHHHHHHHhhhcC
Q psy4087 169 WAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRA---HWKFLKTVVNKLFEFMHG 245 (249)
Q Consensus 169 WAIGSISGam~ee~Ek~Flv~vIk~LL~LcE~k~gk~nKAvIASnIMYvvgQYpRFLk~---~w~fLktVv~KLfEFM~e 245 (249)
|++|+|+....++.=..++..++..|+.+.. |....|-...+..+|++-..+.. +..++..++..|+..+++
T Consensus 388 ~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~-----d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~ 462 (876)
T 1qgr_A 388 MAFGCILEGPEPSQLKPLVIQAMPTLIELMK-----DPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA 462 (876)
T ss_dssp HHHHHTSSSSCHHHHHHHHHHHHHHHHHHHT-----CSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC
Confidence 9999999888744334577888888887663 22344555556677877777665 568899999999988764
No 11
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=95.40 E-value=0.077 Score=53.66 Aligned_cols=158 Identities=15% Similarity=0.199 Sum_probs=95.1
Q ss_pred HHHHHHH-HHHHhhcCCCce-EEEeecCCCchhhhhhcchhhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHhhc---
Q psy4087 81 PVLTKIR-YIMVSRMAKPEE-VLVVENENGEVVREFMKDTDSINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVN--- 155 (249)
Q Consensus 81 ~il~~lr-~v~I~~M~kPeE-VlIve~e~Geivre~~~dtd~i~lYk~mretLvyLt~Ld~~dt~~im~ekL~~q~~--- 155 (249)
+++.++- .+++..|.=+++ .-.-++|.-|-+|+...++|.-+..+..-++|.-|+.-..+.+...+.+.+...+.
T Consensus 333 ~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~ 412 (960)
T 1wa5_C 333 SAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYM 412 (960)
T ss_dssp HHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhc
Confidence 7788888 788888864433 21123333445665554555556777888888888887776666666665544332
Q ss_pred -CCCCCcccchhHHHhhhhhccC--CChh-hh--------hHhHHH-HHHHHHhhhhhccCCcchHHhhhcceeeeccch
Q psy4087 156 -GTEWSWKNLNTLCWAIGSISGA--MHEE-DE--------KRFLVT-VIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYP 222 (249)
Q Consensus 156 -~~~ws~~~lN~LCWAIGSISGa--m~ee-~E--------k~Flv~-vIk~LL~LcE~k~gk~nKAvIASnIMYvvgQYp 222 (249)
+..-+|..--.-..|+|||+.. .... .+ ..|+++ |+.+| . .. + +...++-.-.+..+|||.
T Consensus 413 ~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l-~---~~-~-~~~p~vr~~a~~~lg~~~ 486 (960)
T 1wa5_C 413 SDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDL-T---SN-N-IPHIILRVDAIKYIYTFR 486 (960)
T ss_dssp C----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHH-H---CS-S-CSCHHHHHHHHHHHHHTG
T ss_pred cCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHh-c---CC-C-CCCceehHHHHHHHHHHH
Confidence 1233577778889999999832 1211 11 134444 33333 1 11 1 225566666778999998
Q ss_pred HhHHhhHHHHHHHHHHHHhhhcCC
Q psy4087 223 RFLRAHWKFLKTVVNKLFEFMHGP 246 (249)
Q Consensus 223 RFLk~~w~fLktVv~KLfEFM~e~ 246 (249)
.++ +.+++..++.-++..++.+
T Consensus 487 ~~~--~~~~l~~~l~~l~~~L~d~ 508 (960)
T 1wa5_C 487 NQL--TKAQLIELMPILATFLQTD 508 (960)
T ss_dssp GGS--CHHHHHHHHHHHHHHTTCS
T ss_pred hhC--CHHHHHHHHHHHHHHhCCC
Confidence 876 5678999999888887654
No 12
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=94.29 E-value=0.17 Score=44.87 Aligned_cols=186 Identities=16% Similarity=0.269 Sum_probs=109.1
Q ss_pred cCchhHHHHHHHHHHHHHHHHHhhCCCCC--CCCCCCccCCCCCCCccchhHHHHHHhhHHHHHHHHHHHHhhcCCCceE
Q psy4087 23 VDEVEIFKICLEYWNALSSDLYRESPYMS--SASGLPIMDLPNNKSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKPEEV 100 (249)
Q Consensus 23 i~d~EiFkicleyW~~~~~~ly~e~~~~~--~~~~~~~~~~~~~~~~~~~~~~~r~~~Y~~il~~lr~v~I~~M~kPeEV 100 (249)
-.+.++-..+++||..++........... ...+.|... ....+..+.+..+...++..|.+.+|
T Consensus 270 ~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~p~l~~~l~~~d~- 335 (462)
T 1ibr_B 270 SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEH-------------TSKFYAKGALQYLVPILTQTLTKQDE- 335 (462)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSC-------------CCCCHHHHHHHHHHHHHHHHTTCCCS-
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccc-------------hhHHHHHHHhhhccHHHHHHHHhccc-
Confidence 35678899999999999876431100000 000001000 01112244566777777887876542
Q ss_pred EEeecCCCchhhhhhcchhhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHhhcCCCCCcccchhHHHhhhhhccCCCh
Q psy4087 101 LVVENENGEVVREFMKDTDSINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHE 180 (249)
Q Consensus 101 lIve~e~Geivre~~~dtd~i~lYk~mretLvyLt~Ld~~dt~~im~ekL~~q~~~~~ws~~~lN~LCWAIGSISGam~e 180 (249)
++++ +.-..-...-.+|-.|+..-.+.....+...+...++.. +|..--.-|+|+|+++....+
T Consensus 336 ---d~~~-----------~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~--~~~~r~aal~~l~~l~~~~~~ 399 (462)
T 1ibr_B 336 ---NDDD-----------DDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP--DWRYRDAAVMAFGCILEGPEP 399 (462)
T ss_dssp ---SCCT-----------TCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHTSSSSCT
T ss_pred ---cccc-----------ccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHhcCCcH
Confidence 1111 111223445567777776655667777777777766544 566777889999999976653
Q ss_pred hhhhHhHHHHHHHHHhhhhhccCCcchHHhhhcceeeeccchHhHHh---hHHHHHHHHHHHHhhh
Q psy4087 181 EDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRA---HWKFLKTVVNKLFEFM 243 (249)
Q Consensus 181 e~Ek~Flv~vIk~LL~LcE~k~gk~nKAvIASnIMYvvgQYpRFLk~---~w~fLktVv~KLfEFM 243 (249)
+.=+..+..++..|+.+... ....|-......+|++-..+.. +-.++..++..|+.-+
T Consensus 400 ~~~~~~l~~~~~~l~~~l~d-----~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L 460 (462)
T 1ibr_B 400 SQLKPLVIQAMPTLIELMKD-----PSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGL 460 (462)
T ss_dssp TTTCTTTTTHHHHHHHGGGC-----SCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHh
Confidence 32233455666666666542 2244556666677777776665 3578999999888654
No 13
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=59.00 E-value=7.3 Score=38.93 Aligned_cols=76 Identities=14% Similarity=0.113 Sum_probs=57.4
Q ss_pred cccchhHHHhhhhhccCCChhhhhHhHHHHHHHHHhhhhhccCCcchHHhhhcceeeeccchHhHHhhHHHHHHHHHHHH
Q psy4087 161 WKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLF 240 (249)
Q Consensus 161 ~~~lN~LCWAIGSISGam~ee~Ek~Flv~vIk~LL~LcE~k~gk~nKAvIASnIMYvvgQYpRFLk~~w~fLktVv~KLf 240 (249)
+.--.+.||++|..+..+.+.. .++..++..|+.... +.-+...|+.+..++...+.-|. .++..++++|+
T Consensus 520 ~~vr~~a~~~l~~~~~~l~~~~--~~l~~vl~~l~~~l~----~~v~~~A~~al~~l~~~~~~~l~---p~~~~ll~~l~ 590 (971)
T 2x1g_F 520 VKLLGTALETMGSYCNWLMENP--AYIPPAINLLVRGLN----SSMSAQATLGLKELCRDCQLQLK---PYADPLLNACH 590 (971)
T ss_dssp HHHHHHHHHHHHHTHHHHC------CHHHHHHHHHHHHH----SSCHHHHHHHHHHHHHHCHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHhC----hHHHHHHHHHHHHHHHHHHHhcc---ccHHHHHHHHH
Confidence 4445788999999998877543 799999999986553 66778888888888888777665 66788888888
Q ss_pred hhhcC
Q psy4087 241 EFMHG 245 (249)
Q Consensus 241 EFM~e 245 (249)
+.+..
T Consensus 591 ~~l~~ 595 (971)
T 2x1g_F 591 ASLNT 595 (971)
T ss_dssp HHHHS
T ss_pred HHHcC
Confidence 87765
No 14
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=43.60 E-value=17 Score=28.54 Aligned_cols=32 Identities=31% Similarity=0.540 Sum_probs=25.0
Q ss_pred EeecCCCchhhhhhcchhhHHHHHHHHHHHHHH
Q psy4087 102 VVENENGEVVREFMKDTDSINLYKNMRETLVYL 134 (249)
Q Consensus 102 Ive~e~Geivre~~~dtd~i~lYk~mretLvyL 134 (249)
|++.+.|+++|+ +..-+-+.+.+.|++..-.|
T Consensus 73 VvD~~TgEVIRq-IPpEe~L~l~~~l~e~~Gll 104 (117)
T 2hc5_A 73 VIEDSTNEVIRE-IPPKRWLDFYAAMTEFLGLF 104 (117)
T ss_dssp EEETTTTEEEEE-ECHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCcEEEe-CChHHHHHHHHHHHHhhcee
Confidence 468889999997 56667788899998876544
No 15
>2e9x_A DNA replication complex GINS protein PSF1; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.1 PDB: 2eho_B*
Probab=39.80 E-value=53 Score=26.16 Aligned_cols=34 Identities=21% Similarity=0.384 Sum_probs=22.2
Q ss_pred cchhHHHhhhh-----hccCCChhhhhHhHHHHHHHHHhh
Q psy4087 163 NLNTLCWAIGS-----ISGAMHEEDEKRFLVTVIKDLLGL 197 (249)
Q Consensus 163 ~lN~LCWAIGS-----ISGam~ee~Ek~Flv~vIk~LL~L 197 (249)
++-++||.+|+ +...++ ..|..|+..--+.|-..
T Consensus 86 kI~~~~w~~g~~L~~~~~~~LS-~~E~~f~~~Y~~lL~~y 124 (149)
T 2e9x_A 86 RIRALRWEYGSVLPNALRFHMA-AEEMEWFNNYKRSLATY 124 (149)
T ss_dssp HHHHHHHHHCSSCCHHHHHTSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccccCChHHHhcCC-HHHHHHHHHHHHHHHHH
Confidence 78889999987 444454 35777777655544433
No 16
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=37.77 E-value=37 Score=33.22 Aligned_cols=85 Identities=13% Similarity=0.145 Sum_probs=62.5
Q ss_pred HHHHHHHhhcCCCCCcccchhHHHhhhhhccCCChhhhhHhHHHHHHHHHhhhhhccCCcchHHhhhcceeeeccchHhH
Q psy4087 146 MTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFL 225 (249)
Q Consensus 146 m~ekL~~q~~~~~ws~~~lN~LCWAIGSISGam~ee~Ek~Flv~vIk~LL~LcE~k~gk~nKAvIASnIMYvvgQYpRFL 225 (249)
+...|-+.++.++-..+-....|.+||-++...+ +.=..++..++..+++--..++..+.|..+..++..++.|+|.-+
T Consensus 712 il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~-~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~ 790 (852)
T 4fdd_A 712 VLHQLVEIINRPNTPKTLLENTAITIGRLGYVCP-QEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGV 790 (852)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCH-HHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGT
T ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCH-HHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChHhH
Confidence 3444444455555556677889999999987744 344567888888888766666777789999999999999999976
Q ss_pred HhhHHH
Q psy4087 226 RAHWKF 231 (249)
Q Consensus 226 k~~w~f 231 (249)
-.+.-+
T Consensus 791 ~~~~~~ 796 (852)
T 4fdd_A 791 IQDFIF 796 (852)
T ss_dssp GGGHHH
T ss_pred HHHHHH
Confidence 666554
No 17
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=31.75 E-value=14 Score=36.64 Aligned_cols=77 Identities=12% Similarity=0.131 Sum_probs=54.5
Q ss_pred cccchhHHHhhhhhccCCChhhhhHhHHHHHHHHHhhhhhccCCcchHHhhhcceeeeccchHhHHhhHHHHHHHHHHHH
Q psy4087 161 WKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLF 240 (249)
Q Consensus 161 ~~~lN~LCWAIGSISGam~ee~Ek~Flv~vIk~LL~LcE~k~gk~nKAvIASnIMYvvgQYpRFLk~~w~fLktVv~KLf 240 (249)
+.--.+.||++|..+.-+... ..++..++..|+..... +.-+...|+.+..++...++-|. .++..++.+|+
T Consensus 503 ~~vr~~~~~~l~~~~~~l~~~--~~~l~~vl~~l~~~l~~---~~V~~~A~~al~~l~~~~~~~l~---p~~~~il~~l~ 574 (963)
T 2x19_B 503 VQLADTVMFTIGALSEWLADH--PVMINSVLPLVLHALGN---PELSVSSVSTLKKICRECKYDLP---PYAANIVAVSQ 574 (963)
T ss_dssp HHHHHHHHHHHHHTHHHHHHC--HHHHTTTHHHHHHHTTC---GGGHHHHHHHHHHHHHHTGGGCT---TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHhCC---chHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHH
Confidence 334478899999999776533 37899999988854422 45566667777777776665554 56788888888
Q ss_pred hhhcC
Q psy4087 241 EFMHG 245 (249)
Q Consensus 241 EFM~e 245 (249)
..+..
T Consensus 575 ~~l~~ 579 (963)
T 2x19_B 575 DVLMK 579 (963)
T ss_dssp HHHHT
T ss_pred HHhcc
Confidence 87764
No 18
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=31.60 E-value=16 Score=37.10 Aligned_cols=77 Identities=13% Similarity=0.258 Sum_probs=54.7
Q ss_pred hHHHhhhhhccCCChhhhhHhHHHHHHHHHhhhhhccCCcchHHhhhcceeeeccchHhHH----h-hHHHHHHHHHHHH
Q psy4087 166 TLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLR----A-HWKFLKTVVNKLF 240 (249)
Q Consensus 166 ~LCWAIGSISGam~ee~Ek~Flv~vIk~LL~LcE~k~gk~nKAvIASnIMYvvgQYpRFLk----~-~w~fLktVv~KLf 240 (249)
+.||++|..+.-+.. ...|+..|+..|+..... ..+.-++..|+.+..++...++-|- . --.++..++.+|+
T Consensus 519 ~~~~~lgry~~~~~~--~~~~l~~vl~~ll~~l~~-~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~ 595 (1049)
T 3m1i_C 519 DIMYVVGQYPRFLKA--HWNFLRTVILKLFEFMHE-THEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQ 595 (1049)
T ss_dssp HHHHHHHHCHHHHHH--CHHHHHHHHHHHHHHTTS-SCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHH
Confidence 599999999866554 357999999999965322 2356677777888888877655442 0 0177889999888
Q ss_pred hhhcC
Q psy4087 241 EFMHG 245 (249)
Q Consensus 241 EFM~e 245 (249)
+.+.+
T Consensus 596 ~~~~~ 600 (1049)
T 3m1i_C 596 KTTAD 600 (1049)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 87764
No 19
>3fze_A Protein STE5; alpha/beta/alpha, VWA-like fold (SCOP), cytoplasm, pheromone response, phosphoprotein, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 4f2h_A
Probab=25.60 E-value=97 Score=26.47 Aligned_cols=49 Identities=18% Similarity=0.359 Sum_probs=32.6
Q ss_pred HHHHHHHHHhhcCCCceEEEeecCCCchhhhhhc-chhhHHHHHHHHHHHHHHh
Q psy4087 83 LTKIRYIMVSRMAKPEEVLVVENENGEVVREFMK-DTDSINLYKNMRETLVYLT 135 (249)
Q Consensus 83 l~~lr~v~I~~M~kPeEVlIve~e~Geivre~~~-dtd~i~lYk~mretLvyLt 135 (249)
|..+..++=-|+.||++++||-- +=-..++ +.+.+.+|++.|....-..
T Consensus 3 mTtISSILSLKRerPd~L~ivlQ----iD~~Kl~~~~~~~~i~NslkAL~~Kf~ 52 (196)
T 3fze_A 3 LTTISSILSLKREKPDNLAIILQ----IDFTKLKEEDSLIVVYNSLKALTIKFA 52 (196)
T ss_dssp HHHHHHHHHHHHTCCSEEEEEEE----ECGGGCCSTHHHHHHHHHHHHHHHHCT
T ss_pred cceehhhhhhhccCCCcEEEEEE----ecHHHhccCCcEEeehHHHHHHHhccC
Confidence 34455566678999999988631 1122345 7788899998887765443
No 20
>2o3l_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.05A {Bacillus cereus} SCOP: a.69.4.1
Probab=24.21 E-value=25 Score=26.18 Aligned_cols=46 Identities=20% Similarity=0.499 Sum_probs=32.9
Q ss_pred cccchhHHHhhhhhccCCChhhhhHhHHHHHHHHHhhhhhc--cCCcchHHhhhcc
Q psy4087 161 WKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQK--KGKDNKAIIASNI 214 (249)
Q Consensus 161 ~~~lN~LCWAIGSISGam~ee~Ek~Flv~vIk~LL~LcE~k--~gk~nKAvIASnI 214 (249)
+..+++--|..|+.+|. + +..++.+||+|.|.. .|+..+.|+.++.
T Consensus 21 y~~i~~Yl~~~~~~~g~----~----~~~il~~lldlfEeaaa~G~~v~eV~G~D~ 68 (85)
T 2o3l_A 21 FKKIQNYMWNFSAGNGM----D----MLHIQYELIDLFEAGAAEGRQVLDITGEDV 68 (85)
T ss_dssp HHHHHHHHHHHCCSCHH----H----HHHHHHHHHHHHHHHHHHTCCHHHHHCSCH
T ss_pred HHHHHHHHHHhCCCchh----H----HHHHHHHHHHHHHHHHHcCCchHHHhCcCH
Confidence 34566667866554432 2 778899999999876 7888888887764
No 21
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=22.01 E-value=3e+02 Score=26.14 Aligned_cols=48 Identities=15% Similarity=0.157 Sum_probs=34.2
Q ss_pred hcCCCCCcccchhHHHhhhhhccCCChhhhhHhHHHHHHHHHhhhhhcc
Q psy4087 154 VNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKK 202 (249)
Q Consensus 154 ~~~~~ws~~~lN~LCWAIGSISGam~ee~Ek~Flv~vIk~LL~LcE~k~ 202 (249)
++.++-+...-...+|++|.|+.++.++.. .|+..++.-|+.....+.
T Consensus 700 l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~-~~l~~~~~~l~~~~~~~~ 747 (876)
T 1qgr_A 700 LGNENVHRSVKPQILSVFGDIALAIGGEFK-KYLEVVLNTLQQASQAQV 747 (876)
T ss_dssp HTCTTSCGGGHHHHHHHHHHHHHHHGGGGG-GGHHHHHHHHHHHHTCCC
T ss_pred hCCccccHHhhHHHHHHHHHHHHHhchhHH-HHHHHHHHHHHHHHhccC
Confidence 333344566778899999999988876643 378888888877665443
No 22
>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E
Probab=21.82 E-value=91 Score=29.69 Aligned_cols=38 Identities=21% Similarity=0.362 Sum_probs=28.8
Q ss_pred HHHHHhhHHHHHHHHHH-----------HHhhcCCCceEEEe----ecCCCch
Q psy4087 73 VARRQFYAPVLTKIRYI-----------MVSRMAKPEEVLVV----ENENGEV 110 (249)
Q Consensus 73 ~~r~~~Y~~il~~lr~v-----------~I~~M~kPeEVlIv----e~e~Gei 110 (249)
+...+-+.+++..|..+ +++++..||.++.+ .||+|++
T Consensus 25 ~ef~qa~~e~~~~l~~~~~~~p~y~~~~~~e~l~~PeR~i~~~vp~~~D~G~~ 77 (450)
T 4fcc_A 25 TEFAQAVREVMTTLWPFLEQNPKYRQMSLLERLVEPERVIQFRVVWVDDRNQV 77 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGTSTTHHHHHTSCSEEEEEEEEEECTTSCE
T ss_pred hHHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHhCCceEEEEEEEEEECCCcE
Confidence 34555667777777766 68999999999863 7999965
No 23
>2o4t_A BH3976 protein; LEFT-handed superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 1.95A {Bacillus halodurans} SCOP: a.69.4.1
Probab=21.62 E-value=34 Score=26.25 Aligned_cols=46 Identities=15% Similarity=0.426 Sum_probs=33.0
Q ss_pred ccchhHHHhhhhhccCCChhhhhHhHHHHHHHHHhhhhhc--cCCcchHHhhhcce
Q psy4087 162 KNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQK--KGKDNKAIIASNIM 215 (249)
Q Consensus 162 ~~lN~LCWAIGSISGam~ee~Ek~Flv~vIk~LL~LcE~k--~gk~nKAvIASnIM 215 (249)
..+++--|..|+.+|. + +..++.+||+|.|.. .|+....|+.+++-
T Consensus 19 ~~i~~Yl~~~~~~~g~----~----~~~il~~lldlfEeaaa~Gk~v~eV~G~D~~ 66 (100)
T 2o4t_A 19 KEIQKYLFKVGPVELN----E----GIGLLSEILGFFEEGAAAGKGVLDVTGTDVA 66 (100)
T ss_dssp HHHHHHHHHHSCCSHH----H----HHHHHHHHHHHHHHHHHTTCCHHHHHCSCHH
T ss_pred HHHHHHHHHhCCCchh----H----HHHHHHHHHHHHHHHHHcCCchHHHhCCCHH
Confidence 4556667866554432 1 778899999999876 78888888877654
No 24
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=21.57 E-value=93 Score=26.97 Aligned_cols=99 Identities=13% Similarity=0.184 Sum_probs=48.7
Q ss_pred cCChhhHHHHHHHHHHHhhcCCCCCcccchhHHHhhhhhccCCChhhhhHhHHHHHHHHHhhhhhcc-CCcchHHhhhcc
Q psy4087 136 HLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKK-GKDNKAIIASNI 214 (249)
Q Consensus 136 ~Ld~~dt~~im~ekL~~q~~~~~ws~~~lN~LCWAIGSISGam~ee~Ek~Flv~vIk~LL~LcE~k~-gk~nKAvIASnI 214 (249)
.++.++-..+-...+....+. +... +++|.+||.|+....++.+ ...++..|+..+.... +...+......+
T Consensus 82 ~l~~~~~~~ik~~ll~~l~~~---~~~v-~~~~~~i~~ia~~~~~~~~---w~~ll~~L~~~l~~~~~~~~~r~~al~~l 154 (462)
T 1ibr_B 82 AIDANARREVKNYVLQTLGTE---TYRP-SSASQCVAGIACAEIPVNQ---WPELIPQLVANVTNPNSTEHMKESTLEAI 154 (462)
T ss_dssp TSCHHHHHHHHHHHHHHTTCC---CSSS-CSHHHHHHHHHHHHGGGTC---CTTHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCC---Cchh-hHHHHHHHHHHHHhccccc---cHHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 455544444433333332222 2344 8999999999876533211 1334455555544321 223344444445
Q ss_pred eeeeccc-hHhHHhhHHHHHHHHHHHHhhhc
Q psy4087 215 MYVVGQY-PRFLRAHWKFLKTVVNKLFEFMH 244 (249)
Q Consensus 215 MYvvgQY-pRFLk~~w~fLktVv~KLfEFM~ 244 (249)
-+++..+ |.++..| +..++..+...+.
T Consensus 155 ~~l~~~~~~~~~~~~---~~~ll~~l~~~l~ 182 (462)
T 1ibr_B 155 GYICQDIDPEQLQDK---SNEILTAIIQGMR 182 (462)
T ss_dssp HHHHHHSCGGGTGGG---HHHHHHHHHHHHS
T ss_pred HHHHHhCCchhhHhH---HHHHHHHHHHHhC
Confidence 5566555 5555444 3345555555544
Done!