RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4089
(223 letters)
>gnl|CDD|198170 smart01102, CRM1_C, CRM1 C terminal. CRM1 (also known as
Exportin1) mediates the nuclear export of proteins
bearing a leucine-rich nuclear export signal (NES). CRM1
forms a complex with the NES containing protein and the
small GTPase Ran. This region forms an alpha helical
structure formed by six helical hairpin motifs that are
structurally similar to the HEAT repeat, but share
little sequence similarity to the HEAT repeat.
Length = 321
Score = 253 bits (649), Expect = 1e-84
Identities = 110/197 (55%), Positives = 140/197 (71%), Gaps = 2/197 (1%)
Query: 1 MINKDFEEYPEHRTNFFLLLQAVNLHCFPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADT 60
MINKDFEEYPEHR NFF LL+A+N HCFPAFL +P QFKLV+DSI+WAFKHT R+VADT
Sbjct: 125 MINKDFEEYPEHRVNFFKLLRAINSHCFPAFLSLPPEQFKLVIDSIVWAFKHTDRDVADT 184
Query: 61 GLMILHQLLVNVCHDAQSAAQSFYVTYFTEILTHVFSVVTDTSHSASLAHHAQILSYMFK 120
GL IL +LL NV A FY Y+ IL +FSV+TD+ H + +L+ +F+
Sbjct: 185 GLNILLELLNNVSKKDSQIANEFYKQYYFSILQDIFSVLTDSDHKSGFKLQCLLLAKLFR 244
Query: 121 LVETREVAAPL--APGVTDNVVYVQEFVARTLKSAFPHLTENQIKVTVQGMFDFNNDLPA 178
LVE ++ PL AP T+N ++QE++A L +AFP+LT+ QIK V G+F+ N D A
Sbjct: 245 LVEENPISVPLYDAPPGTNNKNFLQEYLANLLSTAFPNLTQEQIKSFVVGLFELNGDDNA 304
Query: 179 FKEHLRDFLVQIREFTG 195
FKEHLRDFL+QI+EF G
Sbjct: 305 FKEHLRDFLIQIKEFGG 321
>gnl|CDD|204057 pfam08767, CRM1_C, CRM1 C terminal. CRM1 (also known as Exportin1)
mediates the nuclear export of proteins bearing a
leucine-rich nuclear export signal (NES). CRM1 forms a
complex with the NES containing protein and the small
GTPase Ran. This region forms an alpha helical structure
formed by six helical hairpin motifs that are
structurally similar to the HEAT repeat, but share
little sequence similarity to the HEAT repeat.
Length = 279
Score = 202 bits (517), Expect = 3e-65
Identities = 94/195 (48%), Positives = 117/195 (60%), Gaps = 40/195 (20%)
Query: 1 MINKDFEEYPEHRTNFFLLLQAVNLHCFPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADT 60
MINKDFEEYPEHR FF LL+A+NLHCF A L +P QFKLV+DSI+WAFKHT R+VADT
Sbjct: 125 MINKDFEEYPEHRVEFFKLLRAINLHCFDALLNLPPEQFKLVIDSIVWAFKHTNRDVADT 184
Query: 61 GLMILHQLLVNVCHDAQSAAQSFYVTYFTEILTHVFSVVTDTSHSASLAHHAQILSYMFK 120
GL IL +LL NV + + A FY Y+ IL +F V+TDT
Sbjct: 185 GLNILLELLKNV-ENKSNVANKFYFQYYLSILQEIFEVLTDTD----------------- 226
Query: 121 LVETREVAAPLAPGVTDNVVYVQEFVARTLKSAFPHLTENQIKVTVQGMFDFNNDLPAFK 180
E++A L +AFP+LT++QIK V G+F +NDL FK
Sbjct: 227 ----------------------SEYIANLLSNAFPNLTQDQIKNFVVGLFKLSNDLKKFK 264
Query: 181 EHLRDFLVQIREFTG 195
EHLRDFL+Q++EF G
Sbjct: 265 EHLRDFLIQLKEFGG 279
>gnl|CDD|227432 COG5101, CRM1, Importin beta-related nuclear transport receptor
[Nuclear structure / Intracellular trafficking and
secretion].
Length = 1053
Score = 191 bits (487), Expect = 4e-56
Identities = 79/217 (36%), Positives = 126/217 (58%), Gaps = 3/217 (1%)
Query: 1 MINKDFEEYPEHRTNFFLLLQAVNLHCFPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADT 60
MI KDF+EYPEHR NF LLL+ +NL F AFL PQP FKLV ++I+W+FKH R+V+D
Sbjct: 839 MIVKDFDEYPEHRKNFLLLLENINLFSFSAFLSFPQPSFKLVYNTILWSFKHINRDVSDL 898
Query: 61 GLMILHQLLVNVCHDAQSAAQSFYVTYFTEILTHVFSVVTDTSHSASLAHHAQILSYMFK 120
GL IL L N FY Y+ L ++ V+TD+ H + +L+++ +
Sbjct: 899 GLNILLILFKNCHEMGVPFINQFYAQYYMSTLENILGVLTDSDHKSGFDQQCLLLAFLIR 958
Query: 121 LVETREVAAPLAPGVTDNVVYVQEFVARTLKSAFPHLTENQIKVTVQGMFDFNNDLPAFK 180
LV+ +++ PL G+ N+ + E++ +FP++T+ +K+ G+F+ D FK
Sbjct: 959 LVKDNKISVPLYDGINPNITILSEYIVGLFVKSFPNITQESVKIFSVGLFELCGDDEIFK 1018
Query: 181 EHLRDFLVQIREFTGEDDSDLFLDEIEQTLKQAQEKK 217
EH+ DF V++ EF ++D +EI+ ++ + K
Sbjct: 1019 EHVEDFRVKVYEFGTDEDLQ---EEIDLKNERIRRCK 1052
>gnl|CDD|132518 TIGR03478, DMSO_red_II_bet, DMSO reductase family type II enzyme,
iron-sulfur subunit. This model represents the
iron-sulfur subunit, typically called the beta subunit,
of various proteins that also contain a molybdopterin
subunit and a heme b subunit. The group includes two
distinct but very closely related periplasmic proteins
of anaerobic respiration, selenate reductase and
chlorate reductase. Other members of this family include
dimethyl sulphide dehydrogenase and ethylbenzene
dehydrogenase [Energy metabolism, Anaerobic, Energy
metabolism, Electron transport].
Length = 321
Score = 30.1 bits (68), Expect = 0.76
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 116 SYMFKLVETREVAAPLAP--GVTDNVVYVQEFVAR 148
+ KLV+ +VA PL P G NV YV R
Sbjct: 225 GPVHKLVKRWKVALPLHPEYGTEPNVFYVPPMGPR 259
>gnl|CDD|117020 pfam08443, RimK, RimK-like ATP-grasp domain. This ATP-grasp domain
is found in the ribosomal S6 modification enzyme RimK.
Length = 190
Score = 29.7 bits (67), Expect = 0.83
Identities = 18/64 (28%), Positives = 29/64 (45%)
Query: 157 LTENQIKVTVQGMFDFNNDLPAFKEHLRDFLVQIREFTGEDDSDLFLDEIEQTLKQAQEK 216
L ++ I V G+ D F E ++ F V ++ G +FL E EQ+L+Q E
Sbjct: 11 LAKHGIPVPNTGLAWSPEDAEKFIEQIKGFPVVVKSVFGSQGIGVFLAEDEQSLEQLLEA 70
Query: 217 KRQT 220
+
Sbjct: 71 FKWL 74
>gnl|CDD|217584 pfam03476, MOSC_N, MOSC N-terminal beta barrel domain. This domain
is found to the N-terminus of pfam03473. The function of
this domain is unknown, however it is predicted to adopt
a beta barrel fold.
Length = 118
Score = 28.5 bits (64), Expect = 1.2
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 160 NQIKVTVQGMFDFNNDLPAFKEHLRDFLVQIREFTGEDDSD 200
+ +T GM + L A K L LV F+G D D
Sbjct: 65 GGLTLTAPGMPPLSVPLAANKFQLVGVLVWGLSFSGRDCGD 105
>gnl|CDD|148159 pfam06385, Baculo_LEF-11, Baculovirus LEF-11 protein. This family
consists of several Baculovirus LEF-11 proteins. The
exact function of this family is unknown although it has
been shown that LEF-11 is required for viral DNA
replication during the infection cycle.
Length = 95
Score = 28.3 bits (64), Expect = 1.2
Identities = 13/54 (24%), Positives = 18/54 (33%), Gaps = 7/54 (12%)
Query: 71 NVC---HDAQSAAQSFYVTYFTEILTHVFSVVTDTSHSASLAHHAQILSYMFKL 121
NVC D A S Y L ++ +A H + L +F L
Sbjct: 26 NVCAHVEDDGFATIS---DYIRANLDK-AFIIVGDCSKKRVAPHRKRLERIFNL 75
>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only].
Length = 454
Score = 28.3 bits (64), Expect = 3.1
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 6/57 (10%)
Query: 150 LKSAFPHLTENQIKVTVQGMFDFNNDLPAFKEHLRDFLVQIREFTGEDDSDLFLDEI 206
L+ A HL + + L E LR + E TGE S+ LDEI
Sbjct: 396 LEQAAEHLED------ALQQLELGQPLDLLAEDLRLAQEALGEITGEFVSEDLLDEI 446
>gnl|CDD|218209 pfam04678, DUF607, Protein of unknown function, DUF607. This
family represents a conserved region found in several
uncharacterized eukaryotic proteins.
Length = 180
Score = 26.9 bits (60), Expect = 5.9
Identities = 8/46 (17%), Positives = 19/46 (41%)
Query: 82 SFYVTYFTEILTHVFSVVTDTSHSASLAHHAQILSYMFKLVETREV 127
+++VT T + + + + T+ S A + KL + +
Sbjct: 126 TYFVTLSTAMGGYAYFLYTNREPSYEAADDRLFSARQKKLYKRKGF 171
>gnl|CDD|188159 TIGR01633, phi3626_gp14_N, putative phage tail component,
N-terminal domain. This model represents the
best-conserved region of about 125 amino acids, toward
the N-terminus, of a family of proteins from temperate
phage of a number of Gram-positive bacteria. These phage
proteins range in length from 230 to 525 amino acids
[Mobile and extrachromosomal element functions, Prophage
functions].
Length = 124
Score = 26.5 bits (59), Expect = 6.3
Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 12/96 (12%)
Query: 115 LSYMFKL-VETREVAAPLAPGVTDNVVYVQEFVARTLKSAFPHLTENQIKVTVQGMFDFN 173
LS +F + V R + +P T V + L ++ V V+
Sbjct: 8 LSELFLVTVIKRPMYSPSERNTTSEVPGDGGVLVNV------KLGARELTVPVKINDIDP 61
Query: 174 NDLPAFKEHLRDFLVQIREFTGEDDSDLFLDEIEQT 209
DL L +L E +F DE ++T
Sbjct: 62 RDLRERFRELAGWL-----NRQEPVPLIFSDEPDKT 92
>gnl|CDD|221834 pfam12891, Glyco_hydro_44, Glycoside hydrolase family 44. This is
a family of bacterial glycoside hydrolases formerly
known as cellulase family J, and now known as Cel44A. It
is one of the major enzymatic components of the
cellulosome of Clostridium thermocellum strain F1 and of
many other Firmicutes.
Length = 236
Score = 26.9 bits (60), Expect = 8.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 130 PLAPGVTDNVVYVQEFVA 147
L P +TD VY+ E+V
Sbjct: 92 SLNPDLTDGSVYMDEWVN 109
>gnl|CDD|224130 COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cell envelope
biogenesis, outer membrane].
Length = 286
Score = 26.8 bits (60), Expect = 8.6
Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 27/70 (38%)
Query: 174 NDLPAFKEHLRD---FLVQI------------------REFTGEDDS------DLFLDEI 206
D P FKE L D F V I +F G+DD ++F D +
Sbjct: 56 EDKPTFKELLGDGSDFGVDITYAVQPEPDGLAHAVLIAEDFVGDDDFVLYLGDNIFQDGL 115
Query: 207 EQTLKQAQEK 216
+ L+ E+
Sbjct: 116 SELLEHFAEE 125
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.136 0.399
Gapped
Lambda K H
0.267 0.0699 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,172,991
Number of extensions: 1037613
Number of successful extensions: 1576
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1572
Number of HSP's successfully gapped: 32
Length of query: 223
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 130
Effective length of database: 6,812,680
Effective search space: 885648400
Effective search space used: 885648400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (25.8 bits)