RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4087
(249 letters)
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding,
acetylation, GTP-binding, HOST-virus interaction,
nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus
musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Length = 1073
Score = 237 bits (605), Expect = 4e-72
Identities = 185/243 (76%), Positives = 204/243 (83%), Gaps = 7/243 (2%)
Query: 5 ESDEWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNN 64
E ALHY++L+SEV+E EIFKICLEYWN L+++LYRESP+ +SAS L +
Sbjct: 344 NLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFD 403
Query: 65 KSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLY 124
RRQ Y VL+K+R +MVSRMAKPEEVLVVEN+ GEVVREFMKDTDSINLY
Sbjct: 404 IPP-------RRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLY 456
Query: 125 KNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEK 184
KNMRETLVYLTHL+Y DTE +MT+KLQ QVNGTEWSWKNLNTLCWAIGSISGAMHEEDEK
Sbjct: 457 KNMRETLVYLTHLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEK 516
Query: 185 RFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH 244
RFLVTVIKDLLGLCEQK+GKDNKAIIASNIMY+VGQYPRFLRAHWKFLKTVVNKLFEFMH
Sbjct: 517 RFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMH 576
Query: 245 GPS 247
Sbjct: 577 ETH 579
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL
protein transport, transport, cytoplasm, GTPase
activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
PDB: 2l1l_B
Length = 1049
Score = 196 bits (498), Expect = 1e-57
Identities = 122/234 (52%), Positives = 166/234 (70%), Gaps = 26/234 (11%)
Query: 14 LHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSHTMDEAV 73
YL+ +S+++E E+FK L+YW+ L +DL+ E
Sbjct: 346 HQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPL------------------------- 380
Query: 74 ARRQFYAPVLTKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNMRETLVY 133
++ Y + +++R +++ M +PEEVLVVEN+ GE+VREF+K++D+I LYK+ RE LVY
Sbjct: 381 -KKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVY 439
Query: 134 LTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKD 193
LTHLN DTE++M KL +Q++G+EWSW N+NTL WAIGSISG M E+ EKRF+VTVIKD
Sbjct: 440 LTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKD 499
Query: 194 LLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHGPS 247
LL L +K+GKDNKA++AS+IMYVVGQYPRFL+AHW FL+TV+ KLFEFMH
Sbjct: 500 LLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETH 553
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A
{Homo sapiens} PDB: 2xwu_B
Length = 963
Score = 126 bits (316), Expect = 4e-33
Identities = 38/256 (14%), Positives = 91/256 (35%), Gaps = 46/256 (17%)
Query: 1 MSALESDEWFTTALHYLVLISEVD-----EVEIFKICLEYWNALSSDLYRESPYMSSASG 55
+ +E + F ++ ++ + + + L +W L D+ +
Sbjct: 324 LDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAV-- 381
Query: 56 LPIMDLPNNKSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKP--EEVLVVENENGEVVRE 113
+Q Y PV ++ +++ + P EE ++ E R
Sbjct: 382 -------------------YQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRI 422
Query: 114 FMKDTDSINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTE--WSWKNLNTLCWAI 171
+ D + +TL+Y+ + + + KL + + +E +SW++ L +
Sbjct: 423 YRVD---------ISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGF 473
Query: 172 GSISGAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKF 231
SI+ + V+ L+GL + + +A +M+ +G +L H
Sbjct: 474 QSIAETIDVNYS-----DVVPGLIGLIPRIS--ISNVQLADTVMFTIGALSEWLADHPVM 526
Query: 232 LKTVVNKLFEFMHGPS 247
+ +V+ + + P
Sbjct: 527 INSVLPLVLHALGNPE 542
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing,
nuclear transport, mRNA splicing, mRNA transport; 3.35A
{Drosophila melanogaster}
Length = 971
Score = 117 bits (292), Expect = 5e-30
Identities = 26/227 (11%), Positives = 75/227 (33%), Gaps = 35/227 (15%)
Query: 21 SEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSHTMDEAVARRQFYA 80
E + L +W L +++ S ++
Sbjct: 362 IYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHK--------------------CWEYIK 401
Query: 81 PVLTKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNMRETLVYLTHLNYT 140
P+ + I+V + +P+E + + + ++ +++ +T +Y +
Sbjct: 402 PLYAHLTRILVRKSEQPDEKSLAKWSSDDLE-------CFRCYRQDISDTFMYCYDVLND 454
Query: 141 DTEQVMTQKLQQ---QVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGL 197
+++ L + + W L ++ S++ E EKR + +++ L +
Sbjct: 455 YILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGE-EKRQIPRLMRVLAEI 513
Query: 198 CEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH 244
+ + + +G Y +L + ++ +N L ++
Sbjct: 514 PYE----KLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGLN 556
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA-
binding, transport, tRNA processing, tRNA-binding, RNA
binding protein; 3.10A {Schizosaccharomyces pombe} PDB:
3icq_T*
Length = 980
Score = 114 bits (285), Expect = 4e-29
Identities = 28/250 (11%), Positives = 68/250 (27%), Gaps = 41/250 (16%)
Query: 10 FTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSHTM 69
YL+ D E + + L L +ES
Sbjct: 330 LYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKEL----------------- 372
Query: 70 DEAVARRQFYAPVLTKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNMRE 129
L + ++ +M E ++ + E EF + K ++
Sbjct: 373 ------SASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQ------EMRKKLKI 420
Query: 130 TLVYLTHLNYTDTEQVMTQKLQQQV-----NGTEWSWKNLNTLCWAIG----SISGAMHE 180
+ ++ + M + + E SW+ + + + G
Sbjct: 421 FQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAF 480
Query: 181 EDEKRFLVTVIKDLLG-LCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKL 239
+E TV+ +L + + + ++ M ++ +Y F + ++
Sbjct: 481 FNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYF 540
Query: 240 F--EFMHGPS 247
+H +
Sbjct: 541 VGPRGIHNTN 550
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family,
nucleus, phosphoprotein, protein transport; HET: GTP;
2.92A {Homo sapiens}
Length = 1204
Score = 98.6 bits (244), Expect = 1e-23
Identities = 37/252 (14%), Positives = 73/252 (28%), Gaps = 13/252 (5%)
Query: 2 SALESDEWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDL 61
S +E+ F L + + + W AL + A +
Sbjct: 341 SDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRA 400
Query: 62 PNNKSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSI 121
+ + + +P R+ S + GEV+R +
Sbjct: 401 SMTN---LVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKT 457
Query: 122 NLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAI------GSIS 175
+ L+ + D V + G+ S + + + W I+
Sbjct: 458 SFQMAGEWLKYQLST--FLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVIT 515
Query: 176 GAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTV 235
+ + V +LL + KD +I S ++ V F+ +FL V
Sbjct: 516 QMFRTLNREEIPVNDGIELLQMVLNFDTKDP--LILSCVLTNVSALFPFVTYRPEFLPQV 573
Query: 236 VNKLFEFMHGPS 247
+KLF + +
Sbjct: 574 FSKLFSSVTFET 585
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.5 bits (104), Expect = 2e-05
Identities = 45/263 (17%), Positives = 86/263 (32%), Gaps = 46/263 (17%)
Query: 25 EVEIFKICLEYWNALSSDLYRE----SPYMSSASGLPIMDLPN---NKSHTMDEAVAR-- 75
E+ + L+Y + DL RE +P S I D N H + +
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359
Query: 76 RQFYA---PVLTKIRYIMVSRMAK----PEEVLVV------ENENGEVVREFMKDTDSIN 122
P + + +S P +L + +++ VV + K +
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL--- 416
Query: 123 LYKNMRETLVYLTHLNYTDT------EQVMTQKLQQQVNGTE-WSWKNL------NTLCW 169
+ K +E+ + + Y + E + + + N + + +L
Sbjct: 417 VEKQPKESTISI-PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475
Query: 170 AIGS-ISGAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIAS----NIMYVVGQYPRF 224
IG + H E F V D EQK D+ A AS N + + Y +
Sbjct: 476 HIGHHLKNIEHPERMTLF-RMVFLDF-RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533
Query: 225 LRAHWKFLKTVVNKLFEFMHGPS 247
+ + + +VN + +F+
Sbjct: 534 ICDNDPKYERLVNAILDFLPKIE 556
Score = 27.5 bits (60), Expect = 5.0
Identities = 15/101 (14%), Positives = 39/101 (38%), Gaps = 29/101 (28%)
Query: 58 IMDLPNN--KSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKPEEVLVVENENGEVVREFM 115
+ D+P + +D + + ++ + + ++K EE+ V++F+
Sbjct: 38 VQDMPKSILSKEEIDHIIMSK----DAVSGTLRLFWTLLSKQEEM----------VQKFV 83
Query: 116 KDTDSIN---LYKNMRE--------TLVYLTHLN--YTDTE 143
++ IN L ++ T +Y+ + Y D +
Sbjct: 84 EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 2e-04
Identities = 38/221 (17%), Positives = 71/221 (32%), Gaps = 80/221 (36%)
Query: 42 DLYRESP-----------YMSSASGLPIMDL-PNN-KSHTMDEAVARRQFYAPVLTKIR- 87
DLY+ S + G I+D+ NN + T+ F +IR
Sbjct: 1634 DLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTI-------HFGGEKGKRIRE 1686
Query: 88 -YIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNMRETLVYLTHLNYTDTEQV- 145
Y + + L E ++ +E + + S +++ + L T +T Q
Sbjct: 1687 NYSAMIFETIVDGKLKTE----KIFKEINEHSTSY-TFRSEKGLL-SATQ--FT---QPA 1735
Query: 146 -------MTQKLQQQVN------------GTEWSWKNLNTLCWAIGSISGAMHEEDEKRF 186
+ L+ + G E++ A+ S++ M E
Sbjct: 1736 LTLMEKAAFEDLKSKGLIPADATFAGHSLG-EYA---------ALASLADVMSIES---- 1781
Query: 187 LVTVIKDLL---GLCEQK------KGKDNKAIIASNIMYVV 218
V +++ G+ Q G+ N +IA N V
Sbjct: 1782 --LV--EVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVA 1818
Score = 27.7 bits (61), Expect = 4.1
Identities = 27/174 (15%), Positives = 46/174 (26%), Gaps = 75/174 (43%)
Query: 47 SPYMSSASGLPIMDLPNNKSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKPEEVLVVENE 106
S + AS L DL N + + + PV Y +
Sbjct: 429 SHLLVPASDLINKDLVKN-----NVSFNAKDIQIPV-----Y---------------DTF 463
Query: 107 NGEVVREFMKDTDSINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLN- 165
+G +R + SI+ E +V + ++ V W+
Sbjct: 464 DGSDLRVL---SGSIS------ERIV----------DCIIR----LPVK-----WETTTQ 495
Query: 166 -TLCWAI----GSISGAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNI 214
+ G SG L KD G+ + I+A +
Sbjct: 496 FKATHILDFGPGGASGLGV-------LTHRNKDGTGV---------RVIVAGTL 533
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic
transport, nuclear trafficking, importin- beta, complex;
1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB:
2bku_B 3ea5_B* 3nd2_A
Length = 861
Score = 33.2 bits (75), Expect = 0.078
Identities = 20/177 (11%), Positives = 50/177 (28%), Gaps = 11/177 (6%)
Query: 70 DEAVARRQFYAPVLTKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNMRE 129
+E + A ++ ++V+ + + D N+ +
Sbjct: 295 EEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNL-LTRQNEDPEDDDWNVSMSAGA 353
Query: 130 TLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVT 189
L + + + ++Q + W +N A GSI + ++
Sbjct: 354 CLQLFAQNCGNHILEPVLEFVEQNITADNW--RNREAAVMAFGSIMDGPDKVQRTYYVHQ 411
Query: 190 VIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLR---AHWKFLKTVVNKLFEFM 243
+ +L L D + + +G+ + + L VV +
Sbjct: 412 ALPSILNLM-----NDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGL 463
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein
complex I, protein TRAN; 2.90A {Saccharomyces
cerevisiae} PDB: 3mv3_A
Length = 325
Score = 29.3 bits (65), Expect = 1.1
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 5 ESDEWFTTALHYLVLI-----SEVDEV-EIFKICLEYWNALSSDLYRES 47
+ E F A++ + L+ + +I + EY LS +L R S
Sbjct: 132 IAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRS 180
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 320
Score = 29.2 bits (65), Expect = 1.3
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 5 ESDEWFTTALHYLVLI-----SEVDEV-EIFKICLEYWNALSSDLYRES 47
E+ E F + L + L+ E+ E ++ IC EY LS + R+
Sbjct: 120 EAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKK 168
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 28.4 bits (64), Expect = 2.0
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 7/30 (23%)
Query: 90 MVSRMAKPEEV--LV---VENE--NGEVVR 112
R+ P+E + N NGEV+R
Sbjct: 242 FPKRLGTPDEFADAAAFLLTNGYINGEVMR 271
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase,
protein-targeting, transport protein; HET: GDP; 1.97A
{Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Length = 328
Score = 28.4 bits (64), Expect = 2.2
Identities = 9/40 (22%), Positives = 13/40 (32%), Gaps = 16/40 (40%)
Query: 64 NKSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKPEEVLVV 103
+ MDE + KI + KP V+ V
Sbjct: 225 TNRNLMDE-----------MKKIARVT-----KPNLVIFV 248
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear
import, heat motif, NLS-binding; 2.30A {Homo sapiens}
SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A
2qna_A
Length = 876
Score = 28.3 bits (62), Expect = 2.7
Identities = 36/255 (14%), Positives = 81/255 (31%), Gaps = 30/255 (11%)
Query: 14 LHYLVLISEVDEVEIFKICLEYWNALSSDLYRE-SPYMSSASGLPIMDLPNNKSHTMDEA 72
+ + ++ + + L+ + S Y+ YM A L + + KS + A
Sbjct: 219 MQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPA--LFAITIEAMKSDIDEVA 276
Query: 73 VARRQFYAPVLTKIRYIMVSRMAKPE-----------------EVLVVENENGEVVREFM 115
+ +F++ V + + + E + LV ++
Sbjct: 277 LQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDEN 336
Query: 116 KDTDSINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSIS 175
D D N K L+ L D + +++ + +W + + A G I
Sbjct: 337 DDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDW--RYRDAAVMAFGCIL 394
Query: 176 GAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLR---AHWKFL 232
K ++ + L+ L + D ++ + VG+ L + +L
Sbjct: 395 EGPEPSQLKPLVIQAMPTLIELMK-----DPSVVVRDTAAWTVGRICELLPEAAINDVYL 449
Query: 233 KTVVNKLFEFMHGPS 247
++ L E +
Sbjct: 450 APLLQCLIEGLSAEP 464
>1vkc_A Putative acetyl transferase; structural genomics, pyrococcus
furiosus southeast collaboratory for structural
genomics, secsg; 1.89A {Pyrococcus furiosus} SCOP:
d.108.1.1
Length = 158
Score = 26.2 bits (58), Expect = 7.7
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 73 VARRQFYAPVLTKIRYIMVSRMAKPE-EVLVVENENGEVV 111
V Y + + S +++ E + V NE E++
Sbjct: 35 VRFPISYEEYEERHEELFESLLSQGEHKFFVALNERSELL 74
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.133 0.395
Gapped
Lambda K H
0.267 0.0741 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,807,411
Number of extensions: 216038
Number of successful extensions: 480
Number of sequences better than 10.0: 1
Number of HSP's gapped: 469
Number of HSP's successfully gapped: 28
Length of query: 249
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 158
Effective length of database: 4,160,982
Effective search space: 657435156
Effective search space used: 657435156
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.3 bits)