BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4089
(223 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GJX|A Chain A, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|D Chain D, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3NBY|A Chain A, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export
Complex
pdb|3NBY|D Chain D, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export
Complex
pdb|3NBZ|A Chain A, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|D Chain D, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|A Chain A, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|D Chain D, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC1|A Chain A, Crystal Structure Of The Crm1-Rangtp Complex
Length = 1073
Score = 315 bits (806), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 153/223 (68%), Positives = 180/223 (80%), Gaps = 2/223 (0%)
Query: 1 MINKDFEEYPEHRTNFFLLLQAVNLHCFPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADT 60
MINKDFEEYPEHRTNFFLLLQAVN HCFPAFL IP QFKLVLDSIIWAFKHTMRNVADT
Sbjct: 835 MINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADT 894
Query: 61 GLMILHQLLVNVCHDAQSAAQSFYVTYFTEILTHVFSVVTDTSHSASLAHHAQILSYMFK 120
GL IL LL NV + ++AAQSFY TYF +IL H+FSVVTDTSH+A L HA IL+YMF
Sbjct: 895 GLQILFTLLQNVAQE-EAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFN 953
Query: 121 LVETREVAAPLAPG-VTDNVVYVQEFVARTLKSAFPHLTENQIKVTVQGMFDFNNDLPAF 179
LVE +++ PL PG +N +++Q++VA LKSAFPHL + Q+K+ V G+F N D+PAF
Sbjct: 954 LVEEGKISTPLNPGNPVNNQMFIQDYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPAF 1013
Query: 180 KEHLRDFLVQIREFTGEDDSDLFLDEIEQTLKQAQEKKRQTQL 222
KEHLRDFLVQI+EF GED SDLFL+E E L+QAQE+K + Q+
Sbjct: 1014 KEHLRDFLVQIKEFAGEDTSDLFLEERETALRQAQEEKHKLQM 1056
>pdb|3GB8|A Chain A, Crystal Structure Of Crm1SNURPORTIN-1 Complex
Length = 1071
Score = 309 bits (792), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 152/223 (68%), Positives = 178/223 (79%), Gaps = 2/223 (0%)
Query: 1 MINKDFEEYPEHRTNFFLLLQAVNLHCFPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADT 60
MINKDFEEYPEHRTNFFLLLQAVN HCFPAFL IP QFKLVLDSIIWAFKHTMRNVADT
Sbjct: 833 MINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADT 892
Query: 61 GLMILHQLLVNVCHDAQSAAQSFYVTYFTEILTHVFSVVTDTSHSASLAHHAQILSYMFK 120
GL IL LL NV + ++AAQSFY TYF +IL H+FSVVTDTSH+A L HA IL+YMF
Sbjct: 893 GLQILFTLLQNVAQE-EAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFN 951
Query: 121 LVETREVAAPLAPG-VTDNVVYVQEFVARTLKSAFPHLTENQIKVTVQGMFDFNNDLPAF 179
LVE +++ L PG +N +++QE+VA LKSAFPHL + Q+K+ V G+F N D+PAF
Sbjct: 952 LVEEGKISTSLNPGNPVNNQIFLQEYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPAF 1011
Query: 180 KEHLRDFLVQIREFTGEDDSDLFLDEIEQTLKQAQEKKRQTQL 222
KEHLRDFLVQI+EF GED SDLFL+E E L+QA E+K + Q+
Sbjct: 1012 KEHLRDFLVQIKEFAGEDTSDLFLEEREIALRQADEEKHKRQM 1054
>pdb|1W9C|A Chain A, Proteolytic Fragment Of Crm1 Spanning Six C-Terminal Heat
Repeats
pdb|1W9C|B Chain B, Proteolytic Fragment Of Crm1 Spanning Six C-Terminal Heat
Repeats
Length = 321
Score = 281 bits (718), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 137/196 (69%), Positives = 158/196 (80%), Gaps = 2/196 (1%)
Query: 1 MINKDFEEYPEHRTNFFLLLQAVNLHCFPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADT 60
MINKDFEEYPEHRTNFFLLLQAVN HCFPAFL IP QFKLVLDSIIWAFKHTMRNVADT
Sbjct: 127 MINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADT 186
Query: 61 GLMILHQLLVNVCHDAQSAAQSFYVTYFTEILTHVFSVVTDTSHSASLAHHAQILSYMFK 120
GL IL LL NV + ++AAQSFY TYF +IL H+FSVVTDTSH+A L HA IL+YMF
Sbjct: 187 GLQILFTLLQNVAQE-EAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFN 245
Query: 121 LVETREVAAPLAPG-VTDNVVYVQEFVARTLKSAFPHLTENQIKVTVQGMFDFNNDLPAF 179
LVE +++ L PG +N +++QE+VA LKSAFPHL + Q+K+ V G+F N D+PAF
Sbjct: 246 LVEEGKISTSLNPGNPVNNQIFLQEYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPAF 305
Query: 180 KEHLRDFLVQIREFTG 195
KEHLRDFLVQI+EF G
Sbjct: 306 KEHLRDFLVQIKEFAG 321
>pdb|4FGV|A Chain A, Crystal Structure Of Free Crm1 (crystal Form 1)
pdb|4HZK|A Chain A, Crystal Structure Of Free Crm1 (crystal Form 2)
pdb|4HZK|B Chain B, Crystal Structure Of Free Crm1 (crystal Form 2)
Length = 1086
Score = 155 bits (393), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 91/227 (40%), Positives = 129/227 (56%), Gaps = 16/227 (7%)
Query: 1 MINKDFEEYPEHRTNFFLLLQAVNLHCFPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADT 60
MINKDF EYPEHR FF LL+A+NL+CFPA L + QFK V+DS +WA KH R+V
Sbjct: 839 MINKDFAEYPEHRVEFFNLLRAINLYCFPALLKLDNRQFKFVIDSCMWASKHDNRDVETA 898
Query: 61 GLMILHQLLVNVCH--DAQSAAQSFYVTYFTEILTHVFSVVTDTSHSASLAHHAQILSYM 118
GL + +L+ N+ D Q+ +F+ +F IL VF V+TDT H A + +L +
Sbjct: 899 GLNMCLELINNIAEKTDVQT-CNAFFNQFFIRILQDVFFVLTDTDHKAGFKTQSMLLMRL 957
Query: 119 FKLVETREVAAP-----------LAPGVTDNVVYVQEFVARTLKSAFPHLTENQIKVTVQ 167
F V + +AP PG T N ++ FV L++AF +LT QI V+
Sbjct: 958 FYFVHPADGSAPKIQGPIYQPDQAQPG-TGNREFLANFVGTLLQNAFANLTPLQITTFVK 1016
Query: 168 GMFDFNNDLPAFKEHLRDFLVQIREFTGEDDSDLFLDEIEQTLKQAQ 214
F+ N F+ LRDFL+ +REF G D+++L+ E EQ ++A+
Sbjct: 1017 DCFELNTQYDKFRVVLRDFLISLREFAG-DNAELYQVEKEQQEREAR 1062
>pdb|3M1I|C Chain C, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas
(Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 1049
Score = 153 bits (387), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 87/225 (38%), Positives = 122/225 (54%), Gaps = 6/225 (2%)
Query: 1 MINKDFEEYPEHRTNFFLLLQAVNLHCFPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADT 60
MINKDF EYPEHR F+ LL+ +N F AFL +P FKL +D+I WAFKH R+V
Sbjct: 809 MINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVN 868
Query: 61 GLMILHQLLVNVCHDAQSA-AQSFYVTYFTEILTHVFSVVTDTSHSASLAHHAQILSYMF 119
GL I L+ N+ A F+ YF ++ F V+TD+ H + + A +L +
Sbjct: 869 GLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQALLLMKLI 928
Query: 120 KLVETREVAAPL-----APGVTDNVVYVQEFVARTLKSAFPHLTENQIKVTVQGMFDFNN 174
LV +++ PL P T N VY+ +++A L +AFPHLT QI + +
Sbjct: 929 SLVYDNKISVPLYQEAEVPQGTSNQVYLSQYLANMLSNAFPHLTSEQIASFLSALTKQYK 988
Query: 175 DLPAFKEHLRDFLVQIREFTGEDDSDLFLDEIEQTLKQAQEKKRQ 219
DL FK LRDFLVQI+E G+ LF ++ E L + +R+
Sbjct: 989 DLVVFKGTLRDFLVQIKEVGGDPTDYLFAEDKENALMEQNRLERE 1033
>pdb|4GPT|C Chain C, Crystal Structure Of Kpt251 In Complex With Crm1-ran-ranbp1
pdb|4GMX|C Chain C, Crystal Structure Of Kpt185 In Complex With Crm1-Ran-Ranbp1
Length = 1060
Score = 150 bits (380), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 117/213 (54%), Gaps = 6/213 (2%)
Query: 1 MINKDFEEYPEHRTNFFLLLQAVNLHCFPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADT 60
MINKDF EYPEHR F+ LL+ +N F AFL +P FKL +D+I WAFKH R+V
Sbjct: 846 MINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVN 905
Query: 61 GLMILHQLLVNVCHDAQSA-AQSFYVTYFTEILTHVFSVVTDTSHSASLAHHAQILSYMF 119
GL I L+ N+ A F+ YF ++ F V+TD+ H + + A +L +
Sbjct: 906 GLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQALLLMKLI 965
Query: 120 KLVETREVAAPL-----APGVTDNVVYVQEFVARTLKSAFPHLTENQIKVTVQGMFDFNN 174
LV +++ PL P T N VY+ +++A L +AFPHLT QI + +
Sbjct: 966 SLVYDNKISVPLYQEAEVPQGTSNQVYLSQYLANMLSNAFPHLTSEQIASFLSALTKQCK 1025
Query: 175 DLPAFKEHLRDFLVQIREFTGEDDSDLFLDEIE 207
DL FK LRDFLVQI+E G+ LF ++ E
Sbjct: 1026 DLVVFKGTLRDFLVQIKEVGGDPTDYLFAEDKE 1058
>pdb|4HB4|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex
With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 1023
Score = 150 bits (380), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 117/213 (54%), Gaps = 6/213 (2%)
Query: 1 MINKDFEEYPEHRTNFFLLLQAVNLHCFPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADT 60
MINKDF EYPEHR F+ LL+ +N F AFL +P FKL +D+I WAFKH R+V
Sbjct: 809 MINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVN 868
Query: 61 GLMILHQLLVNVCHDAQSA-AQSFYVTYFTEILTHVFSVVTDTSHSASLAHHAQILSYMF 119
GL I L+ N+ A F+ YF ++ F V+TD+ H + + A +L +
Sbjct: 869 GLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQALLLMKLI 928
Query: 120 KLVETREVAAPL-----APGVTDNVVYVQEFVARTLKSAFPHLTENQIKVTVQGMFDFNN 174
LV +++ PL P T N VY+ +++A L +AFPHLT QI + +
Sbjct: 929 SLVYDNKISVPLYQEAEVPQGTSNQVYLSQYLANMLSNAFPHLTSEQIASFLSALTKQCK 988
Query: 175 DLPAFKEHLRDFLVQIREFTGEDDSDLFLDEIE 207
DL FK LRDFLVQI+E G+ LF ++ E
Sbjct: 989 DLVVFKGTLRDFLVQIKEVGGDPTDYLFAEDKE 1021
>pdb|4HAZ|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex
With Crm1(r543s,k548e,k579q)-ran-ranbp1
Length = 1023
Score = 150 bits (379), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 117/213 (54%), Gaps = 6/213 (2%)
Query: 1 MINKDFEEYPEHRTNFFLLLQAVNLHCFPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADT 60
MINKDF EYPEHR F+ LL+ +N F AFL +P FKL +D+I WAFKH R+V
Sbjct: 809 MINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVN 868
Query: 61 GLMILHQLLVNVCHDAQSA-AQSFYVTYFTEILTHVFSVVTDTSHSASLAHHAQILSYMF 119
GL I L+ N+ A F+ YF ++ F V+TD+ H + + A +L +
Sbjct: 869 GLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQALLLMKLI 928
Query: 120 KLVETREVAAPL-----APGVTDNVVYVQEFVARTLKSAFPHLTENQIKVTVQGMFDFNN 174
LV +++ PL P T N VY+ +++A L +AFPHLT QI + +
Sbjct: 929 SLVYDNKISVPLYQEAEVPQGTSNQVYLSQYLANMLSNAFPHLTSEQIASFLSALTKQCK 988
Query: 175 DLPAFKEHLRDFLVQIREFTGEDDSDLFLDEIE 207
DL FK LRDFLVQI+E G+ LF ++ E
Sbjct: 989 DLVVFKGTLRDFLVQIKEVGGDPTDYLFAEDKE 1021
>pdb|4HAY|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex
With Crm1(k548e,k579q)-ran-ranbp1
Length = 1023
Score = 150 bits (379), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 117/213 (54%), Gaps = 6/213 (2%)
Query: 1 MINKDFEEYPEHRTNFFLLLQAVNLHCFPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADT 60
MINKDF EYPEHR F+ LL+ +N F AFL +P FKL +D+I WAFKH R+V
Sbjct: 809 MINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVN 868
Query: 61 GLMILHQLLVNVCHDAQSA-AQSFYVTYFTEILTHVFSVVTDTSHSASLAHHAQILSYMF 119
GL I L+ N+ A F+ YF ++ F V+TD+ H + + A +L +
Sbjct: 869 GLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQALLLMKLI 928
Query: 120 KLVETREVAAPL-----APGVTDNVVYVQEFVARTLKSAFPHLTENQIKVTVQGMFDFNN 174
LV +++ PL P T N VY+ +++A L +AFPHLT QI + +
Sbjct: 929 SLVYDNKISVPLYQEAEVPQGTSNQVYLSQYLANMLSNAFPHLTSEQIASFLSALTKQCK 988
Query: 175 DLPAFKEHLRDFLVQIREFTGEDDSDLFLDEIE 207
DL FK LRDFLVQI+E G+ LF ++ E
Sbjct: 989 DLVVFKGTLRDFLVQIKEVGGDPTDYLFAEDKE 1021
>pdb|4HB0|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex
With Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
Length = 1023
Score = 150 bits (379), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 117/213 (54%), Gaps = 6/213 (2%)
Query: 1 MINKDFEEYPEHRTNFFLLLQAVNLHCFPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADT 60
MINKDF EYPEHR F+ LL+ +N F AFL +P FKL +D+I WAFKH R+V
Sbjct: 809 MINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVN 868
Query: 61 GLMILHQLLVNVCHDAQSA-AQSFYVTYFTEILTHVFSVVTDTSHSASLAHHAQILSYMF 119
GL I L+ N+ A F+ YF ++ F V+TD+ H + + A +L +
Sbjct: 869 GLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQALLLMKLI 928
Query: 120 KLVETREVAAPL-----APGVTDNVVYVQEFVARTLKSAFPHLTENQIKVTVQGMFDFNN 174
LV +++ PL P T N VY+ +++A L +AFPHLT QI + +
Sbjct: 929 SLVYDNKISVPLYQEAEVPQGTSNQVYLSQYLANMLSNAFPHLTSEQIASFLSALTKQCK 988
Query: 175 DLPAFKEHLRDFLVQIREFTGEDDSDLFLDEIE 207
DL FK LRDFLVQI+E G+ LF ++ E
Sbjct: 989 DLVVFKGTLRDFLVQIKEVGGDPTDYLFAEDKE 1021
>pdb|4HB3|C Chain C, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In Excess
Crm1 Inhibitor Leptomycin B
Length = 1023
Score = 150 bits (379), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 117/213 (54%), Gaps = 6/213 (2%)
Query: 1 MINKDFEEYPEHRTNFFLLLQAVNLHCFPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADT 60
MINKDF EYPEHR F+ LL+ +N F AFL +P FKL +D+I WAFKH R+V
Sbjct: 809 MINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVN 868
Query: 61 GLMILHQLLVNVCHDAQSA-AQSFYVTYFTEILTHVFSVVTDTSHSASLAHHAQILSYMF 119
GL I L+ N+ A F+ YF ++ F V+TD+ H + + A +L +
Sbjct: 869 GLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQALLLMKLI 928
Query: 120 KLVETREVAAPL-----APGVTDNVVYVQEFVARTLKSAFPHLTENQIKVTVQGMFDFNN 174
LV +++ PL P T N VY+ +++A L +AFPHLT QI + +
Sbjct: 929 SLVYDNKISVPLYQEAEVPQGTSNQVYLSQYLANMLSNAFPHLTSEQIASFLSALTKQCK 988
Query: 175 DLPAFKEHLRDFLVQIREFTGEDDSDLFLDEIE 207
DL FK LRDFLVQI+E G+ LF ++ E
Sbjct: 989 DLVVFKGTLRDFLVQIKEVGGDPTDYLFAEDKE 1021
>pdb|4HB2|C Chain C, Crystal Structure Of Crm1-ran-ranbp1
Length = 1023
Score = 150 bits (379), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 117/213 (54%), Gaps = 6/213 (2%)
Query: 1 MINKDFEEYPEHRTNFFLLLQAVNLHCFPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADT 60
MINKDF EYPEHR F+ LL+ +N F AFL +P FKL +D+I WAFKH R+V
Sbjct: 809 MINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVN 868
Query: 61 GLMILHQLLVNVCHDAQSA-AQSFYVTYFTEILTHVFSVVTDTSHSASLAHHAQILSYMF 119
GL I L+ N+ A F+ YF ++ F V+TD+ H + + A +L +
Sbjct: 869 GLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQALLLMKLI 928
Query: 120 KLVETREVAAPL-----APGVTDNVVYVQEFVARTLKSAFPHLTENQIKVTVQGMFDFNN 174
LV +++ PL P T N VY+ +++A L +AFPHLT QI + +
Sbjct: 929 SLVYDNKISVPLYQEAEVPQGTSNQVYLSQYLANMLSNAFPHLTSEQIASFLSALTKQCK 988
Query: 175 DLPAFKEHLRDFLVQIREFTGEDDSDLFLDEIE 207
DL FK LRDFLVQI+E G+ LF ++ E
Sbjct: 989 DLVVFKGTLRDFLVQIKEVGGDPTDYLFAEDKE 1021
>pdb|4HAT|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex
With Crm1- Ran-ranbp1
pdb|4HAU|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|C Chain C, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
Length = 1023
Score = 150 bits (379), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 117/213 (54%), Gaps = 6/213 (2%)
Query: 1 MINKDFEEYPEHRTNFFLLLQAVNLHCFPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADT 60
MINKDF EYPEHR F+ LL+ +N F AFL +P FKL +D+I WAFKH R+V
Sbjct: 809 MINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVN 868
Query: 61 GLMILHQLLVNVCHDAQSA-AQSFYVTYFTEILTHVFSVVTDTSHSASLAHHAQILSYMF 119
GL I L+ N+ A F+ YF ++ F V+TD+ H + + A +L +
Sbjct: 869 GLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQALLLMKLI 928
Query: 120 KLVETREVAAPL-----APGVTDNVVYVQEFVARTLKSAFPHLTENQIKVTVQGMFDFNN 174
LV +++ PL P T N VY+ +++A L +AFPHLT QI + +
Sbjct: 929 SLVYDNKISVPLYQEAEVPQGTSNQVYLSQYLANMLSNAFPHLTSEQIASFLSALTKQCK 988
Query: 175 DLPAFKEHLRDFLVQIREFTGEDDSDLFLDEIE 207
DL FK LRDFLVQI+E G+ LF ++ E
Sbjct: 989 DLVVFKGTLRDFLVQIKEVGGDPTDYLFAEDKE 1021
>pdb|4HAX|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
Length = 1023
Score = 150 bits (379), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 117/213 (54%), Gaps = 6/213 (2%)
Query: 1 MINKDFEEYPEHRTNFFLLLQAVNLHCFPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADT 60
MINKDF EYPEHR F+ LL+ +N F AFL +P FKL +D+I WAFKH R+V
Sbjct: 809 MINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVN 868
Query: 61 GLMILHQLLVNVCHDAQSA-AQSFYVTYFTEILTHVFSVVTDTSHSASLAHHAQILSYMF 119
GL I L+ N+ A F+ YF ++ F V+TD+ H + + A +L +
Sbjct: 869 GLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQALLLMKLI 928
Query: 120 KLVETREVAAPL-----APGVTDNVVYVQEFVARTLKSAFPHLTENQIKVTVQGMFDFNN 174
LV +++ PL P T N VY+ +++A L +AFPHLT QI + +
Sbjct: 929 SLVYDNKISVPLYQEAEVPQGTSNQVYLSQYLANMLSNAFPHLTSEQIASFLSALTKQCK 988
Query: 175 DLPAFKEHLRDFLVQIREFTGEDDSDLFLDEIE 207
DL FK LRDFLVQI+E G+ LF ++ E
Sbjct: 989 DLVVFKGTLRDFLVQIKEVGGDPTDYLFAEDKE 1021
>pdb|4HAW|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex
With Crm1(k548a)-ran-ranbp1
Length = 1023
Score = 150 bits (379), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 117/213 (54%), Gaps = 6/213 (2%)
Query: 1 MINKDFEEYPEHRTNFFLLLQAVNLHCFPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADT 60
MINKDF EYPEHR F+ LL+ +N F AFL +P FKL +D+I WAFKH R+V
Sbjct: 809 MINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVN 868
Query: 61 GLMILHQLLVNVCHDAQSA-AQSFYVTYFTEILTHVFSVVTDTSHSASLAHHAQILSYMF 119
GL I L+ N+ A F+ YF ++ F V+TD+ H + + A +L +
Sbjct: 869 GLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQALLLMKLI 928
Query: 120 KLVETREVAAPL-----APGVTDNVVYVQEFVARTLKSAFPHLTENQIKVTVQGMFDFNN 174
LV +++ PL P T N VY+ +++A L +AFPHLT QI + +
Sbjct: 929 SLVYDNKISVPLYQEAEVPQGTSNQVYLSQYLANMLSNAFPHLTSEQIASFLSALTKQCK 988
Query: 175 DLPAFKEHLRDFLVQIREFTGEDDSDLFLDEIE 207
DL FK LRDFLVQI+E G+ LF ++ E
Sbjct: 989 DLVVFKGTLRDFLVQIKEVGGDPTDYLFAEDKE 1021
>pdb|3VYC|A Chain A, Crystal Structure Of Unliganded Saccharomyces Cerevisiae
Crm1 (Xpo1p)
Length = 1033
Score = 144 bits (362), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 84/220 (38%), Positives = 117/220 (53%), Gaps = 10/220 (4%)
Query: 1 MINKDFEEYPEHRTNFFLLLQAVNLHCFPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADT 60
MINKDF EYPEHR F+ LL+ +N F AFL +P FKL +D+I WAFKH R+V
Sbjct: 807 MINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVN 866
Query: 61 GLMILHQLLVNVCHDAQSA-AQSFYVTYFTEILTHVFSVVTDTSHSASLAHHAQILSYMF 119
GL I L+ N+ A F+ YF ++ F V+TD+ H + + A +L +
Sbjct: 867 GLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQALLLMKLI 926
Query: 120 KLVETREVAAPLAPGVTDNVVYVQEFVARTLKSAFPHLTENQIKVTVQGMFDFNNDLPAF 179
LV + T N VY+ +++A L +AFPHLT QI + + DL F
Sbjct: 927 SLVYDNK---------TSNQVYLSQYLANMLSNAFPHLTSEQIASFLSALTKQYKDLVVF 977
Query: 180 KEHLRDFLVQIREFTGEDDSDLFLDEIEQTLKQAQEKKRQ 219
K LRDFLVQI+E G+ LF ++ E L + +R+
Sbjct: 978 KGTLRDFLVQIKEVGGDPTDYLFAEDKENALMEQNRLERE 1017
>pdb|2ISS|A Chain A, Structure Of The Plp Synthase Holoenzyme From Thermotoga
Maritima
pdb|2ISS|B Chain B, Structure Of The Plp Synthase Holoenzyme From Thermotoga
Maritima
pdb|2ISS|C Chain C, Structure Of The Plp Synthase Holoenzyme From Thermotoga
Maritima
Length = 313
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 147 ARTLKSAFPHLTENQIKVTVQGMFDFNNDLPAFKEHLRDFLVQIREFTGEDDSDL--FLD 204
AR L A + E + +G N + A K H+R + QI++ T +D +L +
Sbjct: 150 ARDLGEALRRIAEGAAMIRTKGEAGTGNVVEAVK-HMRRVMEQIKQVTKMEDEELVAYGK 208
Query: 205 EIEQTLKQAQEKKRQTQL 222
EI ++ +E KR +L
Sbjct: 209 EIGAPVELLREVKRLGRL 226
>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006
pdb|1UWJ|B Chain B, The Complex Of Mutant V599e B-raf And Bay439006
Length = 276
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 96 FSVVTDTSHSASLAHHAQILSYMFKLVETREVAAPLAPGVTDNVVYVQEFVARTLKS 152
++VT +SL HH I+ F++++ ++A A G+ + ++ + + R LKS
Sbjct: 78 LAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGM--DYLHAKSIIHRDLKS 132
>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
pdb|4G9R|B Chain B, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
Length = 307
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 96 FSVVTDTSHSASLAHHAQILSYMFKLVETREVAAPLAPGVTDNVVYVQEFVARTLKS 152
++VT +SL HH I+ F++++ ++A A G+ + ++ + + R LKS
Sbjct: 106 LAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGM--DYLHAKSIIHRDLKS 160
>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
pdb|3II5|B Chain B, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
Length = 306
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 96 FSVVTDTSHSASLAHHAQILSYMFKLVETREVAAPLAPGVTDNVVYVQEFVARTLKS 152
++VT +SL HH I+ F++++ ++A A G+ + ++ + + R LKS
Sbjct: 105 LAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGM--DYLHAKSIIHRDLKS 159
>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
pdb|3IDP|B Chain B, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
Length = 300
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 96 FSVVTDTSHSASLAHHAQILSYMFKLVETREVAAPLAPGVTDNVVYVQEFVARTLKS 152
++VT +SL HH I+ F++++ ++A A G+ + ++ + + R LKS
Sbjct: 98 LAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGM--DYLHAKSIIHRDLKS 152
>pdb|4H58|A Chain A, Braf In Complex With Compound 3
pdb|4H58|B Chain B, Braf In Complex With Compound 3
pdb|4H58|C Chain C, Braf In Complex With Compound 3
Length = 275
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 96 FSVVTDTSHSASLAHHAQILSYMFKLVETREVAAPLAPGVTDNVVYVQEFVARTLKS 152
++VT +SL HH I+ F++++ ++A A G+ + ++ + + R LKS
Sbjct: 78 LAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGM--DYLHAKSIIHRDLKS 132
>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3D4Q|B Chain B, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3PSB|A Chain A, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PSB|B Chain B, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PPJ|A Chain A, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPJ|B Chain B, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPK|A Chain A, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PPK|B Chain B, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PRF|A Chain A, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRF|B Chain B, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRI|A Chain A, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3PRI|B Chain B, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3Q4C|A Chain A, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3Q4C|B Chain B, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3PSD|A Chain A, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3PSD|B Chain B, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3SKC|A Chain A, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3SKC|B Chain B, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3TV4|A Chain A, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV4|B Chain B, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV6|A Chain A, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|3TV6|B Chain B, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|4E26|A Chain A, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E26|B Chain B, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E4X|A Chain A, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4E4X|B Chain B, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4G9C|A Chain A, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
pdb|4G9C|B Chain B, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
Length = 307
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 96 FSVVTDTSHSASLAHHAQILSYMFKLVETREVAAPLAPGVTDNVVYVQEFVARTLKS 152
++VT +SL HH I+ F++++ ++A A G+ + ++ + + R LKS
Sbjct: 106 LAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGM--DYLHAKSIIHRDLKS 160
>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
pdb|4DBN|B Chain B, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 284
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 96 FSVVTDTSHSASLAHHAQILSYMFKLVETREVAAPLAPGVTDNVVYVQEFVARTLKS 152
++VT +SL HH I+ F++++ ++A A G+ + ++ + + R LKS
Sbjct: 83 LAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGM--DYLHAKSIIHRDLKS 137
>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
pdb|2FB8|B Chain B, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
Length = 281
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 96 FSVVTDTSHSASLAHHAQILSYMFKLVETREVAAPLAPGVTDNVVYVQEFVARTLKS 152
++VT +SL HH I+ F++++ ++A A G+ + ++ + + R LKS
Sbjct: 83 LAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGM--DYLHAKSIIHRDLKS 137
>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006
pdb|1UWH|B Chain B, The Complex Of Wild Type B-Raf And Bay439006
Length = 276
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 96 FSVVTDTSHSASLAHHAQILSYMFKLVETREVAAPLAPGVTDNVVYVQEFVARTLKS 152
++VT +SL HH I+ F++++ ++A A G+ + ++ + + R LKS
Sbjct: 78 LAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGM--DYLHAKSIIHRDLKS 132
>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
pdb|3Q96|B Chain B, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
Length = 282
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 96 FSVVTDTSHSASLAHHAQILSYMFKLVETREVAAPLAPGVTDNVVYVQEFVARTLKS 152
++VT +SL HH I+ F++++ ++A A G+ + ++ + + R LKS
Sbjct: 80 LAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGM--DYLHAKSIIHRDLKS 134
>pdb|1XMD|A Chain A, M335v Mutant Structure Of Mouse Carnitine
Octanoyltransferase
pdb|1XMD|B Chain B, M335v Mutant Structure Of Mouse Carnitine
Octanoyltransferase
Length = 612
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 159 ENQIKVTVQ-GMFDFNNDLP-----AFKEHLRDFLVQIREFTGEDDSDLFLDEIEQTLKQ 212
ENQ+ +V+ F + + LP A +E L+ +L ++ F ED+ +EI Q ++
Sbjct: 2 ENQLTKSVEERTFQYQDSLPSLPVPALEESLKKYLESVKPFANEDEYKK-TEEIVQKFQE 60
Query: 213 AQEKKRQTQL 222
K+ +L
Sbjct: 61 GAGKRLHQKL 70
>pdb|1XMC|A Chain A, C323m Mutant Structure Of Mouse Carnitine
Octanoyltransferase
pdb|1XMC|B Chain B, C323m Mutant Structure Of Mouse Carnitine
Octanoyltransferase
Length = 612
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 159 ENQIKVTVQ-GMFDFNNDLP-----AFKEHLRDFLVQIREFTGEDDSDLFLDEIEQTLKQ 212
ENQ+ +V+ F + + LP A +E L+ +L ++ F ED+ +EI Q ++
Sbjct: 2 ENQLTKSVEERTFQYQDSLPSLPVPALEESLKKYLESVKPFANEDEYKK-TEEIVQKFQE 60
Query: 213 AQEKKRQTQL 222
K+ +L
Sbjct: 61 GAGKRLHQKL 70
>pdb|1XL7|A Chain A, Crystal Structure Of Mouse Carnitine Octanoyltransferase
pdb|1XL7|B Chain B, Crystal Structure Of Mouse Carnitine Octanoyltransferase
pdb|1XL8|A Chain A, Crystal Structure Of Mouse Carnitine Octanoyltransferase
In Complex With Octanoylcarnitine
pdb|1XL8|B Chain B, Crystal Structure Of Mouse Carnitine Octanoyltransferase
In Complex With Octanoylcarnitine
Length = 612
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 159 ENQIKVTVQ-GMFDFNNDLP-----AFKEHLRDFLVQIREFTGEDDSDLFLDEIEQTLKQ 212
ENQ+ +V+ F + + LP A +E L+ +L ++ F ED+ +EI Q ++
Sbjct: 2 ENQLTKSVEERTFQYQDSLPSLPVPALEESLKKYLESVKPFANEDEYKK-TEEIVQKFQE 60
Query: 213 AQEKKRQTQL 222
K+ +L
Sbjct: 61 GAGKRLHQKL 70
>pdb|3GFM|A Chain A, Crystal Structure Of The St1710 Mutant (K91a) Protein
Length = 146
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 10/57 (17%)
Query: 162 IKVTVQGMFDFNNDLPAFKEHLRDFLVQIREFTG---EDDSDLFLDEIEQTLKQAQE 215
I++T +G+ FN + +K+ E TG ED+ L LD+I + LK+ +E
Sbjct: 94 IEITEKGLETFNKGIEIYKKL-------ANEVTGDLSEDEVILVLDKISKILKRIEE 143
>pdb|2GXG|A Chain A, Crystal Structure Of Emrr Homolog From Hyperthermophilic
Archaea Sulfolobus Tokodaii Strain7
pdb|2YR2|A Chain A, Crystal Structure Of The Hypothetical Regulator From
Sulfolobus Tokodaii
pdb|2YR2|B Chain B, Crystal Structure Of The Hypothetical Regulator From
Sulfolobus Tokodaii
pdb|2EB7|A Chain A, Crystal Structure Of The Hypothetical Regulator From
Sulfolobus Tokodaii 7
pdb|3GEZ|A Chain A, Crystal Structure Of The Hypothetical Egulator From
Sulfolobus Tokodaii 7
pdb|3GF2|A Chain A, Crystal Structure Of The Hypothetical Regulator St1710
Complexed With Sodium Salicylate
pdb|3GFI|A Chain A, Crystal Structure Of St1710 Complexed With Its Promoter
Dna
pdb|3GFI|C Chain C, Crystal Structure Of St1710 Complexed With Its Promoter
Dna
Length = 146
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 10/57 (17%)
Query: 162 IKVTVQGMFDFNNDLPAFKEHLRDFLVQIREFTG---EDDSDLFLDEIEQTLKQAQE 215
I++T +G+ FN + +K+ E TG ED+ L LD+I + LK+ +E
Sbjct: 94 IEITEKGLETFNKGIEIYKKL-------ANEVTGDLSEDEVILVLDKISKILKRIEE 143
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,095,387
Number of Sequences: 62578
Number of extensions: 223798
Number of successful extensions: 831
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 772
Number of HSP's gapped (non-prelim): 38
length of query: 223
length of database: 14,973,337
effective HSP length: 95
effective length of query: 128
effective length of database: 9,028,427
effective search space: 1155638656
effective search space used: 1155638656
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)