Query psy4089
Match_columns 223
No_of_seqs 108 out of 170
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 16:35:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4089.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4089hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w9c_A CRM1 protein, exportin 100.0 9.4E-78 3.2E-82 545.8 22.6 194 1-195 127-321 (321)
2 3gjx_A Exportin-1; transport, 100.0 9.5E-71 3.2E-75 562.1 26.3 221 1-222 835-1056(1073)
3 4hat_C Exportin-1; heat repeat 100.0 4.3E-65 1.5E-69 517.9 22.7 209 1-209 809-1023(1023)
4 3m1i_C Exportin-1; heat repeat 100.0 4.6E-50 1.6E-54 403.1 20.7 221 1-222 809-1036(1049)
5 2x19_B Importin-13; nuclear tr 99.9 7.7E-24 2.6E-28 208.4 17.2 178 1-197 778-958 (963)
6 2x1g_F Cadmus; transport prote 99.5 9E-13 3.1E-17 130.5 19.1 172 5-195 794-968 (971)
7 3ibv_A Exportin-T; karyopherin 93.1 0.47 1.6E-05 48.1 10.6 160 8-191 805-976 (980)
8 4fdd_A Transportin-1; heat rep 83.4 24 0.00082 33.9 14.3 101 8-120 641-742 (852)
9 2qk2_A LP04448P; mini spindles 55.6 34 0.0011 27.5 7.0 79 10-104 112-190 (242)
10 2wtg_A Globin-like protein; me 41.9 53 0.0018 25.9 6.0 22 33-54 105-126 (159)
11 2qk1_A Protein STU2; STU2P, XM 41.7 1.5E+02 0.005 24.4 9.3 105 10-124 118-224 (249)
12 4adn_A FAR1; antibiotic resist 37.1 1.1E+02 0.0037 26.0 7.4 39 141-180 44-82 (222)
13 3n1e_A Vacuolar protein sortin 36.1 1.5E+02 0.0051 23.3 7.6 44 141-190 56-99 (141)
14 2x19_B Importin-13; nuclear tr 31.3 3.6E+02 0.012 25.9 11.4 103 10-121 699-807 (963)
15 1b0b_A Hemoglobin; hemoprotein 31.1 59 0.002 24.3 4.4 38 32-71 99-136 (142)
16 2of3_A ZYG-9; multifunctional 30.4 1.3E+02 0.0043 25.9 6.9 35 40-74 86-120 (266)
17 4flb_A Regulation of nuclear P 29.9 1.7E+02 0.0058 21.7 7.3 38 83-127 78-115 (132)
18 1wgl_A TOLL-interacting protei 28.6 94 0.0032 20.8 4.6 27 148-177 14-40 (59)
19 2d5u_A N-glycanase 1; pngase, 28.5 47 0.0016 25.6 3.4 31 45-75 20-50 (124)
20 2r80_A Hemoglobin subunit alph 28.4 60 0.0021 24.5 4.0 21 32-52 91-111 (141)
21 1sz9_A PCF11 protein; RNA poly 28.2 37 0.0013 26.5 2.8 57 8-71 55-111 (144)
22 1x4q_A U4/U6 small nuclear rib 27.1 86 0.0029 22.8 4.5 65 140-213 16-80 (92)
23 1qgr_A Protein (importin beta 26.8 3.6E+02 0.012 25.1 9.9 84 8-103 576-662 (876)
24 3a6p_A Exportin-5; exportin-5, 26.5 3.7E+02 0.013 27.4 10.6 116 53-192 1039-1159(1204)
25 2o3l_A Hypothetical protein; s 23.1 2E+02 0.0068 20.7 5.8 42 84-126 17-58 (85)
26 2dhy_A CUE domain-containing p 22.1 84 0.0029 21.7 3.4 20 149-168 24-43 (67)
27 4g3o_A E3 ubiquitin-protein li 22.0 62 0.0021 22.0 2.6 19 146-164 20-38 (58)
28 1u6g_C TIP120 protein, CAND1; 22.0 6E+02 0.02 25.3 12.0 103 9-123 61-163 (1230)
29 1otr_A Protein CUE2; protein-p 21.9 87 0.003 20.3 3.3 21 148-168 9-29 (49)
30 1p3q_Q VPS9P, vacuolar protein 21.6 1.2E+02 0.0041 20.2 3.9 21 147-167 16-36 (54)
31 3ibv_A Exportin-T; karyopherin 21.4 6.2E+02 0.021 25.3 11.1 90 8-98 289-390 (980)
32 2o4t_A BH3976 protein; LEFT-ha 21.1 2.2E+02 0.0075 21.1 5.8 42 84-126 14-55 (100)
33 2qk2_A LP04448P; mini spindles 20.7 3.1E+02 0.011 21.5 15.6 83 10-104 29-112 (242)
34 1out_A Hemoglobin I; heme, oxy 20.4 74 0.0025 24.1 3.2 30 26-55 42-77 (143)
35 3bom_B Hemoglobin subunit beta 20.4 55 0.0019 25.0 2.4 29 27-55 41-80 (147)
No 1
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=100.00 E-value=9.4e-78 Score=545.82 Aligned_cols=194 Identities=71% Similarity=1.145 Sum_probs=189.2
Q ss_pred CcccccccChhhhHHHHHHHHHHHhcchhhhhcCCchhHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHhcccchHHH
Q psy4089 1 MINKDFEEYPEHRTNFFLLLQAVNLHCFPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADTGLMILHQLLVNVCHDAQSAA 80 (223)
Q Consensus 1 MI~kdf~~yPEhR~~Ff~LL~ai~~~cF~all~lp~~~fklvidsi~Wa~kHt~r~I~e~GL~il~~ll~n~~~~~~~~~ 80 (223)
||||||++|||||++||+||+|||.|||++|+++||++||++||||+||||||||||+|+||++|.++++|+++.+ +++
T Consensus 127 MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~~-~~~ 205 (321)
T 1w9c_A 127 MINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEE-AAA 205 (321)
T ss_dssp HHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCH-HHH
T ss_pred HHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCh-HHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998644 899
Q ss_pred HHHHHHHHHHHHHHHhHHhcCCCchhhhHHHHHHHHHHHHHHHhCcccccCCCC-CCCcHHHHHHHHHHHHHhhCCCCCH
Q psy4089 81 QSFYVTYFTEILTHVFSVVTDTSHSASLAHHAQILSYMFKLVETREVAAPLAPG-VTDNVVYVQEFVARTLKSAFPHLTE 159 (223)
Q Consensus 81 ~~Fy~~yy~~il~~vf~VlTDt~HksgF~~q~~iL~~Lf~lve~~~i~~pl~~~-~~~n~~~v~~~l~~lL~~~Fp~l~~ 159 (223)
++||++||++|+++||+|+|||+|||||++||+||++||++||+|+|++|||++ |.+|.+||++|++++|+++||||++
T Consensus 206 ~~Fy~~fy~~il~~if~VlTDs~Hk~gF~~q~~iL~~lf~~ve~~~i~~pl~~~~~~~n~~~v~~~l~~lL~~~Fp~l~~ 285 (321)
T 1w9c_A 206 QSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEEGKISTSLNPGNPVNNQIFLQEYVANLLKSAFPHLQD 285 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHHHHTTCCCSCSCSSSCCCHHHHHHHHHHHHHHHHCTTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHhCchhhccHHHHHHHHHHHHHHHHcCccccccCCCCCcccHHHHHHHHHHHHHHhCCCCCH
Confidence 999999999999999999999999999999999999999999999999999985 4578999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHhHhhhhccC
Q psy4089 160 NQIKVTVQGMFDFNNDLPAFKEHLRDFLVQIREFTG 195 (223)
Q Consensus 160 ~qi~~FV~~lf~~~~d~~~Fk~~lrDFLIqiKEf~g 195 (223)
+||++||.|||++++|+++||+||||||||+|||+|
T Consensus 286 ~qi~~fv~glf~~~~d~~~Fk~~lrDFLIqiKEf~g 321 (321)
T 1w9c_A 286 AQVKLFVTGLFSLNQDIPAFKEHLRDFLVQIKEFAG 321 (321)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999987
No 2
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=100.00 E-value=9.5e-71 Score=562.11 Aligned_cols=221 Identities=69% Similarity=1.116 Sum_probs=214.5
Q ss_pred CcccccccChhhhHHHHHHHHHHHhcchhhhhcCCchhHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHhcccchHHH
Q psy4089 1 MINKDFEEYPEHRTNFFLLLQAVNLHCFPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADTGLMILHQLLVNVCHDAQSAA 80 (223)
Q Consensus 1 MI~kdf~~yPEhR~~Ff~LL~ai~~~cF~all~lp~~~fklvidsi~Wa~kHt~r~I~e~GL~il~~ll~n~~~~~~~~~ 80 (223)
||++||++|||||++||+||+++|+|||++|+++|+++||+|||||+|||||++|+|+|+||+++.++++|+.+.+ +++
T Consensus 835 mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~~~~~~-~~~ 913 (1073)
T 3gjx_A 835 MINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEE-AAA 913 (1073)
T ss_dssp HHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHTTCH-HHH
T ss_pred HHhCCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHhhcCh-HHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998654 799
Q ss_pred HHHHHHHHHHHHHHHhHHhcCCCchhhhHHHHHHHHHHHHHHHhCcccccCCCC-CCCcHHHHHHHHHHHHHhhCCCCCH
Q psy4089 81 QSFYVTYFTEILTHVFSVVTDTSHSASLAHHAQILSYMFKLVETREVAAPLAPG-VTDNVVYVQEFVARTLKSAFPHLTE 159 (223)
Q Consensus 81 ~~Fy~~yy~~il~~vf~VlTDt~HksgF~~q~~iL~~Lf~lve~~~i~~pl~~~-~~~n~~~v~~~l~~lL~~~Fp~l~~ 159 (223)
++||++||++|+++||+|+||++|||||++||+||++||.+|++|+|++||++. +++|.+||++|++++|+++|||+++
T Consensus 914 ~~F~~~~~~~~~~~i~~v~td~~h~~~f~~q~~il~~l~~~~~~~~i~~~l~~~~~~~n~~~~~~~~~~~l~~~fp~~~~ 993 (1073)
T 3gjx_A 914 QSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEEGKISTPLNPGNPVNNQMFIQDYVANLLKSAFPHLQD 993 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTCGGGHHHHHHHHHHHHHHHTTTCCSCSSSCTTTTCHHHHHHHHHHHHHHHHCTTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHhCchHhhhhhHHHHHHHHHHHHHHcCCccccccccCCCccHHHHHHHHHHHHHHhCCCCCH
Confidence 999999999999999999999999999999999999999999999999999963 4579999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHhHhhhhccCCCCchhcHHHHHHHHHHHHHHHHHhhc
Q psy4089 160 NQIKVTVQGMFDFNNDLPAFKEHLRDFLVQIREFTGEDDSDLFLDEIEQTLKQAQEKKRQTQL 222 (223)
Q Consensus 160 ~qi~~FV~~lf~~~~d~~~Fk~~lrDFLIqiKEf~g~d~~dL~~eEre~~~~~~~~~~~~~~~ 222 (223)
+||+.||.|||+.++|+.+||+||||||||+|||+|+|++|||+||||+++++|++++|++++
T Consensus 994 ~qi~~fv~~l~~~~~d~~~f~~~lrDFli~~ke~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 1056 (1073)
T 3gjx_A 994 AQVKLFVTGLFSLNQDIPAFKEHLRDFLVQIKEFAGEDTSDLFLEERETALRQAQEEKHKLQM 1056 (1073)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHTSCCTTTCCTTCTTHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCCcHHHhHHHHHHHHHHHHHHHHhHHh
Confidence 999999999999999999999999999999999999999999999999999999999999875
No 3
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=100.00 E-value=4.3e-65 Score=517.91 Aligned_cols=209 Identities=40% Similarity=0.662 Sum_probs=195.0
Q ss_pred CcccccccChhhhHHHHHHHHHHHhcchhhhhcCCchhHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHhccc-chHH
Q psy4089 1 MINKDFEEYPEHRTNFFLLLQAVNLHCFPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADTGLMILHQLLVNVCHD-AQSA 79 (223)
Q Consensus 1 MI~kdf~~yPEhR~~Ff~LL~ai~~~cF~all~lp~~~fklvidsi~Wa~kHt~r~I~e~GL~il~~ll~n~~~~-~~~~ 79 (223)
||++||++|||||++||+||+++|++||++|+++|+++||++||||+||+||++|+|+++||+++.++++|+.+. ++++
T Consensus 809 mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~~~~~~ 888 (1023)
T 4hat_C 809 MINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNVPF 888 (1023)
T ss_dssp HHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHCSSHH
T ss_pred HHhcccccChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCChHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999853 2479
Q ss_pred HHHHHHHHHHHHHHHHhHHhcCCCchhhhHHHHHHHHHHHHHHHhCcccccCCCC-----CCCcHHHHHHHHHHHHHhhC
Q psy4089 80 AQSFYVTYFTEILTHVFSVVTDTSHSASLAHHAQILSYMFKLVETREVAAPLAPG-----VTDNVVYVQEFVARTLKSAF 154 (223)
Q Consensus 80 ~~~Fy~~yy~~il~~vf~VlTDt~HksgF~~q~~iL~~Lf~lve~~~i~~pl~~~-----~~~n~~~v~~~l~~lL~~~F 154 (223)
+++||++||++|+++||+|+||++|||||++||+||++||.+|++|+|++|||++ +.+|.+||++|++++|+++|
T Consensus 889 ~~~f~~~~~~~~~~~~~~v~td~~h~~~f~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~f 968 (1023)
T 4hat_C 889 ANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQALLLMKLISLVYDNKISVPLYQEAEVPQGTSNQVYLSQYLANMLSNAF 968 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSCGGGHHHHHHHHHHHHHHHHTTCCCSCSSCTTSSCTTCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHHHHHHcCCcccccCCccccCCCCchHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999983 26888999999999999999
Q ss_pred CCCCHHHHHHHHHHHhhcCCChhHHHHHHHHHhHhhhhccCCCCchhcHHHHHHH
Q psy4089 155 PHLTENQIKVTVQGMFDFNNDLPAFKEHLRDFLVQIREFTGEDDSDLFLDEIEQT 209 (223)
Q Consensus 155 p~l~~~qi~~FV~~lf~~~~d~~~Fk~~lrDFLIqiKEf~g~d~~dL~~eEre~~ 209 (223)
||++++||+.||.|||+.++|+.+||+||||||||+|||+|++++|||+||||++
T Consensus 969 p~~~~~qi~~fv~~l~~~~~~~~~f~~~lrdfli~~ke~~~~~~~~~~~~~~~~~ 1023 (1023)
T 4hat_C 969 PHLTSEQIASFLSALTKQCKDLVVFKGTLRDFLVQIKEVGGDPTDYLFAEDKENA 1023 (1023)
T ss_dssp TTSCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHTTSSSCCGGGGGCC------
T ss_pred CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHhHHhHhhcCCChHHHhHHhhhcC
Confidence 9999999999999999999999999999999999999999966557999999874
No 4
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=100.00 E-value=4.6e-50 Score=403.10 Aligned_cols=221 Identities=40% Similarity=0.664 Sum_probs=198.7
Q ss_pred CcccccccChhhhHHHHHHHHHHHhcchhhhhcCCchhHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHhcc-cchHH
Q psy4089 1 MINKDFEEYPEHRTNFFLLLQAVNLHCFPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADTGLMILHQLLVNVCH-DAQSA 79 (223)
Q Consensus 1 MI~kdf~~yPEhR~~Ff~LL~ai~~~cF~all~lp~~~fklvidsi~Wa~kHt~r~I~e~GL~il~~ll~n~~~-~~~~~ 79 (223)
||++|++++||||..||.||.+++.+||+.++.+||++++.++++++||++|++|++...||+++.+++++... .+++.
T Consensus 809 ~i~~~~~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~ 888 (1049)
T 3m1i_C 809 MINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNVPF 888 (1049)
T ss_dssp HHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHHSCHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHSCSCHH
T ss_pred HHhcchhhCHHHHHHHHHHHHHHHHhCHHHHHcCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHhcCChHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999874 23378
Q ss_pred HHHHHHHHHHHHHHHHhHHhcCCCchhhhHHHHHHHHHHHHHHHhCcccccCCCC---C--CCcHHHHHHHHHHHHHhhC
Q psy4089 80 AQSFYVTYFTEILTHVFSVVTDTSHSASLAHHAQILSYMFKLVETREVAAPLAPG---V--TDNVVYVQEFVARTLKSAF 154 (223)
Q Consensus 80 ~~~Fy~~yy~~il~~vf~VlTDt~HksgF~~q~~iL~~Lf~lve~~~i~~pl~~~---~--~~n~~~v~~~l~~lL~~~F 154 (223)
+++||++||.+|++++|+|+||++|||||+.||.+|++||.++++|+|++|+|++ | .+|..|+++|++++|.++|
T Consensus 889 ~~~f~~~~~~~l~~~~~~~l~~~~h~s~~~~~~~~l~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 968 (1049)
T 3m1i_C 889 ANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQALLLMKLISLVYDNKISVPLYQEAEVPQGTSNQVYLSQYLANMLSNAF 968 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHHHHTTCCCSCSSCGGGSSTTCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHhhhHHHHHHHHHHHHHHHhcCcccccccCccccCCCCCcHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999873 2 3688899999999999999
Q ss_pred CCCCHHHHHHHHHHHhhcCCChhHHHHHHHHHhHhhhhccCCCCch-hcHHHHHHHHHHHHHHHHHhhc
Q psy4089 155 PHLTENQIKVTVQGMFDFNNDLPAFKEHLRDFLVQIREFTGEDDSD-LFLDEIEQTLKQAQEKKRQTQL 222 (223)
Q Consensus 155 p~l~~~qi~~FV~~lf~~~~d~~~Fk~~lrDFLIqiKEf~g~d~~d-L~~eEre~~~~~~~~~~~~~~~ 222 (223)
||++++|++.||.+||+.++|..+||++||||+|++|||+| |++| ||+||||+++++|++++|++++
T Consensus 969 ~~~~~~~~~~f~~~l~~~~~~~~~f~~~~rdf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1049)
T 3m1i_C 969 PHLTSEQIASFLSALTKQYKDLVVFKGTLRDFLVQIKEVGG-DPTDYLFAEDKENALMEQNRLEREKAA 1036 (1049)
T ss_dssp TTSCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTSSSC-CGGGGGGGGGTTTC-------------
T ss_pred CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHhHhhhhhcC-CchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999 8888 9999999999999999988764
No 5
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.91 E-value=7.7e-24 Score=208.40 Aligned_cols=178 Identities=17% Similarity=0.213 Sum_probs=156.5
Q ss_pred CcccccccChhhhHHHHHHHHHHHhcchhhhhcCCchhHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHhcccchHHH
Q psy4089 1 MINKDFEEYPEHRTNFFLLLQAVNLHCFPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADTGLMILHQLLVNVCHDAQSAA 80 (223)
Q Consensus 1 MI~kdf~~yPEhR~~Ff~LL~ai~~~cF~all~lp~~~fklvidsi~Wa~kHt~r~I~e~GL~il~~ll~n~~~~~~~~~ 80 (223)
||++|+.+|||+|..||.||.+++.+|+..+++ ++.+|+.++++++||++|++|++...|++.+.+++++... . +..
T Consensus 778 ~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~-~-~~~ 854 (963)
T 2x19_B 778 LFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLC-ERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGE-V-ESV 854 (963)
T ss_dssp HHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGC-TTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTS-S-CHH
T ss_pred HHhhCcccCchHHHHHHHHHHHHHHhCcHHHcC-CcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCC-h-HHH
Confidence 456789999999999999999999999999986 5556999999999999999999999999999999987652 2 578
Q ss_pred HHHHHHHHHHHHHHHhHHhcCCCchhhhHHHHHHHHHHHHHHHhCcccccCCCCCCCcHHHHHHHHHHHH-HhhCC--CC
Q psy4089 81 QSFYVTYFTEILTHVFSVVTDTSHSASLAHHAQILSYMFKLVETREVAAPLAPGVTDNVVYVQEFVARTL-KSAFP--HL 157 (223)
Q Consensus 81 ~~Fy~~yy~~il~~vf~VlTDt~HksgF~~q~~iL~~Lf~lve~~~i~~pl~~~~~~n~~~v~~~l~~lL-~~~Fp--~l 157 (223)
++|++.|+..|+..+|.+++|..|++++..++.+|..|+. . +..++++|+.++| .+.|| ++
T Consensus 855 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~il~~l~~---~-------------~~~~~~~~l~~~l~~~~~p~~~~ 918 (963)
T 2x19_B 855 GKVVQEDGRMLLIAVLEAIGGQASRSLMDCFADILFALNK---H-------------CFSLLSMWIKEALQPPGFPSARL 918 (963)
T ss_dssp HHHTTTSHHHHHHHHHHHHTTTSCGGGHHHHHHHHHHHHH---H-------------SHHHHHHHHHHHTCSTTSSCTTC
T ss_pred HHHHHHHHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHH---H-------------ChHHHHHHHHHHhcccCCCCCcC
Confidence 8999999999999999999999999999999999965432 1 3558899999999 57899 99
Q ss_pred CHHHHHHHHHHHhhcCCChhHHHHHHHHHhHhhhhccCCC
Q psy4089 158 TENQIKVTVQGMFDFNNDLPAFKEHLRDFLVQIREFTGED 197 (223)
Q Consensus 158 ~~~qi~~FV~~lf~~~~d~~~Fk~~lrDFLIqiKEf~g~d 197 (223)
+++|.+.|+.+|+....|..+||.++|||++++|+++|.+
T Consensus 919 ~~~~~~~f~~~l~~~~~~~~~f~~~l~~F~~~~r~~~~~~ 958 (963)
T 2x19_B 919 SPEQKDTFSQQILRERVNKRRVKEMVKEFTLLCRGLHGTD 958 (963)
T ss_dssp CHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHC-----
T ss_pred CHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHcCccCcc
Confidence 9999999999999887799999999999999999998854
No 6
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.49 E-value=9e-13 Score=130.47 Aligned_cols=172 Identities=10% Similarity=0.131 Sum_probs=147.3
Q ss_pred ccccChhhhHHHHHHHHHHHhcchhhhhcCCchhHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHhcccchHHHHHHH
Q psy4089 5 DFEEYPEHRTNFFLLLQAVNLHCFPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADTGLMILHQLLVNVCHDAQSAAQSFY 84 (223)
Q Consensus 5 df~~yPEhR~~Ff~LL~ai~~~cF~all~lp~~~fklvidsi~Wa~kHt~r~I~e~GL~il~~ll~n~~~~~~~~~~~Fy 84 (223)
++.+.||+|..||.|+..+..+|+..++. +|.++..++++.+||++|.+|++...+++.+..++..- ... +..++|.
T Consensus 794 ~~~~~pd~~~~~f~ll~~~l~~~p~~~~~-s~~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~~-~~~-~~~~~~~ 870 (971)
T 2x1g_F 794 NFSNISDTMETFFGCLTQIIKKIPQVLED-KTLAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQS-RNH-AHVTEVV 870 (971)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHSSGGGGGC-TTSCHHHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHH-TTC-HHHHHHH
T ss_pred CCccCchHHHHHHHHHHHHHHhCcHHHcC-CcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcC-Cch-HHHHHHH
Confidence 67789999999999999999999999876 44448999999999999999999999999999988762 223 6788999
Q ss_pred HHHHHHHHHHHhHHhcCCCchhhhHHHHHHHHHHHHHHHhCcccccCCCCCCCcHHHHHHHHHHHHH-hhCCC--CCHHH
Q psy4089 85 VTYFTEILTHVFSVVTDTSHSASLAHHAQILSYMFKLVETREVAAPLAPGVTDNVVYVQEFVARTLK-SAFPH--LTENQ 161 (223)
Q Consensus 85 ~~yy~~il~~vf~VlTDt~HksgF~~q~~iL~~Lf~lve~~~i~~pl~~~~~~n~~~v~~~l~~lL~-~~Fp~--l~~~q 161 (223)
.++...++..++..+++..+++.+...+.+|..|+..-- .-...|+.+.|. ..||+ +++++
T Consensus 871 ~~~g~~l~~~l~~~~~~~~~~s~~~~~a~~l~~l~~~~~----------------~~~~~~l~~~l~~~~~p~~~~~~~~ 934 (971)
T 2x1g_F 871 LATGEQTLYTAMMCVGYLTPRSQVDKFADILLAMNRKYA----------------AEMAVWMKSLMSTPNFPTQLITDAD 934 (971)
T ss_dssp HHHHHHHHHHHHHHHHTTSCGGGGGGGHHHHHHHHHHHH----------------HHHHHHHHHHHTSSSCSCSSSCHHH
T ss_pred HHhHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHHCc----------------HHHHHHHHHHhcccCCCCCcCCHHH
Confidence 999999999999999999999999999999999876532 134667877763 46886 89999
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHhHhhhhccC
Q psy4089 162 IKVTVQGMFDFNNDLPAFKEHLRDFLVQIREFTG 195 (223)
Q Consensus 162 i~~FV~~lf~~~~d~~~Fk~~lrDFLIqiKEf~g 195 (223)
.+.|+..|+....+..+||.++|||..+.|..+|
T Consensus 935 ~~~f~~~l~~~~~~~r~~~~~~~~f~~~~r~~~~ 968 (971)
T 2x1g_F 935 KTRYTALIIKEKVNKRLLQQHLSEMAMKTRGLTE 968 (971)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhChHhHHHHHHHHHHHHcCccc
Confidence 9999999998755799999999999999999877
No 7
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=93.14 E-value=0.47 Score=48.07 Aligned_cols=160 Identities=11% Similarity=0.181 Sum_probs=82.3
Q ss_pred cChhhhHHHHHHHHHHHhc-chhhhhcCC-chhHHHHHHHHH-HHhCCCCchHHHHHHHHHHHHHHHhcccchHHHHHHH
Q psy4089 8 EYPEHRTNFFLLLQAVNLH-CFPAFLLIP-QPQFKLVLDSII-WAFKHTMRNVADTGLMILHQLLVNVCHDAQSAAQSFY 84 (223)
Q Consensus 8 ~yPEhR~~Ff~LL~ai~~~-cF~all~lp-~~~fklvidsi~-Wa~kHt~r~I~e~GL~il~~ll~n~~~~~~~~~~~Fy 84 (223)
+=++-|..||.+|.+|.++ |-+.|++-+ ...|..++.+++ .|..|++..+.-+++.++..+++-..+.+ . -.=|
T Consensus 805 ~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~~~~~~~--~-~~gf 881 (980)
T 3ibv_A 805 KQNDLRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMVSLWGGKD--G-IAGF 881 (980)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHC----------CCH
T ss_pred HHHHHHHHHHHHHHHHHhCCchhhhcCCcchHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHCCCC--c-chHH
Confidence 3356789999999999985 455544332 367899999999 77889999999999999999987764322 1 2234
Q ss_pred HHHHHHHHHHHhHHhcCCCch-------hhhHHHHHHHHHHHHHHHhCcccccCCCCCCCcHHHHHHHHHHHHHhhCCC-
Q psy4089 85 VTYFTEILTHVFSVVTDTSHS-------ASLAHHAQILSYMFKLVETREVAAPLAPGVTDNVVYVQEFVARTLKSAFPH- 156 (223)
Q Consensus 85 ~~yy~~il~~vf~VlTDt~Hk-------sgF~~q~~iL~~Lf~lve~~~i~~pl~~~~~~n~~~v~~~l~~lL~~~Fp~- 156 (223)
.+|.++++--.|.+..++... .-+..=+.+|+.+..-- .. +|+.-|-.+-||+
T Consensus 882 ~~f~~~~~~~~f~~p~~~~f~~~Daq~~~~~~e~~~~~k~~~~~~---------------g~----~~~~~l~~~~lp~~ 942 (980)
T 3ibv_A 882 ENFTLSLTPLCFEMPVNPNFNTRDGQSLVVLGELAGLQKIILEKL---------------GD----IYKSYLVTVYFPTV 942 (980)
T ss_dssp HHHHHHHHHHHHHGGGC----------CHHHHHHHHHHHHHHHHH---------------HH----HHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhc---------------CH----HHHHHHHHhcCCcC
Confidence 556555666778888776631 11222233333221110 12 2333333345676
Q ss_pred -CCHHHHHHHHHHHhhcCCChhHHHHHHHHHhHhhh
Q psy4089 157 -LTENQIKVTVQGMFDFNNDLPAFKEHLRDFLVQIR 191 (223)
Q Consensus 157 -l~~~qi~~FV~~lf~~~~d~~~Fk~~lrDFLIqiK 191 (223)
++++.+..|+..| ...|...||.-+.+|.-++|
T Consensus 943 ~~~~~~~~~~~~~l--~~~~~k~f~~~~~~~~~~~~ 976 (980)
T 3ibv_A 943 NFPDVMASEYLQAL--SNLDSRSFKQFFQKFIQALK 976 (980)
T ss_dssp ---CCHHHHHHHC------------------CHHHH
T ss_pred CCCHHHHHHHHHHH--hccchhhHHHHHHHHHHHhh
Confidence 4677788999999 34589999999999988876
No 8
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=83.41 E-value=24 Score=33.94 Aligned_cols=101 Identities=13% Similarity=0.204 Sum_probs=74.5
Q ss_pred cChhhhHHHHHHHHHHHhcchhhhhcCCchhHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Q psy4089 8 EYPEHRTNFFLLLQAVNLHCFPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADTGLMILHQLLVNVCHDAQSAAQSFYVTY 87 (223)
Q Consensus 8 ~yPEhR~~Ff~LL~ai~~~cF~all~lp~~~fklvidsi~Wa~kHt~r~I~e~GL~il~~ll~n~~~~~~~~~~~Fy~~y 87 (223)
..|+.|...+.++.++...|...+... +..++..++-++.+..+++...+...+.++..++.. + ++.|
T Consensus 641 ~~~~vr~~a~~~l~~l~~~~~~~~~~~----l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~---~-----~~p~ 708 (852)
T 4fdd_A 641 KMPEVRQSSFALLGDLTKACFQHVKPC----IADFMPILGTNLNPEFISVCNNATWAIGEISIQMGI---E-----MQPY 708 (852)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGTGGG----HHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGG---G-----GGGG
T ss_pred CChhHHHHHHHHHHHHHHHhhHHHHHH----HHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhH---h-----HHHH
Confidence 458999999999999999998875543 556788888888999999999999988888888742 2 2356
Q ss_pred HHHHHHHHhHHhcCCC-chhhhHHHHHHHHHHHH
Q psy4089 88 FTEILTHVFSVVTDTS-HSASLAHHAQILSYMFK 120 (223)
Q Consensus 88 y~~il~~vf~VlTDt~-HksgF~~q~~iL~~Lf~ 120 (223)
.-.++..++.++.++. |++--..=+..+.+|..
T Consensus 709 ~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~ 742 (852)
T 4fdd_A 709 IPMVLHQLVEIINRPNTPKTLLENTAITIGRLGY 742 (852)
T ss_dssp THHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHH
Confidence 6677888888887765 44444444445555443
No 9
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=55.60 E-value=34 Score=27.45 Aligned_cols=79 Identities=10% Similarity=0.153 Sum_probs=52.7
Q ss_pred hhhhHHHHHHHHHHHhcchhhhhcCCchhHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Q psy4089 10 PEHRTNFFLLLQAVNLHCFPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADTGLMILHQLLVNVCHDAQSAAQSFYVTYFT 89 (223)
Q Consensus 10 PEhR~~Ff~LL~ai~~~cF~all~lp~~~fklvidsi~Wa~kHt~r~I~e~GL~il~~ll~n~~~~~~~~~~~Fy~~yy~ 89 (223)
|..|..=...|.++...+ .++.+++.+.=+++|..+.|-...+..+..++..... + .+...|+-
T Consensus 112 ~~vr~~a~~aL~~~~~~~----------~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~---~---~~~~~~l~ 175 (242)
T 2qk2_A 112 PNVVTALREAIDAIYAST----------SLEAQQESIVESLSNKNPSVKSETALFIARALTRTQP---T---ALNKKLLK 175 (242)
T ss_dssp HHHHHHHHHHHHHHHTTS----------CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCG---G---GCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC---C---CccHHHHH
Confidence 344555555555554422 2567888888888998888888888888777755421 1 23346777
Q ss_pred HHHHHHhHHhcCCCc
Q psy4089 90 EILTHVFSVVTDTSH 104 (223)
Q Consensus 90 ~il~~vf~VlTDt~H 104 (223)
.++..+...+.|+.-
T Consensus 176 ~l~p~l~~~l~D~~~ 190 (242)
T 2qk2_A 176 LLTTSLVKTLNEPDP 190 (242)
T ss_dssp HHHHHHHHHHTSSCH
T ss_pred HHHHHHHHHhcCCCh
Confidence 888888888888764
No 10
>2wtg_A Globin-like protein; metal-binding, oxygen transport; HET: HEM; 1.50A {Caenorhabditis elegans} PDB: 2wth_A*
Probab=41.92 E-value=53 Score=25.93 Aligned_cols=22 Identities=0% Similarity=-0.088 Sum_probs=18.6
Q ss_pred cCCchhHHHHHHHHHHHhCCCC
Q psy4089 33 LIPQPQFKLVLDSIIWAFKHTM 54 (223)
Q Consensus 33 ~lp~~~fklvidsi~Wa~kHt~ 54 (223)
.++|++|+.|-++++|++++.-
T Consensus 105 gV~~ehy~~v~~~Ll~~L~~~l 126 (159)
T 2wtg_A 105 KMDPALWMAFFTVFTGYLESVG 126 (159)
T ss_dssp CCCTTHHHHHHHHHHHHHTTTS
T ss_pred CCCHHHHHHHHHHHHHHHHHHc
Confidence 4788999999999999998764
No 11
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=41.69 E-value=1.5e+02 Score=24.41 Aligned_cols=105 Identities=13% Similarity=0.157 Sum_probs=66.0
Q ss_pred hhhhHHHHHHHHHHHhcchhhhhcCCchhHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH-
Q psy4089 10 PEHRTNFFLLLQAVNLHCFPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADTGLMILHQLLVNVCHDAQSAAQSFYVTYF- 88 (223)
Q Consensus 10 PEhR~~Ff~LL~ai~~~cF~all~lp~~~fklvidsi~Wa~kHt~r~I~e~GL~il~~ll~n~~~~~~~~~~~Fy~~yy- 88 (223)
|.-|..-...|.++..+|=+. .+...+..+++.++=+++|..+.|-+.+|..+..++......+..+. .|+
T Consensus 118 ~~V~~aa~~al~~i~~~~~~~---~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~-----~~l~ 189 (249)
T 2qk1_A 118 PSVIEAIRKALLTICKYYDPL---ASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQ-----RYLK 189 (249)
T ss_dssp HHHHHHHHHHHHHHHHHSCTT---CTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHH-----HHHT
T ss_pred HHHHHHHHHHHHHHHHHcccc---ccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHH-----HHHH
Confidence 334445555566666655331 11123556999999999999999999999999999976542111222 466
Q ss_pred HHHHHHHhHHhcCCCchhhhHHHHH-HHHHHHHHHHh
Q psy4089 89 TEILTHVFSVVTDTSHSASLAHHAQ-ILSYMFKLVET 124 (223)
Q Consensus 89 ~~il~~vf~VlTDt~HksgF~~q~~-iL~~Lf~lve~ 124 (223)
-.|+..+...+.|+ ++.-+..+. .|..+...+-+
T Consensus 190 ~~iip~l~~~l~D~--~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 190 DEVVPIVIQIVNDT--QPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp TTHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhCH
Confidence 68888888889888 344444442 34444444443
No 12
>4adn_A FAR1; antibiotic resistance; 1.65A {Staphylococcus aureus} PDB: 4ado_A
Probab=37.07 E-value=1.1e+02 Score=25.98 Aligned_cols=39 Identities=8% Similarity=0.175 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCChhHHH
Q psy4089 141 YVQEFVARTLKSAFPHLTENQIKVTVQGMFDFNNDLPAFK 180 (223)
Q Consensus 141 ~v~~~l~~lL~~~Fp~l~~~qi~~FV~~lf~~~~d~~~Fk 180 (223)
-|+.+..+.+...||+++++|- .++..+.+..-+..+|.
T Consensus 44 avk~~~~~kI~~~f~~~~~eq~-~lL~~i~~~~lt~~~~e 82 (222)
T 4adn_A 44 VIQSETYNDINEIFGHIDDDIE-ESLKVLMNIRLSNKEIE 82 (222)
T ss_dssp HHHHHHHHHHHTTCSSCCHHHH-HHHHHHTSTTCCHHHHH
T ss_pred HHHHHHHHHHHHHcccCCHHHH-HHHHHHhcccCCHHHHH
Confidence 6888999999999999998874 55777766642544443
No 13
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A
Probab=36.05 E-value=1.5e+02 Score=23.29 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCChhHHHHHHHHHhHhh
Q psy4089 141 YVQEFVARTLKSAFPHLTENQIKVTVQGMFDFNNDLPAFKEHLRDFLVQI 190 (223)
Q Consensus 141 ~v~~~l~~lL~~~Fp~l~~~qi~~FV~~lf~~~~d~~~Fk~~lrDFLIqi 190 (223)
-+...++.|=...-|+|.++||.......|+. ||..|++-+..+
T Consensus 56 tl~Ke~~kLH~~Ls~~LP~~~v~~Im~~Vf~~------fk~~l~~~~~~~ 99 (141)
T 3n1e_A 56 NICKQMTKMHEAIFDLLPEEQTQMLFLRINAS------YKLHLKKQLSHL 99 (141)
T ss_dssp HHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH------HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH------HHHHHHHHHHHc
Confidence 45566666666677999999999998888754 677777766555
No 14
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=31.28 E-value=3.6e+02 Score=25.89 Aligned_cols=103 Identities=12% Similarity=0.099 Sum_probs=58.4
Q ss_pred hhhhHHHHHHHHHHHhcchhhhhcCCchhHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Q psy4089 10 PEHRTNFFLLLQAVNLHCFPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADTGLMILHQLLVNVCHDAQSAAQSFYVTYFT 89 (223)
Q Consensus 10 PEhR~~Ff~LL~ai~~~cF~all~lp~~~fklvidsi~Wa~kHt~r~I~e~GL~il~~ll~n~~~~~~~~~~~Fy~~yy~ 89 (223)
|+.+...+.+++++...+=..+ .+.+..+++.++|+++.+ + + ...|.++..++..++..+ .....+..++.
T Consensus 699 ~~v~e~~~~~l~~~~~~~~~~~----~~~l~~~~~~l~~~~~~~-~-~-~~~l~l~~~li~~f~~~~--~~~~~~~~~l~ 769 (963)
T 2x19_B 699 AQVVEAVCAIFEKSVKTLLDDF----APMVPQLCEMLGRMYSTI-P-Q-ASALDLTRQLVHIFAHEP--AHFPPIEALFL 769 (963)
T ss_dssp HHHHHHHHHHHHHHHHHSSSTT----GGGHHHHHHHHHHHHHHS-C-C-HHHHHHHHHHHHHHTTCT--TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhcccc----cccHHHHHHHHHHHHHcC-C-c-cHHHHHHHHHHHHhCCCc--chHHHHHHHHH
Confidence 4444455555555443221111 233667888999999863 2 2 246667777777554321 12234556777
Q ss_pred HHHHHHhHHhc-C----CCc-hhhhHHHHHHHHHHHHH
Q psy4089 90 EILTHVFSVVT-D----TSH-SASLAHHAQILSYMFKL 121 (223)
Q Consensus 90 ~il~~vf~VlT-D----t~H-ksgF~~q~~iL~~Lf~l 121 (223)
.+++.++.++. | +++ +++|.+-..++.+....
T Consensus 770 ~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~ 807 (963)
T 2x19_B 770 LVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDL 807 (963)
T ss_dssp HHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHH
Confidence 77888888876 2 222 56677777766654433
No 15
>1b0b_A Hemoglobin; hemoprotein, sulfide carrier, globins, oxygen transport, oxygen storage/transport complex; HET: HEM; 1.43A {Lucina pectinata} SCOP: a.1.1.2 PDB: 1ebt_A* 1flp_A* 1moh_A*
Probab=31.09 E-value=59 Score=24.29 Aligned_cols=38 Identities=11% Similarity=0.030 Sum_probs=29.7
Q ss_pred hcCCchhHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHH
Q psy4089 32 LLIPQPQFKLVLDSIIWAFKHTMRNVADTGLMILHQLLVN 71 (223)
Q Consensus 32 l~lp~~~fklvidsi~Wa~kHt~r~I~e~GL~il~~ll~n 71 (223)
+.++|++|+.+-++++++++....+ ..++.-++..+.+
T Consensus 99 ~~V~p~~f~~~~~~Ll~~l~~~lg~--~~AW~~~~~~v~~ 136 (142)
T 1b0b_A 99 RGISAGQLEAAFKVLAGFMKSYGGD--EGAWTAVAGALMG 136 (142)
T ss_dssp TTCCHHHHHHHHHHHHHHGGGGTCC--HHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcCc--HHHHHHHHHHHHH
Confidence 4789999999999999999987776 5666655555544
No 16
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=30.43 E-value=1.3e+02 Score=25.93 Aligned_cols=35 Identities=14% Similarity=0.031 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHhcc
Q psy4089 40 KLVLDSIIWAFKHTMRNVADTGLMILHQLLVNVCH 74 (223)
Q Consensus 40 klvidsi~Wa~kHt~r~I~e~GL~il~~ll~n~~~ 74 (223)
-+++.++.|.+..++.+|.-.||+++..++..+..
T Consensus 86 Dll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~ 120 (266)
T 2of3_A 86 DLLLKWCTLRFFETNPAALIKVLELCKVIVELIRD 120 (266)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHh
Confidence 34566667778899999999999999999998864
No 17
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=29.88 E-value=1.7e+02 Score=21.65 Aligned_cols=38 Identities=29% Similarity=0.482 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhHHhcCCCchhhhHHHHHHHHHHHHHHHhCcc
Q psy4089 83 FYVTYFTEILTHVFSVVTDTSHSASLAHHAQILSYMFKLVETREV 127 (223)
Q Consensus 83 Fy~~yy~~il~~vf~VlTDt~HksgF~~q~~iL~~Lf~lve~~~i 127 (223)
.|...+...|-++|..+.|..++. =+.+++.+=++..|
T Consensus 78 ~f~~~f~~~l~~~~~~~~~~~~~~-------kl~~ll~iW~~r~v 115 (132)
T 4flb_A 78 IFRESFADVLPEAAALVKDPSVSK-------SVERIFKIWEDRNV 115 (132)
T ss_dssp HHHHHHHTTHHHHHHTTCSTTTHH-------HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHH-------HHHHHHHHhccCCC
Confidence 355556666667776666655442 24556666665444
No 18
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=28.65 E-value=94 Score=20.76 Aligned_cols=27 Identities=11% Similarity=0.415 Sum_probs=18.8
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHhhcCCChh
Q psy4089 148 RTLKSAFPHLTENQIKVTVQGMFDFNNDLP 177 (223)
Q Consensus 148 ~lL~~~Fp~l~~~qi~~FV~~lf~~~~d~~ 177 (223)
..|+..||++++..|+.-+. +..+|..
T Consensus 14 ~~L~emFP~ld~~~I~~vL~---a~~gdvd 40 (59)
T 1wgl_A 14 KAIQDMFPNMDQEVIRSVLE---AQRGNKD 40 (59)
T ss_dssp HHHHHHCSSSCHHHHHHHHT---TTTTCHH
T ss_pred HHHHHHCCCCCHHHHHHHHH---HcCCCHH
Confidence 34578999999999987443 4444543
No 19
>2d5u_A N-glycanase 1; pngase, hydrolase; NMR {Mus musculus} SCOP: d.314.1.1
Probab=28.53 E-value=47 Score=25.59 Aligned_cols=31 Identities=6% Similarity=-0.008 Sum_probs=25.9
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHHHHHhccc
Q psy4089 45 SIIWAFKHTMRNVADTGLMILHQLLVNVCHD 75 (223)
Q Consensus 45 si~Wa~kHt~r~I~e~GL~il~~ll~n~~~~ 75 (223)
.++++++...++...+++++|..++.|+-..
T Consensus 20 ~~l~~L~~n~~~~~~~a~~tL~kil~NIl~~ 50 (124)
T 2d5u_A 20 PAVAELCQNTPETFLEASKLLLTYADNILRN 50 (124)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHHcC
Confidence 4566667788999999999999999999743
No 20
>2r80_A Hemoglobin subunit alpha-A; oxygen tranport/storage, heme, iron, metal-binding, oxygen transport, transport, oxygen binding; HET: HEM; 1.44A {Columba livia} PDB: 3mju_A* 3dhr_A* 3mjp_A* 1faw_A* 3eok_A* 3k8b_A* 2qmb_A* 3fs4_A* 3a59_A* 1a4f_A* 1hv4_A* 2zfb_A* 1c40_A* 3at5_A* 3at6_A*
Probab=28.36 E-value=60 Score=24.49 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=14.7
Q ss_pred hcCCchhHHHHHHHHHHHhCC
Q psy4089 32 LLIPQPQFKLVLDSIIWAFKH 52 (223)
Q Consensus 32 l~lp~~~fklvidsi~Wa~kH 52 (223)
+.++|++|+.+-++++++++.
T Consensus 91 ~~V~p~~f~~~~~~Ll~~l~~ 111 (141)
T 2r80_A 91 LRVDPVNFKLLGHCFLVVVAV 111 (141)
T ss_dssp SCCCTHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHH
Confidence 456777777777777777764
No 21
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=28.21 E-value=37 Score=26.48 Aligned_cols=57 Identities=14% Similarity=0.125 Sum_probs=33.4
Q ss_pred cChhhhHHHHHHHHHHHhcchhhhhcCCchhHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHH
Q psy4089 8 EYPEHRTNFFLLLQAVNLHCFPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADTGLMILHQLLVN 71 (223)
Q Consensus 8 ~yPEhR~~Ff~LL~ai~~~cF~all~lp~~~fklvidsi~Wa~kHt~r~I~e~GL~il~~ll~n 71 (223)
.-|+|++.+.-|+.+|+++|=+.+ -+.+-..+.=+|.|+-+.+-+.+-.-+..+++-
T Consensus 55 ~~p~~KL~~LYL~DsIvkN~g~~y-------~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~ 111 (144)
T 1sz9_A 55 CMPKQKLYAFYALDSICKNVGSPY-------TIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKL 111 (144)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCTTH-------HHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCHhhHHHHHHHHHHHHHhccchH-------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 358999999999999999874322 233333344445554444445555555555543
No 22
>1x4q_A U4/U6 small nuclear ribonucleoprotein PRP3; PWI domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.11 E-value=86 Score=22.79 Aligned_cols=65 Identities=15% Similarity=0.285 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCChhHHHHHHHHHhHhhhhccCCCCchhcHHHHHHHHHHH
Q psy4089 140 VYVQEFVARTLKSAFPHLTENQIKVTVQGMFDFNNDLPAFKEHLRDFLVQIREFTGEDDSDLFLDEIEQTLKQA 213 (223)
Q Consensus 140 ~~v~~~l~~lL~~~Fp~l~~~qi~~FV~~lf~~~~d~~~Fk~~lrDFLIqiKEf~g~d~~dL~~eEre~~~~~~ 213 (223)
.-++.||...+..-.. ..++-+..||..+.....|+.+....|..||.. + +.-|..|--.-+..|
T Consensus 16 ~~lkpWI~kkv~e~LG-~eD~~lVd~i~~~l~~~~dpk~l~~~L~~fLd~-------~-a~~Fv~eLW~lL~~a 80 (92)
T 1x4q_A 16 DELKPWIEKTVKRVLG-FSEPTVVTAALNCVGKGMDKKKAADHLKPFLDD-------S-TLRFVDKLFEAVEEG 80 (92)
T ss_dssp HHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHTTCCHHHHHHHHTTTTGG-------G-THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhh-------h-HHHHHHHHHHHHHHH
Confidence 3677788877765554 577888888988888888988888888877642 2 456666644443333
No 23
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=26.82 E-value=3.6e+02 Score=25.13 Aligned_cols=84 Identities=15% Similarity=0.184 Sum_probs=50.0
Q ss_pred cChhhhHHHHHHHHHHHhcch-hhhhcCCchhHHHHHHHHHHHhCCCC--chHHHHHHHHHHHHHHHhcccchHHHHHHH
Q psy4089 8 EYPEHRTNFFLLLQAVNLHCF-PAFLLIPQPQFKLVLDSIIWAFKHTM--RNVADTGLMILHQLLVNVCHDAQSAAQSFY 84 (223)
Q Consensus 8 ~yPEhR~~Ff~LL~ai~~~cF-~all~lp~~~fklvidsi~Wa~kHt~--r~I~e~GL~il~~ll~n~~~~~~~~~~~Fy 84 (223)
.+|+.|...+..+.++....= ..+. +....++..++..+++.. +.+-+.++..+..+...... .+
T Consensus 576 ~~~~~~~~~~~~l~~l~~~~~~~~~~----~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~---~~----- 643 (876)
T 1qgr_A 576 QFNDLQSLLCATLQNVLRKVQHQDAL----QISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGG---EF----- 643 (876)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCHHHHH----TTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGG---GG-----
T ss_pred HHHHHHHHHHHHHHHHHHHhChhhhh----HHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHh---hH-----
Confidence 357777777777777776433 2222 235678899999999875 47888888888877776542 11
Q ss_pred HHHHHHHHHHHhHHhcCCC
Q psy4089 85 VTYFTEILTHVFSVVTDTS 103 (223)
Q Consensus 85 ~~yy~~il~~vf~VlTDt~ 103 (223)
..|+-.++.-+..++.|..
T Consensus 644 ~~~~~~~~~~l~~~l~~~~ 662 (876)
T 1qgr_A 644 LKYMEAFKPFLGIGLKNYA 662 (876)
T ss_dssp GGGHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHcCcc
Confidence 1233445555555555553
No 24
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=26.53 E-value=3.7e+02 Score=27.44 Aligned_cols=116 Identities=11% Similarity=0.152 Sum_probs=51.9
Q ss_pred CCch-HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhHHhc-CCCchhhhHHHHHHHHHHHHHHHhCccccc
Q psy4089 53 TMRN-VADTGLMILHQLLVNVCHDAQSAAQSFYVTYFTEILTHVFSVVT-DTSHSASLAHHAQILSYMFKLVETREVAAP 130 (223)
Q Consensus 53 t~r~-I~e~GL~il~~ll~n~~~~~~~~~~~Fy~~yy~~il~~vf~VlT-Dt~HksgF~~q~~iL~~Lf~lve~~~i~~p 130 (223)
.+.. .+..+..++..+++.+.... .. ..+ ..+ +.+.|+.-++ -+.|.+-.+-=+.+++.++...- |
T Consensus 1039 ~D~~~~~~~~~~~~~~~v~~~~~~~-~~-~~~-~~~---l~~~vl~~l~~~~~~~~~~~~l~~l~~~i~~~~~------~ 1106 (1204)
T 3a6p_A 1039 KDTLSCQRTTSQLCWPLLKQVLSGT-LL-ADA-VTW---LFTSVLKGLQMHGQHDGCMASLVHLAFQIYEALR------P 1106 (1204)
T ss_dssp SCHHHHHHHHHHTHHHHHTTSCSSC-CC-HHH-HHH---HHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHST------T
T ss_pred cCcHHHHHHHHHHHHHHHHHHhccc-Cc-hHH-HHH---HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHhC------C
Confidence 3555 55666777777777764321 11 112 233 3334444444 77788844444444444443321 2
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcC---CChhHHHHHHHHHhHhhhh
Q psy4089 131 LAPGVTDNVVYVQEFVARTLKSAFPHLTENQIKVTVQGMFDFN---NDLPAFKEHLRDFLVQIRE 192 (223)
Q Consensus 131 l~~~~~~n~~~v~~~l~~lL~~~Fp~l~~~qi~~FV~~lf~~~---~d~~~Fk~~lrDFLIqiKE 192 (223)
-+ + .++ +.| .+-|+++++.++.|...+-+-. ++.-+=|..++|||-.++.
T Consensus 1107 ~~-----~--~~~----~vl-~~lP~i~~~~~~~f~~~l~~~~~~~~~~k~qr~~~~~ll~~~~g 1159 (1204)
T 3a6p_A 1107 RY-----L--EIR----AVM-EQIPEIQKDSLDQFDCKLLNPSLQKVADKRRKDQFKRLIAGCIG 1159 (1204)
T ss_dssp TC-----S--THH----HHH-TTSSSCCHHHHHHHHHHSSCC-----------------------
T ss_pred CC-----c--cHH----HHH-HhCCCCCHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHhcC
Confidence 11 1 223 333 3569999999999999874322 3466778899999766654
No 25
>2o3l_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.05A {Bacillus cereus} SCOP: a.69.4.1
Probab=23.09 E-value=2e+02 Score=20.67 Aligned_cols=42 Identities=10% Similarity=0.120 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhHHhcCCCchhhhHHHHHHHHHHHHHHHhCc
Q psy4089 84 YVTYFTEILTHVFSVVTDTSHSASLAHHAQILSYMFKLVETRE 126 (223)
Q Consensus 84 y~~yy~~il~~vf~VlTDt~HksgF~~q~~iL~~Lf~lve~~~ 126 (223)
|+..|-.|..-+... ++.+...+..+...||-.+-.-+.+|+
T Consensus 17 Y~~ay~~i~~Yl~~~-~~~~g~~~~~il~~lldlfEeaaa~G~ 58 (85)
T 2o3l_A 17 YQFVFKKIQNYMWNF-SAGNGMDMLHIQYELIDLFEAGAAEGR 58 (85)
T ss_dssp HHHHHHHHHHHHHHH-CCSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHHHHHHHcCC
Confidence 778999999999975 669999999999999988888888885
No 26
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.11 E-value=84 Score=21.66 Aligned_cols=20 Identities=20% Similarity=0.521 Sum_probs=15.9
Q ss_pred HHHhhCCCCCHHHHHHHHHH
Q psy4089 149 TLKSAFPHLTENQIKVTVQG 168 (223)
Q Consensus 149 lL~~~Fp~l~~~qi~~FV~~ 168 (223)
-|+..||++++.-|+.-+..
T Consensus 24 ~L~~MFP~lD~~vI~~vL~a 43 (67)
T 2dhy_A 24 DFKTMFPNMDYDIIECVLRA 43 (67)
T ss_dssp HHHHHCSSSCHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHH
Confidence 36789999999999885543
No 27
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=22.04 E-value=62 Score=21.97 Aligned_cols=19 Identities=16% Similarity=0.396 Sum_probs=15.3
Q ss_pred HHHHHHhhCCCCCHHHHHH
Q psy4089 146 VARTLKSAFPHLTENQIKV 164 (223)
Q Consensus 146 l~~lL~~~Fp~l~~~qi~~ 164 (223)
+++-+++.|||++..+|..
T Consensus 20 Mve~V~~mFPqv~~~~I~~ 38 (58)
T 4g3o_A 20 MAHQIQEMFPQVPYHLVLQ 38 (58)
T ss_dssp HHHHHHHHCTTSCHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHH
Confidence 4556688999999998865
No 28
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=21.96 E-value=6e+02 Score=25.28 Aligned_cols=103 Identities=11% Similarity=0.123 Sum_probs=66.3
Q ss_pred ChhhhHHHHHHHHHHHhcchhhhhcCCchhHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Q psy4089 9 YPEHRTNFFLLLQAVNLHCFPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADTGLMILHQLLVNVCHDAQSAAQSFYVTYF 88 (223)
Q Consensus 9 yPEhR~~Ff~LL~ai~~~cF~all~lp~~~fklvidsi~Wa~kHt~r~I~e~GL~il~~ll~n~~~~~~~~~~~Fy~~yy 88 (223)
-|+.|..=...|..+... +++++...+++.++=++.++...|-..+...+..+...+... .....+-..|.
T Consensus 61 ~~~vR~~A~~~L~~l~~~-------~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~--~~~~~~~~~~~ 131 (1230)
T 1u6g_C 61 NGEVQNLAVKCLGPLVSK-------VKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPA--SSGSALAANVC 131 (1230)
T ss_dssp SHHHHHHHHHHHHHHHTT-------SCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-------CCTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh-------CCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCc--ccccchHHHHH
Confidence 455565555555555543 355778889999999999999999888888888888776431 00112334566
Q ss_pred HHHHHHHhHHhcCCCchhhhHHHHHHHHHHHHHHH
Q psy4089 89 TEILTHVFSVVTDTSHSASLAHHAQILSYMFKLVE 123 (223)
Q Consensus 89 ~~il~~vf~VlTDt~HksgF~~q~~iL~~Lf~lve 123 (223)
-.++..++..+.|+. ....+...|.-+..+++
T Consensus 132 ~~llp~L~~~l~~~~---~~~~~~~al~~l~~~~~ 163 (1230)
T 1u6g_C 132 KKITGRLTSAIAKQE---DVSVQLEALDIMADMLS 163 (1230)
T ss_dssp HHHHHHHHHHHSCCS---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC---chHHHHHHHHHHHHHHH
Confidence 677777788887622 23555656666666654
No 29
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=21.86 E-value=87 Score=20.30 Aligned_cols=21 Identities=19% Similarity=0.479 Sum_probs=16.6
Q ss_pred HHHHhhCCCCCHHHHHHHHHH
Q psy4089 148 RTLKSAFPHLTENQIKVTVQG 168 (223)
Q Consensus 148 ~lL~~~Fp~l~~~qi~~FV~~ 168 (223)
..|...||+++..+|+.-+..
T Consensus 9 ~~L~EMFP~~~~~~ik~~L~~ 29 (49)
T 1otr_A 9 SILMDMFPAISKSKLQVHLLE 29 (49)
T ss_dssp HHHHHHCSSSCHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHH
Confidence 456789999999999886543
No 30
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=21.58 E-value=1.2e+02 Score=20.16 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=16.6
Q ss_pred HHHHHhhCCCCCHHHHHHHHH
Q psy4089 147 ARTLKSAFPHLTENQIKVTVQ 167 (223)
Q Consensus 147 ~~lL~~~Fp~l~~~qi~~FV~ 167 (223)
.+-|+..||+++++=|+.-+.
T Consensus 16 ~~~L~~MFP~lD~evI~~Vl~ 36 (54)
T 1p3q_Q 16 LNTLQNMFPDMDPSLIEDVCI 36 (54)
T ss_dssp HHHHHHHSTTSCHHHHHHHHH
T ss_pred HHHHHHHcccCCHHHHHHHHH
Confidence 345689999999998887554
No 31
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=21.43 E-value=6.2e+02 Score=25.28 Aligned_cols=90 Identities=12% Similarity=0.170 Sum_probs=57.0
Q ss_pred cChhhhHHHHHHHHHHHhcchhhhhcCCc-----------hhHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHhcccc
Q psy4089 8 EYPEHRTNFFLLLQAVNLHCFPAFLLIPQ-----------PQFKLVLDSIIWAFKHTMRNVADTGLMILHQLLVNVCHDA 76 (223)
Q Consensus 8 ~yPEhR~~Ff~LL~ai~~~cF~all~lp~-----------~~fklvidsi~Wa~kHt~r~I~e~GL~il~~ll~n~~~~~ 76 (223)
+=+|.+.++-+|+.++...--.. -..|+ +.+..+++.++-...|+.-+|+...+.-+..++......+
T Consensus 289 ~D~d~~~~la~L~~~~ge~l~~~-~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~ 367 (980)
T 3ibv_A 289 TDPNFDEHVAKLINAQGVELVAI-KSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKES 367 (980)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH-HTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH-ccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhcc
Confidence 33556666666766655421111 22331 6788899999999999999999999999888887664211
Q ss_pred h-HHHHHHHHHHHHHHHHHHhHH
Q psy4089 77 Q-SAAQSFYVTYFTEILTHVFSV 98 (223)
Q Consensus 77 ~-~~~~~Fy~~yy~~il~~vf~V 98 (223)
. ....+-|+.+|..++.-++.=
T Consensus 368 ~~~~~~~~~~~~l~~Ll~~li~k 390 (980)
T 3ibv_A 368 SSKELSASLKEFLKSLLEAIIKK 390 (980)
T ss_dssp TSCCCCHHHHHHHHHHHHHHHHT
T ss_pred ccccccHHHHHHHHHHHHHHHHH
Confidence 0 011233556666666555543
No 32
>2o4t_A BH3976 protein; LEFT-handed superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 1.95A {Bacillus halodurans} SCOP: a.69.4.1
Probab=21.06 E-value=2.2e+02 Score=21.12 Aligned_cols=42 Identities=17% Similarity=0.279 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhHHhcCCCchhhhHHHHHHHHHHHHHHHhCc
Q psy4089 84 YVTYFTEILTHVFSVVTDTSHSASLAHHAQILSYMFKLVETRE 126 (223)
Q Consensus 84 y~~yy~~il~~vf~VlTDt~HksgF~~q~~iL~~Lf~lve~~~ 126 (223)
|+.+|-.|..-++.. ++.+...+..+...||-.+-.-+.+|+
T Consensus 14 Y~~ay~~i~~Yl~~~-~~~~g~~~~~il~~lldlfEeaaa~Gk 55 (100)
T 2o4t_A 14 YQIVYKEIQKYLFKV-GPVELNEGIGLLSEILGFFEEGAAAGK 55 (100)
T ss_dssp HHHHHHHHHHHHHHH-SCCSHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHHHHHHHcCC
Confidence 778999999999975 668899999888888888888888775
No 33
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=20.69 E-value=3.1e+02 Score=21.50 Aligned_cols=83 Identities=8% Similarity=0.085 Sum_probs=61.3
Q ss_pred hhhhHHHHHHHHHHHhcchhhhhcCCchhHHHHHHHHHHHh-CCCCchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Q psy4089 10 PEHRTNFFLLLQAVNLHCFPAFLLIPQPQFKLVLDSIIWAF-KHTMRNVADTGLMILHQLLVNVCHDAQSAAQSFYVTYF 88 (223)
Q Consensus 10 PEhR~~Ff~LL~ai~~~cF~all~lp~~~fklvidsi~Wa~-kHt~r~I~e~GL~il~~ll~n~~~~~~~~~~~Fy~~yy 88 (223)
+..|..=..-|.++...|-. + .+..+..+++.+.=++ |..+.+|...|++++-.|.+.+.. . | ..|.
T Consensus 29 w~~R~~a~~~L~~l~~~~~~-~---~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~---~----~-~~~~ 96 (242)
T 2qk2_A 29 WTLRKESLEVLEKLLTDHPK-L---ENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAK---R----F-SNYA 96 (242)
T ss_dssp HHHHHHHHHHHHHHHHHCSS-B---CCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGG---G----G-HHHH
T ss_pred HHHHHHHHHHHHHHHccCCC-C---CCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhh---h----H-HHHH
Confidence 34555555666666665532 2 2344678899999999 699999999999999999977642 2 2 4688
Q ss_pred HHHHHHHhHHhcCCCc
Q psy4089 89 TEILTHVFSVVTDTSH 104 (223)
Q Consensus 89 ~~il~~vf~VlTDt~H 104 (223)
-.++..++..+.|+..
T Consensus 97 ~~ilp~ll~~l~d~~~ 112 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKP 112 (242)
T ss_dssp HHHHHHHHHGGGCCCH
T ss_pred HHHHHHHHHHHcCCCH
Confidence 8899999999999753
No 34
>1out_A Hemoglobin I; heme, oxygen transport, respiratory protein, erythrocyte; HET: HEM; 2.30A {Oncorhynchus mykiss} SCOP: a.1.1.2 PDB: 1ouu_A*
Probab=20.37 E-value=74 Score=24.07 Aligned_cols=30 Identities=10% Similarity=0.036 Sum_probs=21.6
Q ss_pred cchhhhhcCCc------hhHHHHHHHHHHHhCCCCc
Q psy4089 26 HCFPAFLLIPQ------PQFKLVLDSIIWAFKHTMR 55 (223)
Q Consensus 26 ~cF~all~lp~------~~fklvidsi~Wa~kHt~r 55 (223)
.-|+.+-++++ .|-+.|+.++..+++|-..
T Consensus 42 ~~F~~f~~~~~~~~~~~~h~~~v~~al~~~v~~ld~ 77 (143)
T 1out_A 42 TYFSHWADLSPGSGPVKKHGGIIMGAIGKAVGLMDD 77 (143)
T ss_dssp GGGTTSSCCSTTCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhHHh
Confidence 35666556654 5668899999999997654
No 35
>3bom_B Hemoglobin subunit beta-4; FISH hemoglobin, structural genomics community request, protein structure initiative, PSI-2; HET: HEM; 1.35A {Oncorhynchus mykiss} PDB: 2r1h_B* 3bcq_B* 1spg_B*
Probab=20.35 E-value=55 Score=24.96 Aligned_cols=29 Identities=17% Similarity=0.138 Sum_probs=22.5
Q ss_pred chhhhhcCCc-----------hhHHHHHHHHHHHhCCCCc
Q psy4089 27 CFPAFLLIPQ-----------PQFKLVLDSIIWAFKHTMR 55 (223)
Q Consensus 27 cF~all~lp~-----------~~fklvidsi~Wa~kHt~r 55 (223)
-|+.+-++++ .|=+.|+.++..+++|-..
T Consensus 41 ~F~~f~~~~~~~~l~~~~~~~~h~~~v~~al~~~v~~ldd 80 (147)
T 3bom_B 41 HFSTFGNLSTPAAIMGNPAVAKHGKTVMHGLDRAVQNLDD 80 (147)
T ss_dssp GCGGGSCCSSHHHHHTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HccccccCCcHHHHhcCHHHHHHHHHHHHHHHHHHHhHhh
Confidence 5777667764 6778899999999997654
Done!