RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4087
         (249 letters)



>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 458

 Score = 27.8 bits (60), Expect = 1.5
 Identities = 26/166 (15%), Positives = 52/166 (31%), Gaps = 11/166 (6%)

Query: 80  APVLTKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSI-NLYKNMRETLVYLTHLN 138
           A    +         AK     +V      + ++   D D   N  K     L+ L    
Sbjct: 299 AAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC 358

Query: 139 YTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLC 198
             D    +   +++ +   +W  +  +    A G I         K  ++  +  L+ L 
Sbjct: 359 EDDIVPHVLPFIKEHIKNPDW--RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELM 416

Query: 199 EQKKGKDNKAIIASNIMYVVGQYPRFLR---AHWKFLKTVVNKLFE 241
                KD   ++     + VG+    L     +  +L  ++  L E
Sbjct: 417 -----KDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIE 457


>d2i5ha1 e.71.1.1 (A:16-195) Hypothetical protein AF1531
           {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 180

 Score = 26.3 bits (58), Expect = 3.2
 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 82  VLTKIRYIMVSRMAKPEEVLVVEN---ENGEVVREFMKDTDSINLYKNMRETL 131
           +  ++RY  ++  AK E   V+E+   ++ +   +F    DSI    +  E L
Sbjct: 68  IKRRLRYEDLTPAAKTELPYVIEHIIKQDEKKYVDFFNKADSITTRMHQLELL 120


>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 888

 Score = 25.8 bits (55), Expect = 5.8
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 10/72 (13%)

Query: 165 NTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCE----QKKGKDNKAIIASNIMYVVGQ 220
           N   WAIG IS  M  E +  ++  V+  L+ +       K   +N AI    + YV  Q
Sbjct: 724 NNATWAIGEISIQMGIEMQP-YIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQ 782

Query: 221 Y-----PRFLRA 227
                  +F+R 
Sbjct: 783 EVAPMLQQFIRP 794


>d2hc5a1 d.352.1.1 (A:1-109) Hypothetical protein YvyC {Bacillus
           subtilis [TaxId: 1423]}
          Length = 109

 Score = 24.4 bits (53), Expect = 7.1
 Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)

Query: 100 VLVVENENGEVVREFMKDTDSINLYKNMRE 129
           V V+E+   EV+RE       ++ Y  M E
Sbjct: 71  VKVIEDSTNEVIREIPPK-RWLDFYAAMTE 99


>d1kl7a_ c.79.1.1 (A:) Threonine synthase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 511

 Score = 25.4 bits (55), Expect = 8.7
 Identities = 5/51 (9%), Positives = 22/51 (43%)

Query: 68  TMDEAVARRQFYAPVLTKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDT 118
            ++ A++    Y+     +   +       +++  +E  + E+V+  +++ 
Sbjct: 457 AVNNALSGFSNYSFEKDVLPEELKKLSTLKKKLKFIERADVELVKNAIEEE 507


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.133    0.395 

Gapped
Lambda     K      H
   0.267   0.0656    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 931,708
Number of extensions: 40697
Number of successful extensions: 88
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 7
Length of query: 249
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 166
Effective length of database: 1,268,006
Effective search space: 210488996
Effective search space used: 210488996
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.0 bits)