Query psy4089
Match_columns 223
No_of_seqs 108 out of 170
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 16:35:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4089.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4089hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08767 CRM1_C: CRM1 C termin 100.0 3.4E-66 7.3E-71 470.3 21.9 195 1-195 125-319 (319)
2 COG5101 CRM1 Importin beta-rel 100.0 4.9E-61 1.1E-65 461.7 19.1 208 1-212 839-1046(1053)
3 KOG2020|consensus 100.0 3.3E-41 7.1E-46 342.0 17.6 212 1-215 819-1032(1041)
4 PF12243 CTK3: CTD kinase subu 60.1 96 0.0021 25.5 12.5 128 11-169 5-135 (139)
5 PF12755 Vac14_Fab1_bd: Vacuol 55.6 84 0.0018 23.9 7.4 62 35-104 21-82 (97)
6 KOG4541|consensus 55.0 1.9E+02 0.004 29.7 11.4 69 2-73 563-631 (748)
7 smart00546 CUE Domain that may 52.8 23 0.0005 22.7 3.4 23 146-168 5-27 (43)
8 PF11864 DUF3384: Domain of un 52.3 1.3E+02 0.0028 28.9 9.9 56 138-194 150-208 (464)
9 PF07299 FBP: Fibronectin-bind 48.6 37 0.00081 29.8 5.0 68 109-193 11-78 (208)
10 PF12333 Ipi1_N: Rix1 complex 43.0 1.2E+02 0.0026 23.2 6.6 57 39-102 9-65 (102)
11 PF08569 Mo25: Mo25-like; Int 42.2 2.9E+02 0.0063 25.8 13.9 103 9-124 136-239 (335)
12 PF04858 TH1: TH1 protein; In 41.3 1.8E+02 0.0039 29.4 9.2 96 86-195 462-560 (584)
13 PLN03076 ARF guanine nucleotid 41.1 2.4E+02 0.0052 32.4 10.8 88 16-103 1244-1360(1780)
14 PF02845 CUE: CUE domain; Int 40.7 43 0.00094 21.3 3.2 27 147-176 5-31 (42)
15 KOG2081|consensus 36.7 1.9E+02 0.004 29.2 8.3 86 11-97 262-347 (559)
16 cd03572 ENTH_epsin_related ENT 32.8 1.2E+02 0.0025 24.4 5.2 49 19-72 21-69 (122)
17 KOG2022|consensus 32.7 6.6E+02 0.014 27.1 17.5 166 6-188 803-972 (982)
18 PF04510 DUF577: Family of unk 29.3 2.7E+02 0.0058 24.0 7.1 89 15-117 20-108 (174)
19 PF08623 TIP120: TATA-binding 27.8 2E+02 0.0044 24.4 6.1 98 11-124 42-144 (169)
20 PF00790 VHS: VHS domain; Int 27.3 2.9E+02 0.0063 21.9 6.7 80 36-121 37-116 (140)
21 KOG0031|consensus 26.4 49 0.0011 28.2 2.1 43 151-193 20-64 (171)
22 cd03561 VHS VHS domain family; 26.4 3.2E+02 0.007 21.5 10.4 81 36-123 32-112 (133)
23 KOG0889|consensus 25.9 9.2E+02 0.02 30.1 12.3 34 40-73 983-1016(3550)
24 PF04802 SMK-1: Component of I 25.8 82 0.0018 27.2 3.4 77 86-189 4-80 (193)
25 KOG1410|consensus 25.6 1.3E+02 0.0027 31.7 5.1 70 4-73 871-944 (1082)
26 cd04436 DEP_fRgd2 DEP (Disheve 24.9 2E+02 0.0043 21.9 4.9 57 112-172 3-61 (84)
27 KOG4310|consensus 24.7 5.5E+02 0.012 23.9 8.6 84 79-178 214-308 (373)
28 cd03568 VHS_STAM VHS domain fa 24.4 3.9E+02 0.0084 21.7 9.8 79 36-123 32-110 (144)
29 KOG2753|consensus 24.1 6.5E+02 0.014 24.2 13.7 111 21-149 46-157 (378)
30 cd00197 VHS_ENTH_ANTH VHS, ENT 23.9 3.2E+02 0.007 20.6 7.0 39 35-73 31-69 (115)
31 PF06466 PCAF_N: PCAF (P300/CB 23.1 3.1E+02 0.0068 24.9 6.7 93 55-165 77-169 (252)
32 TIGR01673 holin_LLH phage holi 23.1 1.7E+02 0.0037 23.0 4.5 34 137-170 67-101 (108)
33 PF02197 RIIa: Regulatory subu 22.8 1.5E+02 0.0033 18.8 3.4 30 64-93 6-35 (38)
34 PF03474 DMA: DMRTA motif; In 22.7 1.2E+02 0.0025 19.9 2.9 23 147-169 5-27 (39)
35 KOG0151|consensus 22.6 2.3E+02 0.0049 29.7 6.2 76 40-117 448-542 (877)
36 cd01040 globin Globins are hem 22.3 3.3E+02 0.0071 20.4 6.0 12 6-17 31-42 (140)
37 KOG2023|consensus 22.0 1.6E+02 0.0034 30.8 5.0 43 8-51 674-728 (885)
38 PRK02877 hypothetical protein; 21.4 1.4E+02 0.003 23.4 3.6 34 181-214 30-66 (106)
39 PF01480 PWI: PWI domain; Int 21.4 1.2E+02 0.0026 21.9 3.1 44 143-187 5-53 (77)
40 KOG1319|consensus 21.4 1.2E+02 0.0025 26.8 3.4 43 15-57 167-211 (229)
41 PHA02819 hypothetical protein; 21.2 2.2E+02 0.0048 21.0 4.4 27 90-116 22-52 (71)
42 cd07357 HN_L-whirlin_R2_like S 20.9 71 0.0015 24.2 1.8 30 141-180 27-56 (81)
43 PF10274 ParcG: Parkin co-regu 20.7 3.3E+02 0.0071 23.5 6.1 63 23-86 57-124 (183)
No 1
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=100.00 E-value=3.4e-66 Score=470.25 Aligned_cols=195 Identities=52% Similarity=0.912 Sum_probs=183.7
Q ss_pred CcccccccChhhhHHHHHHHHHHHhcchhhhhcCCchhHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHhcccchHHH
Q psy4089 1 MINKDFEEYPEHRTNFFLLLQAVNLHCFPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADTGLMILHQLLVNVCHDAQSAA 80 (223)
Q Consensus 1 MI~kdf~~yPEhR~~Ff~LL~ai~~~cF~all~lp~~~fklvidsi~Wa~kHt~r~I~e~GL~il~~ll~n~~~~~~~~~ 80 (223)
||++||++|||||++||+||++++++||++++++||++|+++||||+||+||++|+|+++||+++.++++|+...+++++
T Consensus 125 MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~ 204 (319)
T PF08767_consen 125 MINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFA 204 (319)
T ss_dssp HHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHH
T ss_pred HHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999987445899
Q ss_pred HHHHHHHHHHHHHHHhHHhcCCCchhhhHHHHHHHHHHHHHHHhCcccccCCCCCCCcHHHHHHHHHHHHHhhCCCCCHH
Q psy4089 81 QSFYVTYFTEILTHVFSVVTDTSHSASLAHHAQILSYMFKLVETREVAAPLAPGVTDNVVYVQEFVARTLKSAFPHLTEN 160 (223)
Q Consensus 81 ~~Fy~~yy~~il~~vf~VlTDt~HksgF~~q~~iL~~Lf~lve~~~i~~pl~~~~~~n~~~v~~~l~~lL~~~Fp~l~~~ 160 (223)
++||++||++++++||+|+||++||+||++||.+|++||++|++|.|++|+++++++|..||++|++++|+++|||++++
T Consensus 205 ~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~ve~~~i~~~l~~~~~~n~~~v~~~i~~~L~~~Fp~l~~~ 284 (319)
T PF08767_consen 205 NQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFRLVESGSIQVPLFDPGMSNQEFVSEYIANLLSEAFPNLSPK 284 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHHHHHTT-SSSSSSSTTT-HHHHHHHHHHHHHHHH-TTS-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHcccccccccCCCCccHHHHHHHHHHHHHHhCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999778999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHhHhhhhccC
Q psy4089 161 QIKVTVQGMFDFNNDLPAFKEHLRDFLVQIREFTG 195 (223)
Q Consensus 161 qi~~FV~~lf~~~~d~~~Fk~~lrDFLIqiKEf~g 195 (223)
||+.||.|||+.++|+.+||+||||||||+|||+|
T Consensus 285 qi~~fv~~Lf~~~~d~~~Fk~~lrDFlI~~kef~g 319 (319)
T PF08767_consen 285 QIENFVQGLFELNNDPEKFKTHLRDFLIQLKEFSG 319 (319)
T ss_dssp HHHHHHHHHHHTTT-HHHHHHHHHHHHHHHTSTTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhccC
Confidence 99999999999999999999999999999999988
No 2
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=100.00 E-value=4.9e-61 Score=461.72 Aligned_cols=208 Identities=38% Similarity=0.735 Sum_probs=198.0
Q ss_pred CcccccccChhhhHHHHHHHHHHHhcchhhhhcCCchhHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHhcccchHHH
Q psy4089 1 MINKDFEEYPEHRTNFFLLLQAVNLHCFPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADTGLMILHQLLVNVCHDAQSAA 80 (223)
Q Consensus 1 MI~kdf~~yPEhR~~Ff~LL~ai~~~cF~all~lp~~~fklvidsi~Wa~kHt~r~I~e~GL~il~~ll~n~~~~~~~~~ 80 (223)
||+|||.||||||.+||+||++||..||+||+++|+++||+|+|+|+|+|||.+|+|+++||+|+.++++|+...++.++
T Consensus 839 mi~kdf~EypEhr~~f~~Ll~~inl~sF~afl~~p~p~Fklv~nti~wsfkhi~RDv~~~gLnill~l~kn~~~mg~~~~ 918 (1053)
T COG5101 839 MIVKDFDEYPEHRKNFLLLLENINLFSFSAFLSFPQPSFKLVYNTILWSFKHINRDVSDLGLNILLILFKNCHEMGVPFI 918 (1053)
T ss_pred HHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCcHHHHHHHHHHHHHHHhccchHhhhhhHHHHHHHHHHHHhCCchH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999987667899
Q ss_pred HHHHHHHHHHHHHHHhHHhcCCCchhhhHHHHHHHHHHHHHHHhCcccccCCCCCCCcHHHHHHHHHHHHHhhCCCCCHH
Q psy4089 81 QSFYVTYFTEILTHVFSVVTDTSHSASLAHHAQILSYMFKLVETREVAAPLAPGVTDNVVYVQEFVARTLKSAFPHLTEN 160 (223)
Q Consensus 81 ~~Fy~~yy~~il~~vf~VlTDt~HksgF~~q~~iL~~Lf~lve~~~i~~pl~~~~~~n~~~v~~~l~~lL~~~Fp~l~~~ 160 (223)
++||++||++++++||+|+||++|||||+.||.+|+.||++|++|+|++|+||...+|..++.+|+++++.++|||++.+
T Consensus 919 n~F~~~yy~s~l~~il~vltDsDhKsgF~~Q~Llla~li~lv~dnkisVPlyd~~~~n~~~lseyi~~l~~~sfp~it~e 998 (1053)
T COG5101 919 NQFYAQYYMSTLENILGVLTDSDHKSGFDQQCLLLAFLIRLVKDNKISVPLYDGINPNITILSEYIVGLFVKSFPNITQE 998 (1053)
T ss_pred HHHHHHHHHHHHHHHHeeeeccchhccchHHHHHHHHHHHHHhccccccccccCCCCchhhHHHHHHHHHHhhcCcccHH
Confidence 99999999999999999999999999999999999999999999999999999878899999999999999999999999
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHhHhhhhccCCCCchhcHHHHHHHHHH
Q psy4089 161 QIKVTVQGMFDFNNDLPAFKEHLRDFLVQIREFTGEDDSDLFLDEIEQTLKQ 212 (223)
Q Consensus 161 qi~~FV~~lf~~~~d~~~Fk~~lrDFLIqiKEf~g~d~~dL~~eEre~~~~~ 212 (223)
||..|..|||++|+|..-||+|+|||+|++|||||+.+ ++|++..+-+
T Consensus 999 ~v~~f~~~l~~~~~d~~ifk~~~~df~vkv~e~g~d~~----~qe~~~~~~e 1046 (1053)
T COG5101 999 SVKIFSVGLFELCGDDEIFKEHVEDFRVKVYEFGTDED----LQEEIDLKNE 1046 (1053)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHhhheeeeCCCcc----hhHHHHHHHH
Confidence 99999999999999999999999999999999988543 4565554433
No 3
>KOG2020|consensus
Probab=100.00 E-value=3.3e-41 Score=342.04 Aligned_cols=212 Identities=49% Similarity=0.846 Sum_probs=203.4
Q ss_pred CcccccccChhhhHHHHHHHHHHHhcchhhhhcCCchhHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHhcccchHHH
Q psy4089 1 MINKDFEEYPEHRTNFFLLLQAVNLHCFPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADTGLMILHQLLVNVCHDAQSAA 80 (223)
Q Consensus 1 MI~kdf~~yPEhR~~Ff~LL~ai~~~cF~all~lp~~~fklvidsi~Wa~kHt~r~I~e~GL~il~~ll~n~~~~~~~~~ 80 (223)
||++||++|||||.+|++++++++.+||+++.++|++++|+++|||+|+++|++|+|+++||+++.++++++++.+ ..+
T Consensus 819 m~~~d~qe~~e~~~~f~~lle~l~~~~~~~~~~l~~~~~~~~~~si~~~f~h~~r~i~~~~l~~l~~l~k~~~~~~-~~~ 897 (1041)
T KOG2020|consen 819 MINKDFQEYPEHRLNFLLLLEALLLFCFPAFSELPADQVKLVSDSIVWAFHHTMRNIAENGLNILLELLKNLAEME-KFA 897 (1041)
T ss_pred ccccccccchHHHHHHHHHHHHHHHhhhHHHHcCCchhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhh-HHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998655 689
Q ss_pred HHHHHHHHHHHHHHHhHHhcCCCchhhhHHHHHHHHHHHHHHHhCcccccCCCC-C-CCcHHHHHHHHHHHHHhhCCCCC
Q psy4089 81 QSFYVTYFTEILTHVFSVVTDTSHSASLAHHAQILSYMFKLVETREVAAPLAPG-V-TDNVVYVQEFVARTLKSAFPHLT 158 (223)
Q Consensus 81 ~~Fy~~yy~~il~~vf~VlTDt~HksgF~~q~~iL~~Lf~lve~~~i~~pl~~~-~-~~n~~~v~~~l~~lL~~~Fp~l~ 158 (223)
++||++||.++++++++|.||++|++||+.|+..++.||++++++++..||++. + ..|.+|+++|+.++|..+||+++
T Consensus 898 ~~~~~~~~~~~l~~~~~~~~~~~~~~~f~~~~L~~~~l~~l~~~~~~~~~l~~~~~v~~n~~~L~e~i~~~l~~~f~~~~ 977 (1041)
T KOG2020|consen 898 NAFYQTYFLSLLQKIIAVLTDTDHKAGFTKQVLKLQFLFRLVESAKLHTPLLQGNVVHGNQAFLREYIYGLLRPAFPNLT 977 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhcchHHHHHHHHHHHHHHhhhHHHhhccccccchHHHHHHHHHHHhhhhhchhhc
Confidence 999999999999999999999999999999999999999999999999999994 3 23888999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCChhHHHHHHHHHhHhhhhccCCCCchhcHHHHHHHHHHHHH
Q psy4089 159 ENQIKVTVQGMFDFNNDLPAFKEHLRDFLVQIREFTGEDDSDLFLDEIEQTLKQAQE 215 (223)
Q Consensus 159 ~~qi~~FV~~lf~~~~d~~~Fk~~lrDFLIqiKEf~g~d~~dL~~eEre~~~~~~~~ 215 (223)
+.++..|+.|+|..++|.+.||.++|| +++||++|+++.++|.+|++.+..++..
T Consensus 978 ~~~v~~~~~~~~~~~~~~~~~k~~~~d--~~~~e~~~~~~~~l~~~e~~~~~~r~~~ 1032 (1041)
T KOG2020|consen 978 DEQVRAFDIGLFDECKDVSPFKDHVRD--VQIKEFGGQDTSDLFREEAEIRLLRANQ 1032 (1041)
T ss_pred hHHHHHHhHHHHHHhcccchhhcchhh--HHHHHhcccchHHHHHHHhhHHhhhhhc
Confidence 999999999999999999999999999 9999999999999999999988777654
No 4
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=60.06 E-value=96 Score=25.48 Aligned_cols=128 Identities=16% Similarity=0.203 Sum_probs=78.5
Q ss_pred hhhHHHHHHHHHHHhcchhhhhcCCchhHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Q psy4089 11 EHRTNFFLLLQAVNLHCFPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADTGLMILHQLLVNVCHDAQSAAQSFYVTYFTE 90 (223)
Q Consensus 11 EhR~~Ff~LL~ai~~~cF~all~lp~~~fklvidsi~Wa~kHt~r~I~e~GL~il~~ll~n~~~~~~~~~~~Fy~~yy~~ 90 (223)
|-|..|=.+|+.+|. . ...+--+.-.|+|| ++.+|-=..++.+-++.-+- . .-++-||
T Consensus 5 E~r~~F~~~L~~L~a-----------S-~qSi~kaa~fAlk~--~~~~edL~~cIle~le~~~l-N-~R~nI~~------ 62 (139)
T PF12243_consen 5 EVRMQFTQLLRRLNA-----------S-QQSIQKAAQFALKN--RDMEEDLWSCILEQLEKENL-N-TRINIFY------ 62 (139)
T ss_pred HHHHHHHHHHHHcch-----------h-HHHHHHHHHHHHHc--cccHHHHHHHHHHHHhccch-h-hHHHHHH------
Confidence 568888888887653 2 35566788999999 88988888887777765521 1 2333332
Q ss_pred HHHHHhHHhcCCCchhh--hHHHHHH-HHHHHHHHHhCcccccCCCCCCCcHHHHHHHHHHHHHhhCCCCCHHHHHHHHH
Q psy4089 91 ILTHVFSVVTDTSHSAS--LAHHAQI-LSYMFKLVETREVAAPLAPGVTDNVVYVQEFVARTLKSAFPHLTENQIKVTVQ 167 (223)
Q Consensus 91 il~~vf~VlTDt~Hksg--F~~q~~i-L~~Lf~lve~~~i~~pl~~~~~~n~~~v~~~l~~lL~~~Fp~l~~~qi~~FV~ 167 (223)
.+.+++|..|++| ...-... =+.|-++|.. | +|--..+..|..-++..+.++-.. -.+++..++....
T Consensus 63 ----fID~l~e~~~~~~~~~~~Yv~~l~~dL~~Iv~~--V-~P~~~~g~~N~~~~~kvL~~~~~k--~~l~~~~~~~~~~ 133 (139)
T PF12243_consen 63 ----FIDSLCESSQKSKKYNYPYVSMLQRDLPRIVDA--V-APPDNSGAANLKSVRKVLKNWSKK--KILDPEEYEEIEA 133 (139)
T ss_pred ----HHHHHHHHHHhcccccchhHHHHHHHHHHHHHH--h-CCCCCccchHHHHHHHHHHHHHHc--CCCCHHHHHHHHH
Confidence 2334677777777 4444444 4445566653 3 342111234555677777776543 3567777777665
Q ss_pred HH
Q psy4089 168 GM 169 (223)
Q Consensus 168 ~l 169 (223)
.|
T Consensus 134 ~l 135 (139)
T PF12243_consen 134 SL 135 (139)
T ss_pred HH
Confidence 54
No 5
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=55.60 E-value=84 Score=23.95 Aligned_cols=62 Identities=15% Similarity=0.165 Sum_probs=50.9
Q ss_pred CchhHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhHHhcCCCc
Q psy4089 35 PQPQFKLVLDSIIWAFKHTMRNVADTGLMILHQLLVNVCHDAQSAAQSFYVTYFTEILTHVFSVVTDTSH 104 (223)
Q Consensus 35 p~~~fklvidsi~Wa~kHt~r~I~e~GL~il~~ll~n~~~~~~~~~~~Fy~~yy~~il~~vf~VlTDt~H 104 (223)
.+.+++.++..|+=.+...+..|---+.+.++.+.+.... +.. .||-.|+.-++.++.|++-
T Consensus 21 ~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~---~~l-----~~f~~IF~~L~kl~~D~d~ 82 (97)
T PF12755_consen 21 ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARG---EIL-----PYFNEIFDALCKLSADPDE 82 (97)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH---HHH-----HHHHHHHHHHHHHHcCCch
Confidence 5678999999999999999999999999999998855531 232 3778888888889999873
No 6
>KOG4541|consensus
Probab=55.04 E-value=1.9e+02 Score=29.65 Aligned_cols=69 Identities=9% Similarity=-0.040 Sum_probs=55.9
Q ss_pred cccccccChhhhHHHHHHHHHHHhcchhhhhcCCchhHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHhc
Q psy4089 2 INKDFEEYPEHRTNFFLLLQAVNLHCFPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADTGLMILHQLLVNVC 73 (223)
Q Consensus 2 I~kdf~~yPEhR~~Ff~LL~ai~~~cF~all~lp~~~fklvidsi~Wa~kHt~r~I~e~GL~il~~ll~n~~ 73 (223)
++.+.-.||+-=..||+|+--++...-.++-++|..-++....|+--|+. . ++..+||+.+.+-+--+.
T Consensus 563 m~~~lLk~P~lc~~~~~lIty~ce~~pe~la~~~~~l~~sl~qc~~LGMT--g-e~~s~~l~~~~e~v~hfg 631 (748)
T KOG4541|consen 563 MTLELLKYPKLCFDDVDLITYMCERAPEALASYHYKLKNSLNQCSGLGMT--G-ESHSAGLHTDPEGVFHFG 631 (748)
T ss_pred HHHHHHhchHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHhhccCCc--c-ccchHhhccChHhhhccc
Confidence 45566789999999999999999999999999998877776666655544 2 788899999888887765
No 7
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=52.85 E-value=23 Score=22.65 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=18.2
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHH
Q psy4089 146 VARTLKSAFPHLTENQIKVTVQG 168 (223)
Q Consensus 146 l~~lL~~~Fp~l~~~qi~~FV~~ 168 (223)
....|+..||++++.+|+.-+..
T Consensus 5 ~v~~L~~mFP~l~~~~I~~~L~~ 27 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIKAVLEA 27 (43)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHH
Confidence 45567889999999999886653
No 8
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=52.30 E-value=1.3e+02 Score=28.91 Aligned_cols=56 Identities=20% Similarity=0.275 Sum_probs=38.7
Q ss_pred cHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCC---ChhHHHHHHHHHhHhhhhcc
Q psy4089 138 NVVYVQEFVARTLKSAFPHLTENQIKVTVQGMFDFNN---DLPAFKEHLRDFLVQIREFT 194 (223)
Q Consensus 138 n~~~v~~~l~~lL~~~Fp~l~~~qi~~FV~~lf~~~~---d~~~Fk~~lrDFLIqiKEf~ 194 (223)
+..-+-+++.++++-.|.+++++.|...|..++..|. +...-+..|. ++-.+=-|+
T Consensus 150 ~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~-vldaii~y~ 208 (464)
T PF11864_consen 150 NLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLS-VLDAIITYG 208 (464)
T ss_pred hHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHH-HHHHHHHcC
Confidence 3346778999999999999999999999998888754 3344444443 333333343
No 9
>PF07299 FBP: Fibronectin-binding protein (FBP); InterPro: IPR010841 This entry consists of several bacterial fibronectin-binding proteins which are thought to be involved in virulence in Listeria species [,].; PDB: 4ADO_B 4ADN_B 2YB5_F.
Probab=48.60 E-value=37 Score=29.80 Aligned_cols=68 Identities=19% Similarity=0.379 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHhCcccccCCCCCCCcHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCChhHHHHHHHHHhH
Q psy4089 109 AHHAQILSYMFKLVETREVAAPLAPGVTDNVVYVQEFVARTLKSAFPHLTENQIKVTVQGMFDFNNDLPAFKEHLRDFLV 188 (223)
Q Consensus 109 ~~q~~iL~~Lf~lve~~~i~~pl~~~~~~n~~~v~~~l~~lL~~~Fp~l~~~qi~~FV~~lf~~~~d~~~Fk~~lrDFLI 188 (223)
|.|+..|.+-..-|-+.++ ..-|+.+..+.+...||+++++| +.++..+.+.. +..+|-. ||-
T Consensus 11 k~q~~~L~~~~~tvnD~~v-----------i~a~~~~~~~ki~~~f~~~~~eq-~~ll~~i~~i~-~~~~~~~----~L~ 73 (208)
T PF07299_consen 11 KKQVYQLVNAYRTVNDPKV-----------IEAVKSLAIEKILELFPELTEEQ-KELLEQIMDIK-TREEAEK----YLE 73 (208)
T ss_dssp HHHHHHHHHHHHC-T-CCC-----------CHHHHHHHHHHHHHHHCTTTHHH-CCHHHHHTSTT--HHHHHH----HHH
T ss_pred HHHHHHHHHHHhccCCHHH-----------HHHHHHHHHHHHHHHcccCCHHH-HHHHHHHhccC-CHHHHHH----HHH
Confidence 4556666555444443222 23688888899999999999998 66888887774 6555443 444
Q ss_pred hhhhc
Q psy4089 189 QIREF 193 (223)
Q Consensus 189 qiKEf 193 (223)
+||+|
T Consensus 74 ~L~~y 78 (208)
T PF07299_consen 74 ELKPY 78 (208)
T ss_dssp HHHCC
T ss_pred HHHHH
Confidence 45555
No 10
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=43.02 E-value=1.2e+02 Score=23.15 Aligned_cols=57 Identities=19% Similarity=0.266 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhHHhcCC
Q psy4089 39 FKLVLDSIIWAFKHTMRNVADTGLMILHQLLVNVCHDAQSAAQSFYVTYFTEILTHVFSVVTDT 102 (223)
Q Consensus 39 fklvidsi~Wa~kHt~r~I~e~GL~il~~ll~n~~~~~~~~~~~Fy~~yy~~il~~vf~VlTDt 102 (223)
+..++=-|.-|+-|-.++|-..+++++.-+|+.... . .+..+...++.+.+.++--.
T Consensus 9 ~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~---~----~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 9 FPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPD---E----LCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCCh---H----hHhhhHHHHHHHHHHHHCCC
Confidence 455666778899999999999999999999988742 2 45567777888888888766
No 11
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=42.20 E-value=2.9e+02 Score=25.77 Aligned_cols=103 Identities=12% Similarity=0.177 Sum_probs=67.5
Q ss_pred ChhhhHHHHHHHHHHHhcc-hhhhhcCCchhHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Q psy4089 9 YPEHRTNFFLLLQAVNLHC-FPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADTGLMILHQLLVNVCHDAQSAAQSFYVTY 87 (223)
Q Consensus 9 yPEhR~~Ff~LL~ai~~~c-F~all~lp~~~fklvidsi~Wa~kHt~r~I~e~GL~il~~ll~n~~~~~~~~~~~Fy~~y 87 (223)
.||.=..-=.+||.+.+|= +-..+ |.++.|..+++. +..+.-+||.-++.++.++|.+ .+ ..+.+|....
T Consensus 136 ~~dial~~g~mlRec~k~e~l~~~i-L~~~~f~~ff~~----~~~~~Fdiasdaf~t~~~llt~---hk-~~~a~fl~~n 206 (335)
T PF08569_consen 136 NPDIALNCGDMLRECIKHESLAKII-LYSECFWKFFKY----VQLPNFDIASDAFSTFKELLTR---HK-KLVAEFLSNN 206 (335)
T ss_dssp STTTHHHHHHHHHHHTTSHHHHHHH-HTSGGGGGHHHH----TTSSSHHHHHHHHHHHHHHHHS---SH-HHHHHHHHHT
T ss_pred CccccchHHHHHHHHHhhHHHHHHH-hCcHHHHHHHHH----hcCCccHhHHHHHHHHHHHHhc---cH-HHHHHHHHHH
Confidence 4555555556777777741 11111 346667776663 5789999999999999999964 23 6778888888
Q ss_pred HHHHHHHHhHHhcCCCchhhhHHHHHHHHHHHHHHHh
Q psy4089 88 FTEILTHVFSVVTDTSHSASLAHHAQILSYMFKLVET 124 (223)
Q Consensus 88 y~~il~~vf~VlTDt~HksgF~~q~~iL~~Lf~lve~ 124 (223)
|-.+.. .+.-+-.+ +++-.+-+-|.-|=.++.+
T Consensus 207 ~d~ff~-~~~~Ll~s---~NYvtkrqslkLL~ellld 239 (335)
T PF08569_consen 207 YDRFFQ-KYNKLLES---SNYVTKRQSLKLLGELLLD 239 (335)
T ss_dssp HHHHHH-HHHHHCT----SSHHHHHHHHHHHHHHHHS
T ss_pred HHHHHH-HHHHHccC---CCeEeehhhHHHHHHHHHc
Confidence 877777 44444443 4666666666666555553
No 12
>PF04858 TH1: TH1 protein; InterPro: IPR006942 TH1 is a highly conserved but uncharacterised metazoan protein. No homologue has been identified in Caenorhabditis elegans []. TH1 binds specifically to A-Raf kinase [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=41.32 E-value=1.8e+02 Score=29.40 Aligned_cols=96 Identities=18% Similarity=0.242 Sum_probs=69.5
Q ss_pred HHHHHHHHHHhHHhcCCC-chhhhHHHHHHHHHHHHHHHhCcccccCCCCCCCcHHHHHHHHHHHHHhhCCCCCHHHHHH
Q psy4089 86 TYFTEILTHVFSVVTDTS-HSASLAHHAQILSYMFKLVETREVAAPLAPGVTDNVVYVQEFVARTLKSAFPHLTENQIKV 164 (223)
Q Consensus 86 ~yy~~il~~vf~VlTDt~-HksgF~~q~~iL~~Lf~lve~~~i~~pl~~~~~~n~~~v~~~l~~lL~~~Fp~l~~~qi~~ 164 (223)
.--+.+|...|...+|.. .-....++-.+|-+|+.++.-|-+ .| |-+|+.+...+ +.++++.|.-
T Consensus 462 ~~vl~lL~~~le~~~~~l~~l~~le~kr~ilD~~V~L~s~G~V-lP-----------Vl~~i~~~~~~--~~iD~SLiRy 527 (584)
T PF04858_consen 462 PSVLDLLVRLLESEGDELDILVQLELKRTILDRMVHLLSRGYV-LP-----------VLEYIRKCWAR--GDIDPSLIRY 527 (584)
T ss_pred HHHHHHHHHHHHccCCcccHHHHHHHHHHHHHHHHHHHhCCee-eh-----------HHHHHHHHHhc--cCCcHHHHHH
Confidence 344566666677666433 446788999999999999999865 45 34566655432 3689999999
Q ss_pred HHHHHhhcCCCh--hHHHHHHHHHhHhhhhccC
Q psy4089 165 TVQGMFDFNNDL--PAFKEHLRDFLVQIREFTG 195 (223)
Q Consensus 165 FV~~lf~~~~d~--~~Fk~~lrDFLIqiKEf~g 195 (223)
||..+.+....| ..|-.++-..+....-.++
T Consensus 528 Fv~eVLeii~PPYS~~Fv~~~l~ll~~~~i~~~ 560 (584)
T PF04858_consen 528 FVTEVLEIIGPPYSPEFVQLFLPLLENAEIRGG 560 (584)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhchhhhhh
Confidence 999999987765 6888888887776665554
No 13
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=41.15 E-value=2.4e+02 Score=32.40 Aligned_cols=88 Identities=9% Similarity=0.181 Sum_probs=64.1
Q ss_pred HHHHHHHHHhcchhhhhcCCchhHHHHHHHHH-HHhCCCCchHHHHHHHHHHHHHHHhcccc------------------
Q psy4089 16 FFLLLQAVNLHCFPAFLLIPQPQFKLVLDSII-WAFKHTMRNVADTGLMILHQLLVNVCHDA------------------ 76 (223)
Q Consensus 16 Ff~LL~ai~~~cF~all~lp~~~fklvidsi~-Wa~kHt~r~I~e~GL~il~~ll~n~~~~~------------------ 76 (223)
=|+.++.|....|+.+...|++.|...|+++. .|-.....||+-+++..+..+...+....
T Consensus 1244 AFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~ 1323 (1780)
T PLN03076 1244 AFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQ 1323 (1780)
T ss_pred HHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhcccccccccccccccccccc
Confidence 47788899999998887788899999999886 77555568888888887775533332100
Q ss_pred ---------hH-HHHHHHHHHHHHHHHHHhHHhcCCC
Q psy4089 77 ---------QS-AAQSFYVTYFTEILTHVFSVVTDTS 103 (223)
Q Consensus 77 ---------~~-~~~~Fy~~yy~~il~~vf~VlTDt~ 103 (223)
+. .....+..+++.+|...-.+.+|..
T Consensus 1324 ~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~R 1360 (1780)
T PLN03076 1324 SGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPR 1360 (1780)
T ss_pred ccccccccccccccchhHHHHHHHHHHHHHHHhcCCc
Confidence 00 1234556799999999988888865
No 14
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=40.67 E-value=43 Score=21.32 Aligned_cols=27 Identities=30% Similarity=0.526 Sum_probs=18.2
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHhhcCCCh
Q psy4089 147 ARTLKSAFPHLTENQIKVTVQGMFDFNNDL 176 (223)
Q Consensus 147 ~~lL~~~Fp~l~~~qi~~FV~~lf~~~~d~ 176 (223)
..-|+..||+++++.|..-+. ..++|.
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~---~~~~~v 31 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQ---ANNGDV 31 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHH---HTTTTH
T ss_pred HHHHHHHCCCCCHHHHHHHHH---HcCCCH
Confidence 455688999999999887553 344454
No 15
>KOG2081|consensus
Probab=36.72 E-value=1.9e+02 Score=29.22 Aligned_cols=86 Identities=9% Similarity=0.227 Sum_probs=63.4
Q ss_pred hhhHHHHHHHHHHHhcchhhhhcCCchhHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Q psy4089 11 EHRTNFFLLLQAVNLHCFPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADTGLMILHQLLVNVCHDAQSAAQSFYVTYFTE 90 (223)
Q Consensus 11 EhR~~Ff~LL~ai~~~cF~all~lp~~~fklvidsi~Wa~kHt~r~I~e~GL~il~~ll~n~~~~~~~~~~~Fy~~yy~~ 90 (223)
|++.+.=.+.-.+. ..|..+..-.|++|.-.+|-++-.-+|+..+|.+.+++.-+.+=+-+-..+..-+.+-|+.||..
T Consensus 262 d~~~a~~RIFtel~-eaf~~~i~~np~~~l~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~r 340 (559)
T KOG2081|consen 262 DKNEAICRIFTELG-EAFVVLISTNPEEFLRIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLR 340 (559)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHhhCCCcchhHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHH
Confidence 35554433333332 34555556677799999999999999999999999999887776665433225688899999999
Q ss_pred HHHHHhH
Q psy4089 91 ILTHVFS 97 (223)
Q Consensus 91 il~~vf~ 97 (223)
+++-+..
T Consensus 341 Lvs~l~~ 347 (559)
T KOG2081|consen 341 LVSLLKR 347 (559)
T ss_pred HHHHHHH
Confidence 9988764
No 16
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=32.80 E-value=1.2e+02 Score=24.44 Aligned_cols=49 Identities=14% Similarity=0.104 Sum_probs=41.1
Q ss_pred HHHHHHhcchhhhhcCCchhHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHh
Q psy4089 19 LLQAVNLHCFPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADTGLMILHQLLVNV 72 (223)
Q Consensus 19 LL~ai~~~cF~all~lp~~~fklvidsi~Wa~kHt~r~I~e~GL~il~~ll~n~ 72 (223)
++..|++-++. ++..+..++|-+.==.+|..|.|.-.+|+++..++.+-
T Consensus 21 ~~~Eia~~t~~-----s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G 69 (122)
T cd03572 21 LYEEIAKLTRK-----SVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKG 69 (122)
T ss_pred HHHHHHHHHHc-----CHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhC
Confidence 44566665554 56779999999999999999999999999999999775
No 17
>KOG2022|consensus
Probab=32.72 E-value=6.6e+02 Score=27.10 Aligned_cols=166 Identities=13% Similarity=0.159 Sum_probs=116.1
Q ss_pred cccChhhhHHHHHHHHHHHhcchhhhhcCCchhHHHHHH-HHHHHhCCCCchHHHHHHHHHHHHHHHhcccchHHHHHHH
Q psy4089 6 FEEYPEHRTNFFLLLQAVNLHCFPAFLLIPQPQFKLVLD-SIIWAFKHTMRNVADTGLMILHQLLVNVCHDAQSAAQSFY 84 (223)
Q Consensus 6 f~~yPEhR~~Ff~LL~ai~~~cF~all~lp~~~fklvid-si~Wa~kHt~r~I~e~GL~il~~ll~n~~~~~~~~~~~Fy 84 (223)
|.+-||.-..||.+++.+-+. -|.++.=....|+.+|- +-+-+++-++|-.--.+-+.+.+++..-.+.+-....++.
T Consensus 803 f~n~~Di~~~~~~~v~~ilkk-~P~~~~~~~~~~ts~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~~~s~~~~tv~~~V 881 (982)
T KOG2022|consen 803 FSNQPDIYLQLIGFVRQILKK-IPKFLEPSMLAFTSLILICAFILLNSPEPTTIRAASQFLTALATYATSHDLVTVTSVV 881 (982)
T ss_pred CCCCchHHHHHHHHHHHHHHh-CcCccccchHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHhhcccchhHHHHHHH
Confidence 567789999999988887765 34444333556777776 7777888888877777777777766555432223455555
Q ss_pred HHHHHHHHHHHhHHhcCCCchhhhHHHHHHHHHHHHHHHhCcccccCCCCCCCcHHHHHHHHHHHHH-hhCC--CCCHHH
Q psy4089 85 VTYFTEILTHVFSVVTDTSHSASLAHHAQILSYMFKLVETREVAAPLAPGVTDNVVYVQEFVARTLK-SAFP--HLTENQ 161 (223)
Q Consensus 85 ~~yy~~il~~vf~VlTDt~HksgF~~q~~iL~~Lf~lve~~~i~~pl~~~~~~n~~~v~~~l~~lL~-~~Fp--~l~~~q 161 (223)
+.-=-.++-.|+.-+--.--+|-...-+.||..|..= +..-.+.++...|. --|| ++++++
T Consensus 882 ~~~G~~Li~~im~~vgg~~~RS~ld~~aDIL~al~~k----------------~~se~r~wl~~~lq~~gfPs~~~s~e~ 945 (982)
T KOG2022|consen 882 AEIGPILIYAIMRGVGGEASRSTLDALADILLALNAK----------------FFSETRTWLKAVLQIPGFPSAGVSNEI 945 (982)
T ss_pred HhcchHHHHHHHHHhcCcCccchhHHHHHHHHHHHHh----------------hhHHHHHHHHHHhcCCCCCcccCChHH
Confidence 5555556666666666566677777778888775432 12245778887775 3688 689999
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHhH
Q psy4089 162 IKVTVQGMFDFNNDLPAFKEHLRDFLV 188 (223)
Q Consensus 162 i~~FV~~lf~~~~d~~~Fk~~lrDFLI 188 (223)
-+.|+..|+....++-.||.++--|=-
T Consensus 946 k~rf~t~llrer~n~R~~k~~il~~~L 972 (982)
T KOG2022|consen 946 KSRFVTSLLRERGNKRNFKQQILEFNL 972 (982)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHH
Confidence 999999999998898888888766633
No 18
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=29.32 E-value=2.7e+02 Score=23.97 Aligned_cols=89 Identities=12% Similarity=0.164 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhcchhhhhcCCchhHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Q psy4089 15 NFFLLLQAVNLHCFPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADTGLMILHQLLVNVCHDAQSAAQSFYVTYFTEILTH 94 (223)
Q Consensus 15 ~Ff~LL~ai~~~cF~all~lp~~~fklvidsi~Wa~kHt~r~I~e~GL~il~~ll~n~~~~~~~~~~~Fy~~yy~~il~~ 94 (223)
.=||.|+-|+.+==..++.++....-..-|+|.|.-+ +++ ..+..|...|- +..-..|.--|.-.+++.
T Consensus 20 s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~~-~e~---~kA~~IF~~L~-------~~l~~efl~~~~~~L~~~ 88 (174)
T PF04510_consen 20 SDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLSE-NEP---VKAFHIFICLP-------MPLYGEFLIPFMENLLPE 88 (174)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhhc-cch---HHHHHHHHhCC-------chhhhhHHHHHHHHHHHH
Confidence 4589999999987778888999999999999999664 333 45555443332 134566777777778889
Q ss_pred HhHHhcCCCchhhhHHHHHHHHH
Q psy4089 95 VFSVVTDTSHSASLAHHAQILSY 117 (223)
Q Consensus 95 vf~VlTDt~HksgF~~q~~iL~~ 117 (223)
+..++.++.- ....+-+|+.
T Consensus 89 ~~~~L~~p~~---~d~~~W~LAl 108 (174)
T PF04510_consen 89 ISKVLLPPEE---VDVEDWVLAL 108 (174)
T ss_pred HHHHcCCchh---ccHHHHHHHH
Confidence 9999998854 4444444443
No 19
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=27.81 E-value=2e+02 Score=24.39 Aligned_cols=98 Identities=12% Similarity=0.195 Sum_probs=64.4
Q ss_pred hhhHHHHHHHHHHHhcchhhhhcCCchhHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Q psy4089 11 EHRTNFFLLLQAVNLHCFPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADTGLMILHQLLVNVCHDAQSAAQSFYVTYFTE 90 (223)
Q Consensus 11 EhR~~Ff~LL~ai~~~cF~all~lp~~~fklvidsi~Wa~kHt~r~I~e~GL~il~~ll~n~~~~~~~~~~~Fy~~yy~~ 90 (223)
|-|..=|+.|-++...|+..+ + ...+++.|.-|++. +.+|--.+..++..+..... ...... ++
T Consensus 42 elRK~ayE~lytlLd~~~~~~---~---~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p---~~v~~~------Ld 105 (169)
T PF08623_consen 42 ELRKAAYECLYTLLDTCLSRI---D---ISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAP---EEVLQR------LD 105 (169)
T ss_dssp HHHHHHHHHHHHHHHSTCSSS-------HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-H---HHHHHC------CT
T ss_pred HHHHHHHHHHHHHHHHHHHhC---C---HHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCH---HHHHHH------HH
Confidence 689999999999999998764 3 56679999999997 99999988888777754331 122211 22
Q ss_pred HHHHHh-H----HhcCCCchhhhHHHHHHHHHHHHHHHh
Q psy4089 91 ILTHVF-S----VVTDTSHSASLAHHAQILSYMFKLVET 124 (223)
Q Consensus 91 il~~vf-~----VlTDt~HksgF~~q~~iL~~Lf~lve~ 124 (223)
-+.+-| . =+.+..-|.-..-|..+.+..++++..
T Consensus 106 ~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~ 144 (169)
T PF08623_consen 106 SLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKA 144 (169)
T ss_dssp TTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHH
Confidence 222222 2 235666677788888888877777663
No 20
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=27.28 E-value=2.9e+02 Score=21.92 Aligned_cols=80 Identities=15% Similarity=0.135 Sum_probs=51.0
Q ss_pred chhHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhHHhcCCCchhhhHHHHHHH
Q psy4089 36 QPQFKLVLDSIIWAFKHTMRNVADTGLMILHQLLVNVCHDAQSAAQSFYVTYFTEILTHVFSVVTDTSHSASLAHHAQIL 115 (223)
Q Consensus 36 ~~~fklvidsi~Wa~kHt~r~I~e~GL~il~~ll~n~~~~~~~~~~~Fy~~yy~~il~~vf~VlTDt~HksgF~~q~~iL 115 (223)
+..-+..+.+|.==++|..+++.-.+|.+|..+++|... .+..++.+.=|+ ..+..+++++.....=..+..+|
T Consensus 37 ~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~---~f~~ev~~~~fl---~~l~~l~~~~~~~~~~~Vk~k~l 110 (140)
T PF00790_consen 37 PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGP---RFHREVASKEFL---DELVKLIKSKKTDPETPVKEKIL 110 (140)
T ss_dssp TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHH---HHHHHHTSHHHH---HHHHHHHHHTTTHHHSHHHHHHH
T ss_pred CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCH---HHHHHHhHHHHH---HHHHHHHccCCCCchhHHHHHHH
Confidence 444588999999999999999999999999999999852 444444444333 34444444444322111444455
Q ss_pred HHHHHH
Q psy4089 116 SYMFKL 121 (223)
Q Consensus 116 ~~Lf~l 121 (223)
..+..-
T Consensus 111 ~ll~~W 116 (140)
T PF00790_consen 111 ELLQEW 116 (140)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
No 21
>KOG0031|consensus
Probab=26.44 E-value=49 Score=28.21 Aligned_cols=43 Identities=23% Similarity=0.409 Sum_probs=30.6
Q ss_pred HhhCCCCCHHHHHHHHHHHhhcCCChhHH--HHHHHHHhHhhhhc
Q psy4089 151 KSAFPHLTENQIKVTVQGMFDFNNDLPAF--KEHLRDFLVQIREF 193 (223)
Q Consensus 151 ~~~Fp~l~~~qi~~FV~~lf~~~~d~~~F--k~~lrDFLIqiKEf 193 (223)
++.|..++++||+.|=...=-..+|...| |+-|||+|-++=.-
T Consensus 20 SnvFamf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~ 64 (171)
T KOG0031|consen 20 SNVFAMFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKI 64 (171)
T ss_pred chHHHHhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCC
Confidence 46788899999999986532233344444 88999999987443
No 22
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=26.37 E-value=3.2e+02 Score=21.47 Aligned_cols=81 Identities=15% Similarity=0.071 Sum_probs=53.0
Q ss_pred chhHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhHHhcCCCchhhhHHHHHHH
Q psy4089 36 QPQFKLVLDSIIWAFKHTMRNVADTGLMILHQLLVNVCHDAQSAAQSFYVTYFTEILTHVFSVVTDTSHSASLAHHAQIL 115 (223)
Q Consensus 36 ~~~fklvidsi~Wa~kHt~r~I~e~GL~il~~ll~n~~~~~~~~~~~Fy~~yy~~il~~vf~VlTDt~HksgF~~q~~iL 115 (223)
+..=|..+.+|.==++|.++++.-.+|.++..+++|... .+...+-. ...+.+...++.++ .+..-..+..+|
T Consensus 32 ~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~---~f~~~i~s---~~fl~~l~~l~~~~-~~~~~~Vk~kil 104 (133)
T cd03561 32 PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGK---PFHLQVAD---KEFLLELVKIAKNS-PKYDPKVREKAL 104 (133)
T ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCh---HHHHHHhh---HHHHHHHHHHhCCC-CCCCHHHHHHHH
Confidence 455688999999999999999999999999999999852 34444444 12333344444443 333444555555
Q ss_pred HHHHHHHH
Q psy4089 116 SYMFKLVE 123 (223)
Q Consensus 116 ~~Lf~lve 123 (223)
..+..-..
T Consensus 105 ~ll~~W~~ 112 (133)
T cd03561 105 ELILAWSE 112 (133)
T ss_pred HHHHHHHH
Confidence 55444433
No 23
>KOG0889|consensus
Probab=25.93 E-value=9.2e+02 Score=30.07 Aligned_cols=34 Identities=15% Similarity=0.302 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHhc
Q psy4089 40 KLVLDSIIWAFKHTMRNVADTGLMILHQLLVNVC 73 (223)
Q Consensus 40 klvidsi~Wa~kHt~r~I~e~GL~il~~ll~n~~ 73 (223)
+.++|+|+=+++|++.+++..|..++..+.....
T Consensus 983 ~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~ 1016 (3550)
T KOG0889|consen 983 STFLDALVESLSHENSEMRPAGVRALKVIFSTST 1016 (3550)
T ss_pred HHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHH
Confidence 4589999999999999999999999888876644
No 24
>PF04802 SMK-1: Component of IIS longevity pathway SMK-1; InterPro: IPR006887 This is a conserved region which characterises a number of eukaryotic proteins of unknown function.
Probab=25.78 E-value=82 Score=27.17 Aligned_cols=77 Identities=19% Similarity=0.362 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhHHhcCCCchhhhHHHHHHHHHHHHHHHhCcccccCCCCCCCcHHHHHHHHHHHHHhhCCCCCHHHHHHH
Q psy4089 86 TYFTEILTHVFSVVTDTSHSASLAHHAQILSYMFKLVETREVAAPLAPGVTDNVVYVQEFVARTLKSAFPHLTENQIKVT 165 (223)
Q Consensus 86 ~yy~~il~~vf~VlTDt~HksgF~~q~~iL~~Lf~lve~~~i~~pl~~~~~~n~~~v~~~l~~lL~~~Fp~l~~~qi~~F 165 (223)
.-|..-|-++|...=|.....|+..-+.|...|+.+-+. .| +..++ + ++.-.-
T Consensus 4 ~~Yi~kL~~lF~~~E~~~~~~~L~~l~~Ivk~li~ln~~-~i------------------~e~ll-------s-de~i~~ 56 (193)
T PF04802_consen 4 ENYIKKLLDLFHQCEDLEDLEGLHLLFDIVKTLILLNDP-EI------------------FEILL-------S-DENIMD 56 (193)
T ss_pred hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCc-hH------------------HHHHh-------c-hHHHHH
Confidence 347777889999999999999999999999998875321 11 11111 2 223333
Q ss_pred HHHHhhcCCChhHHHHHHHHHhHh
Q psy4089 166 VQGMFDFNNDLPAFKEHLRDFLVQ 189 (223)
Q Consensus 166 V~~lf~~~~d~~~Fk~~lrDFLIq 189 (223)
|.|+.++..+.+.-|..=|+||-+
T Consensus 57 vvG~LEYDp~~~~~ka~hR~fL~~ 80 (193)
T PF04802_consen 57 VVGILEYDPEFPQPKANHREFLKE 80 (193)
T ss_pred HhhhhccCCcccccccchHHHHHh
Confidence 668889988888888344899866
No 25
>KOG1410|consensus
Probab=25.64 E-value=1.3e+02 Score=31.71 Aligned_cols=70 Identities=16% Similarity=0.218 Sum_probs=56.0
Q ss_pred cccccChhhhHHHHHHHHHHHhcchhhhhcCCchhHHHHHHHHHHHhCCCCchHHHHHHHH----HHHHHHHhc
Q psy4089 4 KDFEEYPEHRTNFFLLLQAVNLHCFPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADTGLMI----LHQLLVNVC 73 (223)
Q Consensus 4 kdf~~yPEhR~~Ff~LL~ai~~~cF~all~lp~~~fklvidsi~Wa~kHt~r~I~e~GL~i----l~~ll~n~~ 73 (223)
.|+.+||-...+.|.||..+++.--+.+.++.|+-|--++-||--|.+--+.-|+..+-.. +.-+.+++.
T Consensus 871 sD~l~Y~Klsqsyy~llE~l~qdhm~Fi~nL~~~vfm~ll~Si~sGLt~lDt~v~ssccsslD~i~tYlfk~it 944 (1082)
T KOG1410|consen 871 SDLLSYRKLSQSYYNLLEVLTQDHMPFITNLEPDVFMYLLRSISSGLTSLDTIVSSSCCSSLDTIVTYLFKRIT 944 (1082)
T ss_pred HHHHhHHHHHHHHhhHHHHHHhccchhhhcCcHHHHHHHHHHHHhccchhhHHHHhHHHHHHHHHHHHHHHHHh
Confidence 4889999999999999999999999999999999999999999888886666665544332 333445554
No 26
>cd04436 DEP_fRgd2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGAP (GTPase-activator protein) Rgd2-like proteins. Rgd2-like proteins share a common domain architecture, containing, beside the RhoGAP domain, a DEP and a FCH (Fes/CIP4 homology) domain. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5.
Probab=24.91 E-value=2e+02 Score=21.89 Aligned_cols=57 Identities=12% Similarity=0.206 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhCcccccCCCC--CCCcHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhc
Q psy4089 112 AQILSYMFKLVETREVAAPLAPG--VTDNVVYVQEFVARTLKSAFPHLTENQIKVTVQGMFDF 172 (223)
Q Consensus 112 ~~iL~~Lf~lve~~~i~~pl~~~--~~~n~~~v~~~l~~lL~~~Fp~l~~~qi~~FV~~lf~~ 172 (223)
..||.+|+.-+.-+..++||..+ .+++-.-+-+|+...+ |-=+-+..+.|=++|-+.
T Consensus 3 k~lL~~ml~~ip~~~~kvPilGty~nt~sG~~Iv~~L~~n~----~~~s~~~aE~fGQdLv~~ 61 (84)
T cd04436 3 KELLAAMLKEIPLADYKVPILGTYQNTSSGSEIVSWLQENM----PEKDLDAAEAFGQDLLNQ 61 (84)
T ss_pred HHHHHHHHHhCCCccceecccccccCcccHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhC
Confidence 36888998888888888998552 2444445556665554 334777888888888654
No 27
>KOG4310|consensus
Probab=24.67 E-value=5.5e+02 Score=23.86 Aligned_cols=84 Identities=19% Similarity=0.234 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHhcCCCchhhhHHHHHHHHHHHH-------HHHhCccc--ccCCC--CCCCcHHHHHHHHH
Q psy4089 79 AAQSFYVTYFTEILTHVFSVVTDTSHSASLAHHAQILSYMFK-------LVETREVA--APLAP--GVTDNVVYVQEFVA 147 (223)
Q Consensus 79 ~~~~Fy~~yy~~il~~vf~VlTDt~HksgF~~q~~iL~~Lf~-------lve~~~i~--~pl~~--~~~~n~~~v~~~l~ 147 (223)
.-++|+|+||..| |+-.|++++.-+-. .++++... .|+-. +|.++.+.+..-+.
T Consensus 214 KEeqFWqNYFYRi---------------gLIkQS~laq~~~~qqpa~~~~~eek~~Eed~~~AEaa~pktppvviksQ~k 278 (373)
T KOG4310|consen 214 KEEQFWQNYFYRI---------------GLIKQSALAQALAAQQPAAGKEEEEKGREEDDPLAEAAPPKTPPVVIKSQLK 278 (373)
T ss_pred HHHHHHHHHHHHH---------------HHHHHHHHHHHHhhcCCCCCchhhhcCcccccchhhccCCCCCCcchhhhhc
Confidence 4789999999987 77888888776532 12222111 12211 23334443333332
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHhhcCCChhH
Q psy4089 148 RTLKSAFPHLTENQIKVTVQGMFDFNNDLPA 178 (223)
Q Consensus 148 ~lL~~~Fp~l~~~qi~~FV~~lf~~~~d~~~ 178 (223)
+-...- .--+.-.|..||..-|..|+|..+
T Consensus 279 se~dEE-e~enePeVkE~VSdafdaCe~edE 308 (373)
T KOG4310|consen 279 SEEDEE-EIENEPEVKEFVSDAFDACEDEDE 308 (373)
T ss_pred chhhhh-hhccCchHHHHHHHHHhhhccchh
Confidence 221110 111334678899999998887543
No 28
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=24.38 E-value=3.9e+02 Score=21.71 Aligned_cols=79 Identities=15% Similarity=0.145 Sum_probs=56.5
Q ss_pred chhHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhHHhcCCCchhhhHHHHHHH
Q psy4089 36 QPQFKLVLDSIIWAFKHTMRNVADTGLMILHQLLVNVCHDAQSAAQSFYVTYFTEILTHVFSVVTDTSHSASLAHHAQIL 115 (223)
Q Consensus 36 ~~~fklvidsi~Wa~kHt~r~I~e~GL~il~~ll~n~~~~~~~~~~~Fy~~yy~~il~~vf~VlTDt~HksgF~~q~~iL 115 (223)
+..=|..+-+|.==++|.+++|.-.+|.+|..+++|... .+-.++... .++.++-.++.++.| -+.+..+|
T Consensus 32 ~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~---~fh~evask---~Fl~eL~kl~~~~~~---~~Vk~kil 102 (144)
T cd03568 32 ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGK---RFHQEVASR---DFTQELKKLINDRVH---PTVKEKLR 102 (144)
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCH---HHHHHHhhH---HHHHHHHHHhcccCC---HHHHHHHH
Confidence 444578889999999999999999999999999999963 455555554 444555566666633 36666666
Q ss_pred HHHHHHHH
Q psy4089 116 SYMFKLVE 123 (223)
Q Consensus 116 ~~Lf~lve 123 (223)
..+-...+
T Consensus 103 ~li~~W~~ 110 (144)
T cd03568 103 EVVKQWAD 110 (144)
T ss_pred HHHHHHHH
Confidence 65544444
No 29
>KOG2753|consensus
Probab=24.10 E-value=6.5e+02 Score=24.16 Aligned_cols=111 Identities=14% Similarity=0.253 Sum_probs=73.0
Q ss_pred HHHHhcchhhhhcCCchhHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHHHHHHhHHh
Q psy4089 21 QAVNLHCFPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADTGLMILHQLLVNVCHDAQ-SAAQSFYVTYFTEILTHVFSVV 99 (223)
Q Consensus 21 ~ai~~~cF~all~lp~~~fklvidsi~Wa~kHt~r~I~e~GL~il~~ll~n~~~~~~-~~~~~Fy~~yy~~il~~vf~Vl 99 (223)
..|..-| +.+..+|+-....++.||+--++ +-+ -|.++.+...+.+++...+. ..+ .--+.+|...|. .
T Consensus 46 ~~ii~~c-~v~~k~~ekdle~vlnsi~sLi~-~~~--~e~~e~~v~a~~ekva~q~n~~~~-----~l~L~vLsnLfn-~ 115 (378)
T KOG2753|consen 46 LMIIEAC-DVLAKIPEKDLECVLNSIVSLIK-NAP--PEKVEEMVKAICEKVAKQPNDKTA-----SLRLQVLSNLFN-G 115 (378)
T ss_pred HHHHHHh-HHhhcCCcchHHHHHHHHHHHHH-hCC--HHHhHHHHHHHHHHHhcCccCCCc-----ccHHHHHHHHHh-c
Confidence 3444445 45567898889999999999998 333 78899999999999874220 111 122445544443 3
Q ss_pred cCCCchhhhHHHHHHHHHHHHHHHhCcccccCCCCCCCcHHHHHHHHHHH
Q psy4089 100 TDTSHSASLAHHAQILSYMFKLVETREVAAPLAPGVTDNVVYVQEFVART 149 (223)
Q Consensus 100 TDt~HksgF~~q~~iL~~Lf~lve~~~i~~pl~~~~~~n~~~v~~~l~~l 149 (223)
.|+.|. .+-+++++++.+..+++...-+ .+|-.++.+|+.+.
T Consensus 116 ~d~~~~----aR~~Vy~~lv~la~~~~~~~~i----~~~lk~~~~~lkew 157 (378)
T KOG2753|consen 116 VDKPTP----ARYQVYMSLVTLAASCKLIEYI----VPNLKQLDDWLKEW 157 (378)
T ss_pred cCCCch----HHHHHHHHHHHHHhhcceeeee----cccHHHHHHHHHhC
Confidence 466665 4556788888898888775544 24566777777663
No 30
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=23.91 E-value=3.2e+02 Score=20.59 Aligned_cols=39 Identities=18% Similarity=0.094 Sum_probs=35.7
Q ss_pred CchhHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHhc
Q psy4089 35 PQPQFKLVLDSIIWAFKHTMRNVADTGLMILHQLLVNVC 73 (223)
Q Consensus 35 p~~~fklvidsi~Wa~kHt~r~I~e~GL~il~~ll~n~~ 73 (223)
.++..+.++++|.=-++|+++.+.=.+|.++..+++|.+
T Consensus 31 ~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g 69 (115)
T cd00197 31 TNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCG 69 (115)
T ss_pred CCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHcc
Confidence 356678999999999999999999999999999999996
No 31
>PF06466 PCAF_N: PCAF (P300/CBP-associated factor) N-terminal domain; InterPro: IPR009464 This region is spliced out of Q92830 from SWISSPROT isoform 2. It is predicted to be of a mixed alpha/beta fold - though predominantly helical.; GO: 0004402 histone acetyltransferase activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=23.15 E-value=3.1e+02 Score=24.90 Aligned_cols=93 Identities=14% Similarity=0.185 Sum_probs=47.6
Q ss_pred chHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhHHhcCCCchhhhHHHHHHHHHHHHHHHhCcccccCCCC
Q psy4089 55 RNVADTGLMILHQLLVNVCHDAQSAAQSFYVTYFTEILTHVFSVVTDTSHSASLAHHAQILSYMFKLVETREVAAPLAPG 134 (223)
Q Consensus 55 r~I~e~GL~il~~ll~n~~~~~~~~~~~Fy~~yy~~il~~vf~VlTDt~HksgF~~q~~iL~~Lf~lve~~~i~~pl~~~ 134 (223)
++++|.-++-|+.++.-+.+ =|..+ .=-+|++-|-.+-+-=.+|++=+.--....|..||-.|
T Consensus 77 ~~~seeeinrLl~mv~Dven------------~~~~~-----~~eed~dtkqvy~yl~klLrKcIl~~~~pvie~plG~P 139 (252)
T PF06466_consen 77 KNKSEEEINRLLGMVVDVEN------------LFMCV-----HKEEDPDTKQVYFYLFKLLRKCILQMTKPVIEGPLGKP 139 (252)
T ss_pred ccCCHHHHHHHHHHHHHHHH------------HHHHH-----HhcCChhHHHHHHHHHHHHHHHHHhhCCCcccCCCCCC
Confidence 66777777777766644421 11111 12345555544443334555543333344566677555
Q ss_pred CCCcHHHHHHHHHHHHHhhCCCCCHHHHHHH
Q psy4089 135 VTDNVVYVQEFVARTLKSAFPHLTENQIKVT 165 (223)
Q Consensus 135 ~~~n~~~v~~~l~~lL~~~Fp~l~~~qi~~F 165 (223)
|.... =|...+.|.+...|+|+.+.+.+..
T Consensus 140 PFE~P-sI~k~V~nfv~~kf~~l~~~E~q~m 169 (252)
T PF06466_consen 140 PFEKP-SIEKAVTNFVLYKFSHLPQKEWQTM 169 (252)
T ss_pred CCCCc-cHHHHHHHHHHHHccCCCcHHHHHH
Confidence 52111 1445555555567888876665553
No 32
>TIGR01673 holin_LLH phage holin, LL-H family. This model represents a putative phage holin from a number of phage and prophage regions of Gram-positive bacteria. Like other holins, it is small (about 100 amino acids) with stretches of hydrophobic sequence and is encoded adjacent to lytic enzymes.
Probab=23.10 E-value=1.7e+02 Score=23.01 Aligned_cols=34 Identities=15% Similarity=0.358 Sum_probs=26.8
Q ss_pred CcHHHHHHHHHHHHHh-hCCCCCHHHHHHHHHHHh
Q psy4089 137 DNVVYVQEFVARTLKS-AFPHLTENQIKVTVQGMF 170 (223)
Q Consensus 137 ~n~~~v~~~l~~lL~~-~Fp~l~~~qi~~FV~~lf 170 (223)
.-..+..+++.+.|.+ -||++++.||+.+|..-.
T Consensus 67 ~K~~~A~~~v~~~L~~~~i~~~t~~~i~~~IE~aV 101 (108)
T TIGR01673 67 EKLEQAFNYITEELKKAHIPKPSDAQIEGAIEAAV 101 (108)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 3344788888888874 799999999999997543
No 33
>PF02197 RIIa: Regulatory subunit of type II PKA R-subunit; InterPro: IPR003117 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. In the absence of cAMP, Protein Kinase A (PKA) exists as an equimolar tetramer of regulatory (R) and catalytic (C) subunits []. In addition to its role as an inhibitor of the C subunit, the R subunit anchors the holoenzyme to specific intracellular locations and prevents the C subunit from entering the nucleus. All R subunits have a conserved domain structure consisting of the N-terminal dimerization domain, inhibitory region, cAMP-binding domain A and cAMP-binding domain B. R subunits interact with C subunits primarily through the inhibitory site. The cAMP-binding domains show extensive sequence similarity and bind cAMP cooperatively. Two types of regulatory (R) subunits exist - types I and I - which differ in molecular weight, sequence, autophosphorylation cabaility, cellular location and tissue distribution. Types I and II were further sub-divided into alpha and beta subtypes, based mainly on sequence similarity. This entry represents types I-alpha, I-beta, II-alpha and II-beta regulatory subunits of PKA proteins. These subunits contain the dimerisation interface and binding site for A-kinase-anchoring proteins (AKAPs).; GO: 0008603 cAMP-dependent protein kinase regulator activity, 0007165 signal transduction; PDB: 2IZY_E 1R2A_A 1L6E_A 2IZX_B 2KYG_A 2EZW_B 3IM4_B 3IM3_A 4F9K_C 2HWN_B ....
Probab=22.85 E-value=1.5e+02 Score=18.80 Aligned_cols=30 Identities=17% Similarity=0.361 Sum_probs=18.2
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHH
Q psy4089 64 ILHQLLVNVCHDAQSAAQSFYVTYFTEILT 93 (223)
Q Consensus 64 il~~ll~n~~~~~~~~~~~Fy~~yy~~il~ 93 (223)
+|.++...+-...|+-.-+|+..||..+.+
T Consensus 6 lL~~~~~~vl~~qP~Di~~F~a~yF~~L~~ 35 (38)
T PF02197_consen 6 LLKEFTREVLREQPDDILQFAADYFEKLEK 35 (38)
T ss_dssp HHHHHHHHHHHH--S-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 455666666433346677899999966654
No 34
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=22.72 E-value=1.2e+02 Score=19.92 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=19.6
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHH
Q psy4089 147 ARTLKSAFPHLTENQIKVTVQGM 169 (223)
Q Consensus 147 ~~lL~~~Fp~l~~~qi~~FV~~l 169 (223)
.++|...||+-.++-++..++++
T Consensus 5 idiL~rvFP~~kr~~Le~iL~~C 27 (39)
T PF03474_consen 5 IDILTRVFPHQKRSVLELILQRC 27 (39)
T ss_pred HHHHHHHCCCCChHHHHHHHHHc
Confidence 36788999999999999988874
No 35
>KOG0151|consensus
Probab=22.55 E-value=2.3e+02 Score=29.75 Aligned_cols=76 Identities=18% Similarity=0.228 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhCCCCchH--HHHH-----------------HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhHHhc
Q psy4089 40 KLVLDSIIWAFKHTMRNV--ADTG-----------------LMILHQLLVNVCHDAQSAAQSFYVTYFTEILTHVFSVVT 100 (223)
Q Consensus 40 klvidsi~Wa~kHt~r~I--~e~G-----------------L~il~~ll~n~~~~~~~~~~~Fy~~yy~~il~~vf~VlT 100 (223)
..+=|+++||+.|-+--. .|.= |-++.++|.|... . ..--.+|+..|-..|.+||.-+-
T Consensus 448 ~sIg~aM~FalenA~aa~EI~eci~eSlt~~~t~~~kKiarLyLvsDIL~N~sa-r-v~nas~YR~~FEa~L~~Ifd~l~ 525 (877)
T KOG0151|consen 448 SSIGDAMVFALENADAAGEIVECITESLTNKETPLPKKIARLYLVSDILHNSSA-R-VANASAYRKSFEATLEDIFDDLN 525 (877)
T ss_pred chHHHHHHHHHhhhhhHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhhhhh-h-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 457789999999876533 2211 2223444544432 1 22345899999999999999999
Q ss_pred CCCchhhhHHHHHHHHH
Q psy4089 101 DTSHSASLAHHAQILSY 117 (223)
Q Consensus 101 Dt~HksgF~~q~~iL~~ 117 (223)
|..|.-|=..++..+..
T Consensus 526 ~~yr~I~gRIkaE~fkq 542 (877)
T KOG0151|consen 526 DLYRSIGGRIKAEAFKQ 542 (877)
T ss_pred HHHHhccchhhHHHHHH
Confidence 99988777777776654
No 36
>cd01040 globin Globins are heme proteins, which bind and transport oxygen. This family summarizes a diverse set of homologous protein domains, including: (1) tetrameric vertebrate hemoglobins, which are the major protein component of erythrocytes and transport oxygen in the bloodstream, (2) microorganismal flavohemoglobins, which are linked to C-terminal FAD-dependend reductase domains, (3) homodimeric bacterial hemoglobins, such as from Vitreoscilla, (4) plant leghemoglobins (symbiotic hemoglobins, involved in nitrogen metabolism in plant rhizomes), (5) plant non-symbiotic hexacoordinate globins and hexacoordinate globins from bacteria and animals, such as neuroglobin, (6) invertebrate hemoglobins, which may occur in tandem-repeat arrangements, and (7) monomeric myoglobins found in animal muscle tissue.
Probab=22.26 E-value=3.3e+02 Score=20.35 Aligned_cols=12 Identities=42% Similarity=0.650 Sum_probs=8.3
Q ss_pred cccChhhhHHHH
Q psy4089 6 FEEYPEHRTNFF 17 (223)
Q Consensus 6 f~~yPEhR~~Ff 17 (223)
|+.||+.|.-|-
T Consensus 31 f~~~P~~~~~F~ 42 (140)
T cd01040 31 FKAHPETRALFS 42 (140)
T ss_pred HHHChhHHHHhH
Confidence 677888875443
No 37
>KOG2023|consensus
Probab=22.05 E-value=1.6e+02 Score=30.82 Aligned_cols=43 Identities=30% Similarity=0.486 Sum_probs=34.8
Q ss_pred cChhhhHHHHHHHHHHHhcchhhhh------------cCCchhHHHHHHHHHHHhC
Q psy4089 8 EYPEHRTNFFLLLQAVNLHCFPAFL------------LIPQPQFKLVLDSIIWAFK 51 (223)
Q Consensus 8 ~yPEhR~~Ff~LL~ai~~~cF~all------------~lp~~~fklvidsi~Wa~k 51 (223)
+=||-|..=|.||.-++..||+-.. +++|+ +-.+..--+||++
T Consensus 674 ~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~-~isv~nNA~WAiG 728 (885)
T KOG2023|consen 674 EVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPE-NISVCNNAIWAIG 728 (885)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChh-hchHHHHHHHHHH
Confidence 5699999999999999999998442 56666 4567777789987
No 38
>PRK02877 hypothetical protein; Provisional
Probab=21.42 E-value=1.4e+02 Score=23.44 Aligned_cols=34 Identities=21% Similarity=0.370 Sum_probs=20.9
Q ss_pred HHHHHHhHhhhhccCCCCc---hhcHHHHHHHHHHHH
Q psy4089 181 EHLRDFLVQIREFTGEDDS---DLFLDEIEQTLKQAQ 214 (223)
Q Consensus 181 ~~lrDFLIqiKEf~g~d~~---dL~~eEre~~~~~~~ 214 (223)
+-+||++-.+|-.-|+... ++..+-|++++++-.
T Consensus 30 n~~kd~~a~l~~i~GG~~~~Y~~~l~~aR~~A~~rm~ 66 (106)
T PRK02877 30 NIFRDFFAGIRDIVGGRSGAYEKELRKAREIAFEELG 66 (106)
T ss_pred chHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHH
Confidence 4588999999997775542 244444555544433
No 39
>PF01480 PWI: PWI domain; InterPro: IPR002483 The PWI domain, named after a highly conserved PWI tri-peptide located within its N-terminal region, is a ~80 amino acid module, which is found either at the N terminus or at the C terminus of eukaryotic proteins involved in pre-mRNA processing []. It is generally found in association with other domains such as RRM and RS. The PWI domain is a RNA/DNA-binding domain that has an equal preference for single- and double-stranded nucleic acids and is likely to have multiple important functions in pre-mRNA processing []. Proteins containing this domain include the SR-related nuclear matrix protein of 160kDa (SRm160) splicing and 3'-end cleavage-stimulatory factor, and the mammalian splicing factor PRP3. The PWI domain is a soluble, globular and independently folded domain which consists of a four-helix bundle, with structured N- and C-terminal elements [].; GO: 0006397 mRNA processing; PDB: 1MP1_A 1X4Q_A.
Probab=21.38 E-value=1.2e+02 Score=21.88 Aligned_cols=44 Identities=16% Similarity=0.418 Sum_probs=22.2
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCC-----ChhHHHHHHHHHh
Q psy4089 143 QEFVARTLKSAFPHLTENQIKVTVQGMFDFNN-----DLPAFKEHLRDFL 187 (223)
Q Consensus 143 ~~~l~~lL~~~Fp~l~~~qi~~FV~~lf~~~~-----d~~~Fk~~lrDFL 187 (223)
+-||...+..-.+ ..++-+..||.++..... ++......|.+||
T Consensus 5 k~WI~~kl~e~lG-~edd~lvdyI~~~l~~~~~~~~~~~~~l~~~L~~fL 53 (77)
T PF01480_consen 5 KPWISKKLEEILG-FEDDVLVDYIVALLKSHKSSNEPDPKELQEQLEDFL 53 (77)
T ss_dssp HHHHHHHHHHHHS-S--CHHHHHHHHHCCTT--SSS--HHHHHHHHTTTT
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccccccHHHHHHHHHHHH
Confidence 3344444433323 245667777777776554 5666666666654
No 40
>KOG1319|consensus
Probab=21.37 E-value=1.2e+02 Score=26.80 Aligned_cols=43 Identities=19% Similarity=0.308 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhcchhhhhc-CCchhHHHHHHHHH-HHhCCCCchH
Q psy4089 15 NFFLLLQAVNLHCFPAFLL-IPQPQFKLVLDSII-WAFKHTMRNV 57 (223)
Q Consensus 15 ~Ff~LL~ai~~~cF~all~-lp~~~fklvidsi~-Wa~kHt~r~I 57 (223)
-=|+++++|-..||.+|-. +|-+.|+.+--+|+ |---|+-+-+
T Consensus 167 ~kf~vfQ~imd~~F~sF~~~i~~~~f~~lT~~i~sWvEehckp~~ 211 (229)
T KOG1319|consen 167 VKFNVFQGIMDSLFQSFNASISVASFQELTACVFSWIEEHCKPQT 211 (229)
T ss_pred HHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhCCccc
Confidence 3589999999999999987 89999999888665 8877777654
No 41
>PHA02819 hypothetical protein; Provisional
Probab=21.25 E-value=2.2e+02 Score=21.02 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=19.7
Q ss_pred HHHHHHhHHhcCCCchh----hhHHHHHHHH
Q psy4089 90 EILTHVFSVVTDTSHSA----SLAHHAQILS 116 (223)
Q Consensus 90 ~il~~vf~VlTDt~Hks----gF~~q~~iL~ 116 (223)
..+.=|=+|+||.++++ |+.-+-.|+.
T Consensus 22 nFI~VVksVLtd~s~~~~~~~~~~~~~~ii~ 52 (71)
T PHA02819 22 NFINVVKSVLNNENYNKKTKKSFLRYYLIIG 52 (71)
T ss_pred HHHHHHHHHHcCCCCcccccCChhHHHHHHH
Confidence 44666778999988877 6766666665
No 42
>cd07357 HN_L-whirlin_R2_like Second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains. This subgroup contains the second of two harmonin_N_like domains found in the long isoform of whirlin, and related domains. Whirlin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds various components of the Usher protein network of the inner ear and the retina: erythrocyte protein p55, usherin, VlGR1, and myosin XVa. The long isoform of whirlin contains two harmonin_N_like domains, and three PDZ protein-binding domains, PDZ1-3. The short whirlin isoform, derived from an alternative start ATG, lacks the first harmonin_N_like domain but has in common with the long isoform, this second harmonin_N_like domain (designated repeat 2, included in this subgroup) and PDZ3. This second harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=20.89 E-value=71 Score=24.16 Aligned_cols=30 Identities=23% Similarity=0.584 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCChhHHH
Q psy4089 141 YVQEFVARTLKSAFPHLTENQIKVTVQGMFDFNNDLPAFK 180 (223)
Q Consensus 141 ~v~~~l~~lL~~~Fp~l~~~qi~~FV~~lf~~~~d~~~Fk 180 (223)
|+.+|..+ |++ |+.||..||++-+.+++|.
T Consensus 27 yl~eY~~~-------~~t---VealV~aL~elLnt~~K~s 56 (81)
T cd07357 27 YLDEYRSG-------HIS---VDALVMALFELLNTHEKFS 56 (81)
T ss_pred HHHHHHcC-------CCC---HHHHHHHHHHHhccHHHHH
Confidence 66666554 444 8999999999999999975
No 43
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=20.65 E-value=3.3e+02 Score=23.48 Aligned_cols=63 Identities=19% Similarity=0.135 Sum_probs=39.3
Q ss_pred HHhcchhhhhcC-CchhHHHHHHHHHH----HhCCCCchHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Q psy4089 23 VNLHCFPAFLLI-PQPQFKLVLDSIIW----AFKHTMRNVADTGLMILHQLLVNVCHDAQSAAQSFYVT 86 (223)
Q Consensus 23 i~~~cF~all~l-p~~~fklvidsi~W----a~kHt~r~I~e~GL~il~~ll~n~~~~~~~~~~~Fy~~ 86 (223)
+...++.-++.- .++...-++--++| |..+.+++|-..+|+++..|+..-..-+ +.-..||++
T Consensus 57 lA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG-~aLvPyyrq 124 (183)
T PF10274_consen 57 LARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG-EALVPYYRQ 124 (183)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHH
Confidence 334444455544 56666666665665 5568899999999999998864432222 445555544
Done!