BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4089
(223 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6P5F9|XPO1_MOUSE Exportin-1 OS=Mus musculus GN=Xpo1 PE=1 SV=1
Length = 1071
Score = 314 bits (805), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 153/223 (68%), Positives = 180/223 (80%), Gaps = 2/223 (0%)
Query: 1 MINKDFEEYPEHRTNFFLLLQAVNLHCFPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADT 60
MINKDFEEYPEHRTNFFLLLQAVN HCFPAFL IP QFKLVLDSIIWAFKHTMRNVADT
Sbjct: 833 MINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADT 892
Query: 61 GLMILHQLLVNVCHDAQSAAQSFYVTYFTEILTHVFSVVTDTSHSASLAHHAQILSYMFK 120
GL IL LL NV + ++AAQSFY TYF +IL H+FSVVTDTSH+A L HA IL+YMF
Sbjct: 893 GLQILFTLLQNVAQE-EAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFN 951
Query: 121 LVETREVAAPLAPG-VTDNVVYVQEFVARTLKSAFPHLTENQIKVTVQGMFDFNNDLPAF 179
LVE +++ PL PG +N +++Q++VA LKSAFPHL + Q+K+ V G+F N D+PAF
Sbjct: 952 LVEEGKISTPLNPGNPVNNQMFIQDYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPAF 1011
Query: 180 KEHLRDFLVQIREFTGEDDSDLFLDEIEQTLKQAQEKKRQTQL 222
KEHLRDFLVQI+EF GED SDLFL+E E L+QAQE+K + Q+
Sbjct: 1012 KEHLRDFLVQIKEFAGEDTSDLFLEERETALRQAQEEKHKLQM 1054
>sp|Q80U96|XPO1_RAT Exportin-1 OS=Rattus norvegicus GN=Xpo1 PE=2 SV=1
Length = 1071
Score = 314 bits (804), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 153/223 (68%), Positives = 179/223 (80%), Gaps = 2/223 (0%)
Query: 1 MINKDFEEYPEHRTNFFLLLQAVNLHCFPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADT 60
MINKDFEEYPEHRTNFFLLLQAVN HCFPAFL IP QFKLVLDSIIWAFKHTMRNVADT
Sbjct: 833 MINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADT 892
Query: 61 GLMILHQLLVNVCHDAQSAAQSFYVTYFTEILTHVFSVVTDTSHSASLAHHAQILSYMFK 120
GL IL LL NV + ++AAQSFY TYF +IL H+FSVVTDTSH+A L HA IL+YMF
Sbjct: 893 GLQILFTLLQNVAQE-EAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFN 951
Query: 121 LVETREVAAPLAPGV-TDNVVYVQEFVARTLKSAFPHLTENQIKVTVQGMFDFNNDLPAF 179
LVE +++ PL PG N +++Q++VA LKSAFPHL + Q+K+ V G+F N D+PAF
Sbjct: 952 LVEEGKISTPLNPGSPVSNQMFIQDYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPAF 1011
Query: 180 KEHLRDFLVQIREFTGEDDSDLFLDEIEQTLKQAQEKKRQTQL 222
KEHLRDFLVQI+EF GED SDLFL+E E L+QAQE+K + Q+
Sbjct: 1012 KEHLRDFLVQIKEFAGEDTSDLFLEERETALRQAQEEKHKLQM 1054
>sp|O14980|XPO1_HUMAN Exportin-1 OS=Homo sapiens GN=XPO1 PE=1 SV=1
Length = 1071
Score = 309 bits (792), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 152/223 (68%), Positives = 178/223 (79%), Gaps = 2/223 (0%)
Query: 1 MINKDFEEYPEHRTNFFLLLQAVNLHCFPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADT 60
MINKDFEEYPEHRTNFFLLLQAVN HCFPAFL IP QFKLVLDSIIWAFKHTMRNVADT
Sbjct: 833 MINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADT 892
Query: 61 GLMILHQLLVNVCHDAQSAAQSFYVTYFTEILTHVFSVVTDTSHSASLAHHAQILSYMFK 120
GL IL LL NV + ++AAQSFY TYF +IL H+FSVVTDTSH+A L HA IL+YMF
Sbjct: 893 GLQILFTLLQNVAQE-EAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFN 951
Query: 121 LVETREVAAPLAPG-VTDNVVYVQEFVARTLKSAFPHLTENQIKVTVQGMFDFNNDLPAF 179
LVE +++ L PG +N +++QE+VA LKSAFPHL + Q+K+ V G+F N D+PAF
Sbjct: 952 LVEEGKISTSLNPGNPVNNQIFLQEYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPAF 1011
Query: 180 KEHLRDFLVQIREFTGEDDSDLFLDEIEQTLKQAQEKKRQTQL 222
KEHLRDFLVQI+EF GED SDLFL+E E L+QA E+K + Q+
Sbjct: 1012 KEHLRDFLVQIKEFAGEDTSDLFLEEREIALRQADEEKHKRQM 1054
>sp|Q9TVM2|XPO1_DROME Exportin-1 OS=Drosophila melanogaster GN=emb PE=1 SV=1
Length = 1063
Score = 269 bits (687), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 135/221 (61%), Positives = 171/221 (77%), Gaps = 2/221 (0%)
Query: 1 MINKDFEEYPEHRTNFFLLLQAVNLHCFPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADT 60
MINK+FE++P+HR +F+ LLQAVN HCF AFL IP QFKLV DS++WAFKHTMRNVAD
Sbjct: 826 MINKNFEDFPQHRLSFYELLQAVNAHCFKAFLNIPPAQFKLVFDSVVWAFKHTMRNVADM 885
Query: 61 GLMILHQLLVNVCHDAQSAAQSFYVTYFTEILTHVFSVVTDTSHSASLAHHAQILSYMFK 120
GL IL ++L N+ AAQSFY TYFT+IL +FSVVTDTSH+A L +HA IL+YMF
Sbjct: 886 GLNILFKMLQNL-DQHPGAAQSFYQTYFTDILMQIFSVVTDTSHTAGLPNHAIILAYMFS 944
Query: 121 LVETREVAAPLAPGVTDNVVYVQEFVARTLKSAFPHLTENQIKVTVQGMFDFNNDLPAFK 180
LVE R++ L P + DN++++QE+VA LKSAF HL++NQ+KV V G+F+ + ++ AFK
Sbjct: 945 LVENRKITVNLGP-IPDNMIFIQEYVASLLKSAFTHLSDNQVKVFVTGLFNLDENVQAFK 1003
Query: 181 EHLRDFLVQIREFTGEDDSDLFLDEIEQTLKQAQEKKRQTQ 221
EHLRDFL+QIRE TGEDDSDL+L+E E L + Q K Q Q
Sbjct: 1004 EHLRDFLIQIREATGEDDSDLYLEEREAALAEEQSNKHQMQ 1044
>sp|P14068|XPO1_SCHPO Exportin-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=xpo1 PE=1 SV=3
Length = 1078
Score = 191 bits (484), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 96/223 (43%), Positives = 146/223 (65%), Gaps = 7/223 (3%)
Query: 1 MINKDFEEYPEHRTNFFLLLQAVNLHCFPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADT 60
MI+KDF EYPEHR FF LL+A+NL+CFPA L IP PQFKLV++SI+W+FKH R++ +T
Sbjct: 834 MISKDFSEYPEHRAAFFQLLRAINLNCFPALLNIPAPQFKLVINSIVWSFKHVSRDIQET 893
Query: 61 GLMILHQLLVNVCHDAQSAAQSFYVTYFTEILTHVFSVVTDTSHSASLAHHAQILSYMFK 120
GL IL +L+ N+ + +F+ TY+ +L + V+TD+ H + + IL+ +F
Sbjct: 894 GLNILLELINNMASMGPDVSNAFFQTYYISLLQDILYVLTDSDHKSGFKLQSLILARLFY 953
Query: 121 LVETREVAAPLA-----PGVTDNVVYVQEFVARTLKSAFPHLTENQIKVTVQGMFDFNND 175
LVE+ ++ PL P +N +++++++ L +AFPHL QI+ VQ + N D
Sbjct: 954 LVESNQITVPLYDPSQFPQEMNNQLFLRQYIMNLLVTAFPHLQPIQIQEFVQTVLALNQD 1013
Query: 176 LPAFKEHLRDFLVQIREFTGEDDSDLFLDEIEQTLKQAQEKKR 218
FK LRDFL+Q++EF G D+++L+L+E EQ L AQ+K +
Sbjct: 1014 SIKFKLALRDFLIQLKEFGG-DNAELYLEEKEQELA-AQQKAQ 1054
>sp|P30822|XPO1_YEAST Exportin-1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=CRM1 PE=1 SV=1
Length = 1084
Score = 153 bits (387), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 87/225 (38%), Positives = 122/225 (54%), Gaps = 6/225 (2%)
Query: 1 MINKDFEEYPEHRTNFFLLLQAVNLHCFPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADT 60
MINKDF EYPEHR F+ LL+ +N F AFL +P FKL +D+I WAFKH R+V
Sbjct: 844 MINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVN 903
Query: 61 GLMILHQLLVNVCHDAQSA-AQSFYVTYFTEILTHVFSVVTDTSHSASLAHHAQILSYMF 119
GL I L+ N+ A F+ YF ++ F V+TD+ H + + A +L +
Sbjct: 904 GLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQALLLMKLI 963
Query: 120 KLVETREVAAPL-----APGVTDNVVYVQEFVARTLKSAFPHLTENQIKVTVQGMFDFNN 174
LV +++ PL P T N VY+ +++A L +AFPHLT QI + +
Sbjct: 964 SLVYDNKISVPLYQEAEVPQGTSNQVYLSQYLANMLSNAFPHLTSEQIASFLSALTKQYK 1023
Query: 175 DLPAFKEHLRDFLVQIREFTGEDDSDLFLDEIEQTLKQAQEKKRQ 219
DL FK LRDFLVQI+E G+ LF ++ E L + +R+
Sbjct: 1024 DLVVFKGTLRDFLVQIKEVGGDPTDYLFAEDKENALMEQNRLERE 1068
>sp|Q54EV7|XPO1_DICDI Exportin-1 OS=Dictyostelium discoideum GN=xpo1 PE=3 SV=2
Length = 1057
Score = 149 bits (376), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 135/230 (58%), Gaps = 15/230 (6%)
Query: 1 MINKDFEEYPEHRTNFFLLLQAVNLHCFPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADT 60
MI K+FE+YP HR NFF L++A+N + F F + QFKL++D ++WAFKHT RN+++T
Sbjct: 819 MITKNFEDYPYHRINFFNLIRAINSNAFTVFHNLHPQQFKLLIDCVVWAFKHTERNISET 878
Query: 61 GLMILHQLLVNVCHDAQSAAQSFYVTYFTEILTHVFSVVTDTSHSASLAHHAQILSYMFK 120
GL IL +L+ NV ++ A F+ TY +L + ++TD+ H + A IL MF+
Sbjct: 879 GLHILKELIENVSKNS-DVANVFFKTYLVSLLNDILYILTDSFHKSGFALECDILRMMFQ 937
Query: 121 LVETREVAAPL----APGVTDNVVYVQEFVARTLKSAFPHLTENQIKVTVQGMFDF---- 172
+VE V PL N YV+E V T SA P+++ QI+ V +F+
Sbjct: 938 VVENGVVKIPLFDPQQANFPSNSEYVKEIVV-TFLSASPNVSRPQIQAFVTRLFNLANIN 996
Query: 173 NNDLPAFKEHLRDFLVQIREFTGEDDSDLFLDEIEQTLKQAQEKKRQTQL 222
NND FK RDFL+ ++E+ +++DL+ D E+ +++A K+Q+ +
Sbjct: 997 NND---FKSATRDFLITLKEWKSHENADLYSD--EKNIEKALALKKQSMI 1041
>sp|C0ZAG9|HEM1_BREBN Glutamyl-tRNA reductase OS=Brevibacillus brevis (strain 47 / JCM
6285 / NBRC 100599) GN=hemA PE=3 SV=1
Length = 454
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 14/100 (14%)
Query: 129 APLAPGVTDNVVYVQEFVARTLKSAFPHLTENQ---IKVTVQGMFDFNNDLPAFKEHLRD 185
APL + D +Q R +++ P+L+E + I+ T +G+ + + L D
Sbjct: 342 APLIAALRDKANTIQSEAMRKIENKLPNLSEREMHIIRKTTKGIVN---------QLLHD 392
Query: 186 FLVQIREFTGEDDSDLFLDEIEQ--TLKQAQEKKRQTQLY 223
+V+++E D + LD E+ L++ E+K Q ++
Sbjct: 393 PVVRLKEMAATKDGEEVLDIFEKMFALEEILERKEQEAIW 432
>sp|B8G945|BCHB_CHLAD Light-independent protochlorophyllide reductase subunit B
OS=Chloroflexus aggregans (strain MD-66 / DSM 9485)
GN=bchB PE=3 SV=1
Length = 544
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 134 GVTDNVVYVQEF--VARTLKSAFPHL-TENQIKVTVQGMFDFNNDLPAFKEHLRDFLVQI 190
G D V+ EF VA + + P L Q++ +D N + + H+ + L+
Sbjct: 339 GYVDEVLVTDEFQTVAARIAALRPELVCGTQMERHTSRRYDLNCMVISPPTHIENHLLAY 398
Query: 191 REFTGEDDSDLFLDEIEQTLKQAQEK 216
R F G D +D+ DE+ T EK
Sbjct: 399 RPFLGFDGADVIADEVYTTCTLGMEK 424
>sp|B9LKM4|BCHB_CHLSY Light-independent protochlorophyllide reductase subunit B
OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637
/ Y-400-fl) GN=bchB PE=3 SV=1
Length = 541
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 134 GVTDNVVYVQEF--VARTLKSAFPHLT-ENQIKVTVQGMFDFNNDLPAFKEHLRDFLVQI 190
G D V+ EF VA + + P L Q++ +D N + + H+ + L+
Sbjct: 339 GYVDEVLVTDEFQVVADRIAALRPELVCGTQMERHTSRRYDLNCMVISPPTHIENHLLAY 398
Query: 191 REFTGEDDSDLFLDEIEQTLKQAQEK 216
R F G D +D+ DE+ T EK
Sbjct: 399 RPFLGFDGADVIADEVYTTCTLGMEK 424
>sp|Q9F6X5|BCHB_CHLAA Light-independent protochlorophyllide reductase subunit B
OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635
/ J-10-fl) GN=bchB PE=3 SV=1
Length = 541
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 134 GVTDNVVYVQEF--VARTLKSAFPHLT-ENQIKVTVQGMFDFNNDLPAFKEHLRDFLVQI 190
G D V+ EF VA + + P L Q++ +D N + + H+ + L+
Sbjct: 339 GYVDEVLVTDEFQVVADRIAALRPELVCGTQMERHTSRRYDLNCMVISPPTHIENHLLAY 398
Query: 191 REFTGEDDSDLFLDEIEQTLKQAQEK 216
R F G D +D+ DE+ T EK
Sbjct: 399 RPFLGFDGADVIADEVYTTCTLGMEK 424
>sp|Q5WEP3|HEM1_BACSK Glutamyl-tRNA reductase OS=Bacillus clausii (strain KSM-K16)
GN=hemA PE=3 SV=1
Length = 454
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 130 PLAPGVTDNVVYVQEFVARTLKSAFPHLTENQIKVTVQGMFDFNNDLPAFKEHLRDFLVQ 189
PL + + + +Q +++ PHL+E IKV + N L LRD L +
Sbjct: 343 PLITALREKALQIQGDTMESIERKLPHLSERDIKVLNKHTKSIVNQL------LRDPLTR 396
Query: 190 IREFTGEDDS 199
++E E D+
Sbjct: 397 VKELAAEPDA 406
>sp|P45861|YWJA_BACSU Uncharacterized ABC transporter ATP-binding protein YwjA
OS=Bacillus subtilis (strain 168) GN=ywjA PE=3 SV=1
Length = 575
Score = 30.8 bits (68), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 18/144 (12%)
Query: 1 MINKDFEEYPEHRTNFFLLLQAVNLHCFPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADT 60
M+ + F Y ++T FFL F I +L I+ F T+ D
Sbjct: 1 MLRQFFSYYKPYKTLFFL----------DFFSAIAGGLMELSFPLIVNYFIDTLLPGRDW 50
Query: 61 GLMILHQLLVNVCHDAQSAAQSFYVTYFTEILTHVFSVVTDTSHSASLAHHAQILSYMFK 120
GL+I + + + SA Q + VTY+ H+ + +T SL H Q LS FK
Sbjct: 51 GLIIATSIGLFAVYALSSALQ-YIVTYWG----HMLGINIETDMRKSLFDHLQKLS--FK 103
Query: 121 LVETREVAAPLAPGVTDNVVYVQE 144
+ + ++ +T++++Y+ E
Sbjct: 104 FYDNNKTGTLMSK-LTNDLMYIGE 126
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,272,245
Number of Sequences: 539616
Number of extensions: 2894518
Number of successful extensions: 10165
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 10139
Number of HSP's gapped (non-prelim): 31
length of query: 223
length of database: 191,569,459
effective HSP length: 113
effective length of query: 110
effective length of database: 130,592,851
effective search space: 14365213610
effective search space used: 14365213610
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)