RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4089
         (223 letters)



>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 321

 Score =  230 bits (589), Expect = 2e-76
 Identities = 137/196 (69%), Positives = 157/196 (80%), Gaps = 2/196 (1%)

Query: 1   MINKDFEEYPEHRTNFFLLLQAVNLHCFPAFLLIPQPQFKLVLDSIIWAFKHTMRNVADT 60
           MINKDFEEYPEHRTNFFLLLQAVN HCFPAFL IP  QFKLVLDSIIWAFKHTMRNVADT
Sbjct: 127 MINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADT 186

Query: 61  GLMILHQLLVNVCHDAQSAAQSFYVTYFTEILTHVFSVVTDTSHSASLAHHAQILSYMFK 120
           GL IL  LL NV    ++AAQSFY TYF +IL H+FSVVTDTSH+A L  HA IL+YMF 
Sbjct: 187 GLQILFTLLQNV-AQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFN 245

Query: 121 LVETREVAAPLAPGV-TDNVVYVQEFVARTLKSAFPHLTENQIKVTVQGMFDFNNDLPAF 179
           LVE  +++  L PG   +N +++QE+VA  LKSAFPHL + Q+K+ V G+F  N D+PAF
Sbjct: 246 LVEEGKISTSLNPGNPVNNQIFLQEYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPAF 305

Query: 180 KEHLRDFLVQIREFTG 195
           KEHLRDFLVQI+EF G
Sbjct: 306 KEHLRDFLVQIKEFAG 321


>d1f32a_ d.62.1.1 (A:) Pepsin inhibitor-3 {Pig roundworm (Ascaris
           suum) [TaxId: 6253]}
          Length = 147

 Score = 27.6 bits (61), Expect = 0.70
 Identities = 14/75 (18%), Positives = 21/75 (28%), Gaps = 8/75 (10%)

Query: 128 AAPLAPGVTDNVVYVQEFVARTLKSAFPHLTENQIKVTVQGMFDFNNDLPAFKEHLRDFL 187
             P    V DN V+V       L+       + Q+            D    K  +    
Sbjct: 7   TGPFICTVKDNQVFVANLPWTMLEG-----DDIQVGKEFAA---RVEDCTNVKHDMAPTC 58

Query: 188 VQIREFTGEDDSDLF 202
            +   F G  D  +F
Sbjct: 59  TKPPPFCGPQDMKMF 73


>d1xzpa1 a.24.25.1 (A:118-211,A:372-450) TrmE connector domain
           {Thermotoga maritima [TaxId: 2336]}
          Length = 173

 Score = 26.7 bits (58), Expect = 1.6
 Identities = 8/42 (19%), Positives = 11/42 (26%)

Query: 165 TVQGMFDFNNDLPAFKEHLRDFLVQIREFTGEDDSDLFLDEI 206
                      +      L   L  + E TG    +  LD I
Sbjct: 124 DAIKSLKEGMPVDMASIDLERALNLLDEVTGRSFREDLLDTI 165


>d1u7la_ e.57.1.1 (A:) Vacuolar ATP synthase subunit C {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 388

 Score = 27.1 bits (60), Expect = 2.0
 Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 1/52 (1%)

Query: 172 FNNDLPAFKEHLRDFLVQIREFTGEDDSDLFLDEIEQTLKQAQEKKRQTQLY 223
           F  ++  F    R+     REF    +  +   + E     + E+  + QL 
Sbjct: 235 FKKNVQEFTTAAREKKFIPREFNY-SEELIDQLKKEHDSAASLEQSLRVQLV 285


>d2d6fc2 d.74.4.1 (C:271-395) Glutamyl-tRNA(gln) amidotransferase
           subunit E, GatE, insert domain {Methanobacterium
           thermoautotrophicum [TaxId: 145262]}
          Length = 125

 Score = 25.3 bits (55), Expect = 3.6
 Identities = 10/63 (15%), Positives = 19/63 (30%), Gaps = 5/63 (7%)

Query: 156 HLTENQIKVTVQGMFDFNNDLPAFKEHLRDFLVQIREFTGEDDSDLFL---DEIEQTLKQ 212
            + +   K  V G+F    D         + +  +R+  G    D  +    E       
Sbjct: 53  EMADYAKKRGVSGIFHT--DELPAYGITEEEVRGLRDAVGASQGDAVVMVAHERVTAENA 110

Query: 213 AQE 215
            +E
Sbjct: 111 LRE 113


>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS)
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 445

 Score = 25.7 bits (55), Expect = 4.9
 Identities = 5/28 (17%), Positives = 14/28 (50%)

Query: 192 EFTGEDDSDLFLDEIEQTLKQAQEKKRQ 219
                 D DLF+  +++ L   ++++ +
Sbjct: 418 IGMKMQDVDLFIKRLDKCLNIVRKEQTR 445


>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
           (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
           63363]}
          Length = 247

 Score = 25.2 bits (55), Expect = 7.3
 Identities = 19/77 (24%), Positives = 27/77 (35%), Gaps = 4/77 (5%)

Query: 144 EFVARTLKSAFPHLTENQIKVTVQGMFDFNNDLPAFKEHLRDFLVQIREFTG----EDDS 199
           E VAR +        E  + + V  +     +   F      F   +    G     D  
Sbjct: 37  EVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGG 96

Query: 200 DLFLDEIEQTLKQAQEK 216
            LFLDEI +   +AQ K
Sbjct: 97  TLFLDEIGELSLEAQAK 113


>d1t3ya1 d.109.1.2 (A:2-131) Coactosin-like protein Cotl1 (Clp)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 130

 Score = 24.4 bits (53), Expect = 8.1
 Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 7/63 (11%)

Query: 151 KSAFPHLTENQIKVTVQGMFDFNNDLPAFKEHLRDFLVQI-REFTGEDDSDLFLDEIEQT 209
           K A        +    +            K  +++ +    +EF   D  +L  D I+  
Sbjct: 74  KFALITWIGENVSGLQRAKT------GTDKTLVKEVVQNFAKEFVISDRKELEEDFIKSE 127

Query: 210 LKQ 212
           LK+
Sbjct: 128 LKK 130


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0556    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 773,470
Number of extensions: 33604
Number of successful extensions: 174
Number of sequences better than 10.0: 1
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 17
Length of query: 223
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 141
Effective length of database: 1,281,736
Effective search space: 180724776
Effective search space used: 180724776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.8 bits)